HHsearch results for GI: 254780788 and protein with PDBid: 2waq_E
>2waq_E DNA-directed RNA polymerase RPO7 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_E 2pmz_E 3hkz_E
Probab=96.86 E-value=0.00044 Score=47.63 Aligned_cols=73 Identities=25% Similarity=0.510 Sum_probs=60.3
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC-----------------CCCCCCCEEEEEEEEECCCCCE-
Q ss_conf 9852083899999840576389995793587447874887-----------------5115276699999761135870-
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-----------------ENLRPGDRVKSYIYDVRREQRG- 195 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~-----------------E~~~~Gdrika~i~~V~~~~rg- 195 (526)
|+..+|+++.|+|..+..-.++|.+|..+++++.++..+. ..|+.||+||+-|..|+.+..+
T Consensus 77 f~P~~Gevi~g~V~~v~~~Gifv~ig~~~~~v~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 2waq_E 77 YVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp ECCCSSCCCCEEEEEECSSEEEEBCSSSBBCEESTTBCSSSSCCCCCSSSCSCBCSSSBCCTTCEEBCEEEEEECCC---
T ss_pred EECCCCCEEEEEEEEEEECEEEEEECCCCCEEEHHHHCCCCCCCCHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCCC
T ss_conf 81558979999999886021999954866608689937776527367465999406829989999999999985787766
Q ss_pred -EEEEEECCCHH
Q ss_conf -28987159889
Q gi|254780788|r 196 -PQVLLSRTHPQ 206 (526)
Q Consensus 196 -pqi~lSRt~p~ 206 (526)
..|.+|...|.
T Consensus 157 ~~~I~~s~~~~g 168 (180)
T 2waq_E 157 LPRIALTMRQPY 168 (180)
T ss_dssp CCEEEEEBCSTT
T ss_pred CCEEEEECCCCC
T ss_conf 660899857888