Query gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 526
No_of_seqs 242 out of 1121
Neff 5.2
Searched_HMMs 23785
Date Tue May 31 15:28:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780788.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hh2_P NUSA, N utilization sub 100.0 0 0 919.6 26.1 342 6-347 2-344 (344)
2 1k0r_A NUSA; two component arr 100.0 0 0 873.2 8.3 337 4-364 19-365 (366)
3 2asb_A Transcription elongatio 100.0 0 0 671.4 22.2 237 132-368 1-246 (251)
4 2kwp_A Transcription elongatio 100.0 3.2E-33 1.3E-37 261.8 12.3 128 5-132 1-128 (129)
5 1wcn_A Transcription elongatio 99.6 1.8E-16 7.4E-21 138.8 6.4 67 430-515 2-69 (70)
6 2cxc_A NUSA; transcription ter 99.6 3.8E-16 1.6E-20 136.3 7.3 135 197-343 4-140 (144)
7 1u9l_A Transcription elongatio 99.5 1.7E-14 7.1E-19 124.2 4.0 66 357-422 3-68 (70)
8 1wi5_A RRP5 protein homolog; S 98.3 3.4E-06 1.4E-10 63.2 9.0 68 137-206 20-96 (119)
9 1pzn_A RAD51, DNA repair and r 98.3 6.9E-07 2.9E-11 68.3 4.8 57 361-417 36-92 (349)
10 1kl9_A Eukaryotic translation 98.1 1.8E-05 7.6E-10 57.9 8.8 70 135-206 12-92 (182)
11 2a19_A EIF-2- alpha, eukaryoti 98.1 1.8E-05 7.6E-10 57.8 8.5 67 136-204 13-88 (175)
12 2k4k_A GSP13, general stress p 98.0 2.7E-05 1.1E-09 56.6 8.6 64 137-202 6-76 (130)
13 2k52_A Uncharacterized protein 98.0 3.2E-05 1.3E-09 56.0 8.8 66 137-204 4-72 (80)
14 2khi_A 30S ribosomal protein S 98.0 2.9E-05 1.2E-09 56.3 8.4 74 128-203 18-101 (115)
15 1q8k_A Eukaryotic translation 98.0 6.4E-05 2.7E-09 53.8 10.1 69 136-206 11-90 (308)
16 2khj_A 30S ribosomal protein S 98.0 2.2E-05 9.2E-10 57.2 7.6 73 129-203 20-101 (109)
17 3aev_A Translation initiation 98.0 0.0001 4.2E-09 52.4 10.5 78 136-213 9-95 (275)
18 3cw2_C Translation initiation 97.7 2.2E-05 9.3E-10 57.2 4.2 66 136-203 9-83 (266)
19 2cqo_A Nucleolar protein of 40 97.7 0.00013 5.7E-09 51.4 7.8 67 137-203 21-95 (119)
20 2cxc_A NUSA; transcription ter 97.7 1.2E-05 5.1E-10 59.1 2.0 118 289-417 19-136 (144)
21 1b22_A DNA repair protein RAD5 97.6 3.1E-05 1.3E-09 56.1 3.1 52 366-417 31-82 (114)
22 3go5_A Multidomain protein wit 97.5 0.00057 2.4E-08 46.8 8.6 61 137-205 5-65 (285)
23 3go5_A Multidomain protein wit 97.4 0.001 4.3E-08 45.0 8.8 94 90-204 39-137 (285)
24 2z43_A DNA repair and recombin 97.4 2E-05 8.4E-10 57.5 0.0 54 364-417 16-69 (324)
25 1pzn_A RAD51, DNA repair and r 97.4 0.00033 1.4E-08 48.6 6.2 91 393-511 4-94 (349)
26 1dgs_A DNA ligase; AMP complex 97.4 0.00094 3.9E-08 45.2 8.5 110 363-502 444-556 (667)
27 2eqs_A ATP-dependent RNA helic 97.3 0.00092 3.9E-08 45.3 7.6 63 137-203 11-84 (103)
28 1go3_E DNA-directed RNA polyme 97.3 0.00069 2.9E-08 46.2 6.7 74 133-206 76-169 (187)
29 1y14_B B16, RPB7, DNA-directed 97.3 0.00087 3.7E-08 45.5 7.2 75 132-206 77-167 (171)
30 2z0s_A Probable exosome comple 97.2 0.012 4.9E-07 37.2 12.3 114 131-341 59-183 (235)
31 2i1q_A DNA repair and recombin 97.2 0.00058 2.4E-08 46.8 5.4 52 366-417 9-60 (322)
32 1wcn_A Transcription elongatio 97.1 0.00053 2.2E-08 47.0 5.2 55 361-415 8-62 (70)
33 2c35_B Human RPB7, DNA-directe 97.1 0.0014 6E-08 43.9 6.8 75 132-206 75-167 (172)
34 2b8k_G B16, DNA-directed RNA p 97.0 0.0021 9E-08 42.6 6.8 74 133-207 78-168 (215)
35 2zj8_A DNA helicase, putative 96.9 0.001 4.4E-08 44.9 4.7 65 436-517 647-711 (720)
36 2waq_E DNA-directed RNA polyme 96.9 0.00044 1.9E-08 47.6 2.7 73 134-206 77-168 (180)
37 2owo_A DNA ligase; protein/DNA 96.9 0.012 4.9E-07 37.2 9.9 99 363-474 449-550 (671)
38 2je6_I RRP4, exosome complex R 96.8 0.0026 1.1E-07 41.9 6.5 70 133-205 69-148 (251)
39 3bzc_A TEX; helix-turn-helix, 96.8 0.00069 2.9E-08 46.2 3.5 197 229-452 332-555 (785)
40 2jvz_A KH type-splicing, FAR u 96.6 0.0015 6.2E-08 43.8 3.9 95 249-344 11-129 (164)
41 3lda_A DNA repair protein RAD5 96.6 0.0039 1.7E-07 40.7 6.0 53 364-416 87-139 (400)
42 2anr_A Neuro-oncological ventr 96.6 0.0014 6E-08 43.9 3.5 96 249-345 15-143 (178)
43 2zj8_A DNA helicase, putative 96.4 0.058 2.4E-06 32.1 12.0 56 362-417 648-703 (720)
44 2ba0_A Archeal exosome RNA bin 96.4 0.008 3.4E-07 38.4 6.5 112 133-341 52-171 (229)
45 1u9l_A Transcription elongatio 96.3 0.0065 2.8E-07 39.0 5.6 55 437-508 8-62 (70)
46 3h0g_G DNA-directed RNA polyme 96.3 0.002 8.6E-08 42.8 3.0 74 134-207 80-169 (172)
47 3lda_A DNA repair protein RAD5 96.2 0.01 4.2E-07 37.7 6.3 58 433-508 82-139 (400)
48 2jzx_A Poly(RC)-binding protei 96.2 0.0024 1E-07 42.2 3.0 94 249-344 14-127 (160)
49 2i1q_A DNA repair and recombin 96.2 0.0082 3.4E-07 38.3 5.7 37 436-472 4-40 (322)
50 2nn6_I 3'-5' exoribonuclease C 96.1 0.0066 2.8E-07 39.0 5.0 71 134-206 77-164 (209)
51 2nn6_G Exosome complex exonucl 96.1 0.02 8.6E-07 35.4 7.4 81 132-213 121-226 (289)
52 1j4w_A FUSE binding protein; s 96.1 0.0058 2.4E-07 39.4 4.4 96 249-345 12-143 (174)
53 2ja9_A Exosome complex exonucl 96.1 0.031 1.3E-06 34.0 8.1 60 133-192 2-68 (175)
54 2bx2_L Ribonuclease E, RNAse E 96.0 0.032 1.4E-06 34.0 8.0 143 136-283 43-242 (517)
55 3m7n_A Putative uncharacterize 96.0 0.0053 2.2E-07 39.7 3.9 65 135-206 54-135 (179)
56 1b22_A DNA repair protein RAD5 95.9 0.0027 1.1E-07 41.9 2.2 55 439-510 29-83 (114)
57 1vq8_Y 50S ribosomal protein L 95.7 0.0014 5.8E-08 44.0 0.0 58 357-414 12-69 (241)
58 2z43_A DNA repair and recombin 95.7 0.0015 6.4E-08 43.7 0.0 37 436-472 13-49 (324)
59 3krm_A Insulin-like growth fac 95.6 0.004 1.7E-07 40.6 1.9 96 248-344 11-123 (163)
60 2qnd_A FMR1 protein; KH domain 95.5 0.00029 1.2E-08 49.0 -4.1 87 249-347 13-109 (144)
61 1z00_A DNA excision repair pro 95.2 0.018 7.4E-07 35.9 4.2 54 357-411 16-69 (89)
62 2va8_A SSO2462, SKI2-type heli 95.2 0.18 7.5E-06 28.5 11.1 53 436-508 658-710 (715)
63 1kft_A UVRC, excinuclease ABC 94.9 0.023 9.7E-07 35.0 4.1 51 361-412 25-75 (78)
64 3af5_A Putative uncharacterize 94.9 0.21 8.9E-06 28.0 9.2 35 179-213 246-293 (651)
65 2ckz_B C25, DNA-directed RNA p 94.8 0.038 1.6E-06 33.4 5.0 61 133-193 76-157 (218)
66 3gfk_B DNA-directed RNA polyme 94.7 0.045 1.9E-06 32.9 5.2 62 353-414 8-69 (79)
67 1x2i_A HEF helicase/nuclease; 94.7 0.04 1.7E-06 33.3 4.8 49 362-411 16-64 (75)
68 2fmp_A DNA polymerase beta; nu 94.6 0.19 8.1E-06 28.3 8.1 36 307-342 254-296 (335)
69 2e3u_A PH-DIM2P, hypothetical 94.5 0.011 4.6E-07 37.4 1.6 94 248-342 42-165 (219)
70 2rf4_A DNA-directed RNA polyme 94.5 0.11 4.5E-06 30.1 6.6 69 133-201 124-211 (214)
71 2a1j_B DNA excision repair pro 94.4 0.03 1.2E-06 34.2 3.6 50 362-412 34-83 (91)
72 1z3e_B DNA-directed RNA polyme 94.3 0.07 3E-06 31.5 5.3 58 357-414 5-62 (73)
73 2w9m_A Polymerase X; SAXS, DNA 94.3 0.064 2.7E-06 31.8 5.1 33 3-35 7-41 (578)
74 3k4g_A DNA-directed RNA polyme 94.3 0.1 4.2E-06 30.3 6.1 60 354-413 5-64 (86)
75 2id0_A Exoribonuclease 2; RNAs 94.2 0.3 1.3E-05 26.9 12.4 101 90-220 53-174 (644)
76 1tua_A Hypothetical protein AP 94.1 0.0033 1.4E-07 41.2 -1.7 94 248-342 12-134 (191)
77 2nn6_H Exosome complex exonucl 94.0 0.034 1.4E-06 33.8 3.3 71 133-206 90-177 (308)
78 1coo_A RNA polymerase alpha su 94.0 0.061 2.6E-06 31.9 4.6 61 353-413 16-76 (98)
79 1jms_A Terminal deoxynucleotid 93.7 0.1 4.4E-06 30.2 5.3 69 392-464 79-150 (381)
80 2ihm_A POL MU, DNA polymerase 93.4 0.13 5.6E-06 29.4 5.4 39 306-344 281-327 (360)
81 2bgw_A XPF endonuclease; hydro 93.1 0.13 5.5E-06 29.5 5.0 49 362-411 164-212 (219)
82 1dtj_A RNA-binding neurooncolo 92.9 0.08 3.4E-06 31.0 3.7 40 307-346 4-43 (76)
83 2a1j_A DNA repair endonuclease 92.9 0.14 5.7E-06 29.3 4.9 49 361-411 5-53 (63)
84 1vq8_Y 50S ribosomal protein L 92.9 0.016 6.5E-07 36.3 0.0 24 381-404 101-124 (241)
85 1v5w_A DMC1, meiotic recombina 92.7 0.017 7.2E-07 36.0 0.0 54 364-417 31-84 (343)
86 1zzk_A Heterogeneous nuclear r 92.5 0.16 6.8E-06 28.8 4.9 36 307-342 8-43 (82)
87 2bcq_A DNA polymerase lambda; 92.4 0.16 6.6E-06 28.9 4.7 39 306-344 247-292 (335)
88 2p2r_A Poly(RC)-binding protei 92.4 0.078 3.3E-06 31.1 3.1 39 305-343 4-42 (76)
89 2va8_A SSO2462, SKI2-type heli 92.4 0.23 9.5E-06 27.7 5.4 12 315-326 381-392 (715)
90 2opv_A KHSRP protein; KH domai 92.3 0.12 4.8E-06 29.9 3.9 43 304-346 12-54 (85)
91 1z00_B DNA repair endonuclease 92.1 0.23 9.7E-06 27.7 5.2 51 359-411 17-67 (84)
92 1wvn_A Poly(RC)-binding protei 91.8 0.14 5.9E-06 29.2 3.9 41 304-344 4-44 (82)
93 3cdi_A Polynucleotide phosphor 91.4 0.03 1.2E-06 34.2 0.0 60 283-342 521-596 (723)
94 1ec6_A RNA-binding protein NOV 91.2 0.14 6E-06 29.2 3.4 40 306-345 3-42 (87)
95 1pu6_A 3-methyladenine DNA gly 91.1 0.74 3.1E-05 23.9 6.9 75 379-455 64-141 (218)
96 1x4m_A FAR upstream element bi 90.9 0.13 5.6E-06 29.4 3.0 41 305-345 14-54 (94)
97 2xr1_A Cleavage and polyadenyl 90.8 0.32 1.3E-05 26.6 4.8 155 40-213 85-281 (640)
98 2hh2_A KH-type splicing regula 90.8 0.21 8.8E-06 28.0 3.9 39 307-345 8-46 (107)
99 2vnu_D Exosome complex exonucl 90.6 0.82 3.5E-05 23.6 10.5 13 91-103 69-81 (760)
100 2hh3_A KH-type splicing regula 90.5 0.18 7.5E-06 28.5 3.3 38 306-343 11-48 (106)
101 2qnd_A FMR1 protein; KH domain 89.9 0.24 1E-05 27.5 3.6 80 306-388 4-93 (144)
102 2axy_A Poly(RC)-binding protei 89.8 0.2 8.5E-06 28.1 3.1 38 305-342 4-41 (73)
103 3c1y_A DNA integrity scanning 89.6 0.33 1.4E-05 26.5 4.1 248 195-502 76-364 (377)
104 1we8_A Tudor and KH domain con 89.5 0.27 1.2E-05 27.1 3.6 39 306-344 15-53 (104)
105 2edu_A Kinesin-like protein KI 89.3 0.66 2.8E-05 24.3 5.4 64 384-459 31-94 (98)
106 3krm_A Insulin-like growth fac 89.0 0.33 1.4E-05 26.6 3.7 40 305-344 2-41 (163)
107 1j5k_A Heterogeneous nuclear r 88.5 0.29 1.2E-05 27.0 3.1 38 306-343 14-51 (89)
108 1j4w_A FUSE binding protein; s 87.6 0.32 1.4E-05 26.6 3.0 40 306-345 3-42 (174)
109 1x4n_A FAR upstream element bi 87.5 0.32 1.3E-05 26.6 2.9 39 306-344 15-53 (92)
110 1e3p_A Guanosine pentaphosphat 87.5 0.034 1.4E-06 33.8 -2.1 36 307-342 599-634 (757)
111 2anr_A Neuro-oncological ventr 87.3 0.37 1.5E-05 26.2 3.1 41 304-344 4-44 (178)
112 2ctl_A Vigilin; K homology typ 87.2 0.32 1.4E-05 26.6 2.7 39 306-344 17-55 (97)
113 2jzx_A Poly(RC)-binding protei 87.1 0.39 1.7E-05 26.0 3.1 38 306-343 5-42 (160)
114 1vig_A Vigilin; RNA-binding pr 86.6 0.4 1.7E-05 25.9 3.0 38 306-343 5-42 (71)
115 2q0z_X Protein Pro2281; SEC63, 86.3 1.5 6.4E-05 21.6 6.1 56 434-506 160-215 (339)
116 1tua_A Hypothetical protein AP 85.8 0.52 2.2E-05 25.1 3.2 40 305-344 3-42 (191)
117 2duy_A Competence protein come 85.7 0.88 3.7E-05 23.4 4.3 51 386-452 20-70 (75)
118 2wp8_J Exosome complex exonucl 85.7 1.6 6.9E-05 21.4 9.6 10 138-147 246-255 (977)
119 3bqs_A Uncharacterized protein 85.6 0.67 2.8E-05 24.3 3.7 38 435-472 4-41 (93)
120 3i2z_B RNA chaperone, negative 85.3 1.7 7.2E-05 21.3 5.7 55 141-198 5-65 (71)
121 3im1_A Protein SNU246, PRE-mRN 84.6 1.8 7.7E-05 21.1 6.1 56 434-506 156-211 (328)
122 2cpq_A FragIle X mental retard 84.1 0.47 2E-05 25.4 2.4 39 306-344 15-53 (91)
123 3bz1_U Photosystem II 12 kDa e 82.7 1 4.2E-05 23.0 3.6 54 385-454 25-78 (104)
124 1s5l_U Photosystem II 12 kDa e 82.6 1.3 5.4E-05 22.2 4.1 53 386-454 56-108 (134)
125 2ctm_A Vigilin; K homology typ 81.9 0.72 3E-05 24.0 2.6 51 293-343 3-54 (95)
126 3cam_A Cold-shock domain famil 81.1 2.1 9E-05 20.6 4.8 55 141-198 1-61 (67)
127 1jx4_A DNA polymerase IV (fami 81.1 1.6 6.8E-05 21.5 4.1 90 317-414 140-230 (352)
128 2nrt_A Uvrabc system protein C 81.0 2.3 9.5E-05 20.4 4.9 64 406-473 142-205 (220)
129 2a6h_A DNA-directed RNA polyme 80.7 0.26 1.1E-05 27.3 0.0 55 358-412 251-305 (315)
130 2dgr_A Ring finger and KH doma 80.7 0.51 2.2E-05 25.1 1.5 39 305-343 9-47 (83)
131 3lu0_A DNA-directed RNA polyme 78.5 0.34 1.4E-05 26.4 0.0 61 356-416 250-310 (329)
132 2ctk_A Vigilin; K homology typ 78.4 0.96 4E-05 23.1 2.3 36 307-342 18-53 (104)
133 3fsp_A A/G-specific adenine gl 78.3 3 0.00012 19.5 6.5 71 375-452 63-135 (369)
134 1wh9_A 40S ribosomal protein S 78.0 1.1 4.7E-05 22.6 2.5 52 282-333 11-62 (92)
135 2cte_A Vigilin; K homology typ 77.8 0.86 3.6E-05 23.5 1.9 40 303-342 14-53 (94)
136 3gqc_A DNA repair protein REV1 77.5 3.1 0.00013 19.4 5.3 48 364-413 319-366 (504)
137 2pt7_G HP1451, hypothetical pr 77.4 3.1 0.00013 19.3 5.8 56 282-337 6-64 (152)
138 1im4_A DBH; DNA polymerase PAL 76.7 1.1 4.5E-05 22.8 2.1 36 436-471 185-220 (221)
139 3osn_A DNA polymerase IOTA; ho 76.1 3.3 0.00014 19.2 4.5 90 318-414 196-286 (420)
140 2p6r_A Afuhel308 helicase; pro 74.9 3.6 0.00015 18.9 10.3 82 390-473 574-669 (702)
141 2ctj_A Vigilin; K homology typ 74.4 1.5 6.3E-05 21.7 2.4 40 304-343 15-55 (95)
142 1kea_A Possible G-T mismatches 72.7 4.1 0.00017 18.5 6.6 69 379-453 62-133 (221)
143 3bq0_A POL IV, DBH, DNA polyme 71.0 2.1 8.6E-05 20.7 2.4 45 367-413 186-230 (354)
144 3c65_A Uvrabc system protein C 69.8 0.76 3.2E-05 23.9 0.0 180 242-472 22-209 (226)
145 2r7d_A Ribonuclease II family 66.6 5.4 0.00023 17.6 10.1 18 176-193 164-181 (469)
146 2abk_A Endonuclease III; DNA-r 66.4 5.4 0.00023 17.6 5.1 73 373-452 51-126 (211)
147 3n89_A Defective in GERM LINE 66.1 2.1 8.9E-05 20.6 1.7 32 311-342 266-297 (376)
148 2k5n_A Putative cold-shock pro 63.5 6.1 0.00026 17.2 7.9 54 142-198 3-59 (74)
149 3mr3_A DNA polymerase ETA; POL 62.3 6.4 0.00027 17.1 3.6 90 317-414 215-306 (435)
150 2kiv_A Ankyrin repeat and ster 62.2 2.4 1E-04 20.2 1.3 106 362-472 20-128 (148)
151 2bh8_A 1B11; transcription, mo 60.0 4.7 0.0002 18.0 2.5 53 138-190 13-73 (101)
152 3gku_A Probable RNA-binding pr 59.5 7.1 0.0003 16.7 4.0 51 285-336 68-122 (225)
153 1t94_A Polymerase (DNA directe 57.8 7.6 0.00032 16.5 3.6 87 317-411 242-330 (459)
154 2yqr_A KIAA0907 protein; struc 56.4 6.6 0.00028 17.0 2.8 35 312-346 24-59 (119)
155 1h95_A CSD, Y-box binding prot 56.1 8 0.00034 16.3 5.5 58 138-198 5-72 (79)
156 2h56_A DNA-3-methyladenine gly 55.5 8.2 0.00035 16.3 4.6 85 380-465 83-173 (233)
157 1kg2_A A/G-specific adenine gl 55.0 8.4 0.00035 16.2 5.8 70 374-451 53-125 (225)
158 3hrd_B Nicotinate dehydrogenas 52.9 9 0.00038 16.0 3.6 18 46-64 23-40 (330)
159 2ctf_A Vigilin; K homology typ 51.4 9.5 0.0004 15.8 3.1 38 304-341 25-63 (102)
160 3n5n_X A/G-specific adenine DN 49.7 10 0.00042 15.6 6.8 67 379-452 76-146 (287)
161 1gm5_A RECG; helicase, replica 49.3 10 0.00043 15.6 3.3 25 124-148 457-481 (780)
162 3a0j_A Cold shock protein; OB- 47.8 11 0.00045 15.4 6.1 56 141-197 1-61 (73)
163 1g6p_A Cold shock protein TMCS 47.8 11 0.00045 15.4 4.7 54 142-198 1-59 (66)
164 2dl0_A SAM and SH3 domain-cont 47.5 6.9 0.00029 16.8 1.7 30 372-402 38-67 (97)
165 2w3s_B Xanthine dehydrogenase; 46.2 11 0.00047 15.3 3.6 90 193-306 187-285 (777)
166 1c9o_A CSPB, cold-shock protei 45.9 11 0.00048 15.2 6.2 55 141-198 1-60 (66)
167 3fq3_A Inorganic pyrophosphata 45.2 5.5 0.00023 17.5 0.9 24 269-299 86-109 (197)
168 1dxs_A P53-like transcription 43.9 12 0.00051 15.0 3.5 33 372-405 21-53 (80)
169 3hil_A Ephrin type-A receptor 43.7 12 0.00051 15.0 2.8 28 445-472 36-63 (82)
170 1mpg_A ALKA, 3-methyladenine D 43.6 12 0.00052 15.0 2.7 82 380-463 154-240 (282)
171 1rm6_A 4-hydroxybenzoyl-COA re 43.4 12 0.00052 15.0 3.8 25 189-213 200-224 (769)
172 3gvf_A Inorganic pyrophosphata 43.2 4.5 0.00019 18.2 0.2 24 269-299 86-109 (196)
173 1qez_A Ppase, S-ppase, protein 43.0 4.5 0.00019 18.2 0.2 70 216-299 9-84 (173)
174 2jhn_A ALKA, 3-methyladenine D 42.8 9.5 0.0004 15.8 1.8 69 379-455 159-230 (295)
175 2prd_A Pyrophosphate phosphohy 42.7 4.6 0.00019 18.1 0.2 70 216-299 12-87 (174)
176 1i2a_A 50S ribosomal protein L 42.3 13 0.00054 14.9 2.7 38 22-59 1-41 (219)
177 1sxv_A Inorganic pyrophosphata 42.1 4.8 0.0002 18.0 0.2 25 394-418 143-168 (172)
178 2au7_A Inorganic pyrophosphata 40.9 5.1 0.00022 17.8 0.2 24 269-299 64-87 (175)
179 2qgq_A Protein TM_1862; alpha- 39.7 14 0.00059 14.6 7.0 116 74-192 170-289 (304)
180 1m3q_A 8-oxoguanine DNA glycos 38.8 14 0.0006 14.5 6.2 81 379-460 171-255 (317)
181 2qcp_X Cation efflux system pr 38.4 15 0.00061 14.4 5.2 47 142-188 10-66 (80)
182 3lac_A Pyrrolidone-carboxylate 38.4 3.5 0.00015 19.0 -0.9 52 262-314 118-170 (215)
183 1v38_A SAM-domain protein sams 38.4 15 0.00061 14.4 3.0 40 362-403 18-57 (78)
184 3nrz_C Xanthine dehydrogenase/ 36.6 16 0.00065 14.2 3.6 20 193-212 187-206 (756)
185 3d53_A Inorganic pyrophosphata 36.5 8.9 0.00038 16.0 0.9 23 270-299 66-88 (173)
186 1ffv_B CUTL, molybdoprotein of 35.7 16 0.00067 14.1 3.6 16 49-64 219-234 (803)
187 1k1g_A SF1-BO isoform; splicin 35.6 16 0.00068 14.1 3.7 40 307-346 8-53 (131)
188 1ixr_A Holliday junction DNA h 35.3 16 0.00068 14.1 6.5 54 358-411 70-125 (191)
189 2k53_A A3DK08 protein; NESG, C 34.0 17 0.00071 13.9 3.7 36 369-404 16-53 (76)
190 2bqx_A Inorganic pyrophosphata 33.4 6.3 0.00026 17.1 -0.3 24 269-299 63-86 (173)
191 1ngn_A Methyl-CPG binding prot 33.1 18 0.00074 13.9 7.1 66 371-450 51-119 (155)
192 3ktb_A Arsenical resistance op 32.0 12 0.0005 15.1 0.9 39 253-291 23-63 (106)
193 3kka_C Ephrin type-A receptor 32.0 18 0.00077 13.7 3.6 26 447-472 36-61 (86)
194 3i98_A TH-IPP; pyrophosphatase 31.8 8.7 0.00037 16.1 0.2 23 270-299 66-88 (178)
195 2kg5_A ARF-GAP, RHO-GAP domain 31.2 19 0.00079 13.6 3.2 36 362-398 32-67 (100)
196 2aq4_A DNA repair protein REV1 31.2 19 0.00079 13.6 4.0 48 365-414 246-296 (434)
197 1ow5_A Serine/threonine-protei 30.6 19 0.0008 13.6 3.6 40 361-402 20-59 (85)
198 2ztd_A Holliday junction ATP-d 30.2 19 0.00082 13.5 7.4 48 142-192 21-70 (212)
199 1orn_A Endonuclease III; DNA r 29.8 20 0.00083 13.5 6.1 66 379-452 60-130 (226)
200 1ega_A Protein (GTP-binding pr 29.1 20 0.00085 13.4 3.5 23 307-329 232-255 (301)
201 2k5e_A Uncharacterized protein 29.1 20 0.00085 13.4 3.7 39 367-405 16-56 (73)
202 1n62_B Carbon monoxide dehydro 28.8 20 0.00086 13.4 3.6 16 436-452 787-802 (809)
203 1t3q_B Quinoline 2-oxidoreduct 28.5 21 0.00087 13.3 3.6 94 188-306 209-311 (788)
204 3ofo_C 30S ribosomal protein S 28.4 21 0.00088 13.3 3.2 53 283-335 38-90 (206)
205 1x65_A UNR protein; cell-free 28.3 21 0.00088 13.3 2.5 52 141-192 8-61 (89)
206 3i0w_A 8-oxoguanine-DNA-glycos 28.1 21 0.00088 13.3 4.0 68 381-450 158-226 (290)
207 2kcm_A Cold shock domain famil 27.6 21 0.0009 13.2 6.0 54 142-198 1-60 (74)
208 1v97_A XD, xanthine dehydrogen 27.2 22 0.00092 13.2 3.6 33 140-173 601-642 (1332)
209 1wfq_A UNR protein; beta-barre 26.6 22 0.00094 13.1 6.4 65 138-202 15-82 (89)
210 3giu_A Pyrrolidone-carboxylate 25.9 6.6 0.00028 17.0 -1.3 52 262-314 119-171 (215)
211 1mzp_A 50S ribosomal protein L 25.9 20 0.00083 13.5 1.2 38 22-59 3-45 (217)
212 1ge9_A Ribosome recycling fact 25.6 23 0.00097 13.0 6.2 52 397-450 103-154 (184)
213 2ytx_A Cold shock domain-conta 24.9 24 0.001 12.9 5.0 56 139-197 16-74 (97)
214 1iu8_A Pyrrolidone-carboxylate 24.0 8.7 0.00037 16.1 -0.9 52 262-314 114-166 (206)
215 3h8m_A Ephrin type-A receptor 23.7 25 0.0011 12.7 5.7 40 362-403 31-70 (90)
216 2kfu_A RV1827 PThr 22; FHA dom 23.7 25 0.0011 12.7 3.2 41 144-184 99-139 (162)
217 1dgj_A Aldehyde oxidoreductase 23.7 25 0.0011 12.7 3.8 15 18-32 117-131 (907)
218 2ebj_A Pyrrolidone carboxyl pe 23.5 9 0.00038 16.0 -0.9 52 262-316 114-165 (192)
219 2cpg_A REPA protein, transcrip 23.5 25 0.0011 12.7 3.4 23 8-30 12-34 (45)
220 1x10_A Pyrrolidone-carboxylate 22.4 9.8 0.00041 15.7 -0.9 61 262-323 117-180 (208)
221 1xm3_A Thiazole biosynthesis p 22.3 27 0.0011 12.5 1.8 58 327-384 84-151 (264)
222 2jy9_A Putative tRNA hydrolase 21.7 9 0.00038 16.0 -1.2 19 311-329 9-31 (148)
223 2bl5_A MGC83862 protein, quaki 21.4 28 0.0012 12.4 4.5 38 309-346 5-48 (140)
224 2zjr_M 50S ribosomal protein L 21.2 28 0.0012 12.4 2.0 24 312-335 99-122 (166)
225 1vlb_A Aldehyde oxidoreductase 21.2 28 0.0012 12.4 3.6 31 139-169 205-244 (907)
226 3kgk_A Arsenical resistance op 20.8 25 0.0011 12.7 0.9 83 255-343 22-106 (110)
227 3fhf_A Mjogg, N-glycosylase/DN 20.6 29 0.0012 12.3 3.2 70 384-454 70-144 (214)
228 1aug_A Pyroglutamyl peptidase- 20.4 8.7 0.00037 16.1 -1.5 52 262-314 119-171 (215)
229 1a2z_A Pyrrolidone carboxyl pe 20.4 11 0.00048 15.2 -0.9 52 262-314 118-170 (220)
No 1
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=100.00 E-value=0 Score=919.56 Aligned_cols=342 Identities=41% Similarity=0.720 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHHH
Q ss_conf 89999999999862399999999999999999996136874535999749988399999988517677875323489998
Q gi|254780788|r 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 (526)
Q Consensus 6 ~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A~ 85 (526)
|.+|+.+++++|+||||+++.+++|+|+||.+||+|+||++.+++|.||++||++++|+.|.||++++|+..||+|++|+
T Consensus 2 n~ell~al~~ia~EKgI~~e~vi~aie~Al~~A~kK~~g~~~~i~V~ID~~tGei~v~~~k~VVeev~d~~~eI~l~eAk 81 (344)
T 1hh2_P 2 NIGLLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEVVEEVEDPATQISLEEAK 81 (344)
T ss_dssp CCSSCSSTTTTSSSSCCCHHHHHHHHHHHHHHHHHTTTCSSSCEEEECCSTTCCCEEEEEEEEESSCSCTTSCEEHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 88999999999987297999999999999999996543996857999988998699999988616777864110277766
Q ss_pred HHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 62889864737998508456207999999999999999999887799998520838999998405763899957935874
Q gi|254780788|r 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI 165 (526)
Q Consensus 86 ~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~L 165 (526)
+++|++++||++.++++|.+|||+|||+|||+|.||||++||+.+|++|++|+|+||+|+|+|+++++++||+|+++|+|
T Consensus 82 ~i~~~~~iGD~i~~~i~~~~fgRiaaqtAKQvi~QkIre~Ere~i~~ef~~k~GeIVtG~V~r~~~~~~~vdlg~~ea~L 161 (344)
T 1hh2_P 82 KIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRL 161 (344)
T ss_dssp HHCTTCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEE
T ss_pred HHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCCC
T ss_conf 30113566865886567553078999999999999999999999999999856916888899985240378427645648
Q ss_pred EHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 47874887511527669999976113587028987159889999999976677755808785663167750349999408
Q gi|254780788|r 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 (526)
Q Consensus 166 p~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d 245 (526)
|++||+|||+|++|||+||||.+|+.++|||||+||||||+||++||++|||||++|+|+||+|||+||+||||||+|+|
T Consensus 162 P~~eqip~E~y~~Gdrik~~i~~V~~~~kgp~IilSRt~p~~v~~Lfe~EVPEI~dG~VeIk~IaRepG~RtKvAV~s~d 241 (344)
T 1hh2_P 162 PKKEWIPGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASND 241 (344)
T ss_dssp EGGGSCTTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHHHHHCHHHHHSSEEEEEEEEETTTEEEEEEEESS
T ss_pred CHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECC
T ss_conf 97884975458999989999999875588965899459889999999976589738828999953578772469999348
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 9988127655488621788998627782679955987899999762866542489-875678799998534221102544
Q gi|254780788|r 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRR 324 (526)
Q Consensus 246 ~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~~~qls~AIGk~ 324 (526)
++|||||||||+||||||+|++||+|||||||+||+||++||+|||+||+|.+|. +|++++++.|+||++|||+||||+
T Consensus 242 ~~iDpvGa~vG~~G~ri~~i~~el~ge~idii~~s~d~~~fi~nal~Pa~v~~v~~~~~~~~~~~v~v~~~~~~~aIGk~ 321 (344)
T 1hh2_P 242 PNVDPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKG 321 (344)
T ss_dssp TTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSHHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGG
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHCCC
T ss_conf 87551014565897179999998579935899668999999998449563018999738887799998802402641798
Q ss_pred HHHHHHHHHHHCCEEEEEECCCH
Q ss_conf 27899999861674578552200
Q gi|254780788|r 325 GQNVRLASQLTGWTIDIITEEED 347 (526)
Q Consensus 325 GqNvrLas~Ltg~~idi~~~~~~ 347 (526)
||||||||+||||+|||++..+.
