HHsearch alignment for GI: 254780787 and conserved domain: cd04145
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.14 E-value=2.4e-10 Score=88.75 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=97.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149-----9951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f~~~y----~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilv 80 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 999999997889999999809898756----7841358999999999999999998988603125679873467874689
Q ss_pred EECCCCCCHHHHHHHH-HH-H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9836674023577789-89-9---70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 461 LAADEEIMPQAIESIN-HA-K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-~~-~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
T Consensus 81 ydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r--~Vs~~e~~--~~a~~~--~~~~~E~SAk~~~nV~e 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR--KVSREEGQ--ELARKL--KIPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 8567354399999999999986188777526530345735408--89999999--999981--99899985486827799
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
T Consensus 155 ~F~~l~ 160 (164)
T cd04145 155 AFHDLV 160 (164)
T ss_pred HHHHHH
T ss_conf 999999