HHsearch alignment for GI: 254780788 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=95.79 E-value=0.076 Score=32.80 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=89.4
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHHHHCC--HHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 1225888467888877321-1147775058--888776530-58899999999999999999999898775428435664
Q gi|254780788|r 363 MQAINVDEIIAHLLVAEGF-ADVEELACVK--ISEIASIEG-FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC 438 (526)
Q Consensus 363 ~e~LdVDE~iA~~LV~eGf-~SiEeIa~a~--~eeL~~IeG-fdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~ 438 (526)
T Consensus 455 mdI~GLG~~~I~~LfE~~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~---------aIe---~sK~~pl~RlL~ 522 (706)
T TIGR00575 455 MDIDGLGEKVIEQLFEEKLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLS---------AIE---KSKKKPLARLLF 522 (706)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHH---HHHHHHHHHHHH
T ss_conf 33222238999999872666785666577889999870640355688999999---------999---852104899998
Q ss_pred --CCCCCCHHHHHHHHHCCCCCHHHHHHCCHH-----------HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --077999899999998798478896532677-----------5212312344432112453343588999999999984
Q gi|254780788|r 439 --SIPGIDSKIKVALGENGIKTMEDLAGCSVD-----------DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHA 505 (526)
Q Consensus 439 --~l~gl~~~~~~~L~e~gIktleDlAels~d-----------EL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~A 505 (526)
T Consensus 523 aLGIr~VG~~~A~~La~~f~-tl~~L~~A~~e~~~~~~~f~~s~L~~~~-----------------g~G~~vA~~~~~-- 582 (706)
T TIGR00575 523 ALGIRHVGEVTAKLLAKHFG-TLDKLKAASLETLESIYQFDRSELLSVE-----------------GVGPKVAESIVN-- 582 (706)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CHHHHHHCCHHHHHHHHHHCCHHHHHCC-----------------CCHHHHHHHHHH--
T ss_conf 62860357999999998558-8689985082167788751605564101-----------------402789999999--
Q ss_pred CCCCCCCCCCCC
Q ss_conf 122578880002
Q gi|254780788|r 506 RYKMGWIEKEKV 517 (526)
Q Consensus 506 R~~~gWf~~e~~ 517 (526)
T Consensus 583 -----~F~~~~~ 589 (706)
T TIGR00575 583 -----FFHDPNN 589 (706)
T ss_pred -----HHHCCCC
T ss_conf -----8712000