HHsearch alignment for GI: 254780788 and conserved domain: TIGR03319

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.38  E-value=0.92  Score=24.86  Aligned_cols=129  Identities=22%  Similarity=0.302  Sum_probs=84.1

Q ss_pred             EEEEECCCC-CCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-H
Q ss_conf             999985342-21102544278999998616745785522001101001221000111225888467888877321114-7
Q gi|254780788|r  308 IEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV-E  385 (526)
Q Consensus       308 ~~v~v~~~q-ls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~Si-E  385 (526)
T Consensus       206 svV~LPsdemKGRIIGrEGRNIRa~E~~TGVDlIIDDtPe~----------------------------V~lS~FdpvRR  257 (514)
T TIGR03319       206 SVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDDTPEA----------------------------VILSGFDPVRR  257 (514)
T ss_pred             EEEECCCHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCCE----------------------------EEEECCCHHHH
T ss_conf             66863977875501086752399999986974898599985----------------------------88867886889


Q ss_pred             HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCC-------
Q ss_conf             7750588887765305889999999999999999999989877542843566407799989999999879847-------
Q gi|254780788|r  386 ELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT-------  458 (526)
Q Consensus       386 eIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIkt-------  458 (526)
T Consensus       258 EiAr~aLe~Li~DGRIhP~rIEe~v~k~~~e~~~~i~~~Ge~a~------~elgi~~~~peli~~lGrlkyRtSygQNvL  331 (514)
T TIGR03319       258 EIARMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAA------FDLGVHGLHPELIKLLGRLKFRTSYGQNVL  331 (514)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCCCCHHHHHHHHHEEHHHHCCHHHH
T ss_conf             99999999998749948899999999999999999999999999------981999999789999875000102405899


Q ss_pred             -----HHHHHHCCHHHH
Q ss_conf             -----889653267752
Q gi|254780788|r  459 -----MEDLAGCSVDDL  470 (526)
Q Consensus       459 -----leDlAels~dEL  470 (526)
T Consensus       332 ~Hs~Eva~lag~~A~El  348 (514)
T TIGR03319       332 QHSIEVAHLAGIMAAEL  348 (514)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999983