T Consensus 322 G~Nv~la~~l~~~~idi~~~~~~ 344 (344)
T 1hh2_P 322 GQNARLAAKLTGWKIDIKPIMNL 344 (344)
T ss_dssp GHHHHHHHHHHSCEEEEEECCCC
T ss_pred CHHHHHHHHHHCCEEEEEECCCC
T ss_conf 72599999987987522770229
No 2
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=100.00 E-value=0 Score=873.20 Aligned_cols=337 Identities=38% Similarity=0.630 Sum_probs=313.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHH
Q ss_conf 88899999999998623999999999999999999961368745359997499883999999885176778753234899
Q gi|254780788|r 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83 (526)
Q Consensus 4 ~~~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~ 83 (526)
+++.+ |.+++++|+||||+++.+++|+++||.+||||+||.+.+++|.||++||++++|..+ ++
T Consensus 19 ~M~~d-L~aL~~la~EKgI~~e~vi~aieeAl~~AykK~~g~~~~i~V~ID~~tG~i~V~~~e--~d------------- 82 (366)
T 1k0r_A 19 HMNID-MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARE--TD------------- 82 (366)
T ss_dssp CCSCC-CCSSGGGSSBTTBCSSTTTTSSTTTTTSSGGGSSSCCSSCCCCCCSSSCCCCCCEEC--CC-------------
T ss_pred HCHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEE--CC-------------
T ss_conf 15488-999999998729999999999999999999752398677799998889759999984--35-------------
Q ss_pred HHHHCCCCCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCE----EEEEE
Q ss_conf 98628898647379-98508456207999999999999999999887799998520838999998405763----89995
Q gi|254780788|r 84 ARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 (526)
Q Consensus 84 A~~~~~~~~iGD~i-~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~----iiVdl 158 (526)
+.|+.+ +.+.+|.+|||||||+|||+|.||||++||+++|++|++|+|+||+|+|+|+++++ ++|||
T Consensus 83 --------e~~d~i~e~~~~p~~FgRiAaq~AKQvI~QkIREaEre~I~~ef~~k~GeIVtG~V~r~e~~~~~~~viVdL 154 (366)
T 1k0r_A 83 --------EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRI 154 (366)
T ss_dssp --------SSSSCCCEECCCCTTSTTTTTTTTTHHHHHHHHCCC--------CCCTTCEEEEEEECCHHHHHTTCEEEEE
T ss_pred --------CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEC
T ss_conf --------788564351479678609999999999999999999999999999753976888999985588615999973
Q ss_pred CC----CEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 79----35874478748875115276699999761135870289871598899999999766777558087856631677
Q gi|254780788|r 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 (526)
Q Consensus 159 g~----~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG 234 (526)
|+ +||+||++||||+|+|++||||||||++|+.++|||||+||||||+||++||++|||||++|+|+||+|||+||
T Consensus 155 g~~~~~~EaiLP~~EqIp~E~y~~Gdrika~I~eV~~~~~g~~IilSRt~p~fv~~Lfe~EVPEI~dG~VeIk~IaRepG 234 (366)
T 1k0r_A 155 GTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAG 234 (366)
T ss_dssp CCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHHHHHHHHHHCHHHHTTSEEEEEEEEETT
T ss_pred CCCCCCHHCCCCHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCHHHHCCCEEEEEEECCCC
T ss_conf 77655201139987849976689997699999999985899869998798899999998646786388189999843787
Q ss_pred CEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEEC
Q ss_conf 503499994089988127655488621788998627782679955987899999762866542489-8756787999985
Q gi|254780788|r 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVP 313 (526)
Q Consensus 235 ~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~ 313 (526)
+||||||+|+|++|||||||||+||+|||+|++||+|||||||+||+||++||+|||+||+|.+|. +|++++++.|+||
T Consensus 235 ~RtKVAV~s~d~~iDpvGacvG~~G~Ri~~i~~eL~gEkIDii~~s~d~~~fi~nAl~Pa~v~~v~i~d~~~~~~~v~V~ 314 (366)
T 1k0r_A 235 HRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVP 314 (366)
T ss_dssp TEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSHHHHHHHHTTTSCCSEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEEECCCCCCHHHHEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEC
T ss_conf 71479999148974422100035761899999984797379996789999999983797612389987588877999988
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCC
Q ss_conf 342211025442789999986167457855220011010012210001112
Q gi|254780788|r 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 (526)
Q Consensus 314 ~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e 364 (526)
++||||||||+||||||||+||||+|||+|++++.+..+.|......+|++
T Consensus 315 ~~qlslAIGk~G~NvrLaa~Ltg~~IdI~se~~~~~~~~~e~~~~~~~~~~ 365 (366)
T 1k0r_A 315 DFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 365 (366)
T ss_dssp GGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSCC-----------------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHCC
T ss_conf 235257637997059999998799689985443544478435678765314
No 3
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=100.00 E-value=0 Score=671.43 Aligned_cols=237 Identities=42% Similarity=0.681 Sum_probs=230.6
Q ss_pred HHHHHHCCCEEEEEEEECCCCE----EEEEECC----CEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf 9998520838999998405763----8999579----3587447874887511527669999976113587028987159
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~----iiVdlg~----~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt 203 (526)
.+|++|+|+||+|+|+|+++++ ++||||+ +||+||+++|||+|+|++|||+||||++|+.++|||||+||||
T Consensus 1 ~Efk~k~GeIVtG~V~r~er~n~~~~viVdLG~~~~~~EaiLP~~EqIp~E~~~~Gdrikv~I~eV~~~~kg~qIilSRt 80 (251)
T 2asb_A 1 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRT 80 (251)
T ss_dssp ---CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEESS
T ss_pred CCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCEEEECCHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECC
T ss_conf 97101279289999999835897258999868877651597897895998767999999999999997598616788438
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 88999999997667775580878566316775034999940899881276554886217889986277826799559878
Q gi|254780788|r 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 (526)
Q Consensus 204 ~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~ 283 (526)
||+||++||++|||||++|+|+||+|||+||.||||||+|+|++|||||||||+||+|||+|++||+|||||||.||+||
T Consensus 81 ~p~~v~~Lfe~EVPEI~~G~VeIk~IaR~pG~RtKIAV~s~d~~iDpvGacVG~~GsRI~~I~~eL~gEkIDii~~s~d~ 160 (251)
T 2asb_A 81 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP 160 (251)
T ss_dssp CHHHHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCH
T ss_conf 98999999996407741896899998317886237999924898350236750575089999998679811268678888
Q ss_pred HHHHHHHCCCCCCCEEE-ECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCC
Q ss_conf 99999762866542489-87567879999853422110254427899999861674578552200110100122100011
Q gi|254780788|r 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 (526)
Q Consensus 284 ~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f 362 (526)
++||+|||+||+|.+|. +|++++++.|+||++|||+||||+||||||||+||||+|||+|++++.+.++.+.....++|
T Consensus 161 ~~fi~nAl~Pa~v~~V~~~de~~~~~~v~V~~~qlslAIGk~G~NvrLAs~Ltg~~IdI~se~~~~~~~~~e~~~~~~~~ 240 (251)
T 2asb_A 161 ARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMA 240 (251)
T ss_dssp HHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSCC-----SCCC------
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99998626974225999984777289999084464586668871399999977988999965314333442467889999
Q ss_pred CCCCCC
Q ss_conf 122588
Q gi|254780788|r 363 MQAINV 368 (526)
Q Consensus 363 ~e~LdV 368 (526)
.+.|+.
T Consensus 241 ~~~le~ 246 (251)
T 2asb_A 241 HDRLEH 246 (251)
T ss_dssp ------
T ss_pred HHHHHH
T ss_conf 987640
No 4
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=100.00 E-value=3.2e-33 Score=261.81 Aligned_cols=128 Identities=37% Similarity=0.570 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHH
Q ss_conf 88999999999986239999999999999999999613687453599974998839999998851767787532348999
Q gi|254780788|r 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA 84 (526)
Q Consensus 5 ~~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A 84 (526)
+|.|||.+++++|+||||+++.++++|++||.+||||+||.+.+++|.||++||++++|+.|.||++++++..+|+|++|
T Consensus 1 M~~eil~al~~la~EKgI~~e~l~~ale~Al~~A~kK~~g~~~~~~V~iD~~tG~i~v~~~~~VVe~~e~~~~eI~l~eA 80 (129)
T 2kwp_A 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAA 80 (129)
T ss_dssp CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEEEEEEEEETTCSCTTTEEEHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHH
T ss_conf 97899999999998729999999999999999999870599764799996789959999999970687665433548888
Q ss_pred HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 862889864737998508456207999999999999999999887799
Q gi|254780788|r 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 (526)
Q Consensus 85 ~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ 132 (526)
++++|++++||++..+++|.+|||+|||+|||+|.||+|++||+.+|+
T Consensus 81 ~~~d~~~~vGd~~~~~~~~~~fgRiAaq~AkQvi~QkiRe~Ere~i~~ 128 (129)
T 2kwp_A 81 RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMLVP 128 (129)
T ss_dssp HHHHTTCCTTCEEEEECCCCCGGGSCHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 752567766877887027688388999999999999999999998854
No 5
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=99.64 E-value=1.8e-16 Score=138.78 Aligned_cols=67 Identities=28% Similarity=0.543 Sum_probs=62.9
Q ss_pred HCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-C
Q ss_conf 428435664077999899999998798478896532677521231234443211245334358899999999998412-2
Q gi|254780788|r 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY-K 508 (526)
Q Consensus 430 e~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~-~ 508 (526)
+..|+++|++++||++.|+.+|++|||+|++|||+||+|||+++. ++++++|++|||+||+ |
T Consensus 2 d~~p~ddL~~leG~~~~~~~~L~e~gI~t~edLAdls~dEL~ei~-----------------~i~ee~A~~lIM~AR~~~ 64 (70)
T 1wcn_A 2 DNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE-----------------GLTDEKAGALIMAARNIC 64 (70)
T ss_dssp TTCCCHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSS-----------------SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHC-----------------CCCHHHHHHHHHHHHHCC
T ss_conf 876389997178989999999999699749999872899998761-----------------689999999999998665
Q ss_pred CCCCCCC
Q ss_conf 5788800
Q gi|254780788|r 509 MGWIEKE 515 (526)
Q Consensus 509 ~gWf~~e 515 (526)
||++|
T Consensus 65 --Wf~ee 69 (70)
T 1wcn_A 65 --WFGDE 69 (70)
T ss_dssp --TTCTT
T ss_pred --CCCCC
T ss_conf --76657
No 6
>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A
Probab=99.63 E-value=3.8e-16 Score=136.31 Aligned_cols=135 Identities=18% Similarity=0.328 Sum_probs=120.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEE
Q ss_conf 89871598899999999766777558087856631677503499994089988127655488621788998627782679
Q gi|254780788|r 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 (526)
Q Consensus 197 qi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDi 276 (526)
.+.||..|..++ .||+... +.-....+.++++.|-...|.+++ ||+++|..|++|+.+ ++..|.+|++
T Consensus 4 ~~~l~~~~~r~i-~lfe~~t-----~~~~~~c~~~d~~~~iifvVp~~~-----vG~iIGkgG~~Ik~i-~e~tg~~I~v 71 (144)
T 2cxc_A 4 DYRITLEELRYI-SVFHSIT-----GVTAYRCIVDEENNRLIFLVSEGE-----AGRAIGRGGRLIKLL-REALGKNIEV 71 (144)
T ss_dssp ---CCHHHHHHH-HHHHHHH-----SCCEEEEEEEGGGTEEEEEECTTC-----HHHHHCGGGHHHHHH-HHHHSSEEEE
T ss_pred CEEECHHHHHHH-HHHHHHH-----CCCEEEEEEECCCCEEEEEECCCH-----HHHEECCCCHHHHHH-HHHHCCEEEE
T ss_conf 688689998999-9999986-----985368999379998999988672-----424158781899999-9971990898
Q ss_pred EECCCCHHHHHHHHCCCCCCCEEEECCCC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 95598789999976286654248987567--87999985342211025442789999986167457855
Q gi|254780788|r 277 VVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 277 i~ws~d~~~fi~nAl~PA~v~~v~~de~~--~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
+.|++||..|+.|+++|+.+..+.+++.. ..+.+.||+++..++|||+|+|+|++.+||||.++|.+
T Consensus 72 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vG~iIGK~G~nIr~i~~l~~~~~~I~~ 140 (144)
T 2cxc_A 72 VEYSSDLERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EECCSSHHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred ECCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECHHHEEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf 636688789864057863279999841678457999948565655667897899999999876459769
No 7
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=99.47 E-value=1.7e-14 Score=124.21 Aligned_cols=66 Identities=38% Similarity=0.574 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 100011122588846788887732111477750588887765305889999999999999999999
Q gi|254780788|r 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 (526)
Q Consensus 357 ~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~ 422 (526)
...+.|++.|+||+++|++||++||+|+|+|||+|.++|..|+|||++++.+|++||++||..++.
T Consensus 3 a~~~~F~e~LdvDe~iA~lLv~EGF~siEeIAy~~~~eL~~IegfDee~a~eL~~RA~~~l~~~a~ 68 (70)
T 1u9l_A 3 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 68 (70)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 489999998486399999999865597999875999999763155899999999999999999986
No 8
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.31 E-value=3.4e-06 Score=63.18 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=59.4
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC--CCEEEEEHHHC-------CCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHH
Q ss_conf 20838999998405763899957--93587447874-------887511527669999976113587028987159889
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG--NSDGVIRRDET-------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg--~~ea~Lp~~e~-------ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~ 206 (526)
+.|.+++|+|.+++...++|++| +..|+||..+. -|.+.|++|+.++|.|.+|+...+ ++.||+.+..
T Consensus 20 ~~G~iv~G~V~~i~~~G~~V~~g~~~~~G~l~~~e~~~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~--~v~LS~k~~~ 96 (119)
T 1wi5_A 20 KPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGG--VVSLSVGHSE 96 (119)
T ss_dssp CTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSC--EEEEECCCCC
T ss_pred CCCCEEEEEEEEECCCEEEEEECCCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCC--EEEEEECHHH
T ss_conf 8998999999983398799980675432301255641234445743232589999999999989999--9999614787
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.28 E-value=6.9e-07 Score=68.27 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=39.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 111225888467888877321114777505888877653058899999999999999
Q gi|254780788|r 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 361 ~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
.+-+..+|....++.|.++||.|+++|+++++.+|+++.|+++..|.+++..|+...
T Consensus 36 ~l~~l~gv~~~~~~kL~~aG~~t~~~l~~~~~~~L~~~~gis~~~a~kii~~a~~~~ 92 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAA 92 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred CHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 763379969999999998699729999708999999864989999999999999753
No 10
>1kl9_A Eukaryotic translation initiation factor 2 subunit 1; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.09 E-value=1.8e-05 Score=57.86 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=59.8
Q ss_pred HHHCCCEEEEEEEECCCCEEEEEE---CCCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEE--CC
Q ss_conf 852083899999840576389995---7935874478748------875115276699999761135870289871--59
Q gi|254780788|r 135 KDKVGEIISGTVKRVEYGNVIVDL---GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS--RT 203 (526)
Q Consensus 135 ~~r~Geiv~G~V~r~e~~~iiVdl---g~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lS--Rt 203 (526)
-.++|++|.|+|.++...+++|+| |+.+|++|.+|.- |++.|++||++.|.|.+|+.+.+ +|.|| +.
T Consensus 12 ~P~~G~iv~g~V~~i~~~G~fV~l~ey~gi~Glih~seis~~~i~~~~~~~kvG~~v~~kVl~vd~~~~--~I~LS~K~v 89 (182)
T 1kl9_A 12 FPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKG--YIDLSKRRV 89 (182)
T ss_dssp SCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTT--EEEEESTTC
T ss_pred CCCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCC--EEEEEEEEC
T ss_conf 899989999999999666799996577993799878994777556830137899999999987607788--799971147
Q ss_pred CHH
Q ss_conf 889
Q gi|254780788|r 204 HPQ 206 (526)
Q Consensus 204 ~p~ 206 (526)
.++
T Consensus 90 ~~~ 92 (182)
T 1kl9_A 90 SPE 92 (182)
T ss_dssp CHH
T ss_pred CCC
T ss_conf 817
No 11
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha subunit; transferase, protein biosynthesis, protein synthesis/transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.07 E-value=1.8e-05 Score=57.83 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=58.0
Q ss_pred HHCCCEEEEEEEECCCCEEEEEEC---CCEEEEEHHHC------CCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 520838999998405763899957---93587447874------8875115276699999761135870289871598
Q gi|254780788|r 136 DKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~~iiVdlg---~~ea~Lp~~e~------ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~ 204 (526)
.++|++|+|+|.++....++|+|+ +++|++|.++. -|.+.|++||.++|.|.+|+...+ .|.||...
T Consensus 13 p~~G~iv~g~V~~i~~~G~fV~l~~~~gieg~v~~sels~~~v~~~~~~~~~G~~v~~kVi~vd~~~~--~i~LS~k~ 88 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKG--YIDLSKRR 88 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTT--EEEEESTT
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHHCCCCCCCHHHEEECCCEEEEEEEEECCCCC--EEEEEEEE
T ss_conf 99989999999999888799997787984999986894756555742445279889999967516685--18999767
No 12
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.02 E-value=2.7e-05 Score=56.55 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=57.6
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 20838999998405763899957-935874478748------8751152766999997611358702898715
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSR 202 (526)
++|++++|+|.++...+++|+|+ +.+|++|.++.- |.+.|++||.|+|.|.+++.+.+ +|.||+
T Consensus 6 ~vG~iv~g~V~~v~~~G~fV~l~~g~~Glv~~sels~~~~~~~~~~~~~G~~v~v~V~~id~~~~--~i~LS~ 76 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKG--KISLSI 76 (130)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTT--EEEEES
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCC--EEEEEE
T ss_conf 89999999999997887999989997899881020221222445356899999999999968999--899997
No 13
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.01 E-value=3.2e-05 Score=56.03 Aligned_cols=66 Identities=30% Similarity=0.475 Sum_probs=58.2
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCCCC--CCCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 20838999998405763899957-93587447874887--5115276699999761135870289871598
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~ip~--E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~ 204 (526)
++|+++.|+|.++....++|+|+ +.+|++|.++.... ++|++||.++|.|.+|+.+.+ +|-||..-
T Consensus 4 k~G~iv~G~V~~i~~~G~fV~l~~~i~Glv~~sels~~~~~~~~~Gd~v~vkV~~vd~~~~--rI~Ls~~~ 72 (80)
T 2k52_A 4 EPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKR--EIDFKYIP 72 (80)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTT--EEEEEECS
T ss_pred CCCCEEEEEEEEEECCEEEEECCCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEECCCC--EEEEEEEE
T ss_conf 7899999999999675799992999899999799388512168899989999999989889--99799773
No 14
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.99 E-value=2.9e-05 Score=56.33 Aligned_cols=74 Identities=18% Similarity=0.355 Sum_probs=61.7
Q ss_pred HHHHHHHHH--HCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCC-------CCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 877999985--20838999998405763899957-935874478748-------87511527669999976113587028
Q gi|254780788|r 128 DRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI-------SRENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 128 ~~i~~ef~~--r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i-------p~E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
..-+++|.. .+|+++.|+|.++....++|+|+ +.+|++|.+++- |...|++||.|++.|.+|..+.+ +
T Consensus 18 ~dPw~~~~~k~~vG~iv~G~V~~I~d~G~fV~l~~~i~Gli~~sels~~~~~~~~~~~~~vG~~v~vkVi~vD~~~~--k 95 (115)
T 2khi_A 18 GSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR--R 95 (115)
T ss_dssp ---CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTT--E
T ss_pred CCCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCEECCHHHEECCCCEEEEEEEEEECCCC--E
T ss_conf 99289999658998999999999968669999799978999986303532013631220699899999999989999--9
Q ss_pred EEEECC
Q ss_conf 987159
Q gi|254780788|r 198 VLLSRT 203 (526)
Q Consensus 198 i~lSRt 203 (526)
|.||+-
T Consensus 96 I~LS~K 101 (115)
T 2khi_A 96 ISLGLK 101 (115)
T ss_dssp EEECCC
T ss_pred EEEEEE
T ss_conf 999875
No 15
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=97.99 E-value=6.4e-05 Score=53.79 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=58.6
Q ss_pred HHCCCEEEEEEEECCCCEEEEEE---CCCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEE--CCC
Q ss_conf 52083899999840576389995---7935874478748------875115276699999761135870289871--598
Q gi|254780788|r 136 DKVGEIISGTVKRVEYGNVIVDL---GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS--RTH 204 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~~iiVdl---g~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lS--Rt~ 204 (526)
.++|++|.|+|.++...+++|+| ++.+|++|.+|.- |++.|++|++++|.|..|+.+.+ +|.|| +..
T Consensus 11 Pe~GdiV~g~V~~i~~~GafV~L~ey~gieGli~isEls~~~i~~~~~~~kvGq~v~vkVl~vd~e~~--~I~LSlK~v~ 88 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKG--YIDLSKRRVS 88 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTT--EEEEECSSCC
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCC--EEEEEECCCC
T ss_conf 99989999999999735599997179990899898987875448989916799999999967507772--7999952058
Q ss_pred HH
Q ss_conf 89
Q gi|254780788|r 205 PQ 206 (526)
Q Consensus 205 p~ 206 (526)
++
T Consensus 89 ~~ 90 (308)
T 1q8k_A 89 PE 90 (308)
T ss_dssp HH
T ss_pred HH
T ss_conf 46
No 16
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.98 E-value=2.2e-05 Score=57.23 Aligned_cols=73 Identities=26% Similarity=0.401 Sum_probs=61.1
Q ss_pred HHHHHHHHH--CCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 779999852--0838999998405763899957-935874478748------8751152766999997611358702898
Q gi|254780788|r 129 RQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVL 199 (526)
Q Consensus 129 ~i~~ef~~r--~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~ 199 (526)
..|++|.+. +|++++|+|.+++...++|+|+ +.+|++|.++.- |...|++|+.++|.|.+++...+ .|.
T Consensus 20 ~~f~~~~~~~k~G~iv~G~V~~I~~~Gv~V~l~~~i~G~i~~~els~~~~~~~~~~~~vG~~v~vkVi~id~~~~--~I~ 97 (109)
T 2khj_A 20 HMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR--AIS 97 (109)
T ss_dssp -CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTT--EEE
T ss_pred CCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCCCEECCCCEEEEEEEEEECCCC--EEE
T ss_conf 728999864899999999999998977999979997899868992755312602076899999999999989999--999
Q ss_pred EECC
Q ss_conf 7159
Q gi|254780788|r 200 LSRT 203 (526)
Q Consensus 200 lSRt 203 (526)
||..
T Consensus 98 LS~K 101 (109)
T 2khj_A 98 LSVR 101 (109)
T ss_dssp EETT
T ss_pred EEEE
T ss_conf 9856
No 17
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=97.95 E-value=0.0001 Score=52.39 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=64.1
Q ss_pred HHCCCEEEEEEEECCCCEEEEEEC---CCEEEEEHHHCCC------CCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHH
Q ss_conf 520838999998405763899957---9358744787488------7511527669999976113587028987159889
Q gi|254780788|r 136 DKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~~iiVdlg---~~ea~Lp~~e~ip------~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~ 206 (526)
..+|++|.|+|.++...+++|+|+ +.+|++|.+|.-. ++.|++|+++.|.|..|+...+.-.+-+-|..++
T Consensus 9 Pe~G~~V~g~V~~I~~~GafV~l~e~~gieGli~~Seis~~~v~~~~~~~k~Gq~v~~kVl~vd~~~~~i~LSlk~v~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCCEEECCCCCCCC
T ss_conf 99999999999999724189997367994799898987874204988837899989999974257761112024556758
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780788|r 207 FMVKLFH 213 (526)
Q Consensus 207 ~l~~Lf~ 213 (526)
--....+
T Consensus 89 ~~~~~~~ 95 (275)
T 3aev_A 89 QRKAKLQ 95 (275)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
T ss_conf 4888998
No 18
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B
Probab=97.74 E-value=2.2e-05 Score=57.21 Aligned_cols=66 Identities=29% Similarity=0.299 Sum_probs=56.8
Q ss_pred HHCCCEEEEEEEECCCCEEEEEE---CCCEEEEEHHHCCC------CCCCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf 52083899999840576389995---79358744787488------7511527669999976113587028987159
Q gi|254780788|r 136 DKVGEIISGTVKRVEYGNVIVDL---GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~~iiVdl---g~~ea~Lp~~e~ip------~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt 203 (526)
+.+|++|+|+|.++...+++|+| |+.+|++|.+|.-+ ++.|++|+++.|.|.+|+.+.+ +|.||+.
T Consensus 9 Pe~G~iv~g~V~~i~~~G~fV~l~ey~~~eG~i~~sEis~~~i~~~~~~~~vG~~v~~kVi~vd~~~~--~i~LS~k 83 (266)
T 3cw2_C 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKG--TVDVSLK 83 (266)
T ss_dssp CCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSC--CCBEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCC--CEEEEEC
T ss_conf 89999999999999833599997577990899898996886447988928899999999966527663--2277841
No 19
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=0.00013 Score=51.44 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=59.6
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC--CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf 20838999998405763899957--935874478748------87511527669999976113587028987159
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG--NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg--~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt 203 (526)
..|.|+.|+|.++..-.++|+|+ ..+|++|.++.- |.+.|++||+|+|.|.+++...+..++-||..
T Consensus 21 e~g~I~~G~V~~V~~~G~FV~l~g~~~dGlvhisels~~~v~~~~~~~~vGd~V~vkVi~id~~~~r~~lsLs~k 95 (119)
T 2cqo_A 21 ALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMK 95 (119)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEEST
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEEECCCCCCEEEEEEE
T ss_conf 789579999999965288999789872089866680466667988803899999999999978778648873602
No 20
>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A
Probab=97.66 E-value=1.2e-05 Score=59.10 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=75.3
Q ss_pred HHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 76286654248987567879999853422110254427899999861674578552200110100122100011122588
Q gi|254780788|r 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 (526)
Q Consensus 289 nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdV 368 (526)
.++..|.+...++|++..++..+||..+..++|||+|.|+|-..+.||.+|++...+......-... ..
T Consensus 19 e~~t~~~~~~c~~~d~~~~iifvVp~~~vG~iIGkgG~~Ik~i~e~tg~~I~v~e~~~~~~~~~~~~-----------~~ 87 (144)
T 2cxc_A 19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSDLERIVKNL-----------FP 87 (144)
T ss_dssp HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSSHHHHHHHH-----------ST
T ss_pred HHHHCCCEEEEEEECCCCEEEEEECCCHHHHEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHCC-----------CC
T ss_conf 9986985368999379998999988672424158781899999997199089863668878986405-----------78
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8467888877321114777505888877653058899999999999999
Q gi|254780788|r 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 369 DE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
....+...+.+...+......++.+..-.+-|=.-..+.+++.-...++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~Vp~~~vG~iIGK~G~nIr~i~~l~~~~~ 136 (144)
T 2cxc_A 88 GVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLF 136 (144)
T ss_dssp TSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCEEEEEEECHHHEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 6327999984167845799994856565566789789999999987645
No 21
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=97.59 E-value=3.1e-05 Score=56.13 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 5888467888877321114777505888877653058899999999999999
Q gi|254780788|r 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 366 LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
.+|....++.|.++||.|+++|+.+++++|.+|.||.+..|..+++.|+..+
T Consensus 31 ~Gvg~~~i~KL~~aG~~Tv~~Ia~~t~~eL~~i~Gi~e~~A~KIi~aark~~ 82 (114)
T 1b22_A 31 CGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp TTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 8999999999999697449999848999997666988999999999999874
No 22
>3go5_A Multidomain protein with S1 RNA-binding domains; joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4}
Probab=97.50 E-value=0.00057 Score=46.81 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=38.2
Q ss_pred HCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCH
Q ss_conf 208389999984057638999579358744787488751152766999997611358702898715988
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p 205 (526)
.+|.+|+|+|.+.....++|+.++.++.||++|. .+++||.|.+||+. ..+. .+++|...|
T Consensus 5 ~~g~iv~g~V~~~~d~g~~v~~~g~~~~l~k~e~----~~~iGd~i~Vfvy~-D~e~---r~~aT~~~p 65 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKDGQTYALAKEEG----QHTVGDTVKGFAYT-DMKQ---KLRLTTLEV 65 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGC----CCCTTSEEEEEEEE-CTTS---CEEEECSCC
T ss_pred CCCCEEEEEEEEEECCEEEEECCCEEEEECCCCC----CCCCCCEEEEEEEE-CCCC---CEEEECCCC
T ss_conf 6775899999998278799953998997052016----67899999999999-8889---898413677
No 23
>3go5_A Multidomain protein with S1 RNA-binding domains; joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4}
Probab=97.39 E-value=0.001 Score=44.98 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-EEEEEEC--CCEEEEE
Q ss_conf 986473799850845620799999999999999999988779999852083899999840576-3899957--9358744
Q gi|254780788|r 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLG--NSDGVIR 166 (526)
Q Consensus 90 ~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~-~iiVdlg--~~ea~Lp 166 (526)
..++||.++.-+-...=+|+.|++-+- +-++|+++.|.|..+.++ .++||+| +.++++|
T Consensus 39 ~~~iGd~i~Vfvy~D~e~r~~aT~~~p------------------~~~vGe~~~~kVv~v~~~~GaFvD~Gl~~kdl~vp 100 (285)
T 3go5_A 39 QHTVGDTVKGFAYTDMKQKLRLTTLEV------------------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVS 100 (285)
T ss_dssp CCCTTSEEEEEEEECTTSCEEEECSCC------------------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEE
T ss_pred CCCCCCEEEEEEEECCCCCEEEECCCC------------------CEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCC
T ss_conf 678999999999998889898413677------------------46239899999999826726999956876453333
Q ss_pred HHHCCCCCC--CCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 787488751--15276699999761135870289871598
Q gi|254780788|r 167 RDETISREN--LRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 (526)
Q Consensus 167 ~~e~ip~E~--~~~Gdrika~i~~V~~~~rgpqi~lSRt~ 204 (526)
.+++.+... .+.|+++.+++. +.+. +..+.+|+..
T Consensus 101 ~~~~~~~~~~~~~~G~~v~V~l~-~D~~--~r~i~~~~~~ 137 (285)
T 3go5_A 101 LDILPELKELWPKKGDQLYIRLE-VDKK--DRIWGLLAYQ 137 (285)
T ss_dssp GGGSCSSGGGSCCTTCEEEEEEE-ECTT--SCEEEEECCH
T ss_pred HHHCCCCCCCCCCCCEEEEEEEE-ECCC--CCEEEEEHHH
T ss_conf 03267332037889849999999-8078--8788651022
No 24
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.38 E-value=2e-05 Score=57.53 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 225888467888877321114777505888877653058899999999999999
Q gi|254780788|r 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 364 e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
+-.+++..+++.|..+||.|+++++.+++.+|+++-|++++.|.+++..|++..
T Consensus 16 ~l~gi~~~~~~kL~~~g~~t~~~l~~~~~~~L~~~~gls~~~a~kil~~a~~~~ 69 (324)
T 2z43_A 16 DLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ------------------------------------------------------
T ss_pred HCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 279979999999998699619999718999999874989999999999998742
No 25
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.38 E-value=0.00033 Score=48.56 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=73.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 88776530588999999999999999999998987754284356640779998999999987984788965326775212
Q gi|254780788|r 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 393 eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
+++.+++.||+..+++......... +....-++|.+|+|+++..+.+|.+.|+.|++|||.++..||..
T Consensus 4 ~e~~e~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~gv~~~~~~kL~~aG~~t~~~l~~~~~~~L~~ 72 (349)
T 1pzn_A 4 EEVKEIDEFEELGFEPATEETPKKK-----------KKEKIIRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKE 72 (349)
T ss_dssp ------------------------------------------CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC-----------CCHHCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf 2555515545324675322333211-----------21000157633799699999999986997299997089999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 312344432112453343588999999999984122578
Q gi|254780788|r 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 (526)
Q Consensus 473 ~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~~gW 511 (526)
+. ++++..|.++|+.||+..+.
T Consensus 73 ~~-----------------gis~~~a~kii~~a~~~~~~ 94 (349)
T 1pzn_A 73 VA-----------------GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp HH-----------------CCCHHHHHHHHHHHHHHCST
T ss_pred HH-----------------CCCHHHHHHHHHHHHHHCCC
T ss_conf 64-----------------98999999999999975376
No 26
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.37 E-value=0.00094 Score=45.24 Aligned_cols=110 Identities=19% Similarity=0.359 Sum_probs=83.0
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HC
Q ss_conf 1225888467888877321-11477750588887765305889999999999999999999989877542843566--40
Q gi|254780788|r 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL--CS 439 (526)
Q Consensus 363 ~e~LdVDE~iA~~LV~eGf-~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L--~~ 439 (526)
++.-++.+.+.+.|+++|| +++.++.....++|..++||.+..+..|.+.-.. -+......=| +.
T Consensus 444 l~I~GlG~~~i~~L~e~g~I~~i~Diy~L~~~~l~~l~gfg~ksa~nll~sIe~------------sk~~~l~r~L~aLG 511 (667)
T 1dgs_A 444 MDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEE------------SKHRGLERLLYALG 511 (667)
T ss_dssp SCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHH------------GGGCCHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH------------HCCCCHHHHHHHCC
T ss_conf 275760899999998678727678841378877635776340237899999876------------41462677777506
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 779998999999987984788965326775212312344432112453343588999999999
Q gi|254780788|r 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMI 502 (526)
Q Consensus 440 l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lI 502 (526)
++++....+-.|+.+ .++++.|...+.++|..+. ++....|.++.
T Consensus 512 Ip~vG~~~ak~L~~~-f~~l~~l~~as~e~L~~I~-----------------GIG~~~A~si~ 556 (667)
T 1dgs_A 512 LPGVGEVLARNLARR-FGTMDRLLEASLEELIEVE-----------------EVGELTARAIL 556 (667)
T ss_dssp CSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHTST-----------------TCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-CCCHHHHHCCCHHHHHCCC-----------------CCCHHHHHHHH
T ss_conf 787448999999887-5999998607999985779-----------------94899999999
No 27
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00092 Score=45.30 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=53.1
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC----CCEEEEEHHHCC-------CCCCCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf 20838999998405763899957----935874478748-------87511527669999976113587028987159
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG----NSDGVIRRDETI-------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg----~~ea~Lp~~e~i-------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt 203 (526)
.+|+++.|+|..+..-.++|+|+ +.+|++|.++.- |.+.|+.||+++|.|.+++.. .+-||+.
