BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] (884 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 1782 bits (4616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 884/884 (100%), Positives = 884/884 (100%) Query: 1 MTDNKDNKKSNVVEKKTLTLKTSSLGVGHSSFQNQGANQGRARSVVVETRKRRSYVQGEE 60 MTDNKDNKKSNVVEKKTLTLKTSSLGVGHSSFQNQGANQGRARSVVVETRKRRSYVQGEE Sbjct: 1 MTDNKDNKKSNVVEKKTLTLKTSSLGVGHSSFQNQGANQGRARSVVVETRKRRSYVQGEE 60 Query: 61 KVSVFRKSSRVIESSSDSSQDLSQAKAKGNFRRASRSDKVSSQKNDSSFAGLSQGEIESR 120 KVSVFRKSSRVIESSSDSSQDLSQAKAKGNFRRASRSDKVSSQKNDSSFAGLSQGEIESR Sbjct: 61 KVSVFRKSSRVIESSSDSSQDLSQAKAKGNFRRASRSDKVSSQKNDSSFAGLSQGEIESR 120 Query: 121 RRALHEAQVREEELRKRLEQQSLEQPSQESSIDLPEVCDSQQVPEQVLEDPCKEKDLEIK 180 RRALHEAQVREEELRKRLEQQSLEQPSQESSIDLPEVCDSQQVPEQVLEDPCKEKDLEIK Sbjct: 121 RRALHEAQVREEELRKRLEQQSLEQPSQESSIDLPEVCDSQQVPEQVLEDPCKEKDLEIK 180 Query: 181 DVDVGTEVESSVILSHDMGDSDSSSVVNNKFRESSSDASSNRGKSRGGAGKYASVNSSKP 240 DVDVGTEVESSVILSHDMGDSDSSSVVNNKFRESSSDASSNRGKSRGGAGKYASVNSSKP Sbjct: 181 DVDVGTEVESSVILSHDMGDSDSSSVVNNKFRESSSDASSNRGKSRGGAGKYASVNSSKP 240 Query: 241 VTRNKVGDDDKKYKKVRIAVAADVDEEGGASRGRSLSAMRRRQEKFRRNQQQEKREKISR 300 VTRNKVGDDDKKYKKVRIAVAADVDEEGGASRGRSLSAMRRRQEKFRRNQQQEKREKISR Sbjct: 241 VTRNKVGDDDKKYKKVRIAVAADVDEEGGASRGRSLSAMRRRQEKFRRNQQQEKREKISR 300 Query: 301 EIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRV 360 EIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRV Sbjct: 301 EIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRV 360 Query: 361 LESDIEVGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI 420 LESDIEVGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI Sbjct: 361 LESDIEVGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI 420 Query: 421 GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKA 480 GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKA Sbjct: 421 GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKA 480 Query: 481 ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI Sbjct: 481 ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 Query: 541 LLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRA 600 LLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRA Sbjct: 541 LLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRA 600 Query: 601 LFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMAR 660 LFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMAR Sbjct: 601 LFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMAR 660 Query: 661 RLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSV 720 RLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSV Sbjct: 661 RLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSV 720 Query: 721 GAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSEL 780 GAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSEL Sbjct: 721 GAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSEL 780 Query: 781 LSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTL 840 LSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTL Sbjct: 781 LSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTL 840 Query: 841 KRFKDEVSEVHAGQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL 884 KRFKDEVSEVHAGQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL Sbjct: 841 KRFKDEVSEVHAGQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL 884 >gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 386 VTIMGHVDHGKTSLLDAIRKA-----------DVAKGE-IGGITQHIGAYQVAYQG--KN 431 ++ +GHVDHGKT+L AI K D A E + GIT I V+Y+ + Sbjct: 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDKRF 72 Query: 432 ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV-SIIVAIN 490 + +D PGHA + + GA D A+LV AA++ PQ E I A+ + SI+V +N Sbjct: 73 YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMN 132 Query: 491 KIDKLGAD 498 K+D + D Sbjct: 133 KVDAVDDD 140 >gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 386 VTIMGHVDHGKTSLLDAIRKA-----------DVAKGE-IGGITQHIGAYQVAYQG--KN 431 ++ +GHVDHGKT+L AI K D A E + GIT I V+Y+ + Sbjct: 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDKRF 72 Query: 432 ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV-SIIVAIN 490 + +D PGHA + + GA D A+LV AA++ PQ E I A+ + SI+V +N Sbjct: 73 YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMN 132 Query: 491 KIDKLGAD 498 K+D + D Sbjct: 133 KVDAVDDD 140 >gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] Length = 701 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%) Query: 388 IMGHVDHGKTSLLDAIRKADVAKGEIG------------------GITQHIGAYQVAYQG 429 IM H+D GKT+ + I +IG GIT + V + G Sbjct: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG 74 Query: 430 -----KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484 K +T +DTPGH F R RVTD A+ +L ++ + PQ A V Sbjct: 75 RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP 134 Query: 485 IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILLQA 544 ++ NK+DK+GAD + ++ +G + L +++ + N ++D + ++A Sbjct: 135 RVIFCNKMDKMGADFYR------SVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKA 188 Query: 545 EML---DLKTSIN 554 + DL +S + Sbjct: 189 LLWKNEDLGSSWD 201 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 31/223 (13%) Query: 387 TIMGHVDHGKTSLLD-----------------AIRKADVAKGEIGGITQHIGAYQVAYQG 429 +I+ H+DHGK++L D + D+ + GIT ++ Y Sbjct: 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERER--GITIKAQTVRLNYTS 72 Query: 430 KN-----ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484 + + +DTPGH F +R + ++LV+ A + + Q + ++ A + Sbjct: 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE 132 Query: 485 IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILD-VEISAKNNLNLDKLLDAILLQ 543 II +NK D ADP +V+ + E++G D + +SAK + LL+ I+ Q Sbjct: 133 IITVLNKADLPSADPDRVKKQI------EETIGISTEDALLVSAKTGEGIPLLLERIVQQ 186 Query: 544 AEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586 N + ++++ + G +V V + G L+KG Sbjct: 187 LPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKG 229 >gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 624 Score = 49.3 bits (116), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 22/145 (15%) Query: 368 GIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKA------------------DVA 409 G+F + + IR + I+ HVDHGKT+L+D + K D+ Sbjct: 6 GLFFIYGRLGYMQIRN--IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLE 63 Query: 410 KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMP 469 K GIT + + I +DTPGHA F R + + V+++ A E MP Sbjct: 64 KER--GITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMP 121 Query: 470 QAIESINHAKAADVSIIVAINKIDK 494 Q + A + IV +NK+D+ Sbjct: 122 QTKFVVGKALKIGLRPIVVVNKVDR 146 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 33.9 bits (76), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG 439 + I+GH + GK+SL +A+ K DVA +I G T+ + + +G + DT G Sbjct: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 >gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 411 Score = 26.6 bits (57), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 22/32 (68%) Query: 1 MTDNKDNKKSNVVEKKTLTLKTSSLGVGHSSF 32 ++DNK+N +V++ + +K S++G+G S+ Sbjct: 327 LSDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 26.6 bits (57), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 25/129 (19%) Query: 382 RPPVVTIMGHVDHGKTSLLD---------AIRKADVAKGEIGGITQHIGAYQVAYQGKNI 432 R V ++G + GK++L++ K + + GI V+ + I Sbjct: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI--------VSEKESQI 72 Query: 433 TFLDTPG--------HAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484 FLDTPG H + + DI LV+ + E+ + + Sbjct: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 Query: 485 IIVAINKID 493 +I+ +NKID Sbjct: 133 LILILNKID 141 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 26.6 bits (57), Expect = 2.1, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 304 VPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVI 341 +P +T+ LS M+E ++ K+ EG ++K GD+I Sbjct: 1 MPILVTMPSLSPTMTE--GNIAKWKKNEGDLIKQGDII 36 >gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Length = 864 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 516 MGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVT 575 M +ILD+ SAK L+ + +Q ++ G+ L RG P + Sbjct: 675 MFLNILDLSNSAKMPKGASMALNHVWIQ-----YSATMALAGIGVASIKALLRGEDPSLP 729 Query: 576 VLVQKGTLSKGNILVVGDQWGKIRALFNDRGQ--GISKAVPSM 616 ++ GTL+ G +L D+ K+ + DR G+ VPSM Sbjct: 730 EVIYDGTLANGALLPYMDRLTKLVSK-GDRAAIGGLLGPVPSM 771 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 25.4 bits (54), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 658 MARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSL--GALKNSEVCLSI 715 +A + HS +V S +K FP + D + +++A++ L G L + +C Sbjct: 596 IAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLIC--- 652 Query: 716 VHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLA 753 VG +T+++L A AV+ G V + +L Sbjct: 653 --GDVG-FGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 >gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 25.4 bits (54), Expect = 4.0, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 253 YKKVRIAVAADVDEEGGASRGRSLSAMRRRQEKFRRNQ 290 + +++A D RGR++S+M R E ++NQ Sbjct: 70 FHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQ 107 >gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 25.4 bits (54), Expect = 4.2, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 15/94 (15%) Query: 395 GKTSLLDAIRKADVAKGEIGGITQHI----GAYQVAYQGK----------NITFLDTPGH 440 GKTS++ R + + G++G + HI G+ + + Q + N D P Sbjct: 28 GKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 Query: 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIES 474 E+ A VT +A L LA D+ + Q ES Sbjct: 88 GNL-EVNANAGDVTGVAKLKLAVDDVLSMQFAES 120 >gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 25.0 bits (53), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 29/59 (49%) Query: 715 IVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSI 773 ++ S I + SL A A IFG + S + + K+E KIL I D+L+SI Sbjct: 425 VLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSI 483 >gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62] Length = 158 Score = 24.6 bits (52), Expect = 7.3, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 16/68 (23%) Query: 530 NLNLDKL--LDAILLQAEMLDLKT-SINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586 NLN ++ L+ I+ +AE++D+ T S +R A G V LV+K + K Sbjct: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS-------------LVEKNSGDKK 103 Query: 587 NILVVGDQ 594 N +VGDQ Sbjct: 104 NYQIVGDQ 111 >gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 686 Score = 24.6 bits (52), Expect = 7.5, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 242 TRNKVGDDDKKYKKVRIAVAADVD 265 TR++ ++D +Y+KV I ADVD Sbjct: 524 TRSQYREEDLRYEKVIIMTDADVD 547 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.313 0.130 0.346 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 509,943 Number of Sequences: 1233 Number of extensions: 20915 Number of successful extensions: 85 Number of sequences better than 100.0: 27 Number of HSP's better than 100.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 36 length of query: 884 length of database: 328,796 effective HSP length: 82 effective length of query: 802 effective length of database: 227,690 effective search space: 182607380 effective search space used: 182607380 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 43 (21.2 bits)