HHsearch alignment for GI: 254780788 and conserved domain: cd05694
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.02 E-value=0.0041 Score=42.13 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=55.3
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC--CCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 20838999998405763899957--93587447874887511527669999976113587028987
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG--NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLL 200 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg--~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~l 200 (526)
T Consensus 3 ~~g~~l~a~V~SvEDHGyild~Gi~~~~gFl~~k~~~~~~~l~~G~v~~c~V~~v~~~g~vv~ls~ 68 (74)
T cd05694 3 VEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFSKLKVGQLLLCVVEKVKDDGRVVSLSA 68 (74)
T ss_pred CCCCEEEEEEEEEECCEEEEECCCCCCEEEEEHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEC
T ss_conf 678299999856714418998477772667301334755633488789999999928960999966