HHsearch alignment for GI: 254780787 and conserved domain: cd04150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.47 E-value=4.3e-13 Score=107.50 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=105.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
T Consensus 3 ililG~~~sGKTsll~~l~~~~~~~~~---pT~g~~~~~~~~~~~~l~iwD~~G~~~~r~l~~~Y~~~a~~iI~VvD~sd 79 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 999999999989999999729967758---96870179999898999999789972146567864768738999997777
Q ss_pred C-CCHHHHHHHH----HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 7-4023577789----8997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 E-IMPQAIESIN----HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g-~~~qt~e~~~----~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
T Consensus 80 ~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~---l~~~~~~~~~i~~~SA~tG~Gv~e~f~WL 156 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG---LHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC---HHHHHCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 789999999999996235336982999997566778989999999968---66663798599982686793989999998
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
T Consensus 157 ~ 157 (159)
T cd04150 157 S 157 (159)
T ss_pred H
T ss_conf 5