HHsearch alignment for GI: 254780787 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.24 E-value=1.4e-10 Score=90.35 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=112.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 553038986236850446777886422210012310001214--999517843888851661578999866642068059
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk~~~-----~~~~~PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~lW~~Yy~~~~~iI 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR-----LAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 661479999658898899999980699-----753057878864899999999999988987778899998821675899
Q ss_pred EEEECCCC-CCHHHHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCC----CCCCCEEEEEEECC
Q ss_conf 99983667-402357778989----9709941561233124433200022100001320001----23474036311002
Q gi|254780787|r 459 LVLAADEE-IMPQAIESINHA----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVES----MGGDILDVEISAKN 529 (884)
Q Consensus 459 lvv~~~~g-~~~qt~e~~~~~----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 529 (884)
T Consensus 90 fVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i~~~SA~t 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 99726868899999999999864676559709999975677789999999988195123265576677631999735607
Q ss_pred CCCCCCCCCCH
Q ss_conf 47741122100
Q gi|254780787|r 530 NLNLDKLLDAI 540 (884)
Q Consensus 530 ~~~~~~~~~~~ 540 (884)
T Consensus 170 G~Gl~egl~WL 180 (184)
T smart00178 170 RMGYGEGFKWL 180 (184)
T ss_pred CCCHHHHHHHH
T ss_conf 97869999999