HHsearch results for GI: 254780788 and protein with PDBid: 2nn6_I
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.15 E-value=0.0066 Score=39.02 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=52.2
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEEC---------CCEEEEEHHHCC--------CCCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 98520838999998405763899957---------935874478748--------8751152766999997611358702
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETI--------SRENLRPGDRVKSYIYDVRREQRGP 196 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg---------~~ea~Lp~~e~i--------p~E~~~~Gdrika~i~~V~~~~rgp 196 (526)
|..++|++|.|.|.++....+.|++. ...|+++..+.- ..+.|++||-|+|-|..+... .+
T Consensus 77 ~~P~vGDiViGrV~~v~~~~a~V~I~~v~~~~l~~~~~g~l~~~dvr~~e~d~~~m~d~fr~GDIVrAkVis~~d~--~~ 154 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDA--QS 154 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETT--TT
T ss_pred CCCCCCCEEEEEEEEECCCEEEEEEEEECCEECCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEEECCCC--CC
T ss_conf 4798899999999998478799999998787257650123678884605452555875078998899999988688--66
Q ss_pred EEEEECCCHH
Q ss_conf 8987159889
Q gi|254780788|r 197 QVLLSRTHPQ 206 (526)
Q Consensus 197 qi~lSRt~p~ 206 (526)
.+.||-..++
T Consensus 155 ~~~LSt~~~~ 164 (209)
T 2nn6_I 155 NYLLTTAENE 164 (209)
T ss_dssp EEEEECCSSS
T ss_pred CEEEEECCCC
T ss_conf 6899951898