HHsearch alignment for GI: 254780787 and conserved domain: cd04146

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.94  E-value=5.8e-09  Score=79.25  Aligned_cols=145  Identities=18%  Similarity=0.244  Sum_probs=92.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH-HHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHH-HHHHHHCCCCEE
Q ss_conf             8986236850446777886422-2100123100012149-----99517843888851661578999-866642068059
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKAD-VAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEM-RARGARVTDIAV  458 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~-~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~-r~rg~~~~d~~i  458 (884)
T Consensus         2 iv~vGd~~VGKTsli~rf~~~~f~~~y~-----~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~~~~~~a~~~i   76 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLTKRFIGEYD-----PNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV   76 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCC-----CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCCEEE
T ss_conf             9999989977899999997498998759-----95563057999999999999999289850122012554304587899


Q ss_pred             EEEECCCCCCHHHHHHH----HHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC-C
Q ss_conf             99983667402357778----9899--709941561233124433200022100001320001234740363110024-7
Q gi|254780787|r  459 LVLAADEEIMPQAIESI----NHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN-L  531 (884)
Q Consensus       459 lvv~~~~g~~~qt~e~~----~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  531 (884)
T Consensus        77 lvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r--~Vs~ee~~--~~a~~~--~~~f~E~SAk~~~~  150 (165)
T cd04146          77 LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR--QVSTEEGE--KLASEL--GCLFFEVSAAEDYD  150 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEEECCCCCC
T ss_conf             9986588899999999999999984669995399844554521036--77999999--999981--99899975208782


Q ss_pred             CCCCCCCCHH
Q ss_conf             7411221000
Q gi|254780787|r  532 NLDKLLDAIL  541 (884)
Q Consensus       532 ~~~~~~~~~~  541 (884)
T Consensus       151 ~V~~~F~~l~  160 (165)
T cd04146         151 GVHSVFHELC  160 (165)
T ss_pred             CHHHHHHHHH
T ss_conf             6999999999