HHsearch alignment for GI: 254780788 and conserved domain: PRK00087

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.

Probab=98.76  E-value=7.7e-07  Score=69.54  Aligned_cols=72  Identities=31%  Similarity=0.509  Sum_probs=37.4

Q ss_pred             HCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHH
Q ss_conf             20838999998405763899957-935874478748------87511527669999976113587028987159889999
Q gi|254780788|r  137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV  209 (526)
Q Consensus       137 r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~  209 (526)
T Consensus       303 ~~G~iV~G~Vv~v~~~~v~VDiG~KseG~Ip~~E~~~~~~~~~~~~~kvGDei~v~V~k~ed~~G--~i~LS~kka~~~~  380 (670)
T PRK00087        303 RRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLEELTKDEDSSLKESVKVGDEIEVKVLKLENEDG--YVVLSKKEADREK  380 (670)
T ss_pred             CCCCEEEEEEEEEECCEEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCC--CEEEEHHHHHHHH
T ss_conf             78987999999993898999836784368889993667677733457999989999999868998--2998889999888


Q ss_pred             H
Q ss_conf             9
Q gi|254780788|r  210 K  210 (526)
Q Consensus       210 ~  210 (526)
T Consensus       381 ~  381 (670)
T PRK00087        381 A  381 (670)
T ss_pred             H
T ss_conf             7