HHsearch alignment for GI: 254780787 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.79 E-value=6.8e-08 Score=71.96 Aligned_cols=108 Identities=20% Similarity=0.280 Sum_probs=76.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC---CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89862368504467778864222100---123100012149995178438888516615789998666420680599998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG---EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~---e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~~ilvyd 81 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHIIFMKTADAILLVYD 81 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999899789999999983988876667877776888999999928999999899967776666542258746789997
Q ss_pred CCCCCCHHHHHH----HHHHHH--CCCCEEEECCCCC
Q ss_conf 366740235777----898997--0994156123312
Q gi|254780787|r 463 ADEEIMPQAIES----INHAKA--ADVSIIVAINKID 493 (884)
Q Consensus 463 ~~~g~~~qt~e~----~~~~~~--~~~p~iva~nk~d 493 (884)
T Consensus 82 it~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 82 LTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 9987899999999999999982099998899996859