HHsearch alignment for GI: 254780787 and conserved domain: cd04135

>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.18  E-value=2e-10  Score=89.23  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=95.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             898623685044677788642221-0012310001214999517843888851661578999866642068059999836
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD  464 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~  464 (884)
T Consensus         3 iv~vGd~~VGKTsli~rf~~~~f~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~~~~~~a~~~ilvydi~   82 (174)
T cd04135           3 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV   82 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECC
T ss_conf             99999899859999999962989988688575202279999999999999979764031556599855787678984379


Q ss_pred             CCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHH------H-HH-CCCCCCCCCCCCCEEEEEEECC
Q ss_conf             674023577789-----899--7099415612331244332000221------0-00-0132000123474036311002
Q gi|254780787|r  465 EEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRM------S-LL-KHDVFVESMGGDILDVEISAKN  529 (884)
Q Consensus       465 ~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~------~-~~-~~~~~~~~~~~~~~~~~~~~~~  529 (884)
T Consensus        83 ~---~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~-g~~~f~E~SAkt  158 (174)
T cd04135          83 N---PASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI-GAHCYVECSALT  158 (174)
T ss_pred             C---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             7---788999999999999986849988999685230044345545300457663999999999977-998999905487


Q ss_pred             CCCCCCCCCCHH
Q ss_conf             477411221000
Q gi|254780787|r  530 NLNLDKLLDAIL  541 (884)
Q Consensus       530 ~~~~~~~~~~~~  541 (884)
T Consensus       159 ~~nV~e~F~~~i  170 (174)
T cd04135         159 QKGLKTVFDEAI  170 (174)
T ss_pred             CCCHHHHHHHHH
T ss_conf             949899999999