HHsearch alignment for GI: 254780787 and conserved domain: cd04141
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.08 E-value=3.8e-10 Score=87.39 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=96.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCEE---E--EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222-100123100012149---9--95178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGAY---Q--VAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga~---~--~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f~~~~~p---T--i~~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l~~~~~r~a~~~il 79 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSFPDYHDP---T--IEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC---C--CCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 99999999779999999970989987588---4--222036999999999999999788851357451556427865688
Q ss_pred EEECCCCCCHHHHHHH----HHHH-HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 9983667402357778----9899-7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESI----NHAK-AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~----~~~~-~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
T Consensus 80 vydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~--r~Vs~~e~--~~~a~~~--~~~f~EtSAk~~~nV~ 153 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ--RQVTTEEG--RNLAREF--NCPFFETSAALRHYID 153 (172)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHH--CCCCHHHH--HHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 7316888899999999999999728899868998504566761--88899999--9999985--9979997478882889
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
T Consensus 154 e~F~~l~ 160 (172)
T cd04141 154 DAFHGLV 160 (172)
T ss_pred HHHHHHH
T ss_conf 9999999