T Consensus 11 evG~i~~g~V~~V~~fG~FV~l~~~~~~~~GlvhiSels~~~~~~~~~~~~~~Gd~v~~kVl~id~~----ki~LSlK 84 (103)
T 2eqs_A 11 TIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT----KTSLSMK 84 (103)
T ss_dssp CTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT----EEEEEST
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHEECCCCEEEEEEEEEECC----EEEEEEE
T ss_conf 8999999999999465789994686567313113657324444468746316999999999998588----5188637
No 28
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=97.26 E-value=0.00069 Score=46.23 Aligned_cols=74 Identities=26% Similarity=0.379 Sum_probs=61.0
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC-----------------CCCCCCCEEEEEEEEECCCCC-
Q ss_conf 99852083899999840576389995793587447874887-----------------511527669999976113587-
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-----------------ENLRPGDRVKSYIYDVRREQR- 194 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~-----------------E~~~~Gdrika~i~~V~~~~r- 194 (526)
-|+..+||++.|+|..+..-.++|.+|..+++++.....|. ..|+.||.||+-|..|+...+
T Consensus 76 v~~p~~gev~~g~V~~v~~~Gifv~i~~~~~~~~~~~~~~d~~~fd~~~~~~~g~~~~~~~~~Gd~VrvrV~~v~~~~~~ 155 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred EEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCHHHCCCCCEEECHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCC
T ss_conf 99546898999999988720489994584430107783897466766656378867898998999899999998467666
Q ss_pred --EEEEEEECCCHH
Q ss_conf --028987159889
Q gi|254780788|r 195 --GPQVLLSRTHPQ 206 (526)
Q Consensus 195 --gpqi~lSRt~p~ 206 (526)
...|.+|...|.
T Consensus 156 ~~~~~I~~s~~~~g 169 (187)
T 1go3_E 156 KRGSKIALTMRQPY 169 (187)
T ss_dssp ---CEEEEECCSTT
T ss_pred CCCCEEEEECCCCC
T ss_conf 76658999846788
No 29
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.25 E-value=0.00087 Score=45.47 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCC----------------CCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 99985208389999984057638999579358744787488----------------75115276699999761135870
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS----------------RENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip----------------~E~~~~Gdrika~i~~V~~~~rg 195 (526)
.-|+.+.|+++.|+|..+....+++.+|..++++|+....+ +..|+.||.||+-|..|+.+.+.
T Consensus 77 ~v~~p~~ge~i~g~V~~v~~~Gi~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Gd~V~vkV~~v~~~~~~ 156 (171)
T 1y14_B 77 VVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (171)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEEEEEECCEEEEEECCCEEEEECHHCCCCEEECHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCC
T ss_conf 99835799899999999967879999569469987211344258865883689861881993899999999999826486
Q ss_pred EEEEEECCCHH
Q ss_conf 28987159889
Q gi|254780788|r 196 PQVLLSRTHPQ 206 (526)
Q Consensus 196 pqi~lSRt~p~ 206 (526)
.+++-|-..|.
T Consensus 157 i~iig~l~~~~ 167 (171)
T 1y14_B 157 IHAIGSIKEDY 167 (171)
T ss_dssp EEEEEECCSTT
T ss_pred CEEEEEECCCC
T ss_conf 28999988898
No 30
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=97.18 E-value=0.012 Score=37.20 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=84.5
Q ss_pred HHHHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHHHC----------CCCCCCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 999985208389999984057638999579-3587447874----------88751152766999997611358702898
Q gi|254780788|r 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDET----------ISRENLRPGDRVKSYIYDVRREQRGPQVL 199 (526)
Q Consensus 131 ~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~e~----------ip~E~~~~Gdrika~i~~V~~~~rgpqi~ 199 (526)
...|..++|++|.|.|.++....+.||++. ..|+||..+. -.+..|++||-+.|-|..+.... .+.
T Consensus 59 ~~~y~P~~GD~ViG~V~~v~~~~~~vdI~~~~~a~L~~~~~~~~~~~~~~~~~r~~~~~GD~v~ArV~~v~~~~---~~~ 135 (235)
T 2z0s_A 59 KEIYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTR---SPL 135 (235)
T ss_dssp -CCCCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTS---CEE
T ss_pred CCCEECCCCCEEEEEEEEEECCEEEEECCCCCCEEECHHHCCCCCCCCCCCCCHHHHHHHHEEEEEEEEECCCC---EEE
T ss_conf 77300466999999993870544899838853116147770342321245421244431014389999612665---046
Q ss_pred EECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 71598899999999766777558087856631677503499994089988127655488621788998627782679955
Q gi|254780788|r 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 (526)
Q Consensus 200 lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~w 279 (526)
||- |++|..-
T Consensus 136 Lt~----------------------------~~~~~G~------------------------------------------ 145 (235)
T 2z0s_A 136 LTV----------------------------QGEGLGR------------------------------------------ 145 (235)
T ss_dssp EEC----------------------------CSSSCEE------------------------------------------
T ss_pred EEC----------------------------CCCCCCC------------------------------------------
T ss_conf 603----------------------------3445513------------------------------------------
Q ss_pred CCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf 98789999976286654248987567879999853422110254427899999861674578
Q gi|254780788|r 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 (526)
Q Consensus 280 s~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi 341 (526)
-..-..+-||......-||++|-+.+....-|+.+|.|
T Consensus 146 ------------------------L~~G~~~~V~~~~i~~lig~~g~~i~~i~~~~~~~I~v 183 (235)
T 2z0s_A 146 ------------------------IVRGKIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV 183 (235)
T ss_dssp ------------------------CCSSEEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE
T ss_pred ------------------------CCCEEEEECCHHHHHHHCCCCCEEHHHHHHCCCEEEEE
T ss_conf ------------------------78726986087883242058844524265273819999
No 31
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=97.15 E-value=0.00058 Score=46.78 Aligned_cols=52 Identities=29% Similarity=0.427 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 5888467888877321114777505888877653058899999999999999
Q gi|254780788|r 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 366 LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
.+|+..+.+.|..+||+|+++++++++.+|..+.|+.++.+.++...++..+
T Consensus 9 ~g~~~~~~~kL~~ag~~t~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 60 (322)
T 2i1q_A 9 PGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLC 60 (322)
T ss_dssp TTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9989999999998699609999739999999874999999999999999873
No 32
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.14 E-value=0.00053 Score=47.04 Aligned_cols=55 Identities=33% Similarity=0.411 Sum_probs=51.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 1112258884678888773211147775058888776530588999999999999
Q gi|254780788|r 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 (526)
Q Consensus 361 ~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~ 415 (526)
-+.+--+++..++..|..+|+.|++++|..++++|..|.|++++.|..|+-+|++
T Consensus 8 dL~~leG~~~~~~~~L~e~gI~t~edLAdls~dEL~ei~~i~ee~A~~lIM~AR~ 62 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9971789899999999996997499998728999987616899999999999986
No 33
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=97.07 E-value=0.0014 Score=43.91 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=63.3
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCCC------------------CCCCCCEEEEEEEEECCCC
Q ss_conf 9998520838999998405763899957935874478748875------------------1152766999997611358
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE------------------NLRPGDRVKSYIYDVRREQ 193 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~E------------------~~~~Gdrika~i~~V~~~~ 193 (526)
.-|+..+|+++.|+|..+...+++|.+|...+.+|+....+.. .|+.||.||+-|..|+.+.
T Consensus 75 ~v~~p~~Ge~~~g~V~~v~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Gd~V~v~V~~v~~~~ 154 (172)
T 2c35_B 75 IVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred EEEECCCCCEEEEEEEEECCCEEEEEECCCEEEEEEECCCCCCCEEECCCCEEEEECCCCEEEECCCEEEEEEEEEEECC
T ss_conf 99815689799999998737749999658079887410478761475266259994047849928999999999998644
Q ss_pred CEEEEEEECCCHH
Q ss_conf 7028987159889
Q gi|254780788|r 194 RGPQVLLSRTHPQ 206 (526)
Q Consensus 194 rgpqi~lSRt~p~ 206 (526)
+..+++-|-..|.
T Consensus 155 ~~i~~ig~l~~~~ 167 (172)
T 2c35_B 155 NDIFAIGSLMDDY 167 (172)
T ss_dssp TEEEEEEECCSTT
T ss_pred CCCEEEEEECCCC
T ss_conf 7848999988999
No 34
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 2bbm_B 2bbn_B
Probab=96.96 E-value=0.0021 Score=42.61 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=62.7
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCC-----------------CCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 9985208389999984057638999579358744787488-----------------75115276699999761135870
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS-----------------RENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip-----------------~E~~~~Gdrika~i~~V~~~~rg 195 (526)
-|+..+|+++.|+|..+.+-+++|.+|..++++|+. .+| +..|+.||.||+-|..|+.+.+.
T Consensus 78 v~~p~~Ge~~~g~V~~v~~~Gifv~lg~~~i~i~~~-~l~d~~~yd~~~~~~~~~~~~~~i~iGd~VrvrV~~v~~~~~~ 156 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKH-LMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTTSEEEEEGG-GSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTE
T ss_pred EEECCCCCEEEEEEEEECCCEEEEEECCCEEEEEHH-HCCCCCCCCCCCCEEEEECCCEEECCCCEEEEEEEEEEECCCC
T ss_conf 986678989999999853646999950868998745-5677630052115378833880991799999999998706673
Q ss_pred EEEEEECCCHHH
Q ss_conf 289871598899
Q gi|254780788|r 196 PQVLLSRTHPQF 207 (526)
Q Consensus 196 pqi~lSRt~p~~ 207 (526)
.+++.|-..|.|
T Consensus 157 i~~iGtl~~~~L 168 (215)
T 2b8k_G 157 IHAIGSIKEDYL 168 (215)
T ss_dssp EEEEEECCSTTC
T ss_pred CEEEEEECCCCC
T ss_conf 389999678986
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.88 E-value=0.001 Score=44.91 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=55.0
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 66407799989999999879847889653267752123123444321124533435889999999999841225788800
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~~gWf~~e 515 (526)
.|+.++|+++..+-.|.++|++|++|+|.++.++|..+. ++.+..|..+.-.++..+.|.+..
T Consensus 647 ~L~~i~~ig~~~ar~L~~~G~~s~~~i~~~~~~~l~~v~-----------------g~g~k~a~~i~~~~~~~~~~~~~~ 709 (720)
T 2zj8_A 647 PLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIE-----------------GIGVKTVEAIFKFLGKNVKISEKP 709 (720)
T ss_dssp GGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTST-----------------TCCHHHHHHHHHHHC---------
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHCC-----------------CCCHHHHHHHHHHHCHHCCCCCCC
T ss_conf 622789999999999998799999999749988985276-----------------948999999997445005852153
Q ss_pred CC
Q ss_conf 02
Q gi|254780788|r 516 KV 517 (526)
Q Consensus 516 ~~ 517 (526)
..
T Consensus 710 ~~ 711 (720)
T 2zj8_A 710 RK 711 (720)
T ss_dssp --
T ss_pred CC
T ss_conf 30
No 36
>2waq_E DNA-directed RNA polymerase RPO7 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_E 2pmz_E 3hkz_E
Probab=96.86 E-value=0.00044 Score=47.63 Aligned_cols=73 Identities=25% Similarity=0.510 Sum_probs=60.3
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC-----------------CCCCCCCEEEEEEEEECCCCCE-
Q ss_conf 9852083899999840576389995793587447874887-----------------5115276699999761135870-
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-----------------ENLRPGDRVKSYIYDVRREQRG- 195 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~-----------------E~~~~Gdrika~i~~V~~~~rg- 195 (526)
|+..+|+++.|+|..+..-.++|.+|..+++++.++..+. ..|+.||+||+-|..|+.+..+
T Consensus 77 f~P~~Gevi~g~V~~v~~~Gifv~ig~~~~~v~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 2waq_E 77 YVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp ECCCSSCCCCEEEEEECSSEEEEBCSSSBBCEESTTBCSSSSCCCCCSSSCSCBCSSSBCCTTCEEBCEEEEEECCC---
T ss_pred EECCCCCEEEEEEEEEEECEEEEEECCCCCEEEHHHHCCCCCCCCHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCCC
T ss_conf 81558979999999886021999954866608689937776527367465999406829989999999999985787766
Q ss_pred -EEEEEECCCHH
Q ss_conf -28987159889
Q gi|254780788|r 196 -PQVLLSRTHPQ 206 (526)
Q Consensus 196 -pqi~lSRt~p~ 206 (526)
..|.+|...|.
T Consensus 157 ~~~I~~s~~~~g 168 (180)
T 2waq_E 157 LPRIALTMRQPY 168 (180)
T ss_dssp CCEEEEEBCSTT
T ss_pred CCEEEEECCCCC
T ss_conf 660899857888
No 37
>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12}
Probab=96.85 E-value=0.012 Score=37.19 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HC
Q ss_conf 1225888467888877321-11477750588887765305889999999999999999999989877542843566--40
Q gi|254780788|r 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL--CS 439 (526)
Q Consensus 363 ~e~LdVDE~iA~~LV~eGf-~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L--~~ 439 (526)
|+.-++.+.+.+.|++.|| +++.++.....++|..++||.+..+..|.+.-.. .+......=| +.
T Consensus 449 mdI~GlG~~~i~~L~~~G~i~~~~Di~~L~~~~l~~l~gfg~Ksa~nL~~sIe~------------sk~~~l~r~L~ALG 516 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEK------------AKETTFARFLYALG 516 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHH------------HTBCCHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------HCCCCHHHHHHHCC
T ss_conf 377772489999873657868889996501777766541142678999999987------------50698999998643
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCC
Q ss_conf 77999899999998798478896532677521231
Q gi|254780788|r 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 (526)
Q Consensus 440 l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~ 474 (526)
++++....+-.|+. ...+++.|...+.++|..+.
T Consensus 517 I~~vG~~~ak~La~-~f~~l~~l~~as~eeL~~I~ 550 (671)
T 2owo_A 517 IREVGEATAAGLAA-YFGTLEALEAASIEELQKVP 550 (671)
T ss_dssp CTTCCHHHHHHHHH-HHCSHHHHHTCCHHHHTTST
T ss_pred CCCCCHHHHHHHHH-HCCCHHHHHCCCHHHHHCCC
T ss_conf 77754778999988-62999998738999996449
No 38
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=96.84 E-value=0.0026 Score=41.94 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=56.3
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHHHCC---------CCCCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 9985208389999984057638999579-35874478748---------8751152766999997611358702898715
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETI---------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~e~i---------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSR 202 (526)
.|..++|++|.|.|..+....+.||+|. ..|+||..+.- .+..|++||-|.|-|..+... ..+.||-
T Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~s~~~a~L~~~~~~~~~~~~~~~~r~~l~~GDlV~ArV~~v~~~---~~~~Ls~ 145 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS---IDPVLSV 145 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT---EEEEEEC
T ss_pred CCCCCCCCEEEEEEEEEECCEEEEECCCCCCEEEEHHHCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCC---CCEEEEE
T ss_conf 6678899989999998616679998489841583667735754011165896479999999999995588---8669985
Q ss_pred CCH
Q ss_conf 988
Q gi|254780788|r 203 THP 205 (526)
Q Consensus 203 t~p 205 (526)
..+
T Consensus 146 ~~~ 148 (251)
T 2je6_I 146 KGK 148 (251)
T ss_dssp CST
T ss_pred CCC
T ss_conf 378
No 39
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.83 E-value=0.00069 Score=46.25 Aligned_cols=197 Identities=15% Similarity=0.218 Sum_probs=87.8
Q ss_pred EECCCCCEE--EEEEEECCCCCCCEEEEECCCCHH------HHHHHHHHCCCCEEEEECC-----CCHHHHHHHHC---C
Q ss_conf 631677503--499994089988127655488621------7889986277826799559-----87899999762---8
Q gi|254780788|r 229 VSRDPGSRA--KLAVFSSDSSIDPVGACVGMRGSR------VQAVVTELRDEKIDIVVWS-----PDSATFVINAL---R 292 (526)
Q Consensus 229 iaR~pG~Rs--KIAV~s~d~~iDpVGAcVG~rGsR------iq~I~~EL~gEkIDii~ws-----~d~~~fi~nAl---~ 292 (526)
.+-+||.|+ |+||.+.+.++=-.+. +.+-+.+ ...+.+=+..-++++|--. -....|+..-+ .
T Consensus 332 lg~dPg~r~g~k~a~vD~~G~vld~~~-iyp~~~~~~~~~a~~~l~~li~~~~~~vIaIGngtasrete~~v~~li~~~~ 410 (785)
T 3bzc_A 332 LGLDPGLRTGVKVAVVDATGKLLDTAT-VYPHAPKNQWDQTLAVLAALCAKHQVELIAIGNGTASRETDKLAGELIKKYP 410 (785)
T ss_dssp EEEECCSSSCEEEEEECTTSCEEEEEE-ECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHHHCG
T ss_pred EEECCCCCCCEEEEEECCCCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 554789877359999989998787679-7468974235999999999999829968997686387899999999998565
Q ss_pred CCCCCEEEECCCCC-------EEEEEECCCCCC----CCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCC
Q ss_conf 66542489875678-------799998534221----1025442789999986167457855220011010012210001
Q gi|254780788|r 293 PAIVTKVVLDEDVG-------RIEVIVPKEQLS----LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 (526)
Q Consensus 293 PA~v~~v~~de~~~-------~~~v~v~~~qls----~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~ 361 (526)
+-.|.-++++|..- .+.--.|+-+.+ .+|||+=||- .+.|..-.+.-++..++.. ... ...
T Consensus 411 ~~~v~~~~V~E~gAsvYsaS~~A~~EfPdld~~~R~AVSIaRrlQDP--LaElvkidp~sigvg~yQh----dv~--q~~ 482 (785)
T 3bzc_A 411 GMKLTKIMVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDP--LAELVKIEPKSIGVGQYQH----DVS--QLK 482 (785)
T ss_dssp GGCCEEEEECCHHHHHHHHSHHHHHHCTTSCHHHHHHHHHHHHHHCH--HHHHTTSCGGGGTCSTTGG----GSC--HHH
T ss_pred CCCCEEEEECCHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCH--HHHHHHCCHHHCCCCCCCC----CCC--HHH
T ss_conf 77864898332026776438998855726880156888778763086--9999722964341127644----137--999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 11225888467888877321114777505888877653058899999999999999999999898775428435664077
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIP 441 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~ 441 (526)
|.+.|+ ..+-...-.-|. +|-.|+..=|.-+.|+..-.|..|...-. .-.......+|+.++
T Consensus 483 L~~~L~--~vv~~~VN~VGV----DiN~As~~lL~~VsGLgprkA~~iv~~r~------------~~g~f~~R~~L~~v~ 544 (785)
T 3bzc_A 483 LARSLD--AVVEDCVNAVGV----DVNTASAALLARISGLNSTLAQNIVAHRD------------ANGAFRTRDELKKVS 544 (785)
T ss_dssp HHHHHH--HHHHHHHHHHCE----ETTTCCHHHHHTSTTCCHHHHHHHHHHHH------------HHCCCSSGGGGGGST
T ss_pred HHHHHH--HHHHHHHHCCCE----EHHHHHHHHHHCCCCCCHHHHHHHHHHHH------------HCCCCCCHHHHHHCC
T ss_conf 999999--999978404556----18861477753257878899999999999------------579957799997367
Q ss_pred CCCHHHHHHHH
Q ss_conf 99989999999
Q gi|254780788|r 442 GIDSKIKVALG 452 (526)
Q Consensus 442 gl~~~~~~~L~ 452 (526)
+|++......+
T Consensus 545 ~lG~k~F~q~A 555 (785)
T 3bzc_A 545 RLGEKTFEQAA 555 (785)
T ss_dssp TCCHHHHHHHG
T ss_pred CCCHHHHHHCC
T ss_conf 86602176525
No 40
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=96.62 E-value=0.0015 Score=43.82 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=64.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-------------------HHHHHHHHCCCCCCCEE-----EECCC
Q ss_conf 8127655488621788998627782679955987-------------------89999976286654248-----98756
Q gi|254780788|r 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD-------------------SATFVINALRPAIVTKV-----VLDED 304 (526)
Q Consensus 249 DpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d-------------------~~~fi~nAl~PA~v~~v-----~~de~ 304 (526)
+-+|..+|.+|+.|+.+.++- |=+|.+...+++ ...+|.+.+........ .....
T Consensus 11 ~~vg~iIGk~G~~I~~i~~~t-g~~i~~~~~~~~~~~~~~~v~I~G~~~~v~~a~~~i~~~~~~~~~~~~~~~~~~~~~~ 89 (164)
T 2jvz_A 11 GKAGLVIGKGGETIKQLQERA-GVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRI 89 (164)
T ss_dssp TCHHHHTCTTTHHHHHHHHTS-CSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSC
T ss_pred HHCCEEECCCCHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 670746889987899999997-9859982576656666406998388899999999887666542122332123556655
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 7879999853422110254427899999861674578552
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
...+.+.||.++.+..|||+|+|+|--...||-+|++...
T Consensus 90 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~ 129 (164)
T 2jvz_A 90 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD 129 (164)
T ss_dssp SSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC
T ss_pred CCEEEECCCHHHCEEEECCCCHHHHHHHHHHCCEEEECCC
T ss_conf 4113312665445158889966599999964976886388
No 41
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.60 E-value=0.0039 Score=40.65 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 22588846788887732111477750588887765305889999999999999
Q gi|254780788|r 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 (526)
Q Consensus 364 e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~ 416 (526)
...+|....++.|..+||.|+++|+++++.+|.++.|+.+..|++++..|+..
T Consensus 87 ~~~gi~~~~i~kL~~aG~~t~~~i~~~~~~~L~~~~g~s~~~a~ki~~~a~k~ 139 (400)
T 3lda_A 87 QVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARL 139 (400)
T ss_dssp CCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 86699989999999869851999971799999872399999999999999986
No 42
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein/RNA complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.57 E-value=0.0014 Score=43.88 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-------------HHHHHHHHCCCC----------C----C-----
Q ss_conf 8127655488621788998627782679955987-------------899999762866----------5----4-----
Q gi|254780788|r 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD-------------SATFVINALRPA----------I----V----- 296 (526)
Q Consensus 249 DpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d-------------~~~fi~nAl~PA----------~----v----- 296 (526)
+-+|..||.+|+.|+.+.++. |-+|++-.=++. ...-+.+|.... . .
T Consensus 15 ~~~g~IIGk~G~~Ik~i~~~t-g~~I~~~~~~~~~~~~~~~~~~i~G~~~~v~~a~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (178)
T 2anr_A 15 YAAGSIIGKGGQTIVQLQKET-GATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQ 93 (178)
T ss_dssp HHHHHHHCGGGHHHHHHHHHH-CCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-----------
T ss_pred HHHCEEECCCCHHHHHHHHHH-CCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 772417998987799999987-9838744434678875147874034567799999999998765441012334555333
Q ss_pred -CEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf -2489875678799998534221102544278999998616745785522
Q gi|254780788|r 297 -TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 297 -~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
.............+.||.++...-|||+|+|++-..+.||-+|++....
T Consensus 94 ~~~~~~~~~~~~~~i~Vp~~~~~~iIG~~G~~I~~i~~~tg~~I~i~~~~ 143 (178)
T 2anr_A 94 PQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP 143 (178)
T ss_dssp ------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC
T ss_pred CCCCCCCCCCEEEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEEECCC
T ss_conf 33344556632699998978878278899859999999869889992588
No 43
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.43 E-value=0.058 Score=32.10 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 11225888467888877321114777505888877653058899999999999999
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
++...+|....|..|..+||.|+++|+.++.++|..++||.+.+|+.++.-+..-+
T Consensus 648 L~~i~~ig~~~ar~L~~~G~~s~~~i~~~~~~~l~~v~g~g~k~a~~i~~~~~~~~ 703 (720)
T 2zj8_A 648 LMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNV 703 (720)
T ss_dssp GTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC---
T ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCHHC
T ss_conf 22789999999999998799999999749988985276948999999997445005
No 44
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.39 E-value=0.008 Score=38.39 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=80.9
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHH-------CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 998520838999998405763899957-9358744787-------48875115276699999761135870289871598
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-------TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e-------~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~ 204 (526)
.|..++|++|.|.|.++..+.+.||++ ...|+||..+ .-|++.|++||-|.|-|..+... ..+.||-
T Consensus 52 rY~P~vGDiVIG~V~~i~~~~~~VdI~s~~~a~L~~~~~~~~~~~~~~~~~l~~GDlI~ArV~~v~~~---~~~~L~~-- 126 (229)
T 2ba0_A 52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK---MKVTLTM-- 126 (229)
T ss_dssp SCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT---CCEEEEC--
T ss_pred CCCCCCCCEEEEEEEEECCCEEEEEECCCCCEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEECCC---CCEEEEE--
T ss_conf 64688999999999787075599982897536977455766320125254257899999999996588---8569973--
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 89999999976677755808785663167750349999408998812765548862178899862778267995598789
Q gi|254780788|r 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 (526)
Q Consensus 205 p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~ 284 (526)
|+++.+. |
T Consensus 127 --------------------------~~~~~gk-------------------------------l--------------- 134 (229)
T 2ba0_A 127 --------------------------KDRICRP-------------------------------I--------------- 134 (229)
T ss_dssp --------------------------CSSSCEE-------------------------------E---------------
T ss_pred --------------------------CCCCCCC-------------------------------C---------------
T ss_conf --------------------------4656786-------------------------------5---------------
Q ss_pred HHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf 999976286654248987567879999853422110254427899999861674578
Q gi|254780788|r 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 (526)
Q Consensus 285 ~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi 341 (526)
..-+.+-|+.......||+++.-+.+..+-|+++|=+
T Consensus 135 --------------------~~G~l~~v~~~~v~rli~~~~~~l~~l~~~~~~ei~v 171 (229)
T 2ba0_A 135 --------------------RFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV 171 (229)
T ss_dssp --------------------SSSEEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE
T ss_pred --------------------CCEEEEEECCCCCCCEECCCCCHHHHHCCCCCEEEEE
T ss_conf --------------------7679999804446624516740645522366869999
No 45
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.30 E-value=0.0065 Score=39.04 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=49.0
Q ss_pred HHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 640779998999999987984788965326775212312344432112453343588999999999984122
Q gi|254780788|r 437 LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 (526)
Q Consensus 437 L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~ 508 (526)
+++--+++..++..|...|..|+|++|..+.+||..|. |++++.|+.|+..|+..
T Consensus 8 F~e~LdvDe~iA~lLv~EGF~siEeIAy~~~~eL~~Ie-----------------gfDee~a~eL~~RA~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE-----------------GLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTST-----------------TCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHCC-----------------CCCHHHHHHHHHHHHHH
T ss_conf 99984863999999998655979998759999997631-----------------55899999999999999
No 46
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.30 E-value=0.002 Score=42.76 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCC----------------CCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 985208389999984057638999579358744787488----------------7511527669999976113587028
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS----------------RENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip----------------~E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
|+..+|+++.|+|..+....+++.+|...++.|.....+ +..|+.||.||+-|..|+.+.+.-+
T Consensus 80 f~P~~ge~~~g~V~~i~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~v~~~~~~i~ 159 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIF 159 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEE
T ss_pred EECCCCCEEEEEEEEECCCEEEEEECCCEEEEEEECCCCCEEECHHHCEEEECCCCEEECCCCEEEEEEEEEECCCCCCE
T ss_conf 81578989999999982666999950879999601167751895357468863588099899999999999970537728
Q ss_pred EEEECCCHHH
Q ss_conf 9871598899
Q gi|254780788|r 198 VLLSRTHPQF 207 (526)
Q Consensus 198 i~lSRt~p~~ 207 (526)
++.|-..|.|
T Consensus 160 ~igsl~~~~l 169 (172)
T 3h0g_G 160 AIATMKEDYL 169 (172)
T ss_dssp EEEECCSTTC
T ss_pred EEEEECCCCC
T ss_conf 9999789877
No 47
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.24 E-value=0.01 Score=37.68 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4356640779998999999987984788965326775212312344432112453343588999999999984122
Q gi|254780788|r 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 (526)
Q Consensus 433 ~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~ 508 (526)
+-+.|.. .|++...+.+|.++|+.|++++|..+..+|..+. ++++..|.+++..||+-
T Consensus 82 ~~~~l~~-~gi~~~~i~kL~~aG~~t~~~i~~~~~~~L~~~~-----------------g~s~~~a~ki~~~a~k~ 139 (400)
T 3lda_A 82 PIEKLQV-NGITMADVKKLRESGLHTAEAVAYAPRKDLLEIK-----------------GISEAKADKLLNEAARL 139 (400)
T ss_dssp BGGGGCC-TTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTST-----------------TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHH-CCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHC-----------------CCCHHHHHHHHHHHHHH
T ss_conf 6999986-6999899999998698519999717999998723-----------------99999999999999986
No 48
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, cytoplasm, DNA-binding, nucleus, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Homo sapiens}
Probab=96.20 E-value=0.0024 Score=42.24 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=64.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC--------HHHHHHHHCCC------------CCCCEEEECCCCCEE
Q ss_conf 8127655488621788998627782679955987--------89999976286------------654248987567879
Q gi|254780788|r 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD--------SATFVINALRP------------AIVTKVVLDEDVGRI 308 (526)
Q Consensus 249 DpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d--------~~~fi~nAl~P------------A~v~~v~~de~~~~~ 308 (526)
+-||..+|.+|+.|+.|.++- |=+|++-.-+.. +..=+.+|+.. ..-. ....+...++
T Consensus 14 ~~vg~vIGk~G~~Ik~I~~~t-g~~I~v~~~~~~e~~v~i~G~~~~v~~A~~~I~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (160)
T 2jzx_A 14 KEVGSIIGKKGESVKKMREES-GARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNS-TAASRPPVTL 91 (160)
T ss_dssp HHHHHHHCGGGHHHHHHHHHH-CSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCSS-SCCCCCSEEE
T ss_pred HHHCEEECCCCHHHHHHHHHH-CCEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEE
T ss_conf 671223788877899999987-98599656788765799957879999999988888764201222234-3356662599
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 999853422110254427899999861674578552
Q gi|254780788|r 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 309 ~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
.+.||..+...-|||+|.|++--.+.||++|.+...
T Consensus 92 ~i~vp~~~~g~iIG~~G~~Ik~I~~~tg~~i~i~~~ 127 (160)
T 2jzx_A 92 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 127 (160)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC
T ss_pred EEECCHHHEEEEECCCCHHHHHHHHHHCCEEEECCC
T ss_conf 996685771222348985899999987996997887
No 49
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=96.20 E-value=0.0082 Score=38.33 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=15.6
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 6640779998999999987984788965326775212
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
+|.+|+|+++.++.+|.++||.|++||+.++..||..
T Consensus 4 ~l~~~~g~~~~~~~kL~~ag~~t~~~l~~~~~~~l~~ 40 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTD 40 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHT
T ss_pred CHHCCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHH
T ss_conf 3002799899999999986996099997399999998
No 50
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.15 E-value=0.0066 Score=39.02 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=52.2
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEEC---------CCEEEEEHHHCC--------CCCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 98520838999998405763899957---------935874478748--------8751152766999997611358702
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETI--------SRENLRPGDRVKSYIYDVRREQRGP 196 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg---------~~ea~Lp~~e~i--------p~E~~~~Gdrika~i~~V~~~~rgp 196 (526)
|..++|++|.|.|.++....+.|++. ...|+++..+.- ..+.|++||-|+|-|..+... .+
T Consensus 77 ~~P~vGDiViGrV~~v~~~~a~V~I~~v~~~~l~~~~~g~l~~~dvr~~e~d~~~m~d~fr~GDIVrAkVis~~d~--~~ 154 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDA--QS 154 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETT--TT
T ss_pred CCCCCCCEEEEEEEEECCCEEEEEEEEECCEECCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEEECCCC--CC
T ss_conf 4798899999999998478799999998787257650123678884605452555875078998899999988688--66
Q ss_pred EEEEECCCHH
Q ss_conf 8987159889
Q gi|254780788|r 197 QVLLSRTHPQ 206 (526)
Q Consensus 197 qi~lSRt~p~ 206 (526)
.+.||-..++
T Consensus 155 ~~~LSt~~~~ 164 (209)
T 2nn6_I 155 NYLLTTAENE 164 (209)
T ss_dssp EEEEECCSSS
T ss_pred CEEEEECCCC
T ss_conf 6899951898
No 51
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.13 E-value=0.02 Score=35.41 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHHHC-----CCCCCCCCCCEEEEEEEEECCCCCEEE--------
Q ss_conf 99985208389999984057638999579-3587447874-----887511527669999976113587028--------
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDET-----ISRENLRPGDRVKSYIYDVRREQRGPQ-------- 197 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~e~-----ip~E~~~~Gdrika~i~~V~~~~rgpq-------- 197 (526)
..|..++|++|.|+|..+..+.+.||+|. ..|+||...- --+.+|++||-|-|-|..+.++.. |.
T Consensus 121 kRY~P~~GD~VIGiV~~~~~d~w~VDIgs~~~A~L~~~aF~gatkrnRp~L~vGDlVyArV~~v~~d~e-~eLsCvd~~~ 199 (289)
T 2nn6_G 121 KRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDME-PEMVCIDSCG 199 (289)
T ss_dssp SSCCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSC-CEEECSBTTT
T ss_pred CCCCCCCCCEEEEEEEEECCCEEEEECCCCCCEEECHHHCCCHHHHCCCCCCCCCEEEEEEEEECCCCC-EEEEEECCCC
T ss_conf 766899999999999897186289974897533862343775344356558999889999999458996-6899754777
Q ss_pred -----------EEEECCCHHHHHHHHH
Q ss_conf -----------9871598899999999
Q gi|254780788|r 198 -----------VLLSRTHPQFMVKLFH 213 (526)
Q Consensus 198 -----------i~lSRt~p~~l~~Lf~ 213 (526)
=+|-+.+|.++++|..
