HHsearch alignment for GI: 254780788 and conserved domain: smart00322
>smart00322 KH K homology RNA-binding domain.
Probab=95.39 E-value=0.017 Score=37.68 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=36.6
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf 78799998534221102544278999998616745785522
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
T Consensus 2 ~~~~~i~vp~~~~g~iIG~~G~~i~~i~~~~~~~I~i~~~~ 42 (69)
T smart00322 2 PVTIEVLIPADKVGLIIGKGGSTIKKIEEETGVKIDIPEDG 42 (69)
T ss_pred CEEEEEEECHHHCCEEECCCCCCHHHHHHHHCCEEEECCCC
T ss_conf 87999998978768549999845799999728889977999