HHsearch alignment for GI: 254780788 and conserved domain: COG1530
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis].
Probab=92.04 E-value=0.33 Score=28.11 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=53.0
Q ss_pred HHCCCEEEEEEEECCCC--EEEEEECC-CEEEEEHHHCCC----------CCCCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 52083899999840576--38999579-358744787488----------751152766999997611358702898
Q gi|254780788|r 136 DKVGEIISGTVKRVEYG--NVIVDLGN-SDGVIRRDETIS----------RENLRPGDRVKSYIYDVRREQRGPQVL 199 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~--~iiVdlg~-~ea~Lp~~e~ip----------~E~~~~Gdrika~i~~V~~~~rgpqi~ 199 (526)
T Consensus 35 ~~~gniy~grv~~i~p~~~aafvdig~~r~gfl~~~~~~~~~~~~~~~~i~~~lr~~~~~~Vqv~ke~~G~Kga~lT 111 (487)
T COG1530 35 QIVGNIYKGRVTRVLPSLEAAFVDIGLERNGFLHLSEIVPYFRAVLEEKIKVRLRGGQATLVQVVKEPRGTKGARLT 111 (487)
T ss_pred EEECCCEEEEECCCCCCCHHHEEECCCCCCCEEEECCCCHHHHHCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCE
T ss_conf 63067168886231766322205516876606884105534420002350055417862899998625766034212