HHsearch alignment for GI: 254780788 and conserved domain: TIGR00575

>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=95.79  E-value=0.076  Score=32.80  Aligned_cols=118  Identities=21%  Similarity=0.326  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHHHHHHH-HHHHHHHHCC--HHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             1225888467888877321-1147775058--888776530-58899999999999999999999898775428435664
Q gi|254780788|r  363 MQAINVDEIIAHLLVAEGF-ADVEELACVK--ISEIASIEG-FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC  438 (526)
Q Consensus       363 ~e~LdVDE~iA~~LV~eGf-~SiEeIa~a~--~eeL~~IeG-fdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~  438 (526)
T Consensus       455 mdI~GLG~~~I~~LfE~~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~---------aIe---~sK~~pl~RlL~  522 (706)
T TIGR00575       455 MDIDGLGEKVIEQLFEEKLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLS---------AIE---KSKKKPLARLLF  522 (706)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHH---HHHHHHHHHHHH
T ss_conf             33222238999999872666785666577889999870640355688999999---------999---852104899998


Q ss_pred             --CCCCCCHHHHHHHHHCCCCCHHHHHHCCHH-----------HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             --077999899999998798478896532677-----------5212312344432112453343588999999999984
Q gi|254780788|r  439 --SIPGIDSKIKVALGENGIKTMEDLAGCSVD-----------DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHA  505 (526)
Q Consensus       439 --~l~gl~~~~~~~L~e~gIktleDlAels~d-----------EL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~A  505 (526)
T Consensus       523 aLGIr~VG~~~A~~La~~f~-tl~~L~~A~~e~~~~~~~f~~s~L~~~~-----------------g~G~~vA~~~~~--  582 (706)
T TIGR00575       523 ALGIRHVGEVTAKLLAKHFG-TLDKLKAASLETLESIYQFDRSELLSVE-----------------GVGPKVAESIVN--  582 (706)
T ss_pred             HCCCHHHHHHHHHHHHHHCC-CHHHHHHCCHHHHHHHHHHCCHHHHHCC-----------------CCHHHHHHHHHH--
T ss_conf             62860357999999998558-8689985082167788751605564101-----------------402789999999--


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             122578880002
Q gi|254780788|r  506 RYKMGWIEKEKV  517 (526)
Q Consensus       506 R~~~gWf~~e~~  517 (526)
T Consensus       583 -----~F~~~~~  589 (706)
T TIGR00575       583 -----FFHDPNN  589 (706)
T ss_pred             -----HHHCCCC
T ss_conf             -----8712000