HHsearch alignment for GI: 254780787 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=96.70 E-value=0.04 Score=32.51 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=75.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEEC-CCCEEEEEECCCHHHHHHH-----HHHHHHCCCCE
Q ss_conf 89862368504467778864222100123--1000121499951-7843888851661578999-----86664206805
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAY-QGKNITFLDTPGHAAFYEM-----RARGARVTDIA 457 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~-~~~~~~~iDtPGh~~f~~~-----r~rg~~~~d~~ 457 (884)
T Consensus 2 iLLMG~~~sGKTSi~~vI-F~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~~~~e~if~~v~~l 80 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSII-FSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVL 80 (230)
T ss_pred EEEECCCCCCHHHHHHHH-HCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHCCCEE
T ss_conf 787568999877769998-6799821412025777767787741687368999769835354412002235476447889
Q ss_pred EEEEECCCCCCH----HHHHHHHHHHHCCC--CEEEECCCCCCCCCC
Q ss_conf 999983667402----35777898997099--415612331244332
Q gi|254780787|r 458 VLVLAADEEIMP----QAIESINHAKAADV--SIIVAINKIDKLGAD 498 (884)
Q Consensus 458 ilvv~~~~g~~~----qt~e~~~~~~~~~~--p~iva~nk~d~~~~~ 498 (884)
T Consensus 81 IyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d 127 (230)
T pfam04670 81 IYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED 127 (230)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf 99996888609999999999999999839998899999603588866