BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] (526 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] gi|254040465|gb|ACT57261.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/526 (100%), Positives = 526/526 (100%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI Sbjct: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ Sbjct: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD Sbjct: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA Sbjct: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV Sbjct: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ Sbjct: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI Sbjct: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN Sbjct: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS Sbjct: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 >gi|315122010|ref|YP_004062499.1| transcription elongation factor NusA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495412|gb|ADR52011.1| transcription elongation factor NusA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 536 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/525 (85%), Positives = 490/525 (93%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSIDRDVVLSVMA+SIQKAARSLYGT+SDIRVEIN ETG+I Sbjct: 2 VVSANRLELLQIADAVACEKSIDRDVVLSVMAESIQKAARSLYGTLSDIRVEINRETGNI 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ R LEVVEEVENY CQISL++ARDRDP+I+IG V+ DPLPP+DFGRVAVQSAKQVIIQ Sbjct: 62 SICRSLEVVEEVENYACQISLQLARDRDPNINIGDVLFDPLPPIDFGRVAVQSAKQVIIQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG+SDGVIRRDETISRENLR GD Sbjct: 122 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGHSDGVIRRDETISRENLRLGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+SYIYDVRREQRGPQVLLSRTHPQFMVKLF++EVPEIYNGIVQ+KAVSRDPGSRAKLA Sbjct: 182 RVRSYIYDVRREQRGPQVLLSRTHPQFMVKLFYLEVPEIYNGIVQIKAVSRDPGSRAKLA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVV ELRDEKIDIVVWSPD ATFVIN+LRPAIVTKVV Sbjct: 242 VFSSDSSIDPVGACVGMRGSRVQAVVGELRDEKIDIVVWSPDPATFVINSLRPAIVTKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEV+VPK+QLSLAIGRRGQNVRLASQLTGW IDI+TEEEDS+NRQK FNERTQ Sbjct: 302 LDEDVGRIEVVVPKDQLSLAIGRRGQNVRLASQLTGWAIDIVTEEEDSVNRQKHFNERTQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEII HLL AEGF+D+EELACVK+SEIASIEGFDEETA EIQGRAREY+EG+ Sbjct: 362 FFMQAINVDEIIGHLLAAEGFSDIEELACVKLSEIASIEGFDEETASEIQGRAREYMEGL 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++KI+ LGVSEEL SIPG++++I VALGENGIKTMEDLAGCSVDDLLGW E K G Sbjct: 422 EVARREKIKGLGVSEELFSIPGMNTEIGVALGENGIKTMEDLAGCSVDDLLGWGEVKNGK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +E F+GFLS LG K+Q ESMIIHARY +GWI +E +ADE V A Sbjct: 482 VENFEGFLSQLGVLKEQAESMIIHARYHLGWIVREDIADESVDCA 526 >gi|150398625|ref|YP_001329092.1| transcription elongation factor NusA [Sinorhizobium medicae WSM419] gi|150030140|gb|ABR62257.1| NusA antitermination factor [Sinorhizobium medicae WSM419] Length = 552 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/517 (68%), Positives = 439/517 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I Sbjct: 13 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 72 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 73 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 132 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 133 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 192 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV Sbjct: 193 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 252 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL Sbjct: 253 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 312 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 313 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 372 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA VEELA V + EIASIEGFDEET+ EIQ RAREYLE I+ Sbjct: 373 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEIASIEGFDEETSNEIQTRAREYLEKIE 432 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL +I G++S++ VALGE GIKT+ED AGC+ DDL+GW E K G Sbjct: 433 AEMDAKRKELGVADELRTINGLNSQMLVALGEEGIKTIEDFAGCAADDLVGWVERKDGET 492 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++F+G S L +++ E+MI+ AR GWI +E +A Sbjct: 493 KRFEGTFSKLEVTREEAEAMIVQARLAAGWITEEDLA 529 >gi|15963990|ref|NP_384343.1| transcription elongation factor NusA [Sinorhizobium meliloti 1021] gi|307306402|ref|ZP_07586146.1| NusA antitermination factor [Sinorhizobium meliloti BL225C] gi|307319289|ref|ZP_07598718.1| NusA antitermination factor [Sinorhizobium meliloti AK83] gi|15073166|emb|CAC41674.1| Probable N utilization substance protein A [Sinorhizobium meliloti 1021] gi|306895125|gb|EFN25882.1| NusA antitermination factor [Sinorhizobium meliloti AK83] gi|306902244|gb|EFN32841.1| NusA antitermination factor [Sinorhizobium meliloti BL225C] Length = 542 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/514 (68%), Positives = 436/514 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V++ EI+SIEGFDE+TA E+Q RAREYLE I+ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTRAREYLEKIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGVS+EL +I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDAKRKELGVSDELRTIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++F+G S +++ E+MI+ AR GWI +E Sbjct: 483 KRFEGIFSKFEVTREEAETMIVQARLAAGWITEE 516 >gi|227824069|ref|YP_002828042.1| transcription elongation factor NusA [Sinorhizobium fredii NGR234] gi|227343071|gb|ACP27289.1| transcription termination factor, NusA [Sinorhizobium fredii NGR234] Length = 536 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/517 (68%), Positives = 437/517 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ ++Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKADDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYEEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA VTKVVL Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVTKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RAREYL+ ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLDEISSIDGFDEETATEIQTRAREYLDKVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGVS+EL I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDAKRKELGVSDELRQIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++F+G S L +++ E+MI+ AR GWI +E +A Sbjct: 483 KRFEGTFSKLEVSREEAEAMIVQARLAAGWITEEDLA 519 >gi|222084328|ref|YP_002542857.1| N-utilization substance protein A [Agrobacterium radiobacter K84] gi|221721776|gb|ACM24932.1| N-utilization substance protein A [Agrobacterium radiobacter K84] Length = 534 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/519 (68%), Positives = 434/519 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A FV+NAL+PA V+KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSNEPANFVVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V++ EIASI+GFDEETA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAAVEELAYVELDEIASIDGFDEETAQEIQQRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV++EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVADELRQINGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +KF+G S L + + E MI+ AR GWI + +A+E Sbjct: 483 KKFEGLFSKLEISRVEAEQMIVQARLSAGWITEADLANE 521 >gi|86355778|ref|YP_467670.1| transcription elongation factor NusA [Rhizobium etli CFN 42] gi|86279880|gb|ABC88943.1| N-utilization substance protein A [Rhizobium etli CFN 42] Length = 533 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/517 (68%), Positives = 431/517 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDE+TA EIQ RAREYLE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDEKRKALGVKDELRQIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDLSRVEAEQMIVQARLAAGWITEEDLA 519 >gi|325291533|ref|YP_004277397.1| transcription elongation factor NusA [Agrobacterium sp. H13-3] gi|325059386|gb|ADY63077.1| transcription elongation factor NusA [Agrobacterium sp. H13-3] Length = 538 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/524 (67%), Positives = 436/524 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVETAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFD++TA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLGEISSIDGFDDDTADEIQTRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDAKRKELGVADELRQIEGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +KF+G S L + + E+M++ AR GWI E +A EE DA Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEDLASEEEVDA 526 >gi|209551640|ref|YP_002283557.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537396|gb|ACI57331.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 535 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/517 (68%), Positives = 431/517 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I GI +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGITAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITEEDLA 519 >gi|116249893|ref|YP_765731.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. viciae 3841] gi|115254541|emb|CAK05615.1| putative transcription elongation protein (N utilization substance protein A) (L factor) [Rhizobium leguminosarum bv. viciae 3841] Length = 533 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/517 (68%), Positives = 431/517 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDLA 519 >gi|241207071|ref|YP_002978167.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860961|gb|ACS58628.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 533 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/514 (68%), Positives = 429/514 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +KF+G S + + E MI+ AR GWI +E Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQE 516 >gi|190889787|ref|YP_001976329.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CIAT 652] gi|190695066|gb|ACE89151.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CIAT 652] gi|327192408|gb|EGE59368.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CNPAF512] Length = 533 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/517 (68%), Positives = 431/517 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDEKRKALGVEDELRGIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLA 519 >gi|15887443|ref|NP_353124.1| transcription elongation factor NusA [Agrobacterium tumefaciens str. C58] gi|15154956|gb|AAK85909.1| N-utilization substance protein A [Agrobacterium tumefaciens str. C58] Length = 538 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/516 (67%), Positives = 432/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA VEELA V + EI SI+GFDE+TA EIQ RAREYLE ++ Sbjct: 363 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDAKRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 +KF+G S L + + E+M++ AR GWI E++ Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEEL 518 >gi|163757748|ref|ZP_02164837.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43] gi|162285250|gb|EDQ35532.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43] Length = 550 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/516 (66%), Positives = 431/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++V++ MAD+IQKAARS YG+ S+IR +IN +TG+I Sbjct: 7 VSANRLELLQIADAVAREKSIDREIVIAAMADAIQKAARSRYGSESNIRADINAKTGEIK 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L +ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 67 LQRLLEVVEHAEDYSTQIPLMLARDRNPDAQLGDFIADPLPPMDFGRIAAQSAKQVIVQK 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD++GE+++GTVKRVEYGNVIVDLG +G++RRDETI RE R GDR Sbjct: 127 VREAERDRQFDEFKDRIGEVVNGTVKRVEYGNVIVDLGRGEGIVRRDETIPREAFRYGDR 186 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++++V+RDPGSRAK+AV Sbjct: 187 IRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIRSVARDPGSRAKIAV 246 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP ATF++NAL+PA V KVVL Sbjct: 247 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSPATFIVNALQPAEVAKVVL 306 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNERTQ Sbjct: 307 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFNERTQL 366 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGF+ VEE+A V + EI +IEGFD+ETA E+Q RAREYL+ ++ Sbjct: 367 FMEALDVDEMVGQVLASEGFSQVEEVAYVDLGEITAIEGFDDETAEELQTRAREYLDKVE 426 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K +ELGV +EL SI G+ + + VALG + IKT+ED AGC+VDDL GWSE K G Sbjct: 427 AELDAKRKELGVEDELRSIAGMTTAMMVALGGDEIKTVEDFAGCAVDDLTGWSERKDGET 486 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++FDG + + + + ESMI+ AR +GWI ++++ Sbjct: 487 KRFDGLFTGMDITRAEAESMILSARLAVGWITEDEL 522 >gi|222147147|ref|YP_002548104.1| transcription elongation factor NusA [Agrobacterium vitis S4] gi|221734137|gb|ACM35100.1| N-utilization substance protein A [Agrobacterium vitis S4] Length = 538 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/511 (68%), Positives = 424/511 (82%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QI+L++ARDR+ +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVETVEDYGTQIALELARDRNVDAKLGDYIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEII+GTVKRVEYGNVIVDLG +G+IRRDE I RE +R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIINGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRETMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSADPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EIASI+GFD +TA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLEEIASIDGFDGDTAEEIQTRAREYLEKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K + LGVS+EL SI G+ +++ VALG +GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AELDAKRKALGVSDELRSIDGMTTQMLVALGGDGIKTVEDFAGCAADDLIGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 +KF+G S + + + E MI+ AR GWI Sbjct: 483 KKFEGLFSKIDISRTEAEQMIVQARLAAGWI 513 >gi|237816502|ref|ZP_04595495.1| transcription termination factor NusA [Brucella abortus str. 2308 A] gi|237788569|gb|EEP62784.1| transcription termination factor NusA [Brucella abortus str. 2308 A] Length = 575 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/517 (65%), Positives = 423/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 557 >gi|254718200|ref|ZP_05180011.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|265983158|ref|ZP_06095893.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|306837714|ref|ZP_07470583.1| transcription termination factor NusA [Brucella sp. NF 2653] gi|306842729|ref|ZP_07475371.1| transcription termination factor NusA [Brucella sp. BO2] gi|306843580|ref|ZP_07476181.1| transcription termination factor NusA [Brucella sp. BO1] gi|264661750|gb|EEZ32011.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|306276271|gb|EFM57971.1| transcription termination factor NusA [Brucella sp. BO1] gi|306287073|gb|EFM58578.1| transcription termination factor NusA [Brucella sp. BO2] gi|306407272|gb|EFM63482.1| transcription termination factor NusA [Brucella sp. NF 2653] Length = 537 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/517 (65%), Positives = 423/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 519 >gi|225626528|ref|ZP_03784567.1| transcription termination factor NusA [Brucella ceti str. Cudo] gi|225618185|gb|EEH15228.1| transcription termination factor NusA [Brucella ceti str. Cudo] Length = 575 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/517 (65%), Positives = 423/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 557 >gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. 16M] gi|23503011|ref|NP_699138.1| transcription elongation factor NusA [Brucella suis 1330] gi|62291000|ref|YP_222793.1| transcription elongation factor NusA [Brucella abortus bv. 1 str. 9-941] gi|82700909|ref|YP_415483.1| transcription elongation factor NusA [Brucella melitensis biovar Abortus 2308] gi|148559551|ref|YP_001259957.1| transcription elongation factor NusA [Brucella ovis ATCC 25840] gi|161620071|ref|YP_001593958.1| transcription elongation factor NusA [Brucella canis ATCC 23365] gi|189025212|ref|YP_001935980.1| transcription elongation factor NusA [Brucella abortus S19] gi|254690294|ref|ZP_05153548.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|254694782|ref|ZP_05156610.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|254696410|ref|ZP_05158238.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|254705161|ref|ZP_05166989.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|254707321|ref|ZP_05169149.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|254709137|ref|ZP_05170948.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|254731323|ref|ZP_05189901.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|256030662|ref|ZP_05444276.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|256045766|ref|ZP_05448644.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|256060123|ref|ZP_05450305.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|256112485|ref|ZP_05453406.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|256158664|ref|ZP_05456547.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|256254068|ref|ZP_05459604.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|256258547|ref|ZP_05464083.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|256370558|ref|YP_003108069.1| transcription elongation factor NusA [Brucella microti CCM 4915] gi|260169566|ref|ZP_05756377.1| transcription elongation factor NusA [Brucella sp. F5/99] gi|260546263|ref|ZP_05822003.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260563062|ref|ZP_05833548.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260755834|ref|ZP_05868182.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|260759057|ref|ZP_05871405.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|260760782|ref|ZP_05873125.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|260884859|ref|ZP_05896473.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|261215109|ref|ZP_05929390.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|261221209|ref|ZP_05935490.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|261314803|ref|ZP_05954000.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|261316637|ref|ZP_05955834.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|261324100|ref|ZP_05963297.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|261755866|ref|ZP_05999575.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|261759094|ref|ZP_06002803.1| ribosomal protein S1 [Brucella sp. F5/99] gi|265987709|ref|ZP_06100266.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|265992183|ref|ZP_06104740.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|265993921|ref|ZP_06106478.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|265997170|ref|ZP_06109727.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|297247386|ref|ZP_06931104.1| transcription termination protein NusA [Brucella abortus bv. 5 str. B3196] gi|17984018|gb|AAL53148.1| n utilization substance protein a [Brucella melitensis bv. 1 str. 16M] gi|23349051|gb|AAN31053.1| N utilization substance protein A [Brucella suis 1330] gi|62197132|gb|AAX75432.1| MusA, N utilization substance protein A [Brucella abortus bv. 1 str. 9-941] gi|82617010|emb|CAJ12119.1| Ribosomal protein S1:RNA binding S1:KH domain:KH domain, type 1 [Brucella melitensis biovar Abortus 2308] gi|148370808|gb|ABQ60787.1| N utilization substance protein A [Brucella ovis ATCC 25840] gi|161336882|gb|ABX63187.1| transcription termination factor NusA [Brucella canis ATCC 23365] gi|189020784|gb|ACD73506.1| Ribosomal protein S1 [Brucella abortus S19] gi|256000721|gb|ACU49120.1| transcription elongation factor NusA [Brucella microti CCM 4915] gi|260096370|gb|EEW80246.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260153078|gb|EEW88170.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260669375|gb|EEX56315.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|260671214|gb|EEX58035.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|260675942|gb|EEX62763.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|260874387|gb|EEX81456.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|260916716|gb|EEX83577.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|260919793|gb|EEX86446.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|261295860|gb|EEX99356.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|261300080|gb|EEY03577.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|261303829|gb|EEY07326.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|261739078|gb|EEY27074.1| ribosomal protein S1 [Brucella sp. F5/99] gi|261745619|gb|EEY33545.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|262551638|gb|EEZ07628.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|262764902|gb|EEZ10823.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|263003249|gb|EEZ15542.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|264659906|gb|EEZ30167.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|297174555|gb|EFH33902.1| transcription termination protein NusA [Brucella abortus bv. 5 str. B3196] Length = 537 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/517 (65%), Positives = 423/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 519 >gi|163844176|ref|YP_001628581.1| transcription elongation factor NusA [Brucella suis ATCC 23445] gi|163674899|gb|ABY39010.1| transcription termination factor NusA [Brucella suis ATCC 23445] Length = 537 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/517 (65%), Positives = 423/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA VTKVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPVAASFIVNALQPAEVTKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 519 >gi|254713438|ref|ZP_05175249.1| transcription elongation factor NusA [Brucella ceti M644/93/1] gi|254716206|ref|ZP_05178017.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261217980|ref|ZP_05932261.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261321170|ref|ZP_05960367.1| transcription elongation factor NusA [Brucella ceti M644/93/1] gi|260923069|gb|EEX89637.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261293860|gb|EEX97356.1| transcription elongation factor NusA [Brucella ceti M644/93/1] Length = 537 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/517 (65%), Positives = 422/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KT ED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTKEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 519 >gi|260567370|ref|ZP_05837840.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260156888|gb|EEW91968.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] Length = 537 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/517 (65%), Positives = 422/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRG RVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGFRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 519 >gi|328545919|ref|YP_004306028.1| transcription elongation protein (N utilization substance protein A) (L factor) [polymorphum gilvum SL003B-26A1] gi|326415659|gb|ADZ72722.1| Putative transcription elongation protein (N utilization substance protein A) (L factor) [Polymorphum gilvum SL003B-26A1] Length = 544 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/526 (64%), Positives = 425/526 (80%), Gaps = 2/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRGIVIAAMEDAIQKAARSRYGTETEVRAEINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +ISL A+ R+P +G +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVETVENVSTEISLADAKARNPEATLGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YIYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV Sbjct: 183 IRAYIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD+ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNPDAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRQKEFQERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL EGF VEE+A V + EIA IEGFDE+TA EIQ RAR+YL ++ Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVDLEEIAMIEGFDEDTAEEIQARARDYLAELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV +EL SI G+ + + VALG++G+KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDDERRELGVQDELRSIDGLTTAMLVALGKDGVKTIEDLAGCATDDLVGWTERKEGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE--EVQDA 525 + DG LS + E+MI+ AR GWI +E++A++ E+ DA Sbjct: 483 IRHDGALSGFDVSRADAEAMILAARLAAGWITEEELANQNDEIGDA 528 >gi|153008085|ref|YP_001369300.1| transcription elongation factor NusA [Ochrobactrum anthropi ATCC 49188] gi|151559973|gb|ABS13471.1| NusA antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 535 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/517 (66%), Positives = 419/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFTERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGFA VEELA V+ EIASI+GFDE+TA EIQ RAREYL+ I+ Sbjct: 363 FMDALNVDEMVGQVLASEGFASVEELAYVEPGEIASIDGFDEDTAGEIQERAREYLDRIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV +EL +PGI + + VA+GE+G+KTMED AG +VDDL+GW E K G Sbjct: 423 SEQDDRRKELGVEDELRELPGITTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G SS + E M++ AR K GWI +E++A Sbjct: 483 VAHSGIFSSFDVSRVDAEQMVLTARLKAGWITEEELA 519 >gi|225853588|ref|YP_002733821.1| transcription elongation factor NusA [Brucella melitensis ATCC 23457] gi|256262928|ref|ZP_05465460.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|225641953|gb|ACO01867.1| transcription termination factor NusA [Brucella melitensis ATCC 23457] gi|263092802|gb|EEZ16977.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|326410161|gb|ADZ67226.1| transcription elongation factor NusA [Brucella melitensis M28] gi|326539879|gb|ADZ88094.1| transcription termination factor NusA [Brucella melitensis M5-90] Length = 537 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/517 (65%), Positives = 421/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLA QLTGW IDI+TE+E+S R K+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLALQLTGWDIDILTEDEESERRHKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 519 >gi|294851387|ref|ZP_06792060.1| N utilization substance protein A [Brucella sp. NVSL 07-0026] gi|294819976|gb|EFG36975.1| N utilization substance protein A [Brucella sp. NVSL 07-0026] Length = 591 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/517 (65%), Positives = 422/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 57 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 116 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 117 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 176 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 177 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 236 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 237 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 296 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+ ++NAL+PA V KVVL Sbjct: 297 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASVIVNALQPAEVAKVVL 356 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 357 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 416 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFD++TA EIQ RAREYLE I+ Sbjct: 417 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDKDTAGEIQDRAREYLERIE 476 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 477 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 536 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 537 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 573 >gi|319779771|ref|YP_004139247.1| transcription termination factor NusA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165659|gb|ADV09197.1| transcription termination factor NusA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 531 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/522 (64%), Positives = 423/522 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDSGEIASIDGFDEDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K + LGVS+EL IPG+ + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDDKRKALGVSDELREIPGVTTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 + + G L++ G + E M++ AR K GWI ++++A EEV Sbjct: 482 TKVYPGVLANHGVTRADAEQMVLAARLKAGWITEDELAAEEV 523 >gi|114705359|ref|ZP_01438267.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506] gi|114540144|gb|EAU43264.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506] Length = 533 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/517 (65%), Positives = 422/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR++V+ MAD+IQKAARS YG ++IR +IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKTIDREIVIEAMADAIQKAARSRYGQETNIRCDINTKTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+VE+ QI L++ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEDVEDPATQIYLELARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERD QY E+KD+VGEII+G VKRVEYGNVIVDLG + +IRRDE I RE RPGDR Sbjct: 123 VREAERDMQYDEYKDRVGEIINGQVKRVEYGNVIVDLGKGEAIIRRDEQIPRELYRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRRE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITLKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESERRQKEFNERSEI 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGFA VEE+A V E++SIEGFDE+TA E+Q RARE+LE + Sbjct: 363 FMEALNVDEMVGQLLASEGFATVEEVAYVDAEEVSSIEGFDEDTAEELQSRAREFLERRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K ELGV++EL IPG+ +++ VALGE+G KT+ED AG +VDDL GW+E G Sbjct: 423 AEFDAKRVELGVADELKQIPGLTTEMLVALGEDGTKTIEDFAGYAVDDLCGWTERSKGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++F+G LS + E M+++AR K GWI +E +A Sbjct: 483 KRFEGTLSKFDVSRADAEQMVLNARLKAGWITEEDLA 519 >gi|260461982|ref|ZP_05810227.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259032229|gb|EEW33495.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 531 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/512 (64%), Positives = 416/512 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDEDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K + LGVS+EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDDKRKALGVSDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + + G L++ G + E M+++AR K GWI Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWI 513 >gi|239833211|ref|ZP_04681540.1| transcription termination factor NusA [Ochrobactrum intermedium LMG 3301] gi|239825478|gb|EEQ97046.1| transcription termination factor NusA [Ochrobactrum intermedium LMG 3301] Length = 535 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/511 (65%), Positives = 415/511 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL ARDR+P IG ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQIGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA +EELA V+ EIASI+GFD++TA EIQ RAREYL+ I+ Sbjct: 363 FMEALDVDEMVGQVLASEGFASIEELAYVEPGEIASIDGFDDDTAGEIQERAREYLDRIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PGI + + VA+GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 SEQDNRRKELGVADELRELPGITTAMLVAVGEDGVKTIEDFAGYAVDDLVGWRERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G S + E M++ AR K GWI Sbjct: 483 VAHSGIFSPFDVSRVDAEQMVLTARLKAGWI 513 >gi|319408013|emb|CBI81667.1| transcription elongation protein [Bartonella schoenbuchensis R1] Length = 537 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/511 (65%), Positives = 421/511 (82%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A I IG DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVDIVEDYTNEIALSDALKHQVDIKIGDFFCDPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD+Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + +IRRDE I RE+ GDR Sbjct: 123 VRDAERDQQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIIRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV REQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE+E+S NRQK+FNER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDILTEQEESENRQKEFNERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE++ ++ +EGFA +EE+A V + EIASI+GFD ETA EIQ RAREYLE + Sbjct: 363 FMESLDVDEMVGQVMASEGFASIEEIAYVDLEEIASIDGFDNETASEIQSRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGV++EL S+PG+ + + VA+GE+GIKT++D AG +VDDL+GW E KGG + Sbjct: 423 KELDEKRKKLGVADELRSLPGMTNAMLVAIGEDGIKTIDDFAGYAVDDLIGWRERKGGQV 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + F G L+ + E+MI+ AR + GWI Sbjct: 483 QNFSGILTPFDITRTDAEAMILAARVQAGWI 513 >gi|90420533|ref|ZP_01228440.1| transcription termination/elongation factor nusA [Aurantimonas manganoxydans SI85-9A1] gi|90335261|gb|EAS49014.1| transcription termination/elongation factor nusA [Aurantimonas manganoxydans SI85-9A1] Length = 537 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/517 (65%), Positives = 420/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++V+ MAD+IQKAARS YG ++IRV+IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVIGAMADAIQKAARSRYGQETNIRVDINQKTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV+EVE+ QI L +ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDEVEDPNTQIYLDLARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE R GDR Sbjct: 123 VRDAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEQIPRELFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +KAV+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 TSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFLVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERSET 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGFA VEE+A V E+A+IEGFD+ETA EIQ RARE+LE + Sbjct: 363 FMNALNVDEMVGQVLASEGFATVEEIAYVDQDEVAAIEGFDDETASEIQERAREFLERRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K ELGVS++L I G+ + + VALGE+G+KTMED AGC+ DDL+GW+E K G Sbjct: 423 AEFDAKRVELGVSDDLRQINGVTTPMLVALGEDGVKTMEDFAGCAADDLIGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +F G LS+ + + M++ AR GWI + +A Sbjct: 483 TRFPGALSAFDVSRADADQMVLQARLIAGWITEADLA 519 >gi|182678035|ref|YP_001832181.