HHsearch alignment for GI: 254780788 and conserved domain: PRK10811
>PRK10811 rne ribonuclease E; Reviewed.
Probab=93.44 E-value=0.24 Score=29.14 Aligned_cols=162 Identities=22% Similarity=0.326 Sum_probs=97.8
Q ss_pred HHCCCEEEEEEEECCCC--EEEEEEC-CCEEEEEHHHCCCC---------------CCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 52083899999840576--3899957-93587447874887---------------511527669999976113587028
Q gi|254780788|r 136 DKVGEIISGTVKRVEYG--NVIVDLG-NSDGVIRRDETISR---------------ENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~--~iiVdlg-~~ea~Lp~~e~ip~---------------E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
T Consensus 36 q~kgNIYKGkV~rVePgLqAAFVDiG~eR~GFLp~kEI~~ey~~~~~~~~grp~I~dvLkeGQeILVQV~KEp~GtKGAr 115 (1063)
T PRK10811 36 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 115 (1063)
T ss_pred CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 34054268999785688605777238975542168882865426553435687878836799989999966787897836
Q ss_pred EE---------------------EECCCH-----HHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECC------
Q ss_conf 98---------------------715988-----9999999976677755808785663167750349999408------
Q gi|254780788|r 198 VL---------------------LSRTHP-----QFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD------ 245 (526)
Q Consensus 198 i~---------------------lSRt~p-----~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d------ 245 (526)
T Consensus 116 LTT~ISLaGRYLVLMPn~~~~gGISRKIe~eER~rLkeiL~~L~~Pe-g~Gl-----IVRTAa~g~s~eeL~~Dl~~Ll~ 189 (1063)
T PRK10811 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPE-GMGL-----IVRTAGVGKSAEALQWDLSFRLK 189 (1063)
T ss_pred EEEEEEECCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCC-CCEE-----EEECCCCCCCHHHHHHHHHHHHH
T ss_conf 64215434201898248987761514789078999999997135788-8269-----99757689999999999999999
Q ss_pred --------CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-HHHHHH---HHC-CCCCCCEEEECC
Q ss_conf --------9988127655488621788998627782679955987-899999---762-866542489875
Q gi|254780788|r 246 --------SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD-SATFVI---NAL-RPAIVTKVVLDE 303 (526)
Q Consensus 246 --------~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d-~~~fi~---nAl-~PA~v~~v~~de 303 (526)
T Consensus 190 ~W~~I~k~~~~~~AP~LIyqE~~li~R~iRD~l~~di~eIiVDd~e~ye~ak~~i~~l~~P~~~~kVklY~ 260 (1063)
T PRK10811 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT 260 (1063)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999999735899868753754899999986217778899969999999999999744733337458857