HHsearch alignment for GI: 254780788 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=96.24 E-value=0.06 Score=33.59 Aligned_cols=285 Identities=19% Similarity=0.271 Sum_probs=136.3
Q ss_pred HHHHHHHHHHCC-CEEEEEEEECCC-CEE-----E--EEECCC---EEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 877999985208-389999984057-638-----9--995793---5874478748875115276699999761135870
Q gi|254780788|r 128 DRQYLEFKDKVG-EIISGTVKRVEY-GNV-----I--VDLGNS---DGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 128 ~~i~~ef~~r~G-eiv~G~V~r~e~-~~i-----i--Vdlg~~---ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rg 195 (526)
T Consensus 315 WAiAYKFpa~e~~T~L~dv~~qVGRTG~iTPvA~LePV~vaG~~Vs~ATLHN~D~I~~kdiriGD~Vvv~-------kAG 387 (706)
T TIGR00575 315 WAIAYKFPAEEAQTKLLDVVVQVGRTGAITPVAKLEPVFVAGTTVSRATLHNEDEIEEKDIRIGDTVVVR-------KAG 387 (706)
T ss_pred HHHCCCCCCCCCCEEEEEEEEEECCEEEECCEEEECCEEECCEEEEEEEECCHHHHHCCCCCCCCEEEEE-------ECC
T ss_conf 0102366743010089878998465677600367565587207862344016002420276658889998-------448
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE
Q ss_conf 28987159889999999976677755808785663167750349999408998812765548862178899862778267
Q gi|254780788|r 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 (526)
Q Consensus 196 pqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkID 275 (526)
T Consensus 388 d-V-----------------IP~v----v~v~~~~R-~~~~~~~~~P~~CP------~C----~--------------s~ 420 (706)
T TIGR00575 388 D-V-----------------IPKV----VEVLLEKR-TGEERPIKFPTHCP------SC----G--------------SP 420 (706)
T ss_pred C-C-----------------CHHH----HHCCCCCC-CCCCCEEECCCCCC------CC----C--------------CE
T ss_conf 6-2-----------------5355----41023578-88887034287188------88----8--------------33
Q ss_pred EEECCCCHHHHHHH-HCCCCCCCEEEE-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEE-----EEEECC--C
Q ss_conf 99559878999997-628665424898-75678799998534221102544278999998616745-----785522--0
Q gi|254780788|r 276 IVVWSPDSATFVIN-ALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI-----DIITEE--E 346 (526)
Q Consensus 276 ii~ws~d~~~fi~n-Al~PA~v~~v~~-de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~i-----di~~~~--~ 346 (526)
T Consensus 421 lv~~~~e~~~rC~Ng~~Cpa~~~e~i~hFaSr~AmdI-------------~GLG~~~I~~LfE~~Lv~~~~DLY~L~~k~ 487 (706)
T TIGR00575 421 LVRIEEEVDIRCTNGLNCPAQLVERIKHFASRNAMDI-------------DGLGEKVIEQLFEEKLVRSVADLYALKEKL 487 (706)
T ss_pred EECCCCCEEEECCCCCCCHHHHHHHEEEEEEECCCCC-------------CCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 1115787216538876653676511023454110332-------------222389999998726667856665778899
Q ss_pred HHHHHHCC-CC----------------CCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCHH-----------HH
Q ss_conf 01101001-22----------------10001112258---88467888877321114777505888-----------87
Q gi|254780788|r 347 DSINRQKD-FN----------------ERTQFFMQAIN---VDEIIAHLLVAEGFADVEELACVKIS-----------EI 395 (526)
Q Consensus 347 ~~~~~~~e-~~----------------~~~~~f~e~Ld---VDE~iA~~LV~eGf~SiEeIa~a~~e-----------eL 395 (526)
T Consensus 488 ~~Ll~le~~~g~~sa~nLl~aIe~sK~~pl~RlL~aLGIr~VG~~~A~~La~~f~-tl~~L~~A~~e~~~~~~~f~~s~L 566 (706)
T TIGR00575 488 EDLLELEGKFGEKSAQNLLSAIEKSKKKPLARLLFALGIRHVGEVTAKLLAKHFG-TLDKLKAASLETLESIYQFDRSEL 566 (706)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CHHHHHHCCHHHHHHHHHHCCHHH
T ss_conf 9987064035568899999999985210489999862860357999999998558-868998508216778875160556
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HCCCCCCHHHHHHHHHCCCCCHH----------HHHH
Q ss_conf 765305889999999999999999999989877542843566-40779998999999987984788----------9653
Q gi|254780788|r 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL-CSIPGIDSKIKVALGENGIKTME----------DLAG 464 (526)
Q Consensus 396 ~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L-~~l~gl~~~~~~~L~e~gIktle----------DlAe 464 (526)
T Consensus 567 ~~~~g~G~~vA~~~~~~---------------F~~---~~~~~~-qPYRta~~~~~L~~~gv~~~~~D~~~~LL~~~~~~ 627 (706)
T TIGR00575 567 LSVEGVGPKVAESIVNF---------------FHD---PNNLSL-QPYRTAELIEKLEELGVNMESEDEFCRLLDQALKE 627 (706)
T ss_pred HHCCCCHHHHHHHHHHH---------------HHC---CCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 41014027899999998---------------712---000135-60468999999988316310113578777642011
Q ss_pred CCHHHHCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 26775212-31234443211245334358899999999998
Q gi|254780788|r 465 CSVDDLLG-WSENKGGNIEKFDGFLSSLGTPKDQVESMIIH 504 (526)
Q Consensus 465 ls~dEL~~-~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~ 504 (526)
T Consensus 628 ~~~~~~~~~~---~~GK~fVlTG~L~~--~sR~~a~~~~~~ 663 (706)
T TIGR00575 628 KVEAELAGSP---LAGKTFVLTGTLSQ--MSRDEAKELLEA 663 (706)
T ss_pred HCCCCCCCCC---CCCCEEEEECCCCC--CCHHHHHHHHHH
T ss_conf 0010005752---02776899515688--888999999998