HHsearch alignment for GI: 254780788 and conserved domain: COG2996
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].
Probab=92.24 E-value=0.7 Score=25.71 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=78.9
Q ss_pred EECHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCEEEE
Q ss_conf 2348999862889864737998508456207999999999999999999887799998520838999998405-763899
Q gi|254780788|r 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIV 156 (526)
Q Consensus 78 eI~l~~A~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e-~~~iiV 156 (526)
T Consensus 31 ~ilL~k~~~~~~e~evGdev~vFiY~D~~~rl~aTt~~p------------------~~tvg~~g~~~Vv~v~~~lGaFl 92 (287)
T COG2996 31 TILLPKSEPEEDELEVGDEVTVFIYVDSEDRLIATTREP------------------KATVGEYGWLKVVEVNKDLGAFL 92 (287)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCEEHEEECC------------------EEEECCEEEEEEEEECCCCCEEE
T ss_conf 786256677678511376899999988877630101041------------------37405323799998737751589
Q ss_pred EEC-CCEEEEEHHHCCCCCC--CCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 957-9358744787488751--1527669999976113587028987159889999999
Q gi|254780788|r 157 DLG-NSDGVIRRDETISREN--LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 (526)
Q Consensus 157 dlg-~~ea~Lp~~e~ip~E~--~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf 212 (526)
T Consensus 93 D~Gl~KDl~vp~~elp~~~~~wpq~Gd~l~v~l~~Dkk~-R---i~g~~a~~~~l~~l~ 147 (287)
T COG2996 93 DWGLPKDLLVPLDELPTLKSLWPQKGDKLLVYLYVDKKG-R---IWGTLAIEKILENLA 147 (287)
T ss_pred ECCCCCCEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCC-C---EEEEECCHHHHHHCC
T ss_conf 659870036162536443123778798999999985678-4---777733155787617