HHsearch alignment for GI: 254780788 and conserved domain: PRK04163
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional.
Probab=96.14 E-value=0.025 Score=36.43 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=52.1
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCCC----------CCCCCCCCEEEEEEEEECCCCC
Q ss_conf 9998520838999998405763899957-9358744787488----------7511527669999976113587
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS----------RENLRPGDRVKSYIYDVRREQR 194 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~ip----------~E~~~~Gdrika~i~~V~~~~r 194 (526)
T Consensus 56 grY~P~~GD~VIG~V~~v~~~~W~VDI~s~~~a~L~~s~~~~r~~~~~~~~mr~~l~~GDlI~ArV~~v~~~~~ 129 (232)
T PRK04163 56 GKYIPKKGDLVIGKVTDVGFSGWEVDINSPYKAILPVSEVLGRPVDVESTDLRKYLDIGDYIIAKVKDVDETKD 129 (232)
T ss_pred CCCCCCCCCEEEEEEEEECCCEEEEECCCCCEEEECHHHCCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf 51058769989999998318717998699605585244456655556435677517889889999999668997