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633918|gb|ACB94692.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 538 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/534 (63%), Positives = 415/534 (77%), Gaps = 9/534 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +VL+ M D+IQKAARS YG +++R EINP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLASMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+E++N QI+L AR ++P+ ++G +++ LPP DFGR+A QSAKQVI+QK Sbjct: 63 FSRLLHVVDEIDNDAVQITLAEARKKNPAAELGDWIAETLPPFDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREVFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VKAV+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDGVIEVKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL Sbjct: 243 ISRDTSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESARRQKEFTERTAM 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ LL +EGF VEELA V+ SE+A IEGFDEETA EIQ RA YL I+ Sbjct: 363 FMGALDVDEVVGQLLASEGFRSVEELAFVEPSELAVIEGFDEETAAEIQARANAYLARIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + RELGVS++L I G+ + + V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 423 AEHETRRRELGVSDDLLEIDGLTNAMLVKFGENDIKTVEDLAGCATDDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI---------EKEKVADEEVQDAS 526 + G L +++ E +I+ AR K GWI E+E A+ E Q S Sbjct: 483 TRHPGILDGFEVSREEAEGLIMKARVKAGWIDALPEASEPEQETFAEAETQSES 536 >gi|323136838|ref|ZP_08071919.1| NusA antitermination factor [Methylocystis sp. ATCC 49242] gi|322398155|gb|EFY00676.1| NusA antitermination factor [Methylocystis sp. ATCC 49242] Length = 532 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/513 (64%), Positives = 414/513 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP TG++ Sbjct: 3 VSANRLEILQIADAVAREKSIDRSIVIASMEDALQKAARSRYGQETEVRAEINPRTGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLLEVV++VEN QI+++ AR R+P+ G +S+ LPP DFGR+A QSAKQ+I+QK Sbjct: 63 FSRLLEVVDKVENDATQIAIEDARKRNPAAQAGDWISETLPPFDFGRIAAQSAKQIIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG +GVIRRDE I RE RPGDR Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEGVIRRDEMIPREMFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VK+V+RDPGSRAK+AV Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFKQEVPEIYDGVIEVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL Sbjct: 243 VSRDSSIDPVGACVGMRGSRVQAVVQELQGERIDIIPWSVDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSSRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNT 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM AI+VDE++ LL +EGF VE+LA V++SE+ASIEGFDE+TA EIQ RAR YL+ ++ Sbjct: 363 FMTAIDVDEVVGRLLASEGFRSVEDLAYVELSELASIEGFDEDTATEIQNRARAYLDKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + ELGVS+EL I G+ + + V LGEN +KTMED AGC DDL+GWSE K G Sbjct: 423 AENEARRVELGVSDELREIDGMTTAMMVRLGENDVKTMEDFAGCVPDDLVGWSEKKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 K +GF + +++ E+MI+ AR ++GWIEK Sbjct: 483 TKHEGFFEGIELSREEAEAMIMAARVRVGWIEK 515 >gi|13474627|ref|NP_106196.1| transcription elongation factor NusA [Mesorhizobium loti MAFF303099] gi|14025381|dbj|BAB51982.1| N utilization substance protein A [Mesorhizobium loti MAFF303099] Length = 531 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/512 (64%), Positives = 416/512 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFD++TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDDDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +K + LGV +EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDEKRKALGVKDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + + G L++ G + E M+++AR K GWI Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWI 513 >gi|254502609|ref|ZP_05114760.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11] gi|222438680|gb|EEE45359.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11] Length = 550 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/517 (64%), Positives = 420/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TGDI Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +ISL A R+P +G +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVETVENVSTEISLDDAAARNPEAGVGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGE+I+G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEFKDRVGEVINGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMSKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDEAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S R K+F ER+Q Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRSKEFQERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ LL EGF VEE+A V+I EI+ IEGFD++TAVEIQ RAR++L ++ Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVEIEEISMIEGFDDDTAVEIQARARDFLNELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ ELGV +EL SI G+ S + VALG++ +KTMEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDEERIELGVLDELRSIDGLTSAMLVALGKDDVKTMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +++DG LS+ + E+M++ AR GWI +E++A Sbjct: 483 KRYDGALSAYDVSRADAENMVMAARLAAGWITEEELA 519 >gi|110636252|ref|YP_676460.1| transcription elongation factor NusA [Mesorhizobium sp. BNC1] gi|110287236|gb|ABG65295.1| NusA antitermination factor [Chelativorans sp. BNC1] Length = 534 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/514 (65%), Positives = 415/514 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSID+ +V+ MAD+IQKAARS YG ++IR +IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKSIDKTIVIQAMADAIQKAARSRYGQETNIRADINAQTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RL+EVVE VE QIS+ AR R+P G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLMEVVENVEEPARQISIVDARTRNPDAQAGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE+ + GDR Sbjct: 123 VREAERDRQYEEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDELIPRESFKYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++A+F++NAL+PA V+KVVL Sbjct: 243 ISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWNENAASFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFTERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGF VEE+A V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMDALNVDEMVGQVLASEGFTSVEEIAYVDADEISSIDGFDEDTAEEIQARAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGVS++L IPG+ + + V LGE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 AERDAKRRELGVSDDLREIPGMTTAMMVKLGEDGVKTIEDFAGYAVDDLVGWRERKDGEN 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + F G S L + + E M++ AR KMGWI ++ Sbjct: 483 KFFPGVFSDLDLSRAEAEQMVVAARLKMGWISED 516 >gi|118590498|ref|ZP_01547900.1| transcription elongation factor NusA [Stappia aggregata IAM 12614] gi|118436961|gb|EAV43600.1| transcription elongation factor NusA [Stappia aggregata IAM 12614] Length = 551 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/511 (64%), Positives = 419/511 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VEN + ISL+ A+ R+P IG +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVDSVENVSTDISLEDAQARNPEASIGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGE+++G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYEEFKDRVGEVVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEEAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFLERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD++TAVEIQ RAR+YL ++ Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDDTAVEIQARARDYLAELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ LGV+++L SI G+ + + VALG++GIKTMEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDEERVSLGVADDLRSIDGLTTAMLVALGKDGIKTMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 ++F+G LS + + E++++ AR GWI Sbjct: 483 KRFEGALSEFDMSRAEAENVVMAARLAAGWI 513 >gi|319898339|ref|YP_004158432.1| transcription elongation protein [Bartonella clarridgeiae 73] gi|319402303|emb|CBI75842.1| transcription elongation protein [Bartonella clarridgeiae 73] Length = 536 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/524 (62%), Positives = 423/524 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKKDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDVGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA+EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVDLEEITSIDGFDHDTALEIQNRAREYLECKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL ++PG+ + + VALGE+GIKTMED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKKLGVSDELQTLPGMTNAMLVALGEDGIKTMEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + F G L++ + E+M++ AR + GWI + + V+DA Sbjct: 483 QTFPGILTAFDITRADAETMVLAARVQAGWINQTDLPQHPVEDA 526 >gi|296448218|ref|ZP_06890114.1| transcription termination factor NusA [Methylosinus trichosporium OB3b] gi|296254258|gb|EFH01389.1| transcription termination factor NusA [Methylosinus trichosporium OB3b] Length = 555 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/524 (62%), Positives = 418/524 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP++G++ Sbjct: 3 VSANRLEILQIADAVAREKSIDRQIVIASMEDALQKAARSRYGQETEVRAEINPKSGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+ V+N QIS++ AR R+P+ +G +S+ LPP DFGR+A QSAKQ+I+QK Sbjct: 63 FSRLLLVVDLVDNDATQISIEDARKRNPAAQVGDWISETLPPFDFGRIAAQSAKQIIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG + +IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEAIIRRDEMIPRETFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ +++VK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDNVIEVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL Sbjct: 243 ISRDSSIDPVGACVGMRGSRVQAVVGELQGERIDIIPWSADAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ++F ERT+ Sbjct: 303 DEDTARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQREFIERTKV 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM AI+VDE++ LL +EGF VE+LA V ++E+A+IEGFDE+TA EIQ RAR YLE ++ Sbjct: 363 FMNAIDVDEVVGRLLASEGFTSVEDLAFVDLAELATIEGFDEDTAAEIQNRARNYLERVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + +ELGV +EL I GI + I V LGEN +K++EDLAGC DDL+GW+E K G Sbjct: 423 AENEARRKELGVLDELKEIDGITTAIMVKLGENDVKSIEDLAGCVPDDLVGWTEKKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 K GFL + +++ E+MI+ AR + GWIE A+E ++A Sbjct: 483 IKQTGFLDGVDISREEAEAMIMAARVRAGWIEAPAPAEESGEEA 526 >gi|307942744|ref|ZP_07658089.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4] gi|307773540|gb|EFO32756.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4] Length = 559 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/517 (64%), Positives = 423/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V+S M D+IQKAARS YGT +++R EINP+TGDI Sbjct: 3 ISANRLELLQIADAVAREKSIDRTIVISAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +I+++ AR R+P +G ++DPLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVEVVENVSTEIAVEDARQRNPEAALGDFIADPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGE+I+G VKR EYGNVIVDLG ++ ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEVINGVVKRAEYGNVIVDLGRAEAIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++++ V+RDPGSRAK+AV Sbjct: 183 IRAYIHDVRREQRGPQIFLSRTHPQFMAKLFTSEVPEIYDGVIEIRTVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDPATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFVERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD+ETA EIQ RAR+YLE ++ Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDETAEEIQARARDYLEELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + +ELGVS++L SI G+ + VALG++ +K+MEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDAERQELGVSDDLRSIDGLTLAMMVALGKDDVKSMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++++G LS+ + + E+M++ AR GWI +E++A Sbjct: 483 KRYEGALSAFDLSRAEAEAMVMAARVAAGWITEEELA 519 >gi|49475029|ref|YP_033070.1| transcription elongation factor NusA [Bartonella henselae str. Houston-1] gi|49237834|emb|CAF27029.1| N utilization substance protein A [Bartonella henselae str. Houston-1] Length = 528 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/519 (62%), Positives = 418/519 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ +E+YT +I+L A R +G +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDIIEDYTSEITLSDALKRQADAKVGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAEREQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RA+EYLE + Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQNRAQEYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGV +EL +PG+ S + VA+GE+G+KTMED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVCDELRMLPGMTSAMLVAIGEDGVKTMEDFAGYAVDDLAGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 + F G L+ + E+M++ AR + GWI + + E Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWINQADLVTE 521 >gi|217978443|ref|YP_002362590.1| NusA antitermination factor [Methylocella silvestris BL2] gi|217503819|gb|ACK51228.1| NusA antitermination factor [Methylocella silvestris BL2] Length = 532 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/512 (63%), Positives = 409/512 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +VLS M D+IQKAARS YG +++R EINP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLSSMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+++EN I+L+ AR ++P+ +G +++ LPP DFGR+A QSAKQVI+QK Sbjct: 63 FSRLLLVVDQIENDAIHITLEDARKKNPAAQVGDWIAETLPPFDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREMFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ I+QVKAV+RDPGSRAK+AV Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFQQEVPEIYDNIIQVKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNA 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ LL +EGF VEELA V+ +E+A+IEGFDE+TAVEIQ RA++YL I+ Sbjct: 363 FMNALDVDEVVGQLLASEGFRSVEELAFVEPAELAAIEGFDEDTAVEIQARAQDYLARIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++ ELGV++EL + G+ + + V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 AEQDQRRIELGVADELREVAGVTTAMLVKFGENDVKTVEDLAGCATDDLIGWTERKEGES 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 K G+L +++ E+MI+ AR GWI+ Sbjct: 483 VKHAGYLDGFELTREEAETMIMTARVHAGWID 514 >gi|163867513|ref|YP_001608712.1| transcription elongation factor NusA [Bartonella tribocorum CIP 105476] gi|161017159|emb|CAK00717.1| transcription elongation protein [Bartonella tribocorum CIP 105476] Length = 543 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/524 (63%), Positives = 422/524 (80%), Gaps = 1/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDVVEDYTTEIALSDALKCQEEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD+QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERDQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTASEIQSRAREYLEHQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDDKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLTGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK-EKVADEEVQD 524 + F G L+ + E+M++ AR + GWI++ + VA+ V+D Sbjct: 483 KSFSGVLTPFDITRADAEAMVLAARVQAGWIDQADLVAENPVED 526 >gi|240849883|ref|YP_002971271.1| transcription elongation factor NusA [Bartonella grahamii as4aup] gi|240267006|gb|ACS50594.1| transcription elongation factor NusA [Bartonella grahamii as4aup] Length = 543 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/513 (63%), Positives = 416/513 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDVVEDYTTEITLSDALKHQAEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAEREQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYL+ + Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTAAEIQSRAREYLDHQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLAGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + F G L+ + E+M++ AR + GWI++ Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWIDQ 515 >gi|49473872|ref|YP_031914.1| transcription elongation factor NusA [Bartonella quintana str. Toulouse] gi|49239375|emb|CAF25708.1| N utilization substance protein A [Bartonella quintana str. Toulouse] Length = 543 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/513 (63%), Positives = 415/513 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++I EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIHAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A R IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDIVEDYTTEITLSDALKRQADAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 V +AERD+QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ GDR Sbjct: 123 VHDAERDQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVSDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DEDV RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDVERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RAREYLE + Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQSRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL +PGI + + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVSDELRMLPGITNAMLVAIGEDGVKTIEDFAGYAVDDLAGWKERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + F G L+ + E+M++ AR + GWI+K Sbjct: 483 QNFSGILTPFDITRFDAEAMVLAARVQAGWIDK 515 >gi|154254057|ref|YP_001414881.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154158007|gb|ABS65224.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 536 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/517 (63%), Positives = 408/517 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR+VV+ MA++IQKAARS YG ++IR INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREVVIEAMAEAIQKAARSRYGAENEIRARINPQTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV+ VEN QI LK A+ R+P+ +G ++ D LPP+DFGR+A Q+AKQVI+QK Sbjct: 63 LVRLLEVVDTVENDAVQIDLKSAQRRNPAAQLGDLIEDELPPVDFGRIAAQTAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY E+KD++GEI++G VKRVEYGNVIVDLG + ++RRDE + RE R GDR Sbjct: 123 VRDAERERQYDEYKDRIGEIVNGIVKRVEYGNVIVDLGRGEAIVRRDELLPRETFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVRREQRGPQ+ LSR+HPQFM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRREQRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++N L PA V KVVL Sbjct: 243 LSNDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSPDAATFIVNGLAPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ +F RT Sbjct: 303 DEDAQRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQAEFLSRTAT 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A++VDE+IA LL +EGFA +EE+A V + EIA IEGFDE+TA EIQ RA EY+E + Sbjct: 363 FAEALDVDEMIAQLLASEGFASIEEVAYVDLDEIAEIEGFDEDTAQEIQSRALEYIERQN 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGV++E+ +PG+ K+ VA GEN +KT+EDLAGC+ DDL+GW+E G Sbjct: 423 AEFDAKRRELGVADEVADVPGVTPKMMVAFGENDVKTVEDLAGCATDDLIGWNETVNGER 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + G + ++ +I+ AR K GWI + +A Sbjct: 483 KHQQGIIEGFDLTAEEANDLIMQARLKAGWITEADLA 519 >gi|209883664|ref|YP_002287521.1| transcription elongation factor NusA [Oligotropha carboxidovorans OM5] gi|209871860|gb|ACI91656.1| transcription elongation factor NusA [Oligotropha carboxidovorans OM5] Length = 541 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/517 (63%), Positives = 409/517 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDSKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISL+ A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVETVENPANQISLEDAKRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+ Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGF+ VEEL V + E+A IEGFDEETA E+Q RAREYLE ++ Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELVLVDVRELAGIEGFDEETANELQSRAREYLEHLE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L+ K +ELGV + + +PGI KI V LGEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 424 AELEAKRKELGVEDAMKDVPGITGKILVKLGENDVKTVEDLAGCATDDLVGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K DGFL + T +D+ E++I+ AR GWI + +A Sbjct: 484 VKHDGFLDASETSRDEAEALIMQARLAAGWITEADLA 520 >gi|254471028|ref|ZP_05084431.1| N-utilization substance protein A [Pseudovibrio sp. JE062] gi|211960170|gb|EEA95367.1| N-utilization substance protein A [Pseudovibrio sp. JE062] Length = 572 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/514 (63%), Positives = 411/514 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ + D+IQKAARS YGT +++R EINP+TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRSIVIAALEDAIQKAARSRYGTETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +I+L A++R+P IG ++DPLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVEVVENISTEIALVDAQERNPDATIGDFMADPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERD+QY EFKD++GE+++ VKRVEYGNV+VD G + ++RRDE I RE R GDR Sbjct: 123 VREAERDQQYDEFKDRIGEVLNAVVKRVEYGNVVVDTGKGEAIVRRDELIPREIFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ I+DVRREQRGPQV LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV Sbjct: 183 IRALIFDVRREQRGPQVFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V KVVL Sbjct: 243 LSNDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDDAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F R+ Sbjct: 303 DEDSERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWGIDIMTEAEESERRQKEFQIRSDL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +NVDE+++ LL +EGF VEE+A V I EI+SIEGFDEETA EIQ RAREYLE + Sbjct: 363 FQNTLNVDEMVSQLLASEGFTSVEEVAYVDIDEISSIEGFDEETADEIQARAREYLEEQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ R+LGVSEEL +PG+ S + VALG++ IKTMEDLAGC+ DDL+GW+E K Sbjct: 423 AKLAEERRQLGVSEELVQVPGLTSAMLVALGKDEIKTMEDLAGCAADDLVGWTERKDKET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + +G LS + E++++ AR GWI E Sbjct: 483 IRVEGTLSGFDLSRADAEAIVMSARVAAGWISPE 516 >gi|299133375|ref|ZP_07026570.1| transcription termination factor NusA [Afipia sp. 1NLS2] gi|298593512|gb|EFI53712.1| transcription termination factor NusA [Afipia sp. 1NLS2] Length = 535 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/517 (63%), Positives = 407/517 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISLK A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVETVENAANQISLKDAQRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+ Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGF+ VEELA V + E+A IEGFDEETA E+Q RAREYLE +D Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELALVDVRELAGIEGFDEETANELQSRAREYLEQLD 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L+ K +ELGV + L IPG+ K+ V GEN +KT+EDLAGC+ DDL+GW E K G Sbjct: 424 AELEAKRKELGVDDALKDIPGVTGKMLVKFGENDVKTVEDLAGCATDDLVGWVERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K GFL + T +D+ E++I+ AR GWI + +A Sbjct: 484 VKHAGFLDASETSRDEAEAIIMQARLAAGWITEADLA 520 >gi|319406547|emb|CBI80189.1| transcription elongation protein [Bartonella sp. 1-1C] Length = 537 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/513 (62%), Positives = 413/513 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++ Sbjct: 303 DEDAERIEVVVPSDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLEHKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K +ELGVS+EL ++P I + + VA+GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKELGVSDELQTLPSITNAMLVAIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + F G L+ + E+M++ AR + GWI + Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQ 515 >gi|319405101|emb|CBI78705.1| transcription elongation protein [Bartonella sp. AR 15-3] Length = 537 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/513 (63%), Positives = 415/513 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F+ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFSERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAR+YLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFISIEEIAYVDLEEIKSIDGFDHDTASEIQNRARKYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL +PGI + + VA+GE+GIKTMED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKKLGVSDELQLLPGITNAMLVAIGEDGIKTMEDFAGYAVDDLVGWREFKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + F G L+ + E+M++ AR + GWI + Sbjct: 483 QNFPGILTPFDVTRADAEAMVLAARVQAGWINQ 515 >gi|319403631|emb|CBI77216.1| transcription elongation protein [Bartonella rochalimae ATCC BAA-1498] Length = 537 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/513 (62%), Positives = 413/513 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++ Sbjct: 303 DEDAERIEVVVPGDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K +ELGVS+EL ++PGI + + V +GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKELGVSDELQTLPGITNAMLVVIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + F G L+ + E+M++ AR + GWI + Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQ 515 >gi|300024995|ref|YP_003757606.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299526816|gb|ADJ25285.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 543 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/517 (63%), Positives = 412/517 (79%), Gaps = 3/517 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EK+ID+ +V+ M D+IQKAA+S YG +DIR EI+P+TG+ Sbjct: 6 ISANRLELLQIADAVAREKTIDKKIVIEAMEDAIQKAAKSRYGAENDIRCEIDPKTGEAK 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R+L VVE VEN QI+++ A+ R+P G ++++ LPP++FGRVA Q+AKQVI+QK Sbjct: 66 LTRVLAVVEAVENDATQITVEDAKKRNPEAKAGDMIAETLPPLEFGRVAAQNAKQVIVQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ E+KD+VG+ +GTVKRVEYGNVIVDLG ++G+IRRDE I REN+R GDR Sbjct: 126 VREAERDRQFAEYKDRVGDTTNGTVKRVEYGNVIVDLGRAEGIIRRDEMIPRENVRLGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++IYDVRREQRGPQ+ L+R P+FM LF EVPEIY+G+V++K+V+RDPGSRAK+AV Sbjct: 186 IRAFIYDVRREQRGPQIFLTRARPEFMSSLFRAEVPEIYDGVVEIKSVARDPGSRAKIAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRG+RVQAVV EL+ EK+DI+ W+PD+A+F++NAL PA VTKVVL Sbjct: 246 ISKDSSIDPVGACVGMRGARVQAVVNELQGEKVDIIQWNPDAASFIVNALAPAEVTKVVL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP+ QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERTQ Sbjct: 306 DEDSNRIEVVVPEAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTQL 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M A++VDE+IA LLV EGFA VEE+A V ISEIA IEGFDE TA +IQ RARE++E + Sbjct: 366 LMDALDVDEVIAQLLVTEGFASVEEVAYVDISEIAHIEGFDEGTAEQIQIRAREFIEQQE 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGV++EL IPGI++ + VALGENGIKT+ED A C+ D+L+GW++ K Sbjct: 426 AERDAKRRELGVADELAEIPGINTAMMVALGENGIKTVEDFADCATDELVGWTDRKKDKD 485 Query: 482 E---KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 K GFL + VE+MI+ AR GWI+ E Sbjct: 486 TEPVKHKGFLDGFELSRTDVENMIMAARVHAGWIKAE 522 >gi|316931577|ref|YP_004106559.1| transcription termination factor NusA [Rhodopseudomonas palustris DX-1] gi|315599291|gb|ADU41826.1| transcription termination factor NusA [Rhodopseudomonas palustris DX-1] Length = 537 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/527 (62%), Positives = 412/527 (78%), Gaps = 4/527 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDEI+ LL +EGF VEELA V E+ASIEGFDEETA E+Q RAREYL+ Sbjct: 363 RAFMDALNVDEIVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRAREYLDQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRTELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI-EKEKVADEEVQD 524 G K+ G L + ++ E +I+ AR K GWI E E +DEE D Sbjct: 483 GEPVKYPGILDGMELSREDAEHLIMQARVKAGWIDESELASDEEPAD 529 >gi|158421642|ref|YP_001522934.1| transcription elongation factor NusA [Azorhizobium caulinodans ORS 571] gi|158328531|dbj|BAF86016.1| transcription termination factor [Azorhizobium caulinodans ORS 571] Length = 532 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/511 (62%), Positives = 404/511 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAARS YG +DI EINP TG++ Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARSRYGQETDIHAEINPRTGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK Sbjct: 64 LARHLLVVDEVENSATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++ E+++G VKRVEYGNV+VDLG + ++RRDE + RE ++ GDR Sbjct: 124 VREAERDRQYDEFKDRISEVVNGLVKRVEYGNVVVDLGRGEAILRRDELLPREVVKTGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YIYDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV Sbjct: 184 IRAYIYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERT+ Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTKM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+++DE++ LL +EGF VEE+A V +SE+ASIEGFDEETA E+Q RA ++L ++ Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVPVSELASIEGFDEETAAELQARALKHLSDVE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV ++L ++PG+ SK+ VA G+N IK++EDLAGC+ DDL+GW+E K G Sbjct: 424 EALDNERRELGVEDDLKTVPGVTSKMLVAFGKNDIKSVEDLAGCATDDLVGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 +F G L ++ ES+I+ AR GWI Sbjct: 484 VRFPGALDGFELSREDAESLIMQARIAAGWI 514 >gi|312115896|ref|YP_004013492.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311221025|gb|ADP72393.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 581 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/511 (63%), Positives = 405/511 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +VLS M D+IQKAA+S YG+ ++IR EI+P TG+I Sbjct: 6 ISANRLELLQIADAVAREKSIDRTLVLSAMEDAIQKAAKSRYGSENEIRAEIDPRTGEIR 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE V +ISLK A R+P ++G +++PLPP+DFGRVA Q+AKQVI+QK Sbjct: 66 LSRLLEVVERVTLDATEISLKDAMKRNPEAEVGDFIAEPLPPLDFGRVAAQNAKQVIVQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER+RQ+ E+KD++ EI+SG VKR EYGNV++DLG ++ +IRRDET+ REN + GDR Sbjct: 126 VREAERERQFEEYKDRMSEIVSGVVKRAEYGNVMIDLGRAEAIIRRDETLPRENYKLGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRRE RGPQ+ LSRT P+FM KLF EVPEIY+GIV++K+V+RDPGSRAK+AV Sbjct: 186 VRAYVYDVRRENRGPQIFLSRTRPEFMAKLFAQEVPEIYDGIVEIKSVARDPGSRAKIAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S ++S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V KVVL Sbjct: 246 VSKETSVDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSGDPATFIVNALAPAEVAKVVL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGR+GQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 306 DEESERIEVVVPDEQLSLAIGRKGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTAA 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VDE+IA LLV+EGFA VEELA V E+A IEGFDE TA+EIQ RARE+LE + Sbjct: 366 FVNALDVDEMIAQLLVSEGFASVEELAFVDSHEVAIIEGFDENTALEIQERAREFLERQE 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K R LGV++EL +PG+ + + VA GEN IKT+EDLA C+ D+L GW+E G Sbjct: 426 AELNEKRRALGVADELAEVPGVTTAMLVAFGENNIKTVEDLADCATDELAGWTERAHGQT 485 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ G L K +E +II AR K GWI Sbjct: 486 KQNPGILQGFDLSKSDIEHLIIAARVKAGWI 516 >gi|146337225|ref|YP_001202273.1| transcription elongation factor NusA [Bradyrhizobium sp. ORS278] gi|146190031|emb|CAL74023.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Bradyrhizobium sp. ORS278] Length = 535 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/526 (62%), Positives = 409/526 (77%), Gaps = 3/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + ++ASIEGFDEETA E+Q RARE+LE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLASIEGFDEETATELQTRAREFLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + L+ K +ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW E K G Sbjct: 423 QEAELEAKRKELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWVERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G KF G L L +D E+M++ AR K GWI + +A E +D Sbjct: 483 GEQTKFAGILDGLDVSRDDAEAMVMQARVKAGWITEADLAKGEAED 528 >gi|27375896|ref|NP_767425.1| transcription elongation factor NusA [Bradyrhizobium japonicum USDA 110] gi|27349034|dbj|BAC46050.1| N-utilization substance protein A [Bradyrhizobium japonicum USDA 110] Length = 536 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/520 (62%), Positives = 408/520 (78%), Gaps = 3/520 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN++ QISL A+ +P +G ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENHSNQISLVDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V I E+A IEGFDEETA E+Q RAREYLE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDIKELAGIEGFDEETAQELQNRAREYLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + L+ K ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K G Sbjct: 423 QEAELEAKRVELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G K+ G L + +D E+MI+ AR K GWI + +A Sbjct: 483 GETTKYPGALDGIEISRDDAEAMIMQARVKAGWITEADLA 522 >gi|121602814|ref|YP_989501.1| transcription elongation factor NusA [Bartonella bacilliformis KC583] gi|120614991|gb|ABM45592.1| transcription elongation protein nusA [Bartonella bacilliformis KC583] Length = 537 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/520 (61%), Positives = 414/520 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +ISL A IG + D LP MDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQIVDIVEDYTTEISLSDALKHQADAKIGDFIFDLLPSMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + V+RRDE I E+ GDR Sbjct: 123 VRDAERNHQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAVVRRDELIPCESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KV+L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VD+I+ ++ +EGF+ +EE+A V + EIASI+GFD E A EIQ RAREYLE + Sbjct: 363 FMESLDVDKIVGQVMASEGFSSIEEIAYVGLDEIASIDGFDSEIATEIQKRAREYLENKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K + L V++EL ++PGI + + +A+GE+G+KTM+D AG +VDDL+GW E K G Sbjct: 423 KELDEKRKSLCVADELQTLPGITNAMLIAIGEDGVKTMDDFAGYAVDDLVGWRERKKGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 + F G L+ + E+MI++AR + GWI + + E+ Sbjct: 483 QNFPGILTPFDITRADAEAMILYARVQAGWITQTDLTTED 522 >gi|92115662|ref|YP_575391.1| transcription elongation factor NusA [Nitrobacter hamburgensis X14] gi|91798556|gb|ABE60931.1| NusA antitermination factor [Nitrobacter hamburgensis X14] Length = 536 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/519 (62%), Positives = 407/519 (78%), Gaps = 2/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV+E+EN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LTRHMLVVDEIENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + V+RRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVVRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEEL V+ E+A IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMEALNVDEVVGQLLASEGFMSVEELTLVETRELAGIEGFDDETANELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELDNRRKELGVDDALKTVPGVTSKMLVKLGENEVRTVEDLAGCATDDLVGWTERKDG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K G+L + ++ E++I+ AR GWI + +A Sbjct: 484 EAVKHAGYLDGIEVSREDAEAIIMQARLIAGWITEADLA 522 >gi|115522227|ref|YP_779138.