HHsearch alignment for GI: 254780788 and conserved domain: TIGR00575

>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=96.24  E-value=0.06  Score=33.59  Aligned_cols=285  Identities=19%  Similarity=0.271  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHCC-CEEEEEEEECCC-CEE-----E--EEECCC---EEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCE
Q ss_conf             877999985208-389999984057-638-----9--995793---5874478748875115276699999761135870
Q gi|254780788|r  128 DRQYLEFKDKVG-EIISGTVKRVEY-GNV-----I--VDLGNS---DGVIRRDETISRENLRPGDRVKSYIYDVRREQRG  195 (526)
Q Consensus       128 ~~i~~ef~~r~G-eiv~G~V~r~e~-~~i-----i--Vdlg~~---ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rg  195 (526)
T Consensus       315 WAiAYKFpa~e~~T~L~dv~~qVGRTG~iTPvA~LePV~vaG~~Vs~ATLHN~D~I~~kdiriGD~Vvv~-------kAG  387 (706)
T TIGR00575       315 WAIAYKFPAEEAQTKLLDVVVQVGRTGAITPVAKLEPVFVAGTTVSRATLHNEDEIEEKDIRIGDTVVVR-------KAG  387 (706)
T ss_pred             HHHCCCCCCCCCCEEEEEEEEEECCEEEECCEEEECCEEECCEEEEEEEECCHHHHHCCCCCCCCEEEEE-------ECC
T ss_conf             0102366743010089878998465677600367565587207862344016002420276658889998-------448


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE
Q ss_conf             28987159889999999976677755808785663167750349999408998812765548862178899862778267
Q gi|254780788|r  196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID  275 (526)
Q Consensus       196 pqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkID  275 (526)
T Consensus       388 d-V-----------------IP~v----v~v~~~~R-~~~~~~~~~P~~CP------~C----~--------------s~  420 (706)
T TIGR00575       388 D-V-----------------IPKV----VEVLLEKR-TGEERPIKFPTHCP------SC----G--------------SP  420 (706)
T ss_pred             C-C-----------------CHHH----HHCCCCCC-CCCCCEEECCCCCC------CC----C--------------CE
T ss_conf             6-2-----------------5355----41023578-88887034287188------88----8--------------33


Q ss_pred             EEECCCCHHHHHHH-HCCCCCCCEEEE-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEE-----EEEECC--C
Q ss_conf             99559878999997-628665424898-75678799998534221102544278999998616745-----785522--0
Q gi|254780788|r  276 IVVWSPDSATFVIN-ALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI-----DIITEE--E  346 (526)
Q Consensus       276 ii~ws~d~~~fi~n-Al~PA~v~~v~~-de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~i-----di~~~~--~  346 (526)
T Consensus       421 lv~~~~e~~~rC~Ng~~Cpa~~~e~i~hFaSr~AmdI-------------~GLG~~~I~~LfE~~Lv~~~~DLY~L~~k~  487 (706)
T TIGR00575       421 LVRIEEEVDIRCTNGLNCPAQLVERIKHFASRNAMDI-------------DGLGEKVIEQLFEEKLVRSVADLYALKEKL  487 (706)
T ss_pred             EECCCCCEEEECCCCCCCHHHHHHHEEEEEEECCCCC-------------CCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             1115787216538876653676511023454110332-------------222389999998726667856665778899


Q ss_pred             HHHHHHCC-CC----------------CCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCHH-----------HH
Q ss_conf             01101001-22----------------10001112258---88467888877321114777505888-----------87
Q gi|254780788|r  347 DSINRQKD-FN----------------ERTQFFMQAIN---VDEIIAHLLVAEGFADVEELACVKIS-----------EI  395 (526)
Q Consensus       347 ~~~~~~~e-~~----------------~~~~~f~e~Ld---VDE~iA~~LV~eGf~SiEeIa~a~~e-----------eL  395 (526)
T Consensus       488 ~~Ll~le~~~g~~sa~nLl~aIe~sK~~pl~RlL~aLGIr~VG~~~A~~La~~f~-tl~~L~~A~~e~~~~~~~f~~s~L  566 (706)
T TIGR00575       488 EDLLELEGKFGEKSAQNLLSAIEKSKKKPLARLLFALGIRHVGEVTAKLLAKHFG-TLDKLKAASLETLESIYQFDRSEL  566 (706)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CHHHHHHCCHHHHHHHHHHCCHHH
T ss_conf             9987064035568899999999985210489999862860357999999998558-868998508216778875160556


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HCCCCCCHHHHHHHHHCCCCCHH----------HHHH
Q ss_conf             765305889999999999999999999989877542843566-40779998999999987984788----------9653
Q gi|254780788|r  396 ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL-CSIPGIDSKIKVALGENGIKTME----------DLAG  464 (526)
Q Consensus       396 ~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L-~~l~gl~~~~~~~L~e~gIktle----------DlAe  464 (526)
T Consensus       567 ~~~~g~G~~vA~~~~~~---------------F~~---~~~~~~-qPYRta~~~~~L~~~gv~~~~~D~~~~LL~~~~~~  627 (706)
T TIGR00575       567 LSVEGVGPKVAESIVNF---------------FHD---PNNLSL-QPYRTAELIEKLEELGVNMESEDEFCRLLDQALKE  627 (706)
T ss_pred             HHCCCCHHHHHHHHHHH---------------HHC---CCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             41014027899999998---------------712---000135-60468999999988316310113578777642011


Q ss_pred             CCHHHHCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             26775212-31234443211245334358899999999998
Q gi|254780788|r  465 CSVDDLLG-WSENKGGNIEKFDGFLSSLGTPKDQVESMIIH  504 (526)
Q Consensus       465 ls~dEL~~-~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~  504 (526)
T Consensus       628 ~~~~~~~~~~---~~GK~fVlTG~L~~--~sR~~a~~~~~~  663 (706)
T TIGR00575       628 KVEAELAGSP---LAGKTFVLTGTLSQ--MSRDEAKELLEA  663 (706)
T ss_pred             HCCCCCCCCC---CCCCEEEEECCCCC--CCHHHHHHHHHH
T ss_conf             0010005752---02776899515688--888999999998