HHsearch alignment for GI: 254780788 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=97.17 E-value=0.018 Score=37.38 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=73.8
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCCHHHH---HHCCCCCCHHHHHH
Q ss_conf 75058888776530588999999999999999-------------999998987754284356---64077999899999
Q gi|254780788|r 387 LACVKISEIASIEGFDEETAVEIQGRAREYLE-------------GIDITLQKKIRELGVSEE---LCSIPGIDSKIKVA 450 (526)
Q Consensus 387 Ia~a~~eeL~~IeGfdee~a~eL~~rA~~~L~-------------~~~~~~~e~~~e~~~~e~---L~~l~gl~~~~~~~ 450 (526)
T Consensus 548 i~E~~~~~I~~~y~v~~G~lq~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~l~~Rl~~Gv~~eLl~L~~I~gigr~RAR~ 627 (674)
T PRK01172 548 ISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIYKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARR 627 (674)
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHH
T ss_conf 73899999999869894899999999999999999999861199999999999999819868889771889999899999
Q ss_pred HHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 998798478896532677521231234443211245334358899999999998412257
Q gi|254780788|r 451 LGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 (526)
Q Consensus 451 L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~~g 510 (526)
T Consensus 628 Ly~aG~~s~~dia~a~~~~L~~i~-----------------g~~~~~A~~Ii~~A~~l~~ 670 (674)
T PRK01172 628 LYDAGFKTVDDIARSSPERIKKIY-----------------GFSDTLANAIVNRAMKISS 670 (674)
T ss_pred HHHCCCCCHHHHHHCCHHHHHHCC-----------------CCCHHHHHHHHHHHHHHHH
T ss_conf 998699999999709998987641-----------------9899999999999997775