HHsearch alignment for GI: 254780788 and conserved domain: TIGR03319
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.38 E-value=0.92 Score=24.86 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=84.1
Q ss_pred EEEEECCCC-CCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-H
Q ss_conf 999985342-21102544278999998616745785522001101001221000111225888467888877321114-7
Q gi|254780788|r 308 IEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV-E 385 (526)
Q Consensus 308 ~~v~v~~~q-ls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~Si-E 385 (526)
T Consensus 206 svV~LPsdemKGRIIGrEGRNIRa~E~~TGVDlIIDDtPe~----------------------------V~lS~FdpvRR 257 (514)
T TIGR03319 206 SVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDDTPEA----------------------------VILSGFDPVRR 257 (514)
T ss_pred EEEECCCHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCCE----------------------------EEEECCCHHHH
T ss_conf 66863977875501086752399999986974898599985----------------------------88867886889
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCC-------
Q ss_conf 7750588887765305889999999999999999999989877542843566407799989999999879847-------
Q gi|254780788|r 386 ELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT------- 458 (526)
Q Consensus 386 eIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIkt------- 458 (526)
T Consensus 258 EiAr~aLe~Li~DGRIhP~rIEe~v~k~~~e~~~~i~~~Ge~a~------~elgi~~~~peli~~lGrlkyRtSygQNvL 331 (514)
T TIGR03319 258 EIARMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAA------FDLGVHGLHPELIKLLGRLKFRTSYGQNVL 331 (514)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCCCCHHHHHHHHHEEHHHHCCHHHH
T ss_conf 99999999998749948899999999999999999999999999------981999999789999875000102405899
Q ss_pred -----HHHHHHCCHHHH
Q ss_conf -----889653267752
Q gi|254780788|r 459 -----MEDLAGCSVDDL 470 (526)
Q Consensus 459 -----leDlAels~dEL 470 (526)
T Consensus 332 ~Hs~Eva~lag~~A~El 348 (514)
T TIGR03319 332 QHSIEVAHLAGIMAAEL 348 (514)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999983