HHsearch alignment for GI: 254780788 and conserved domain: PRK09202
>PRK09202 nusA transcription elongation factor NusA; Validated.
Probab=100.00 E-value=0 Score=1079.23 Aligned_cols=427 Identities=55% Similarity=0.923 Sum_probs=418.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHH
Q ss_conf 88999999999986239999999999999999999613687453599974998839999998851767787532348999
Q gi|254780788|r 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA 84 (526)
Q Consensus 5 ~~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A 84 (526)
T Consensus 2 m~~e~l~~i~~la~EK~I~~e~v~~aie~Al~~A~kK~~~~~~~i~V~Id~~tG~i~v~~~~~VVe~v~d~~~eI~L~~A 81 (428)
T PRK09202 2 MSKELLLAIEAVAREKGIDREVIIEALEEALATAYKKKYGPEANVRVEIDRKTGDIEVFRRWEVVEEVEDPAKEISLEDA 81 (428)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEHHHH
T ss_conf 74999999999998759699999999999999998442499676799998889819999999853787787647459999
Q ss_pred HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 86288986473799850845620799999999999999999988779999852083899999840576389995793587
Q gi|254780788|r 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 (526)
Q Consensus 85 ~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~ 164 (526)
T Consensus 82 ~~~~p~~~iGd~i~~~i~~~~fgRiaaq~AkQvi~QkireaEr~~i~~ef~~r~Geiv~G~V~r~~~~~i~Vdlg~~ea~ 161 (428)
T PRK09202 82 RKIDPDAEVGDYIEEEIEPIDFGRIAAQAAKQVIVQKIREAERERVYEEYKDRVGEIITGTVKRVERGNIIVDLGRAEAI 161 (428)
T ss_pred HHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCEEEE
T ss_conf 86589875186688865834258899999999999999999999999999873298899999997278389997882575
Q ss_pred EEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 44787488751152766999997611358702898715988999999997667775580878566316775034999940
Q gi|254780788|r 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 (526)
Q Consensus 165 Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~ 244 (526)
T Consensus 162 Lp~~e~ip~E~~~~Gdrik~~i~~V~~~~kg~qi~lSRt~p~~v~~Lfe~EVPEI~dG~IeIk~iaRepG~RtKiAV~s~ 241 (428)
T PRK09202 162 LPRDEQIPRENFRPGDRVRAYVYEVRKEARGPQIILSRTHPEFLKKLFEQEVPEIAEGLIEIKAIARDPGSRAKIAVKSN 241 (428)
T ss_pred CCHHHCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECC
T ss_conf 64787699866799987999872021258985799954878999999986456853882999986136787237999725
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 89988127655488621788998627782679955987899999762866542489875678799998534221102544
Q gi|254780788|r 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR 324 (526)
Q Consensus 245 d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~ 324 (526)
T Consensus 242 d~~iDpVGAcVG~rGsRI~~I~~EL~gEkIDIi~~s~d~~~fi~nAlsPA~v~~V~ide~~~~~~VvV~d~qlSlAIGk~ 321 (428)
T PRK09202 242 DKRIDPVGACVGMRGSRIQAISNELNGEKIDIILWSDDPAQFIINALSPAEVSSIVVDEDKHSMDVVVPDDQLSLAIGKN 321 (428)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCHHHHHCCC
T ss_conf 99978513777788642999998746776899967888899999817942121899727788899998865224775778
Q ss_pred HHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
Q ss_conf 27899999861674578552200110100122100011122588846788887732111477750588887765305889
Q gi|254780788|r 325 GQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 (526)
Q Consensus 325 GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee 404 (526)
T Consensus 322 GqNvrLAs~Ltgw~IdI~s~~~~~e~~~~e~~~~~~~f~~~~~~~e~~~~~----------------------------- 372 (428)
T PRK09202 322 GQNVRLASKLTGWKIDIMTEEEASEKQQAEFARLIDLFMEALDVDEDIAQL----------------------------- 372 (428)
T ss_pred CEEHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-----------------------------
T ss_conf 685999999779869995589999987778888999877752622888887-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999999999999998987754284356640779998999999987984788965326775212312344432112
Q gi|254780788|r 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 (526)
Q Consensus 405 ~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~ 484 (526)
T Consensus 373 -----------------------------~~~l~~~~~~~~~~~~~l~~~g~~~~edl~~~~~del~~~~---------- 413 (428)
T PRK09202 373 -----------------------------ADDLLNLEGLDPELAFKLAEKGVKTLEDLAELAVDELIDIE---------- 413 (428)
T ss_pred -----------------------------HHHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHCC----------
T ss_conf -----------------------------77786456999999999998699879999657988896377----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 4533435889999999999841
Q gi|254780788|r 485 DGFLSSLGTPKDQVESMIIHAR 506 (526)
Q Consensus 485 ~gil~~~~l~~~~A~~lIM~AR 506 (526)
T Consensus 414 -------~~~~e~a~~li~~ar 428 (428)
T PRK09202 414 -------GLDEEEAGELIMAAR 428 (428)
T ss_pred -------CCCHHHHHHHHHHCC
T ss_conf -------989999999998419