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisA53] gi|115516174|gb|ABJ04158.1| NusA antitermination factor [Rhodopseudomonas palustris BisA53] Length = 538 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/521 (63%), Positives = 409/521 (78%), Gaps = 4/521 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISL A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LTRHMLVVEQVENSANQISLVDAQRANPGAMIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFENST 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V E+ASIEGFD+ETA E+Q RAREYLE Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELALVDARELASIEGFDDETAGELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ K +ELGV +EL ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 424 LESELEAKRKELGVEDELKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483 Query: 480 NIE--KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 E KF G L + + E++I+ AR K GWI + ++A Sbjct: 484 VAEPVKFPGILDANEISRADAEALIMQARVKAGWITEAELA 524 >gi|39933515|ref|NP_945791.1| transcription elongation factor NusA [Rhodopseudomonas palustris CGA009] gi|39647361|emb|CAE25882.1| putative NusA protein, transcriptional termination factor [Rhodopseudomonas palustris CGA009] Length = 537 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/523 (62%), Positives = 410/523 (78%), Gaps = 3/523 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 K+ G L + ++ E +I+ AR K GWI++ ++A EE Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEE 525 >gi|75674221|ref|YP_316642.1| transcription elongation factor NusA [Nitrobacter winogradskyi Nb-255] gi|74419091|gb|ABA03290.1| NusA antitermination factor [Nitrobacter winogradskyi Nb-255] Length = 538 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/519 (61%), Positives = 406/519 (78%), Gaps = 2/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR++ QSAKQVI+QK Sbjct: 64 LTRHMLVVEQVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRISAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ +NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMETLNVDEVVGQLLASEGFTSVEELTLVDTREIAGIEGFDDETATELQNRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELENRRKELGVDDALKTVPGVTSKMLVKLGENEVRTIEDLAGCATDDLVGWTERKEG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K G+ + ++ E++I+ AR +GWI + +A Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLSVGWINEADLA 522 >gi|192288873|ref|YP_001989478.1| transcription elongation factor NusA [Rhodopseudomonas palustris TIE-1] gi|192282622|gb|ACE99002.1| NusA antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 537 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/523 (62%), Positives = 410/523 (78%), Gaps = 3/523 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 K+ G L + ++ E +I+ AR K GWI++ ++A EE Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEE 525 >gi|91974715|ref|YP_567374.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB5] gi|91681171|gb|ABE37473.1| NusA antitermination factor [Rhodopseudomonas palustris BisB5] Length = 540 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/520 (61%), Positives = 409/520 (78%), Gaps = 3/520 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV++VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVDKVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G++++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDVVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFQQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELAMVDIRELASIEGFDEETATELQARAAEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 ++ L+ + +ELGV + L +PG+ SK+ V LGE +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 VETELEARRQELGVEDALKDVPGVTSKMLVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K+ G L + +D E +I+ AR K GWI +E++A Sbjct: 483 AEPVKYAGILDGVEMTRDDAEHLIMQARVKAGWITEEELA 522 >gi|86747724|ref|YP_484220.1| transcription elongation factor NusA [Rhodopseudomonas palustris HaA2] gi|86570752|gb|ABD05309.1| NusA antitermination factor [Rhodopseudomonas palustris HaA2] Length = 539 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/521 (62%), Positives = 408/521 (78%), Gaps = 4/521 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVENVENPANQISLKAAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR Sbjct: 123 VREAERDRQYSEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELALVDIRELASIEGFDEETATELQARASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 ++ ++ + ELGV + L +PGI SKI V LGE +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 VETEMEARRLELGVEDALKDVPGITSKILVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482 Query: 479 GNIEKFDGFLSSL-GTPKDQVESMIIHARYKMGWIEKEKVA 518 KF G L + G +D+ E +I+ AR K GWI +E++A Sbjct: 483 AEPVKFAGILDGVEGVTRDEAEDLIMQARVKAGWITEEELA 523 >gi|148251679|ref|YP_001236264.1| transcription elongation factor NusA [Bradyrhizobium sp. BTAi1] gi|146403852|gb|ABQ32358.1| NusA antitermination factor [Bradyrhizobium sp. BTAi1] Length = 537 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/526 (61%), Positives = 408/526 (77%), Gaps = 3/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRRGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + ++A IEGFDEETA E+Q RARE+LE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLAGIEGFDEETATELQTRAREFLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + L+ K +ELGV + + ++PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K Sbjct: 423 QEAELEAKRKELGVEDAVKTVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKDS 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K G L L +D E+M++ AR K GWI + +A E +D Sbjct: 483 GEQTKHAGILDGLEVSRDDAEAMVMQARVKAGWISEADIAKPEAED 528 >gi|170740831|ref|YP_001769486.1| NusA antitermination factor [Methylobacterium sp. 4-46] gi|168195105|gb|ACA17052.1| NusA antitermination factor [Methylobacterium sp. 4-46] Length = 544 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/525 (62%), Positives = 407/525 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VVE+VEN +I L+ AR +P+ IG V++D LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVEQVENDAREIDLETARRHNPAAQIGDVIADTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AERDRQY E+KD++GEI++G VKRVEYGN IVDLG +G++RRDE+I RE RPGD Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNTIVDLGRGEGIVRRDESIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FMQA++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RA+EYL I Sbjct: 363 TFMQALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQSRAQEYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN ++T+EDLAGC+ DDL+G++E +G Sbjct: 423 EAENDARRRELGVEDELREIDGITTPMMVALGENEVRTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G+L + + E+MI+ AR + GWIE + A E + A Sbjct: 483 AVRHPGYLDGFDLSRAEAEAMIVAARVRAGWIEAPEEAPAEDEQA 527 >gi|85714177|ref|ZP_01045166.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] gi|85699303|gb|EAQ37171.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] Length = 535 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/519 (61%), Positives = 406/519 (78%), Gaps = 2/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV++VEN QISLK A+ +P +G ++D LPP+++GR++ QSAKQVI+QK Sbjct: 64 LTRHMLVVDQVENAANQISLKDAQRANPGAQVGDTIADTLPPLEYGRISAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMEALNVDEVVGQLLASEGFTSVEELTLVDAREIAGIEGFDDETANELQNRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + + ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELENRRKELGVDDAMKTVPGVTSKMLVKLGENDVRTVEDLAGCATDDLIGWTERKEG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K G+ + ++ E++I+ AR GWI + +A Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLIAGWITEADLA 522 >gi|154244252|ref|YP_001415210.1| transcription elongation factor NusA [Xanthobacter autotrophicus Py2] gi|154158337|gb|ABS65553.1| NusA antitermination factor [Xanthobacter autotrophicus Py2] Length = 531 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/512 (61%), Positives = 405/512 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI +IN +TG++ Sbjct: 4 VSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINAKTGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK Sbjct: 64 LARHLLVVDEVENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G++++G VKRVEYGNV+VDLG +G++RRDE + RE ++ GDR Sbjct: 124 VREAERDRQYDEYKDRIGDVVNGLVKRVEYGNVVVDLGRGEGILRRDELLPRETVKTGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV Sbjct: 184 IRAYVYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLA+QLTGW IDI+TE+E+S RQK+F ERT+ Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+++DE++ LL +EGF VEE+A V++ E+ASIEGFDE+TA E+Q RA ++L ++ Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVQLQELASIEGFDEDTAAELQARALKHLAEVE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + ELGV ++L S+PG+ SK+ VA GEN IK++EDLAGC+ DDL+GW+E K G Sbjct: 424 EALDARRIELGVDDDLKSVPGVTSKMLVAFGENDIKSVEDLAGCATDDLIGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G L ++ E++++ AR GWIE Sbjct: 484 VRHAGALDGFELSREDAEALVMQARVAAGWIE 515 >gi|90422002|ref|YP_530372.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB18] gi|90104016|gb|ABD86053.1| NusA antitermination factor [Rhodopseudomonas palustris BisB18] Length = 541 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/514 (63%), Positives = 405/514 (78%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVEEVEN + QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVEEVENSSNQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303 Query: 302 DEDVGRIEVIVP--KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + E+ASIEGFD+ETA E+Q RAREYLE Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDVRELASIEGFDDETANELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 ++ L+ K +ELGV + L ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 424 LESELEAKRKELGVEDALKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G KF G L + + E++I+ AR GWI Sbjct: 484 GEPVKFPGILDANEISRADAETLIMQARVIAGWI 517 >gi|220924484|ref|YP_002499786.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060] gi|219949091|gb|ACL59483.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060] Length = 536 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/525 (61%), Positives = 408/525 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R + VV++VEN +I L+ AR +P+ +G V++D LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHMLVVDQVENDAREIDLETARRHNPAAQVGDVIADTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AERDRQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE+I RE RPGD Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNVIVDLGRGEGIVRRDESIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFIERTN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RAR+YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQTRARDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + +ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 ESENDARRKELGVSDELREIDGITTPMLVALGENDVKTIEDLAGCATDDLVGYTEGRGAE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G+L + + E+MI+ AR + GWIE A E + A Sbjct: 483 AVRHAGYLDGFDLSRAEAEAMIVAARVRAGWIEAAPEAPAEDEQA 527 >gi|298293854|ref|YP_003695793.1| transcription termination factor NusA [Starkeya novella DSM 506] gi|296930365|gb|ADH91174.1| transcription termination factor NusA [Starkeya novella DSM 506] Length = 536 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/512 (62%), Positives = 399/512 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI EI+P TG++ Sbjct: 3 VVSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGAETDIHAEISPRTGEL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++V+N +I L AR +P+ +G ++D LPP DFGR+A QSAKQVI+Q Sbjct: 63 RLARHLLVVDQVDNPAVEIDLDGARRLNPAAQVGDSIADTLPPFDFGRIAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI +G VKRVEYGNV+VDLG + +RRDE + RE + GD Sbjct: 123 KVREAERDRQYEEYKDRIGEITNGAVKRVEYGNVVVDLGRGEASLRRDELLPREVFKTGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+A Sbjct: 183 RIRAYVYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V KVV Sbjct: 243 VTSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDVATFIVNALAPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT+ Sbjct: 303 LDEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFAERTK 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+++DE++ LL +EGFA VEE+A V ++E+ASIEGFDE+TA E+Q RA +L I Sbjct: 363 MFAEALDLDEMMGQLLASEGFASVEEIAYVPVNELASIEGFDEDTAQELQNRALNHLAQI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + L + +ELGV + L +PG+ S + VA GEN IKT+EDLAGC+ DDL GW+E K G Sbjct: 423 EADLDARRKELGVEDALREVPGVTSAMLVAFGENDIKTVEDLAGCATDDLTGWTERKDGE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L ++ E++I+ AR + GWI Sbjct: 483 TVRIAGALDGFDLSREDAEALIMQARVRAGWI 514 >gi|188582066|ref|YP_001925511.1| NusA antitermination factor [Methylobacterium populi BJ001] gi|179345564|gb|ACB80976.1| NusA antitermination factor [Methylobacterium populi BJ001] Length = 560 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/513 (61%), Positives = 402/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P++G + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDPKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I G+ + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGVTTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR GWIE Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLHAGWIE 515 >gi|170750127|ref|YP_001756387.1| NusA antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656649|gb|ACB25704.1| NusA antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 545 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/513 (62%), Positives = 401/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P+TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIDAMEEAIAKAARSRYGAETDVHAEIDPKTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQFDEYKDRIGEILNGIVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++SY++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRSYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDEATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V I E++ I+G DEET EIQ RA+++L I Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAYVDIQELSGIQGLDEETGTEIQARAQDHLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G + Sbjct: 423 EQAHDARRTELGVSDELREIEGITTPMMVALGENDVKTVEDLAGCATDDLVGYTEGRGPD 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR K GWIE Sbjct: 483 AVRHAGYLDGFDLSRAEAEALIMAARLKAGWIE 515 >gi|240139447|ref|YP_002963922.1| transcription termination/antitermination L factor [Methylobacterium extorquens AM1] gi|240009419|gb|ACS40645.1| transcription termination/antitermination L factor [Methylobacterium extorquens AM1] Length = 545 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/513 (61%), Positives = 402/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR K GWI+ Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWID 515 >gi|163852118|ref|YP_001640161.1| transcription termination factor NusA [Methylobacterium extorquens PA1] gi|163663723|gb|ABY31090.1| transcription termination factor NusA [Methylobacterium extorquens PA1] Length = 545 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/513 (61%), Positives = 402/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR K GWI+ Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWID 515 >gi|218530876|ref|YP_002421692.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4] gi|254561862|ref|YP_003068957.1| transcription termination/antitermination L factor [Methylobacterium extorquens DM4] gi|218523179|gb|ACK83764.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4] gi|254269140|emb|CAX25104.1| transcription termination/antitermination L factor [Methylobacterium extorquens DM4] Length = 545 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/513 (61%), Positives = 402/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR K GWI+ Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWID 515 >gi|304392764|ref|ZP_07374704.1| transcription elongation protein NusA [Ahrensia sp. R2A130] gi|303295394|gb|EFL89754.1| transcription elongation protein NusA [Ahrensia sp. R2A130] Length = 553 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/516 (61%), Positives = 412/516 (79%), Gaps = 2/516 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+ANRLEL+QIADAVA EKSIDR +VL MAD+I+KAA++ YG ++IR +IN +TG+I Sbjct: 3 VAANRLELMQIADAVAREKSIDRKIVLDAMADAIEKAAKARYGLETNIRADINEKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL VVE+VE+ +I L A+ ++ + ++G + + LPPMDFGRVA QSAKQVI+QK Sbjct: 63 LQRLLLVVEKVEDPDTEILLADAKHKNEAAELGVHIGELLPPMDFGRVAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQ+ EF+++ GEII+GTVKRVEYGNVIVDLG ++ +IRRDE I RE R GDR Sbjct: 123 VRDAERDRQFAEFENRTGEIINGTVKRVEYGNVIVDLGRAEAIIRRDELIPREMYRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+G+++++AV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRREQRGPQIFLSRTHPQFMAKLFQMEVPEIYDGVIEIRAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DS IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS ++A F++NAL+PA V KVVL Sbjct: 243 ISNDSGIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEEAAGFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQ +F+ T Sbjct: 303 DEDKARIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESGRRQAEFSANTST 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+NVDE++ LL +EGF+D+EE+A V+ E+A IEGFD++TA E+Q RA+E+LE + Sbjct: 363 FTEALNVDEMVGQLLASEGFSDLEEVAYVEQDELAMIEGFDDDTAAELQARAKEFLEKKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENG--IKTMEDLAGCSVDDLLGWSENKGG 479 L K +ELGV+++L +PGI + + VALGE+ IK++ED AG DDL+G++E K G Sbjct: 423 QGLDAKRKELGVADDLRQVPGITTAMMVALGESDEEIKSLEDFAGSVADDLIGYNERKDG 482 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + G LS+ G + Q + MI+ AR + GW+ +E Sbjct: 483 ELIRHTGPLSTFGLSRVQADEMIMAARIEAGWVTEE 518 >gi|304320433|ref|YP_003854076.1| transcription elongation factor NusA [Parvularcula bermudensis HTCC2503] gi|303299335|gb|ADM08934.1| transcription elongation factor NusA [Parvularcula bermudensis HTCC2503] Length = 525 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 312/510 (61%), Positives = 395/510 (77%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+AN++EL+QIA AVA EK ID +V+ M D++ +AARS YG +++R EI+P TG+ Sbjct: 3 VTANKIELIQIARAVAQEKMIDPSIVIEAMEDALSRAARSRYGAETNVRAEIDPRTGETR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+RL+EVVE VEN ++SLK A+ ++P +IG +SDPLPP+DFGRVA AKQVI QK Sbjct: 63 LWRLMEVVESVENDAVEVSLKAAQKQNPEAEIGDFISDPLPPIDFGRVAALGAKQVINQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD QY E+KD+VGEIISG +KR+EYG+VIVDLG + +IRRD+ I RE LR GDR Sbjct: 123 VRDAERDNQYNEYKDRVGEIISGLIKRIEYGHVIVDLGKGEAIIRRDQQIPREPLRQGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI DVRRE RGPQ+ LSR HPQFM +LF EVPE+Y+G++++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIADVRREPRGPQIFLSRNHPQFMARLFEQEVPEVYDGVIEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+DSSIDPVGACVGMRGSRVQAVV EL EKIDIV WS D+ATFV+NAL PA V KVVL Sbjct: 243 YSNDSSIDPVGACVGMRGSRVQAVVGELGGEKIDIVPWSEDTATFVVNALAPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE++ RIEV+VP EQLSLAIGRRGQNVRLASQLTG+ IDI+TEEE+S RQK++ ER++ Sbjct: 303 DEELERIEVVVPDEQLSLAIGRRGQNVRLASQLTGYEIDIMTEEEESAKRQKEYQERSEI 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VD++IA+LLVAEGFA +EE+A V++ EIA IEGFD+ETA E+Q RA E+LE Sbjct: 363 FMKVLDVDDMIANLLVAEGFARIEEIAYVEVEEIAEIEGFDDETAQELQARALEWLEREQ 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV + L I G+ K VAL E G+ T+ED AGC DDL GW+E G Sbjct: 423 AELDARRRELGVEDALLEIEGMTLKWSVALAEEGVLTVEDFAGCVADDLTGWTERVDGEK 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 + ++G L D E MI AR ++GW Sbjct: 483 KHYEGMLEKFRVKPDLAEQMIAEARRQVGW 512 >gi|114571580|ref|YP_758260.1| transcription elongation factor NusA [Maricaulis maris MCS10] gi|114342042|gb|ABI67322.1| NusA antitermination factor [Maricaulis maris MCS10] Length = 572 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 312/514 (60%), Positives = 390/514 (75%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIA AVA EKSID +V+ + ++IQKAARS YG +DIR +I+P+TG++S Sbjct: 5 VSANRLELLQIARAVAAEKSIDESIVIEAIEEAIQKAARSRYGAENDIRAKIDPKTGELS 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVEEVEN + +++L A+ D + +IG V SD LPP++FGRVA Q+AKQVI QK Sbjct: 65 LTRNMTVVEEVENDSQELTLADAKKIDKTAEIGTVFSDELPPIEFGRVASQTAKQVITQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER RQ+ E+KD+VGEIISG VKRVEYGNVI+DLG ++ +IRR + I RENL+ +R Sbjct: 125 VREAERQRQFEEYKDRVGEIISGIVKRVEYGNVIIDLGRAEAIIRRADGIPRENLQNNER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y GI+++ +V+RDPGSRAK+AV Sbjct: 185 VRAYIYDVREEVRGPQIFLSRAHPDFMAALFAQEVPEVYEGIIEIPSVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D SIDPVGACVGMRGSRVQAVV+EL EKIDI+ WS D ATF++NAL+PA V KVVL Sbjct: 245 ISNDGSIDPVGACVGMRGSRVQAVVSELAGEKIDIIPWSDDPATFIVNALQPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW+IDI+TEEE+S RQK+F ERTQ Sbjct: 305 DEEDQRIEVVVPDEQLSLAIGRRGQNVRLASQLTGWSIDILTEEEESERRQKEFAERTQI 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VDE+IA LL EGF DVE+LA + EI +IEGFDE+TA EIQ RAR+YL+ + Sbjct: 365 FIAALDVDEVIAQLLATEGFTDVEDLAYADLGEIGAIEGFDEDTAEEIQARARDYLDRLS 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K +ELGV + + + G+ + V GEN +KT++DLAG DDL GW E K G Sbjct: 425 AEQDAKRKELGVEDAVLEVEGVVLAMAVKFGENDVKTVDDLAGLVTDDLRGWFETKNGER 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + G L + E MI+ AR GWI +E Sbjct: 485 VREPGILEEFNLAAEDAEMMIMRARVAAGWISEE 518 >gi|83945005|ref|ZP_00957371.1| transcription elongation factor NusA [Oceanicaulis alexandrii HTCC2633] gi|83851787|gb|EAP89642.1| transcription elongation factor NusA [Oceanicaulis alexandrii HTCC2633] Length = 578 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 304/514 (59%), Positives = 385/514 (74%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LE+LQIA AVA EK ID +VL + ++IQKAARS YG DI +INP+TG++ Sbjct: 5 VSANKLEILQIARAVAQEKMIDESIVLEAIEEAIQKAARSRYGAELDIHCKINPKTGEMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L VVEEVEN QI+L A+ RDP +IG + LPP++FGRVA Q+AKQVI QK Sbjct: 65 LTSRTTVVEEVENEAHQITLDEAKKRDPEAEIGSFYEEELPPIEFGRVASQTAKQVITQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER RQ+ E+KD++GEI++G VKRVEYGNVI+DLG ++G+IRR + I RE+L+ DR Sbjct: 125 VREAERKRQFNEYKDRIGEIVNGIVKRVEYGNVIIDLGKAEGIIRRSDGIPRESLQVNDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y G++++ V+RDPGSRAK+AV Sbjct: 185 VRAYIYDVREETRGPQIFLSRAHPDFMAALFAQEVPEVYEGVIEIPRVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL EKIDI+ W+PD ATF++NAL+PA V KVVL Sbjct: 245 ISNDSSIDPVGACVGMRGSRVQAVVNELAGEKIDIIPWNPDPATFIVNALQPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 D++ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F+ERT Sbjct: 305 DDEAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDILTEEEESERRQKEFSERTST 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE+IA LL EGFA+VE++A V++ EIA IEGFD++TA EIQ RARE+LE Sbjct: 365 FMNALDVDEVIAQLLATEGFAEVEDIAFVELDEIAVIEGFDDDTAQEIQTRAREFLEKRA 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV + + + G+D + V GEN + T+EDLAG + DDL GW E + G Sbjct: 425 AEQDARRKELGVEDAVLDVEGVDLPMAVKFGENEVCTIEDLAGLTPDDLRGWYETRDGER 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + G L + E +I+ AR GWI +E Sbjct: 485 VREPGILEGSDMSPEDAEMLIMRARVIAGWISEE 518 >gi|302381338|ref|YP_003817161.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302191966|gb|ADK99537.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 298/521 (57%), Positives = 385/521 (73%), Gaps = 9/521 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+IDR++V+ + ++IQK A+S YG DIR I+P+TG+++ Sbjct: 6 ISANRLELLQIANAVAQEKNIDREIVIEALEEAIQKGAKSRYGAHHDIRARIDPKTGELA 65 Query: 62 LFRLLEVVE-------EVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +VE E+E + + + L A RDP +G + LPP +FGRV Q Sbjct: 66 LTRHVTIVEDDWMPEDELEEFNDSAMVRLTDASKRDPEAVVGKEYVEDLPPFEFGRVQTQ 125 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QVI KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I Sbjct: 126 MARQVITGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 185 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDR+++YIYDVR E +GPQ++LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQIMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL Sbjct: 246 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 306 PAEVSKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F+ERT F +A++VDE+IA LLV EGFA VE+LA V E+A IEGFDE+TA E+Q R Sbjct: 366 REFSERTTLFQEALDVDEVIAQLLVTEGFATVEDLAFVDNYEVAEIEGFDEDTAEELQAR 425 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 AR++LE L K ELGV + + ++PG+ I VALGE G+KT+EDLA + D++ G Sbjct: 426 ARDFLERQAAILDAKRVELGVEDGVMAVPGVTGAIAVALGEGGVKTVEDLADLATDEIRG 485 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 E K G K G L S ++ E +I+ AR GWI+ Sbjct: 486 GYEMKNGERVKVPGVLESFNLAQEDAELLILQARVAAGWID 526 >gi|209966175|ref|YP_002299090.1| transcription elongation factor NusA [Rhodospirillum centenum SW] gi|209959641|gb|ACJ00278.1| transcription elongation factor NusA [Rhodospirillum centenum SW] Length = 511 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/464 (61%), Positives = 373/464 (80%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +ELLQ+ADAVA EK+ID++ VL M ++I+KA RS YG DIR I+ +TG+I L R L Sbjct: 1 MELLQVADAVAREKNIDKEHVLEAMEEAIKKAGRSKYGHEHDIRARIDRKTGEIQLTRYL 60 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VEN QI L A+ ++P+ +G + DPLPP+DFGR+A Q+AKQVI+QKVREAE Sbjct: 61 EVVETVENEALQIDLAKAKRKNPAAKVGDFIVDPLPPIDFGRIAAQTAKQVIVQKVREAE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+RQ+ E+KD++GEI++G VKRVEYGNV VDLG ++GV+RRDE++ RE+ + GDRV++YI Sbjct: 121 RERQFNEYKDRMGEIVNGLVKRVEYGNVTVDLGRAEGVLRRDESLPREHFKTGDRVRAYI 180 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVRREQRGPQ+ LSRTHP FM LF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS Sbjct: 181 YDVRREQRGPQIFLSRTHPMFMAGLFKQEVPEIYDGIIEIKAVARDPGSRAKIAVISKDS 240 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVLDE+ G Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNRDPATFVVNALAPAEVAKVVLDEENG 300 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +IEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S RQ++F R+Q FM+A+ Sbjct: 301 KIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDIMTEKEESDRRQEEFRTRSQLFMEAL 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +VD++IAHLLVAEGF VEE+A V + E+ +I+ FDE+ A E+Q RA+ +LE + L++ Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVDLDELTAIDAFDEDVAAELQNRAQAFLEEQNARLEE 420 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 K R LGV +++ ++ + + V LGENG+KT++DLA + D+L Sbjct: 421 KRRALGVDDDVAAVEALTPAMLVKLGENGVKTLDDLADLAGDEL 464 >gi|16124300|ref|NP_418864.1| transcription elongation factor NusA [Caulobacter crescentus CB15] gi|221232982|ref|YP_002515418.1| transcription elongation factor NusA [Caulobacter crescentus NA1000] gi|13421138|gb|AAK22032.1| N utilization substance protein A [Caulobacter crescentus CB15] gi|220962154|gb|ACL93510.1| N utilization substance protein A [Caulobacter crescentus NA1000] Length = 548 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 300/514 (58%), Positives = 393/514 (76%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ + Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64 Query: 62 LFRLLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV E+E ++ +A+ +IG V + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAER 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIASIEGFDEETA E+Q RARE+LE Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAREFLE 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + LGV +EL +I G+ + VALGE +K++EDLAG DD+ GW ENKG Sbjct: 425 KEAAELDAKRKALGVEDELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDMRGWFENKG 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L S + E++I+ AR MGW+ Sbjct: 485 GERVREPGILESFNLSPEDAEALIMRARIAMGWV 518 >gi|295687485|ref|YP_003591178.1| transcription termination factor NusA [Caulobacter segnis ATCC 21756] gi|295429388|gb|ADG08560.1| transcription termination factor NusA [Caulobacter segnis ATCC 21756] Length = 560 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 298/514 (57%), Positives = 394/514 (76%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ + Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64 Query: 62 LFRLLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV E+E ++ L +A+ +IG V + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPLSIAKRAWRDAEIGKVYEEALPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFTER 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFDEETA E+Q RARE+LE Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIAAIEGFDEETAEELQARAREFLE 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + LGV +E+ +I G+ + VALGE +KT+EDLAG DD+ GW E+K Sbjct: 425 KEAAELDAKRKALGVEDEVLAIEGVTLAMAVALGEGDVKTVEDLAGLVPDDMRGWFESKN 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L + + E++I+ AR MGW+ Sbjct: 485 GERVREPGILETFNLSPEDAEALIMRARVAMGWV 518 >gi|254418431|ref|ZP_05032155.1| NusA N-terminal domain family [Brevundimonas sp. BAL3] gi|196184608|gb|EDX79584.1| NusA N-terminal domain family [Brevundimonas sp. BAL3] Length = 587 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 297/521 (57%), Positives = 386/521 (74%), Gaps = 9/521 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+I+R+VV+ + ++IQK A+S YG DIR +I+ +TG+++ Sbjct: 6 ISANRLELLQIAEAVAREKNIEREVVIEAIEEAIQKGAKSRYGAHHDIRAKIDHKTGELA 65 Query: 62 LFRLLEVVE-------EVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +VE E+E + + + LK A RDP +G + LPP +FGRV Q Sbjct: 66 LTRHVTIVEDDWQPEDELEEFNDSAMVRLKDALKRDPEAVVGKEYVETLPPFEFGRVQTQ 125 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +GV+RRD++I Sbjct: 126 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGVMRRDQSIP 185 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDR+++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL Sbjct: 246 SGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+KVVLDE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 306 PAEVSKVVLDEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F+ERT F +A++VDE+IA LLV EGFA +E+LA V E++ IEGFDEETA E+Q R Sbjct: 366 REFSERTGLFQEALDVDEVIAQLLVTEGFATIEDLAYVDPYEVSEIEGFDEETAEELQAR 425 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 AR++L+ L K ELGV + + +PG+ + VALGE G+KT+EDLA + D++ G Sbjct: 426 ARDFLDRKAAELDAKRVELGVEDGVLQVPGVTLAMAVALGEGGVKTVEDLADLATDEIRG 485 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 E K G K G L S ++ E +I+ AR GWI+ Sbjct: 486 GYEVKNGERVKVPGVLESFNLAQEDAEMLILQARVAAGWID 526 >gi|329891253|ref|ZP_08269596.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC 11568] gi|328846554|gb|EGF96118.