HHsearch alignment for GI: 254780788 and conserved domain: PRK10811

>PRK10811 rne ribonuclease E; Reviewed.
Probab=93.44  E-value=0.24  Score=29.14  Aligned_cols=162  Identities=22%  Similarity=0.326  Sum_probs=97.8

Q ss_pred             HHCCCEEEEEEEECCCC--EEEEEEC-CCEEEEEHHHCCCC---------------CCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf             52083899999840576--3899957-93587447874887---------------511527669999976113587028
Q gi|254780788|r  136 DKVGEIISGTVKRVEYG--NVIVDLG-NSDGVIRRDETISR---------------ENLRPGDRVKSYIYDVRREQRGPQ  197 (526)
Q Consensus       136 ~r~Geiv~G~V~r~e~~--~iiVdlg-~~ea~Lp~~e~ip~---------------E~~~~Gdrika~i~~V~~~~rgpq  197 (526)
T Consensus        36 q~kgNIYKGkV~rVePgLqAAFVDiG~eR~GFLp~kEI~~ey~~~~~~~~grp~I~dvLkeGQeILVQV~KEp~GtKGAr  115 (1063)
T PRK10811         36 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA  115 (1063)
T ss_pred             CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf             34054268999785688605777238975542168882865426553435687878836799989999966787897836


Q ss_pred             EE---------------------EECCCH-----HHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECC------
Q ss_conf             98---------------------715988-----9999999976677755808785663167750349999408------
Q gi|254780788|r  198 VL---------------------LSRTHP-----QFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD------  245 (526)
Q Consensus       198 i~---------------------lSRt~p-----~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d------  245 (526)
T Consensus       116 LTT~ISLaGRYLVLMPn~~~~gGISRKIe~eER~rLkeiL~~L~~Pe-g~Gl-----IVRTAa~g~s~eeL~~Dl~~Ll~  189 (1063)
T PRK10811        116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPE-GMGL-----IVRTAGVGKSAEALQWDLSFRLK  189 (1063)
T ss_pred             EEEEEEECCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCC-CCEE-----EEECCCCCCCHHHHHHHHHHHHH
T ss_conf             64215434201898248987761514789078999999997135788-8269-----99757689999999999999999


Q ss_pred             --------CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-HHHHHH---HHC-CCCCCCEEEECC
Q ss_conf             --------9988127655488621788998627782679955987-899999---762-866542489875
Q gi|254780788|r  246 --------SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD-SATFVI---NAL-RPAIVTKVVLDE  303 (526)
Q Consensus       246 --------~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d-~~~fi~---nAl-~PA~v~~v~~de  303 (526)
T Consensus       190 ~W~~I~k~~~~~~AP~LIyqE~~li~R~iRD~l~~di~eIiVDd~e~ye~ak~~i~~l~~P~~~~kVklY~  260 (1063)
T PRK10811        190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT  260 (1063)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             99999999735899868753754899999986217778899969999999999999744733337458857