HHsearch results for GI: 254780788 and protein with PDBid: 3gfk_B

>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis}

Probab=94.72  E-value=0.045  Score=32.86  Aligned_cols=62  Identities=11%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             01221000111225888467888877321114777505888877653058899999999999
Q gi|254780788|r  353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR  414 (526)
Q Consensus       353 ~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~  414 (526)
                      .+........++.|+++--....|..+|+.|+.++...+.++|..+++|......|+++.-.
T Consensus         8 ~~~~~~L~~~I~~L~LS~R~~n~L~~~gI~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~   69 (79)
T 3gfk_B            8 DQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE   69 (79)
T ss_dssp             SSCCCGGGCBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             24678854959984798999999989289679999868899997578986737999999999