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC 11568] Length = 576 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 296/521 (56%), Positives = 382/521 (73%), Gaps = 9/521 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELL IADAVA EK+IDR++V+ + ++IQK A+S YG DIR +I+ +TG++S Sbjct: 4 ISANRLELLSIADAVAREKNIDREIVIEAIEEAIQKGAKSRYGAHHDIRAQIDHKTGELS 63 Query: 62 LFRLLEVV-------EEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +V +E+E + + + L+ A RD ++G + LPP +FGRV Q Sbjct: 64 LTRHVTIVADDWQPEDELEEFNDSAMVRLRDALKRDAEAEVGKEYVEVLPPFEFGRVQTQ 123 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I Sbjct: 124 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 183 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDRV++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 184 REVFNVGDRVRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 243 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL Sbjct: 244 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNEDEPTFIVNALA 303 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 304 PAEVAKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F ERT F +A++VDE IA LLV EGFA VE+LA V+ EI+ IEGFDE+TA E+Q R Sbjct: 364 REFAERTALFQEALDVDETIAQLLVTEGFATVEDLAFVEAYEISEIEGFDEDTAEELQTR 423 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 ARE+LE L K LGV + + +PG+ + I VALGE G+KT+EDLA + D++ G Sbjct: 424 AREHLERQAAELDAKRVALGVEDGVLDVPGVTAAIAVALGEGGVKTVEDLADLATDEIRG 483 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 E +GG K G L S ++ E +I+ AR GWI+ Sbjct: 484 GYEVRGGERVKVPGVLESFNLSQEDAEMLILQARVAAGWID 524 >gi|197106902|ref|YP_002132279.1| N utilization substance protein A [Phenylobacterium zucineum HLK1] gi|196480322|gb|ACG79850.1| N utilization substance protein A [Phenylobacterium zucineum HLK1] Length = 561 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 304/528 (57%), Positives = 389/528 (73%), Gaps = 17/528 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+ID+++V+ + ++IQK AR+ YG DIRV I+P+TG+ + Sbjct: 6 ISANRLELLQIAEAVAREKAIDKEIVIEAIEEAIQKGARARYGAEHDIRVHIDPKTGETT 65 Query: 62 LFRLLEVVEE-----------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104 + R++ VV + +E I L A+ RD ++G V + LPP Sbjct: 66 IKRVVTVVADDATFGGGVDPETGEELPIEEPPGIIRLAEAKRRDKDAEVGKVYEELLPPF 125 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 +FGRV Q A+QV++ KVR+AER+RQY E+KD+VGEI++GTVKRVEYGNV+VDLG +G+ Sbjct: 126 EFGRVQTQMARQVVMGKVRDAERERQYEEYKDRVGEIVNGTVKRVEYGNVVVDLGRGEGI 185 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +RRD++I REN GDR++ YIYDVRRE +GPQ+LLSR H FM KLF EVPE+Y+G++ Sbjct: 186 MRRDQSIPRENFNIGDRIRCYIYDVRRETKGPQILLSRAHGGFMAKLFAQEVPEVYDGVI 245 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +++AV+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A Sbjct: 246 EIRAVARDPGSRAKMAVVSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSQDDA 305 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 TF++NAL PA V+KVV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE Sbjct: 306 TFIVNALAPAEVSKVVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTE 365 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++S RQ++F ERT F +A++VDE+IA LLV EGFA VE++ V SEI++IEGFDE+ Sbjct: 366 SQESERRQREFTERTALFQEALDVDEVIAQLLVTEGFATVEDVGYVDPSEISAIEGFDED 425 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464 TA EIQ RAREYLE K RELGV + L I GI + VALGE GIKT+EDLAG Sbjct: 426 TAEEIQTRAREYLEKEAAEYDAKRRELGVEDGLLDIEGITLPMAVALGEGGIKTVEDLAG 485 Query: 465 CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 DDL GW E K G + G L + G E +I+ AR MGW+ Sbjct: 486 LVPDDLRGWFETKNGERVREPGILETFGLDAQDAELLIMRARIVMGWV 533 >gi|315497224|ref|YP_004086028.1| nusa antitermination factor [Asticcacaulis excentricus CB 48] gi|315415236|gb|ADU11877.1| NusA antitermination factor [Asticcacaulis excentricus CB 48] Length = 546 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 300/513 (58%), Positives = 385/513 (75%), Gaps = 2/513 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELLQIADAVA EK ID+ VVL+ + +++QKAARS YG DIRV ++P TG+++ Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVLASIEEAVQKAARSRYGADHDIRVRVDPRTGEMT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + R + VV EE+EN Q L A D +G + LPP + GRV Q A+QV+ Sbjct: 66 ITRYVTVVPDEELENEYAQRGLTEALREDKDAFVGKTYDEVLPPFELGRVQSQMARQVVT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+RQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G++RRD++I RE + Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G++++K+V+RDPGSRAK+ Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIKSVARDPGSRAKM 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V+KV Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIQWSPDEATFIVNALAPAEVSKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW +DIITE +DS RQK+F ERT Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQVDIITESQDSERRQKEFAERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A++ DE+IA LLV EGF+ VE+LA V EIA+IEGFDE+TA E+Q RAR+YLE Sbjct: 366 ALFQEALDADEVIAQLLVTEGFSTVEDLAYVDQMEIAAIEGFDEDTAAELQARARDYLER 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + K ELGV +E+ ++PGI + VALGE G+KT+EDLA + D++ G E +G Sbjct: 426 FEAEQNAKRVELGVEDEVLNVPGITLAMAVALGEAGVKTVEDLADLATDEVRGGFEQRGA 485 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L S E++I++AR GWI Sbjct: 486 EKVRVPGALESFSLSVADAEALILNARIAAGWI 518 >gi|329847354|ref|ZP_08262382.1| transcription elongation protein nusA [Asticcacaulis biprosthecum C19] gi|328842417|gb|EGF91986.1| transcription elongation protein nusA [Asticcacaulis biprosthecum C19] Length = 564 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 303/513 (59%), Positives = 384/513 (74%), Gaps = 2/513 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELLQIADAVA EK ID+ VV++ + ++IQKAARS YG DIRV I+P+ G+++ Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVIASIEEAIQKAARSRYGADHDIRVHIDPKWGEMT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + R + VV EEVEN Q SL A D +G + LPP + GRV Q A+QV+ Sbjct: 66 ITRHVTVVGDEEVENEYAQKSLSDALREDKEAFVGKEYVETLPPFELGRVQTQMARQVVT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+RQY EFKD+VGEI++GTV+RVEYGNVIVDLG +G++RRD++I RE + Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVRRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPEIY+G++++K+V+RDPGSRAK+ Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKM 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA VTKV Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDEATFIVNALAPAEVTKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ R+EV+VP EQLSLAIGRRGQNVRL SQLTGW +DIITE +DS RQK+F ERT Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLGSQLTGWQVDIITESQDSERRQKEFAERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A++VDE+IA LLV EGF VE+LA V +EIA+IEGFDE+TA E+Q RAR++LE Sbjct: 366 ALFQEALDVDEVIAQLLVTEGFTSVEDLAYVDENEIAAIEGFDEDTAQELQARARDFLER 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 K +ELGV + + + G+ + VALGE G+KT+EDLA + D+L G E KGG Sbjct: 426 ETAEQDAKRKELGVEDGVLEVQGVTLPMAVALGEAGVKTVEDLADLATDELRGGFEQKGG 485 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L S ES+I++AR GWI Sbjct: 486 ERVRVPGALESFTLSVPDAESLILNARVTAGWI 518 >gi|114769758|ref|ZP_01447368.1| transcription elongation factor NusA [alpha proteobacterium HTCC2255] gi|114549463|gb|EAU52345.1| transcription elongation factor NusA [alpha proteobacterium HTCC2255] Length = 542 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 294/519 (56%), Positives = 386/519 (74%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++ Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L S + + MI+ AR ++GW+ +E++ Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVTEEQL 521 >gi|161170254|gb|ABX59224.1| transcription elongation factor [uncultured marine bacterium EB000_55B11] gi|297183783|gb|ADI19906.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 542 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 293/514 (57%), Positives = 382/514 (74%), Gaps = 2/514 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++ Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G K DG L S + + MI+ AR ++GW+ Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWV 516 >gi|167644004|ref|YP_001681667.1| transcription elongation factor NusA [Caulobacter sp. K31] gi|167346434|gb|ABZ69169.1| NusA antitermination factor [Caulobacter sp. K31] Length = 568 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 295/514 (57%), Positives = 386/514 (75%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+ +TG+ + Sbjct: 5 ISANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDTKTGETT 64 Query: 62 LFRLLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV E+E ++ L A+ ++G + + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVPDDFELEGEIGKVQLSSAKRTWRDAEVGKIYEESLPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+ GEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRAGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQK F E Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQKQFTET 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFD+ETA E+Q RARE+L+ Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFATVEDVAYVEPHEIAAIEGFDDETADELQTRAREFLD 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K ELGV + L I G+ + VALGE +K++EDLAG DDL GW E K Sbjct: 425 KEAAALDAKRVELGVEDGLLEIEGVTLPVAVALGEGDVKSVEDLAGLIPDDLRGWFETKD 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L S + E++I+ AR MGW+ Sbjct: 485 GERTREAGILDSFNLSPEDAEALIMRARVVMGWV 518 >gi|126728006|ref|ZP_01743822.1| transcription elongation factor NusA [Sagittula stellata E-37] gi|126710971|gb|EBA10021.1| transcription elongation factor NusA [Sagittula stellata E-37] Length = 538 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 289/520 (55%), Positives = 385/520 (74%), Gaps = 4/520 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVQQAKQYMADPKVGDTFVEEVPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK Sbjct: 183 GDRIRCYVKDVRRETRGPQIFLSRTAPEFMRELFKMEVPEIYDGIIEVKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+ IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNGIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA+EYLE Sbjct: 363 TQLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEMDELLVIDGVDEGTAAELQTRAQEYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + + RELG + L + G+ ++ VAL E+G+KT+ED A C+ +L GW+ Sbjct: 423 EQARQAEARARELGADDSLLAFEGLTPQMVVALAEDGVKTLEDFATCADWELAGGWTTQD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G + K DG L G D+ ++M++ AR +GW++ E++ Sbjct: 483 GQRV-KDDGLLEKFGIDLDEAQNMVMTARVMLGWVDPEEL 521 >gi|294675770|ref|YP_003576385.1| transcription elongation factor NusA [Rhodobacter capsulatus SB 1003] gi|294474590|gb|ADE83978.1| transcription elongation factor NusA [Rhodobacter capsulatus SB 1003] Length = 536 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 286/516 (55%), Positives = 386/516 (74%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEDSLARAAKSRYGSEMDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 S R+ VVE+ VENY Q+++ A+ + +G + D +PP+D GR+A QSAKQVI Sbjct: 63 SFTRVRTVVEDEAVENYQAQLTVAQAKQYKTNPQLGDEIVDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFDEFKDRKGTIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+ DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYVKDVRRETRGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V K Sbjct: 243 IAVISNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNADAATFLVNALQPAEVAK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESSRRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ A+++DE A LLVAEGF ++EE+A V + E+ SIEG D+ TA E+Q RAR+Y+E Sbjct: 363 TKLFVDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLSIEGVDDGTAEELQARARDYIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + +ELGV + L + G+ ++ AL ++ +KT+ED A C+ +L GW+ Sbjct: 423 AQNAKAIAAAKELGVEDSLFNFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L G + + +I+ AR ++GW++ Sbjct: 483 GARV-KDEGILEKFGMSLEDAQKLIMTARIQLGWVD 517 >gi|84500726|ref|ZP_00998975.1| transcription elongation factor NusA [Oceanicola batsensis HTCC2597] gi|84391679|gb|EAQ04011.1| transcription elongation factor NusA [Oceanicola batsensis HTCC2597] Length = 536 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 287/516 (55%), Positives = 380/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ AR +G ++ +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQARQYMADPQVGDTFTEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNIIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DEETA E+Q RAR+ LE Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVEIDELLVIDGVDEETANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 ++ RELG + L G+ ++ AL E+G+KT+ED A C+ +L GW+ + Sbjct: 423 AQAKAAMERARELGAEDSLIEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTTVE 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K DG L ++ + M+++AR +GW++ Sbjct: 483 GERV-KDDGLLEPFDVSLEEAQHMVMNARVMLGWVD 517 >gi|260429111|ref|ZP_05783088.1| NusA antitermination factor [Citreicella sp. SE45] gi|260419734|gb|EEX12987.1| NusA antitermination factor [Citreicella sp. SE45] Length = 543 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 289/515 (56%), Positives = 379/515 (73%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVKIDRRTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++K A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVKQAKQYMADPKVGDQFIEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRAGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTSPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F +R Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEQR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G DE+TA E+Q RARE+LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDEDTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + RELG + L G+ ++ AL E+G+KT+ED A C+ +L G +G Sbjct: 423 EQARKALEHARELGAEDSLIEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L + +++I+ AR +GW++ Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVD 517 >gi|119385319|ref|YP_916375.1| transcription elongation factor NusA [Paracoccus denitrificans PD1222] gi|119375086|gb|ABL70679.1| NusA antitermination factor [Paracoccus denitrificans PD1222] Length = 559 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 297/546 (54%), Positives = 388/546 (71%), Gaps = 27/546 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV I+ +TG+ Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIEAMEDSLARAAKSRYGSEMDIRVHIDRKTGNA 62 Query: 61 SLFRLLEVVEE--VENYTCQISL-KVARDRDPSID--------------------IGGVV 97 + R VVE+ VENY Q + + A +PS D G V Sbjct: 63 TFTRARTVVEDEAVENYQAQFTADQAAPYFEPSKDGRAHWLRDGAQLADFSGRPQPGDVF 122 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + +PP+D GR+A QSAKQVI+Q+VREAERDRQY EFKD+VG II+G VKR EYGN+IVD Sbjct: 123 EEQVPPVDLGRIAAQSAKQVILQRVREAERDRQYEEFKDRVGSIINGVVKREEYGNIIVD 182 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 +G + ++RR+E I RE+ RP DR+++Y+ DVRRE RGPQ+ LSRT PQFM +LF MEVP Sbjct: 183 VGRGEAILRRNEKIGRESYRPNDRIRAYVKDVRREARGPQIFLSRTDPQFMAELFKMEVP 242 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+G++++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ Sbjct: 243 EIYDGVIEIKAVARDPGSRAKIAVISYDNSIDPVGACVGMRGSRVQAVVGELQGEKIDII 302 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ATF++NAL+PA V KVV DED RIEV+VP EQLSLAIGRRGQNVRLASQLTG Sbjct: 303 PWSDDQATFLVNALQPAEVAKVVFDEDATRIEVVVPDEQLSLAIGRRGQNVRLASQLTGL 362 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI+TEEE+S RQ +FN RT+ FM A+++DE A LLVAEGF ++EE+A V + E+ S Sbjct: 363 DIDILTEEEESKRRQAEFNARTKLFMDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLS 422 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 IEG DE TA E+Q RARE+LE + + R LGV + L G+ ++ AL ++G+K Sbjct: 423 IEGVDEGTAEELQTRAREHLEAANKAALENARALGVEDSLIEFEGLTPQMVEALAKDGVK 482 Query: 458 TMEDLAGCSVDDLL-GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 T+ED A C+ +L GW+ G + K DG L ++ ++M++ AR +GW++ + Sbjct: 483 TLEDFATCADWELAGGWTTQNGQRV-KDDGILEPFDVSLEEAQTMVMTARVMLGWVDPTE 541 Query: 517 V--ADE 520 + ADE Sbjct: 542 LESADE 547 >gi|260576186|ref|ZP_05844179.1| NusA antitermination factor [Rhodobacter sp. SW2] gi|259021666|gb|EEW24969.1| NusA antitermination factor [Rhodobacter sp. SW2] Length = 533 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/516 (55%), Positives = 383/516 (74%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGAELDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +EN+ Q++LK A P +G V D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDEALENHHAQLTLKQAVAIKPDAVVGDEVIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRKGSIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+I V+VP EQLSLAIGRRGQNVRLASQLT IDI+TE +DS RQ +F ER Sbjct: 303 VVIDEEAGKIVVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIVTETDDSARRQAEFTER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE++A LLV+EGF ++EE+A V + E+ SI+GFDE TA E+Q RAR+ LE Sbjct: 363 TKLFMDTLDIDEMMAQLLVSEGFTNLEEVAYVDLDELLSIDGFDEATAGELQARARDNLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 +I + R LGV + L + G+ ++ AL ++GIKT+ED A C+ +L GW+ Sbjct: 423 AANIKAMENARALGVEDSLVNFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K G L ++ + +++ AR +GW++ Sbjct: 483 GARV-KDQGVLEEFDVSLEEAQHLVMTARVMLGWVD 517 >gi|77464744|ref|YP_354248.1| transcription elongation factor NusA [Rhodobacter sphaeroides 2.4.1] gi|126463584|ref|YP_001044698.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC 17029] gi|221640658|ref|YP_002526920.1| transcription elongation factor NusA [Rhodobacter sphaeroides KD131] gi|332559637|ref|ZP_08413959.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N] gi|77389162|gb|ABA80347.1| N-utilization substance protein A [Rhodobacter sphaeroides 2.4.1] gi|126105248|gb|ABN77926.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221161439|gb|ACM02419.1| NusA antitermination factor [Rhodobacter sphaeroides KD131] gi|332277349|gb|EGJ22664.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N] Length = 535 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 285/516 (55%), Positives = 386/516 (74%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +EN+ Q+++K AR IG + D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDELIENHHAQVTVKQARSYLADPKIGDEIIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRKGTIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE Sbjct: 363 TNLFMETLDIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + + R LG+ + L G+ ++ AL ++GIKT+ED A C+ +L GW+ Sbjct: 423 EANRKALESARALGLEDSLAGFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ + +++ AR +GW++ Sbjct: 483 GQRV-KDEGVLEKFDVSLEEAQHLVMTARVMLGWVD 517 >gi|146278788|ref|YP_001168947.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC 17025] gi|145557029|gb|ABP71642.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17025] Length = 534 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/516 (55%), Positives = 385/516 (74%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ VEN+ QI++K A+ IG + D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDEAVENHHAQITVKQAKSYKSDPQIGDEIIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRKGSIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE Sbjct: 363 TNLFMETPGIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + + R LG+ + L + G+ ++ AL ++GIKT+ED A C+ +L GW+ Sbjct: 423 EANRKALESARALGLEDSLANFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ + +++ AR +GW++ Sbjct: 483 GQRV-KDEGVLEKFDVSLEEAQHLVMTARVMLGWVD 517 >gi|254466388|ref|ZP_05079799.1| transcription termination factor NusA [Rhodobacterales bacterium Y4I] gi|206687296|gb|EDZ47778.1| transcription termination factor NusA [Rhodobacterales bacterium Y4I] Length = 538 Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/516 (55%), Positives = 380/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY +++++ AR + ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMANPEVGQTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 RELG E L G+ ++ AL ++ +K++ED A C+ +L GW+ N Sbjct: 423 AQAKAALDAARELGAEESLIQFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTSN- 481 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 GG K DG L G ++ + M++ AR +GW++ Sbjct: 482 GGERVKDDGILEPFGVSLEEAQDMVMTARIMLGWVD 517 >gi|114799070|ref|YP_758846.1| transcription termination factor NusA [Hyphomonas neptunium ATCC 15444] gi|114739244|gb|ABI77369.1| transcription termination factor NusA [Hyphomonas neptunium ATCC 15444] Length = 592 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 288/519 (55%), Positives = 374/519 (72%), Gaps = 3/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIA AVA EKSID+ +V+ M ++I+KAA++ YG DIR +I+P TG+ + Sbjct: 6 VSANRLEILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L+R+ VV E E+ Q+ L A+ D ++ G + + LPP DFGRVA Q+AKQVI Sbjct: 66 LWRIQTVVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVIT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVR+AER+RQY E+KD+VGEI+SG VKRVEYG+VIVDLG ++G+IRR++ I REN +P Sbjct: 126 QKVRDAERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGRAEGIIRRNDGIPRENFQPN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+Y V RE +GPQ+ LSR P FM KLF EVPE+Y G++Q+KA +RDPGSRAK+ Sbjct: 186 DRVRAYLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKI 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 V S+DSSIDPVGACVGMRG+RVQAVV EL EKIDI+ WS D+ATF++N L+PA V+KV Sbjct: 246 GVISNDSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDED R+EV+V +Q LAIGRRGQNVRLASQLTGW ID+ITE DS QK+F ERT Sbjct: 306 VLDEDERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 FM+A++ DE +A LL +EGF VEE+A V + +IEGFD++ A E+Q RAREYL+ Sbjct: 366 DLFMKALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDR 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE-NKG 478 + K RELGV++E+ + G+ V LGE G+KT+ED+AG DD+ G+ E Sbjct: 426 VATENDAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDITGYREPGPD 485 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +G L KD ++ AR GWIE E + Sbjct: 486 GKPVWVEGILKKGEMRKDDANLFVMKARVAAGWIEPEAI 524 >gi|126724629|ref|ZP_01740472.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2150] gi|126705793|gb|EBA04883.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2150] Length = 534 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 283/514 (55%), Positives = 382/514 (74%), Gaps = 2/514 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + R+ VVEEVENY + +++ A+ ++G V+D +PP++ GR+A QSAKQVI+Q Sbjct: 63 TFTRVRTVVEEVENYQAEFTVEEAKPYKADAEVGDEVTDEVPPVEMGRIAAQSAKQVILQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+REAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP D Sbjct: 123 KIREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGVLRRNEKIGRESYRPND 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+ +KAV+RDPGSRAK+A Sbjct: 183 RIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIDIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVV Sbjct: 243 VISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +FNERT Sbjct: 303 LDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESKRRQAEFNERTG 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A+++DE A LLVAEGF +EE+A V++ E+ I+G DE TA E+Q RAR+Y+E + Sbjct: 363 LFMEALDLDEFFAQLLVAEGFRTLEEVAYVEVDELLVIDGVDEGTAGELQARARDYIEAL 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENKGG 479 + ++ ELGV + L G+ ++ AL E+G+ ++ED A C+ +L GW+ G Sbjct: 423 NKKALERAVELGVVQSLIDFEGLTPQMIEALAEDGVLSLEDFATCADWELAGGWTTVDGE 482 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + K DG L ++ ++M++ AR ++GW++ Sbjct: 483 RV-KDDGVLEKFDVALEEAQNMVMTARIQLGWVD 515 >gi|114762088|ref|ZP_01441556.1| transcription elongation factor NusA [Pelagibaca bermudensis HTCC2601] gi|114545112|gb|EAU48115.1| transcription elongation factor NusA [Roseovarius sp. HTCC2601] Length = 542 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/516 (56%), Positives = 379/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVIEAMEESLARAAKSRYGSEMDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++K A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVKQAKQYMADPQVGDQYVEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE RP Sbjct: 123 LQKVREAERDRQYDEFKDRNGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IGVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G D++TA E+Q RARE+LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDDDTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 RELG + L G+ ++ AL E+G+KT+ED A C+ +L GW+ Sbjct: 423 EQARKALAHARELGAEDSLIEFDGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K DG L + +++I+ AR +GW++ Sbjct: 483 GERV-KDDGLLEKFDVDLAEAQNLIMTARVLLGWVD 517 >gi|126738452|ref|ZP_01754157.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6] gi|126720251|gb|EBA16957.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6] Length = 539 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/519 (54%), Positives = 382/519 (73%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVTIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY +++++ AR + ++G V S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMENPEVGDVFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVEIEELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ ++ AL ++ +KT+ED A C+ +L G N G Sbjct: 423 AQAKAAIDAARALGAEDSLIQFDGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTNDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L G ++ + +++ AR +GW++ E++ Sbjct: 483 GERIKDDGILEPFGMSLEEAQDLVMTARIMLGWVDPEEL 521 >gi|254460407|ref|ZP_05073823.1| transcription termination factor NusA [Rhodobacterales bacterium HTCC2083] gi|206676996|gb|EDZ41483.1| transcription termination factor NusA [Rhodobacteraceae bacterium HTCC2083] Length = 537 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/516 (55%), Positives = 380/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVAIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY + +++ A+ + ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEFTVEQAKQYMENPEVGATFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+ I+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDNIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+A++VDE A LLVAEGF ++EE+A V+I E+ I+G DE+TA E+Q RARE+LE Sbjct: 363 TKLFMEALDVDEFFAQLLVAEGFTNLEEVAYVEIDELLVIDGVDEDTAGELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 K RELG + L + GI ++ L E+G+KT+ED A C+ +L GW+ Sbjct: 423 AKAAAALAKARELGADDSLLTFEGITPQMAEVLAEDGVKTLEDFATCADWELAGGWTTVD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K DG L G ++ +SMI+ AR +GW++ Sbjct: 483 GERV-KDDGLLEQFGMELEEAQSMIMTARVLLGWVD 517 >gi|23016102|ref|ZP_00055862.1| COG0195: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 502 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/466 (62%), Positives = 360/466 (77%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I L R Sbjct: 9 RPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEIQLARY 68 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+QKVR+A Sbjct: 69 IEVVEEVENEATQQTLKQVLKKKPDAQVGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDA 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GDRV++Y Sbjct: 129 ERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGDRVRAY 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S D Sbjct: 189 IYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVQSHD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVVLDE+ Sbjct: 249 SSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVVLDEEA 308 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+ F+QA Sbjct: 309 GRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSNMFIQA 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L D Sbjct: 369 LDVDDVIAHLLVTEGFSSVEEVAYVPSEDIADIEGFDENVAEELQTRARNFLAEQDERYD 428 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+LL Sbjct: 429 QMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELL 474 >gi|149202949|ref|ZP_01879920.1| transcription elongation factor NusA [Roseovarius sp. TM1035] gi|149143495|gb|EDM31531.1| transcription elongation factor NusA [Roseovarius sp. TM1035] Length = 540 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/516 (55%), Positives = 382/516 (74%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVNIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VVE+ VENY ++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 KFTRVRTVVEDEAVENYQAEMTVAQAKQYLDDPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD++G II+G VKR EYGNVIVD+G + ++RR+E I RE RP Sbjct: 123 LQKVREAERDRQFEEFKDRLGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ A+++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFVDALDLDEFFAQLLVSEGFTNLEEVAYVDVDELLVIDGVDEDTAAELQARARDMIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L GW+ K Sbjct: 423 AQAKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ ++M++ AR +GW++ Sbjct: 483 GERV-KDEGILEKFDVSLEEAQNMVMTARVMLGWVD 517 >gi|85705698|ref|ZP_01036795.1| transcription elongation factor NusA [Roseovarius sp. 217] gi|85669688|gb|EAQ24552.1| transcription elongation factor NusA [Roseovarius sp. 217] Length = 539 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/516 (55%), Positives = 381/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRVEI+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVEIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VV + +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 KFTRVRTVVADDALENYQAEMTVEQAKQFLDDPKVGDAFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+VG II+G VKR EYGNVIVD+G + ++RR+E I RE RP Sbjct: 123 LQKVREAERDRQFEEFKDRVGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVDLDELLVIDGVDEDTAAELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L GW+ K Sbjct: 423 AQTKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ + M++ AR +GW++ Sbjct: 483 GERV-KDEGILEKFDVSLEEAQHMVMTARVMLGWVD 517 >gi|83313172|ref|YP_423436.1| transcription elongation factor NusA [Magnetospirillum magneticum AMB-1] gi|82948013|dbj|BAE52877.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 503 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 296/511 (57%), Positives = 374/511 (73%), Gaps = 16/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I L R Sbjct: 9 RPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEIQLARY 68 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+QKVR+A Sbjct: 69 IEVVEEVENEATQQTLKQVLKKKPDAVVGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDA 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GDRV++Y Sbjct: 129 ERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGDRVRAY 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S D Sbjct: 189 IYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVVLDE+ Sbjct: 249 SSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVVLDEEA 308 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+ F+QA Sbjct: 309 GRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSNMFIQA 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L D Sbjct: 369 LDVDDVIAHLLVTEGFSSVEEVAYVPAEDIADIEGFDENVAEELQTRARNFLAEQDERYD 428 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+L+ Sbjct: 429 QMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELI-------------- 474 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 L +D+ ++I+ AR W E+ K Sbjct: 475 DILGKDAMTEDEANAVIMAARAH--WFEEGK 503 >gi|254295403|ref|YP_003061426.1| NusA antitermination factor [Hirschia baltica ATCC 49814] gi|254043934|gb|ACT60729.1| NusA antitermination factor [Hirschia baltica ATCC 49814] Length = 572 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/511 (55%), Positives = 382/511 (74%), Gaps = 1/511 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LE+L IA+ +A EK ID+ +VL MA++IQKAARS YG DI V I+P++G+ + Sbjct: 6 VSANKLEILAIANILAAEKQIDKMIVLEAMAEAIQKAARSRYGQEHDIHVHIDPKSGETT 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + R+ VVEEVE+ +SL+ AR+ DP+ +IG + LPP +FGRVA Q+AKQVI K Sbjct: 66 ITRVQTVVEEVEDPAHHLSLEEAREIDPNAEIGTEFKEILPPFEFGRVAAQTAKQVITGK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKDK G+II+G VKRVE+GN+IVDLG +G+IRR++ + RENL PGDR Sbjct: 126 VRDAERDRQYEEFKDKEGQIINGIVKRVEHGNIIVDLGRGEGIIRRNDGLPRENLNPGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ +Y V RE +GPQ+ LSR HP FMV LF EVPE+Y G++++KA SRDPGSRAK+ V Sbjct: 186 VRAILYKVSREPKGPQLFLSRAHPTFMVALFSQEVPEVYEGVIEIKACSRDPGSRAKIGV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+S+DPVGACVGMRG+RVQAVV+EL+ EKIDI+ WS D ATF++NAL+PA V+KVV+ Sbjct: 246 LSHDASVDPVGACVGMRGARVQAVVSELQGEKIDIIPWSEDEATFIVNALQPAEVSKVVV 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED R+EV+V + Q LAIGRRGQNVRLASQLTGW ID+ TE +DS RQK+F ER+ Sbjct: 306 DEDEERVEVVVEESQFPLAIGRRGQNVRLASQLTGWQIDLTTEAQDSERRQKEFQERSGL 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++ DE++A LL +EGF ++EE+A V + + ASI+GFDE A E+Q RAREYLE + Sbjct: 366 FMRALDADEMLAQLLASEGFENIEEIAYVDLEDFASIDGFDEAVASELQTRAREYLELLA 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + KK ++LGV++E+ + G+ + V G++GIKT++DLAG DDL+GW E Sbjct: 426 AAMDKKRKDLGVTDEVAFMDGVTPVMAVRFGDDGIKTIDDLAGLVPDDLIGWKEPDAKGK 485 Query: 482 EKFD-GFLSSLGTPKDQVESMIIHARYKMGW 511 ++ G L+ +D E I+ AR GW Sbjct: 486 SRWQPGLLAKGEMTRDAAELFILRARVLAGW 516 >gi|159046101|ref|YP_001534895.1| transcription elongation factor NusA [Dinoroseobacter shibae DFL 12] gi|157913861|gb|ABV95294.1| transcription elongation protein nusA [Dinoroseobacter shibae DFL 12] Length = 544 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 290/530 (54%), Positives = 390/530 (73%), Gaps = 10/530 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSID---IGGVVSDPLPPMDFGRVAVQSAK 115 + R+ VVE E+ENY +++++ A+ P +D +G + D +PP++ GR+A QSAK Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAK---PYLDDPKVGDTIVDQVPPVEMGRIAAQSAK 119 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175 QVI+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ Sbjct: 120 QVILQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRGEGVLRRNEKIGRES 179 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 RP DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGS Sbjct: 180 YRPNDRIRCYIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGS 239 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA Sbjct: 240 RAKIAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAE 299 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+KVVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQ +F Sbjct: 300 VSKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEF 359 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ERT F++A++VDE++A LLV+EGF ++EE+A V+ E+ I+GFDE+TA E+Q RARE Sbjct: 360 AERTNMFVEALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRARE 419 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWS 474 +LE ++ RE+GV + L G+ ++ AL +G+KT+ED A C+ +L GW+ Sbjct: 420 FLEEQAKKALERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFATCADWELAGGWT 479 Query: 475 ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G + K +G L ++ + +++ AR ++GW+ E + EE D Sbjct: 480 TVDGERV-KDEGVLEKFDVSLEEAQLLVMTARVQLGWVNPEDLEIEEDAD 528 >gi|149912925|ref|ZP_01901459.