T Consensus 200 k~~g~G~L~~~G~l~~Vs~~lvrrLl~ 226 (289)
T 2nn6_G 200 RANGMGVIGQDGLLFKVTLGLIRKLLA 226 (289)
T ss_dssp TBCCCCSCCSSCEEECCCHHHHHHHHC
T ss_pred CCCCCCCCCCCEEEEEECCHHCCCEEC
T ss_conf 424666134787999987343200204
No 52
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.08 E-value=0.0058 Score=39.45 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=60.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHH----------HHH----------HHHCCCCCC------------
Q ss_conf 812765548862178899862778267995598789----------999----------976286654------------
Q gi|254780788|r 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA----------TFV----------INALRPAIV------------ 296 (526)
Q Consensus 249 DpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~----------~fi----------~nAl~PA~v------------ 296 (526)
+-+|..||.+|+.|+.+.++- |=+|++-.-..++. .-+ .+...+...
T Consensus 12 ~~vG~IIGk~G~~Ik~i~~~t-g~~I~i~~~~~~~~~~~v~i~g~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (174)
T 1j4w_A 12 FAVGIVIGRNGEMIKKIQNDA-GVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGR 90 (174)
T ss_dssp HHHHHHHCGGGHHHHHHHHHH-CCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHCEEECCCCHHHHHHHHHH-CCCEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 450357999997999999987-9937863467888851564047757788889989988876652023454212233333
Q ss_pred ----CEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf ----2489875678799998534221102544278999998616745785522
Q gi|254780788|r 297 ----TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 297 ----~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
.............+.||.++++..||++|.|+|-....||-+|+|....
T Consensus 91 ~~~~~~~~~~~~~~~~~i~vp~~~~~~iIG~~G~~i~~i~~~tga~I~i~~~~ 143 (174)
T 1j4w_A 91 GQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP 143 (174)
T ss_dssp -------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC
T ss_pred CCCCCCCCCCCCCCEEEEEECHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 33434567766551299998878765736999837999999709989967888
No 53
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.07 E-value=0.031 Score=34.03 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEE-EEHHH-----CCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 9985208389999984057638999579-3587-44787-----48875115276699999761135
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGV-IRRDE-----TISRENLRPGDRVKSYIYDVRRE 192 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~-Lp~~e-----~ip~E~~~~Gdrika~i~~V~~~ 192 (526)
.|..++|++|-|+|..+..+.+.||++. ..+. ||... +-.+..|++||-+-|-|..|...
T Consensus 2 RY~P~~gD~VIG~V~~~~~~~w~vdI~s~~~~~~l~~~~f~~~~kr~r~~l~~GDli~arV~~v~~~ 68 (175)
T 2ja9_A 2 RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKE 68 (175)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTT
T ss_pred CCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf 8769998999999999708839999188425430665546641231553488998899999993378
No 54
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.02 E-value=0.032 Score=33.95 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=88.8
Q ss_pred HHCCCEEEEEEEECCCC--EEEEEEC-CCEEEEEHHHCCC---------------CCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 52083899999840576--3899957-9358744787488---------------7511527669999976113587028
Q gi|254780788|r 136 DKVGEIISGTVKRVEYG--NVIVDLG-NSDGVIRRDETIS---------------RENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~--~iiVdlg-~~ea~Lp~~e~ip---------------~E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
..+|.|..|.|.++.++ ..+||+| +-.|+||.++..| .+.+++||.+-+=|..=-...|||.
T Consensus 43 ~~vGnIY~GrV~~v~pgl~AAFVdiG~~k~gFL~~~di~~~~~~~~~~~~~~~~I~~~l~~Gq~ilVQV~ke~~~~Kg~~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEHHHCCHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 88798899999423798866999618997148886884845415552224565554407899989999724676777765
Q ss_pred EE---------------------EECCCH-----HHHHHHHHHHHHHHHCCEEEEEEEECCCCCEE-------------E
Q ss_conf 98---------------------715988-----99999999766777558087856631677503-------------4
Q gi|254780788|r 198 VL---------------------LSRTHP-----QFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA-------------K 238 (526)
Q Consensus 198 i~---------------------lSRt~p-----~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~Rs-------------K 238 (526)
+. .||... .+.+.|-....|+= -|+ -++..|-....-. .
T Consensus 123 lT~~Isl~GrylVl~P~~~~i~~sski~~~~er~~l~~~l~~~~~pe~-~G~-IiRT~a~~~~~~~l~~d~~~L~~~w~~ 200 (517)
T 2bx2_L 123 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG-MGL-IVRTAGVGKSAEALQWDLSFRLKHWEA 200 (517)
T ss_dssp EESSCCEECSSEEEETTCTTCCEECTTCC------HHHHHTTSCCCTT-CEE-EECGGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EECEEEECCCCEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCC-CEE-EEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 524064078746874578861115044775889999999986358988-438-998755699999999999999999988
Q ss_pred EEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 999940899881276554886217889986277826799559878
Q gi|254780788|r 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 (526)
Q Consensus 239 IAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~ 283 (526)
|.-.+ .--+..+|+-..++-+..+.+.+-++.++.|.-++..
T Consensus 201 i~~~~---~~~~~P~ll~~~~~~~~r~lrd~~~~~~~~i~vd~~~ 242 (517)
T 2bx2_L 201 IKKAA---ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 242 (517)
T ss_dssp HHHHH---HTSCSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHH
T ss_pred HHHHH---CCCCCCEEEECCCCHHHHHHHHHCCHHHHCCCCCCHH
T ss_conf 88754---2489863786287499999998636033223367688
No 55
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=95.98 E-value=0.0053 Score=39.69 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHCCCEEEEEEEECCCCEEEEEECC-----------CEEEEEHHHCCC------CCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 85208389999984057638999579-----------358744787488------7511527669999976113587028
Q gi|254780788|r 135 KDKVGEIISGTVKRVEYGNVIVDLGN-----------SDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 135 ~~r~Geiv~G~V~r~e~~~iiVdlg~-----------~ea~Lp~~e~ip------~E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
..+.|++|.|.|.++....++|++.. ..|+++.++.-. .+.|++||-|+|-+.. +.
T Consensus 54 ~p~~GDiViG~V~~v~~~~a~v~I~~v~g~~~~~~~~~~g~i~~s~v~~~~v~~i~d~~~~GDiIrAkVi~-------~~ 126 (179)
T 3m7n_A 54 EIVKGDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-------DN 126 (179)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-------TT
T ss_pred CCCCCCEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEC-------CC
T ss_conf 78889999999999838709999998708756665463036892536345566688741799889999936-------85
Q ss_pred EEEECCCHH
Q ss_conf 987159889
Q gi|254780788|r 198 VLLSRTHPQ 206 (526)
Q Consensus 198 i~lSRt~p~ 206 (526)
+.||-..|+
T Consensus 127 ~~LSt~~~~ 135 (179)
T 3m7n_A 127 LRLSTKEEE 135 (179)
T ss_dssp TEEECCSTT
T ss_pred EEEEECCCC
T ss_conf 798862888
No 56
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=95.94 E-value=0.0027 Score=41.89 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 077999899999998798478896532677521231234443211245334358899999999998412257
Q gi|254780788|r 439 SIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 (526)
Q Consensus 439 ~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~~g 510 (526)
...|+++..+.+|.++|+.|++++|..+..+|..+. |+++..|.++|-.||+.++
T Consensus 29 ~~~Gvg~~~i~KL~~aG~~Tv~~Ia~~t~~eL~~i~-----------------Gi~e~~A~KIi~aark~~~ 83 (114)
T 1b22_A 29 EQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIK-----------------GISEAKADKILAEAAKLVP 83 (114)
T ss_dssp HHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTT-----------------TCSTTHHHHHHHHHHHHSC
T ss_pred HHCCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHCC-----------------CCCHHHHHHHHHHHHHHCC
T ss_conf 768999999999999697449999848999997666-----------------9889999999999998747
No 57
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=95.73 E-value=0.0014 Score=43.99 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 1000111225888467888877321114777505888877653058899999999999
Q gi|254780788|r 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 357 ~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~ 414 (526)
+....+.+.-+|.+.++..|++.||.|+++|..++.++|+.++||.+..|..|+..-.
T Consensus 12 ~~~~~l~~i~gvG~~~~~~l~~~g~~~~~~i~~~~~~~L~~~~g~g~k~a~~i~~~i~ 69 (241)
T 1vq8_Y 12 EEYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8674325889989999999997689999999869999997468957999999999986
No 58
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.66 E-value=0.0015 Score=43.71 Aligned_cols=37 Identities=32% Similarity=0.420 Sum_probs=14.3
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 6640779998999999987984788965326775212
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
+|.+|+|+++.++.+|.++||+|++|||.++.+||..
T Consensus 13 ~l~~l~gi~~~~~~kL~~~g~~t~~~l~~~~~~~L~~ 49 (324)
T 2z43_A 13 TINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSV 49 (324)
T ss_dssp -------------------------------------
T ss_pred CHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHH
T ss_conf 6532799799999999986996199997189999998
No 59
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=95.58 E-value=0.004 Score=40.58 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCC-----------CHHHHHHHHCCCC------CCCEEEECCCCCEEEE
Q ss_conf 8812765548862178899862778267995598-----------7899999762866------5424898756787999
Q gi|254780788|r 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP-----------DSATFVINALRPA------IVTKVVLDEDVGRIEV 310 (526)
Q Consensus 248 iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~-----------d~~~fi~nAl~PA------~v~~v~~de~~~~~~v 310 (526)
-+-+|+.+|.+|..|+.|.++- |=+|++-.-+. .....+..|.... ......-........+
T Consensus 11 ~~~vg~vIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (163)
T 3krm_A 11 AQAVGAIIGKKGQHIKQLSRFA-SASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHI 89 (163)
T ss_dssp GGGHHHHHCGGGHHHHHHHHHH-TCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCSSCCCCEEEEE
T ss_pred HHHHCEEECCCCHHHHHHHHHH-CCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5770511899987799999985-980899972157764136664034124577887530231000136765311211013
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 9853422110254427899999861674578552
Q gi|254780788|r 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 311 ~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
.||....+.-||++|.|++-..+.||-+|+|...
T Consensus 90 ~vp~~~~~~iIG~~G~~i~~I~~~tg~~I~i~~~ 123 (163)
T 3krm_A 90 RVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD 123 (163)
T ss_dssp EEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT
T ss_pred CCCHHHHEEEECCCCCHHHHHHHHCCCEEEECCC
T ss_conf 5965540167889980189998528969998678
No 60
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.53 E-value=0.00029 Score=48.99 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCC---------EEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCC
Q ss_conf 8127655488621788998627782---------6799559878999997628665424898756787999985342211
Q gi|254780788|r 249 DPVGACVGMRGSRVQAVVTELRDEK---------IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 (526)
Q Consensus 249 DpVGAcVG~rGsRiq~I~~EL~gEk---------IDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~ 319 (526)
+-+|.++|.+|+.|+.|.++.+-.. +-|.-.+.+...-....+. .....+.||......
T Consensus 13 ~~vg~iIGk~G~~Ik~i~~~tg~~~~~~~~~~~~~~I~g~~~~~v~~~~~~~~------------~~~~~i~Vp~~~~g~ 80 (144)
T 2qnd_A 13 DLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLE------------FAEDVIQVPRNLVGK 80 (144)
T ss_dssp GGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHC------------EEEEEEEEEGGGHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHHHCC------------CEEEEECCCHHHHCC
T ss_conf 88735579562889999997199447615888725997487888788887423------------414775157777343
Q ss_pred CCCCCHHHHHHHHHHHCC-EEEEEECCCH
Q ss_conf 025442789999986167-4578552200
Q gi|254780788|r 320 AIGRRGQNVRLASQLTGW-TIDIITEEED 347 (526)
Q Consensus 320 AIGk~GqNvrLas~Ltg~-~idi~~~~~~ 347 (526)
.||++|.|+|--..-||- .+-+....+.
T Consensus 81 iIG~~G~~I~~I~~~tG~~~i~i~~~~~~ 109 (144)
T 2qnd_A 81 VIGKNGKLIQEIVDKSGVVRVRIEAENEK 109 (144)
T ss_dssp HHCGGGHHHHHHHHHHTCSEEEEEEECTT
T ss_pred CCCCCCHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 02556426999999769869996588888
No 61
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.23 E-value=0.018 Score=35.89 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 1000111225888467888877321114777505888877653058899999999
Q gi|254780788|r 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 357 ~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
.....|...-+|.+..|..|... |.|++.|..++.++|.+++|+.+..|..|.+
T Consensus 16 ~~~~~L~~I~gIG~~~a~~L~~~-Fgsl~~i~~As~eeL~~i~GiG~~~A~~I~~ 69 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFD 69 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99998758997599999999999-4888999998787772689969999999999
No 62
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.17 E-value=0.18 Score=28.49 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=44.1
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 6640779998999999987984788965326775212312344432112453343588999999999984122
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~ 508 (526)
+|+.++|++...+-+|.++||+|++|+| .+.+++..+ ++...|+++|-+||.-
T Consensus 658 ~L~~i~~v~~~~ar~L~~~g~~s~~~i~-~~~~~~~~~-------------------~~~~~~~~i~~~~~~~ 710 (715)
T 2va8_A 658 ELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNL-------------------LGQKLGEKVVQEAARL 710 (715)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHH-------------------HCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCHHHHH-CCHHHHHHH-------------------HCHHHHHHHHHHHHHH
T ss_conf 7738899999999999987999999996-699999988-------------------6878999999999998
No 63
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.92 E-value=0.023 Score=35.01 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 1112258884678888773211147775058888776530588999999999
Q gi|254780788|r 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 (526)
Q Consensus 361 ~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~r 412 (526)
.|-+..+|.+..++.|... |.|++.|..++.++|.+++|+.+.+|..|.+-
T Consensus 25 ~L~~IpGIG~k~ak~Ll~~-F~si~~i~~As~eeL~~v~GIg~~~A~~I~~~ 75 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH-HCCHHHHHHHCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 2656999329999999999-29949998837999980799899999999999
No 64
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=94.89 E-value=0.21 Score=27.95 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=20.7
Q ss_pred CCEEEEEEEEE-------------CCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 76699999761-------------135870289871598899999999
Q gi|254780788|r 179 GDRVKSYIYDV-------------RREQRGPQVLLSRTHPQFMVKLFH 213 (526)
Q Consensus 179 Gdrika~i~~V-------------~~~~rgpqi~lSRt~p~~l~~Lf~ 213 (526)
.+.++|++..= +...-..+|+.|...-.++..++.
T Consensus 246 ~~~idAVlITHaH~DHiG~LP~L~~~g~~~~PIY~T~~T~~L~~~~~~ 293 (651)
T 3af5_A 246 EGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQK 293 (651)
T ss_dssp TTCCCEEECSCSSHHHHTTHHHHHHTTCCCSCEEECHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCHHHHCCHHHHHHHCCCCCCEECCHHHHHHHHHHHH
T ss_conf 565568997889878868688999737888877667899999999999
No 65
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.038 Score=33.41 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCCC----------------CC----CCCCCCEEEEEEEEECC
Q ss_conf 998520838999998405763899957-9358744787488----------------75----11527669999976113
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS----------------RE----NLRPGDRVKSYIYDVRR 191 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~ip----------------~E----~~~~Gdrika~i~~V~~ 191 (526)
-|+..+||++.|+|..+..-.++|.++ -.++++-..++.| ++ .|+.||.||+=|..|.-
T Consensus 76 vf~P~~gev~~g~v~~~~~~G~fV~l~~~~~~i~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~Gd~Vr~rV~~v~~ 155 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred EECCCCCCEEEEEEEEECCCEEEEECCCCCCEEEECHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEEEEEEEEE
T ss_conf 60078998999999684465189982588561998666779861313434137860377566398689989999999996
Q ss_pred CC
Q ss_conf 58
Q gi|254780788|r 192 EQ 193 (526)
Q Consensus 192 ~~ 193 (526)
..
T Consensus 156 ~d 157 (218)
T 2ckz_B 156 VD 157 (218)
T ss_dssp CC
T ss_pred EC
T ss_conf 33
No 66
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis}
Probab=94.72 E-value=0.045 Score=32.86 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 01221000111225888467888877321114777505888877653058899999999999
Q gi|254780788|r 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 353 ~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~ 414 (526)
.+........++.|+++--....|..+|+.|+.++...+.++|..+++|......|+++.-.
T Consensus 8 ~~~~~~L~~~I~~L~LS~R~~n~L~~~gI~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~ 69 (79)
T 3gfk_B 8 DQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 69 (79)
T ss_dssp SSCCCGGGCBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 24678854959984798999999989289679999868899997578986737999999999
No 67
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.65 E-value=0.04 Score=33.30 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 11225888467888877321114777505888877653058899999999
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
+....+|.+..|..|+.. |.|++.|..++.++|..++|+.+.+|..|..
T Consensus 16 L~~IpgIG~~~a~~L~~~-F~s~~~i~~As~eeL~~v~GIG~~~a~~i~~ 64 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 848999429999999999-6888989997899998558979999999999
No 68
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.58 E-value=0.19 Score=28.25 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEE-ECCCCCCCCC----CCCHHHHHH--HHHHHCCEEEEE
Q ss_conf 79999-8534221102----544278999--998616745785
Q gi|254780788|r 307 RIEVI-VPKEQLSLAI----GRRGQNVRL--ASQLTGWTIDII 342 (526)
Q Consensus 307 ~~~v~-v~~~qls~AI----Gk~GqNvrL--as~Ltg~~idi~ 342 (526)
++++. ||.++...|. |.+--|+.| -|+=-||+++=.
T Consensus 254 rVDl~~~~~~~~~~aLl~fTGS~~fn~~lR~~A~~kG~~Lne~ 296 (335)
T 2fmp_A 254 RIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEY 296 (335)
T ss_dssp EEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTEEECSS
T ss_pred EEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 6899977889999999985376999999999999859917441
No 69
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii OT3} PDB: 3aev_B
Probab=94.50 E-value=0.011 Score=37.38 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEE-------E----CCCCHH------HHHHHHCC---CC---------CCCE
Q ss_conf 881276554886217889986277826799-------5----598789------99997628---66---------5424
Q gi|254780788|r 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIV-------V----WSPDSA------TFVINALR---PA---------IVTK 298 (526)
Q Consensus 248 iDpVGAcVG~rGsRiq~I~~EL~gEkIDii-------~----ws~d~~------~fi~nAl~---PA---------~v~~ 298 (526)
-+-||+.+|-.|+.|+.+..+.+ =+|+|- . -..++. .++...+. |. ....
T Consensus 42 ~~~vG~IIGkgG~~Ik~Iqe~tg-~~I~i~~~~~~~~~~~~~~~~~~~~v~~a~~~i~~i~~~~~~~~~~~~~~~~~~~~ 120 (219)
T 2e3u_A 42 KDRIAVLIGKKGQTKKEIEKRTK-TKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLE 120 (219)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHT-EEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGSTTCEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHC-CCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
T ss_conf 78733422775389999999966-56330356786446544666557899999999999881677666640257776555
Q ss_pred E-EECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 8-9875678799998534221102544278999998616745785
Q gi|254780788|r 299 V-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 299 v-~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
+ ...+......+.||..+...-|||+|.|+|--...||-+|.|.
T Consensus 121 ~i~~~~~~~~~~~~vp~~~vG~IIGk~G~tIk~I~~~Tga~I~I~ 165 (219)
T 2e3u_A 121 IINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY 165 (219)
T ss_dssp EEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 546554445544324687740312798579999999709839977
No 70
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.11 Score=30.10 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=53.6
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEE-CCCEEEEEHHHCCC------------------CCCCCCCCEEEEEEEEECCCC
Q ss_conf 99852083899999840576389995-79358744787488------------------751152766999997611358
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------------------RENLRPGDRVKSYIYDVRREQ 193 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdl-g~~ea~Lp~~e~ip------------------~E~~~~Gdrika~i~~V~~~~ 193 (526)
-|+.+.|+++.|+|..+...++.+-+ |--.+.+|+.++-+ +..++.|+.||+-|..|..+.
T Consensus 124 VF~P~~GevLeG~V~~~s~~~I~l~V~g~fna~I~~~~lp~~~~f~~~~~~~~~~~~~~~~~~kvg~~IrFrVksv~~~~ 203 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTG 203 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCS
T ss_pred EEECCCCCEEEEEEEEECCCEEEEEEECCEEEEECHHHCCCCCEECCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEEEC
T ss_conf 98368999999999999999379999796877700778897420026777420005236565326999999999998429
Q ss_pred CEEEEEEE
Q ss_conf 70289871
Q gi|254780788|r 194 RGPQVLLS 201 (526)
Q Consensus 194 rgpqi~lS 201 (526)
+-+.|.=|
T Consensus 204 ~~lsI~Gs 211 (214)
T 2rf4_A 204 RVVSVDGT 211 (214)
T ss_dssp SSCEEEEE
T ss_pred CEEEEEEE
T ss_conf 99999999
No 71
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.37 E-value=0.03 Score=34.23 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 112258884678888773211147775058888776530588999999999
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~r 412 (526)
|...-+|....|..|... |.|++++..++.++|.+++|+....|..|++-
T Consensus 34 L~~I~gIGk~~A~~L~~~-F~Si~~l~~As~eeL~~i~GIG~~~A~~I~~~ 83 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDV 83 (91)
T ss_dssp HTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHH-HCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 646888599999999999-58829899989997557799699999999999
No 72
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=94.28 E-value=0.07 Score=31.47 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 1000111225888467888877321114777505888877653058899999999999
Q gi|254780788|r 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 357 ~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~ 414 (526)
.....-++.|+++--....|-.+|+.|+.++...+.++|..+++|.....+|+++.-+
T Consensus 5 ~~L~~~I~~L~LS~R~~N~L~~~~I~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~ 62 (73)
T 1z3e_B 5 KVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 62 (73)
T ss_dssp HHHTCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7626889884698999999989489679999868999997478986605999999999
No 73
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=94.27 E-value=0.064 Score=31.78 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHH
Q ss_conf 7888999999999986239999999--99999999
Q gi|254780788|r 3 SANRLELLQIADAVAYEKSIDRDVV--LSVMADSI 35 (526)
Q Consensus 3 s~~~~ell~vie~va~EK~I~~e~i--~~aie~Al 35 (526)
+.||.++..+++.+|.=-.+.-+.- ..|...|.
T Consensus 7 ~~~n~~i~~~l~~~A~lle~~gen~fr~rAY~rAa 41 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAA 41 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999999997499817899999999
No 74
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} PDB: 1lb2_B* 1xs9_D
Probab=94.25 E-value=0.1 Score=30.34 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 122100011122588846788887732111477750588887765305889999999999
Q gi|254780788|r 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 (526)
Q Consensus 354 e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA 413 (526)
++......-++.|+++--....|..+|+.++.+++..+.++|..+.+|......+|+++-
T Consensus 5 e~~~~L~~~I~eL~LSvR~~N~Lk~~gI~tvgdLv~~se~dLl~i~NfG~kSl~EI~~~L 64 (86)
T 3k4g_A 5 EFDPILLRPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVL 64 (86)
T ss_dssp CCCGGGGSBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCHHHCCCHHHHCCCHHHHHHHCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 108887196987278899998725543937999984899998178898772699999999
No 75
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=94.21 E-value=0.3 Score=26.86 Aligned_cols=101 Identities=9% Similarity=0.050 Sum_probs=45.5
Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCE--EEEEECCCEEEEEH
Q ss_conf 9864737998508456207999999999999999999887799998520838999998405763--89995793587447
Q gi|254780788|r 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRR 167 (526)
Q Consensus 90 ~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~--iiVdlg~~ea~Lp~ 167 (526)
.+-=||.+...+.+.. +| +.|++ .++++|..... .+..-++.-.+.|.
T Consensus 53 ~A~~GD~V~v~i~~~~-~r----------------------------~~g~v-~~il~r~~~~~vg~~~~~~~~~~~~P~ 102 (644)
T 2id0_A 53 KVMHGDRIIAVIHSEK-ER----------------------------ESAEP-EELVEPFLTRFVGKVQGKNDRLAIVPD 102 (644)
T ss_dssp TSCTTCEEEEEEECCS-SS----------------------------CEEEE-EEEEECSCSEEEEEEEEETTEEEEEES
T ss_pred CCCCCCEEEEEEECCC-CC----------------------------CEEEE-EEEEEECCCEEEEEEEEECCEEEEEEC
T ss_conf 4889999999996579-99----------------------------70799-999997883899999998989999878
Q ss_pred HHCCCC-----------CCCCCCCEEEEEEEEECCC-CCEEE-----EEEECCCH--HHHHHHHHHHHHHHH
Q ss_conf 874887-----------5115276699999761135-87028-----98715988--999999997667775
Q gi|254780788|r 168 DETISR-----------ENLRPGDRVKSYIYDVRRE-QRGPQ-----VLLSRTHP--QFMVKLFHMEVPEIY 220 (526)
Q Consensus 168 ~e~ip~-----------E~~~~Gdrika~i~~V~~~-~rgpq-----i~lSRt~p--~~l~~Lf~~EVPEI~ 220 (526)
+..+|. ..++.|+.+.+-|..--.. .+.|+ ++-+-.+| +...-|.+-.+|.-+
T Consensus 103 d~~~~~~i~~~~~~~~~~~~~~~~~v~v~i~~~p~~~~~~~~g~i~~~lg~~~~~~~~~~~~l~~~~l~~~f 174 (644)
T 2id0_A 103 HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 (644)
T ss_dssp STTCCSCEECCBCSSCCCCCCSSCEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCCSC
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 887876564244455444577898999998427766777753489998167888644678777654998537
No 76
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=94.12 E-value=0.0033 Score=41.20 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEEE--------CCC---CHH---------HHHHHHCCCCCCCE---------
Q ss_conf 8812765548862178899862778267995--------598---789---------99997628665424---------
Q gi|254780788|r 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVV--------WSP---DSA---------TFVINALRPAIVTK--------- 298 (526)
Q Consensus 248 iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~--------ws~---d~~---------~fi~nAl~PA~v~~--------- 298 (526)
-+-+|+.||.+|+.|+.+..+.+. +|.+.. +.. ++. ..+..+..+.....
T Consensus 12 ~~~vG~IIGk~G~~Ik~I~~~tg~-~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 1tua_A 12 PERLGAVIGPRGEVKAEIMRRTGT-VITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEEDQILV 90 (191)
T ss_dssp GGGHHHHHCGGGHHHHHHHHHHTE-EEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGSTTEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 787313349558899999999798-5996058871354347754311456677888999986125888998744442224
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 89875678799998534221102544278999998616745785
Q gi|254780788|r 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 299 v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
..-........+.||..+...-|||+|.|+|=-...||-+|++.
T Consensus 91 ~~~~~~~~~~~~~vp~~~vg~IIGk~G~tIk~I~~~Tga~I~i~ 134 (191)
T 1tua_A 91 VVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG 134 (191)
T ss_dssp EEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCEEEEC
T ss_conf 56766664424322177763773767389999999889879948
No 77
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.03 E-value=0.034 Score=33.76 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=53.3
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHH-------HCCC---------CCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 9985208389999984057638999579-35874478-------7488---------75115276699999761135870
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRD-------ETIS---------RENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~-------e~ip---------~E~~~~Gdrika~i~~V~~~~rg 195 (526)
.|..++|++|.|.|.++....+.||++. ..|+||-+ ++.. ++.|++||-|.|-|..+....
T Consensus 90 rY~P~vGDiVIGrV~~V~~~~w~VDI~S~~~A~L~ls~v~lpg~~~rrr~~~D~~~mr~~f~~GDlV~ArV~sv~~d~-- 167 (308)
T 2nn6_H 90 RYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDG-- 167 (308)
T ss_dssp CCCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTT--
T ss_pred CCCCCCCCEEEEEEEEEECCEEEEECCCCCCCEECCCCCCCCCCHHCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCC--
T ss_conf 436988999999998860545999818975634334301266611037675422568741788989999999826889--
Q ss_pred EEEEEECCCHH
Q ss_conf 28987159889
Q gi|254780788|r 196 PQVLLSRTHPQ 206 (526)
Q Consensus 196 pqi~lSRt~p~ 206 (526)
.+.||-.++.
T Consensus 168 -~i~Lttr~~~ 177 (308)
T 2nn6_H 168 -AVSLHTRSLK 177 (308)
T ss_dssp -EEEEECCSST
T ss_pred -CEEEEECCCC
T ss_conf -7699844778
No 78
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=94.00 E-value=0.061 Score=31.91 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 0122100011122588846788887732111477750588887765305889999999999
Q gi|254780788|r 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 (526)
Q Consensus 353 ~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA 413 (526)
.++......-++.|+++--....|..+|+.|+.++...+.++|..+.+|......+|+++-
T Consensus 16 ~~~~~~L~~~I~eL~LSvRs~N~L~~~gI~tvgdLv~~se~dLl~~~n~G~KSl~EIk~~L 76 (98)
T 1coo_A 16 PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 76 (98)
T ss_dssp --CCHHHHSBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 3452886096988277899999873817938999985799999758897687899999999
No 79
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=93.72 E-value=0.1 Score=30.20 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 888776530588999999999999999999998987754---2843566407799989999999879847889653
Q gi|254780788|r 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRE---LGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464 (526)
Q Consensus 392 ~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e---~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAe 464 (526)
.++|..|+|+...++..|.+ ++++-....-+.+.. ...-..|+.+.|+.+..+..|-+.||+|++||-.
T Consensus 79 ~~~l~~ipGIG~~i~~kI~E----il~tG~l~~le~l~~~~~~~~l~~l~~I~GiGpk~a~~l~~~Gi~tl~dL~~ 150 (381)
T 1jms_A 79 MKDTEGIPCLGDKVKSIIEG----IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp GGGGTTCSSCCHHHHHHHHH----HHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHH----HHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 99983699951999999999----9984985889998701533688998737787899999999869777999854
No 80
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=93.38 E-value=0.13 Score=29.42 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=23.8
Q ss_pred CEEEE-EECCCCCCCC----CCCCHHHHHH---HHHHHCCEEEEEEC
Q ss_conf 87999-9853422110----2544278999---99861674578552
Q gi|254780788|r 306 GRIEV-IVPKEQLSLA----IGRRGQNVRL---ASQLTGWTIDIITE 344 (526)
Q Consensus 306 ~~~~v-~v~~~qls~A----IGk~GqNvrL---as~Ltg~~idi~~~ 344 (526)
+++++ +||.+++..| -|...-|+.| |.+=-||++|=++-
T Consensus 281 rrvDi~~v~~~~~~~aLlyfTGS~~fN~~lR~~A~~~kG~~Lne~GL 327 (360)
T 2ihm_A 281 VRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGL 327 (360)
T ss_dssp EEEEEEECCTTSHHHHHHHHHSCHHHHHHHHHHHHHHHSCEECSSCE
T ss_pred EEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCC
T ss_conf 47799985889989999980276999999999999964980760337
No 81
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=93.08 E-value=0.13 Score=29.50 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=38.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 11225888467888877321114777505888877653058899999999
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
+...-+|....|+.|... |.|+.++..++.++|..++|+.++.|..|++
T Consensus 164 L~~Ipgi~~~~A~~Ll~~-f~Sl~~l~~as~~eL~~v~giG~~~A~~I~~ 212 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEIKK 212 (219)
T ss_dssp HHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHH-CCCHHHHHHCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 840799899999999998-6999999868899996089979999999999
No 82
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=92.91 E-value=0.08 Score=31.05 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=35.9
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 7999985342211025442789999986167457855220
Q gi|254780788|r 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 (526)
Q Consensus 307 ~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~ 346 (526)
.+.+.||.+.....|||+|.|+|--.+-||-+|.|....+
T Consensus 4 ~v~i~VP~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~ 43 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE 43 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTC
T ss_pred EEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEEECCCC
T ss_conf 9999969775031289897479999998798899970788
No 83
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.87 E-value=0.14 Score=29.35 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 111225888467888877321114777505888877653058899999999
Q gi|254780788|r 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 361 ~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
.+....+|....+..|. ..|.|++++..++.++|.++.| .++.|..|.+
T Consensus 5 ~L~~IPGIg~~~~~~Ll-~~fgSi~~l~~as~eeL~~v~G-~~~~A~~i~~ 53 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLM-HHVKNIAELAALSQDELTSILG-NAANAKQLYD 53 (63)
T ss_dssp HHHTSTTCCHHHHHHHH-HHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHH-HHCCCHHHHHHCCHHHHHHCCC-CHHHHHHHHH
T ss_conf 88529998899999999-9867999998799999987869-8999999999
No 84
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=92.86 E-value=0.016 Score=36.29 Aligned_cols=24 Identities=4% Similarity=-0.152 Sum_probs=9.6
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCHH
Q ss_conf 111477750588887765305889
Q gi|254780788|r 381 FADVEELACVKISEIASIEGFDEE 404 (526)
Q Consensus 381 f~SiEeIa~a~~eeL~~IeGfdee 404 (526)
|.+++.+..++.+++..++|+...
T Consensus 101 ~~~~~~l~~~~~e~l~~i~~ig~~ 124 (241)
T 1vq8_Y 101 RGLTEKTPDLSDEDARLLTQRHRV 124 (241)
T ss_dssp CSCTTCCCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCHHHHHCCCCCCHH
T ss_conf 278898873899998355651689
No 85
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.67 E-value=0.017 Score=35.99 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 225888467888877321114777505888877653058899999999999999
Q gi|254780788|r 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 364 e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
+..+|....++.|-++||.|++.|++++..+|+++.|+.+..++.++..|+..+
T Consensus 31 ~~~gi~~~~~~kL~~~g~~t~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 84 (343)
T 1v5w_A 31 QKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ------------------------------------------------------
T ss_pred HHCCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 868999899999998084369998635988888732867999999999998646
No 86
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=92.54 E-value=0.16 Score=28.81 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=33.6
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 799998534221102544278999998616745785
Q gi|254780788|r 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 307 ~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
+..+.||.+....-|||+|.|++--.+.||-+|.|.
T Consensus 8 t~~i~VP~~~vg~iIGk~G~~I~~I~~~tga~I~i~ 43 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKID 43 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEEC
T ss_pred EEEEEECHHHCCCEECCCCHHHHHHHHHHCCEEEEC
T ss_conf 899999867505018979723899999739959974
No 87
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.43 E-value=0.16 Score=28.88 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=25.1
Q ss_pred CEEEEE-ECCCCCCCCC----CCCHHHHHH--HHHHHCCEEEEEEC
Q ss_conf 879999-8534221102----544278999--99861674578552
Q gi|254780788|r 306 GRIEVI-VPKEQLSLAI----GRRGQNVRL--ASQLTGWTIDIITE 344 (526)
Q Consensus 306 ~~~~v~-v~~~qls~AI----Gk~GqNvrL--as~Ltg~~idi~~~ 344 (526)
.++++. ||.+++..|. |..--|++| -|+=-||+++=..-
T Consensus 247 rrvDl~~~~~~~~~~aLlyfTGSk~~n~~lR~~A~~kG~~Lne~GL 292 (335)
T 2bcq_A 247 RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHAL 292 (335)
T ss_dssp EEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEECSSCE
T ss_pred CEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 2478997388988888986328799999999999984980441004
No 88
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=92.41 E-value=0.078 Score=31.12 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=35.5
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 787999985342211025442789999986167457855
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
..+..+.||.+.....|||+|.|++-....||-+|.|..
