HHsearch results for GI: 254780788 and protein with PDBid: 2b8k_G
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 2bbm_B 2bbn_B
Probab=96.96 E-value=0.0021 Score=42.61 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=62.7
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCC-----------------CCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 9985208389999984057638999579358744787488-----------------75115276699999761135870
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS-----------------RENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip-----------------~E~~~~Gdrika~i~~V~~~~rg 195 (526)
-|+..+|+++.|+|..+.+-+++|.+|..++++|+. .+| +..|+.||.||+-|..|+.+.+.
T Consensus 78 v~~p~~Ge~~~g~V~~v~~~Gifv~lg~~~i~i~~~-~l~d~~~yd~~~~~~~~~~~~~~i~iGd~VrvrV~~v~~~~~~ 156 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKH-LMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTTSEEEEEGG-GSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTE
T ss_pred EEECCCCCEEEEEEEEECCCEEEEEECCCEEEEEHH-HCCCCCCCCCCCCEEEEECCCEEECCCCEEEEEEEEEEECCCC
T ss_conf 986678989999999853646999950868998745-5677630052115378833880991799999999998706673
Q ss_pred EEEEEECCCHHH
Q ss_conf 289871598899
Q gi|254780788|r 196 PQVLLSRTHPQF 207 (526)
Q Consensus 196 pqi~lSRt~p~~ 207 (526)
.+++.|-..|.|
T Consensus 157 i~~iGtl~~~~L 168 (215)
T 2b8k_G 157 IHAIGSIKEDYL 168 (215)
T ss_dssp EEEEEECCSTTC
T ss_pred CEEEEEECCCCC
T ss_conf 389999678986