HHsearch alignment for GI: 254780787 and conserved domain: cd04139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.18 E-value=1.2e-10 Score=90.91 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149-----9951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~~y----~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilv 78 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 999999998899999999719898774----8854416899999999999999998988662488999988637688999
Q ss_pred EECCCCCCHHHHHHHH-----HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9836674023577789-----899---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
T Consensus 79 ydvt~---~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r--~v~~~e~~--~~a~~~--~~~~~E~SAk~g~n 149 (164)
T cd04139 79 FSITD---MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR--QVSSEEAA--NLARQW--GVPYVETSAKTRQN 149 (164)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 97797---78899999999999986087886369873303233417--78999999--999983--99899982687908
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
T Consensus 150 V~~~F~~l~ 158 (164)
T cd04139 150 VEKAFYDLV 158 (164)
T ss_pred HHHHHHHHH
T ss_conf 899999999