HHsearch alignment for GI: 254780787 and conserved domain: pfam00009
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=8.7e-33 Score=242.23 Aligned_cols=161 Identities=37% Similarity=0.467 Sum_probs=133.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-----------------HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHH
Q ss_conf 5303898623685044677788642221-----------------00123100012149995178438888516615789
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVA-----------------KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~-----------------~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
T Consensus 2 ~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 81 (185)
T pfam00009 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVDFT 81 (185)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCHH
T ss_conf 96789999389944999999997154876546431003333655888857826987699996089368999899871439
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHCCCCCCCCCC-CCCEE
Q ss_conf 9986664206805999983667402357778989970994156123312443-320002210000132000123-47403
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLG-ADPQKVRMSLLKHDVFVESMG-GDILD 522 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 522 (884)
T Consensus 82 ~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~~~~~~~pi 161 (185)
T pfam00009 82 KEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYGFGGETIPV 161 (185)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999986465642999867685323099999999828987999977327776769999999999988873248998869
Q ss_pred EEEEECCCCCCCCCCCCHHC
Q ss_conf 63110024774112210000
Q gi|254780787|r 523 VEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~ 542 (884)
T Consensus 162 vpiSA~~G~gv~~Ll~~i~~ 181 (185)
T pfam00009 162 IPGSALTGEGIDTLLEALDL 181 (185)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99678999798999999997