HHsearch results for GI: 254780788 and protein with PDBid: 2ba0_A
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.39 E-value=0.008 Score=38.39 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=80.9
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHH-------CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 998520838999998405763899957-9358744787-------48875115276699999761135870289871598
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-------TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e-------~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~ 204 (526)
.|..++|++|.|.|.++..+.+.||++ ...|+||..+ .-|++.|++||-|.|-|..+... ..+.||-
T Consensus 52 rY~P~vGDiVIG~V~~i~~~~~~VdI~s~~~a~L~~~~~~~~~~~~~~~~~l~~GDlI~ArV~~v~~~---~~~~L~~-- 126 (229)
T 2ba0_A 52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK---MKVTLTM-- 126 (229)
T ss_dssp SCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT---CCEEEEC--
T ss_pred CCCCCCCCEEEEEEEEECCCEEEEEECCCCCEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEECCC---CCEEEEE--
T ss_conf 64688999999999787075599982897536977455766320125254257899999999996588---8569973--
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 89999999976677755808785663167750349999408998812765548862178899862778267995598789
Q gi|254780788|r 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 (526)
Q Consensus 205 p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~ 284 (526)
|+++.+. |
T Consensus 127 --------------------------~~~~~gk-------------------------------l--------------- 134 (229)
T 2ba0_A 127 --------------------------KDRICRP-------------------------------I--------------- 134 (229)
T ss_dssp --------------------------CSSSCEE-------------------------------E---------------
T ss_pred --------------------------CCCCCCC-------------------------------C---------------
T ss_conf --------------------------4656786-------------------------------5---------------
Q ss_pred HHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf 999976286654248987567879999853422110254427899999861674578
Q gi|254780788|r 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 (526)
Q Consensus 285 ~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi 341 (526)
..-+.+-|+.......||+++.-+.+..+-|+++|=+
T Consensus 135 --------------------~~G~l~~v~~~~v~rli~~~~~~l~~l~~~~~~ei~v 171 (229)
T 2ba0_A 135 --------------------RFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV 171 (229)
T ss_dssp --------------------SSSEEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE
T ss_pred --------------------CCEEEEEECCCCCCCEECCCCCHHHHHCCCCCEEEEE
T ss_conf --------------------7679999804446624516740645522366869999