HHsearch alignment for GI: 254780788 and conserved domain: COG0539
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis].
Probab=98.03 E-value=5.1e-05 Score=56.14 Aligned_cols=112 Identities=28% Similarity=0.352 Sum_probs=67.7
Q ss_pred ECHHHHHHHC-CCCCCCCEEEEEC---CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 3489998628-8986473799850---84----56207999999999999999999887799998520838999998405
Q gi|254780788|r 79 ISLKVARDRD-PSIDIGGVVSDPL---PP----MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 (526)
Q Consensus 79 I~l~~A~~~~-~~~~iGD~i~~~i---~~----~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e 150 (526)
T Consensus 134 ~S~v~~r~v~d~~~~~Gk~~~~kiie~d~~~n~vv~SrR~~~e~-------~~~~~r~e~~~~l--~~G~vV~G~V~~It 204 (541)
T COG0539 134 GSLVDVRPVRDLDPLIGKELEFKILELDKKRNNVVLSRRAVLEE-------ERSEQREELLNKL--EVGEVVEGVVKNIT 204 (541)
T ss_pred HHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEHHHHHHH-------HHHHHHHHHHHCC--CCCCEEEEEEEEEE
T ss_conf 78715452346523478658999999853348478771777667-------7888799997247--88766999999861
Q ss_pred CCEEEEEECCCEEEEEHHHC------CCCCCCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf 76389995793587447874------8875115276699999761135870289871
Q gi|254780788|r 151 YGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 (526)
Q Consensus 151 ~~~iiVdlg~~ea~Lp~~e~------ip~E~~~~Gdrika~i~~V~~~~rgpqi~lS 201 (526)
T Consensus 205 ~~GafVdigGvdGLlHiseiS~~rv~~P~~vvkvGd~VkvkVi~~D~e~~--RVsLS 259 (541)
T COG0539 205 DYGAFVDIGGVDGLLHISEISWKRVDHPSEVVKVGDEVKVKVISLDEERG--RVSLS 259 (541)
T ss_pred CCCEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCC--EEEEE
T ss_conf 57479992571668864760655558989953569889999999726788--69999