HHsearch results for GI: 254780788 and protein with PDBid: 1wcn_A
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=99.64 E-value=1.8e-16 Score=138.78 Aligned_cols=67 Identities=28% Similarity=0.543 Sum_probs=62.9
Q ss_pred HCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-C
Q ss_conf 428435664077999899999998798478896532677521231234443211245334358899999999998412-2
Q gi|254780788|r 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY-K 508 (526)
Q Consensus 430 e~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~-~ 508 (526)
+..|+++|++++||++.|+.+|++|||+|++|||+||+|||+++. ++++++|++|||+||+ |
T Consensus 2 d~~p~ddL~~leG~~~~~~~~L~e~gI~t~edLAdls~dEL~ei~-----------------~i~ee~A~~lIM~AR~~~ 64 (70)
T 1wcn_A 2 DNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE-----------------GLTDEKAGALIMAARNIC 64 (70)
T ss_dssp TTCCCHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSS-----------------SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHC-----------------CCCHHHHHHHHHHHHHCC
T ss_conf 876389997178989999999999699749999872899998761-----------------689999999999998665
Q ss_pred CCCCCCC
Q ss_conf 5788800
Q gi|254780788|r 509 MGWIEKE 515 (526)
Q Consensus 509 ~gWf~~e 515 (526)
||++|
T Consensus 65 --Wf~ee 69 (70)
T 1wcn_A 65 --WFGDE 69 (70)
T ss_dssp --TTCTT
T ss_pred --CCCCC
T ss_conf --76657