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b] gi|149813331|gb|EDM73157.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b] Length = 540 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 284/516 (55%), Positives = 381/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY ++++ A+ IG + +PP+D GR+A QSAKQVI Sbjct: 63 NFTRVRTVVADDELENYQAEMTVDQAKQYLDDPKIGDEFIEEIPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRV++YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRVRAYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D++TA E+Q RAR+ L+ Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDQDTANELQARARDVLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 +K RELG + L G+ ++ VAL E+G+KT+ED A C+ +L GW+ Sbjct: 423 AQAREAMEKARELGAEDSLIEFEGLTPQMIVALAEDGVKTLEDFATCADWELAGGWTTVD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ ++M++ AR +GW++ Sbjct: 483 GQRV-KDEGVLEPFEVSLEEAQNMVMTARVMLGWVD 517 >gi|254475265|ref|ZP_05088651.1| NusA antitermination factor [Ruegeria sp. R11] gi|214029508|gb|EEB70343.1| NusA antitermination factor [Ruegeria sp. R11] Length = 541 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 287/530 (54%), Positives = 387/530 (73%), Gaps = 8/530 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 + R+ VVE+ +ENY +++++ A+ DPS+ G V + +PP++ GR+A QSAKQ Sbjct: 63 TFTRVRTVVEDDALENYQAEMTVEQAKQYMADPSV--GDVFVEEVPPVEMGRIAAQSAKQ 120 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 VI+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ Sbjct: 121 VILQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESY 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 RP DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSR Sbjct: 181 RPNDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V Sbjct: 241 AKIAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEV 300 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +KVVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F Sbjct: 301 SKVVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFE 360 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 RTQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +Y Sbjct: 361 ARTQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADY 420 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSE 475 LE R LGV + L G+ ++ AL ++GIKT+ED A C+ +L GW+ Sbjct: 421 LEAQAKAAIDAARALGVEDSLIDFDGLTPQMIEALAKDGIKTLEDFATCADWELAGGWTS 480 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 NKG + K DG L + +++++ AR +GW++ ++ E DA Sbjct: 481 NKGERV-KDDGILEPFDVSLEDAQNLVMTARVLLGWVDPAELEAEAEDDA 529 >gi|148259243|ref|YP_001233370.1| transcription elongation factor NusA [Acidiphilium cryptum JF-5] gi|326402396|ref|YP_004282477.1| transcription elongation protein NusA [Acidiphilium multivorum AIU301] gi|146400924|gb|ABQ29451.1| NusA antitermination factor [Acidiphilium cryptum JF-5] gi|325049257|dbj|BAJ79595.1| transcription elongation protein NusA [Acidiphilium multivorum AIU301] Length = 506 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 286/466 (61%), Positives = 359/466 (77%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELL +ADAVA EK IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ L R Sbjct: 9 RPELLLVADAVAREKQIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVRLSRW 68 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+VRE Sbjct: 69 TEAVETVENEETQIPIHIARKFKPDIEVGGHLVDPLPPIDFGRIAAQTAKQVIVQRVREY 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER RQY E+KD+VGEII+G VKR EYGN++VDLG S+ ++RRDETI RENL GDRV+++ Sbjct: 129 ERKRQYDEYKDRVGEIITGVVKRTEYGNLMVDLGRSEALLRRDETIPRENLHNGDRVRAF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY GI+++KAV+RDPGSRAK+AV S D Sbjct: 189 IYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYEGIIEIKAVARDPGSRAKMAVISRD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP+ ATFV+NAL PA V+KVVLDE+ Sbjct: 249 SSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPNPATFVVNALAPAEVSKVVLDEEA 308 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G++EV+VP QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ F++A Sbjct: 309 GKVEVVVPDTQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGLFVEA 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD++IA LLV EGF VE+LA + E+A+IEGFDE A E+Q RA LE L+ Sbjct: 369 LDVDDVIAGLLVTEGFEGVEDLAATPVEELAAIEGFDEGIAAELQRRAEVALERKATELE 428 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 K R LGV+++L + G+ + VALGE G+KT++DLA + D+L+ Sbjct: 429 DKRRALGVADDLAGLEGLSPAMLVALGEKGVKTLDDLADLASDELI 474 >gi|58040013|ref|YP_191977.1| transcription elongation factor NusA [Gluconobacter oxydans 621H] gi|58002427|gb|AAW61321.1| N utilization substance protein A NusA [Gluconobacter oxydans 621H] Length = 517 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 274/470 (58%), Positives = 357/470 (75%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S R ELL +ADAV+ EK+IDR+ VL M +IQKA R+ YG DIR I+ +TG++ Sbjct: 3 TSVTRPELLLVADAVSREKNIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEHVENEDTQIPLHIARKFQPEIQAGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLMVEIGHTEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDAAIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRSSQ 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+ IEGFDE A E+ RA +YL + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHTIEELAYTDPGELNDIEGFDESVAEELMHRANDYLASKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 L + + LGV++++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 423 QALDDQRKALGVTDDVAELGTFTNQMLVTLGEKGVKTLDDLADLAGDELV 472 >gi|87200505|ref|YP_497762.1| transcription elongation factor NusA [Novosphingobium aromaticivorans DSM 12444] gi|87136186|gb|ABD26928.1| NusA antitermination factor [Novosphingobium aromaticivorans DSM 12444] Length = 544 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 291/534 (54%), Positives = 389/534 (72%), Gaps = 17/534 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD+ Sbjct: 5 ISANRAELLAIANAVATEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEVVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERDRQYDEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R+ RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILKVERQNRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++ Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGF ++EE+A ++++E+A+IEGFDEE A E+Q RA E +E + Sbjct: 365 FEEELDVDETLSQLLVAEGFTELEEVAYIEMAELAAIEGFDEELAEELQSRASEAIERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------E 475 L+++ R LGV + L +P + + VALG+ GIKT++DLA + D+L+ Sbjct: 425 EALREQRRALGVDDALAELPHLTEAMLVALGKAGIKTLDDLADLATDELIAKKRAEQRRR 484 Query: 476 NKGGNIEKFD---------GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 N G E+ + G L G ++Q +I+ AR W E E VA+E Sbjct: 485 NDKGPRERTERSERTEDKGGVLGEFGLSEEQGNEIIMAARAH--WFEDEPVAEE 536 >gi|310817128|ref|YP_003965092.1| transcription elongation factor NusA [Ketogulonicigenium vulgare Y25] gi|308755863|gb|ADO43792.1| transcription elongation factor NusA [Ketogulonicigenium vulgare Y25] Length = 533 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 280/516 (54%), Positives = 379/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKLIDPSLVVEAMEESLARAAKSRYGADMDIRVHIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VVE+ VENY ++++ A+ + ++G + + +PP+D GR+A QSAKQVI Sbjct: 63 HFSRVRTVVEDDAVENYHAEMTVDQAKLYMSNPEVGDIFEEEIPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QK+REAERDRQY EFK + G II+GTVKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKIREAERDRQYEEFKHRQGTIINGTVKREEYGNLIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCYVKDVRREVRGPQIFLSRTAPEFMRELFKMEVPEIYEGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVLSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDMPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE E+S RQ +F R Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTNLDIDIMTESEESKRRQAEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLVAEGF ++EE+A V + E+ +IEG DE TA E+Q RAR+++E Sbjct: 363 TKLFMETLDLDEFFAQLLVAEGFTNLEEVAYVDLDELTTIEGVDEATAGEVQARARDHIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + + R LG + L S PG+ ++ AL ++G+KT+ED A C+ +L GW+ + Sbjct: 423 SQNEKALEAARALGAEDSLISFPGLTPQMVEALAKDGVKTLEDFATCADWELAGGWTTVE 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K DG L ++ ++MI+ AR +GW++ Sbjct: 483 GKRV-KDDGVLEPFDLSLEEAQTMIMTARVSLGWVD 517 >gi|288959698|ref|YP_003450039.1| N utilization substance protein A [Azospirillum sp. B510] gi|288912006|dbj|BAI73495.1| N utilization substance protein A [Azospirillum sp. B510] Length = 510 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 289/510 (56%), Positives = 373/510 (73%), Gaps = 16/510 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +ELLQ+ADAVA EK+IDRD VL M +IQKA RS YG DIR I+ +TGDI L R L Sbjct: 1 MELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHL 60 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VEN Q++L A+ R +G + DPLPP+DFGR+A Q+AKQVI+QKVR+AE Sbjct: 61 EVVETVENEATQVTLPYAQRRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R RQ+ E+KD+ GEI++G VKRVEYGNV VDLG ++ ++RRDE + RE+ + GDRV++YI Sbjct: 121 RKRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLGRAEAILRRDELLPREHFKNGDRVRAYI 180 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +DVR E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS Sbjct: 181 FDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHDS 240 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ TFV+NAL PA V KVVLD+D Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVVLDDDNH 300 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 RIEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R ++ + R+ FMQA+ Sbjct: 301 RIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSALFMQAL 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +VD++IAHLLVAEGF VEE+A V+ E+A IEGFDE A E++ RA +L+ D Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVETEELAEIEGFDESVADELKQRALAFLDVQDEQANL 420 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + ELGV + + + G ++ V LGENG+KT++DLA + D+L+ Sbjct: 421 RRLELGVEDIVAELTGFNATQLVKLGENGVKTLDDLADLAGDELV--------------E 466 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 L G +++ ++I+ AR W E E+ Sbjct: 467 ILGKDGPSEEEANAIIMAARAH--WFEGEE 494 >gi|163796764|ref|ZP_02190722.1| Transcription elongation factor [alpha proteobacterium BAL199] gi|159178018|gb|EDP62565.1| Transcription elongation factor [alpha proteobacterium BAL199] Length = 517 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 276/471 (58%), Positives = 363/471 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + +LEL+Q+AD VA +K IDR+ VL M +IQKA RS YG DIR I+ TG+I Sbjct: 3 IATQPKLELIQVADVVARDKGIDREEVLIAMEQAIQKAGRSKYGPDHDIRATIDRRTGEI 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SL R VVEE+E+ QI+L A+ DP+++IG V+S+PLPP+DFGR+A Q+AKQVI+Q Sbjct: 63 SLKRCTTVVEEIEDEISQITLAQAQKIDPALEIGSVISEPLPPIDFGRIAAQTAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVRE ER RQY E+KD+ GEII+G+VKRVEYGNV V++ ++ ++RRD + RE R GD Sbjct: 123 KVREFERQRQYEEYKDRSGEIINGSVKRVEYGNVTVEIQRAEAILRRDRLLPRETFRQGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++YI DVR E RGPQ+ LSRTHP+FM +LF EVPE+Y+GI+++KAV+RDPGSRAK+A Sbjct: 183 RIRAYIEDVRSEPRGPQIFLSRTHPEFMRQLFRQEVPEVYDGIIEIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL PA V+KVV Sbjct: 243 VISYDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSDDPATFVVNALAPAEVSKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L ED GRIEV+VP EQLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R+++F R+ Sbjct: 303 LHEDAGRIEVVVPDEQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESDRRKEEFRVRSD 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+++D++IA LLVAEGF VEE+A V + ++A IEGFD + A E+Q RA ++E Sbjct: 363 TFITALDIDDVIAGLLVAEGFTSVEEIADVDLEDLAEIEGFDVDIAGELQMRALNHVEAE 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L+ ELGV++E+ ++ + + VALGE G+KT++D A + D+LL Sbjct: 423 RVRLEALRTELGVTDEVAALEALSPAMLVALGEKGVKTLDDFADLASDELL 473 >gi|114329058|ref|YP_746215.1| transcription elongation factor NusA [Granulibacter bethesdensis CGDNIH1] gi|114317232|gb|ABI63292.1| n utilization substance protein A [Granulibacter bethesdensis CGDNIH1] Length = 512 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/467 (61%), Positives = 357/467 (76%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+ L R Sbjct: 11 SRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVRLSR 70 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+VRE Sbjct: 71 WTEAVEVVENEETQIPIHIARKFKPDIELGGHLVDPLPPIDFGRIAAQTAKQVIVQRVRE 130 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER RQY EFKD+VGEII+G VKR EYGN++VDLG S+ ++RRDE I+RE+ R GDRV++ Sbjct: 131 YERRRQYDEFKDRVGEIINGVVKRTEYGNLMVDLGKSEALLRRDELIARESFRNGDRVRA 190 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV S Sbjct: 191 YIYDVREEPRGPQIFLSRTHPNFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAVISR 250 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+DE+ Sbjct: 251 DQSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVMDEE 310 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT F+ Sbjct: 311 AGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTSLFVD 370 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VD++IA LLV EGF VEELA + E++ IEGFDE A E+ RA L + Sbjct: 371 ALDVDDVIAGLLVTEGFTTVEELAFSPVEELSEIEGFDENVAEELIRRAEVDLTRRANEM 430 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 K + LGV++E+ I + + VALGE G+KT++DLA + D+L+ Sbjct: 431 DDKRKALGVTDEIADIETLTPAMLVALGEKGVKTLDDLADLAGDELV 477 >gi|56694991|ref|YP_165337.1| transcription elongation factor NusA [Ruegeria pomeroyi DSS-3] gi|56676728|gb|AAV93394.1| transcription termination factor NusA [Ruegeria pomeroyi DSS-3] Length = 541 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 281/516 (54%), Positives = 373/516 (72%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV EE+ENY + ++ A+ + IG + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADEELENYQAEFTVDQAKQYMENPQIGDTFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEESARRQKEFESR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TNLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 R LG + L G+ ++ AL ++ +KT+ED A C+ +L GW+ Sbjct: 423 AQAKAALDNARALGAEDSLIQFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K DG L G + + M++ AR +GW++ Sbjct: 483 GQRV-KDDGILEPFGVSLEDAQDMVMTARVMLGWVD 517 >gi|163737947|ref|ZP_02145363.1| transcription elongation factor NusA [Phaeobacter gallaeciensis BS107] gi|163742658|ref|ZP_02150044.1| transcription elongation factor NusA [Phaeobacter gallaeciensis 2.10] gi|161384243|gb|EDQ08626.1| transcription elongation factor NusA [Phaeobacter gallaeciensis 2.10] gi|161388563|gb|EDQ12916.1| transcription elongation factor NusA [Phaeobacter gallaeciensis BS107] Length = 541 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/530 (53%), Positives = 387/530 (73%), Gaps = 8/530 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 + R+ VVE+ +ENY +++++ A+ DPS+ G V + +PP++ GR+A QSAKQ Sbjct: 63 TFTRVRTVVEDDALENYQAELTVEQAKQYMADPSV--GDVFVEEVPPVEMGRIAAQSAKQ 120 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 VI+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ Sbjct: 121 VILQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESY 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 RP DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSR Sbjct: 181 RPNDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V Sbjct: 241 AKIAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEV 300 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +KVVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F Sbjct: 301 SKVVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFE 360 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 RT+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +Y Sbjct: 361 ARTKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADY 420 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSE 475 LE R LGV + L G+ ++ AL ++GIKT+ED A C+ +L GW+ Sbjct: 421 LEAQAKAAIDAARALGVEDSLIDFDGLTPQMVEALAKDGIKTLEDFATCADWELAGGWTT 480 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 NKG + K DG L + +++++ AR +GW++ ++ + DA Sbjct: 481 NKGERV-KDDGILEPFDVSLEDAQTLVMTARVLLGWVDPTELEADAEDDA 529 >gi|89067479|ref|ZP_01154992.1| transcription elongation factor NusA [Oceanicola granulosus HTCC2516] gi|89047048|gb|EAR53102.1| transcription elongation factor NusA [Oceanicola granulosus HTCC2516] Length = 542 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/523 (54%), Positives = 379/523 (72%), Gaps = 4/523 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRRTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDDPKVGDQYIEEIPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IGVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE TA E+Q RAR+ L+ Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEGTAQELQARARDVLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + +K RELGV + L + G+ + +AL E+G+KT+ED A C+ +L GW+ Sbjct: 423 EQNRVALEKARELGVEDSLVNFEGLTPAMVLALAEDGVKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G + K DG L ++ + M++ AR +GW++ + + E Sbjct: 483 GERV-KDDGVLEKFDVSLEEAQDMVMTARVLLGWVDPDDLMPE 524 >gi|259417192|ref|ZP_05741111.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B] gi|259346098|gb|EEW57912.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B] Length = 538 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 277/516 (53%), Positives = 379/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++ A+ S +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMESPSVGDTIVDEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 R +G + L G+ ++ AL ++ +K++ED A C+ +L GW+ Sbjct: 423 AQAKAALDNARSMGAEDSLIDFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ +++++ AR +GW++ Sbjct: 483 GERV-KDEGILEPFDMSLEEAQNLVMTARIMLGWVD 517 >gi|254510431|ref|ZP_05122498.1| transcription termination factor NusA [Rhodobacteraceae bacterium KLH11] gi|221534142|gb|EEE37130.1| transcription termination factor NusA [Rhodobacteraceae bacterium KLH11] Length = 537 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 282/516 (54%), Positives = 379/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ + ++G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQAKQYMEAPEVGQVFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR E+GNVIVDLG ++ V+RR++ I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGAVKREEFGNVIVDLGGAEAVLRRNDKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK Sbjct: 183 NDRVRAYIKEVRREVRGHQIFLSRTAPEFMAELFKMEVPEIYDGIIEVKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TE E+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEAEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RARE+LE Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 R LGV + L G+ ++ AL ++ +KT+ED A C+ +L GW+ Sbjct: 423 AQAKAALDAARALGVEDSLIEFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G I K DG L G ++ + +++ AR +GW++ Sbjct: 483 GERI-KDDGVLEPFGVTLEEAQDLVMTARIMLGWVD 517 >gi|126734454|ref|ZP_01750201.1| transcription termination factor NusA, putative [Roseobacter sp. CCS2] gi|126717320|gb|EBA14184.1| transcription termination factor NusA, putative [Roseobacter sp. CCS2] Length = 538 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 280/519 (53%), Positives = 379/519 (73%), Gaps = 4/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG + Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVAIDRKTGKAT 63 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 R+ VVEE +ENY + ++ A++ ++G + +PP++ GR+A QSAKQVI+ Sbjct: 64 FTRVRTVVEEEELENYQAEFTVAQAKEYMEDPEVGQQFIEEVPPVELGRIAAQSAKQVIL 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE RP Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGREAYRPN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +I +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK+ Sbjct: 184 DRIRCFIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+KV Sbjct: 244 AVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F RT Sbjct: 304 VLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFELRT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +++DE A LLV+EGF ++EE+A V++ E+ IEG DE+TA E+Q RAR+YLE Sbjct: 364 KLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIEGVDEDTASELQARARDYLEA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENKG 478 + R LGV + L + G+ + ALG++G+KT+ED A C+ +L GW+ G Sbjct: 424 KAKEAMEAARALGVEDSLANFEGLTPAMLEALGQDGVKTLEDFATCADWELAGGWTTVDG 483 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + K DG L ++ + M++ AR +GW++ +++ Sbjct: 484 ERV-KDDGVLEPFEVSLEEAQDMVMTARVMLGWVDPDEL 521 >gi|83595108|ref|YP_428860.1| transcription elongation factor NusA [Rhodospirillum rubrum ATCC 11170] gi|83578022|gb|ABC24573.1| NusA antitermination factor [Rhodospirillum rubrum ATCC 11170] Length = 516 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/470 (59%), Positives = 371/470 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V +R EL+Q+AD VA +KSI+R+ V + M +IQKA RS YG DIR I+ +TG+I Sbjct: 5 VGMSRPELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R +EVVEEVEN QI+L A+ + I++G + DPLPP+DFGR+A Q+AKQVI+QK Sbjct: 65 LARYIEVVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ E+KD++GEII+G VKRVE+GNVIVD+G ++ ++RRDE I RE+ + GDR Sbjct: 125 VRDAERERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGRAEALLRRDEVIPREHFKNGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI DVR+E RGPQ+ LSRTH QFM KLF EVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 185 IRAYIMDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D +IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVL Sbjct: 245 LSNDHAIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLAS+LTGW IDI+TE E+S RQ +F RTQ Sbjct: 305 DEEANRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQA 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IAHLLV EGF VE++A V I+E++ IEGFDE+ A E+Q RA+ +L + Sbjct: 365 FIEALDVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++ +ELGV +E+ I G+ + + VALGE G+KT++DL + D+L+ Sbjct: 425 RLNEERRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELI 474 >gi|163745072|ref|ZP_02152432.1| transcription elongation factor NusA [Oceanibulbus indolifex HEL-45] gi|161381890|gb|EDQ06299.1| transcription elongation factor NusA [Oceanibulbus indolifex HEL-45] Length = 542 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 284/527 (53%), Positives = 381/527 (72%), Gaps = 7/527 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV+IN +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVDINRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E++ENY + ++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADEDLENYQAEFTVDQAKQYMAEPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF+++EE+A V++ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFSNLEEVAYVEVDELLVIDGVDEDTAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L GW+ Sbjct: 423 AQNKAALDNARALGVEDSLVEFEGLTPQMLEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI---EKEKVADEE 521 G + K DG L + ++MI+ AR +GW+ E E ADE+ Sbjct: 483 GERV-KDDGALEPFEVSLEDAQAMIMTARVMLGWVDPTELEGDADED 528 >gi|84514878|ref|ZP_01002241.1| transcription elongation factor NusA [Loktanella vestfoldensis SKA53] gi|84511037|gb|EAQ07491.1| transcription elongation factor NusA [Loktanella vestfoldensis SKA53] Length = 533 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 282/519 (54%), Positives = 374/519 (72%), Gaps = 4/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG + Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVNIDRKTGRAT 63 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 R+ VV + VENY + ++ A+D IG S+ +PP++ GR+A QSAKQVI+ Sbjct: 64 FTRVRTVVADDAVENYQAEFTVAQAKDYMTDPQIGQEYSEEVPPVELGRIAAQSAKQVIL 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G+ + V+RR+E I RE RP Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGSGEAVLRRNEKIGREAYRPN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ YI +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK+ Sbjct: 184 DRIRCYIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGVIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTKV Sbjct: 244 AVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVTKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ G+IEV+VP EQLSLAIGRRGQNVRLAS LTG IDI+TEEE+S RQ +F RT Sbjct: 304 VLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASMLTGLDIDILTEEEESKRRQAEFETRT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +++DE A LLVAEGF ++EE+A V+ E+ IEG DE TA E+Q RAR+YLE Sbjct: 364 KLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVEQDELLVIEGVDEGTAGELQARARDYLEA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENKG 478 GV + L G+ ++ ALG++G+KT+ED A C+ +L GW+ G Sbjct: 424 QAKKAMDAAIATGVEQSLIDFEGLTPQMLEALGKDGVKTLEDFATCADWELAGGWTTVNG 483 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + K DG L ++ ++M++ AR +GW++ +++ Sbjct: 484 ERV-KDDGVLEPFDVSLEEAQTMVMTARVMLGWVDPDEL 521 >gi|99082750|ref|YP_614904.1| transcription elongation factor NusA [Ruegeria sp. TM1040] gi|99039030|gb|ABF65642.1| NusA antitermination factor [Ruegeria sp. TM1040] Length = 538 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/516 (53%), Positives = 377/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++ A+ +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMEDPKVGDTIVDEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 R +GV + L G+ ++ AL ++ +K++ED A C+ +L GW+ Sbjct: 423 AKAKAALDNARSMGVEDSLIDFDGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K +G L ++ +++++ AR +GW++ Sbjct: 483 GERV-KDEGILEPFDVSLEEAQNLVMTARIMLGWVD 517 >gi|84684618|ref|ZP_01012519.1| transcription elongation factor NusA [Maritimibacter alkaliphilus HTCC2654] gi|84667597|gb|EAQ14066.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2654] Length = 539 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/515 (53%), Positives = 376/515 (73%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ + +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDNPVVGDTIVDEVPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYVKDVRRETRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V K Sbjct: 243 IGVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVAK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR++L+ Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTANELQARARDFLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + + LGV + L G+ ++ AL ++G+ T+ED A C+ +L G Sbjct: 423 EQNRKALENAKALGVQDSLIGFEGLTPQMIEALAKDGVFTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L ++ ++MI+ AR ++GW++ Sbjct: 483 GERSKDDGVLEPFDVGLEEAQNMIMTARIQLGWVD 517 >gi|254486422|ref|ZP_05099627.1| transcription termination factor NusA [Roseobacter sp. GAI101] gi|214043291|gb|EEB83929.1| transcription termination factor NusA [Roseobacter sp. GAI101] Length = 537 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 279/515 (54%), Positives = 376/515 (73%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + +IG S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEIGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG TIDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLTIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+ LE Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEATAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AKNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K +G L ++ + +I+ AR +GW++ Sbjct: 483 GVRTKDEGTLEPFEMTLEEAQHLIMTARVLLGWVD 517 >gi|85373514|ref|YP_457576.1| transcription elongation factor NusA [Erythrobacter litoralis HTCC2594] gi|84786597|gb|ABC62779.1| N-utilization substance protein A [Erythrobacter litoralis HTCC2594] Length = 557 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/470 (58%), Positives = 368/470 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANAVASEKMIDKAIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKSAQKLEEGAAIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFEEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRAIITKVERNNRGPQIFLSRAHPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDQATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F ER++ Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V + E+A+IEGFDEE A E+Q RA+E LE Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVAMEELAAIEGFDEELAEELQSRAQEALERQA 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +K+ RELGV ++L +P + ++ V LG++GIKT++DLA + D+L+ Sbjct: 425 EAYRKERRELGVEDDLAELPHLSEQMLVTLGKSGIKTLDDLADLATDELI 474 >gi|297717896|gb|ADI50091.1| transcription termination protein NusA [Candidatus Odyssella thessalonicensis L13] Length = 513 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/517 (53%), Positives = 378/517 (73%), Gaps = 16/517 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S R E+L +A+AVA EK I+RD VL M +IQKAAR+ YG D+R +++ TGD++ Sbjct: 13 ISQPRHEILAVAEAVAREKGIERDEVLYAMEQAIQKAARAKYGFEKDVRAKVDKHTGDVN 72 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++++L VVEEVE+ QISL A D S ++G + +PLPP++FGRVA QSA+QVIIQK Sbjct: 73 IWKVLTVVEEVEDPLVQISLTDAHQIDKSYNVGDELVEPLPPIEFGRVAAQSARQVIIQK 132 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER QY EFKD+ +IISG VKRVE+GNVIVDLG ++G++RR++ I RE R GDR Sbjct: 133 VRDAERAHQYAEFKDRANQIISGVVKRVEFGNVIVDLGRAEGILRREDLIQREVFRSGDR 192 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ DVR + RGP V LSRTHPQFM +LF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 193 VRAYVSDVRPDARGPMVSLSRTHPQFMARLFESEVPEIYDGVIEIKSVARDPGSRAKIAV 252 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +++D SIDPVG+CVG+RG RVQAVVTEL+ EKIDIV WS + ATFV+NAL PA V KVVL Sbjct: 253 YTADPSIDPVGSCVGLRGVRVQAVVTELQGEKIDIVPWSSNPATFVVNALAPAEVIKVVL 312 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ R++++V ++QLSLAIGRRGQNVRLASQLTGW IDI+TEE+++ R +++N RTQ Sbjct: 313 DEEAHRVDMVVAEDQLSLAIGRRGQNVRLASQLTGWNIDIMTEEQEAKLRTEEYNTRTQL 372 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE+IA LL A+GF VEEL+ + E+ +IEGFDE A EIQ RA ++E Sbjct: 373 FMNALDVDEVIAQLLAADGFTTVEELSFAPLEELTAIEGFDEAIAQEIQSRALSFVEQRA 432 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 +K ++LGVSEE+ I G+ +++ + L E+ IK+++D A S D+ L ++ + Sbjct: 433 KASLEKAKDLGVSEEILEIDGMTAEMLLKLAEHNIKSLDDFADLSGDEFLEIAQEDQLTL 492 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 E Q +MI+ AR W ++E A Sbjct: 493 E--------------QANAMIMAARAH--WFDEEPKA 513 >gi|255262084|ref|ZP_05341426.1| transcription elongation factor NusA [Thalassiobium sp. R2A62] gi|255104419|gb|EET47093.1| transcription elongation factor NusA [Thalassiobium sp. R2A62] Length = 538 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 284/516 (55%), Positives = 375/516 (72%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVEE +ENY + +++ A+ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEEEELENYQAEFTVEQAKQYMEDPEVGQAFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKDK G II+ VKR EYGNVIVD+G+ + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDKAGTIINALVKREEYGNVIVDVGSGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM KLF MEVPEIY+ I+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTAPEFMAKLFEMEVPEIYDNIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEEDS RQ +F R Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEDSKRRQAEFETR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR++LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVEELLVIDGVDEGTAGELQARARDFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 + + R LGV L G+ ++ AL E+G+KT+ED A C+ +L GW+ Sbjct: 423 AQNKKALENARALGVENSLVEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTQD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G I K DG L ++ + M++ AR +GW++ Sbjct: 483 GERI-KDDGVLEKFEISLEEAQDMVMTARIMLGWVD 517 >gi|83953120|ref|ZP_00961842.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1] gi|83842088|gb|EAP81256.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1] Length = 546 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/515 (53%), Positives = 375/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K +G L + + +I+ AR +GW++ Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVD 517 >gi|83942070|ref|ZP_00954532.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36] gi|83847890|gb|EAP85765.