HHsearch results for GI: 254780788 and protein with PDBid: 3k4g_A

>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} PDB: 1lb2_B* 1xs9_D

Probab=94.25  E-value=0.1  Score=30.34  Aligned_cols=60  Identities=15%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             122100011122588846788887732111477750588887765305889999999999
Q gi|254780788|r  354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA  413 (526)
Q Consensus       354 e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA  413 (526)
                      ++......-++.|+++--....|..+|+.++.+++..+.++|..+.+|......+|+++-
T Consensus         5 e~~~~L~~~I~eL~LSvR~~N~Lk~~gI~tvgdLv~~se~dLl~i~NfG~kSl~EI~~~L   64 (86)
T 3k4g_A            5 EFDPILLRPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVL   64 (86)
T ss_dssp             CCCGGGGSBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHCCCHHHHCCCHHHHHHHCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             108887196987278899998725543937999984899998178898772699999999