HHsearch alignment for GI: 254780788 and conserved domain: cd05702
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=94.14 E-value=0.29 Score=28.59 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=48.0
Q ss_pred CCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHC--------CCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 838999998405763899957-93587447874--------88751152766999997611358
Q gi|254780788|r 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET--------ISRENLRPGDRVKSYIYDVRREQ 193 (526)
Q Consensus 139 Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~--------ip~E~~~~Gdrika~i~~V~~~~ 193 (526)
T Consensus 1 G~vv~g~V~sik~~~l~V~L~d~~~GrVhiSei~D~~~~~k~P~~~~k~Gq~V~~rViG~~d~k 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEEECCC
T ss_conf 9779999999946708999689957789845521355555694685689999999999765462