HHsearch alignment for GI: 254780787 and conserved domain: cd04135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.18 E-value=2e-10 Score=89.23 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=95.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898623685044677788642221-0012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
T Consensus 3 iv~vGd~~VGKTsli~rf~~~~f~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~~~~~~a~~~ilvydi~ 82 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV 82 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECC
T ss_conf 99999899859999999962989988688575202279999999999999979764031556599855787678984379
Q ss_pred CCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHH------H-HH-CCCCCCCCCCCCCEEEEEEECC
Q ss_conf 674023577789-----899--7099415612331244332000221------0-00-0132000123474036311002
Q gi|254780787|r 465 EEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRM------S-LL-KHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 465 ~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~------~-~~-~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
T Consensus 83 ~---~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~-g~~~f~E~SAkt 158 (174)
T cd04135 83 N---PASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI-GAHCYVECSALT 158 (174)
T ss_pred C---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 7---788999999999999986849988999685230044345545300457663999999999977-998999905487
Q ss_pred CCCCCCCCCCHH
Q ss_conf 477411221000
Q gi|254780787|r 530 NLNLDKLLDAIL 541 (884)
Q Consensus 530 ~~~~~~~~~~~~ 541 (884)
T Consensus 159 ~~nV~e~F~~~i 170 (174)
T cd04135 159 QKGLKTVFDEAI 170 (174)
T ss_pred CCCHHHHHHHHH
T ss_conf 949899999999