T Consensus 4 ~~s~~i~VP~~~vg~iIGk~G~~i~~i~~~sga~I~i~~ 42 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 42 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC
T ss_pred CEEEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEECC
T ss_conf 478999989775381699898189999997599299806
No 89
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.38 E-value=0.23 Score=27.73 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.5
Q ss_pred CCCCCCCCCCHH
Q ss_conf 422110254427
Q gi|254780788|r 315 EQLSLAIGRRGQ 326 (526)
Q Consensus 315 ~qls~AIGk~Gq 326 (526)
.++-+-+||.|-
T Consensus 381 ~~~~Q~~GRaGR 392 (715)
T 2va8_A 381 MEYKQMSGRAGR 392 (715)
T ss_dssp HHHHHHHTTBCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999888503036
No 90
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=92.31 E-value=0.12 Score=29.89 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=37.9
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 6787999985342211025442789999986167457855220
Q gi|254780788|r 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 (526)
Q Consensus 304 ~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~ 346 (526)
...+..+.||.+.....|||+|.|++=-...||-+|.|.....
T Consensus 12 ~~~~~~v~Vp~~~vg~iIGk~G~~Ik~I~~~sg~~I~i~~~~~ 54 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 54 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC
T ss_pred CCEEEEEEECHHHCCEEECCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 9658999969776372399897379999998096799757788
No 91
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.07 E-value=0.23 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 00111225888467888877321114777505888877653058899999999
Q gi|254780788|r 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 359 ~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
...+-...+|....+..|.. .|.|+..|+.++.++|..+.| .+..|..|.+
T Consensus 17 ~~~L~~iPGIg~k~~~~Ll~-~f~sl~~i~~AS~eeL~~v~G-~~~~Ak~i~~ 67 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILG-NAANAKQLYD 67 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHH-HCCCHHHHHHCCHHHHHHCCC-CHHHHHHHHH
T ss_conf 99998389999999999999-966999998599999988759-7999999999
No 92
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=91.85 E-value=0.14 Score=29.24 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=36.3
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 67879999853422110254427899999861674578552
Q gi|254780788|r 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 304 ~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
...+.++.||.+....-||++|.|+|--.+.||-+|.|...
T Consensus 4 ~~~t~~v~VP~~~vg~iIG~~G~~i~~I~~~tg~~I~i~~~ 44 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP 44 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC
T ss_pred CCEEEEEEECHHHCCEEECCCCCHHHHHHHHHCCEEEECCC
T ss_conf 86899999886544628998998399999973995998278
No 93
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.38 E-value=0.03 Score=34.23 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCCCCEEEE---------------CCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 8999997628665424898---------------756-78799998534221102544278999998616745785
Q gi|254780788|r 283 SATFVINALRPAIVTKVVL---------------DED-VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 283 ~~~fi~nAl~PA~v~~v~~---------------de~-~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
+...+..||.-|+.-+..+ .+. -+...+-+|.+.....||.+|.|+|---.=||-+|||-
T Consensus 521 ~~~il~~al~qA~~gr~~il~~m~~~i~~pr~~~~~~aP~~~~~~i~~~ki~~~IG~gGk~I~~i~e~tg~~idi~ 596 (723)
T 3cdi_A 521 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 596 (723)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHEECCCHHHHHHHHHHHCCEEEEE
T ss_conf 9999999999999999999999997506664333578872799997878855506887088999999889889983
No 94
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=91.21 E-value=0.14 Score=29.19 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=35.8
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf 8799998534221102544278999998616745785522
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
..+.+.||.+....-|||+|.|+|--.+-||-+|+|....
T Consensus 3 ~~vei~VP~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~ 42 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKG 42 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTT
T ss_pred EEEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEEECCC
T ss_conf 6999993974446369969868999999879899980687
No 95
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=91.12 E-value=0.74 Score=23.95 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 32111477750588887765---305889999999999999999999989877542843566407799989999999879
Q gi|254780788|r 379 EGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENG 455 (526)
Q Consensus 379 eGf~SiEeIa~a~~eeL~~I---eGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~g 455 (526)
.+|.|++.++.++.++|.++ -||-.-.+..|++-|+....... .....+....-++|+.++|+.+.++....-.+
T Consensus 64 ~~~~t~~~la~a~~~eL~~~ir~~G~~~~Ka~~l~~~a~~i~~~~~--~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~~ 141 (218)
T 1pu6_A 64 DDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQ--SFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHS--SHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 2489999997799999999999879958999999999999998663--10379946799999848996699999999998
No 96
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=90.93 E-value=0.13 Score=29.43 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=36.5
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf 78799998534221102544278999998616745785522
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
..+..+.||.+.....|||+|.|++--.+.||-+|.|....
T Consensus 14 ~~~~~i~Vp~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~ 54 (94)
T 1x4m_A 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG 54 (94)
T ss_dssp CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSC
T ss_pred CEEEEEEECHHHHCCEECCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 67999997867400009959733799999809779975788
No 97
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=90.81 E-value=0.32 Score=26.62 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=71.6
Q ss_pred HHCCCCCCCE-EEEECCCCCEEEEEEEEEEECCCCCCCCE-----ECHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 6136874535-99974998839999998851767787532-----34899986288986473799850845620799999
Q gi|254780788|r 40 RSLYGTMSDI-RVEINPETGDISLFRLLEVVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 (526)
Q Consensus 40 kK~~~~~~~i-~V~iD~~tG~i~i~~~~~VVedved~~~e-----I~l~~A~~~~~~~~iGD~i~~~i~~~~fgRiaAq~ 113 (526)
++-.+.++.+ .+.||+.+|++.+.. +.|..- -++.+-++ ++|=.....=.|.-.++ ..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~~~~~~~~~~~~-----~~~w~~~~~~~~~~~s~-~~~~ 150 (640)
T 2xr1_A 85 EEVVPKESVISSYYFDPDSGEVIIEA--------EKPGLVIGKHGATLREITK-----QIGWIPKVVRTPPIKSR-TVKN 150 (640)
T ss_dssp HHHSCGGGCEEEEEECTTTSEEEEEE--------SSHHHHHCSSSHHHHHHHH-----HHCSEEEEEECCSSCCH-HHHH
T ss_pred HHHCCCCCCCEEEEECCCCCEEEEEE--------CCCEEEECCCCHHHHHHHH-----HHCCEEEEEECCCCCCH-HHHH
T ss_conf 97589656830589738973899996--------7975565677357999999-----75983689977999727-8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--------------------EEEEEECCCCEEEEEECC---CEEEEEHHHC
Q ss_conf 99999999999998877999985208389--------------------999984057638999579---3587447874
Q gi|254780788|r 114 AKQVIIQKVREAERDRQYLEFKDKVGEII--------------------SGTVKRVEYGNVIVDLGN---SDGVIRRDET 170 (526)
Q Consensus 114 AKQvI~QkireaEr~~i~~ef~~r~Geiv--------------------~G~V~r~e~~~iiVdlg~---~ea~Lp~~e~ 170 (526)
.++.+.+-- .||..+...+-.++..=. +.+.-..+...+++|.|- ....+.....
T Consensus 151 ~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~irit~LGG~~EIGrsc~lv~~~~~~ILlDcG~~~~~~~~~~~~~~ 228 (640)
T 2xr1_A 151 IREFMRNNL--KERKEILKTVGRKIHRECTSKDQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLY 228 (640)
T ss_dssp HHHHHHHTH--HHHHHHHHHHHHHHTSCCCCSCCCCEEEEEECSSSSBCCEEEEECSSCEEEECCCCBCSSCSSCCCCTT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 999999849--999999998678627998789980899994788861527799996896999988888785233574435
Q ss_pred CCCCCCCCCCEEEEEEEEEC-------------CCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 88751152766999997611-------------35870289871598899999999
Q gi|254780788|r 171 ISRENLRPGDRVKSYIYDVR-------------REQRGPQVLLSRTHPQFMVKLFH 213 (526)
Q Consensus 171 ip~E~~~~Gdrika~i~~V~-------------~~~rgpqi~lSRt~p~~l~~Lf~ 213 (526)
+|. .+.. ++++|++..=- ...+| +|+.|...-+|++.|+.
T Consensus 229 ~p~-~~~l-~~iDAV~LTHaH~DH~G~Lp~L~k~g~~~-PIY~T~~T~~L~~~ll~ 281 (640)
T 2xr1_A 229 VPE-VFPL-NQIDAVIVTHAHLDHQGLVPLLFKYGYEG-PVYCTPPTRDLMVLLQL 281 (640)
T ss_dssp STT-TCSG-GGCCEEECCSSCHHHHTTHHHHHHTTCCS-CEEECHHHHHHHHHHHH
T ss_pred CCC-CCCH-HHCCEEEECCCCHHHHCCHHHHHHCCCCC-CEEECHHHHHHHHHHHH
T ss_conf 577-6873-01889998889767638659998528998-89977799999999999
No 98
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=90.80 E-value=0.21 Score=27.97 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=34.6
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf 799998534221102544278999998616745785522
Q gi|254780788|r 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 307 ~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
.+.+.||.++...-|||+|.|+|=..+.||-+|+|....
T Consensus 8 ~i~~~VP~~~vG~IIGk~G~~Ik~i~~~tga~I~i~~~~ 46 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL 46 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC
T ss_pred EEEEEECHHHCCEEECCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 599998966616458989848983233159699974688
No 99
>2vnu_D Exosome complex exonuclease RRP44; rRNA processing, RNA degradation, cytoplasm, RNA-binding, RNA processing, DIS3P, nucleus, hydrolase; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=90.63 E-value=0.82 Score=23.61 Aligned_cols=13 Identities=31% Similarity=0.120 Sum_probs=8.1
Q ss_pred CCCCCEEEEECCH
Q ss_conf 8647379985084
Q gi|254780788|r 91 IDIGGVVSDPLPP 103 (526)
Q Consensus 91 ~~iGD~i~~~i~~ 103 (526)
+-=||.+..+|-|
T Consensus 69 A~~GD~V~Vell~ 81 (760)
T 2vnu_D 69 AFNGDQVIVELLP 81 (760)
T ss_dssp CCTTCEEEEEECC
T ss_pred CCCCCEEEEEECC
T ss_conf 8589999999855
No 100
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=90.53 E-value=0.18 Score=28.50 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=34.9
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 87999985342211025442789999986167457855
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
.++++.||.+.....|||+|.|++-..+.||-+|.+..
T Consensus 11 ~~~ei~VP~~~vG~IIGk~G~~Ik~I~~~tg~~I~i~~ 48 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ 48 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECS
T ss_pred CEEEEEECHHHCCEEECCCCCHHHHHHHHCCCEEEECC
T ss_conf 62999978665784389998025899986798899727
No 101
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=89.89 E-value=0.24 Score=27.52 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=48.1
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCC----------HHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87999985342211025442789999986167457855220----------01101001221000111225888467888
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE----------DSINRQKDFNERTQFFMQAINVDEIIAHL 375 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~----------~~~~~~~e~~~~~~~f~e~LdVDE~iA~~ 375 (526)
-+..+.||.+...+.|||+|.|+|-.-+-||-.+....+.. ...... ....+...+.+.|+......
T Consensus 4 f~~~~~vp~~~vg~iIGk~G~~Ik~i~~~tg~~~~~~~~~~~~~~I~g~~~~~v~~~---~~~~~~~~~~i~Vp~~~~g~ 80 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKA---RSFLEFAEDVIQVPRNLVGK 80 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHH---HHHHCEEEEEEEEEGGGHHH
T ss_pred CEEEEEECHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH---HHHCCCEEEEECCCHHHHCC
T ss_conf 179999997887355795628899999971994476158887259974878887888---87423414775157777343
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8773211147775
Q gi|254780788|r 376 LVAEGFADVEELA 388 (526)
Q Consensus 376 LV~eGf~SiEeIa 388 (526)
++--|-.++.+|-
T Consensus 81 iIG~~G~~I~~I~ 93 (144)
T 2qnd_A 81 VIGKNGKLIQEIV 93 (144)
T ss_dssp HHCGGGHHHHHHH
T ss_pred CCCCCCHHHHHHH
T ss_conf 0255642699999
No 102
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein/DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A
Probab=89.78 E-value=0.2 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=34.8
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 78799998534221102544278999998616745785
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
.-++.+.||..+.+.-||++|.|++--.+-||-+|++-
T Consensus 4 ~~t~~i~ip~~~~g~iIG~~G~~I~~I~~~tga~I~i~ 41 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINIS 41 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred CEEEEEEECHHHEEEEECCCCHHHHHHHHHCCCEEEEC
T ss_conf 48999998866723589999834999999709889973
No 103
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=89.61 E-value=0.33 Score=26.52 Aligned_cols=248 Identities=18% Similarity=0.187 Sum_probs=122.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEE--EEEECCCCCCCEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 028987159889999999976677755808785663167750349--999408998812765548862178899862778
Q gi|254780788|r 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL--AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 (526)
Q Consensus 195 gpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKI--AV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gE 272 (526)
|..+ =..-+|+++..||. -||-|-|.+= +.|-.- +....|+++.+-. -|.|=++=.+
T Consensus 76 G~~l-d~~~s~~~L~el~~------~DGAvIi~~d----~~rI~~A~~~L~~~~~~~~~e-----~GtRHRaA~g----- 134 (377)
T 3c1y_A 76 GFWL-DTDFSAEKLYELSK------MDGAIVLSED----ITKIYYANVHLVPDPTIPTGE-----TGTRHRTAER----- 134 (377)
T ss_dssp SEEE-EEECCHHHHHHHTT------SSSEEEECTT----SSEEEEEEEEECCCTTSCCCC-----CSHHHHHHHH-----
T ss_pred CEEE-CCCCCHHHHHHHHC------CCCEEEECCC----CCEEEEEEEECCCCCCCCCCC-----CCHHHHHHHH-----
T ss_conf 8487-73607999998733------6875997499----658999986548999988865-----7616777627-----
Q ss_pred CEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCC-----CCCCCCCCCHHHH-----------HHHHHHHC
Q ss_conf 2679955987899999762866542489875678799998534-----2211025442789-----------99998616
Q gi|254780788|r 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE-----QLSLAIGRRGQNV-----------RLASQLTG 336 (526)
Q Consensus 273 kIDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~-----qls~AIGk~GqNv-----------rLas~Ltg 336 (526)
+. -.+-|-| |+|.|+...+.+++... ..+.-.+|-.|-. +....|+.
T Consensus 135 --------------ia-e~tda~v--i~VSee~g~Isl~~~g~~~~l~~~~~il~ranQal~tLekyr~~ld~~~~~L~~ 197 (377)
T 3c1y_A 135 --------------LA-KQTGKVV--IAVSRRRNIISLYYKNYKYVVNQVDFLISKVTQAISTLEKYKDNFNKLLSELEV 197 (377)
T ss_dssp --------------HH-HHHSSEE--EEECSSCCCEEEECSSCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HH-HHHCCEE--EEEECCCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf --------------88-8629879--999734775899988878994487888889999999999999999999987229
Q ss_pred CEEEE-EECCCHHH-HHHCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 74578-55220011-010012----2100011122588846788887732111477750588887765305889999999
Q gi|254780788|r 337 WTIDI-ITEEEDSI-NRQKDF----NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 (526)
Q Consensus 337 ~~idi-~~~~~~~~-~~~~e~----~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~ 410 (526)
..++= .|-.+-.. -+..|+ .+.....+-.|+.+--+..+=.++=...+++..+.-..+... ++++++.+.++.
T Consensus 198 lE~ed~vT~~dV~~v~qr~emv~ri~~ei~~yi~eLG~egrli~mQleELv~~Vee~~~LlIrDY~~-e~~~~~~a~~~L 276 (377)
T 3c1y_A 198 LELENRVTLADVVRTLAKGFELLRIVEEIRPYIVELGEEGRLARMQLRELTEDVDDLLVLLIMDYSS-EEVEEETAQNIL 276 (377)
T ss_dssp HHHTTCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHTTHHHHHHHHHHHHSS-SCCCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCHHHHHHHH
T ss_conf 9880565399999999999999999999999999816451429999999981748788999987186-778867899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCH----HHH-------------HHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCC
Q ss_conf 99999999999998987754284----356-------------6407799989999999879847889653267752123
Q gi|254780788|r 411 GRAREYLEGIDITLQKKIRELGV----SEE-------------LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 (526)
Q Consensus 411 ~rA~~~L~~~~~~~~e~~~e~~~----~e~-------------L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~ 473 (526)
..-...-. .......+-+|- ... |..++.++...+..|.+ .-++++.|-.-|.+||.++
T Consensus 277 ~~L~~~el---ldl~~ia~~LGy~~~g~~~llD~~v~pRGyRiLskiprlp~~vienLV~-~FgsLq~Ll~AS~EeL~eV 352 (377)
T 3c1y_A 277 QDFITRRE---PSPISISRVLGYDVQQAAQLDDVLVSARGYRLLKTVARIPLSIGYNVVR-MFKTLDQISKASVEDLKKV 352 (377)
T ss_dssp HHHHTTSC---CCHHHHHHHTTCCCSCGGGGGGCBCCCCSHHHHHHTSCCCHHHHHHHHH-HHCSHHHHTTCCHHHHTTS
T ss_pred HHHHHCCC---CCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHH-HHCCHHHHHHCCHHHHHHC
T ss_conf 86222244---6768999982999878666444565741788872389997889999999-8468999985899889645
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 12344432112453343588999999999
Q gi|254780788|r 474 SENKGGNIEKFDGFLSSLGTPKDQVESMI 502 (526)
Q Consensus 474 ~~~~~~~~~~~~gil~~~~l~~~~A~~lI 502 (526)
. |+.+..|..+-
T Consensus 353 e-----------------GIGe~RAr~Ir 364 (377)
T 3c1y_A 353 E-----------------GIGEKRARAIS 364 (377)
T ss_dssp T-----------------TCCHHHHHHHH
T ss_pred C-----------------CCCHHHHHHHH
T ss_conf 8-----------------85899999999
No 104
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=89.50 E-value=0.27 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.6
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 879999853422110254427899999861674578552
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
-...+.||.......||++|.|++--.+.||-+|.|...
T Consensus 15 v~~~i~IP~~~vg~iIG~~G~~I~~I~~~tga~I~i~~~ 53 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKE 53 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCS
T ss_pred EEEEEEECHHHCCEEECCCCHHHHHHHHHHCCEEEECCC
T ss_conf 899999896763821996971999746875989997888
No 105
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=89.25 E-value=0.66 Score=24.33 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCH
Q ss_conf 4777505888877653058899999999999999999999898775428435664077999899999998798478
Q gi|254780788|r 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTM 459 (526)
Q Consensus 384 iEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIktl 459 (526)
+..|-.++.++|..++|+...+|..|...= +......--++|..++|+++..+..+.+.++.++
T Consensus 31 L~~iNtAs~~eL~~lpgIg~~~A~~Iv~~R------------~~~G~f~sledL~~v~Gi~~k~~eki~k~~~L~~ 94 (98)
T 2edu_A 31 LDLLNEGSARDLRSLQRIGPKKAQLIVGWR------------ELHGPFSQVEDLERVEGITGKQMESFLKANILGL 94 (98)
T ss_dssp HHHHHHSCHHHHHHSTTCCHHHHHHHHHHH------------HHHCCCSSGGGGGGSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHCCCCCHHHHHHHHHHH------------HHCCCCCCHHHHHCCCCCCHHHHHHHHHCCCEEC
T ss_conf 100437899999647998999999999999------------9859928899984489989999999998387515
No 106
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=89.02 E-value=0.33 Score=26.55 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=35.1
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 7879999853422110254427899999861674578552
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
...+.+.||.+.....|||+|.|+|=-.+-||-+|++-..
T Consensus 2 ~~~i~i~IP~~~vg~vIGk~G~~Ik~I~~~tga~I~i~~~ 41 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 41 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC
T ss_pred CEEEEEEECHHHHCEEECCCCHHHHHHHHHHCCEEEEEEE
T ss_conf 5699999775770511899987799999985980899972
No 107
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=88.50 E-value=0.29 Score=26.99 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=34.6
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 87999985342211025442789999986167457855
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
-+..+.||......-|||+|.|++=--+.||-+|.|..
T Consensus 14 ~t~~i~VP~~~vg~iIG~~G~~I~~I~~~sga~I~v~~ 51 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE 51 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS
T ss_pred EEEEEEECHHHCCEEECCCCCCHHHHHHHHCCEEEECC
T ss_conf 89999999775672799898424899997498899747
No 108
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=87.64 E-value=0.32 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=36.0
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
Q ss_conf 8799998534221102544278999998616745785522
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~ 345 (526)
..+.+.||.+.....|||+|+|+|=.-+-||-+|++-...
T Consensus 3 ~~i~v~IP~~~vG~IIGk~G~~Ik~i~~~tg~~I~i~~~~ 42 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 42 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT
T ss_pred EEEEEEECHHHHCEEECCCCHHHHHHHHHHCCCEEEECCC
T ss_conf 1599994724503579999979999999879937863467
No 109
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=87.50 E-value=0.32 Score=26.62 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=35.0
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 879999853422110254427899999861674578552
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
-+..+.||.+.....|||+|.|+|--.+.||-+|+|...
T Consensus 15 vt~~i~ip~~~vg~iIGk~G~~I~~I~~~tg~~I~i~~~ 53 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD 53 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSC
T ss_pred EEEEEEECHHHCCCEECCCCHHHHHHHHHHCCEEEECCC
T ss_conf 899999997864803898972699999972978997478
No 110
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=87.49 E-value=0.034 Score=33.78 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=30.8
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 799998534221102544278999998616745785
Q gi|254780788|r 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 307 ~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
...+-+|.++....||.+|.|+|--..-||-+|||-
T Consensus 599 ~~~~~i~~~ki~~vIG~gGk~Ik~i~e~tg~~Idi~ 634 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE 634 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC---
T ss_pred EEEEEECHHHHHHEECCCCHHHHHHHHHHCCEEEEE
T ss_conf 899998957701037888288999999889889982
No 111
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein/RNA complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=87.28 E-value=0.37 Score=26.19 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 67879999853422110254427899999861674578552
Q gi|254780788|r 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 304 ~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
++..+.+.||.......|||+|.|+|=..+-||-+|++-..
T Consensus 4 ~~~~~r~~vP~~~~g~IIGk~G~~Ik~i~~~tg~~I~~~~~ 44 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 44 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCT
T ss_pred CCEEEEEEECHHHHCEEECCCCHHHHHHHHHHCCEEEECCC
T ss_conf 72899999886772417998987799999987983874443
No 112
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=87.19 E-value=0.32 Score=26.61 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=34.9
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 879999853422110254427899999861674578552
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
.++.+-||....+.-|||+|.|+|-..+-||-+|.+-..
T Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~~I~~I~~~tg~~I~i~~~ 55 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDK 55 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCT
T ss_pred EEEEEEECHHHHHHCCCCCCCCHHHHHHHHCCEEEECCC
T ss_conf 689999998998352798973099999986998995688
No 113
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, cytoplasm, DNA-binding, nucleus, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Homo sapiens}
Probab=87.08 E-value=0.39 Score=25.96 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=34.6
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 87999985342211025442789999986167457855
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
-++.+.||.++....|||+|.|++--.+-||-+|++-.
T Consensus 5 ~t~ri~vp~~~vg~vIGk~G~~Ik~I~~~tg~~I~v~~ 42 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE 42 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEEC
T ss_pred EEEEEEECHHHHCEEECCCCHHHHHHHHHHCCEEEECC
T ss_conf 89999984567122378887789999998798599656
No 114
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=86.64 E-value=0.4 Score=25.92 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=34.6
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 87999985342211025442789999986167457855
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
-+.++-||......-||++|.|+|--.+-||-+|++-.
T Consensus 5 ~~~~i~Vp~~~~~~iIG~~G~~I~~I~~~t~~~I~i~~ 42 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP 42 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCC
T ss_pred EEEEEEECHHHHHHCCCCCCHHHHHHHHHHCCEEEECC
T ss_conf 89999999887523289999019999998498899788
No 115
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=86.34 E-value=1.5 Score=21.64 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3566407799989999999879847889653267752123123444321124533435889999999999841
Q gi|254780788|r 434 SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHAR 506 (526)
Q Consensus 434 ~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR 506 (526)
+..|+.|+++++..+.+|.+++|+++.||.++...++..+. +++....+.+--.++
T Consensus 160 ~~pL~Qlp~i~~~~~~~l~~~~i~sl~~l~~~~~~~~~~~l-----------------~l~~~~~~~i~~~~~ 215 (339)
T 2q0z_X 160 DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALL-----------------QLTDSQIADVARFCN 215 (339)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHH-----------------CCCHHHHHHHHHHHT
T ss_pred CCHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHH-----------------CCCHHHHHHHHHHHH
T ss_conf 77323246589999999986699989999728999998775-----------------237689999999887
No 116
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=85.85 E-value=0.52 Score=25.10 Aligned_cols=40 Identities=38% Similarity=0.352 Sum_probs=36.3
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 7879999853422110254427899999861674578552
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
+.++.|.||.+....-|||+|.|+|---.-||-+|.+-..
T Consensus 3 ~~r~~V~IP~~~vG~IIGk~G~~Ik~I~~~tg~~I~v~~~ 42 (191)
T 1tua_A 3 KPRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE 42 (191)
T ss_dssp CCCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT
T ss_pred CCEEEEECCHHHHHHCCCCCHHHHHHHHHHHCCEEEEECC
T ss_conf 8638987897873133495588999999997985996058
No 117
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} SCOP: a.60.2.7
Probab=85.70 E-value=0.88 Score=23.38 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7750588887765305889999999999999999999989877542843566407799989999999
Q gi|254780788|r 386 ELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 (526)
Q Consensus 386 eIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~ 452 (526)
+|-.|+.++|..++|++...|..|.+.- ....-++|.++.|++...+..+.
T Consensus 20 diN~As~~eL~~lpGig~~~A~~Iv~~R----------------~f~s~~dL~~v~gi~~~~~~~i~ 70 (75)
T 2duy_A 20 SLNEASLEELMALPGIGPVLARRIVEGR----------------PYARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp ETTTCCHHHHTTSTTCCHHHHHHHHHTC----------------CCSSGGGGGGSTTCCHHHHHHHG
T ss_pred ECCCCCHHHHHHCCCCCHHHHHHHHHCC----------------CCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 0712879999777898999999999858----------------98989999757898999999999
No 118
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=85.65 E-value=1.6 Score=21.40 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=4.0
Q ss_pred CCCEEEEEEE
Q ss_conf 0838999998
Q gi|254780788|r 138 VGEIISGTVK 147 (526)
Q Consensus 138 ~Geiv~G~V~ 147 (526)
.|.++.|+.+
T Consensus 246 ~g~l~~G~lr 255 (977)
T 2wp8_J 246 NGVLYQGNIQ 255 (977)
T ss_dssp TTSSEEEEEE
T ss_pred CCEEEEEEEE
T ss_conf 7908999999
No 119
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=85.60 E-value=0.67 Score=24.29 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred HHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 56640779998999999987984788965326775212
Q gi|254780788|r 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 435 e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
.+|.+|+++++.+...|.+-||.|.+||.++...++..
T Consensus 4 ~~L~~LPNig~~~e~~L~~iGI~~~~~L~~~ga~~~y~ 41 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFL 41 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf 77724899999999999993999899998679999999
No 120
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} PDB: 1mjc_A 3mef_A
Probab=85.32 E-value=1.7 Score=21.29 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=37.8
Q ss_pred EEEEEEEECC--CC--EEEEEECCCEEEEEHHHCCCC--CCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8999998405--76--389995793587447874887--5115276699999761135870289
Q gi|254780788|r 141 IISGTVKRVE--YG--NVIVDLGNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 141 iv~G~V~r~e--~~--~iiVdlg~~ea~Lp~~e~ip~--E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
-++|+|+.++ +| +|..|-|.-+.++..+..-+. ..++.|++|.+- +....+|||-
T Consensus 5 r~~G~Vk~fd~~kGyGFI~~d~g~~diF~H~s~l~~~~~~~l~~G~~V~f~---~~~~~kG~~A 65 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFE---ITNGAKGPSA 65 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEE---EEEETTEEEE
T ss_pred EEEEEEEEECCCCCEEEEEECCCCCEEEEEEHHHCCCCCCCCCCCCEEEEE---EEECCCCCEE
T ss_conf 115799999499984899868998229999088253379878999999999---9969999786
No 121
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular modeling; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=84.61 E-value=1.8 Score=21.07 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3566407799989999999879847889653267752123123444321124533435889999999999841
Q gi|254780788|r 434 SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHAR 506 (526)
Q Consensus 434 ~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR 506 (526)
+..|+.+++++...+.+|.+++|+|+.+|.++...++..+. +++...++.+.-.++
T Consensus 156 ~~~L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~~~~~~l-----------------~~~~~~~~~i~~~~~ 211 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEIL-----------------TLTDSQLAQVAAFVN 211 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHC-----------------CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----------------CCCHHHHHHHHHHHH
T ss_conf 86667662079999999997599999999875176799997-----------------107789999999986
No 122
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=84.14 E-value=0.47 Score=25.39 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=34.7
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 879999853422110254427899999861674578552
Q gi|254780788|r 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 (526)
Q Consensus 306 ~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~ 344 (526)
-+..+.||.+-..+.|||+|.|+|-.-+-||-+|.+..+
T Consensus 15 ~t~ev~Vp~~~vg~vIG~gG~~I~~I~~~tg~~i~~~~~ 53 (91)
T 2cpq_A 15 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE 53 (91)
T ss_dssp EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET
T ss_pred EEEEEEECHHHHHHCCCCCCHHHHHHHHHHCCEEEEECC
T ss_conf 589999997773320798966699999971984874067
No 123
>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U*
Probab=82.71 E-value=1 Score=22.97 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 7775058888776530588999999999999999999998987754284356640779998999999987
Q gi|254780788|r 385 EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 (526)
Q Consensus 385 EeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~ 454 (526)
=+|-.|+.++|..++|+...+|..|.. -....--+||+++.|+++..+..|..+
T Consensus 25 idlN~As~~eL~~lpGig~~~A~~Iv~----------------~gpf~s~~dL~~V~Gig~~~~e~ik~y 78 (104)
T 3bz1_U 25 IDLNNTNIAAFIQYRGLYPTLAKLIVK----------------NAPYESVEDVLNIPGLTERQKQILREN 78 (104)
T ss_dssp EETTSSCGGGGGGSTTTTHHHHHHHHH----------------SCCCSSGGGGGGCTTCCHHHHHHHHHH
T ss_pred EECCCCCHHHHHHCCCCCHHHHHHHHH----------------CCCCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 578408999996589979999999997----------------499798999963899899999999986
No 124
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=82.56 E-value=1.3 Score=22.20 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 775058888776530588999999999999999999998987754284356640779998999999987
Q gi|254780788|r 386 ELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 (526)
Q Consensus 386 eIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~ 454 (526)
+|-.++.++|..++|+...+|..|.. -.....-+||++++|+++.....|.++
T Consensus 56 dlN~A~~~eL~~lpGig~~~A~~Iv~----------------~gpf~svedl~~v~Gig~~~~e~l~~~ 108 (134)
T 1s5l_U 56 DLNNTNIAAFIQYRGLYPTLAKLIVK----------------NAPYESVEDVLNIPGLTERQKQILREN 108 (134)
T ss_dssp ETTTSCGGGGGGSTTCTHHHHHHHHH----------------TCCCSSGGGGGGCTTCCHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH----------------CCCCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 16407899997710346999999998----------------278487999961775799999999986
No 125
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=81.91 E-value=0.72 Score=24.03 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=39.0
Q ss_pred CCCCCEEEE-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 665424898-756787999985342211025442789999986167457855
Q gi|254780788|r 293 PAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 293 PA~v~~v~~-de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
|+.+-+++- -++.-+..+.||......-|||+|.|+|=-.+-||-+|++-.
T Consensus 3 ~~~~~~iv~~~~~~~~~~i~Ip~~~~~~iIG~~G~~I~~I~~~t~~~I~~~~ 54 (95)
T 2ctm_A 3 SGSSGRIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQ 54 (95)
T ss_dssp SSCCSCCCCCTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCC
T ss_pred CCCHHHHHHHHHCCEEEEEEECHHHHHHHHCCCCHHHHHHHHHHCCEEEECC
T ss_conf 8418789998754578999999899857418896339999998598899789
No 126
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58}
Probab=81.09 E-value=2.1 Score=20.56 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=36.7
Q ss_pred EEEEEEEECC--CCE--EEEEECCCEEEEEHHHCCCC--CCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8999998405--763--89995793587447874887--5115276699999761135870289
Q gi|254780788|r 141 IISGTVKRVE--YGN--VIVDLGNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 141 iv~G~V~r~e--~~~--iiVdlg~~ea~Lp~~e~ip~--E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
+.+|+|+.++ +|+ |..|-|+-+-++..+..-.. ..++.|++|.+- +....+|||-
T Consensus 1 M~~G~Vkwf~~~kGyGFI~~~~~~~dvFvH~s~l~~~~~~~l~~G~~V~f~---~~~~~~G~~A 61 (67)
T 3cam_A 1 MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFD---VTTGPKGKQA 61 (67)
T ss_dssp CEEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEE---EEEETTEEEE
T ss_pred CCCEEEEEEECCCCCEEEEECCCCEEEEEEEHHHCCCCCCCCCCCCEEEEE---EEECCCCCCC
T ss_conf 998399999599994899977997289998456152269858999999999---9989999461
No 127
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=81.06 E-value=1.6 Score=21.45 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-EEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 211025442789999986167-4578552200110100122100011122588846788887732111477750588887
Q gi|254780788|r 317 LSLAIGRRGQNVRLASQLTGW-TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 (526)
Q Consensus 317 ls~AIGk~GqNvrLas~Ltg~-~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL 395 (526)
.|..||.+-.-+++||.+-.= .+-+....+. ..+-... .+-+-.+|...+++.|-..|+.|+.+++..+...|
T Consensus 140 ~siGia~nk~lAK~As~~~Kp~g~~vi~~~~~-----~~~L~~l-pv~~l~Gig~~~~~~L~~~Gi~ti~dl~~~~~~~L 213 (352)
T 1jx4_A 140 VTVGISKNKVFAKIAADMAKPNGIKVIDDEEV-----KRLIREL-DIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKL 213 (352)
T ss_dssp EEEEEESSHHHHHHHHHHHCSSCEEECCHHHH-----HHHHHHS-BGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHCCEEEEECCCC-----CCCCCCC-CEEEECCCCCHHHHHHHHHCCCCHHHHHCCCHHHH
T ss_conf 45524771778999987654267333204320-----0000267-60241488704688999846868254132797899
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q ss_conf 7653058899999999999
Q gi|254780788|r 396 ASIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 396 ~~IeGfdee~a~eL~~rA~ 414 (526)
....| ...+..|...|+
T Consensus 214 ~~~fG--~~~~~~l~~~a~ 230 (352)
T 1jx4_A 214 KGMIG--EAKAKYLISLAR 230 (352)
T ss_dssp HHHHC--HHHHHHHHHHHT
T ss_pred HHHHC--HHHHHHHHHHHC
T ss_conf 97858--487999999848
No 128
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=81.03 E-value=2.3 Score=20.38 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCC
Q ss_conf 99999999999999999989877542843566407799989999999879847889653267752123
Q gi|254780788|r 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 (526)
Q Consensus 406 a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~ 473 (526)
...+|..|..|-.+-. ............|.+++|+.+.....|-.+ -.|++.+...|.+||...
