HHsearch alignment for GI: 254780788 and conserved domain: PRK08563

>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional.

Probab=96.62  E-value=0.0085  Score=39.80  Aligned_cols=74  Identities=28%  Similarity=0.485  Sum_probs=61.3

Q ss_pred             HHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC-----------------CCCCCCCEEEEEEEEEC---CCC
Q ss_conf             9852083899999840576389995793587447874887-----------------51152766999997611---358
Q gi|254780788|r  134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-----------------ENLRPGDRVKSYIYDVR---REQ  193 (526)
Q Consensus       134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~-----------------E~~~~Gdrika~i~~V~---~~~  193 (526)
T Consensus        77 frPf~~EVv~g~V~~~~~~G~fv~~Gp~d~~vh~sqi~dd~~~fD~~~~~~ig~~s~~~i~~Gd~VR~RIv~vs~~~~~~  156 (182)
T PRK08563         77 FKPELQEVVEGEVVEVVEFGAFVRIGPVDGLLHISQIMDDYISYDEKNGALIGKESKRTLKVGDVVRARIVAVSLNEREP  156 (182)
T ss_pred             EECCCCCEEEEEEEEEECCEEEEEEECCCEEEEHHHCCCCCCEECCCCCEEEEECCCEEECCCCEEEEEEEEEECCCCCC
T ss_conf             94136848999999996676999984661176099947776238365651999068649828998999999977188887


Q ss_pred             CEEEEEEECCCHHH
Q ss_conf             70289871598899
Q gi|254780788|r  194 RGPQVLLSRTHPQF  207 (526)
Q Consensus       194 rgpqi~lSRt~p~~  207 (526)
T Consensus       157 ~~~kIglTmrq~gL  170 (182)
T PRK08563        157 RDSKIGLTMRQPGL  170 (182)
T ss_pred             CCCEEEEEECCCCC
T ss_conf             76626689538887