HHsearch alignment for GI: 254780787 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.48 E-value=2.9e-13 Score=108.66 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=104.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~~~~~p---Tig~~~~~i~~~~~~~~iwD~~G~e~~r~~~~~y~~~~~~ii~VvD~sd 78 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTTIP---TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD 78 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCC---CCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 9999999998999999997099677578---4882469999898899999679862446278874667889999974578
Q ss_pred CCCH-----HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 7402-----35777898997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 EIMP-----QAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g~~~-----qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~---~~l~l~~~~~~~~~~~~tSA~tG~gV~e~f~wL 155 (158)
T cd04151 79 RDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEIS---EKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH---HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 78999999999999834653698199999766776577999999---998598741699689996787893999999998
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
T Consensus 156 ~ 156 (158)
T cd04151 156 V 156 (158)
T ss_pred H
T ss_conf 5