HHsearch alignment for GI: 254780787 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.32 E-value=2.7e-11 Score=95.20 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=107.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001214--99951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 2 ililGLd~aGKTTil~~l~~~~~-----~~~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDs 76 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP-----KKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCC-----CCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 89990089988999999828998-----7650877731799998999999998998778889999873477657999855
Q ss_pred CCC-CCHHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC------
Q ss_conf 667-4023577789899----70994156123312443320002210000132000123474036311002477------
Q gi|254780787|r 464 DEE-IMPQAIESINHAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN------ 532 (884)
Q Consensus 464 ~~g-~~~qt~e~~~~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 532 (884)
T Consensus 77 sD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~tG~G~~~~~~ 156 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEECCCCCCCCCC
T ss_conf 75889999999999996588778995999988657615899999998819742408998637999576444888787663
Q ss_pred CCCCCCCH
Q ss_conf 41122100
Q gi|254780787|r 533 LDKLLDAI 540 (884)
Q Consensus 533 ~~~~~~~~ 540 (884)
T Consensus 157 l~eGl~WL 164 (167)
T cd04161 157 IVEGLRWL 164 (167)
T ss_pred HHHHHHHH
T ss_conf 15499898