HHsearch alignment for GI: 254780787 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.94 E-value=5.8e-09 Score=79.25 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=92.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-HHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHH-HHHHHHCCCCEE
Q ss_conf 8986236850446777886422-2100123100012149-----99517843888851661578999-866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKAD-VAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEM-RARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~-~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~-r~rg~~~~d~~i 458 (884)
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~f~~~y~-----~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~~~~~~a~~~i 76 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYD-----PNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC-----CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCCEEE
T ss_conf 9999989977899999997498998759-----95563057999999999999999289850122012554304587899
Q ss_pred EEEECCCCCCHHHHHHH----HHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC-C
Q ss_conf 99983667402357778----9899--709941561233124433200022100001320001234740363110024-7
Q gi|254780787|r 459 LVLAADEEIMPQAIESI----NHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN-L 531 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~----~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 531 (884)
T Consensus 77 lvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r--~Vs~ee~~--~~a~~~--~~~f~E~SAk~~~~ 150 (165)
T cd04146 77 LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR--QVSTEEGE--KLASEL--GCLFFEVSAAEDYD 150 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEEECCCCCC
T ss_conf 9986588899999999999999984669995399844554521036--77999999--999981--99899975208782
Q ss_pred CCCCCCCCHH
Q ss_conf 7411221000
Q gi|254780787|r 532 NLDKLLDAIL 541 (884)
Q Consensus 532 ~~~~~~~~~~ 541 (884)
T Consensus 151 ~V~~~F~~l~ 160 (165)
T cd04146 151 GVHSVFHELC 160 (165)
T ss_pred CHHHHHHHHH
T ss_conf 6999999999