HHsearch alignment for GI: 254780787 and conserved domain: pfam08477

>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.79  E-value=6.8e-08  Score=71.96  Aligned_cols=108  Identities=20%  Similarity=0.280  Sum_probs=76.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHC---CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             89862368504467778864222100---123100012149995178438888516615789998666420680599998
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKG---EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA  462 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~---e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~  462 (884)
T Consensus         2 ivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~~ilvyd   81 (118)
T pfam08477         2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHIIFMKTADAILLVYD   81 (118)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             99999899789999999983988876667877776888999999928999999899967776666542258746789997


Q ss_pred             CCCCCCHHHHHH----HHHHHH--CCCCEEEECCCCC
Q ss_conf             366740235777----898997--0994156123312
Q gi|254780787|r  463 ADEEIMPQAIES----INHAKA--ADVSIIVAINKID  493 (884)
Q Consensus       463 ~~~g~~~qt~e~----~~~~~~--~~~p~iva~nk~d  493 (884)
T Consensus        82 it~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D  118 (118)
T pfam08477        82 LTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD  118 (118)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             9987899999999999999982099998899996859