HHsearch alignment for GI: 254780787 and conserved domain: pfam04670

>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=96.70  E-value=0.04  Score=32.51  Aligned_cols=112  Identities=21%  Similarity=0.308  Sum_probs=75.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEEC-CCCEEEEEECCCHHHHHHH-----HHHHHHCCCCE
Q ss_conf             89862368504467778864222100123--1000121499951-7843888851661578999-----86664206805
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAY-QGKNITFLDTPGHAAFYEM-----RARGARVTDIA  457 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~-~~~~~~~iDtPGh~~f~~~-----r~rg~~~~d~~  457 (884)
T Consensus         2 iLLMG~~~sGKTSi~~vI-F~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~~~~e~if~~v~~l   80 (230)
T pfam04670         2 VLLMGLRGSGKSSMRSII-FSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVL   80 (230)
T ss_pred             EEEECCCCCCHHHHHHHH-HCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHCCCEE
T ss_conf             787568999877769998-6799821412025777767787741687368999769835354412002235476447889


Q ss_pred             EEEEECCCCCCH----HHHHHHHHHHHCCC--CEEEECCCCCCCCCC
Q ss_conf             999983667402----35777898997099--415612331244332
Q gi|254780787|r  458 VLVLAADEEIMP----QAIESINHAKAADV--SIIVAINKIDKLGAD  498 (884)
Q Consensus       458 ilvv~~~~g~~~----qt~e~~~~~~~~~~--p~iva~nk~d~~~~~  498 (884)
T Consensus        81 IyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d  127 (230)
T pfam04670        81 IYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED  127 (230)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf             99996888609999999999999999839998899999603588866