HHsearch alignment for GI: 254780788 and conserved domain: PRK00087
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.
Probab=98.21 E-value=1.9e-05 Score=59.24 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=101.4
Q ss_pred CCCCCEECHHHHH-----HHCCCCCCCCEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 7875323489998-----628898647379985084--562079999999999999999998877999985208389999
Q gi|254780788|r 73 ENYTCQISLKVAR-----DRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 (526)
Q Consensus 73 ed~~~eI~l~~A~-----~~~~~~~iGD~i~~~i~~--~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~ 145 (526)
T Consensus 326 ~KseG~Ip~~E~~~~~~~~~~~~~kvGDei~v~V~k~ed~~G~i~LS~kka-----~~~~~w~~l~~a~e~--~e~V~g~ 398 (670)
T PRK00087 326 YKSEGVIPLEELTKDEDSSLKESVKVGDEIEVKVLKLENEDGYVVLSKKEA-----DREKAWKELEEAFEN--GETVKGK 398 (670)
T ss_pred CCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEHHHH-----HHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 784368889993667677733457999989999999868998299888999-----988879999999868--9869999
Q ss_pred EEECCCCEEEEEECCCEEEEEHHHCCCC--CC--CCCCCEEEEEEEEECCCCCEEEEEEECCCH------HHHHHHHHHH
Q ss_conf 9840576389995793587447874887--51--152766999997611358702898715988------9999999976
Q gi|254780788|r 146 VKRVEYGNVIVDLGNSDGVIRRDETISR--EN--LRPGDRVKSYIYDVRREQRGPQVLLSRTHP------QFMVKLFHME 215 (526)
Q Consensus 146 V~r~e~~~iiVdlg~~ea~Lp~~e~ip~--E~--~~~Gdrika~i~~V~~~~rgpqi~lSRt~p------~~l~~Lf~~E 215 (526)
T Consensus 399 V~~~vKGG~~V~i~gi~~FiP~Sq~~~~~~~d~~~~vG~~~~~kIie~d~~k~r~niV~Srr~vlee~~~~~k~~~~~-- 476 (670)
T PRK00087 399 VKEVVKGGLLVDYGGVRAFLPASHVELGYVEDLSAYKGQELEVKIIEFDKKRKKTKVVLSRKALLKEEKEKQKEETWN-- 476 (670)
T ss_pred EEEEECCCEEEEECCEEEEECHHHCCCCCCCCHHHHCCCEEEEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHH--
T ss_conf 999985859999899899802276156656772787697489999998444576748978099999889999999997--
Q ss_pred HHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCC
Q ss_conf 67775580878566316775034999940899881276554886
Q gi|254780788|r 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 (526)
Q Consensus 216 VPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rG 259 (526)
T Consensus 477 --~l~~G~~-v~G-----------~V----~~i~~~GaFvdlgG 502 (670)
T PRK00087 477 --SLEEGDV-VEG-----------EV----KRLTDFGAFVDIGG 502 (670)
T ss_pred --HCCCCCE-EEE-----------EE----EEEECCCEEEEECC
T ss_conf --4889988-999-----------99----99973407999779