HHsearch alignment for GI: 254780787 and conserved domain: pfam00071
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.42 E-value=1.3e-12 Score=104.13 Aligned_cols=147 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100012149995178--4388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~~~~ad~~iivfd~ 81 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDI 81 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 89999799779999999961999987477413556789999999999999997898720467889986257655042348
Q ss_pred CCCCCHHHHHHHHHH----HH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 667402357778989----97---09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 464 DEEIMPQAIESINHA----KA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~~~qt~e~~~~~----~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
T Consensus 82 ~~---~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~--i~~~e~~--~~a~~~--~~~y~e~Sak~g~gI~~~ 152 (162)
T pfam00071 82 TS---RDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRV--VSTEEGE--ALAKEL--GLPFMETSAKTNENVEEA 152 (162)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC--CCHHHHH--HHHHHH--CCEEEEECCCCCCCHHHH
T ss_conf 98---89999999999999985798862889975247465188--9999999--999980--997999737888299999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
T Consensus 153 F~~i~ 157 (162)
T pfam00071 153 FEELA 157 (162)
T ss_pred HHHHH
T ss_conf 99999