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36] Length = 542 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/515 (53%), Positives = 375/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K +G L + + +I+ AR +GW++ Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVD 517 >gi|86136807|ref|ZP_01055385.1| transcription elongation factor NusA [Roseobacter sp. MED193] gi|85826131|gb|EAQ46328.1| transcription elongation factor NusA [Roseobacter sp. MED193] Length = 541 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/516 (53%), Positives = 377/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ + +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRSVVEDEALENYQAEMTVEQAKQYMANPAVGDTFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +Q+VREAERDRQ+ EF+D+ G II+ VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQRVREAERDRQFEEFQDRAGTIINALVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+Q+KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIQIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISNDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNDDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D+ TA E+Q RAR++LE Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELTVIDGVDDGTAEELQARARDFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 R LG + L G+ + AL ++ I T+ED A C+ +L GW+ + Sbjct: 423 AKAKAAIDAARALGAEDSLIQFDGLTPPMVEALAKDEILTLEDFATCADWELAGGWTNDN 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G I K DG L G ++ + +++ AR +GW++ Sbjct: 483 GERI-KDDGILEPFGMSLEEAQELVMTARVMLGWVD 517 >gi|110677786|ref|YP_680793.1| transcription elongation factor NusA [Roseobacter denitrificans OCh 114] gi|109453902|gb|ABG30107.1| transcription termination factor NusA, putative [Roseobacter denitrificans OCh 114] Length = 538 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 276/515 (53%), Positives = 375/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDEDTANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L ++ + +I+ AR +GW++ Sbjct: 483 GERSKDDGVLEPFDVTLEEAQDLIMTARVMLGWVD 517 >gi|149185835|ref|ZP_01864150.1| transcription elongation factor NusA [Erythrobacter sp. SD-21] gi|148830396|gb|EDL48832.1| transcription elongation factor NusA [Erythrobacter sp. SD-21] Length = 554 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 287/534 (53%), Positives = 388/534 (72%), Gaps = 19/534 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKAAQKLEADARIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EF+D+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFNEFQDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALITKVERNNRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDGATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S RQK+F ER++ Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKRQKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V++ E+ASIEGFDEE A E+Q RA+E L+ + Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVELEELASIEGFDEELAEELQSRAQEALDRQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------W 473 ++ +ELGV + L +P + + V LG+ G+KT++D+A + D+L+ Sbjct: 425 AAHREVRQELGVDDALAELPHMTEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 474 SENKGGNIEKFD---------GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + N G + D G L G ++Q +I+ AR W E E A Sbjct: 485 NNNPDGPPMRRDRPMREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEDEA 536 >gi|260431715|ref|ZP_05785686.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis ITI-1157] gi|260415543|gb|EEX08802.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis ITI-1157] Length = 560 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 283/537 (52%), Positives = 383/537 (71%), Gaps = 25/537 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDR-DPSID--------------------IGGVV 97 + R+ VV EE+ENY ++++ AR +PS D +G V+ Sbjct: 63 TFTRVRTVVDDEELENYQAEMTVDQARAYFEPSKDGRAVWLRDGQPIEDFSTGPQVGDVL 122 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + +PP++ GR+A QSAKQVI+QKVREAERDRQY +FKD+VG II+G VKR E+GNVIVD Sbjct: 123 QEEVPPVEMGRIAAQSAKQVILQKVREAERDRQYEDFKDRVGTIINGAVKREEFGNVIVD 182 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 LG ++ V+RR++ I RE+ RP DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVP Sbjct: 183 LGGAEAVLRRNDKIGRESYRPNDRVRAYIKEVRREPRGHQIFLSRTAPEFMAELFKMEVP 242 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+GI+++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ Sbjct: 243 EIYDGIIEIKAVARDPGSRAKIAVISHDNSIDPVGACVGMRGSRVQAVVNELQGEKIDII 302 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 W+ D TF++NAL+PA V+KVVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG Sbjct: 303 PWNEDQPTFLVNALQPAEVSKVVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGL 362 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI+TE E+S RQK+F RT+ FM ++++DE A LLVAEGF ++EE+A V++ E+ Sbjct: 363 DIDIMTEAEESARRQKEFEARTKLFMDSLDLDEFFAQLLVAEGFTNLEEVAYVELDELLV 422 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 I+G DE TA E+Q RAR+ +E R LG + L G+ ++ AL ++G+K Sbjct: 423 IDGVDEGTAQELQARARDVIEAQAKAALDNARALGAEDSLIEFEGLTPQMVEALAKDGVK 482 Query: 458 TMEDLAGCSVDDLL-GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 T+ED A C+ +L GW+ G + K DG L G ++ + +++ AR +GW++ Sbjct: 483 TLEDFATCADWELAGGWTTVDGQRV-KDDGILEPFGVTLEEAQDLVMTARVMLGWVD 538 >gi|163733005|ref|ZP_02140449.1| transcription elongation factor NusA [Roseobacter litoralis Och 149] gi|161393540|gb|EDQ17865.1| transcription elongation factor NusA [Roseobacter litoralis Och 149] Length = 538 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 275/515 (53%), Positives = 375/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRAGSIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ LE Sbjct: 363 TQLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDADTANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAAIESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L ++ + +I+ AR +GW++ Sbjct: 483 GERSKDDGVLEPFEMTLEEAQDLIMTARVMLGWVD 517 >gi|89052531|ref|YP_507982.1| transcription elongation factor NusA [Jannaschia sp. CCS1] gi|88862080|gb|ABD52957.1| NusA antitermination factor [Jannaschia sp. CCS1] Length = 590 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 289/565 (51%), Positives = 386/565 (68%), Gaps = 53/565 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVA------------------------------RD-- 86 + R+ V +E +EN ++ L A RD Sbjct: 63 TFTRVRTVADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRDVR 122 Query: 87 ----RDPSID---------------IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 R P+ + IG +++D +PP++ GR+A QSAKQVI+QKVREAER Sbjct: 123 RFVMRKPTENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREAER 182 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DRQ+ EFKD+VGEII+G VKR EYGNVIVD+G+ + +RR+E I RE R GDR++ YI Sbjct: 183 DRQFAEFKDRVGEIINGVVKREEYGNVIVDVGSGEAQLRRNEKIGREAYRNGDRIRCYIK 242 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK+AV S D+ Sbjct: 243 DVRRENRGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNG 302 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVVLDED G+ Sbjct: 303 IDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGK 362 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F ERT+ FM ++ Sbjct: 363 IEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLD 422 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +DE A LLV+EGF +EE+A V+ E+ I+G DE TA E+Q RAR+YLE + +K Sbjct: 423 LDEFFAQLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLALEK 482 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 +E+GV E L + G+ ++ VALGE+G+KT+ED A C+ +L G +GG K DG Sbjct: 483 AKEMGVEESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDDGL 542 Query: 488 LSSLGTPKDQVESMIIHARYKMGWI 512 L ++ ++M++ AR ++GW+ Sbjct: 543 LEPFEVSLEEAQNMVMTARLQLGWV 567 >gi|254438705|ref|ZP_05052199.1| NusA N-terminal domain family [Octadecabacter antarcticus 307] gi|198254151|gb|EDY78465.1| NusA N-terminal domain family [Octadecabacter antarcticus 307] Length = 537 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 279/527 (52%), Positives = 378/527 (71%), Gaps = 6/527 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E +ENY + +++ AR+ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVAEAELENYQAEFTVEQAREYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++++++DE A LLV+EGF +EE+A V + E+ I+G D +TA E+Q RAR+ +E Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVDVDELLVIDGVDADTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + RELGV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 AKNNKAMENARELGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L ++ ++MI+ AR +GW++ D+ V+DA Sbjct: 483 GERTKDDGSLEPFEVSLEEAQTMIMTARVMLGWVD----PDDLVKDA 525 >gi|241761099|ref|ZP_04759188.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374718|gb|EER64179.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 538 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 282/518 (54%), Positives = 385/518 (74%), Gaps = 9/518 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+ Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGASVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+ Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++ Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE + Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------E 475 +++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+ Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + N E+ DG L+ G ++Q +I+ AR W + Sbjct: 485 HSSDNNEE-DGILAEYGLSQEQGNEIIMAARAH--WFD 519 >gi|260752935|ref|YP_003225828.1| transcription elongation factor NusA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856277|ref|YP_162291.2| transcription elongation factor NusA [Zymomonas mobilis subsp. mobilis ZM4] gi|258552298|gb|ACV75244.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775273|gb|AAV89180.2| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 538 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 282/518 (54%), Positives = 385/518 (74%), Gaps = 9/518 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+ Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGAAVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+ Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++ Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE + Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------E 475 +++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+ Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + N E+ DG L+ G ++Q +I+ AR W + Sbjct: 485 HSSDNNEE-DGILAEYGLSQEQGNEIIMAARAH--WFD 519 >gi|332188268|ref|ZP_08389995.1| transcription termination factor NusA [Sphingomonas sp. S17] gi|332011664|gb|EGI53742.1| transcription termination factor NusA [Sphingomonas sp. S17] Length = 538 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 284/525 (54%), Positives = 384/525 (73%), Gaps = 7/525 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ EL+ IA+AVA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P +GD+ Sbjct: 5 ISANKAELIAIANAVASEKMIDKGIVIEAMEDAIQRAARARYGAENDIRAKLDPNSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE+V++Y QI LK A IG + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVEQVDDYYKQIDLKGAEKLQKGAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKD+ GEII+G VKRVE+G+++VDLG ++GVIRRD+ I RE +R DR Sbjct: 125 VRDAERDRQYDEFKDRQGEIITGVVKRVEFGHIVVDLGRAEGVIRRDQQIPREVVRVNDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 IRSLILNVRRENRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+ Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE + S RQK+F ++ Sbjct: 305 DEEEDRIEVVVPDDQLSLAIGRRGQNVRLASQLTAKAIDILTEADASEKRQKEFVANSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V++ E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELAAIEGFDEDLAQELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL----GWSENK 477 + + R LGV + L +P + + V LG+ GIKT++DLA + D+L+ + Sbjct: 425 QAARDERRALGVEDALAEMPYLTEAMLVTLGKAGIKTLDDLADLATDELVEKKRSEPRRR 484 Query: 478 GGNIEKF---DGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G + + G L+ G +Q +I+ AR E E VA+ Sbjct: 485 GDDAPRAAPKGGILAEYGLSDEQGNEIIMAARAHWFTDEDEPVAE 529 >gi|83950734|ref|ZP_00959467.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM] gi|83838633|gb|EAP77929.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM] Length = 544 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 283/516 (54%), Positives = 378/516 (73%), Gaps = 4/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVEE +ENY +++++ A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEEEELENYQAELTVEQAKQYLDDPKVGDQYIEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGMVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 +R++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NERIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQ++F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQREFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEDTAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-GWSENK 477 ++ RELGV + L G+ ++ AL E+G+KT+ED A C+ +L GW+ Sbjct: 423 ARAKAALERARELGVEDSLVEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTMQD 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + K DG L ++ ++M++ AR +GW++ Sbjct: 483 GQRV-KDDGILEPFDVSLEEAQAMVMTARVMLGWVD 517 >gi|254700792|ref|ZP_05162620.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] gi|261751301|ref|ZP_05995010.1| transcription elongation protein nusA [Brucella suis bv. 5 str. 513] gi|261741054|gb|EEY28980.1| transcription elongation protein nusA [Brucella suis bv. 5 str. 513] Length = 356 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 259/354 (73%), Positives = 309/354 (87%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEF 356 >gi|296285012|ref|ZP_06863010.1| transcription elongation factor NusA [Citromicrobium bathyomarinum JL354] Length = 557 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 285/535 (53%), Positives = 383/535 (71%), Gaps = 20/535 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANRAELLAIANSVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGAAVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ L+R HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALISKVERNNRGPQIFLTRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS + ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEEEATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F R++ Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAARSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V++ E+A IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVQLDELAMIEGFDEELAEELQSRATEALERQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW-------- 473 ++ RELGV + L +P + + V LG+ G+KT++D+A + D+L+ Sbjct: 425 AAHREARRELGVEDALADLPHLSEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 474 -SENKGGNIEKFD---------GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + N G + D G L G ++Q +I+ AR W E E+ A Sbjct: 485 NNANADGPPMRRDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEEPA 537 >gi|296533459|ref|ZP_06896041.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC 49957] gi|296266214|gb|EFH12257.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC 49957] Length = 525 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 270/459 (58%), Positives = 347/459 (75%), Gaps = 2/459 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+ R ELLQ+A+AVA EK I+RD VL M +IQKA R+ YG DIR I+ TG++ Sbjct: 5 VAIARPELLQVAEAVAREKMIERDEVLEAMEQAIQKAGRAKYGHEKDIRAVIDRRTGEVK 64 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L R EVVE+ VEN QI ++A+ P I +G + DPLPP+DFGR+A Q+AKQVI+ Sbjct: 65 LSRWTEVVEQEPVENEATQIPHRIAQKIKPGIAVGEFIVDPLPPIDFGRIAAQTAKQVIV 124 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 Q+VRE ER +Q+ E+KD+VGEII+G VKR EYGN++VDLG ++ ++RRDETI RE R G Sbjct: 125 QRVREVERSKQFNEYKDRVGEIINGVVKRTEYGNLMVDLGRAEALLRRDETIPREAFRNG 184 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+ Sbjct: 185 DRVRAYIYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKM 244 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D+ TFV+NAL PA V+KV Sbjct: 245 AVISRDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSADNPTFVVNALAPAEVSKV 304 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+D+D R+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT Sbjct: 305 VMDDDSKRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRT 364 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F++A++VD++IA LLV EGF +EEL V ++A IEGFDE A E++ R++ +L+ Sbjct: 365 GLFVEALDVDDVIAGLLVTEGFGSIEELMEVPDEDLAEIEGFDENVAAELKRRSQAFLDR 424 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 D L +K + LGV + + G + V LGE G+KT Sbjct: 425 RDQELDEKRQALGVEDAVAEAGGFTPAMLVTLGEKGVKT 463 >gi|326388032|ref|ZP_08209636.1| transcription elongation factor NusA [Novosphingobium nitrogenifigens DSM 19370] gi|326207533|gb|EGD58346.1| transcription elongation factor NusA [Novosphingobium nitrogenifigens DSM 19370] Length = 551 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 283/525 (53%), Positives = 377/525 (71%), Gaps = 27/525 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P +GD+ Sbjct: 5 ISANRAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEHVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM +LF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILRVERTNRGPQIFLSRAHPDFMKRLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++ Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFTERSKT 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGF+++EE+ + I+E+A+IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFSELEEVGYIDIAELATIEGFDEELATELQNRALEALERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW-------- 473 +++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 EGQRQERRALGVEDALADLPHLTEAMLVTLGKAGIKTLDDLADLATDELIARKRGGEQRR 484 Query: 474 ------------SENKGGNIEKFDGFLSSLGTPKDQVESMIIHAR 506 SE+KG G L G ++Q +I+ AR Sbjct: 485 RGGNDRRDRSERSEDKG-------GVLGEYGLNEEQGNEIIMAAR 522 >gi|103486103|ref|YP_615664.1| transcription elongation factor NusA [Sphingopyxis alaskensis RB2256] gi|98976180|gb|ABF52331.1| NusA antitermination factor [Sphingopyxis alaskensis RB2256] Length = 548 Score = 538 bits (1386), Expect = e-151, Method: Compositional matrix adjust. Identities = 285/522 (54%), Positives = 382/522 (73%), Gaps = 9/522 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ + ++IQ+AAR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAIEEAIQRAARARYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ L + IG + DPLP +D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVETVEDYFKQVDLAAGQKLQKDARIGDFIVDPLPAVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREA+R+RQY EFKD+ GEII+G VK VE+G+++V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VREADRERQYQEFKDRAGEIITGVVKSVEFGHIVVNLGRAEGVIRRDQQIPRELMRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I VR E RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILSVRSETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISYDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVQRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQ++F ER+ Sbjct: 305 DEDDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKQIDIMTEADASEKRQREFVERSTM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE +A LLVAEGF+++EE+A V + E+ASIEGFDEE A E+Q RA E LE + Sbjct: 365 FQEELDVDETLAQLLVAEGFSELEEVAYVPLDELASIEGFDEELAQELQSRAAEGLERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--WSENKGG 479 + + RELGV + L IP + + V LG+ GI+T++DLA + D+L+ ++N+ G Sbjct: 425 EAARAERRELGVEDALADIPHLTEAMLVTLGKAGIRTLDDLADLATDELIAKKRTDNRRG 484 Query: 480 -----NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 E G L G ++Q +I+ AR W + E+ Sbjct: 485 PARSERAEDKGGVLGEYGLSEEQGNEIIMAARAH--WFDDEE 524 >gi|144897846|emb|CAM74710.1| transcription elongation protein [Magnetospirillum gryphiswaldense MSR-1] Length = 503 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 275/467 (58%), Positives = 353/467 (75%), Gaps = 1/467 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I L R Sbjct: 9 RPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEIQLARY 68 Query: 66 LEVVEEVENY-TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +EVVEE Q+ L A ++P G + DPLPP+DFGR+A Q+AKQVI+QKVR+ Sbjct: 69 IEVVEEEVENEATQLPLARALKKNPGAKAGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRD 128 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GDRV++ Sbjct: 129 AERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGDRVRA 188 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI DVR+E RGPQ+ LSRT P FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S Sbjct: 189 YIADVRQEPRGPQIFLSRTSPIFMSKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVISH 248 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + ATFV+NAL PA V+KVVLD++ Sbjct: 249 DSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSGEYATFVVNALAPAEVSKVVLDDE 308 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +EV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE E+S R ++F R++ F+ Sbjct: 309 THTMEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDIMTEAEESERRNEEFRSRSKLFID 368 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VD++IAHLLV EGF VEE+A V + +++ IEGFDE+ A E+Q RAR +L D Sbjct: 369 ALDVDDVIAHLLVTEGFTTVEEVAYVPLEDLSGIEGFDEDVAAELQQRARTFLAEQDERY 428 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++LGVS+E+ ++ G+ + V LG IKT++DL + D+L+ Sbjct: 429 DAMRKDLGVSDEMAALEGLSPAMLVKLGHREIKTLDDLGDLASDELI 475 >gi|85710531|ref|ZP_01041595.1| transcription elongation factor NusA [Erythrobacter sp. NAP1] gi|85687709|gb|EAQ27714.1| transcription elongation factor NusA [Erythrobacter sp. NAP1] Length = 547 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/471 (57%), Positives = 364/471 (77%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD++ Sbjct: 5 ISANKAELLAIANSVASEKMIDKTIVIEAMEEAIQKSARNRYGAENDIRAKLDPNTGDLT 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGASVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFEEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR P FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALITKVERNNRGPQIFLSRAAPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVARVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S R K+F ER++ Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGHQIDIMTEEEASEKRSKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA +EE+A V+++E+A+IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFAMLEEVAYVEMAELAAIEGFDEELAEELQSRAIEALERQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 + RELGV + + +P ++ + V LG+ G+KT++D+A + D+L+ Sbjct: 425 EAHRTARRELGVEDAIAELPHLNEAMLVTLGKAGLKTLDDVADLATDELIA 475 >gi|258543556|ref|YP_003188989.1| transcription elongation factor NusA [Acetobacter pasteurianus IFO 3283-01] gi|329113267|ref|ZP_08242050.1| Transcription elongation protein NusA [Acetobacter pomorum DM001] gi|256634634|dbj|BAI00610.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-01] gi|256637690|dbj|BAI03659.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-03] gi|256640744|dbj|BAI06706.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-07] gi|256643799|dbj|BAI09754.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-22] gi|256646854|dbj|BAI12802.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-26] gi|256649907|dbj|BAI15848.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-32] gi|256652897|dbj|BAI18831.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655951|dbj|BAI21878.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-12] gi|326697408|gb|EGE49066.1| Transcription elongation protein NusA [Acetobacter pomorum DM001] Length = 514 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 276/470 (58%), Positives = 356/470 (75%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAV+ EK I+R+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVSREKGIEREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R EVV+EVEN QI+L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEVVDEVENEDTQIALSIARKFRPEIQAGEYLIDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE R DR Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLLVEIGSAEALLRRDELIPRETFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F RT Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+ IEGFDE E+ RA YL + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADPDELIGIEGFDESVVQELVQRAESYLVQQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 L + +ELGV +++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 423 QKLDDRRKELGVVDDIADMGVFTNQMLVTLGEKGVKTLDDLADLAGDELV 472 >gi|162147158|ref|YP_001601619.1| transcription elongation factor NusA [Gluconacetobacter diazotrophicus PAl 5] gi|209544214|ref|YP_002276443.1| transcription elongation factor NusA [Gluconacetobacter diazotrophicus PAl 5] gi|161785735|emb|CAP55306.1| Transcription elongation protein nusA [Gluconacetobacter diazotrophicus PAl 5] gi|209531891|gb|ACI51828.1| NusA antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 523 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 281/470 (59%), Positives = 362/470 (77%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAVA EK+IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVAREKAIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFKPEIQLGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYDEFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAYADPDELAEIEGFDEDVAGELVRRAEGFLARRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 L +K R LGVS+++ ++ +++ V LGE G+K+++DLA + D+L+ Sbjct: 423 DELDEKRRGLGVSDDVAALGVFSNQMLVTLGEKGVKSLDDLADLAGDELV 472 >gi|330813317|ref|YP_004357556.1| transcription termination protein NusA [Candidatus Pelagibacter sp. IMCC9063] gi|327486412|gb|AEA80817.1| transcription termination protein NusA [Candidatus Pelagibacter sp. IMCC9063] Length = 514 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/502 (52%), Positives = 365/502 (72%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++IADAVA EKSI +D+VL+ M +I+KAA++ YG ++I V I+ TG I L R L+ Sbjct: 10 ELIRIADAVADEKSISKDLVLTSMESAIEKAAKTRYGNENEIYVVIDRATGKIELGRKLK 69 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N +I L A +++ I +V++ LPP+DFGR+A Q+AKQVI ++R+AER Sbjct: 70 VVEKVMNTHSEIGLGEALEKNSEAKIDDIVNEELPPVDFGRIAAQTAKQVISHQIRDAER 129 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DRQ+ EFKDKVGEI+SG VKR EYGNVIVDL S+ +IRR+E I RENL+ GDR+K+Y Y Sbjct: 130 DRQFEEFKDKVGEILSGIVKRSEYGNVIVDLQKSEAIIRREELIPRENLKNGDRIKAYCY 189 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVRRE +GPQ+ LSR HPQF+ KLFH EVPEIY G + +K+V+RDPGSRAK+ V S DSS Sbjct: 190 DVRRESKGPQIFLSRAHPQFLAKLFHQEVPEIYEGTIGIKSVARDPGSRAKICVQSKDSS 249 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQA+V EL+ EKIDI+ W+ D+++ V +AL PA V KV++ ED R Sbjct: 250 IDPVGACVGMRGSRVQAIVNELQGEKIDIINWTEDASSLVKSALSPAEVMKVIIAEDDRR 309 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IEV++ ++ LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F + T+ ++++ Sbjct: 310 IEVVIDEDNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQTEFKDNTEKLVKSLE 369 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +D +A LLVAEGF + +A + E IEGFDEET+ E+Q RA+EY++ + KK Sbjct: 370 IDTTMAQLLVAEGFPTINAIANASLPEFLKIEGFDEETSTELQNRAKEYIQEEAEEVSKK 429 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 ++ELG+ ++L + G+ + + LGE+ IKT++D A + D+L+G + G EKFDG Sbjct: 430 VKELGIEDDLATHKGLSLGMLLILGEDNIKTLKDFAELATDELIGGYDEIKGKREKFDGI 489 Query: 488 LSSLGTPKDQVESMIIHARYKM 509 L + + +I+ AR K+ Sbjct: 490 LEEFDISRKDADDLIMRARKKV 511 >gi|330991197|ref|ZP_08315149.1| Transcription elongation protein nusA [Gluconacetobacter sp. SXCC-1] gi|329761690|gb|EGG78182.1| Transcription elongation protein nusA [Gluconacetobacter sp. SXCC-1] Length = 523 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 285/520 (54%), Positives = 371/520 (71%), Gaps = 16/520 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ TGD+ Sbjct: 11 TSVARPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRRTGDVR 70 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 71 LSRWTEAVETVENEETQIPLYIARKFKPEIQLGEYLIDPLPPIDFGRIAAQTAKQVIVQR 130 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQ+ +FKD+VGEII+GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR Sbjct: 131 VREYERRRQFNDFKDRVGEIINGTVKRTEYGNLLVEIGDAEALLRRDELIPRESFRNSDR 190 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 191 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 250 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVG+RG RVQ VV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 251 ISRDAAIDPVGACVGVRGRRVQEVVKELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 310 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 311 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSSQ 370 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++VD++IA LLV EGF VEELA E+A+IEGFDE+ A E+ RA +L + Sbjct: 371 FVTSLDVDDVIAGLLVTEGFHSVEELAFADPEELANIEGFDEDVAGELVLRAERHLAQQE 430 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K RELGVS+++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 431 EQLDEKRRELGVSDDIAVLGVFTNQMLVTLGEKGVKTLDDLADLAGDELV---------- 480 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 L S +D +I+ AR W E + D E Sbjct: 481 ----EILGSDAIDEDAANEIIMAARAH--WFEGDDRGDAE 514 >gi|254452567|ref|ZP_05066004.1| transcription termination factor NusA [Octadecabacter antarcticus 238] gi|198266973|gb|EDY91243.1| transcription termination factor NusA [Octadecabacter antarcticus 238] Length = 538 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 274/515 (53%), Positives = 371/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E +ENY + +++ A++ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVAEAELENYQSEFTVEQAKEYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++++++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ +E Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVEVEELLVIDGVDADTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 AKNNKAMENARALGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L ++ + MI+ AR +GW++ Sbjct: 483 GERTKDDGSLEPFEVSLEEAQKMIMTARVMLGWVD 517 >gi|296114401|ref|ZP_06833055.1| transcription elongation factor NusA [Gluconacetobacter hansenii ATCC 23769] gi|295979162|gb|EFG85886.1| transcription elongation factor NusA [Gluconacetobacter hansenii ATCC 23769] Length = 516 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 280/470 (59%), Positives = 361/470 (76%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFRPEIQLGEHLIDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY +FKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYNDFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSNQ 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADADELAGIEGFDEDVASELVRRAEGFLARRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + +K R LGVS+++ ++ ++ V LGE G+KT++DLA + D+L+ Sbjct: 423 EEMDEKRRALGVSDDIAALGVFTVQMLVTLGEKGVKTLDDLADLAGDELV 472 >gi|262277759|ref|ZP_06055552.1| transcription termination factor [alpha proteobacterium HIMB114] gi|262224862|gb|EEY75321.1| transcription termination factor [alpha proteobacterium HIMB114] Length = 514 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 270/502 (53%), Positives = 367/502 (73%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++IADAVA EKSID+D+VLS M +I+KAAR+ YG+ ++I V I+ ETG I L R L+ Sbjct: 10 ELIRIADAVAAEKSIDKDLVLSSMETAIEKAARTRYGSENEIYVSIDRETGIIELGRKLK 69 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V +ISL A+ +DPS +IGG + + LPP+DFGR+A Q+AKQVI ++R+AER Sbjct: 70 VVEKVLESHSEISLDEAKQKDPSAEIGGEIKEELPPIDFGRIAAQTAKQVISVQIRDAER 129 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DRQ+ EFKDKVGEI+SG VKR E+GN+IVDL S+ +IRR+E I RENL+ GDRVK+Y Y Sbjct: 130 DRQFNEFKDKVGEILSGIVKRSEFGNIIVDLQKSEAIIRREELIPRENLKNGDRVKAYCY 189 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVRRE +GPQ+ LSR HPQF+ KLF EVPEIY G + +K+V+RDPGSRAK+ V S DSS Sbjct: 190 DVRRENKGPQIFLSRAHPQFLAKLFQQEVPEIYEGTISIKSVARDPGSRAKICVQSKDSS 249 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQ +V EL+ EKIDI+ W+ D + V++AL PA V KVVLD++ R Sbjct: 250 IDPVGACVGMRGSRVQTIVNELQGEKIDIINWTEDVGSLVVSALAPAEVMKVVLDQENRR 309 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 EV++ + LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F E + ++A+ Sbjct: 310 AEVVIDENNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQSEFKENSSKLIKALE 369 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +D +A LLV+EGF ++++ + E I+GFDEETA E+Q RA+E+LE + + K Sbjct: 370 IDTTMAQLLVSEGFNTIKDINNANVDEFLKIDGFDEETAKELQDRAKEFLEEEEKEIASK 429 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 ++ELG+ E+L + G+ + + LGE IKT++D A S D+++G + G EKFDG Sbjct: 430 VQELGIEEDLANHKGLTLGMLLTLGEENIKTLKDFAELSTDEIVGGYDEIKGKREKFDGV 489 Query: 488 LSSLGTPKDQVESMIIHARYKM 509 L P+ E +I+ AR K+ Sbjct: 490 LEEFNIPRKDAEDLIMRARKKV 511 >gi|294011603|ref|YP_003545063.1| N utilization substance protein A [Sphingobium japonicum UT26S] gi|292674933|dbj|BAI96451.1| N utilization substance protein A [Sphingobium japonicum UT26S] Length = 523 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 283/523 (54%), Positives = 386/523 (73%), Gaps = 13/523 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEVVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------- 474 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484 Query: 475 -ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ENK E G L+ G ++Q +I+ AR W E E+ Sbjct: 485 RENKE---EDKGGILAEYGLTEEQGNEIIMAARAH--WFEGEE 522 >gi|307293340|ref|ZP_07573186.1| transcription termination factor NusA [Sphingobium chlorophenolicum L-1] gi|306881406|gb|EFN12622.1| transcription termination factor NusA [Sphingobium chlorophenolicum L-1] Length = 523 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 283/523 (54%), Positives = 386/523 (73%), Gaps = 13/523 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEAVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------- 474 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484 Query: 475 -ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ENK E G L+ G ++Q +I+ AR W E E+ Sbjct: 485 RENKE---EDKGGILAEYGLSEEQGNEIIMAARAH--WFEGEE 522 >gi|148556720|ref|YP_001264302.1| transcription elongation factor NusA [Sphingomonas wittichii RW1] gi|148501910|gb|ABQ70164.1| NusA antitermination factor [Sphingomonas wittichii RW1] Length = 529 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 289/526 (54%), Positives = 384/526 (73%), Gaps = 14/526 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IADAVA EK IDR++V+ M D+IQ+AAR+ YG +DIR +I+ +TGD+ Sbjct: 5 ISANRAELLAIADAVAREKLIDREIVIEAMEDAIQRAARARYGAENDIRAKIDGKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE+V++Y Q+S+ A+ IG + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVEQVDDYFKQVSVADAQKLQKDAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ EII+G VKRVE+G+V+VDLG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQYEEFKDRANEIITGVVKRVEFGHVVVDLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I VRRE RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRSLILSVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+ Sbjct: 245 ISHDGSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F + ++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDILTEADASEKRQKEFLQNSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V++ E+ASIEGFDEE E+Q RA+E LE + Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELASIEGFDEELGAELQSRAQEALERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE------ 475 +++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 AAAREERRSLGVEDALAELPYLTEAMLVTLGKAGIKTLDDLADLATDELIQKKRPEQRRR 484 Query: 476 ------NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +G E G L+ G ++Q +I+ AR W E Sbjct: 485 QNSDRPERGDREENKGGVLAEYGLSEEQGNEIIMAARAH--WFTDE 528 >gi|94497164|ref|ZP_01303736.1| NusA antitermination factor [Sphingomonas sp. SKA58] gi|94423269|gb|EAT08298.1| NusA antitermination factor [Sphingomonas sp. SKA58] Length = 522 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 277/519 (53%), Positives = 380/519 (73%), Gaps = 7/519 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ EL+ IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P++GD+ Sbjct: 5 ISANKAELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK + IG + DPLP +D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVETVEDYFKQVDLKQGQKLKKDAVIGDFIVDPLPAIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY E+KD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQYEEYKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S + +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++ + A +RDPGSRAK+ V Sbjct: 185 IRSVVLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVTVEELAGIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG-----WSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 AAAREERQALGVDDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELIAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 K E G LS+ G ++Q +I+ AR W E+E Sbjct: 485 KSETTEDKGGILSAYGLNEEQGNEIIMAARAH--WFEEE 521 >gi|157825875|ref|YP_001493595.1| transcription elongation factor NusA [Rickettsia akari str. Hartford] gi|157799833|gb|ABV75087.1| transcription elongation factor NusA [Rickettsia akari str. Hartford] Length = 503 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 240/479 (50%), Positives = 351/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILVSTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+V++Y QISL A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVQDYLTQISLAEALRKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I+ EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLINGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGSRAK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKIEVPEILEDIIQIKSVARDPGSRAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFVT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 TQ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STQLFMEALDVEEVIGQLLSVTGFNSVEQIASSEVSTLTRIEGFEEELAVEIKNRAVNYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILALPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|157964683|ref|YP_001499507.1| transcription elongation factor NusA [Rickettsia massiliae MTU5] gi|157844459|gb|ABV84960.