HHsearch alignment for GI: 254780788 and conserved domain: PRK12328
>PRK12328 nusA transcription elongation factor NusA; Provisional.
Probab=100.00 E-value=0 Score=975.52 Aligned_cols=349 Identities=33% Similarity=0.548 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECC-----CCCCCCEECH
Q ss_conf 99999999998623999999999999999999961368745359997499883999999885176-----7787532348
Q gi|254780788|r 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE-----VENYTCQISL 81 (526)
Q Consensus 7 ~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVed-----ved~~~eI~l 81 (526)
T Consensus 2 ~Ell~~i~~la~EKgI~~e~i~~aie~Al~~A~kK~~g~~~~i~V~id~~tG~i~i~~~~~VVed~de~~~~d~~~eIsL 81 (375)
T PRK12328 2 EKISDIIESIAYEKGLPKEMVSEAVKEALINTAKRELGPLYEYEVVIDPKNKTLKLYQKIEVVADDDERLINDPEKFISL 81 (375)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCEECH
T ss_conf 58999999999775969999999999999999734049835679999889985999999999768864454685443029
Q ss_pred HHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-CEEEEEECC
Q ss_conf 9998628898647379985084562079999999999999999998877999985208389999984057-638999579
Q gi|254780788|r 82 KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGN 160 (526)
Q Consensus 82 ~~A~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~-~~iiVdlg~ 160 (526)
T Consensus 82 ~eA~~~~~~~~iGd~i~~~i~~~~FgRiAaq~AKQvi~QkireaEr~~i~~efk~r~GeiV~G~V~r~~~~~~~~vdlg~ 161 (375)
T PRK12328 82 SKAKEMDPDVEIGDELSYELSLENMGRTAANTLFKELEYHIQRLLEDSIFEKYKEKVGSVVFGTVVRVDNEENTFIEIDE 161 (375)
T ss_pred HHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCC
T ss_conf 99987489984178899842844541899999999999999999999999999864294899999999658848997398
Q ss_pred CEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCC-EEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEE
Q ss_conf 3587447874887511527669999976113587-028987159889999999976677755808785663167750349
Q gi|254780788|r 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 (526)
Q Consensus 161 ~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~r-gpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKI 239 (526)
T Consensus 162 ~ea~Lp~~eqip~E~y~~Gdrik~~i~~V~~~~~~gpqI~lSRt~p~fv~~LFe~EVPEI~dG~VeIk~IaRepG~RtKI 241 (375)
T PRK12328 162 IRAILPMKNRIKGEKFKVGDVVKAVLRRVKIDKKNGIKLELSRTSPKFLEALLELEVPEIKDGEVIIIHCARIPGERAKV 241 (375)
T ss_pred CEEEECHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEE
T ss_conf 17980277638865589998699999998727899958999679889999999988899848968999985378874069
Q ss_pred EEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCC
Q ss_conf 99940899881276554886217889986277826799559878999997628665424898756787999985342211
Q gi|254780788|r 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 (526)
Q Consensus 240 AV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~ 319 (526)
T Consensus 242 AV~S~d~~iDpVGAcVG~kG~RI~~I~~EL~gEkIDii~~s~d~~~fi~nALsPA~V~~V~i~e~~~~a~viV~~~qlSl 321 (375)
T PRK12328 242 ALFSNSANIDPVGATVGVKGVRINAVSKELNGENIDCIEYSNIPEIFIARALAPAIILSVKIEKIPKKAIVTLPSEQKSK 321 (375)
T ss_pred EEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCHHHHH
T ss_conf 99925998674047888886309999998579627899778888999986378553018999568887999988014337
Q ss_pred CCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCC
Q ss_conf 025442789999986167457855220011010012
Q gi|254780788|r 320 AIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 (526)
Q Consensus 320 AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~ 355 (526)
T Consensus 322 AIGk~GqNvrLAskLtgw~IDI~s~~~~~e~~~~~~ 357 (375)
T PRK12328 322 AIGKNGINIRLASMLTGYEIELNEIGSVKENASNES 357 (375)
T ss_pred HHCCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHHH
T ss_conf 626998719999997798799867788778876343