HHsearch results for GI: 254780788 and protein with PDBid: 2khj_A

>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}

Probab=97.98  E-value=2.2e-05  Score=57.23  Aligned_cols=73  Identities=26%  Similarity=0.401  Sum_probs=61.1

Q ss_pred             HHHHHHHHH--CCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf             779999852--0838999998405763899957-935874478748------8751152766999997611358702898
Q gi|254780788|r  129 RQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVL  199 (526)
Q Consensus       129 ~i~~ef~~r--~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~  199 (526)
                      ..|++|.+.  +|++++|+|.+++...++|+|+ +.+|++|.++.-      |...|++|+.++|.|.+++...+  .|.
T Consensus        20 ~~f~~~~~~~k~G~iv~G~V~~I~~~Gv~V~l~~~i~G~i~~~els~~~~~~~~~~~~vG~~v~vkVi~id~~~~--~I~   97 (109)
T 2khj_A           20 HMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR--AIS   97 (109)
T ss_dssp             -CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTT--EEE
T ss_pred             CCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCCCEECCCCEEEEEEEEEECCCC--EEE
T ss_conf             728999864899999999999998977999979997899868992755312602076899999999999989999--999


Q ss_pred             EECC
Q ss_conf             7159
Q gi|254780788|r  200 LSRT  203 (526)
Q Consensus       200 lSRt  203 (526)
                      ||..
T Consensus        98 LS~K  101 (109)
T 2khj_A           98 LSVR  101 (109)
T ss_dssp             EETT
T ss_pred             EEEE
T ss_conf             9856