HHsearch alignment for GI: 254780787 and conserved domain: cd04139

>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.18  E-value=1.2e-10  Score=90.91  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=96.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89862368504467778864222100123100012149-----9951784388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         3 vvlvGd~~VGKTsli~r~~~~~F~~~y----~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilv   78 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             999999998899999999719898774----8854416899999999999999998988662488999988637688999


Q ss_pred             EECCCCCCHHHHHHHH-----HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             9836674023577789-----899---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r  461 LAADEEIMPQAIESIN-----HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN  532 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~-----~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (884)
T Consensus        79 ydvt~---~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r--~v~~~e~~--~~a~~~--~~~~~E~SAk~g~n  149 (164)
T cd04139          79 FSITD---MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR--QVSSEEAA--NLARQW--GVPYVETSAKTRQN  149 (164)
T ss_pred             EECCC---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf             97797---78899999999999986087886369873303233417--78999999--999983--99899982687908


Q ss_pred             CCCCCCCHH
Q ss_conf             411221000
Q gi|254780787|r  533 LDKLLDAIL  541 (884)
Q Consensus       533 ~~~~~~~~~  541 (884)
T Consensus       150 V~~~F~~l~  158 (164)
T cd04139         150 VEKAFYDLV  158 (164)
T ss_pred             HHHHHHHHH
T ss_conf             899999999