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia massiliae MTU5] Length = 503 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/479 (50%), Positives = 351/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEAIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|15892740|ref|NP_360454.1| transcription elongation factor NusA [Rickettsia conorii str. Malish 7] gi|20139038|sp|Q92HF4|NUSA_RICCN RecName: Full=Transcription elongation protein nusA gi|15619917|gb|AAL03355.1| N utilization substance protein A [Rickettsia conorii str. Malish 7] Length = 503 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/479 (50%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG DI+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYDIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF++DSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFAADSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|157828686|ref|YP_001494928.1| transcription elongation factor NusA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933405|ref|YP_001650194.1| transcription elongation factor NusA [Rickettsia rickettsii str. Iowa] gi|157801167|gb|ABV76420.1| transcription elongation factor NusA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908492|gb|ABY72788.1| N utilization substance protein A [Rickettsia rickettsii str. Iowa] Length = 503 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/479 (50%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNVGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|238650318|ref|YP_002916170.1| transcription elongation factor NusA [Rickettsia peacockii str. Rustic] gi|238624416|gb|ACR47122.1| transcription elongation factor NusA [Rickettsia peacockii str. Rustic] Length = 503 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/479 (50%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQTAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|229586874|ref|YP_002845375.1| transcription elongation factor NusA [Rickettsia africae ESF-5] gi|228021924|gb|ACP53632.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia africae ESF-5] Length = 503 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/479 (50%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|34581537|ref|ZP_00143017.1| N utilization substance protein A [Rickettsia sibirica 246] gi|28262922|gb|EAA26426.1| N utilization substance protein A [Rickettsia sibirica 246] Length = 503 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/479 (50%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q ++KLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLIKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|51473734|ref|YP_067491.1| transcription elongation factor NusA [Rickettsia typhi str. Wilmington] gi|51460046|gb|AAU04009.1| transcription elongation protein NusA (N utilization substance protein A) [Rickettsia typhi str. Wilmington] Length = 503 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/479 (49%), Positives = 355/479 (74%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++++++ + +IQ A R YG +I+ +IN +TG+I Sbjct: 1 MSNIYNVEILQIIDSVAREKGISKEILIATVEQAIQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D+ RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDYARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ G+II+G VKR+EYG++IVDLG ++ +I++D+ I E+ +P D Sbjct: 121 RVIEAEREKQYNDFKDRKGDIINGIVKRIEYGDIIVDLGRAEAIIKKDQLIKGEHFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR + +VKLF +EVPEI I+QVK+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNKMLVKLFKLEVPEILEDIIQVKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLVPLAPSEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+ Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIRYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEQIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|15604408|ref|NP_220925.1| transcription elongation factor NusA [Rickettsia prowazekii str. Madrid E] gi|20139314|sp|Q9ZCZ7|NUSA_RICPR RecName: Full=Transcription elongation protein nusA gi|3861102|emb|CAA15002.1| N UTILIZATION SUBSTANCE PROTEIN A (nusA) [Rickettsia prowazekii] gi|292572170|gb|ADE30085.1| N utilization substanceprotein A,transcription termination factor NusA [Rickettsia prowazekii Rp22] Length = 503 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 238/479 (49%), Positives = 353/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIYNIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ G+II+G VKR+EYG++IVDL ++ +I++D+ I E+ +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGDIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGEHFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+ Sbjct: 301 KILIDEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|239946885|ref|ZP_04698638.1| transcription elongation factor NusA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921161|gb|EER21185.1| transcription elongation factor NusA [Rickettsia endosymbiont of Ixodes scapularis] Length = 503 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 239/479 (49%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVENVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+++RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSIARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|67459264|ref|YP_246888.1| transcription elongation factor NusA [Rickettsia felis URRWXCal2] gi|67004797|gb|AAY61723.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia felis URRWXCal2] Length = 503 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 238/479 (49%), Positives = 350/479 (73%), Gaps = 3/479 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKVYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI---VT 297 VF+SDSSIDPVG+CVG+RG+RV+A+ EL EKIDIV+WS D A F++NAL P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAITNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIATSEVSALTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 479 >gi|294085149|ref|YP_003551909.1| NusA antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292664724|gb|ADE39825.1| NusA antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 531 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 250/450 (55%), Positives = 337/450 (74%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL+Q+AD VA EKSIDR+ V+ M ++IQKA R+ YG DIR I+ ++G I L R + Sbjct: 9 MELIQVADVVAREKSIDREEVMLAMEEAIQKAGRAKYGLERDIRAMIDRKSGAIRLERWM 68 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVEEVE+ QIS+ P++ +G LPP++FGR+A Q+AKQVI QKVR+AE Sbjct: 69 EVVEEVEDDETQISVDEGAKLTPAVGLGEFSKQSLPPIEFGRIAAQTAKQVISQKVRDAE 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R RQ+ E+KD+VGEI+ GT+KR E ++ VDLG ++ VIRR+E I RENLR GDRV++YI Sbjct: 129 RARQFEEYKDRVGEIVVGTIKRAESYSITVDLGRAEAVIRREEMIPRENLRQGDRVRAYI 188 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR EQRGPQ+ LSR +FM KLF EVPEIY+GI+++K V+R+ GSRAK++V S+D Sbjct: 189 IDVREEQRGPQIFLSRACNEFMAKLFTQEVPEIYDGIIEIKGVAREAGSRAKISVLSNDP 248 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRGSRVQAVV EL+ EK++I+ ++ D A FV+NAL PA V KVV+DE G Sbjct: 249 GIDPVGACVGMRGSRVQAVVGELQGEKVEIIPFNDDPAAFVVNALAPAEVAKVVMDEVAG 308 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 R+EV+VP +QLSLAIGRRGQNVRLASQL+GW IDI+TE E+S RQ++F R+ F++A+ Sbjct: 309 RMEVVVPDDQLSLAIGRRGQNVRLASQLSGWYIDILTEAEESERRQEEFRTRSTGFIEAL 368 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 N+D++IAHLLVAEGF EE+A I E+A+I+GFDE+ A E+Q RA +Y+E + + Sbjct: 369 NIDDVIAHLLVAEGFVLPEEIAESTIEELANIQGFDEDIATELQNRAVDYVERETTRINE 428 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGI 456 + +L V+++L + I + ++L EN I Sbjct: 429 ALDKLKVADDLRAFEYISLAMLLSLAENNI 458 >gi|91205427|ref|YP_537782.1| transcription elongation factor NusA [Rickettsia bellii RML369-C] gi|91068971|gb|ABE04693.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia bellii RML369-C] Length = 500 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/476 (48%), Positives = 343/476 (72%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAVRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++ Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+ Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+ Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + K++ ELGV +EL I I ++ + E GIKT+EDL SV++ + N Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNEFKNLASN 476 >gi|157827030|ref|YP_001496094.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389] gi|157802334|gb|ABV79057.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389] Length = 500 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/476 (48%), Positives = 343/476 (72%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++ Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+ Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+ Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + K++ ELGV +EL I I ++ + E GIKT+EDL SV++ + N Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNEFKNLAPN 476 >gi|157803622|ref|YP_001492171.1| transcription elongation factor NusA [Rickettsia canadensis str. McKiel] gi|157784885|gb|ABV73386.1| transcription elongation factor NusA [Rickettsia canadensis str. McKiel] Length = 503 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/473 (49%), Positives = 344/473 (72%), Gaps = 3/473 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI ++VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIINSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE VE+Y QIS + A ++P+ IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVENVEDYLTQISFEEALIKNPAAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER +QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAERAKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +V LF +EVPEI+ I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVNLFKLEVPEIFEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N L A +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAAAAIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STGLFMEALDVEEVIGQLLSVTGFNSVEQIANSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + KK+ ELGV +E+ I + ++ + E GIKT+EDL SV++ Sbjct: 421 NLKNEKIIKKLEELGVEQEVIDILELPLELILKFAEYGIKTIEDLGEMSVNEF 473 >gi|254456337|ref|ZP_05069766.1| transcription termination factor [Candidatus Pelagibacter sp. HTCC7211] gi|207083339|gb|EDZ60765.1| transcription termination factor [Candidatus Pelagibacter sp. HTCC7211] Length = 517 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 243/506 (48%), Positives = 352/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A++LELL+IA+AVA EKSID+++++S M I KAA+S +G ++I+V I+ ++GDI +F Sbjct: 6 ADKLELLRIAEAVALEKSIDKELIISSMETGIAKAAKSKFGQDNEIKVSIDRDSGDIEIF 65 Query: 64 RLLEVVEEVENYTCQISLK---VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L V E EN +I L+ + + + +G V PLP DFGR+A Q+AKQVI Sbjct: 66 RKLIVAENPENSNTEIKLEDAIILNEINKDKAVGDEVLQPLPSFDFGRIAAQTAKQVISF 125 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVI DLG ++ +I+++E I REN++ GD Sbjct: 126 NVREAERERQYNDFIDKKDTILSGIVKRLEFGNVIADLGRTEAIIQKNEMIPRENIKAGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y YDVRRE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ SRDPGSRAK+ Sbjct: 186 RIKAYCYDVRREPRGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSSRDPGSRAKIC 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAILVSNALSPAEVQRVN 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D + +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 306 VDIERKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQVEFKEKTE 365 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ ++++ + IEG +E+TA+ + RA+E+ + Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSIDDIKDTTAENLMKIEGIEEDTAIALIERAKEFHQKD 425 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I+ELG+ + L ++ G+ + V LGE I T+ED A + D+L G + G Sbjct: 426 QEDISERIKELGLQDSLINLKGLTPGMLVTLGEQKILTLEDFADLASDELTGGYDVVKGE 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K++ + +I+ AR Sbjct: 486 RVKIQGYLEDFALSKEEADELIMSAR 511 >gi|117927003|ref|YP_867620.1| NusA antitermination factor [Magnetococcus sp. MC-1] gi|117610759|gb|ABK46214.1| NusA antitermination factor [Magnetococcus sp. MC-1] Length = 506 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 250/516 (48%), Positives = 357/516 (69%), Gaps = 21/516 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E+LQ+AD VA EK IDR VV+ M +IQ A+R YG +I+ +P++G+ L +L Sbjct: 3 VEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQLR 62 Query: 67 EVV-----EEVE-NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 EVV E+++ + ISL+ A +P G +++ LPPM+FGR+A Q+AKQVI+Q Sbjct: 63 EVVDLDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER+R + E+ D+ GE+++G VKRVE N+ VDLG + G + +E + RE+ RPGD Sbjct: 123 KVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGRTSGFLPHEEQLPREHYRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++++I +VR RGPQ++LSRTHPQ +V+LF MEVPEIY+GIV++KAV+RDPG R+K+A Sbjct: 183 RIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHRSKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D+ +DPVGACVGMRGSRVQ+VVTEL+ E+IDI+ WS D A FV NAL PA V KVV Sbjct: 243 VRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ I+V+V + LSLAIGRRGQNVRLAS+LTGW IDIITE+E+ R++ F E Q Sbjct: 303 VDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFGELQQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ +++ E +A +LV EGF EE+A V ++E+ SIEGFDEE A E++ RAR+ L Sbjct: 363 TFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDTLLQQ 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +++ EL + E L + + +AL E + T++DLA + D+L Sbjct: 423 ALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDEL---------- 472 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +E FDG L++ + E++I+ AR GW + E+ Sbjct: 473 VEMFDGELTT-----EDAETLILGARRAAGWFDDEE 503 >gi|71083093|ref|YP_265812.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1062] gi|71062206|gb|AAZ21209.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1062] Length = 517 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 241/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F Sbjct: 6 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 65 Query: 64 RLLEVVEEVENYTCQISLK---VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L VVE+ EN +I+L+ + + + IG + PLP DFGR+A Q+AKQVI Sbjct: 66 RKLIVVEKPENTNTEINLQDAIILNEANKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 125 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD Sbjct: 126 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+ Sbjct: 186 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 306 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 365 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ + Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 425 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G Sbjct: 426 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K + + +I+ AR Sbjct: 486 RIKIQGYLEDFALSKTEADELIMSAR 511 >gi|91762480|ref|ZP_01264445.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1002] gi|91718282|gb|EAS84932.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1002] Length = 530 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 241/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F Sbjct: 19 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 78 Query: 64 RLLEVVEEVENYTCQISLK---VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L VVE+ EN +I+L+ + + + IG + PLP DFGR+A Q+AKQVI Sbjct: 79 RKLIVVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 138 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD Sbjct: 139 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 198 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+ Sbjct: 199 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 258 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 259 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 318 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 319 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 378 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ + Sbjct: 379 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 438 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G Sbjct: 439 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K + + +I+ AR Sbjct: 499 RIKIQGYLEDFALSKTEADELIMSAR 524 >gi|255019834|ref|ZP_05291910.1| Transcription termination protein NusA [Acidithiobacillus caldus ATCC 51756] gi|254970763|gb|EET28249.1| Transcription termination protein NusA [Acidithiobacillus caldus ATCC 51756] Length = 493 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/466 (48%), Positives = 326/466 (69%), Gaps = 3/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +ADAVA+EK +DR+V+ + S+ A++ YG DI V ++ +TGD + R Sbjct: 4 ELLYLADAVAHEKEVDREVIFQALEASLVSASKKKYGPNWDIVVTVDRKTGDYTTRRRWT 63 Query: 68 VV-EEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV ++ E++ QI L AR RD I +G V+ + LP ++FGR+A Q+AKQVI+Q+VR+ Sbjct: 64 VVADDAEDFEAEAQIRLSDARARDQGIAVGDVIEEELPDVEFGRIAAQTAKQVIVQRVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDR +F + GEIISG VKR+E GN I+D+G ++ ++ ++E I RE +RPGDR+K Sbjct: 124 AERDRIVADFAMRQGEIISGVVKRMEKGNAIIDMGRAEAILPKEEMIPREAIRPGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ +VRR RGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+ Sbjct: 184 HLKEVRRVPRGPQLFLSRTSPELLMKLFAQEVPEIANGMIEIMGAARDPGLRAKLAVRSN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVGMRG+RVQ V+ EL+ E++DIVVWSP+ A+FVINAL PA V+ +++DE+ Sbjct: 244 EPRVDPVGACVGMRGNRVQTVINELKGERVDIVVWSPEPASFVINALSPAEVSSIIVDEN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V EQLSLAIGR GQNVRLASQLTGWTI+I+TE+E R+++ Q FM Sbjct: 304 THSMDVVVDPEQLSLAIGRGGQNVRLASQLTGWTINILTEDEARAKREEEDARFRQQFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE +A LLV EGF +EE+A V ++E+ IEG DEE E++ RAR+ L I Sbjct: 364 DLGIDEDLATLLVNEGFTSIEEVAYVPVAEMLEIEGLDEELVTELRRRARDVLLNKAIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++++ +E+L ++ G+D + L GI T E LA +VD+L Sbjct: 424 EEQVVLSEPAEDLLALEGMDKGLAHLLASKGITTAESLAELAVDEL 469 >gi|189183523|ref|YP_001937308.1| transcription elongation factor NusA [Orientia tsutsugamushi str. Ikeda] gi|189180294|dbj|BAG40074.1| N utilization substance protein A [Orientia tsutsugamushi str. Ikeda] Length = 500 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/485 (44%), Positives = 321/485 (66%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+ E+L++ + +A +K I +D ++S++ + IQ ++ +YG +I+VEIN ++G+ Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKIYGAEHNIKVEINKKSGEC 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q Sbjct: 61 KLYRVLDVVEETEDMYSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARHFIAQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A Sbjct: 181 RVKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTIIIKAVARDPGSRAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS DSSID VG+C+GMRG+R++ + EL E+I+++ WS D A F INA+ P +TKV+ Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISHELAGERINVIKWSQDIAGFAINAMSPVQITKVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE+IV QLS+AIGRRGQNVRL S+L GW IDIITEE++S R +F T Sbjct: 301 IDESRRLIELIVSANQLSIAIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +DE++A LLVAEGF +E++A ++ + SI+ + E +E+Q +A +Y+ Sbjct: 361 LFTKNLGIDEMLAQLLVAEGFISIEQIAHADLNALTSIDKLNSELVLELQQKAIDYVNNQ 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K+ ELGV +EL I + + L ENGIK +EDL + + +N + Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSEFNTLVQNNCLS 480 Query: 481 IEKFD 485 E+F+ Sbjct: 481 EEEFN 485 >gi|198282694|ref|YP_002219015.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667138|ref|YP_002424886.1| transcription termination factor NusA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247215|gb|ACH82808.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519351|gb|ACK79937.1| transcription termination factor NusA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 493 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/466 (47%), Positives = 320/466 (68%), Gaps = 3/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +ADAVA+EK +DR+V+ + S+ A++ YG I V+++ +TGD RL E Sbjct: 4 ELLYLADAVAHEKDVDREVIFLALEASLVSASKKKYGQDWHIAVDVDRKTGDYVTRRLWE 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + QI L AR P + G + + LPP++FGR+A Q+AKQVI+QKVR+ Sbjct: 64 VVADDVADYDVDQQIRLSDARKTRPEAEPGDYLEEVLPPVEFGRIAAQTAKQVIVQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDR +F + G+I+SG VKR+E GN IVD+G ++ ++ ++E + RE +RPGDRV++ Sbjct: 124 AERDRIVSDFAIRKGDIVSGLVKRMEKGNAIVDMGRAEAILPKEEMMPREAIRPGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ DVRR QRGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+ Sbjct: 184 HLQDVRRVQRGPQLFLSRTSPELLIKLFAQEVPEIGNGMIEIMGAARDPGLRAKLAVRSN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DPVGACVG+RG+RVQ V+ EL+ E+IDIV+W+ D A++VINAL PA V+ +V+DE+ Sbjct: 244 DPRVDPVGACVGLRGNRVQTVINELKGERIDIVIWAADPASYVINALSPAEVSSIVVDEN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E LS AIGR GQNVRLA+QLTGWTI+I+TEEE R+++ + F+Q Sbjct: 304 THSMDVVVGPEHLSQAIGRGGQNVRLATQLTGWTINILTEEEAQAKREEEESTFLNHFIQ 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A LLV+EGF +EE+A V ++E+ I+G DE E++ RAR+ L I Sbjct: 364 DLGVDEDLAALLVSEGFTSIEEVAYVPVAEMMEIDGLDENLVGELRRRARDVLLNKAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++++ +E+L S+ G+D + L G+ T EDLA + +L Sbjct: 424 EEQVALSEPAEDLLSLKGMDKGLAHLLASKGVVTSEDLAELAASEL 469 >gi|218509055|ref|ZP_03506933.1| transcription elongation factor NusA [Rhizobium etli Brasil 5] Length = 266 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/264 (76%), Positives = 238/264 (90%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAV 265 S+DSSIDPVGACVGMRGSRVQAV Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAV 266 >gi|121998529|ref|YP_001003316.1| transcription elongation factor NusA [Halorhodospira halophila SL1] gi|121589934|gb|ABM62514.1| NusA antitermination factor [Halorhodospira halophila SL1] Length = 501 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 219/481 (45%), Positives = 329/481 (68%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A + EK +DR+V+ + ++ A R + D RV ++ ++GD + +R E Sbjct: 4 EILLVVEATSNEKGVDREVIFEAIEAALASATRKRHLEDIDARVAVDRQSGDYATYRRWE 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV E VE QISL+ AR+RD + ++GG V +P+ +DFGR+A Q+AKQVI+QKVRE Sbjct: 64 VVPDEESVEEPQRQISLERARERDENAEVGGYVEEPIESVDFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++ ++GE+++G+VKR+E G+ I+DLG N++ ++ R++ I RE +RP DR++ Sbjct: 124 AERAQIVDAYQHRIGELVNGSVKRMERGSAIIDLGENTEALVSREDLIPREAVRPNDRIR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DVR E RGPQ+ +SRT +F+V+LF +EVPE+ G++++ +RDPG RAK++V + Sbjct: 184 GYLRDVRSEPRGPQLFVSRTANEFLVELFKIEVPEVGQGLIEILGAARDPGMRAKISVRA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVGMRGSRVQAV EL E+IDI+ W + A FVINAL PA V +V+DE Sbjct: 244 LDPRIDPVGACVGMRGSRVQAVSNELSGERIDIIPWDENPAQFVINALAPAEVESIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D G ++V V +EQLS AIGR GQNVRLAS+LTGW ++++T EE +++ E Q F+ Sbjct: 304 DRGAMDVAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKSEREAGELVQLFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF+ +EE+A V +E+ IE FDE+ ++ RAR+ L + Sbjct: 364 EHLDVDEDVAGVLVQEGFSSIEEVAYVPTAELLEIEEFDEDIVEALRSRARDVL--LAQA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 + ++ E SEEL ++ G+D + AL E G+ T+EDLA SVDDL+ G E++ G Sbjct: 422 IAEEANENQPSEELLALEGMDEQTAKALAERGVATVEDLADQSVDDLMEVEGMDEDRAGQ 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|88657698|ref|YP_507374.1| transcription elongation factor NusA [Ehrlichia chaffeensis str. Arkansas] gi|88599155|gb|ABD44624.1| N utilization substance protein A [Ehrlichia chaffeensis str. Arkansas] Length = 517 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/526 (40%), Positives = 344/526 (65%), Gaps = 34/526 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG ++ +R Sbjct: 8 DNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYGNCK-IKVTVDKKTGVVATYR 66 Query: 65 LLEVVE------------------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF 106 + V+ +V Y I+L A+ D ++++G ++ +PLP +D Sbjct: 67 QVLVINNNGDISVPEGKENEIDFSDVSKYKL-ITLAEAKQIDKNVEVGDIMLEPLPVIDL 125 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + AKQ I Q + ER +QY +FKD+VG+I+ GT KR+EY NVIVDL ++G + Sbjct: 126 DYSSAKIAKQKIAQVIISEERKKQYEDFKDRVGDIVYGTAKRIEYNNVIVDLNGNEGYLS 185 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV + Sbjct: 186 ASNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTI 245 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 KA++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F Sbjct: 246 KAIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKF 305 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ++NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E Sbjct: 306 IVNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDET 365 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +S + K+ + ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A Sbjct: 366 ESSRKAKELSAGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIA 425 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E++ RA +YL D +++ + L V +++ +P + +AL +NGI ++ED+AG Sbjct: 426 EELKSRAADYLVRKDAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLC 485 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ FD + + KDQV+S+I+ +R K+GW+ Sbjct: 486 TDEF-------------FD-IIPDIALTKDQVDSVILESRKKIGWL 517 >gi|148284846|ref|YP_001248936.1| transcription elongation factor NusA [Orientia tsutsugamushi str. Boryong] gi|146740285|emb|CAM80660.1| N utilization substance protein A, transcription termination factor [Orientia tsutsugamushi str. Boryong] Length = 500 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 210/485 (43%), Positives = 318/485 (65%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+ E+L++ + +A +K I +D ++S++ + IQ ++ YG +I+VEIN ++G+ Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKKYGAEHNIKVEINKKSGEC 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q Sbjct: 61 KLYRVLDVVEETEDMCSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARYFIAQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A Sbjct: 181 RIKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTISIKAVARDPGSRAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS DSSID VG+C+GMRG+R++ + EL E+I+++ W+ D A F INA+ P +TKV+ Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISNELSGERINVIKWNQDIAGFAINAMSPVQITKVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE+IV QLS++IGRRGQNVRL S+L GW IDIITEE++S R +F T Sbjct: 301 IDESRHLIELIVSANQLSISIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +DE++A LLVAEG +E++A ++ + SI+ + E +E+Q +A +Y+ Sbjct: 361 LFTKNLGIDEMLAQLLVAEGLISIEQIAHADLNVLTSIDRLNSELVLELQQKAIDYVNNQ 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K+ ELGV +EL I + + L ENGIK +EDL + + N + Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSEFNTLVPNNCLS 480 Query: 481 IEKFD 485 E+F+ Sbjct: 481 EEEFN 485 >gi|114321098|ref|YP_742781.1| transcription elongation factor NusA [Alkalilimnicola ehrlichii MLHE-1] gi|114227492|gb|ABI57291.1| NusA antitermination factor [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/481 (45%), Positives = 325/481 (67%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A + EK +DR+V+ + ++ A R + D RVE+N TGD S FR Sbjct: 4 EILLVVEATSNEKGVDREVIFEAIEAALASATRKRHPEDIDARVEVNRNTGDYSTFRRWW 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE +VE+ QI+L+ AR R P I++G + +P+ ++FGR+A Q+AKQVI+QKVRE Sbjct: 64 VVESDEDVESPARQITLEEARQRQPDIEVGECLEEPMESVEFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + F+D++GE+++GTVKR+E G+VI+DLG N++ +I R+ I RE +R DR++ Sbjct: 124 AERAKVVEAFQDRIGELVTGTVKRLERGSVIMDLGGNAEALIPREAMIPREAVRREDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DVR E RGPQ+ +SRT P+F+V+LF +EVPE+ ++++ +RDPG RAK+AV + Sbjct: 184 GYLKDVRPEPRGPQLFVSRTAPEFLVELFKLEVPEVGQELIEIMGAARDPGVRAKIAVRA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVGMRGSRVQAV EL E+IDI++W + A FVINAL PA V +V+DE Sbjct: 244 LDPRIDPVGACVGMRGSRVQAVSNELAGERIDIILWDDNPAQFVINALAPAEVESIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V +EQLS AIGR GQNVRLAS+LTGW ++++T EE Q++ + Q F Sbjct: 304 DRHSMDIAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKNQEEAAQYQQLFQ 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE IA +LV EGF+ +EE+A V +E+ +E FDE+ E++ RAR+ L + Sbjct: 364 EKLDVDEEIAAILVQEGFSSLEEVAYVPAAELLEVEEFDEDIVDELRARARDVL--VSEA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 +++ +E+L ++ G+D + AL G+ TMEDLA SVD+L+ G E + G Sbjct: 422 EERESAGTEPAEDLLTMEGMDEDLARALAARGVCTMEDLAEQSVDELMEIEGMDETRAGQ 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|57239198|ref|YP_180334.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Welgevonden] gi|58579156|ref|YP_197368.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Welgevonden] gi|58617209|ref|YP_196408.