HHsearch results for GI: 254780788 and protein with PDBid: 2ba0_A

>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.39  E-value=0.008  Score=38.39  Aligned_cols=112  Identities=19%  Similarity=0.291  Sum_probs=80.9

Q ss_pred             HHHHHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHH-------CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf             998520838999998405763899957-9358744787-------48875115276699999761135870289871598
Q gi|254780788|r  133 EFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-------TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH  204 (526)
Q Consensus       133 ef~~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e-------~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~  204 (526)
                      .|..++|++|.|.|.++..+.+.||++ ...|+||..+       .-|++.|++||-|.|-|..+...   ..+.||-  
T Consensus        52 rY~P~vGDiVIG~V~~i~~~~~~VdI~s~~~a~L~~~~~~~~~~~~~~~~~l~~GDlI~ArV~~v~~~---~~~~L~~--  126 (229)
T 2ba0_A           52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK---MKVTLTM--  126 (229)
T ss_dssp             SCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT---CCEEEEC--
T ss_pred             CCCCCCCCEEEEEEEEECCCEEEEEECCCCCEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEECCC---CCEEEEE--
T ss_conf             64688999999999787075599982897536977455766320125254257899999999996588---8569973--


Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf             89999999976677755808785663167750349999408998812765548862178899862778267995598789
Q gi|254780788|r  205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA  284 (526)
Q Consensus       205 p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~  284 (526)
                                                |+++.+.                               |               
T Consensus       127 --------------------------~~~~~gk-------------------------------l---------------  134 (229)
T 2ba0_A          127 --------------------------KDRICRP-------------------------------I---------------  134 (229)
T ss_dssp             --------------------------CSSSCEE-------------------------------E---------------
T ss_pred             --------------------------CCCCCCC-------------------------------C---------------
T ss_conf             --------------------------4656786-------------------------------5---------------


Q ss_pred             HHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf             999976286654248987567879999853422110254427899999861674578
Q gi|254780788|r  285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI  341 (526)
Q Consensus       285 ~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi  341 (526)
                                          ..-+.+-|+.......||+++.-+.+..+-|+++|=+
T Consensus       135 --------------------~~G~l~~v~~~~v~rli~~~~~~l~~l~~~~~~ei~v  171 (229)
T 2ba0_A          135 --------------------RFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV  171 (229)
T ss_dssp             --------------------SSSEEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE
T ss_pred             --------------------CCEEEEEECCCCCCCEECCCCCHHHHHCCCCCEEEEE
T ss_conf             --------------------7679999804446624516740645522366869999