HHsearch alignment for GI: 254780788 and conserved domain: pfam10447
>pfam10447 EXOSC1 Exosome component EXOSC1/CSL4. This family of proteins are components of the exosome 3'-5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions.
Probab=93.83 E-value=0.35 Score=27.89 Aligned_cols=53 Identities=32% Similarity=0.595 Sum_probs=41.7
Q ss_pred HHCCCEEEEEEEECCCCEEEEEE---C------CCEEEEEHHHCCCCC--------CCCCCCEEEEEEEE
Q ss_conf 52083899999840576389995---7------935874478748875--------11527669999976
Q gi|254780788|r 136 DKVGEIISGTVKRVEYGNVIVDL---G------NSDGVIRRDETISRE--------NLRPGDRVKSYIYD 188 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~~iiVdl---g------~~ea~Lp~~e~ip~E--------~~~~Gdrika~i~~ 188 (526)
T Consensus 2 P~vGdiV~arVtrv~~~~a~~~Il~v~~~~l~~~f~G~IR~~DVRate~Dkv~~~~~FrPGDiVrA~ViS 71 (72)
T pfam10447 2 PKVGDIVLARVTRVTPRQAYCEILAVGGTALKETFKGIIRKQDVRATEKDRVKIYECFRPGDIVRAKVIS 71 (72)
T ss_pred CCCCCEEEEEEEEECHHEEEEEEEEECCEECCCCEEEEEEHHHCCCCCCCEEEHHHCCCCCCEEEEEEEE
T ss_conf 9899999999999750157999999999987885558989476665641018384683999899999962