T Consensus 142 Lq~iRDEaHRFAi~~h---Rk~r~k~~~~S~Ld~I~GIG~k~~~~Ll~~-Fgs~~~I~~As~eeL~~v 205 (220)
T 2nrt_A 142 LVQIRDETHRFAVSYH---RKRREKESLRSVLDNVPGIGPIRKKKLIEH-FGSLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHCCCCCCHHCCCCCHHHHHHHHHH-CCCHHHHHHCCHHHHHHC
T ss_conf 9999999989879879---999752103464100379699999999998-189999971899999868
No 129
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* 2gho_A 1hqm_A ...
Probab=80.75 E-value=0.26 Score=27.27 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 0001112258884678888773211147775058888776530588999999999
Q gi|254780788|r 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 (526)
Q Consensus 358 ~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~r 412 (526)
.....++.|++.--....|-.+|+.|+.++...+.++|.++.+|...-.+|++++
T Consensus 251 ~l~~~Ie~L~LSvRs~NcLk~a~I~ti~dLv~~s~~eLl~i~N~G~KSl~EI~ek 305 (315)
T 2a6h_A 251 ELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEA 305 (315)
T ss_dssp -------------------------------------------------------
T ss_pred HHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHH
T ss_conf 4368099822879888678785994899987399999847999851039999999
No 130
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.67 E-value=0.51 Score=25.11 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=35.2
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 787999985342211025442789999986167457855
Q gi|254780788|r 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 305 ~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
..+..+.||.+....-||++|.|+|--.+-||-+|.+-.
T Consensus 9 ~~t~~i~Vp~~~~g~iIG~~G~~i~~I~~~tg~~I~i~~ 47 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPG 47 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCC
T ss_pred EEEEEEEECHHHHCCEECCCCHHHHHHHHHHCCEEEECC
T ss_conf 189999999686273488885389999998899999678
No 131
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=78.46 E-value=0.34 Score=26.41 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 2100011122588846788887732111477750588887765305889999999999999
Q gi|254780788|r 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 (526)
Q Consensus 356 ~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~ 416 (526)
......-++.|++.--...-|-.+|+.|+.++...+.++|.+|.+|....++|+.++-+++
T Consensus 250 ~~~l~~~Ie~LeLSvRs~NcLkra~I~ti~dLv~~s~~dLl~ikNfGkKSl~EI~~kL~~~ 310 (329)
T 3lu0_A 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 (329)
T ss_dssp -------------------------------------------------------------
T ss_pred CHHHHCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 6576387988527788886575718918999764799999558997620099999999974
No 132
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=78.37 E-value=0.96 Score=23.13 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.8
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 799998534221102544278999998616745785
Q gi|254780788|r 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 307 ~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
+..+-||......-||++|.|+|=-..-||-+|++-
T Consensus 18 ~~~i~VP~~~~~~iIG~~G~~I~~I~~~t~~~I~ip 53 (104)
T 2ctk_A 18 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP 53 (104)
T ss_dssp EEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECC
T ss_pred EEEEEECHHHHHHCCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 999999989995615899633999999809989977
No 133
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=78.29 E-value=3 Score=19.52 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHH-HCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 887732111477750588887765-30588-9999999999999999999989877542843566407799989999999
Q gi|254780788|r 375 LLVAEGFADVEELACVKISEIASI-EGFDE-ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 (526)
Q Consensus 375 ~LV~eGf~SiEeIa~a~~eeL~~I-eGfde-e~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~ 452 (526)
.|.. -|-|++++|.++.+++.++ .|..= ..|..|+..|+..+.. ..-+-....++|+.|+|+.+.++....
T Consensus 63 ~~~~-~~pt~~~la~a~~~ev~~~~~~lGyy~ra~~l~~~a~~i~~~------~~g~~P~~~~~L~~LpGVG~~TA~ail 135 (369)
T 3fsp_A 63 QFID-RFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTR------YGGKVPDDPDEFSRLKGVGPYTVGAVL 135 (369)
T ss_dssp HHHH-HCCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHH------HTTCCCCSHHHHHTSTTCCHHHHHHHH
T ss_pred HHHH-HCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEC------CCCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf 9999-778999997789999999987468899999998521227600------489999879998524225889999999
No 134
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=77.96 E-value=1.1 Score=22.61 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=42.5
Q ss_pred CHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899999762866542489875678799998534221102544278999998
Q gi|254780788|r 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 (526)
Q Consensus 282 d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~ 333 (526)
...+|+.+-|.-|-+.+|.+.-......|++--..--+.|||+|++++--.+
T Consensus 11 eIre~l~k~l~~AGis~IeIeR~~~~i~I~I~tarPG~vIGrkG~~I~~L~~ 62 (92)
T 1wh9_A 11 ELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp HHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEECCCCHHHHHHHH
T ss_conf 9999999988768736599998799179999978976242347553999999
No 135
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=77.84 E-value=0.86 Score=23.46 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=35.5
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 5678799998534221102544278999998616745785
Q gi|254780788|r 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 303 e~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
+...+..+.||......-|||+|.|++=-.+-||-+|++-
T Consensus 14 ~~~~t~~v~Ip~~~~~~iIG~~G~~I~~I~~~tg~~I~~p 53 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIP 53 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCC
T ss_pred CCEEEEEEEECHHHHHHCCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 4817899999989881516979651999999859989966
No 136
>3gqc_A DNA repair protein REV1; protein-DNA complex, alternative splicing, DNA damage, DNA repair, DNA synthesis; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=77.51 E-value=3.1 Score=19.36 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 22588846788887732111477750588887765305889999999999
Q gi|254780788|r 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 (526)
Q Consensus 364 e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA 413 (526)
+..+|...+++.|-..|+.|+.+++..+.+.|....| ..+...|...|
T Consensus 319 ~lpGIG~~~~~kL~~lGI~Ti~DL~~l~~~~L~~~fG--~k~g~~L~~~a 366 (504)
T 3gqc_A 319 NLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFG--PKTGQMLYRFC 366 (504)
T ss_dssp GSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHC--HHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHC--CHHHHHHHHHC
T ss_conf 4478787899999861685099985599999998847--17899999960
No 137
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695}
Probab=77.42 E-value=3.1 Score=19.35 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=38.6
Q ss_pred CHHHHHHHHCCCCCC--CEEEE-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 789999976286654--24898-756787999985342211025442789999986167
Q gi|254780788|r 282 DSATFVINALRPAIV--TKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 (526)
Q Consensus 282 d~~~fi~nAl~PA~v--~~v~~-de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~ 337 (526)
...+|+.+-|+.... ..+.+ ..+...+.+-+.-++.++.|||+|+...=-..|+..
T Consensus 6 evke~Le~lL~~mg~~~~~~~v~~~~~~~i~i~i~g~d~~~LIGk~G~tL~AlQ~L~~~ 64 (152)
T 2pt7_G 6 EIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFN 64 (152)
T ss_dssp HHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999999779972699986337977999976873554637796437999999999
No 138
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=76.67 E-value=1.1 Score=22.80 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=32.1
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHC
Q ss_conf 664077999899999998798478896532677521
Q gi|254780788|r 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~ 471 (526)
.+.+++|+...+..+|.+.||.|.-||+.++.++|.
T Consensus 185 pl~~l~GiG~~~~~~L~~~Gi~ti~dl~~~~~~~L~ 220 (221)
T 1im4_A 185 DIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp BGGGSTTCCHHHHHHHHHTTCCBTTC----------
T ss_pred CHHHHCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHC
T ss_conf 875418947999999999299209998579999811
No 139
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3h4d_A* 3h4b_A* 2alz_A* 3h40_A* 1t3n_A* 1zet_A*
Probab=76.07 E-value=3.3 Score=19.21 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHCC-EEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 11025442789999986167-45785522001101001221000111225888467888877321114777505888877
Q gi|254780788|r 318 SLAIGRRGQNVRLASQLTGW-TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 (526)
Q Consensus 318 s~AIGk~GqNvrLas~Ltg~-~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~ 396 (526)
|..||.+=.=+++||.+-.- .+-+....... ++-......-+..+|...+++.|-..|+.|+.+++..+...|.
T Consensus 196 siGIa~nk~lAKlAs~~~kP~g~~~i~~~~~~-----~~L~~l~pv~~l~GiG~~~~~~L~~~Gi~ti~dl~~~~~~~L~ 270 (420)
T 3osn_A 196 CAGVASNKLLAKLVSGVFKPNQQTVLLPESCQ-----HLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILE 270 (420)
T ss_dssp EEEEESSHHHHHHHHTSSCSSCEEECCGGGHH-----HHHHHCSSGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHH
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCCCCHHHHH-----HHHHCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHH
T ss_conf 88745638778999997230486225668899-----9985667688856888789999864256609987527553699
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 653058899999999999
Q gi|254780788|r 397 SIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 397 ~IeGfdee~a~eL~~rA~ 414 (526)
...| ...+..|...|+
T Consensus 271 ~~fG--~~~g~~l~~~a~ 286 (420)
T 3osn_A 271 KELG--ISVAQRIQKLSF 286 (420)
T ss_dssp HHHH--HHHHHHHHHHHT
T ss_pred HHHC--CHHHHHHHHHHC
T ss_conf 8859--399999999967
No 140
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=74.88 E-value=3.6 Score=18.88 Aligned_cols=82 Identities=23% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCCHHH---HHHCCCCCCHHHHHHHHHCC
Q ss_conf 588887765305889999999999999999999-----------9898775428435---66407799989999999879
Q gi|254780788|r 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDI-----------TLQKKIRELGVSE---ELCSIPGIDSKIKVALGENG 455 (526)
Q Consensus 390 a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~-----------~~~e~~~e~~~~e---~L~~l~gl~~~~~~~L~e~g 455 (526)
.+..++..--|+..-....|+..|..++-.... .....+ ..|+.+ +|+.++|++...+-+|.++|
T Consensus 574 ~~~~~i~~~~~~~~g~l~~l~~~a~~~~~~~~~~~~~~~~~~l~~l~~rl-~~gv~~e~~~L~~i~~v~~~~ar~L~~~g 652 (702)
T 2p6r_A 574 KDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERI-KHGVKEELLELVRIRHIGRVRARKLYNAG 652 (702)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSTTHHHHH-HHTCCGGGHHHHTSTTCCHHHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HCCCCHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf 99899998859898899999999999999999999973889899999999-84998416967088999999999999879
Q ss_pred CCCHHHHHHCCHHHHCCC
Q ss_conf 847889653267752123
Q gi|254780788|r 456 IKTMEDLAGCSVDDLLGW 473 (526)
Q Consensus 456 IktleDlAels~dEL~~~ 473 (526)
|+|++|+|.. .+.+..+
T Consensus 653 ~~s~~~i~~~-~~~~~~~ 669 (702)
T 2p6r_A 653 IRNAEDIVRH-REKVASL 669 (702)
T ss_dssp CCSHHHHHHT-HHHHHHH
T ss_pred CCCHHHHHHC-CHHHHHH
T ss_conf 9999999709-7788977
No 141
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=74.41 E-value=1.5 Score=21.70 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHH-HHHHCCEEEEEE
Q ss_conf 6787999985342211025442789999-986167457855
Q gi|254780788|r 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLA-SQLTGWTIDIIT 343 (526)
Q Consensus 304 ~~~~~~v~v~~~qls~AIGk~GqNvrLa-s~Ltg~~idi~~ 343 (526)
+..+..+.||.......|||+|.|+|=. .+.||-+|++-.
T Consensus 15 ~~~t~~i~Vp~~~~~~iIG~~G~~i~~I~~~~~~v~I~~p~ 55 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV 55 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC
T ss_pred CCEEEEEEECHHHHHHCCCCCCCCHHHHHHHCCCCEEEECC
T ss_conf 85799999898998560788984099999983984798178
No 142
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.96.1.2
Probab=72.68 E-value=4.1 Score=18.51 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 32111477750588887765---3058899999999999999999999898775428435664077999899999998
Q gi|254780788|r 379 EGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 (526)
Q Consensus 379 eGf~SiEeIa~a~~eeL~~I---eGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e 453 (526)
+-|-|+++++.++.++|.++ -||-.-.|..|+.-|+.....-. -.-...-++|+.|+|+.+.++...-.
T Consensus 62 ~~~pt~~~la~a~~~el~~~i~~~G~~~~KA~~l~~~a~~i~~~~~------g~vp~~~~eL~~LPGVG~ktA~~vl~ 133 (221)
T 1kea_A 62 VKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYG------GRVPRNRKAILDLPGVGKYTCAAVMC 133 (221)
T ss_dssp HHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHT------TSCCSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9788999998299999999999878999999999999999988605------87301288874489876567999999
No 143
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=70.98 E-value=2.1 Score=20.69 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 88846788887732111477750588887765305889999999999
Q gi|254780788|r 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 (526)
Q Consensus 367 dVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA 413 (526)
+|...+++.|-..|+.|+.+++..+...|....| ......|...|
T Consensus 186 GiG~~~~~~L~~~Gi~t~~dl~~~~~~~l~~~fG--~~~g~~l~~~~ 230 (354)
T 3bq0_A 186 GIGSVLARRLNELGIQKLRDILSKNYNELEKITG--KAKALYLLKLA 230 (354)
T ss_dssp TCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHC--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHC--HHHHHHHHHHH
T ss_conf 9647899999981896999954589878998848--17889999983
No 144
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=69.78 E-value=0.76 Score=23.86 Aligned_cols=180 Identities=19% Similarity=0.208 Sum_probs=84.3
Q ss_pred EECCCCCCCEEEEECCCCH-HHHHHHHHHCCCCEEEEECCCCHH---HHHHHHCCCCCCCEEEECCCCCEEEEEECCCCC
Q ss_conf 9408998812765548862-178899862778267995598789---999976286654248987567879999853422
Q gi|254780788|r 242 FSSDSSIDPVGACVGMRGS-RVQAVVTELRDEKIDIVVWSPDSA---TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 (526)
Q Consensus 242 ~s~d~~iDpVGAcVG~rGs-Riq~I~~EL~gEkIDii~ws~d~~---~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~ql 317 (526)
-||-.+-+|||+||=.... .-++=- .-=+|.-+.-.||.+ +.+.+-++... ++.. |--+|
T Consensus 22 iSh~~G~~~V~s~Vvf~~g~~~K~~Y---R~f~ik~~~~~DDy~~m~Evl~Rr~~r~~------~~~~-------~~PDL 85 (226)
T 3c65_A 22 NSNIYGADPVSALVVFLDGKPAKKEY---RKYKVKTVAGPNDYETMREVVRRRYTRVL------KEGL-------PLPDL 85 (226)
T ss_dssp EEESSSSSCEEEEEEEETTEECGGGC---EEEECCCCCTTCHHHHHHHHHHHHHHHHH------HHTC-------CCCSE
T ss_pred CCCCCCCCCEEEEEEEECCCCCHHHC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHH------HCCC-------CCCCE
T ss_conf 87658988559999997895386766---02265678899749999999999877766------3189-------99998
Q ss_pred CCCCCCCHHHHHHHH----HHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 110254427899999----8616745785522001101001221000111225888467888877321114777505888
Q gi|254780788|r 318 SLAIGRRGQNVRLAS----QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 (526)
Q Consensus 318 s~AIGk~GqNvrLas----~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~e 393 (526)
=+-=|-.|| +..|. .+.++.|.+.+-+-...++..+..-... -+.+.++.. .
T Consensus 86 ilIDGGkgQ-l~~a~~~l~~~~~~~i~ii~iaK~~~~~~~~~~~~~~--~~~i~l~~~---------------------s 141 (226)
T 3c65_A 86 IIIDGGKGH-LSAVRDVLENELGLDVPLAGLAKDEKHRTSELLAGDP--PDVVPLDRQ---------------------S 141 (226)
T ss_dssp EEESSCHHH-HHHHHHHHHHTSCCCCCEEEC--------CCCEETTT--TEECCCCTT---------------------S
T ss_pred EEECCCHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC--CCCEECCCC---------------------C
T ss_conf 997898899-9999999997478885444302452113432201587--542306878---------------------8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 8776530588999999999999999999998987754284356640779998999999987984788965326775212
Q gi|254780788|r 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 394 eL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
.+. -....+|..|..|-.+-. ............|.+++|+.+.....|-. --.|++.+...|.+||..
T Consensus 142 ~~l-------~lLq~iRDEaHRFAi~~h---Rk~r~k~~~~S~Ld~I~GIG~~~~~~Ll~-~Fgs~~~i~~As~eeL~~ 209 (226)
T 3c65_A 142 QEF-------YLLQRIQDEVHRFAVMFH---RKTRQKTMFHSVLDDIPGVGEKRKKALLN-YFGSVKKMKEATVEELQR 209 (226)
T ss_dssp HHH-------HHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred HHH-------HHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCHHHHHHHHH-HCCCHHHHHHCCHHHHHH
T ss_conf 899-------999999999999999999---99874032037110268869999999999-818999997389999987
No 145
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=66.63 E-value=5.4 Score=17.63 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=7.0
Q ss_pred CCCCCEEEEEEEEECCCC
Q ss_conf 152766999997611358
Q gi|254780788|r 176 LRPGDRVKSYIYDVRREQ 193 (526)
Q Consensus 176 ~~~Gdrika~i~~V~~~~ 193 (526)
+.+|..=.|+...+.-..
T Consensus 164 L~~~~~r~alsv~~~id~ 181 (469)
T 2r7d_A 164 LGLHEVSPALSICLDLDP 181 (469)
T ss_dssp TTSSSSEEEEEEEEEECT
T ss_pred CCCCCCCCCEEEEEEEEC
T ss_conf 898888610127999908
No 146
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=66.43 E-value=5.4 Score=17.60 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHH
Q ss_conf 88887732111477750588887765---305889999999999999999999989877542843566407799989999
Q gi|254780788|r 373 AHLLVAEGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449 (526)
Q Consensus 373 A~~LV~eGf~SiEeIa~a~~eeL~~I---eGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~ 449 (526)
...|.. -|-|+++++.++.++|..+ -||-.-.|..|+.-|+.....-. -+-...-++|+.|+|+.+.++.
T Consensus 51 ~~~L~~-~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~------g~~p~~~~~L~~LpGVG~kTA~ 123 (211)
T 2abk_A 51 TAKLYP-VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN------GEVPEDRAALEALPGVGRKTAN 123 (211)
T ss_dssp HHHHTT-TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT------TSCCSCHHHHHHSTTCCHHHHH
T ss_pred HHHHHH-HCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHCCCCCHHHHH
T ss_conf 999998-758999986279999999998621799999999999999999848------9998329998717887369999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780788|r 450 ALG 452 (526)
Q Consensus 450 ~L~ 452 (526)
...
T Consensus 124 ~il 126 (211)
T 2abk_A 124 VVL 126 (211)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 147
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=66.07 E-value=2.1 Score=20.58 Aligned_cols=32 Identities=6% Similarity=0.169 Sum_probs=14.2
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 98534221102544278999998616745785
Q gi|254780788|r 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 311 ~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
-||+++.+.-||++|++++--.+-.|-.|+|.
T Consensus 266 dvp~~~h~~~Ig~~g~~i~~l~~~~~V~I~i~ 297 (376)
T 3n89_A 266 NIKNTDMAEPSRVSDRNIHMIIDESGIILKMT 297 (376)
T ss_dssp EEEGGGBC--------CBEEEECTTSCEEEEE
T ss_pred ECCHHHHHHHCCCCCHHHHHHHHHHCCEEECC
T ss_conf 15778865341667069999999829289756
No 148
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=63.55 E-value=6.1 Score=17.22 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=39.1
Q ss_pred EEEEEEEC--CCCEE-EEEECCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 99999840--57638-99957935874478748875115276699999761135870289
Q gi|254780788|r 142 ISGTVKRV--EYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 142 v~G~V~r~--e~~~i-iVdlg~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
++|+|++. ++|+= |..-++-+-++..+.......++.|++|.+-+.+ ..||||-
T Consensus 3 ~~G~Vk~~~~~kGfGFI~~~~G~DvF~H~s~l~g~~~l~~G~~V~F~~~~---~~kG~~A 59 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTT---NNKGLSA 59 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEE---CSSSEEE
T ss_pred CCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEE---CCCCCEE
T ss_conf 55599999899996898746998399998720798855999899999998---9998357
No 149
>3mr3_A DNA polymerase ETA; POL ETA, polymerase, thymine dimer, CPD, XPV, xeroderma PIGM variant, DNA damage; HET: DNA TTD DZ4; 1.75A {Homo sapiens} PDB: 3mr2_A* 3mr5_A* 3mr6_A*
Probab=62.29 E-value=6.4 Score=17.07 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-EEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 211025442789999986167-4578552200110100122100011122588846-78888773211147775058888
Q gi|254780788|r 317 LSLAIGRRGQNVRLASQLTGW-TIDIITEEEDSINRQKDFNERTQFFMQAINVDEI-IAHLLVAEGFADVEELACVKISE 394 (526)
Q Consensus 317 ls~AIGk~GqNvrLas~Ltg~-~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~-iA~~LV~eGf~SiEeIa~a~~ee 394 (526)
.|.-||.+-.=+++||.+-.= .+-+....+.. +|-.-. .+-+-.+|... .++.|-..|+.|+.+++..+.+.
T Consensus 215 ~siGia~nk~lAKlAs~~~KP~g~~~i~~~~~~-----~~l~~l-pi~~l~GiG~k~~~~~L~~~gi~ti~dl~~~~~~~ 288 (435)
T 3mr3_A 215 CSAGISHNKVLAKLACGLNKPNRQTLVSHGSVP-----QLFSQM-PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQ 288 (435)
T ss_dssp EEEEEESSHHHHHHHHHHTCSSCEEECCGGGHH-----HHHHTC-BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHH
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHH-----HHHHHC-CCCEECCCCHHHHHHHHHHHCCCCHHHHHHCCHHH
T ss_conf 032056853566898975699863477878999-----999837-67760776757899999995894789987399989
Q ss_pred HHHHHCCCHHHHHHHHHHHH
Q ss_conf 77653058899999999999
Q gi|254780788|r 395 IASIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 395 L~~IeGfdee~a~eL~~rA~ 414 (526)
|....| ...+..|...|+
T Consensus 289 L~~~~G--~~~g~~l~~~a~ 306 (435)
T 3mr3_A 289 LQSHFG--EKNGSWLYAMCR 306 (435)
T ss_dssp HHHHHC--HHHHHHHHHHTT
T ss_pred HHHHHC--HHHHHHHHHHHC
T ss_conf 999978--688999999966
No 150
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=62.16 E-value=2.4 Score=20.23 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=59.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 1122588846788887732111477750--58888776530588999-99999999999999999898775428435664
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELAC--VKISEIASIEGFDEETA-VEIQGRAREYLEGIDITLQKKIRELGVSEELC 438 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~--a~~eeL~~IeGfdee~a-~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~ 438 (526)
..+.++.. .-++.+.++||+...-+.. .+.++|..+ |+..-.- ..|. +|-..+...............+.+=|.
T Consensus 20 WL~~igl~-~Y~~~F~~~~idg~~ll~~~~l~~~dL~~l-GI~~~~hR~kil-~~i~~l~~~~~~~~~~~~~~~v~~WL~ 96 (148)
T 2kiv_A 20 WLESIGLP-QYENHLMANGFDNVQAMGSNVMEDQDLLEI-GILNSGHRQRIL-QAIQLLPKMRPIGHDGAHPTSVAEWLD 96 (148)
T ss_dssp HHHHHSCT-TSHHHHHHTTTTBGGGGTSSCCCHHHHHHH-CCSSTTSHHHHH-HHHHHCSCCCSSCCCCCCCSSHHHHHH
T ss_pred HHHHCCHH-HHHHHHHHCCCCHHHHHHHCCCCHHHHHHC-CCCCHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99988709-999999994996899973122789999885-999889999999-999875024630012442578999988
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 0779998999999987984788965326775212
Q gi|254780788|r 439 SIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 439 ~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
.+ ||. +....+.++|+.+++.+..++..||..
T Consensus 97 ~i-gL~-~Y~~~F~~~g~~~~~~l~~lt~~~l~~ 128 (148)
T 2kiv_A 97 SI-ELG-DYTKAFLINGYTSMDLLKKIAEVELIN 128 (148)
T ss_dssp TT-TCC-THHHHHHHHTCCSHHHHTSCCHHHHHH
T ss_pred HC-CHH-HHHHHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf 17-989-999999996998899996568999998
No 151
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=60.01 E-value=4.7 Score=18.04 Aligned_cols=53 Identities=26% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCEEEEEEEECC--CCEEE--EEECCCEEEEEHHHCCCCC----CCCCCCEEEEEEEEEC
Q ss_conf 0838999998405--76389--9957935874478748875----1152766999997611
Q gi|254780788|r 138 VGEIISGTVKRVE--YGNVI--VDLGNSDGVIRRDETISRE----NLRPGDRVKSYIYDVR 190 (526)
Q Consensus 138 ~Geiv~G~V~r~e--~~~ii--Vdlg~~ea~Lp~~e~ip~E----~~~~Gdrika~i~~V~ 190 (526)
.-.-++|+|+.++ +|+-+ .|-|.-+-++..+..-++. ++++|+.+..-+..+.
T Consensus 13 ~~~~~~g~vk~f~~~kg~gFi~~~~g~~d~f~h~SAIq~~G~~~~~l~~G~~V~g~V~~it 73 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECC
T ss_pred CCCCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC
T ss_conf 3684468799785899818872478962488898765433333316421149999999855
No 152
>3gku_A Probable RNA-binding protein; APC21302, structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=59.54 E-value=7.1 Score=16.74 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHHHCC----CCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99997628----66542489875678799998534221102544278999998616
Q gi|254780788|r 285 TFVINALR----PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 (526)
Q Consensus 285 ~fi~nAl~----PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg 336 (526)
.|+.+-|. ++++ +|..+++...+.+-+.-+++++.|||+|+...=--.|+.
T Consensus 68 ~~Le~ll~~mg~~~~v-~v~~~~~~~~i~i~i~g~d~g~LIGk~G~tL~aLQ~L~~ 122 (225)
T 3gku_A 68 EFLEQVFDAMNMAVDI-SVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVS 122 (225)
T ss_dssp HHHHHHHHHTTCCCEE-EEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEE-EEEEECCCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 9999999975998148-999944760899996066232231479710689999999
No 153
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=57.77 E-value=7.6 Score=16.53 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHHHHCCE-EEEE-ECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 2110254427899999861674-5785-5220011010012210001112258884678888773211147775058888
Q gi|254780788|r 317 LSLAIGRRGQNVRLASQLTGWT-IDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 (526)
Q Consensus 317 ls~AIGk~GqNvrLas~Ltg~~-idi~-~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~ee 394 (526)
.|..||.+-.=++|||.+-.=. +-+. ...+. -.+|-.. -.+-+--+|....++.|-..|+.|+.+++..+ ..
T Consensus 242 ~SiGIa~nk~lAKlAs~~~KP~G~~~~~~~~~~----~~~~L~~-lpv~~l~GIG~~~~~~L~~~gI~ti~dL~~~~-~~ 315 (459)
T 1t94_A 242 ASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQA----VMDFIKD-LPIRKVSGIGKVTEKMLKALGIITCTELYQQR-AL 315 (459)
T ss_dssp EEEEEESSHHHHHHHHHHTTTTCEEECCSSHHH----HHHHHTT-CBGGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HH
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEECCHHH----HHHHHHH-CCCCEECCCCCHHHHHHHHHCCCCHHHHHHHH-HH
T ss_conf 254424768888988973699870899146899----9999862-98353368884137889870784999999858-88
Q ss_pred HHHHHCCCHHHHHHHHH
Q ss_conf 77653058899999999
Q gi|254780788|r 395 IASIEGFDEETAVEIQG 411 (526)
Q Consensus 395 L~~IeGfdee~a~eL~~ 411 (526)
|..+.| ......+..
T Consensus 316 l~~~~g--~~~~~~~~~ 330 (459)
T 1t94_A 316 LSLLFS--ETSWHYFLH 330 (459)
T ss_dssp HHHHSC--HHHHHHHHH
T ss_pred HHHHHC--CHHHHHHHH
T ss_conf 999845--136664687
No 154
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.37 E-value=6.6 Score=16.99 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=28.4
Q ss_pred ECCCCC-CCCCCCCHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 853422-11025442789999986167457855220
Q gi|254780788|r 312 VPKEQL-SLAIGRRGQNVRLASQLTGWTIDIITEEE 346 (526)
Q Consensus 312 v~~~ql-s~AIGk~GqNvrLas~Ltg~~idi~~~~~ 346 (526)
+|+.++ -+-||.+|.|+|-.-+-||-+|.|.....
T Consensus 24 ~P~fn~~g~IIGp~G~tik~I~~~TGakI~IrG~Gs 59 (119)
T 2yqr_A 24 VPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGS 59 (119)
T ss_dssp CTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTT
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCEEEEEECCC
T ss_conf 999885026899986699999998799799850787
No 155
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=56.13 E-value=8 Score=16.34 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCCEEEEEEEECC--CCEEEE--EECCCEEEEEHHHCCCC------CCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 0838999998405--763899--95793587447874887------5115276699999761135870289
Q gi|254780788|r 138 VGEIISGTVKRVE--YGNVIV--DLGNSDGVIRRDETISR------ENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 138 ~Geiv~G~V~r~e--~~~iiV--dlg~~ea~Lp~~e~ip~------E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
..+-++|+|+.++ +|+=+| |-|+-+-++-.+..-+. ..++.|++|.+- +....+|||-
T Consensus 5 m~~r~~G~VKwfn~~KGfGFI~~ddg~~DvFvH~s~i~~~~~~~~~~~L~~G~~V~f~---~~~~~~g~~A 72 (79)
T 1h95_A 5 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFD---VVEGEKGAEA 72 (79)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEE---EEECSSSEEE
T ss_pred HCCCEEEEEEEEECCCCCEEEEECCCCEEEEEEHHHHHCCCCCCCCCCCCCCCEEEEE---EEECCCCCEE
T ss_conf 3383248999996899918998589970499996993047974333417999999999---9989999886
No 156
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans}
Probab=55.48 E-value=8.2 Score=16.27 Aligned_cols=85 Identities=20% Similarity=0.182 Sum_probs=56.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHCCCCCCHHHHHH-----HHH
Q ss_conf 21114777505888877653058899999999999999999-999898775428435664077999899999-----998
Q gi|254780788|r 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI-DITLQKKIRELGVSEELCSIPGIDSKIKVA-----LGE 453 (526)
Q Consensus 380 Gf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~-~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~-----L~e 453 (526)
-|.+.+.++.++.++|... |+..-.+.-++.-|+.+.... ..............+.|+.++|+.+-.+.. |+.
T Consensus 83 ~~p~p~~l~~~~~~~Lr~~-Gls~~K~~~i~~la~~~~~g~~~~~~l~~~~~~e~~~~L~~ikGIGpWTA~~illf~lgr 161 (233)
T 2h56_A 83 ALEKPEQLYRVSDEALRQA-GVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGR 161 (233)
T ss_dssp CCCCTHHHHTSCHHHHHHT-TCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHCCHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 9999688862999999777-997878999999999998177520010126888999998806884878999999996899
Q ss_pred CCCCCHHHHHHC
Q ss_conf 798478896532
Q gi|254780788|r 454 NGIKTMEDLAGC 465 (526)
Q Consensus 454 ~gIktleDlAel 465 (526)
-++-...|++=.
T Consensus 162 ~DvfP~~Dl~l~ 173 (233)
T 2h56_A 162 LDVLSVGDVGLQ 173 (233)
T ss_dssp SCCCCTTCHHHH
T ss_pred CCCCCCCCHHHH
T ss_conf 978986379999
No 157
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=54.96 E-value=8.4 Score=16.21 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH
Q ss_conf 8887732111477750588887765---3058899999999999999999999898775428435664077999899999
Q gi|254780788|r 374 HLLVAEGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA 450 (526)
Q Consensus 374 ~~LV~eGf~SiEeIa~a~~eeL~~I---eGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~ 450 (526)
..|. .-|-|++++|.++.+++..+ -||-. .+..|+..|+..+... .-+-....++|+.|+|+.+.++..
T Consensus 53 ~~l~-~~~~t~~~la~a~~~el~~~i~~~gy~~-ka~~l~~~a~~i~~~~------~g~~p~~~~~L~~LpGVG~kTA~~ 124 (225)
T 1kg2_A 53 ERFM-ARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLH------GGKFPETFEEVAALPGVGRSTAGA 124 (225)
T ss_dssp HHHH-HHCSSHHHHHHSCHHHHHHHHTTSCCTH-HHHHHHHHHHHHHHHS------TTSCCCSHHHHHTSTTCCHHHHHH
T ss_pred HHHH-HHCCCHHHHHHCCHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHC------CCCCCCHHHHHHHCCCCCHHHHHH
T ss_conf 9999-9878999997228999999986167327-7999999999999870------799974299997589874789999
Q ss_pred H
Q ss_conf 9
Q gi|254780788|r 451 L 451 (526)
Q Consensus 451 L 451 (526)
.
T Consensus 125 i 125 (225)
T 1kg2_A 125 I 125 (225)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 158
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=52.93 E-value=9 Score=15.99 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=11.7
Q ss_pred CCCEEEEECCCCCEEEEEE
Q ss_conf 4535999749988399999
Q gi|254780788|r 46 MSDIRVEINPETGDISLFR 64 (526)
Q Consensus 46 ~~~i~V~iD~~tG~i~i~~ 64 (526)
.....+.|++ .|.+.++.
