HHsearch alignment for GI: 254780787 and conserved domain: cd04141

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.08  E-value=3.8e-10  Score=87.39  Aligned_cols=145  Identities=17%  Similarity=0.222  Sum_probs=96.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCEE---E--EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             89862368504467778864222-100123100012149---9--95178438888516615789998666420680599
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGAY---Q--VAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL  459 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga~---~--~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il  459 (884)
T Consensus         5 iv~lGd~~VGKTsli~r~~~~~f~~~~~p---T--i~~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l~~~~~r~a~~~il   79 (172)
T cd04141           5 IVMLGAGGVGKSAVTMQFISHSFPDYHDP---T--IEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII   79 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCC---C--CCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEE
T ss_conf             99999999779999999970989987588---4--222036999999999999999788851357451556427865688


Q ss_pred             EEECCCCCCHHHHHHH----HHHH-HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             9983667402357778----9899-7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r  460 VLAADEEIMPQAIESI----NHAK-AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD  534 (884)
Q Consensus       460 vv~~~~g~~~qt~e~~----~~~~-~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (884)
T Consensus        80 vydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~--r~Vs~~e~--~~~a~~~--~~~f~EtSAk~~~nV~  153 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ--RQVTTEEG--RNLAREF--NCPFFETSAALRHYID  153 (172)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHH--CCCCHHHH--HHHHHHC--CCEEEEECCCCCCCHH
T ss_conf             7316888899999999999999728899868998504566761--88899999--9999985--9979997478882889


Q ss_pred             CCCCCHH
Q ss_conf             1221000
Q gi|254780787|r  535 KLLDAIL  541 (884)
Q Consensus       535 ~~~~~~~  541 (884)
T Consensus       154 e~F~~l~  160 (172)
T cd04141         154 DAFHGLV  160 (172)
T ss_pred             HHHHHHH
T ss_conf             9999999