HHsearch results for GI: 254780788 and protein with PDBid: 2nn6_I

>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.15  E-value=0.0066  Score=39.02  Aligned_cols=71  Identities=21%  Similarity=0.340  Sum_probs=52.2

Q ss_pred             HHHHCCCEEEEEEEECCCCEEEEEEC---------CCEEEEEHHHCC--------CCCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf             98520838999998405763899957---------935874478748--------8751152766999997611358702
Q gi|254780788|r  134 FKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETI--------SRENLRPGDRVKSYIYDVRREQRGP  196 (526)
Q Consensus       134 f~~r~Geiv~G~V~r~e~~~iiVdlg---------~~ea~Lp~~e~i--------p~E~~~~Gdrika~i~~V~~~~rgp  196 (526)
                      |..++|++|.|.|.++....+.|++.         ...|+++..+.-        ..+.|++||-|+|-|..+...  .+
T Consensus        77 ~~P~vGDiViGrV~~v~~~~a~V~I~~v~~~~l~~~~~g~l~~~dvr~~e~d~~~m~d~fr~GDIVrAkVis~~d~--~~  154 (209)
T 2nn6_I           77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDA--QS  154 (209)
T ss_dssp             CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETT--TT
T ss_pred             CCCCCCCEEEEEEEEECCCEEEEEEEEECCEECCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEEECCCC--CC
T ss_conf             4798899999999998478799999998787257650123678884605452555875078998899999988688--66


Q ss_pred             EEEEECCCHH
Q ss_conf             8987159889
Q gi|254780788|r  197 QVLLSRTHPQ  206 (526)
Q Consensus       197 qi~lSRt~p~  206 (526)
                      .+.||-..++
T Consensus       155 ~~~LSt~~~~  164 (209)
T 2nn6_I          155 NYLLTTAENE  164 (209)
T ss_dssp             EEEEECCSSS
T ss_pred             CEEEEECCCC
T ss_conf             6899951898