HHsearch alignment for GI: 254780788 and conserved domain: TIGR02063
>TIGR02063 RNase_R ribonuclease R; InterPro: IPR011805 This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in Escherichia coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Not included in this entry are shorter, divergent forms from the Chlamydiae and the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans , .; GO: 0003723 RNA binding, 0004518 nuclease activity.
Probab=95.89 E-value=0.087 Score=32.37 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEC--CCEEEEEHH------------
Q ss_conf 62079999999999--99999999887799998520838999998405763899957--935874478------------
Q gi|254780788|r 105 DFGRVAVQSAKQVI--IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG--NSDGVIRRD------------ 168 (526)
Q Consensus 105 ~fgRiaAq~AKQvI--~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg--~~ea~Lp~~------------ 168 (526)
T Consensus 637 ~l~~~~~h~S~~ERrA~~AERd~~d~kkaeyM~~~iG~~f~G~Is~VT~FG~FVeL~~~~ieGLVhI~~L~dDYY~Fd~~ 716 (755)
T TIGR02063 637 KLEEIAEHSSKTERRADEAERDVNDWKKAEYMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEK 716 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCC
T ss_conf 89999986112112155312779999999999850796887799756620138973674111026327898856307522
Q ss_pred -HCCCCC----CCCCCCEEEEEEEEECCCCCEEE
Q ss_conf -748875----11527669999976113587028
Q gi|254780788|r 169 -ETISRE----NLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 169 -e~ip~E----~~~~Gdrika~i~~V~~~~rgpq 197 (526)
T Consensus 717 ~~~L~G~R~gk~frLGD~v~V~V~~ad~~~~~id 750 (755)
T TIGR02063 717 GLALVGERTGKVFRLGDRVKVRVVKADLDTGKID 750 (755)
T ss_pred CCEEEEECCCCEEECCCEEEEEEEEECCCCCEEE
T ss_conf 0788643268737248748999999610336698