HHsearch alignment for GI: 254780788 and conserved domain: pfam00575

>pfam00575 S1 S1 RNA binding domain. The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.

Probab=98.38  E-value=1.9e-06  Score=66.66  Aligned_cols=65  Identities=35%  Similarity=0.590  Sum_probs=60.0

Q ss_pred             HHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf             520838999998405763899957-935874478748------8751152766999997611358702898715
Q gi|254780788|r  136 DKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR  202 (526)
Q Consensus       136 ~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSR  202 (526)
T Consensus         2 ~~~G~iv~G~V~~i~~~G~fV~l~~~~~g~v~~s~ls~~~~~~~~~~~~~G~~v~~~V~~vd~~~~--~i~lS~   73 (74)
T pfam00575         2 PEEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVDKERG--RIILSI   73 (74)
T ss_pred             CCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHHHCCCCEEEEEEEEEECCCC--EEEEEE
T ss_conf             889999999999998775999978997999984461365556776830599999999999999999--999983