T Consensus 23 ~~~a~v~i~~-dG~v~v~~ 40 (330)
T 3hrd_B 23 PAAAFVEIHG-DGSANVMF 40 (330)
T ss_dssp CEEEEEEECT-TSCEEEEE
T ss_pred CCEEEEEEEC-CCEEEEEE
T ss_conf 7438999907-98099998
No 159
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=51.38 E-value=9.5 Score=15.82 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHC-CEEEE
Q ss_conf 678799998534221102544278999998616-74578
Q gi|254780788|r 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-WTIDI 341 (526)
Q Consensus 304 ~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg-~~idi 341 (526)
...+..+-||..-...-||++|.|+|=--.=|| -.|+.
T Consensus 25 ~~~t~~i~vP~~~h~~IIG~~G~~Ir~i~~~~g~~~i~~ 63 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEF 63 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEE
T ss_pred CCEEEEEECCHHHHHHEECCCCHHHHHHHHHCCCEEECC
T ss_conf 947999981888882406899446999999849818238
No 160
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=49.67 E-value=10 Score=15.63 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCHHHHHH-HHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHCCCCCCHHHHHHHH
Q ss_conf 3211147775058888776-530588-9999999999999999999989877542--843566407799989999999
Q gi|254780788|r 379 EGFADVEELACVKISEIAS-IEGFDE-ETAVEIQGRAREYLEGIDITLQKKIREL--GVSEELCSIPGIDSKIKVALG 452 (526)
Q Consensus 379 eGf~SiEeIa~a~~eeL~~-IeGfde-e~a~eL~~rA~~~L~~~~~~~~e~~~e~--~~~e~L~~l~gl~~~~~~~L~ 452 (526)
+-|-|++++|.++.+++.+ +.|+.= ..+..|+..|+..+. +.-... ...+.|..|+|+.+.++....
T Consensus 76 ~r~Pt~~~LA~A~~~ev~~~~~glGyy~ra~~l~~~a~~i~~-------~~~g~~p~~~~e~l~~LPGVG~kTA~aIl 146 (287)
T 3n5n_X 76 QKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVE-------ELGGHMPRTAETLQQLLPGVGRYTAGAIA 146 (287)
T ss_dssp HHCCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-------HSTTCCCSSHHHHHHHSTTCCHHHHHHHH
T ss_pred HHCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------HHCCCCCCCHHHHCCCCCCCCHHHHHHHH
T ss_conf 987799999767999999999856389999999999988889-------84798876215440468875689999999
No 161
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=49.26 E-value=10 Score=15.59 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 9998877999985208389999984
Q gi|254780788|r 124 EAERDRQYLEFKDKVGEIISGTVKR 148 (526)
Q Consensus 124 eaEr~~i~~ef~~r~Geiv~G~V~r 148 (526)
..++..++...++-.-.|+.|+--+
T Consensus 457 ~~~~~~~~~~l~~G~i~IvIgTp~l 481 (780)
T 1gm5_A 457 PSEKEKIKSGLRNGQIDVVIGTHAL 481 (780)
T ss_dssp HHHHHHHHHHHHSSCCCEEEECTTH
T ss_pred CHHHHHHHHHHHCCCCCCEECHHHH
T ss_conf 0039999999975997741144888
No 162
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=47.80 E-value=11 Score=15.43 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=37.0
Q ss_pred EEEEEEEECC--CCEEEE-EECCCEEEEEHHHCCCC--CCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 8999998405--763899-95793587447874887--511527669999976113587028
Q gi|254780788|r 141 IISGTVKRVE--YGNVIV-DLGNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 141 iv~G~V~r~e--~~~iiV-dlg~~ea~Lp~~e~ip~--E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
+.+|+|+.++ +|+=+| .-|+-+-++..+..-+. ..+++|++|.+-+.. .+..||||
T Consensus 1 M~~G~Vkwf~~~kGfGFI~~d~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~-~~~~kg~~ 61 (73)
T 3a0j_A 1 MQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEP-GRNGKGPQ 61 (73)
T ss_dssp CEEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEEC-CSCCSSSE
T ss_pred CCCEEEEEEECCCCEEEECCCCCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEE-CCCCCCCE
T ss_conf 99839998929998478315899709998477552369878999999999998-99998875
No 163
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=47.77 E-value=11 Score=15.43 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=34.2
Q ss_pred EEEEEEECC--CCE-EEEEECCCEEEEEHHHCCCC--CCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 999998405--763-89995793587447874887--5115276699999761135870289
Q gi|254780788|r 142 ISGTVKRVE--YGN-VIVDLGNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 142 v~G~V~r~e--~~~-iiVdlg~~ea~Lp~~e~ip~--E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
++|+|+.++ +|+ .|..-++.+-++..+..... ..+++|++|.+- +....+|||-
T Consensus 1 ~~G~Vk~f~~~kGfGFI~~~~g~dvFvH~s~l~~~g~~~l~~G~~V~f~---~~~~~~G~~A 59 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFE---IQEGKKGPQA 59 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEE---EECSSSCCEE
T ss_pred CEEEEEEEECCCCEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCEEEEE---EEECCCCCEE
T ss_conf 9289999939998289871899639999588163369978999999999---9989899799
No 164
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.47 E-value=6.9 Score=16.81 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf 7888877321114777505888877653058
Q gi|254780788|r 372 IAHLLVAEGFADVEELACVKISEIASIEGFD 402 (526)
Q Consensus 372 iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfd 402 (526)
-++.++.+||.+.+.+...+.++|..+ |+.
T Consensus 38 Y~~~F~~~g~~~~~~l~~lt~~dL~~l-GI~ 67 (97)
T 2dl0_A 38 YAGTLSTAGFSTLSQVPSLSHTCLQEA-GIT 67 (97)
T ss_dssp GHHHHHHHTCCSTTSGGGCCHHHHHHH-TCC
T ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHHC-CCC
T ss_conf 999999877753598876789999886-999
No 165
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=46.21 E-value=11 Score=15.26 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHH---H-H--HH
Q ss_conf 8702898715988999999997667775580878566316775034999940899881276554886217---8-8--99
Q gi|254780788|r 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRV---Q-A--VV 266 (526)
Q Consensus 193 ~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRi---q-~--I~ 266 (526)
..+-.|..|--.|..++..+..- . | .| ..||-|.+. ++|-+-|.|...- . + ..
T Consensus 187 ~~~l~v~~~tQ~p~~~r~~~a~~----l-g---------l~--~~~VrV~~~-----~vGGgFG~k~~~~~~~~~aa~~~ 245 (777)
T 2w3s_B 187 EGGVVIHCSSQHPSEIQHKVAHA----L-G---------LA--FHDVRVEMR-----RMGGGFGGKESQGNHLAIACAVA 245 (777)
T ss_dssp TTEEEEEESCSCHHHHHHHHHHH----H-T---------CC--GGGEEEEEC-----CCSCCTTTTTTTTHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----H-C---------CC--CCCEEEEEC-----CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99239998980727888676665----0-8---------98--312799977-----86677777765431456678998
Q ss_pred HHHCCCCEEEEECC-CCHHHHHHHHCCCCCCCEEE--ECCCCC
Q ss_conf 86277826799559-87899999762866542489--875678
Q gi|254780788|r 267 TELRDEKIDIVVWS-PDSATFVINALRPAIVTKVV--LDEDVG 306 (526)
Q Consensus 267 ~EL~gEkIDii~ws-~d~~~fi~nAl~PA~v~~v~--~de~~~ 306 (526)
.-.-|--+ .|- +-...|....-.|+-..++. +|.+.+
T Consensus 246 a~~~grPV---k~~~tR~e~~~~~~~r~~~~~~~~~~~~~dG~ 285 (777)
T 2w3s_B 246 ARATGRPC---KMRYDRDDDMVITGKRHDFRIRYRIGADASGK 285 (777)
T ss_dssp HHHHSSCE---EEECCHHHHHHHSCCCCCEEEEEEEEECTTSC
T ss_pred HHHHCCCE---EEECCEECCCCCCCCCCCEEEEEEEECCCCCE
T ss_conf 88749977---89744000124567878868999870366780
No 166
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 2es2_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2i5m_X 2i5l_X
Probab=45.94 E-value=11 Score=15.24 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=36.6
Q ss_pred EEEEEEEECC--CCEEEEEE-CCCEEEEEHHHCCCC--CCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8999998405--76389995-793587447874887--5115276699999761135870289
Q gi|254780788|r 141 IISGTVKRVE--YGNVIVDL-GNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 141 iv~G~V~r~e--~~~iiVdl-g~~ea~Lp~~e~ip~--E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
+-+|+|+..+ +|+=+|.. ++.+-++..+..-+. ..++.|++|.+-+ ....+|||-
T Consensus 1 M~~G~Vk~f~~~kGfGFI~~d~g~diF~H~s~l~~~~~~~l~~G~~V~f~~---~~~~~G~~A 60 (66)
T 1c9o_A 1 MQRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEI---VQGNRGPQA 60 (66)
T ss_dssp CEEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEE---EEETTEEEE
T ss_pred CCCEEEEEEECCCCEEEEECCCCCEEEEEEEHHCCCCCCCCCCCCEEEEEE---EECCCCCEE
T ss_conf 998099999699984998369993899997041515788679999999999---989999697
No 167
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal inorganic pyrophosphatase; ssgcid, inorganic phosphatase, hydrolase; 1.90A {Brucella melitensis biovar ABORTUS2308}
Probab=45.16 E-value=5.5 Score=17.54 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=15.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCCEE
Q ss_conf 2778267995598789999976286654248
Q gi|254780788|r 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 (526)
Q Consensus 269 L~gEkIDii~ws~d~~~fi~nAl~PA~v~~v 299 (526)
-.|.=+|++..++.| +.|..|.++
T Consensus 86 ~DgDPLDvlvl~~~~-------~~~G~vv~~ 109 (197)
T 3fq3_A 86 EDGDPIDVLVCNTRP-------LIPGCVINV 109 (197)
T ss_dssp TTSSCCEEEECCSSC-------CCTTCEEEE
T ss_pred CCCCCEEEEEECCCC-------CCCCCEEEE
T ss_conf 799986799974777-------898338999
No 168
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=43.94 E-value=12 Score=15.02 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
Q ss_conf 7888877321114777505888877653058899
Q gi|254780788|r 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 (526)
Q Consensus 372 iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~ 405 (526)
-.+.+.++||.+++.+...+.++|..+ |+....
T Consensus 21 Y~~~F~~~g~~~~~~l~~lt~~dL~~l-gI~~gH 53 (80)
T 1dxs_A 21 CIEYFTSQGLQSIYHLQNLTIEDLGAL-KIPEQY 53 (80)
T ss_dssp SHHHHHTTTCCCHHHHHTCCHHHHHHT-TCCTTT
T ss_pred HHHHHHHCCCCCHHHHHCCCHHHHHHC-CCCHHH
T ss_conf 999999848865688870599999771-999999
No 169
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=43.74 E-value=12 Score=15.00 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 8999999987984788965326775212
Q gi|254780788|r 445 SKIKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 445 ~~~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
...+..+.++||.+++.|+.++-++|.+
T Consensus 36 ~qY~~~F~~~g~d~~~~L~~lt~~dL~~ 63 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQ 63 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHCCCCHHHHHH
T ss_conf 9999999996998637655188975988
No 170
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A*
Probab=43.58 E-value=12 Score=14.99 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH-----HHHC
Q ss_conf 21114777505888877653058899999999999999999999898775428435664077999899999-----9987
Q gi|254780788|r 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA-----LGEN 454 (526)
Q Consensus 380 Gf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~-----L~e~ 454 (526)
-|-|.+.++.++.++|..+ |+....+.-|+.-|+.+..... ...........-+.|+.++|+.+-.+.. |+.-
T Consensus 154 ~fPtp~~la~~~~~~Lr~~-Gls~~ka~~i~~lA~~~~~g~l-~~~~~~~~ee~~~~L~~l~GIGpWTA~~vll~~lg~~ 231 (282)
T 1mpg_A 154 CFPTPQRLAAADPQALKAL-GMPLKRAEALIHLANAALEGTL-PMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp CCCCHHHHHTCCHHHHHHT-TSCHHHHHHHHHHHHHHHHTCS-CSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred CCCCHHHHHCCCHHHHHHC-CCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 7777999974999999654-8860479999999999974984-2134368899999999767988699999999976998
Q ss_pred CCCCHHHHH
Q ss_conf 984788965
Q gi|254780788|r 455 GIKTMEDLA 463 (526)
Q Consensus 455 gIktleDlA 463 (526)
++-..+|++
T Consensus 232 D~fp~~Dl~ 240 (282)
T 1mpg_A 232 DVFLPDDYL 240 (282)
T ss_dssp SCCCTTCHH
T ss_pred CCCCCHHHH
T ss_conf 838743499
No 171
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=43.37 E-value=12 Score=14.96 Aligned_cols=25 Identities=4% Similarity=-0.081 Sum_probs=11.9
Q ss_pred ECCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 1135870289871598899999999
Q gi|254780788|r 189 VRREQRGPQVLLSRTHPQFMVKLFH 213 (526)
Q Consensus 189 V~~~~rgpqi~lSRt~p~~l~~Lf~ 213 (526)
.+.+..+-.|..|--.|..++....
T Consensus 200 ~d~~~~~l~v~~~tQ~p~~~~~~vA 224 (769)
T 1rm6_A 200 YDPVRDMLTLNTTTQVPYYVHLKVA 224 (769)
T ss_dssp EETTTTEEEEEECCSCHHHHHHHHH
T ss_pred ECCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 6266417999908757378888765
No 172
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, seattle structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=43.22 E-value=4.5 Score=18.20 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=14.3
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCCEE
Q ss_conf 2778267995598789999976286654248
Q gi|254780788|r 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 (526)
Q Consensus 269 L~gEkIDii~ws~d~~~fi~nAl~PA~v~~v 299 (526)
.-|.=+|++..++.| +.|..|.++
T Consensus 86 ~DgDPLDvlvl~~~~-------~~~G~vv~~ 109 (196)
T 3gvf_A 86 GDGDPVDVLVITPFP-------LLAGSVVRA 109 (196)
T ss_dssp TTSSCCEEEECCSSC-------CCTTCEEEE
T ss_pred CCCCCEEEEEECCCC-------CCCCEEEEE
T ss_conf 899954899971532-------378408999
No 173
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=42.99 E-value=4.5 Score=18.16 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHHHCCEEEEEEEECCCCCEEEEEEEECCC--CCCC----EEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 6777558087856631677503499994089--9881----276554886217889986277826799559878999997
Q gi|254780788|r 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS--SIDP----VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 (526)
Q Consensus 216 VPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~--~iDp----VGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~n 289 (526)
.|++.+-+|||- .|+|.|.-+-.... ++|. -..+-+.-|.-=|.. +--|.=+|++..++.|
T Consensus 9 ~p~~vn~vIEIP-----~gs~~KyE~d~~~g~~~~dr~l~~~~~yP~nYGfIP~T~--~~DgDPLDvlvl~~~~------ 75 (173)
T 1qez_A 9 APDVVNVLVEIP-----QGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTL--EEDGDPLDVLVITNYQ------ 75 (173)
T ss_dssp TTTSEEEEEEEC-----TTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCC--CTTSSCCEEEECCSSC------
T ss_pred CCCEEEEEEEEC-----CCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECCCC------
T ss_conf 998689999968-----999767998367897778851266776887643335742--6899962799980643------
Q ss_pred HCCCCCCCEE
Q ss_conf 6286654248
Q gi|254780788|r 290 ALRPAIVTKV 299 (526)
Q Consensus 290 Al~PA~v~~v 299 (526)
+.|..|+.+
T Consensus 76 -~~~G~vv~~ 84 (173)
T 1qez_A 76 -LYPGSVIEV 84 (173)
T ss_dssp -CCTTCEEEE
T ss_pred -CCCCEEEEE
T ss_conf -799259999
No 174
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=42.75 E-value=9.5 Score=15.82 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 321114777505888877653058899999999999999999999898775428---43566407799989999999879
Q gi|254780788|r 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG---VSEELCSIPGIDSKIKVALGENG 455 (526)
Q Consensus 379 eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~---~~e~L~~l~gl~~~~~~~L~e~g 455 (526)
..|-|.+.++.++.++|... ||..-.+..|+.-|+... ...+..+. ..+.|+.++|+.+-.+....-.+
T Consensus 159 ~~fPtp~~la~~~~~~L~~~-Gl~~~Ka~~i~~lA~~~~-------~~~l~~~~~~e~~~~L~~i~GIGpWTA~~ill~~ 230 (295)
T 2jhn_A 159 YGFPTQEAILKAGVEGLREC-GLSRRKAELIVEIAKEEN-------LEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIA 230 (295)
T ss_dssp ECCCCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHTCSS-------GGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHCCCHHHHHHC-CCCHHHHHHHHHCCCCCC-------HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 37999999984999999778-973889999985011355-------5654128858888899845994889999999981
No 175
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus HB8} SCOP: b.40.5.1
Probab=42.73 E-value=4.6 Score=18.11 Aligned_cols=70 Identities=26% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHCCEEEEEEEECCCCCEEEEEEEECCC--CCCCEE--E--EECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 6777558087856631677503499994089--988127--6--554886217889986277826799559878999997
Q gi|254780788|r 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS--SIDPVG--A--CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 (526)
Q Consensus 216 VPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~--~iDpVG--A--cVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~n 289 (526)
-|++.+-+|||- .|+|+|..+-.... .+|-+- + +-+.-|.==|.. +--|.-+|++..++.|
T Consensus 12 ~p~~vn~viEIP-----~gs~~K~E~d~~~g~~~~dr~l~~~~~yP~nYGfiP~T~--~~DgDPLDvlvl~~~~------ 78 (174)
T 2prd_A 12 APEVVHMVIEVP-----RGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTL--AEDGDPLDGLVLSTYP------ 78 (174)
T ss_dssp TTTEEEEEEEEC-----TTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCC--CTTSSCCEEEEECSSC------
T ss_pred CCCEEEEEEEEC-----CCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCEECCCC--CCCCCCEEEEEEECCC------
T ss_conf 998799999979-----999854798666597677622586774887630026655--7899971899870665------
Q ss_pred HCCCCCCCEE
Q ss_conf 6286654248
Q gi|254780788|r 290 ALRPAIVTKV 299 (526)
Q Consensus 290 Al~PA~v~~v 299 (526)
+.|..+.++
T Consensus 79 -~~~G~vv~~ 87 (174)
T 2prd_A 79 -LLPGVVVEV 87 (174)
T ss_dssp -CCTTCEEEE
T ss_pred -CCCCCEEEE
T ss_conf -688667999
No 176
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=42.34 E-value=13 Score=14.85 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE---ECCCCCE
Q ss_conf 9999999999999999996136874535999---7499883
Q gi|254780788|r 22 IDRDVVLSVMADSIQKAARSLYGTMSDIRVE---INPETGD 59 (526)
Q Consensus 22 I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~---iD~~tG~ 59 (526)
+|++.+.+|+++++..+-+++|.+..++.+. +|++.++
T Consensus 1 ~d~~~i~~ai~~~~~~~k~rkF~esvel~v~L~~id~~k~~ 41 (219)
T 1i2a_A 1 MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPE 41 (219)
T ss_dssp CCHHHHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTTSGG
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 97899999999999867655887449999945777888766
No 177
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A
Probab=42.07 E-value=4.8 Score=17.99 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=16.2
Q ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHH
Q ss_conf 87765305-88999999999999999
Q gi|254780788|r 394 EIASIEGF-DEETAVEIQGRAREYLE 418 (526)
Q Consensus 394 eL~~IeGf-dee~a~eL~~rA~~~L~ 418 (526)
....+.|| |.+.|.+++.++.+...
T Consensus 143 k~v~v~g~~d~~~A~~iI~~~~~~yk 168 (172)
T 1sxv_A 143 KFVKAADWVDRAEAEAEVQRSVERFK 168 (172)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 87988875699999999999999998
No 178
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=40.88 E-value=5.1 Score=17.77 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=15.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCCEE
Q ss_conf 2778267995598789999976286654248
Q gi|254780788|r 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 (526)
Q Consensus 269 L~gEkIDii~ws~d~~~fi~nAl~PA~v~~v 299 (526)
--|.-+|++..++.| +.|..|.++
T Consensus 64 ~DgDPLDvivl~~~~-------~~~G~vv~~ 87 (175)
T 2au7_A 64 LDGDPVDVLVPTPYP-------LQPGSVTRC 87 (175)
T ss_dssp TTSSCCEEEECCSSC-------CCTTCEEEE
T ss_pred CCCCCCEEEEECCCC-------CCCEEEEEE
T ss_conf 899981799970777-------888128999
No 179
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=39.66 E-value=14 Score=14.57 Aligned_cols=116 Identities=8% Similarity=-0.059 Sum_probs=70.0
Q ss_pred CCCCEECHHHHHHHCCCC-CCCCEEEEECCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 875323489998628898-6473799850845-62079999999999999999998877999985208389999984057
Q gi|254780788|r 74 NYTCQISLKVARDRDPSI-DIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 (526)
Q Consensus 74 d~~~eI~l~~A~~~~~~~-~iGD~i~~~i~~~-~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~ 151 (526)
....+-+++-+++.+++. .+.-+.-.|-+|. .+...-....|+--..++++..++.....++..+|..+.-.|...+.
T Consensus 170 ~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~a~~~~~~v~~~~k~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~ 249 (304)
T 2qgq_A 170 EEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEG 249 (304)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 89999999999856978330024256699766663678997999999999999987654577898569299999993518
Q ss_pred CEEEEEECCCEEEEEHHHC--CCCCCCCCCCEEEEEEEEECCC
Q ss_conf 6389995793587447874--8875115276699999761135
Q gi|254780788|r 152 GNVIVDLGNSDGVIRRDET--ISRENLRPGDRVKSYIYDVRRE 192 (526)
Q Consensus 152 ~~iiVdlg~~ea~Lp~~e~--ip~E~~~~Gdrika~i~~V~~~ 192 (526)
+.++ |++.+..|.-.. ..+...++|+-+++-|.+....
T Consensus 250 ~~~~---Gr~~~~~p~~~~vv~~~~~~~~G~~v~v~I~~~~~~ 289 (304)
T 2qgq_A 250 KFLV---GRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEY 289 (304)
T ss_dssp TEEE---EEETTCCTTTSCCEEEESCCCTTCEEEEEEEEEETT
T ss_pred CEEE---EECCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCC
T ss_conf 9999---888887855634796089878999899999976255
No 180
>1m3q_A 8-oxoguanine DNA glycosylase; DNA repair, END product, HOGG, 8-aminoguanine, RE-ligation, hydrolase/DNA complex; HET: DRZ ANG; 1.90A {Homo sapiens} SCOP: a.96.1.3 d.129.1.2 PDB: 1m3h_A* 1n39_A* 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 1fn7_A* 1n3a_A* 1n3c_A* 1ebm_A* 1ko9_A 2noe_A* 2noh_A* 2nol_A* 3ktu_A* 1yqk_A 2noz_A* 2nof_A* 1yqr_A* 1yql_A* ...
Probab=38.82 E-value=14 Score=14.48 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---CCHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 321114777505888877653058899999999999999999-9998987754---284356640779998999999987
Q gi|254780788|r 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI-DITLQKKIRE---LGVSEELCSIPGIDSKIKVALGEN 454 (526)
Q Consensus 379 eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~-~~~~~e~~~e---~~~~e~L~~l~gl~~~~~~~L~e~ 454 (526)
-.|-|.+.++.++++++..--|+.- .+.-++..|+.++... .....+.+.. ....+.|+.++|+.+.++....-.
T Consensus 171 ~~FPtp~~L~~~~~e~~lr~~g~g~-Ra~~i~~~a~~~~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~wtAd~ilLf 249 (317)
T 1m3q_A 171 HGFPSLQALAGPEVEAHLRKLGLGY-RARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLM 249 (317)
T ss_dssp ECCCCHHHHTSTTHHHHHHHTTCTT-HHHHHHHHHHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 4789999997368899998626368-999999999999853444046998853557999999985489488999999998
Q ss_pred CCCCHH
Q ss_conf 984788
Q gi|254780788|r 455 GIKTME 460 (526)
Q Consensus 455 gIktle 460 (526)
+....|
T Consensus 250 ~lg~~d 255 (317)
T 1m3q_A 250 ALDKPQ 255 (317)
T ss_dssp HSCCTT
T ss_pred HCCCCC
T ss_conf 579998
No 181
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=38.43 E-value=15 Score=14.44 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=35.3
Q ss_pred EEEEEEECC--CCEEEEEECCCEEE-EE-------HHHCCCCCCCCCCCEEEEEEEE
Q ss_conf 999998405--76389995793587-44-------7874887511527669999976
Q gi|254780788|r 142 ISGTVKRVE--YGNVIVDLGNSDGV-IR-------RDETISRENLRPGDRVKSYIYD 188 (526)
Q Consensus 142 v~G~V~r~e--~~~iiVdlg~~ea~-Lp-------~~e~ip~E~~~~Gdrika~i~~ 188 (526)
.+|+|.+++ .+.+.++-|.+.++ +| -.+-..-..+++||+|++-+..
T Consensus 10 ~~G~V~~vd~~~~~iti~H~~Ip~l~wPaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~ 66 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEE
T ss_conf 889999985789989997777130799864888685896787369999999999998
No 182
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis}
Probab=38.41 E-value=3.5 Score=18.97 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEE-CCCCCEEEEEECC
Q ss_conf 7889986277826799559878999997628665424898-7567879999853
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~-de~~~~~~v~v~~ 314 (526)
++.+++.|+...++ +.||+|+-.|+||.+.=--....-- ........|-||.
T Consensus 118 ~~~i~~~l~~~g~~-~~iS~daG~YlCN~~~Y~sL~~~~~~~~~~~~~FiHvP~ 170 (215)
T 3lac_A 118 MKAIVKKLQEEGIP-ASVSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIPF 170 (215)
T ss_dssp HHHHHHHHHHTTCC-EEEESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEECC
T ss_pred HHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999998854998-487578620177799999999999848998179998589
No 183
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=38.36 E-value=15 Score=14.43 Aligned_cols=40 Identities=20% Similarity=0.506 Sum_probs=23.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
Q ss_conf 112258884678888773211147775058888776530588
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfde 403 (526)
+.+.++..+ -++.+..+||.+++.+...+.++|..+ |+..
T Consensus 18 WL~~igl~~-Y~~~F~~~g~~~~~~l~~l~~~dL~~l-GI~~ 57 (78)
T 1v38_A 18 FLERIHLQE-YTSTLLLNGYETLDDLKDIKESHLIEL-NIAD 57 (78)
T ss_dssp HHHTTTCGG-GHHHHHHHTCCBHHHHTTCCHHHHHHT-TTCC
T ss_pred HHHHCCHHH-HHHHHHHCCCCCHHHHCCCCHHHHHHC-CCCC
T ss_conf 999886399-999999959872475245999999885-9998
No 184
>3nrz_C Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3eub_C* 3b9j_C* 1fiq_C* 3etr_C* 3ns1_C*
Probab=36.55 E-value=16 Score=14.23 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=8.8
Q ss_pred CCEEEEEEECCCHHHHHHHH
Q ss_conf 87028987159889999999
Q gi|254780788|r 193 QRGPQVLLSRTHPQFMVKLF 212 (526)
Q Consensus 193 ~rgpqi~lSRt~p~~l~~Lf 212 (526)
..+..|..|--.|.+++..+
T Consensus 187 ~g~l~v~~~tQ~p~~~r~~l 206 (756)
T 3nrz_C 187 EGEMELFVSTQNAMKTQSFV 206 (756)
T ss_dssp TTCEEEEECCSCHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH
T ss_conf 76058993787625789999
No 185
>3d53_A Inorganic pyrophosphatase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, hydrolase, magnesium; 2.20A {Rickettsia prowazekii str} PDB: 3emj_A*
Probab=36.48 E-value=8.9 Score=16.00 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=16.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCCEE
Q ss_conf 778267995598789999976286654248
Q gi|254780788|r 270 RDEKIDIVVWSPDSATFVINALRPAIVTKV 299 (526)
Q Consensus 270 ~gEkIDii~ws~d~~~fi~nAl~PA~v~~v 299 (526)
-|.-+|++..++.| +.|..|.++
T Consensus 66 DgDPLDv~vl~~~~-------~~~G~vv~~ 88 (173)
T 3d53_A 66 DGDPVDVLVVAHHP-------VVPGSVIKC 88 (173)
T ss_dssp TSSCCEEEECCSSC-------CCTTCEEEE
T ss_pred CCCCCEEEEECCCC-------CCCCEEEEE
T ss_conf 79972499975624-------489239996
No 186
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=35.68 E-value=16 Score=14.14 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=9.1
Q ss_pred EEEEECCCCCEEEEEE
Q ss_conf 5999749988399999
Q gi|254780788|r 49 IRVEINPETGDISLFR 64 (526)
Q Consensus 49 i~V~iD~~tG~i~i~~ 64 (526)
+-+.+|+..|.+++|.
T Consensus 219 ~~A~~d~~~g~l~v~~ 234 (803)
T 1ffv_B 219 CVASFDPIKGDLTTYI 234 (803)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCEEEEE
T ss_conf 8999827899189995
No 187
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=35.56 E-value=16 Score=14.13 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=33.6
Q ss_pred EEEEEECCCC------CCCCCCCCHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 7999985342------211025442789999986167457855220
Q gi|254780788|r 307 RIEVIVPKEQ------LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 (526)
Q Consensus 307 ~~~v~v~~~q------ls~AIGk~GqNvrLas~Ltg~~idi~~~~~ 346 (526)
+-.|.||-++ .-+-||-+|.+.|---+-||.+|-|....-
T Consensus 8 ~~Ki~IP~~~~P~fNfvG~IlGPrG~t~K~le~eTg~kI~IrGrGS 53 (131)
T 1k1g_A 8 SDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGS 53 (131)
T ss_dssp EEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTT
T ss_pred EEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEECCC
T ss_conf 8999717666899872537766985279999998798899970476
No 188
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=35.27 E-value=16 Score=14.09 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-HHHHH-HHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 0001112258884678888773-21114-777505888877653058899999999
Q gi|254780788|r 358 RTQFFMQAINVDEIIAHLLVAE-GFADV-EELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 358 ~~~~f~e~LdVDE~iA~~LV~e-Gf~Si-EeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
....|...=+|...+|-.+.+. ....+ ..|+.-+..-|..++|+...+|+.|.-
T Consensus 70 lF~~Li~V~GIGpK~Al~ILs~~~~~~l~~aI~~~D~~~L~~vpGIGkKtAerIil 125 (191)
T 1ixr_A 70 LFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 99998576883778898887259999999999839999950188846889999999
No 189
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.98 E-value=17 Score=13.95 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHCCCHH
Q ss_conf 846788887732111477--750588887765305889
Q gi|254780788|r 369 DEIIAHLLVAEGFADVEE--LACVKISEIASIEGFDEE 404 (526)
Q Consensus 369 DE~iA~~LV~eGf~SiEe--Ia~a~~eeL~~IeGfdee 404 (526)
....++.+..-|+.-+-- -..-+.++-...-|+|.+
T Consensus 16 ~P~t~~vF~~~Gi~C~gc~~a~~~tL~eaa~~~gid~~ 53 (76)
T 2k53_A 16 DRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDAD 53 (76)
T ss_dssp CGGGHHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHH
T ss_conf 98699999986998857877666709999999497999
No 190
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=33.44 E-value=6.3 Score=17.12 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=14.9
Q ss_pred HCCCCEEEEECCCCHHHHHHHHCCCCCCCEE
Q ss_conf 2778267995598789999976286654248
Q gi|254780788|r 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 (526)
Q Consensus 269 L~gEkIDii~ws~d~~~fi~nAl~PA~v~~v 299 (526)
.-|.=+|++..++.| +.|..|.++
T Consensus 63 ~DgDPLDvivl~~~~-------~~~G~vi~~ 86 (173)
T 2bqx_A 63 SDGDPVDALVLSDVA-------FQAGSVVKA 86 (173)
T ss_dssp TTSSCCEEEECCSSC-------CCTTCEEEE
T ss_pred CCCCCEEEEEECCCC-------CCCCCEEEE
T ss_conf 689970799963554-------689518999
No 191
>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=33.11 E-value=18 Score=13.85 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHH
Q ss_conf 6788887732111477750588887765---3058899999999999999999999898775428435664077999899
Q gi|254780788|r 371 IIAHLLVAEGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447 (526)
Q Consensus 371 ~iA~~LV~eGf~SiEeIa~a~~eeL~~I---eGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~ 447 (526)
.....|.. -|-|+++++.++.++|..+ -||-.-.|..|++-|+.++. + .-++|+.|+|+.+-.
T Consensus 51 ~v~~~l~~-~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~~a~~~vp----------~---~~~~l~~LpGVG~yt 116 (155)
T 1ngn_A 51 PVLWEFLE-KYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLT----------K---QWRYPIELHGIGKYG 116 (155)
T ss_dssp HHHHHHHH-HSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH----------S---CCSSGGGSTTCCHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----------H---HHHCCCCCCCCCHHH
T ss_conf 99999999-888999998734999999972002687999999999716654----------4---233167589821999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780788|r 448 KVA 450 (526)
Q Consensus 448 ~~~ 450 (526)
+..
T Consensus 117 ad~ 119 (155)
T 1ngn_A 117 NDS 119 (155)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 192
>3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482}
Probab=32.02 E-value=12 Score=15.11 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=31.2
Q ss_pred EEECCCCHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHC
Q ss_conf 655488621788998627782679955--987899999762
Q gi|254780788|r 253 ACVGMRGSRVQAVVTELRDEKIDIVVW--SPDSATFVINAL 291 (526)
Q Consensus 253 AcVG~rGsRiq~I~~EL~gEkIDii~w--s~d~~~fi~nAl 291 (526)
.-|-..=.|+.+..+-|.+..|+|-+| +.+|..|+.|+.
