HHsearch results for GI: 254780788 and protein with PDBid: 1coo_A

>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12} SCOP: a.60.3.1 PDB: 2jzb_A

Probab=94.00  E-value=0.061  Score=31.91  Aligned_cols=61  Identities=15%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             0122100011122588846788887732111477750588887765305889999999999
Q gi|254780788|r  353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA  413 (526)
Q Consensus       353 ~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA  413 (526)
                      .++......-++.|+++--....|..+|+.|+.++...+.++|..+.+|......+|+++-
T Consensus        16 ~~~~~~L~~~I~eL~LSvRs~N~L~~~gI~tvgdLv~~se~dLl~~~n~G~KSl~EIk~~L   76 (98)
T 1coo_A           16 PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL   76 (98)
T ss_dssp             --CCHHHHSBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             3452886096988277899999873817938999985799999758897687899999999