HHsearch alignment for GI: 254780788 and conserved domain: COG1097
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis].
Probab=94.89 E-value=0.12 Score=31.36 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=53.4
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHHHC----------CCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 99985208389999984057638999579-3587447874----------887511527669999976113587
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDET----------ISRENLRPGDRVKSYIYDVRREQR 194 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~e~----------ip~E~~~~Gdrika~i~~V~~~~r 194 (526)
T Consensus 58 g~YiP~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~~~ 131 (239)
T COG1097 58 GRYIPEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDRDGE 131 (239)
T ss_pred CCCCCCCCCEEEEEEEEECCCCEEEECCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
T ss_conf 75248889999999999715633897289532374266620022554223452226768789999997267775