HHsearch alignment for GI: 254780788 and conserved domain: PRK13806
>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=98.28 E-value=2.9e-05 Score=57.95 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=77.7
Q ss_pred CCCEECHHHHHHHCC--CCCCCCEEEEECCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 753234899986288--9864737998508456-----207999999999999999999887799998520838999998
Q gi|254780788|r 75 YTCQISLKVARDRDP--SIDIGGVVSDPLPPMD-----FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 (526)
Q Consensus 75 ~~~eI~l~~A~~~~~--~~~iGD~i~~~i~~~~-----fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~ 147 (526)
T Consensus 57 sEG~Ip~~E~~d~~~~~~~kvGD~Iev~V~~~~dgei~LSr~~~~---~~--------~~~~l~ea~e--~~~~V~g~I~ 123 (489)
T PRK13806 57 VDGVIDRRELEDAEGNLPYAVGDRLDLYVVAVNGGEIRLSKAMGG---QG--------GAAVLEEARD--NGVPVEGKVT 123 (489)
T ss_pred EEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEHHHHH---HH--------HHHHHHHHHH--CCCEEEEEEE
T ss_conf 289958999257557756589989999999964981899889988---87--------8999999975--8986999999
Q ss_pred ECCCCEEEEEECCCEEEEEHHHCCCC--CC--CCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 40576389995793587447874887--51--15276699999761135870289871598
Q gi|254780788|r 148 RVEYGNVIVDLGNSDGVIRRDETISR--EN--LRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 (526)
Q Consensus 148 r~e~~~iiVdlg~~ea~Lp~~e~ip~--E~--~~~Gdrika~i~~V~~~~rgpqi~lSRt~ 204 (526)
T Consensus 124 ~~vKGG~~V~i~Gv~aFlP~Sqid~r~v~d~~~~vGk~~~~~Iikid~~~~--nIVvSRR~ 182 (489)
T PRK13806 124 GTCKGGFNVEVLRRRAFCPVSQIDLHQVEDPESFVGQTFQFLITRVEQNGR--NIVVSRRA 182 (489)
T ss_pred EEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCEEEEEEEEECCCCC--EEEEEHHH
T ss_conf 998675999989977642316604666678589679658999999705687--07866899