T Consensus 23 p~vd~~L~~~aa~~~~lk~~gv~v~R~nL~~~P~~F~~N~~ 63 (106)
T 3ktb_A 23 TNINPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKT 63 (106)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCCEEEETTTCTTHHHHSHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCHH
T ss_conf 88698999999999999967947997543359798873799
No 193
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens}
Probab=31.97 E-value=18 Score=13.72 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHCCCCCHHHHHHCCHHHHCC
Q ss_conf 99999987984788965326775212
Q gi|254780788|r 447 IKVALGENGIKTMEDLAGCSVDDLLG 472 (526)
Q Consensus 447 ~~~~L~e~gIktleDlAels~dEL~~ 472 (526)
..-.+.++|+.++++|..++.++|.+
T Consensus 36 Y~~~F~~~g~~~~~~l~~l~~~dL~~ 61 (86)
T 3kka_C 36 YTEHFMAAGYTAIEKVVQMTNDDIKR 61 (86)
T ss_dssp GHHHHHHTTCCSHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf 99999984988689997689999988
No 194
>3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A {Thermococcus thioreducens} PDB: 1ude_A 1twl_A
Probab=31.83 E-value=8.7 Score=16.07 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=15.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCCEE
Q ss_conf 778267995598789999976286654248
Q gi|254780788|r 270 RDEKIDIVVWSPDSATFVINALRPAIVTKV 299 (526)
Q Consensus 270 ~gEkIDii~ws~d~~~fi~nAl~PA~v~~v 299 (526)
.|.-+|++..++.| +.|..|.++
T Consensus 66 DgDPLDvlvl~~~~-------~~~G~vv~~ 88 (178)
T 3i98_A 66 DGDPFDIMVIMREP-------VYPLTIIEA 88 (178)
T ss_dssp TSSCCEEEECCSSC-------CCTTCEEEE
T ss_pred CCCCCEEEEECCCC-------CCCCCEEEE
T ss_conf 99986799964863-------478447999
No 195
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=31.21 E-value=19 Score=13.64 Aligned_cols=36 Identities=11% Similarity=0.299 Sum_probs=18.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 1122588846788887732111477750588887765
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~I 398 (526)
+.+.++..+ -++.+..+||++++.+...+.++|.++
T Consensus 32 WL~~igL~~-Y~~~F~~~gi~~~~~l~~lt~~DL~~l 67 (100)
T 2kg5_A 32 WLATVHLEQ-YADTFRRHGLATAGAARGLGHEELKQL 67 (100)
T ss_dssp HHGGGTCGG-GHHHHHHTTCCBHHHHTTCCHHHHHHH
T ss_pred HHHHCCCHH-HHHHHHHCCCCCHHHHHHCCHHHHHHC
T ss_conf 999884299-999999969983999977779789985
No 196
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A*
Probab=31.18 E-value=19 Score=13.63 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHH--HHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 258884678888773--211147775-05888877653058899999999999
Q gi|254780788|r 365 AINVDEIIAHLLVAE--GFADVEELA-CVKISEIASIEGFDEETAVEIQGRAR 414 (526)
Q Consensus 365 ~LdVDE~iA~~LV~e--Gf~SiEeIa-~a~~eeL~~IeGfdee~a~eL~~rA~ 414 (526)
-.+|...+++.|-.. |..|+.++. ..+.+.|....| ..+...|...|+
T Consensus 246 LpGIG~~~~~kL~~~~~Gi~ti~DL~~~~~~~~L~~~fG--~~~g~~l~~~~r 296 (434)
T 2aq4_A 246 LPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVG--SKLGMKIHLALQ 296 (434)
T ss_dssp STTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHC--SSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCEEHHHHHHHCCHHHHHHHHC--CHHHHHHHHHHC
T ss_conf 668678999999987658807999763282989999967--489999999971
No 197
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=30.62 E-value=19 Score=13.57 Aligned_cols=40 Identities=13% Similarity=0.338 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf 111225888467888877321114777505888877653058
Q gi|254780788|r 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 (526)
Q Consensus 361 ~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfd 402 (526)
.+...++.++ -+...+.+||.+.+.+.+.+.++|..+ |+.
T Consensus 20 ~WL~~igL~~-Y~~~F~~~g~i~~~~L~~L~~~dL~~l-GI~ 59 (85)
T 1ow5_A 20 LFLEEIGCTQ-YLDSFIQCNLVTEEEIKYLDKDILIAL-GVN 59 (85)
T ss_dssp HHHHHHSCTH-HHHHHHHHTCCCHHHHHHCCHHHHHHH-TCC
T ss_pred HHHHHCCCHH-HHHHHHHCCCCCHHHHHHCCHHHHHHC-CCC
T ss_conf 9999984499-999999848873999673899999785-999
No 198
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=30.17 E-value=19 Score=13.51 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=18.9
Q ss_pred EEEEEEECCCCEEEEEECCC--EEEEEHHHCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 99999840576389995793--5874478748875115276699999761135
Q gi|254780788|r 142 ISGTVKRVEYGNVIVDLGNS--DGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 (526)
Q Consensus 142 v~G~V~r~e~~~iiVdlg~~--ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~ 192 (526)
+.|+|.....+.+++|.|++ +-++|.+-.- .++.|+.++.|+.-+-++
T Consensus 21 l~G~i~~~~~~~vvldv~GvGY~v~v~~~~~~---~l~~g~~v~l~t~~~vrE 70 (212)
T 2ztd_A 21 VRGEVLEVALDHVVIEAAGVGYRVNATPATLA---TLRQGTEARLITAMIVRE 70 (212)
T ss_dssp EEEEEEEECSSEEEEEETTEEEEEECCHHHHT---TCCTTSEEEEEEEEEEET
T ss_pred EEEEEEEECCCEEEEEECCEEEEEEECHHHHH---HCCCCCEEEEEEEEEECC
T ss_conf 99999996399899997998899994689998---769998599999999816
No 199
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=29.78 E-value=20 Score=13.47 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCHHHHHH-HHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 3211147775058888776-530--588999999999999999999998987754--2843566407799989999999
Q gi|254780788|r 379 EGFADVEELACVKISEIAS-IEG--FDEETAVEIQGRAREYLEGIDITLQKKIRE--LGVSEELCSIPGIDSKIKVALG 452 (526)
Q Consensus 379 eGf~SiEeIa~a~~eeL~~-IeG--fdee~a~eL~~rA~~~L~~~~~~~~e~~~e--~~~~e~L~~l~gl~~~~~~~L~ 452 (526)
.-|-|+++++.++.+++.. |.+ |-.-.+..|+..|+..++ .... ...-++|+.|+|+.+.++....
T Consensus 60 ~~~p~~~~la~a~~~el~~~i~~~g~y~~ka~~i~~~a~~i~~--------~~~g~vP~~~~~L~~LpGVG~kTA~~il 130 (226)
T 1orn_A 60 EKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLID--------KYNGEVPRDRDELMKLPGVGRKTANVVV 130 (226)
T ss_dssp HHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHH--------HSTTSCCSCHHHHTTSTTCCHHHHHHHH
T ss_pred HHCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--------HHCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 7139999986389989989887422199999999999999999--------9299798789999748775367999999
No 200
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=29.14 E-value=20 Score=13.39 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=14.6
Q ss_pred EEEEEEC-CCCCCCCCCCCHHHHH
Q ss_conf 7999985-3422110254427899
Q gi|254780788|r 307 RIEVIVP-KEQLSLAIGRRGQNVR 329 (526)
Q Consensus 307 ~~~v~v~-~~qls~AIGk~GqNvr 329 (526)
.+.++|+ +.|....||++|+..+
T Consensus 232 ~~~i~v~~~sqk~iiiG~~G~~iK 255 (301)
T 1ega_A 232 NGLILVEREGQKKMVIGNKGAKIK 255 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHH
T ss_pred EEEEEEEECCCEEEEECCCCCHHH
T ss_conf 999999648946899928984189
No 201
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=29.06 E-value=20 Score=13.38 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHH--HHHHHCCHHHHHHHHCCCHHH
Q ss_conf 888467888877321114--777505888877653058899
Q gi|254780788|r 367 NVDEIIAHLLVAEGFADV--EELACVKISEIASIEGFDEET 405 (526)
Q Consensus 367 dVDE~iA~~LV~eGf~Si--EeIa~a~~eeL~~IeGfdee~ 405 (526)
.-....++.|..-|+.-+ -.-...+.++-...-|+|.+.
T Consensus 16 ~~~P~t~~vf~~~gi~C~~C~~~~~etleeaa~~hgiD~d~ 56 (73)
T 2k5e_A 16 QTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVED 56 (73)
T ss_dssp HHCTHHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHH
T ss_pred HHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHH
T ss_conf 88988999999859998678998756799999994979999
No 202
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=28.81 E-value=20 Score=13.35 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=8.5
Q ss_pred HHHCCCCCCHHHHHHHH
Q ss_conf 66407799989999999
Q gi|254780788|r 436 ELCSIPGIDSKIKVALG 452 (526)
Q Consensus 436 ~L~~l~gl~~~~~~~L~ 452 (526)
.+.+++ ||++-+.++-
T Consensus 787 r~~~lP-~tpe~v~~~~ 802 (809)
T 1n62_B 787 GHIQMP-HDAWRLWKVG 802 (809)
T ss_dssp CCCCSC-CCHHHHHHHH
T ss_pred CCCCCC-CCHHHHHHHH
T ss_conf 746589-8999999999
No 203
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=28.55 E-value=21 Score=13.32 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=41.6
Q ss_pred EECCCCCEEEEEEECCCHHHHHHHHHH--HHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHH-HH-
Q ss_conf 611358702898715988999999997--66777558087856631677503499994089988127655488621-78-
Q gi|254780788|r 188 DVRREQRGPQVLLSRTHPQFMVKLFHM--EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSR-VQ- 263 (526)
Q Consensus 188 ~V~~~~rgpqi~lSRt~p~~l~~Lf~~--EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsR-iq- 263 (526)
..+.+...-.|..|--.|.+++..... .+| ..||-|.+ -++|-+-|.|+.. ..
T Consensus 209 ~~d~~~~~l~v~~~tQ~p~~~~~~iA~~lglp------------------~~~VrV~~-----~~vGGgFG~K~~~~~~~ 265 (788)
T 1t3q_B 209 QYEWTTQQLILWTATQMPSFVRTMVAMFCAIP------------------EHLIEVRV-----PDVGGGFGQKAHLHPEE 265 (788)
T ss_dssp EEETTTTEEEEEECCSCHHHHHHHHHHHHTCC------------------GGGEEEEC-----CBCSCCTTTTSSCCHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC------------------HHHEEEEE-----CCCCCCCCCCCCCCCHH
T ss_conf 01355305999778766068888878870998------------------13618995-----77787567654334177
Q ss_pred ---HHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEE--EECCCCC
Q ss_conf ---899862778267995598789999976286654248--9875678
Q gi|254780788|r 264 ---AVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVG 306 (526)
Q Consensus 264 ---~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v--~~de~~~ 306 (526)
++..-.-|--+-+ .||- ...|....-.|+-..++ -+|.+.+
T Consensus 266 ~~aa~aa~~~grPVkl-~~sR-~e~~~~~~~r~~~~~~~~~~~d~dG~ 311 (788)
T 1t3q_B 266 LLVCLLSRALGRPVRW-IEDR-QENFLGATHAKQQRNEMGLAFDGDGR 311 (788)
T ss_dssp HHHHHHHHHHTSCEEE-ECCH-HHHHHHSCBBCCEEEEEEEEECTTCC
T ss_pred HHHHHHHHHHCCCEEE-ECCH-HHHHCCCCCCCCCCCCEEEEECCCCC
T ss_conf 8999999985998674-2355-45204576764211213200279988
No 204
>3ofo_C 30S ribosomal protein S3; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 3fih_C* 2wwl_C 3ofp_C
Probab=28.35 E-value=21 Score=13.30 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999976286654248987567879999853422110254427899999861
Q gi|254780788|r 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 (526)
Q Consensus 283 ~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Lt 335 (526)
..+|+.+-+..|.+.++.+.-......|.+--..-.+.||++|++++.-..+.
T Consensus 38 IR~~i~k~l~~agis~i~I~rt~~~~~I~I~~~~p~~iig~~g~~i~~l~~~l 90 (206)
T 3ofo_C 38 VRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp THHHHHHHTTTTTEEEEEBCCCSSCBCCEEEESSHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCHHHCCCHHHHHHHHHHH
T ss_conf 99999988776144314799658837999995476111136416799999999
No 205
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens}
Probab=28.34 E-value=21 Score=13.30 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=35.8
Q ss_pred EEEEEEEECCCC--EEEEEECCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 899999840576--3899957935874478748875115276699999761135
Q gi|254780788|r 141 IISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 (526)
Q Consensus 141 iv~G~V~r~e~~--~iiVdlg~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~ 192 (526)
--.|+|..+..| +|..+-+.-+-++..++.-....++.||+|.+.+..-.+.
T Consensus 8 r~~G~V~~~k~GfGFI~~~~~~~dvF~H~s~~~~~~~l~~G~~VeF~v~~~~~g 61 (89)
T 1x65_A 8 REMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLS 61 (89)
T ss_dssp CEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGGSCCCCTTCCEEECCBCCSSS
T ss_pred CEEEEEEEEECCEEEEEECCCCCCEEEEHHHCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 567999999595737876999966899934547999877899999999989898
No 206
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=28.10 E-value=21 Score=13.27 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHCCCCCCHHHHHH
Q ss_conf 1114777505888877653058899999999999999999-999898775428435664077999899999
Q gi|254780788|r 381 FADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI-DITLQKKIRELGVSEELCSIPGIDSKIKVA 450 (526)
Q Consensus 381 f~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~-~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~ 450 (526)
|-|.+.++..+.+.|... |+.- .+.-|..-|+.+.... ..+...........+.|+.++|+.+..+..
T Consensus 158 fPtp~~l~~~~~e~lr~~-g~g~-Ra~yI~~~A~~i~~g~~~l~~l~~~~~~e~~~~L~~i~GIG~wtAd~ 226 (290)
T 3i0w_A 158 FPTVDKLHEFTEKDFEEC-TAGF-RAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADC 226 (290)
T ss_dssp CCCHHHHTTCCHHHHHHT-TCGG-GHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHC-CHHH-HHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 899999975999999862-7598-99999999998843852288874377067999998679948899999
No 207
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1}
Probab=27.55 E-value=21 Score=13.20 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=36.0
Q ss_pred EEEEEEECC--CCE-EEEEECCCEEEEEHHHCCCC---CCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 999998405--763-89995793587447874887---5115276699999761135870289
Q gi|254780788|r 142 ISGTVKRVE--YGN-VIVDLGNSDGVIRRDETISR---ENLRPGDRVKSYIYDVRREQRGPQV 198 (526)
Q Consensus 142 v~G~V~r~e--~~~-iiVdlg~~ea~Lp~~e~ip~---E~~~~Gdrika~i~~V~~~~rgpqi 198 (526)
|.|+|+.++ +|+ .|..-++-+-++-.+..... ..++.|++|.+-+ ....||||-
T Consensus 1 v~G~Vk~f~~~KGfGFI~~~dg~DvFvH~s~l~~~~~~~~L~~G~~V~F~~---~~~~kG~~A 60 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDP---TPTPKGLAA 60 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEE---ECTTTSCEE
T ss_pred CEEEEEEEECCCCEEEEECCCCCEEEEEEEHHCCCCCCCCCCCCCEEEEEE---EECCCCCEE
T ss_conf 937999997999873886599988999940523546886369999999999---989999674
No 208
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=27.16 E-value=22 Score=13.15 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=15.3
Q ss_pred CEEEEEEEECCC-CEEE--EEEC------CCEEEEEHHHCCCC
Q ss_conf 389999984057-6389--9957------93587447874887
Q gi|254780788|r 140 EIISGTVKRVEY-GNVI--VDLG------NSDGVIRRDETISR 173 (526)
Q Consensus 140 eiv~G~V~r~e~-~~ii--Vdlg------~~ea~Lp~~e~ip~ 173 (526)
.++.+.+.|-.+ +..| +|.. ++-+++-.++ +|+
T Consensus 601 gmL~a~~vrsp~a~a~I~siD~s~A~~~pGVv~V~t~~D-ip~ 642 (1332)
T 1v97_A 601 NELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADD-IPG 642 (1332)
T ss_dssp TCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGG-CSS
T ss_pred CCEEEEEEECCCCCEEEEEEEHHHHHCCCCEEEEEEHHH-CCC
T ss_conf 978999980798985999962158643997699997144-388
No 209
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology, structural genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.59 E-value=22 Score=13.08 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=40.5
Q ss_pred CCCEEEEEEEECCCCE--EEEEECCCEEEEEHHHCCCC-CCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 0838999998405763--89995793587447874887-51152766999997611358702898715
Q gi|254780788|r 138 VGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISR-ENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 (526)
Q Consensus 138 ~Geiv~G~V~r~e~~~--iiVdlg~~ea~Lp~~e~ip~-E~~~~Gdrika~i~~V~~~~rgpqi~lSR 202 (526)
.+.--+|+|+.+..++ |..+-+.-+-++..++.-.+ ..+++|++|.+.+..-.+..|-.-+-+.|
T Consensus 15 ~~~r~~G~V~~~~~gfGFI~~~~g~~dvFfH~s~i~~~~~~l~~G~~V~F~v~~~~r~gk~~Av~V~~ 82 (89)
T 1wfq_A 15 AALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVK 82 (89)
T ss_dssp CCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSCTTTCCTTCCEEEEEEECSSSCCEEEEEEEE
T ss_pred CCEEEEEEEEEEECCCCEEEECCCCCCEEEEEHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEE
T ss_conf 42178899999848202588079997699986042378862689999999999799899068788888
No 210
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, cytoplasm, hydrolase, protease, thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp}
Probab=25.93 E-value=6.6 Score=16.95 Aligned_cols=52 Identities=17% Similarity=0.037 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEECC
Q ss_conf 788998627782679955987899999762866542489-87567879999853
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPK 314 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~~ 314 (526)
+++++++|....+++ .||.|+-.|+||.+.=--....- -....+...|-||.
T Consensus 119 ~~~i~~~l~~~g~~~-~~S~daG~YlCN~~~Y~sl~~~~~~~~~~~~~FiHvP~ 171 (215)
T 3giu_A 119 VKAMTQSIINQGLPG-ALSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFIHVPY 171 (215)
T ss_dssp HHHHHHHHHHTTCCB-CCBSCCCSSHHHHHHHHHHHHHHHTCTTCEEEEEEECC
T ss_pred HHHHHHHHHHCCCCC-EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999999998679981-67378541077799999999998549997279997689
No 211
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=25.88 E-value=20 Score=13.47 Aligned_cols=38 Identities=11% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHH--HHHCCCCCCCEEEEE---CCCCCE
Q ss_conf 99999999999999999--961368745359997---499883
Q gi|254780788|r 22 IDRDVVLSVMADSIQKA--ARSLYGTMSDIRVEI---NPETGD 59 (526)
Q Consensus 22 I~~e~i~~aie~Al~~a--~kK~~~~~~~i~V~i---D~~tG~ 59 (526)
.+++.+.+|++.++... .+++|.+..++.+.+ |++.++
T Consensus 3 ~~~~~l~~ai~~~~~~~~~~krkF~esidl~i~Lk~iD~kk~~ 45 (217)
T 1mzp_A 3 ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGD 45 (217)
T ss_dssp CCHHHHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTT
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 7789999999999850535576987269999960687898776
No 212
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=25.65 E-value=23 Score=12.96 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=25.4
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH
Q ss_conf 653058899999999999999999999898775428435664077999899999
Q gi|254780788|r 397 SIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA 450 (526)
Q Consensus 397 ~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~ 450 (526)
.+|-+.+|.-.+|...|+...+.-.......+++ ..+.|..++|++++....
T Consensus 103 ~iP~lT~E~R~~l~K~ak~~~E~aK~~iR~iR~~--~~~~lKk~~~iseD~~k~ 154 (184)
T 1ge9_A 103 TLPPLTEERRRELVRLLHKITEEARVRVRNVRRE--AKEMIEELEGISEDEKKR 154 (184)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSTTCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHH
T ss_conf 6886449999999999888699999999998799--999888753798788888
No 213
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.89 E-value=24 Score=12.87 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCEEEEEEEECCCCEEEE--EECCCEEEEEHHHCCCC-CCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 838999998405763899--95793587447874887-511527669999976113587028
Q gi|254780788|r 139 GEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISR-ENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 139 Geiv~G~V~r~e~~~iiV--dlg~~ea~Lp~~e~ip~-E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
-.-.+|+|..+..|+=+| +-|.-+-++..++.-.+ ..+++|++|.+.+. ...+||+
T Consensus 16 ~~r~~G~I~~~k~GfGFI~~~~g~~diFfH~s~~~~~~~~l~~G~~V~F~~~---~~~~~~~ 74 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIK---DRNGKEV 74 (97)
T ss_dssp CCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSCTTSCCSCCEEEEEEC---CCSSSCB
T ss_pred CCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHHCCCCCCCCCCEEEEEEE---ECCCCCE
T ss_conf 6378899989938181897189995199994785066664889999999999---3899978
No 214
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=23.97 E-value=8.7 Score=16.07 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEECC
Q ss_conf 788998627782679955987899999762866542489-87567879999853
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPK 314 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~~ 314 (526)
+++++++|....+++ .+|.|+-.|+||.+.=.-..... .........|-||.
T Consensus 114 ~~~~~~~l~~~g~~v-~~S~daG~YlCN~~yY~sL~~~~~~~~~~~~~FiHvP~ 166 (206)
T 1iu8_A 114 TREIVEEMKKNGIPA-VLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVPY 166 (206)
T ss_dssp HHHHHHHHHHTTCCE-EEESCCCSSHHHHHHHHHHHHHHHHCCSSEEEEEEECB
T ss_pred HHHHHHHHHHCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999999888659982-68789875313699999999998638998799998389
No 215
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=23.72 E-value=25 Score=12.71 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
Q ss_conf 112258884678888773211147775058888776530588
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfde 403 (526)
+.+.++..+ -++....+||++++.+...+.++|.++ |+..
T Consensus 31 WL~~lgL~q-Y~~~F~~~g~d~~~~L~~lt~~dL~~L-GI~~ 70 (90)
T 3h8m_A 31 WLQAIKMER-YKDNFTAAGYNSLESVARMTIEDVMSL-GITL 70 (90)
T ss_dssp HHHHTTCGG-GHHHHHHTTCCSHHHHHTCCHHHHHHT-TCCC
T ss_pred HHHHCCHHH-HHHHHHHCCCCCHHHHHHCCHHHHHHC-CCCC
T ss_conf 998887299-999999869785999987999999883-9998
No 216
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=23.70 E-value=25 Score=12.71 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=23.2
Q ss_pred EEEEECCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCEEEE
Q ss_conf 99984057638999579358744787488751152766999
Q gi|254780788|r 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 (526)
Q Consensus 144 G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~E~~~~Gdrika 184 (526)
+.+.+...+.++.|||..-|..-....+..-.++.||.|+.
T Consensus 99 a~i~~~~~~~~i~Dl~S~nGt~vNg~~v~~~~L~~GD~i~i 139 (162)
T 2kfu_A 99 AEFRLENNEFNVVDVGSLNGTYVNREPVDSAVLANGDEVQI 139 (162)
T ss_dssp EEEEEETTEEEEECCCCSSCEEETTBCCSEEECCSSCEEEE
T ss_pred EEEEEECCEEEEEECCCCCCCEECCEECCCEECCCCCEEEE
T ss_conf 89998589599998998675189999996248999999999
No 217
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=23.67 E-value=25 Score=12.71 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=7.0
Q ss_pred HHCCCCHHHHHHHHH
Q ss_conf 623999999999999
Q gi|254780788|r 18 YEKSIDRDVVLSVMA 32 (526)
Q Consensus 18 ~EK~I~~e~i~~aie 32 (526)
+...-+++.|-+||.
T Consensus 117 ~~~~p~~~~i~~al~ 131 (907)
T 1dgj_A 117 ENVAPSREDVRDWFQ 131 (907)
T ss_dssp HCSSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHC
T ss_conf 699989999999864
No 218
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA0888, degradation of proteins and peptides, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=23.55 E-value=9 Score=15.98 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCC
Q ss_conf 7889986277826799559878999997628665424898756787999985342
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~q 316 (526)
++++++.|+...+++ .||+|+-.|+||.+.=--... .....+...+-||..+
T Consensus 114 ~~~l~~~l~~~g~~~-~~S~dAG~ylCN~~~Y~sL~~--~~~~~~~~FiHvP~~~ 165 (192)
T 2ebj_A 114 VKPVLARWREAGIPG-RPSLSAGSYLCNQAFYLSLYR--LPEEVPVGFLHLPPDE 165 (192)
T ss_dssp HHHHHHHHHHTTCCE-EEESCCCSSHHHHHHHHHHHH--SCTTSCEEEEEECCCH
T ss_pred HHHHHHHHHHCCCCC-EECCCCCCCCCHHHHHHHHHH--HCCCCCEEEEECCCCH
T ss_conf 999999988659980-571672112026999999998--4247965999838945
No 219
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=23.48 E-value=25 Score=12.68 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999986239999999999
Q gi|254780788|r 8 ELLQIADAVAYEKSIDRDVVLSV 30 (526)
Q Consensus 8 ell~vie~va~EK~I~~e~i~~a 30 (526)
..+.-++.+|+|||+++..++..
T Consensus 12 ~v~~~L~~~akekGlSKSalltv 34 (45)
T 2cpg_A 12 SVLENLEKMAREMGLSKSAMISV 34 (45)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999748519999999
No 220
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=22.44 E-value=9.8 Score=15.72 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEEC--CCCCCCCCCC
Q ss_conf 788998627782679955987899999762866542489-8756787999985--3422110254
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVP--KEQLSLAIGR 323 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~--~~qls~AIGk 323 (526)
+..++.+|....+++ .||+|+-.|+||.+.=--..... -........|-|| .+|..-++++
T Consensus 117 v~~i~~~l~~~g~~~-~~S~daG~YlCN~~~Y~sL~~~~~~~~~~~~~FiHvP~~~e~~~~~~~~ 180 (208)
T 1x10_A 117 IKKIMKKLHERGIPA-YISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIGK 180 (208)
T ss_dssp HHHHHHHHHHTTCCE-EEESCCCSSHHHHHHHHHHHHHHHHSCCSEEEEEEECBCGGGTHHHHTT
T ss_pred HHHHHHHHHHCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCC
T ss_conf 999999988619983-7878875320169999999999852899558999879973553034465
No 221
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=22.29 E-value=27 Score=12.52 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=27.3
Q ss_pred HHHHHHHHHCC---EEEEEECCCHHHHHHCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999986167---457855220011010012210001112-------25888467888877321114
Q gi|254780788|r 327 NVRLASQLTGW---TIDIITEEEDSINRQKDFNERTQFFMQ-------AINVDEIIAHLLVAEGFADV 384 (526)
Q Consensus 327 NvrLas~Ltg~---~idi~~~~~~~~~~~~e~~~~~~~f~e-------~LdVDE~iA~~LV~eGf~Si 384 (526)
-+|||-+++|| |++|+++...-.....|.-+.++.|++ +..=|-.+|+.|.+.|...+
T Consensus 84 ~A~lARE~~~t~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLed~Gc~av 151 (264)
T 1xm3_A 84 IARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAI 151 (264)
T ss_dssp HHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCB
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEE
T ss_conf 99999974499768999548987759884789999999997898799960789899999997699199
No 222
>2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.70 E-value=9 Score=15.97 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=12.3
Q ss_pred EECCCCC----CCCCCCCHHHHH
Q ss_conf 9853422----110254427899
Q gi|254780788|r 311 IVPKEQL----SLAIGRRGQNVR 329 (526)
Q Consensus 311 ~v~~~ql----s~AIGk~GqNvr 329 (526)
.+|++.+ +.+=|.|||||.
T Consensus 9 ~Ip~~ei~~~f~RSsGPGGQnVN 31 (148)
T 2jy9_A 9 SIADNELEITAIRAQGAGGQHVN 31 (148)
T ss_dssp CBCSTTCEEEEECCSCCCSSCSC
T ss_pred CCCHHHEEEEEEECCCCCCCCHH
T ss_conf 17879907888876899876311
No 223
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=21.45 E-value=28 Score=12.40 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=30.5
Q ss_pred EEEECCCC------CCCCCCCCHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 99985342------211025442789999986167457855220
Q gi|254780788|r 309 EVIVPKEQ------LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 (526)
Q Consensus 309 ~v~v~~~q------ls~AIGk~GqNvrLas~Ltg~~idi~~~~~ 346 (526)
.|.||-++ ..+-||-+|.+.|---+-||.+|-|.+..-
T Consensus 5 Ki~IP~~~~P~~NfvG~IiGPrG~t~k~le~eTg~kI~IRGrGS 48 (140)
T 2bl5_A 5 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGS 48 (140)
T ss_dssp EEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTS
T ss_pred EEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEECCC
T ss_conf 89678877999986358888997279999998798899983687
No 224
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=21.23 E-value=28 Score=12.37 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.0
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 853422110254427899999861
Q gi|254780788|r 312 VPKEQLSLAIGRRGQNVRLASQLT 335 (526)
Q Consensus 312 v~~~qls~AIGk~GqNvrLas~Lt 335 (526)
|-...|..--++.|.-.|+..+..
T Consensus 99 vRRAKLYYLR~~~GK~aRike~~~ 122 (166)
T 2zjr_M 99 VRRAKLYYLRELRGKAARIKSDRS 122 (166)
T ss_dssp CSSSCCGGGCC-------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 145666766337226777778775
No 225
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=21.19 E-value=28 Score=12.37 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=17.3
Q ss_pred CCEEEEEEEECCC-CEE--EEEE------CCCEEEEEHHH
Q ss_conf 8389999984057-638--9995------79358744787
Q gi|254780788|r 139 GEIISGTVKRVEY-GNV--IVDL------GNSDGVIRRDE 169 (526)
Q Consensus 139 Geiv~G~V~r~e~-~~i--iVdl------g~~ea~Lp~~e 169 (526)
..++.+.+.|-.+ +.. .+|. .++.+++.-.+
T Consensus 205 ~gmL~a~~~rsp~~~a~i~~iD~s~A~~~pGV~~vlt~~D 244 (907)
T 1vlb_A 205 AGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKD 244 (907)
T ss_dssp TTCEEEEEEECSSSSEEEEEEECHHHHTSTTEEEEECGGG
T ss_pred CCCEEEEECCCCCCCEEEEEEEHHHHHCCCCEEEEEECCC
T ss_conf 9848998567898981898867699734898599986555
No 226
>3kgk_A Arsenical resistance operon trans-acting repressor ARSD; alpha+beta, chaperone, DNA-binding, plasmid, transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=20.80 E-value=25 Score=12.68 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred ECCCCHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 5488621788998627782679955--98789999976286654248987567879999853422110254427899999
Q gi|254780788|r 255 VGMRGSRVQAVVTELRDEKIDIVVW--SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 (526)
Q Consensus 255 VG~rGsRiq~I~~EL~gEkIDii~w--s~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas 332 (526)
|-.-=.|+.+..+-|...-|+|-+| +.+|..|+.|+.-- ...-.+-....-+++-|.++-+ -|+.=.|--||.
T Consensus 22 vd~~L~~~aa~~~~lk~~gv~V~RyNL~~~P~aF~~N~~V~----~~L~~~G~~~LPl~lVDGeiv~-~G~YPt~~Ela~ 96 (110)
T 3kgk_A 22 VDQALVDFSTDVQWLKQSGVQIERFNLAQQPMSFVQNEKVK----AFIEASGAEGLPLLLLDGETVM-AGRYPKRAELAR 96 (110)
T ss_dssp --CHHHHHHHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHH----HHHHHHCGGGCCEEEETTEEEE-ESSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCHHHH----HHHHHCCCCCCCEEEECCEEEE-ECCCCCHHHHHH
T ss_conf 89899999999999997696699856756858887099999----9999669644898999999999-157989999999
Q ss_pred HHHCCEEEEEE
Q ss_conf 86167457855
Q gi|254780788|r 333 QLTGWTIDIIT 343 (526)
Q Consensus 333 ~Ltg~~idi~~ 343 (526)
.+ |-.+|.++
T Consensus 97 ~~-gi~~~~l~ 106 (110)
T 3kgk_A 97 WF-GIPLDKVG 106 (110)
T ss_dssp HH-TCCCCCC-
T ss_pred HH-CCCHHHCC
T ss_conf 96-98965714
No 227
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=20.62 E-value=29 Score=12.28 Aligned_cols=70 Identities=17% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHHHHCCHHHHHHH---HC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 477750588887765---30--588999999999999999999998987754284356640779998999999987
Q gi|254780788|r 384 VEELACVKISEIASI---EG--FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 (526)
Q Consensus 384 iEeIa~a~~eeL~~I---eG--fdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~gl~~~~~~~L~e~ 454 (526)
.+.++.++.++|.++ -| |-.-.|.-|.+.|+-..... .............+.|++++|+.+.++...--+
T Consensus 70 ~e~~~~~~~eel~~~ik~~G~~f~~~KAk~I~~~a~~~~~~~-l~~~~~~~~~~~~~~L~~l~GIG~ktA~~~L~~ 144 (214)
T 3fhf_A 70 GDGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKD-IVESFENEKVAREFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp TTHHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHH-HHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999986999999999999464567999999999999999988-889739989873999974888769999999999
No 228
>1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} SCOP: c.56.4.1
Probab=20.42 E-value=8.7 Score=16.07 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEE-CCCCCEEEEEECC
Q ss_conf 7889986277826799559878999997628665424898-7567879999853
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~-de~~~~~~v~v~~ 314 (526)
+.++++.|..+.+++ .||.|+-.|+||.+.=--....-- ........|-||.
T Consensus 119 ~~~l~~~l~~~g~~~-~~S~daG~YlCN~~~Y~sL~~~~~~~~~~~a~FvHvP~ 171 (215)
T 1aug_A 119 IKRIVEEIKKEGIPA-AVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPY 171 (215)
T ss_dssp HHHHHHHHHHTTCCB-CCBSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEECC
T ss_pred HHHHHHHHHHCCCCE-EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 999999888669986-87478763156799999999998738997289998489
No 229
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=20.38 E-value=11 Score=15.22 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEECC
Q ss_conf 788998627782679955987899999762866542489-87567879999853
Q gi|254780788|r 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPK 314 (526)
Q Consensus 262 iq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~~ 314 (526)
++++++.|....|++ .||.|+-.|+||.+.=--..-.- -....+...|-||.
T Consensus 118 ~~~i~~~l~~~gi~~-~iS~dAG~YlCN~~~Y~sL~~~~~~~~~~~agFIHvP~ 170 (220)
T 1a2z_A 118 VRAITKTLRDNGIPA-TISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPY 170 (220)
T ss_dssp HHHHHHHHHHTTCCE-EEESCCCSSHHHHHHHHHHHHHHHHCCCSEEEEEEECC
T ss_pred HHHHHHHHHHCCCCE-EEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 999999998659983-89288740076799999999999848997589998589
Done!