HHsearch alignment for GI: 254780788 and conserved domain: TIGR03491
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=91.69 E-value=0.31 Score=28.29 Aligned_cols=31 Identities=42% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCC
Q ss_conf 6640779998999999987984788965326
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels 466 (526)
T Consensus 208 ~LslVagi~~~q~~~L~~~GI~Ti~~LA~~~ 238 (457)
T TIGR03491 208 HLSLVPGIGPSRYRLLQELGIHTLEDLAAAD 238 (457)
T ss_pred CHHHHCCCCHHHHHHHHHCCCCCHHHHHCCC
T ss_conf 9766059999999999985998799986299