HHsearch alignment for GI: 254780788 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.69 E-value=4.3e-05 Score=56.71 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=53.6
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 664077999899999998798478896532677521231234443211245334358899999999998412257
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~~g 510 (526)
T Consensus 1 ~ledLPGVGp~TA~KL~EaGy~t~~~iA~A~~~EL~~~~-----------------gI~E~~A~kiI~AAR~a~~ 58 (333)
T TIGR02236 1 DLEDLPGVGPATAEKLREAGYDTLEAIAVASPKELSEIA-----------------GIGEGTAAKIIQAARKAAD 58 (333)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC-----------------CCCHHHHHHHHHHHHHHHC
T ss_conf 966578975768899886107889998445857953203-----------------7877789999999999846