HHsearch alignment for GI: 254780788 and conserved domain: COG1855

>COG1855 ATPase (PilT family) [General function prediction only].
Probab=93.66  E-value=0.35  Score=27.92  Aligned_cols=299  Identities=22%  Similarity=0.292  Sum_probs=147.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEE--CCCCCCCCEECHHHH--HHHCCCCCCC
Q ss_conf             239999999999999999999613687453599974998839999998851--767787532348999--8628898647
Q gi|254780788|r   19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQISLKVA--RDRDPSIDIG   94 (526)
Q Consensus        19 EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VV--edved~~~eI~l~~A--~~~~~~~~iG   94 (526)
T Consensus       178 d~pl~~~ele~ia~eIi~~a~~~-----~~sfIEi~r~GatVvQlrn~RIvIarPPfSd~~EITavRPvvk~~ledY~L~  252 (604)
T COG1855         178 DKPLTREELEEIAREIIERAKRD-----PDSFIEIDRPGATVVQLRNYRIVIARPPFSDRWEITAVRPVVKLSLEDYGLS  252 (604)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCEEEEECCEEEEEECCCCCCCEEEEEEEEEEEEEHHHCCCC
T ss_conf             76688999999999999987528-----6764898069966998435799994599877628999713699605542879


Q ss_pred             CEEEEECCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-CE------------EEEEE
Q ss_conf             37998508456207---9999999999999999998877999985208389999984057-63------------89995
Q gi|254780788|r   95 GVVSDPLPPMDFGR---VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GN------------VIVDL  158 (526)
Q Consensus        95 D~i~~~i~~~~fgR---iaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~-~~------------iiVdl  158 (526)
T Consensus       253 dkl~eRL~eraeGILIAG~PGaGKsTFaqA---------lAefy~~~GkiV----KTmEsPRDl~v~~eITQYs~l~g~m  319 (604)
T COG1855         253 DKLKERLEERAEGILIAGAPGAGKSTFAQA---------LAEFYASQGKIV----KTMESPRDLQVSPEITQYSPLEGDM  319 (604)
T ss_pred             HHHHHHHHHHHCCEEEECCCCCCHHHHHHH---------HHHHHHHCCCEE----EECCCCCCCCCCHHHHHCCCCCCCH
T ss_conf             899999886416469956999974689999---------999998669688----6324751356886663206445645


Q ss_pred             CCCEEE--E-EHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCH-----HHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf             793587--4-4787488751152766999997611358702898715988-----9999999976677755808785663
Q gi|254780788|r  159 GNSDGV--I-RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP-----QFMVKLFHMEVPEIYNGIVQVKAVS  230 (526)
Q Consensus       159 g~~ea~--L-p~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p-----~~l~~Lf~~EVPEI~~G~ieIk~ia  230 (526)
T Consensus       320 e~t~DiLLLvRPDYTIyDEm-R~t~DF~vy-aDmRLAGVGMVGVVHATrpIDAiQR~igRVELG~IPqIvDTVIfI~---  394 (604)
T COG1855         320 EKTADILLLVRPDYTIYDEM-RKTEDFQVY-ADLRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIK---  394 (604)
T ss_pred             HHHCCEEEEECCCCEEHHHH-HCCCCEEEE-EEEECCCCCEEEEEECCCHHHHHHHHHCCEEECCCCCCEEEEEEEE---
T ss_conf             55233799965884510334-156661676-6500115754768961780589998644063146641226899981---


Q ss_pred             CCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHH--------HHHHH------CCCCEEEEECCCCH--------HHHH-
Q ss_conf             1677503499994089988127655488621788--------99862------77826799559878--------9999-
Q gi|254780788|r  231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA--------VVTEL------RDEKIDIVVWSPDS--------ATFV-  287 (526)
Q Consensus       231 R~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~--------I~~EL------~gEkIDii~ws~d~--------~~fi-  287 (526)
T Consensus       395 --~G~V~kVy~ls~tVKV-----P~Gm~EeDLARPVIeVrDfeTg~~eYEIYtfGEqvvVvPv~~~~~~~~~~~a~~~i~  467 (604)
T COG1855         395 --DGEVAKVYELSYTVKV-----PTGMTEEDLARPVIEVRDFETGELEYEIYTFGEQVVVVPVKEEEESPALKLAEEEIE  467 (604)
T ss_pred             --CCEEEEEEEEEEEEEC-----CCCCCHHHHCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             --8818899999999976-----788786771585389765036854689997164799997568777726677999999


Q ss_pred             --HHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHH
Q ss_conf             --97628665424898756787999985342211025442789999986167457855220011
Q gi|254780788|r  288 --INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI  349 (526)
Q Consensus       288 --~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~  349 (526)
T Consensus       468 ~~i~r~~p~-~~eVe~-~gd~~avv~vpe~~i~~vigk~g~~i~~ie~klgi~I~v~~~e~~~~  529 (604)
T COG1855         468 REIKRYLPG-DVEVEV-VGDGRAVVKVPEKYIPKVIGKGGKRIKEIEKKLGIKIDVKPLEEEEE  529 (604)
T ss_pred             HHHHHHCCC-CCEEEE-ECCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCC
T ss_conf             999974799-825999-61871799948788567761055318999987498068888665666