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Gardel] gi|57161277|emb|CAH58198.1| putative N utilization substance protein A [Ehrlichia ruminantium str. Welgevonden] gi|58416821|emb|CAI27934.1| Transcription elongation protein nusA [Ehrlichia ruminantium str. Gardel] gi|58417782|emb|CAI26986.1| Transcription elongation protein nusA [Ehrlichia ruminantium str. Welgevonden] Length = 517 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/526 (40%), Positives = 338/526 (64%), Gaps = 34/526 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG IS +R Sbjct: 8 DNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYGNCK-IKVTVDKKTGLISTYR 66 Query: 65 LLEVVEE------------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF 106 + V+ + V Y I+L A+ D + +G ++ +PLP +D Sbjct: 67 QVLVISDNGEVVIPEGKENEIDHADVNKYKL-ITLTEAKQIDENAKLGDIMLEPLPVIDL 125 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + AKQ I Q + ER +QY FKD++G+I+ GT KR+EY NVIVDL ++G + Sbjct: 126 DYSSAKIAKQKIAQVIVSEERKKQYESFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYLS 185 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV + Sbjct: 186 ASNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRVNKGFMEQLFKQEIPEIYDGIVTI 245 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 KA++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID+V++SP+ F Sbjct: 246 KAIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIAELHGEKIDVVLYSPELPKF 305 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ++NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L W ID+I +E Sbjct: 306 IVNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVNWKIDVIGDET 365 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +S + K+ ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A Sbjct: 366 ESTRKAKELTVGSRIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIA 425 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E++ RA +YL D +++ + L + +++ +P + +AL E+GI +ED+AG Sbjct: 426 IELKNRASDYLTRKDAEIKQILESLPIDKDVAVLPFLKPSDIIALSESGINNLEDIAGLC 485 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + ++ KDQ++S+I+ +R K+GW+ Sbjct: 486 TDE--------------FYEIVPNVALTKDQIDSIILESRRKIGWL 517 >gi|73667087|ref|YP_303103.1| transcription elongation factor NusA [Ehrlichia canis str. Jake] gi|72394228|gb|AAZ68505.1| Transcription termination factor NusA C-terminal duplication [Ehrlichia canis str. Jake] Length = 517 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/525 (41%), Positives = 346/525 (65%), Gaps = 32/525 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A +A +K ++ D+++ + ++IQ +RS YG I+V ++ +TG +S +R Sbjct: 8 DNLELIRVAKDIADQKGLNLDIIIRAIEEAIQLTSRSKYGNCK-IKVTVDRKTGVVSTYR 66 Query: 65 LLEVVEE------VENYTCQI-----------SLKVARDRDPSIDIGGVVSDPLPPMDFG 107 + V+ + EN +I +L A+ D + ++G ++ + LP +D Sbjct: 67 QVLVINDNGEIVIPENKKSEIDSSDISKYKLITLTEAKQIDENAEVGDIMLEHLPVIDLD 126 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 + + AKQ I Q + ER +QY +FKD++G+I+ GT KR+EY NVIVDL ++G + Sbjct: 127 YSSAKIAKQKIAQVIISEERKKQYEDFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 I E R GDRVK++I DVR+E GPQ+ LSR FM +LF E+PEIY+GIV +K Sbjct: 187 ANLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRISKGFMEQLFKQEIPEIYDGIVTIK 246 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID++++SP+ A F+ Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIYELHGEKIDVILYSPELAKFI 306 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW ID+I +E + Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELIGWKIDVIGDETE 366 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 S + K+ +E ++ F++ ++V+EII LL EGF +E++ +S+IA+I+GF+EE A Sbjct: 367 SSRKAKELSEGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDIAAIDGFNEEIAE 426 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 E++ RA +YL D +++ + L V +++ ++P + +AL ENGIK++ED+AG Sbjct: 427 ELKSRAADYLTRKDAEIKQILDNLSVDKDVTTLPFLKPSDIIALSENGIKSLEDIAGLCT 486 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ FD + ++ KDQ++S+I+ +R K+GW+ Sbjct: 487 DEF-------------FD-IVPNIALTKDQIDSVILESRKKIGWL 517 >gi|255611947|ref|XP_002539363.1| Transcription elongation protein nusA, putative [Ricinus communis] gi|223506838|gb|EEF23020.1| Transcription elongation protein nusA, putative [Ricinus communis] Length = 316 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/313 (64%), Positives = 250/313 (79%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 MVKLF MEVP IY+GI+QV++V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV Sbjct: 1 MVKLFTMEVPGIYDGIIQVRSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120 Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 VRLASQLTGW IDI+TE E+S RQK+FNERT FM A++VDE++ +L +EGFA VEEL Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDALDVDEMVGQVLASEGFAAVEEL 180 Query: 388 ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447 A V + EIASI+GFDE+TA EIQ RAREYLE ++ + +K + LGV++EL I GI +++ Sbjct: 181 AYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLEAEMDEKRKALGVTDELRQINGITAQM 240 Query: 448 KVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 VALGE+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E M++ AR Sbjct: 241 MVALGEDGIKTVEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMVVQARL 300 Query: 508 KMGWIEKEKVADE 520 GWI +E +A E Sbjct: 301 LAGWITEEDLAKE 313 >gi|224825864|ref|ZP_03698968.1| NusA antitermination factor [Lutiella nitroferrum 2002] gi|224602088|gb|EEG08267.1| NusA antitermination factor [Lutiella nitroferrum 2002] Length = 493 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 216/468 (46%), Positives = 323/468 (69%), Gaps = 6/468 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L + DA+A EKS+ +DVV + + ++ A + + DIRVEI+ TG FR Sbjct: 4 EILLLVDALASEKSVSKDVVFTALELALASATKKKFNQDDVDIRVEIDRHTGQYHTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ +E +I L AR+RDPSI++G V+ +P+ ++FGR+ Q+AKQVI+QK+R+ Sbjct: 64 TVVEDDMLEFDDKEIELADARERDPSIEVGAVIEEPMEAVEFGRIGAQAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ EF + ++SGTVKR+E GN I++ G + V+ R++ I +ENLR GDRVK+ Sbjct: 124 AEREQLLSEFLQRREHLVSGTVKRIERGNAIIECGKLEAVLPREQMIPKENLRVGDRVKA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R RGPQ++LSRT +F++KLF +EVPEI G++++K +RDPG RAK+AV ++ Sbjct: 184 YLMRIDRLGRGPQLVLSRTSREFLIKLFELEVPEIEEGLLEIKEAARDPGLRAKIAVKAN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP G C+GMRGSRVQ+V EL E++DIV+W+P+ A FVINAL PA V ++++DED Sbjct: 244 DPRIDPQGTCIGMRGSRVQSVTQELAGERVDIVLWAPEPAQFVINALSPAEVNRIMIDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V ++QL+LAIGR GQNVRLA++LTGW ++I+T E Q++ + FM+ Sbjct: 304 NHAMDVVVEEDQLALAIGRSGQNVRLAAELTGWYLNIMTVTEAEEKHQEEDAALRETFMK 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE A LV EGFA +EE+A V I+E+ IEGF+EE E++ RAR+ L + I Sbjct: 364 HLGVDEATAMTLVQEGFATLEEVAYVPIAEMLEIEGFEEEQVNELRSRARDALLTLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGI-DSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ VS++L I G+ D+ + L ENG+ T ++LA +VDDL+ Sbjct: 424 EEKVE--SVSDDLKGIEGLEDADLVRKLAENGVTTRDELADLAVDDLV 469 >gi|119898399|ref|YP_933612.1| transcription elongation factor NusA [Azoarcus sp. BH72] gi|119670812|emb|CAL94725.1| putative N utilization substance protein A [Azoarcus sp. BH72] Length = 491 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/484 (43%), Positives = 331/484 (68%), Gaps = 7/484 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRIHDEADVRVSIDRETGDYESFRRWI 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ D I +G + +PL P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VMPDEEVTNDEAEMGIIDARELDSKIQLGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++ Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRLEAVLPRDQQIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLKIDRGARGPQLILSRTAPEFLMKLFELEVPEIEDGLLEIKACARDPGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VW+ D A FVI AL+PA V +V+DE+ Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIGGEQIDIIVWAADPAQFVIAALQPAEVVSIVVDEEA 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + +++ + FM+ Sbjct: 304 HAMDVVVDESNLAIAIGRNGQNVKLASELTGWTINLMSEQESAEKSEQEKSGIRSLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF+ +EE+A V ++E+ IE FDEET E++ RAR L I + Sbjct: 364 LDVDEEVADILIDEGFSSLEEIAYVPLAEMLEIEAFDEETVTELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ VS++L + G+D + L GI+T +DLA +VD+L+ E G ++E+ Sbjct: 424 EQLE--NVSDDLLGLDGMDKSLAAKLAGKGIRTRDDLADLAVDELV---EMAGLDVEQAK 478 Query: 486 GFLS 489 +S Sbjct: 479 ALIS 482 >gi|192361293|ref|YP_001980958.1| transcription elongation factor NusA [Cellvibrio japonicus Ueda107] gi|190687458|gb|ACE85136.1| N utilization substance protein A [Cellvibrio japonicus Ueda107] Length = 493 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/467 (45%), Positives = 321/467 (68%), Gaps = 3/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAV+ EK +D++++ + ++ A + + S I V IN TGD +R + Sbjct: 4 EILLVADAVSNEKGVDKELIFQAIETALATATKKRFDEDSTIEVIINRTTGDYETWRSWD 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + Q +L+ A ++D S+ G V + + +FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVSDDILAELGTQFTLEEAHEKDTSLKAGDVYREKIENAEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + E++D++GE++SGTVK+V ++IVDLGN ++GV+ RD+ I RE R GDRV++ Sbjct: 124 ERAQMVDEYRDRMGELVSGTVKKVTRDSIIVDLGNNAEGVLPRDQLIGREIFRMGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + DVR E RGPQ+LLSR+ PQ +V+LF +EVPEI ++++K +RDPG RAK+AV ++ Sbjct: 184 LLLDVRTEARGPQLLLSRSAPQMLVELFKIEVPEIAEEVIEIKGAARDPGLRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA + +V+DED Sbjct: 244 DGRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQFVINAMSPAEIESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V +E L++AIGR GQNVRLA +LTGW I++++ + ++ + Q FM Sbjct: 304 ARSMDLAVNEENLAMAIGRGGQNVRLACELTGWNINVMSVADWQAKQEAESGSYIQIFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE IA +LV EGF +EE+A V + E+ +I+GFD++ A E++ RA++ L + Sbjct: 364 ALDVDEDIAGVLVEEGFTTLEEVAYVPLEEMLAIDGFDQDIAEELRARAKDALLTQALAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++++ + +E+L S+ G+DS++ + L GI TMEDLA S+DDLL Sbjct: 424 EERLEGVAPAEDLLSMEGMDSQLAIRLASRGIVTMEDLAEQSIDDLL 470 >gi|313199846|ref|YP_004038504.1| nusa antitermination factor [Methylovorus sp. MP688] gi|312439162|gb|ADQ83268.1| NusA antitermination factor [Methylovorus sp. MP688] Length = 488 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/466 (43%), Positives = 322/466 (69%), Gaps = 6/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V +++EN Q + +R +++G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 IVSDDDLENPAAQ--MYTDDERAEGLNLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+ Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ Sbjct: 422 EKLEE--ASESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELM 465 >gi|253997782|ref|YP_003049845.1| transcription elongation factor NusA [Methylovorus sp. SIP3-4] gi|253984461|gb|ACT49318.1| NusA antitermination factor [Methylovorus sp. SIP3-4] Length = 488 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/466 (44%), Positives = 321/466 (68%), Gaps = 6/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +++EN Q + +R + +G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 VVSDDDLENPAAQ--MYTDDERAEGLSLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+ Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ Sbjct: 422 EKLEE--ASESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELM 465 >gi|74316716|ref|YP_314456.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259] gi|74056211|gb|AAZ96651.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 492 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/465 (44%), Positives = 316/465 (67%), Gaps = 4/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADA+A EK++D++VV + ++ A + + SD+RV I+ ETGD FR Sbjct: 4 EMLMLADALAREKNVDKEVVFEALEQALASATKKRFKEESDVRVAIDRETGDYESFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E +E+ QI L A+D+ P I+IG + +PL ++FGR+ Q+AKQVI+QK+R+A Sbjct: 64 VVTEAELESEGYQILLVDAQDKIPDIEIGDYIEEPLENVEFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G VKR++ GN I++ G +G + RD+ I RENLR GDRV++Y Sbjct: 124 EREQIISDFLARKEHLVNGVVKRIDRGNAIIESGRVEGFLHRDQMIPRENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQV+LSRT P+F++KLF +EVPEI G++++KA +RDPG RAK+AV S D Sbjct: 184 LLRIDRGNRGPQVVLSRTAPEFIMKLFELEVPEIEEGLLEIKAAARDPGLRAKIAVVSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G C+G+RGSRV +V EL E++DI+ WS D A +VINAL PA V+ +V+DED Sbjct: 244 PRIDPIGTCIGLRGSRVTSVTNELAGERVDIIHWSADPAQYVINALAPAEVSSIVVDEDT 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL++AIGR GQNVRLAS+LTGW ++I++ E + + + Q F++ Sbjct: 304 HSMDVVVDEEQLAMAIGRGGQNVRLASELTGWELNIMSREAAEEKQSSESQKTLQLFIEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE E++ RAR L I + Sbjct: 364 LDVDEEVAQILVDEGFSTLEEVAYVPLNEMLEIEAFDEALVNELRNRARNALLTAAIVGE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +++ + +L S+ G+D++ L G+ T EDLA +VD+L Sbjct: 424 EQVE--ASAGDLLSLDGMDAETARLLASKGVHTTEDLAELAVDEL 466 >gi|218670845|ref|ZP_03520516.1| transcription elongation factor NusA [Rhizobium etli GR56] Length = 276 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/274 (72%), Positives = 235/274 (85%) Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 +IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI Sbjct: 1 IIRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGI 60 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 +QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D Sbjct: 61 IQVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDP 120 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+T Sbjct: 121 ATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMT 180 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E E+S RQK+FNERT FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDE Sbjct: 181 EAEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDE 240 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437 ETA EIQ RARE+LE ++ + +K + LGV +EL Sbjct: 241 ETAQEIQQRAREFLERLEAEMDEKRKALGVEDEL 274 >gi|292492785|ref|YP_003528224.1| transcription termination factor NusA [Nitrosococcus halophilus Nc4] gi|291581380|gb|ADE15837.1| transcription termination factor NusA [Nitrosococcus halophilus Nc4] Length = 506 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 218/468 (46%), Positives = 314/468 (67%), Gaps = 4/468 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK + ++V+ + ++ A R Y +RV I+ TGD FR E Sbjct: 4 EILMVVDAVSNEKGVGKEVIFQAIEAALAMATRKRYQEDIAVRVAIDRATGDYQSFRTWE 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE E+E QI L A RDP+I++GG + +P+ + FGR+A Q+AKQVI+QKVRE Sbjct: 64 VVEDEAELEAPQRQICLGEALKRDPNIEVGGFIEEPMESIAFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +KD+VGE++ G VKR + GNVI+DLG N++G+I ++E I RE +RPGDR++ Sbjct: 124 AERAKVVAAYKDRVGEMVMGVVKRTDRGNVILDLGDNAEGIIPQEEMIPREAIRPGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +VR E RGPQ++LSRT P+ +++LF +EVPEI +++K +RDPG RAK+AV + Sbjct: 184 GYLKEVRTEGRGPQLVLSRTAPELLIELFKLEVPEINENRIEIKGAARDPGLRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+DE Sbjct: 244 NEARIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPAHFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V + LS AIGR GQN+RLASQLTGW ++++TEEE + + Q FM Sbjct: 304 ESHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEEEAGEKGEAEAKALQQMFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF+ +EE+A V EI ++E FD + E++ RAR+ L I Sbjct: 364 EQLDVDEEVAAILVHEGFSSIEEVAYVPEQEILAVEEFDSQIVQELRNRARDVLLTRAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ I + +EL + ID ++ L GI T +DLA SVDDL+ Sbjct: 424 NEETIETMQPDQELLDMEEIDYELAGILASKGIVTKDDLAEQSVDDLM 471 >gi|222475232|ref|YP_002563648.1| transcription termination factor nusA (nusA) [Anaplasma marginale str. Florida] gi|255003215|ref|ZP_05278179.1| transcription elongation factor NusA [Anaplasma marginale str. Puerto Rico] gi|255004343|ref|ZP_05279144.1| transcription elongation factor NusA [Anaplasma marginale str. Virginia] gi|222419369|gb|ACM49392.1| transcription termination factor nusA (nusA) [Anaplasma marginale str. Florida] Length = 515 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/529 (41%), Positives = 343/529 (64%), Gaps = 34/529 (6%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG + Sbjct: 4 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVV 62 Query: 61 SLFRLLEVVE---------------EVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPM 104 S+ R VV EV Y ++S VA +D + +G ++ +PLPP+ Sbjct: 63 SISRQALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKD--VKVGDILFEPLPPV 120 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 D + + A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G Sbjct: 121 DVDYNSAKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGY 180 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + TI E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GI Sbjct: 181 LPVYNTIRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGI 240 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D Sbjct: 241 VSIKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDL 300 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FV++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I Sbjct: 301 AKFVVSAIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIG 360 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 +E +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+E Sbjct: 361 DETESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNE 420 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 E AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A Sbjct: 421 EIAVELKKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIA 480 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + K+QV+S+I+ +R +MGWI Sbjct: 481 SMCTDE--------------FYDMVPKARLSKEQVDSIILESRKRMGWI 515 >gi|71908071|ref|YP_285658.1| transcription elongation factor NusA [Dechloromonas aromatica RCB] gi|71847692|gb|AAZ47188.1| NusA antitermination factor [Dechloromonas aromatica RCB] Length = 490 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/465 (43%), Positives = 318/465 (68%), Gaps = 4/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +++V + ++ A + +D+R+ I+ +TG FR + Sbjct: 4 EILLLVDALAREKNVSKEIVFGALELALASATKKRINDEADVRISIDRDTGSFESFRRWQ 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E N +I L A+ DP I+ G + +PL P+DFGR+ Q+AKQVI+QK+R+A Sbjct: 64 VVPDNEYVNEFLEIPLSDAQKDDPEIEPGDSLEEPLEPIDFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++SGT+KR+E GN I++ G + ++ RD+ I +ENLR GDRV++Y Sbjct: 124 EREQILADFLGRGEHVVSGTIKRMERGNAIIEAGKIEAMLPRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF MEVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRNARGPQIILSRTAPEFVIKLFDMEVPEISDGLMELKACARDPGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G CVG+RGSRV AV E+ E IDIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 PRVDPIGTCVGLRGSRVTAVRNEIGGENIDIVLWSADPAQFVIGALSPAEVSSIVVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L++AIGR GQNVRLAS+LTGWTI+++T++E + + +F E FM+ Sbjct: 304 HAMDVVVDEDNLAIAIGRNGQNVRLASELTGWTINLMTQDESAKKSEAEFAETRVVFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +++DE +A LL+ EGF+ +EE+A V ++E+ IEG DEE E++ RAR L I + Sbjct: 364 LDIDEELADLLIEEGFSTLEEVAYVPLAEMLEIEGLDEEIVNELRNRARNVLLTEAIATE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +K+ VSE+L + G+ ++ L + +KT +DLA +VD+L Sbjct: 424 EKLE--SVSEDLIGLEGMSKELAAKLAGHDVKTRDDLAELAVDEL 466 >gi|269958718|ref|YP_003328505.1| transcription elongation factor [Anaplasma centrale str. Israel] gi|269848547|gb|ACZ49191.1| transcription elongation factor [Anaplasma centrale str. Israel] Length = 524 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 224/534 (41%), Positives = 345/534 (64%), Gaps = 44/534 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG I Sbjct: 13 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVI 71 Query: 61 SLFRLLEVVE---------------EVENYTC-QISLKVARDRDPSIDIGGVVSDPLPPM 104 S+ R VV EV Y +IS VA +D + +G ++ +PLPP+ Sbjct: 72 SISRQALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKD--VKVGDILLEPLPPV 129 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 D + + AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G Sbjct: 130 DVDYNSAKVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGY 189 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + TI E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GI Sbjct: 190 LPVYNTIRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGI 249 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D Sbjct: 250 VSIKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDL 309 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FV++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I Sbjct: 310 AKFVVSAIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIG 369 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 +E +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+E Sbjct: 370 DETESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNE 429 Query: 404 ETAVEIQGRAREYL-----EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 E AVE++ RA EYL E ++I ++ + VSEE+ +P ++ + V L E GI+ Sbjct: 430 EIAVELKKRAAEYLVRRREEALEI-----LKSMSVSEEVLELPYLEIEDVVKLCEGGIRN 484 Query: 459 MEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 +ED+A D+ F + K+QV+S+I+ +R +MGW+ Sbjct: 485 VEDIASMCTDE--------------FYDTVPKARLSKEQVDSIILESRRRMGWV 524 >gi|238027585|ref|YP_002911816.1| transcription elongation factor NusA [Burkholderia glumae BGR1] gi|237876779|gb|ACR29112.1| Transcription elongation factor NusA [Burkholderia glumae BGR1] Length = 491 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/467 (44%), Positives = 326/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV+I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVQIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +D+G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQQPGVDVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR DRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVSDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDRLRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ S++ L ENG++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLEGMTSELLAKLAENGVQTRDDLAELAVDELV 468 >gi|56416867|ref|YP_153941.1| transcription elongation factor NusA [Anaplasma marginale str. St. Maries] gi|56388099|gb|AAV86686.1| transcription termination factor A [Anaplasma marginale str. St. Maries] Length = 515 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 219/529 (41%), Positives = 343/529 (64%), Gaps = 34/529 (6%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG + Sbjct: 4 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVV 62 Query: 61 SLFRLLEVVE---------------EVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPM 104 S+ R VV EV Y ++S VA +D + +G ++ +PLPP+ Sbjct: 63 SISRQALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKD--VKVGDILFEPLPPV 120 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 D + + A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G Sbjct: 121 DVDYNSAKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGY 180 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + TI E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GI Sbjct: 181 LPVYNTIRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGI 240 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D Sbjct: 241 VSIKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDL 300 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FV++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I Sbjct: 301 AKFVVSAIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIG 360 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 +E +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+E Sbjct: 361 DETESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNE 420 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 E AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A Sbjct: 421 EIAVELKKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIA 480 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + K+QV+S+I+ +R ++GWI Sbjct: 481 SMCTDE--------------FYDMVPKARLSKEQVDSIILESRKRVGWI 515 >gi|82702986|ref|YP_412552.1| transcription elongation factor NusA [Nitrosospira multiformis ATCC 25196] gi|82411051|gb|ABB75160.1| NusA antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 495 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/466 (43%), Positives = 321/466 (68%), Gaps = 4/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++++++V + + ++ A + + +D+RV I+ +TGD R + Sbjct: 4 EVLLLVDALAREKNVEKNIVFAALELALASATKKRFNEDADVRVSIDHQTGDYQSLRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ QISL A ++P I + + + L P++FGR+ Q+AKQVI QK+R+A Sbjct: 64 VVADDAVEDPARQISLSEAFRQNPEIQLDEYIEEILEPVEFGRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ +++GT+KR+E GN I++ G + V+ RD+ I +ENLR GDRV++Y Sbjct: 124 EREQILNDFLERKEYMVTGTIKRMERGNAIIESGRVEAVLPRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ + R RGPQ++LSR P+F++KLF +EVPEI G++++K +RDPGSRAK+AV S+D Sbjct: 184 LHRIDRTTRGPQLILSRIVPEFLIKLFELEVPEIEEGLLEIKVAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G CVGMRGSRVQAV EL E++DI++WS D ATFVINAL PA ++ +++DE+ Sbjct: 244 QRVDPIGTCVGMRGSRVQAVTGELAGERVDIILWSDDPATFVINALAPAEISSILVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++F+ FM+ Sbjct: 304 HSMDIVVDEGNLAQAIGRGGQNVRLASELTGWELNIMTMEESQAKNEEEFSVLRHLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L EGF +EE+A V +SE+ IE FDE+T E++ RAR L I + Sbjct: 364 LDVDEEVADILAQEGFTTLEEVAYVPLSEMMEIEAFDEQTVNELRNRARNALLTEAIVSE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +K+ ++E+L ++ G+DS+ L G+ T EDLA +VDDL+ Sbjct: 424 EKVEH--IAEDLLALEGMDSQTARELAAKGVSTQEDLADLAVDDLV 467 >gi|78066110|ref|YP_368879.1| transcription elongation factor NusA [Burkholderia sp. 383] gi|77966855|gb|ABB08235.1| NusA antitermination factor [Burkholderia sp. 383] Length = 491 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/467 (44%), Positives = 326/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L ARD++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEARDQNPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELV 468 >gi|257094534|ref|YP_003168175.1| transcription elongation factor NusA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047058|gb|ACV36246.1| NusA antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 490 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/465 (43%), Positives = 320/465 (68%), Gaps = 4/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + D +A EK++ +D+V + ++ A + +++RV ++ ETGD FR E Sbjct: 4 EILLLVDVLAREKNVTKDIVFGALEMALASATKKRVHDNANVRVVVDRETGDFETFRRWE 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + + QI L A+++DP ++IG + + L P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VVADGDFLDEEQQIPLSDAQEQDPEVEIGDFLEESLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++GT+KR+E GN I++ G + V+ RD+ I RENLR GDRVK+Y Sbjct: 124 EREQILNDFLARKEHLVTGTIKRMERGNAIIETGKIEAVLPRDQMIPRENLRIGDRVKAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F+++LF +EVPE+ +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRAARGPQLILSRTAPEFIIRLFALEVPEVDDGLLEIKAAARDPGMRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRG RV AV EL E++DIV+WS D A FVI AL PA V+ +++DE+ Sbjct: 244 QRIDPIGTCVGMRGMRVTAVTNELAGERVDIVLWSADPAQFVIGALAPAEVSSIIVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L++AIGR GQNVRLAS++TGWTI+++TEEE + + FM+ Sbjct: 304 HSMDVVVDEQNLAIAIGRGGQNVRLASEMTGWTINLMTEEESKTLVEAEAAAIRVLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A++L+ EGF+ +EE+A V + E+ IE FDE T E++ RAR L I + Sbjct: 364 LDVDEELANILIEEGFSTLEEVAYVPLHEMIEIESFDEATVQELRERARNVLLTDAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +KI E V+E++ ++ G+D + L +GIKT +DLA +VD+L Sbjct: 424 EKIGE--VAEDMLNLEGMDKVLAGKLASSGIKTRDDLADLAVDEL 466 >gi|134295573|ref|YP_001119308.1| transcription elongation factor NusA [Burkholderia vietnamiensis G4] gi|134138730|gb|ABO54473.1| NusA antitermination factor [Burkholderia vietnamiensis G4] Length = 491 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERERLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLTKLAEHGVQTRDDLAELAVDELV 468 >gi|325981567|ref|YP_004293969.1| NusA antitermination factor [Nitrosomonas sp. AL212] gi|325531086|gb|ADZ25807.1| NusA antitermination factor [Nitrosomonas sp. AL212] Length = 490 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/453 (45%), Positives = 311/453 (68%), Gaps = 4/453 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EKS+++++V + + ++ A + + + R+ I+ ETGD FR Sbjct: 4 EILLLVDALAREKSVEKEIVFTALELALSSATKKRFQEDIETRISIDRETGDHQSFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ Q++L A D +I +G + PL P++FGR+ Q+AKQVI QK+REA Sbjct: 64 VVNDDSVEDSARQVALSDAIKIDANIQVGDHLEKPLEPIEFGRIGAQAAKQVIFQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ +I+GT+KR+E GN I++ G + ++RD+ I +ENLR GDRV++Y Sbjct: 124 EREQTLNDFLEREDYLINGTIKRMERGNAIIESGKIEAELQRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V R RGPQ+ LSR P+F++KLF +EVPEI G++++KA +RDPGSRAK+AV S+D Sbjct: 184 LYKVDRAARGPQLKLSRISPEFLMKLFELEVPEIEEGLLEIKAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRGSRVQAV++EL E++DIV+WS D ATF+INAL PA ++ +++DE+ Sbjct: 244 QRIDPIGTCVGMRGSRVQAVISELAGERVDIVLWSDDPATFIINALAPAEISSIMVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ ++ Q FMQ Sbjct: 304 HSMDIVVDDDNLAQAIGRGGQNVRLASELTGWELNIMTIEESKTKHEQETSQICQLFMQK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE IA +L+ EGF +EE+A + ++E+ IE DEET EI+ RAR L I + Sbjct: 364 LDVDEEIAEILMQEGFVSLEEVAYIPLNEMLEIESLDEETVNEIRNRARNVLLTDAIANE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 +K+ V+E+L SI G+D I L GI T Sbjct: 424 EKVEH--VAEDLLSIEGMDINIIRELAAKGIIT 454 >gi|254252537|ref|ZP_04945855.1| Transcription elongation factor [Burkholderia dolosa AUO158] gi|124895146|gb|EAY69026.1| Transcription elongation factor [Burkholderia dolosa AUO158] Length = 491 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 326/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRTLFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVQTRDDLAELAVDELV 468 >gi|34496916|ref|NP_901131.1| transcription elongation factor NusA [Chromobacterium violaceum ATCC 12472] gi|34102772|gb|AAQ59136.1| N utilization substance transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 492 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/454 (45%), Positives = 313/454 (68%), Gaps = 5/454 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66 E+L + DA+A EK++ +DVV S + ++ A + + D+RVEI+ TG FR Sbjct: 4 EILLLVDALASEKNVSKDVVFSALEMALASATKKKFTDDEMDVRVEIDRHTGQYQTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ +E+ + +I L ARDRDP I++G + +P+ ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 LVVEDELLESESKEIGLIDARDRDPRIELGAFIEEPMEAVEFGRIGAQTAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ EF + ++ GT+KR+E GN IV+ G + V+ RD+ I +ENLR GDRVK+ Sbjct: 124 AEREQLLNEFLQRREHLVIGTIKRIERGNAIVECGKLEAVLPRDQMIPKENLRVGDRVKA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R+ RGPQ++LSRT P+F+VKLF +EVPEI G+++++A RDPG RAK+AV ++ Sbjct: 184 YLLRIDRQGRGPQLILSRTAPEFLVKLFELEVPEIEEGMLEIRAAVRDPGMRAKIAVKAN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ IDP G C+GMRGSRVQAV EL E++DIV+W+P+ A FVINAL PA V+++++DED Sbjct: 244 DARIDPQGTCIGMRGSRVQAVTQELAGERVDIVLWAPEPAQFVINALSPAEVSRIMVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++VIV +EQL+LAIGR GQNV+LA++LTGW ++I+T E Q + Q F+ Sbjct: 304 NHSMDVIVEEEQLALAIGRSGQNVKLAAELTGWYLNIMTVAEAEEKHQAEDAALRQLFVS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE A LV EGFA +EE+A V + E+ IEGF+EE E++ RAR+ L I Sbjct: 364 ALSVDEDTAAKLVEEGFAALEEVAYVPLEEMLEIEGFNEELVGELRSRARDALLTQAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 ++++ V+++L + G+D+++ L G+ T Sbjct: 424 EEQVE--NVADDLKDVEGLDAELVRKLAAGGVTT 455 >gi|325526251|gb|EGD03870.1| transcription elongation factor NusA [Burkholderia sp. TJI49] Length = 491 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELV 468 >gi|56478754|ref|YP_160343.1| transcription elongation factor NusA [Aromatoleum aromaticum EbN1] gi|56314797|emb|CAI09442.1| N utilization substance protein A [Aromatoleum aromaticum EbN1] Length = 491 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/469 (44%), Positives = 323/469 (68%), Gaps = 10/469 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ +TGD FR Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRINDEADVRVTIDRDTGDYESFRRWV 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ P I++G + +PL P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VMPDEEVVNDEAEMGIIDAREMVPGIELGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ ++SG++KR+E GN I+++G + VI RD+ I RENLR GDRVK++ Sbjct: 124 EREQILNDFLERKEHLVSGSIKRMERGNAIIEIGRLEAVIPRDQMIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F+ KLF +EVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRGARGPQLILSRTAPEFVGKLFELEVPEIEDGLLEIKACARDPGLRAKIAVQSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FVI AL+PA V +V+DE+ Sbjct: 244 PRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSADPAQFVIAALQPAEVVSIVVDEES 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT---QFF 362 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++EEE + QK ER + F Sbjct: 304 HAMDVVVDENNLAIAIGRNGQNVKLASELTGWTINLMSEEESA---QKTGQEREGLRELF 360 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VD+ +A +L+ EGF+ +EE+A V ++E+ IE FDE T E++ RAR L I Sbjct: 361 MEKLDVDDELADILIDEGFSSLEEIAYVPLAEMLEIEAFDEGTVNELRNRARNVLLTEAI 420 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ + VS++L ++ G+D + L +G+ T +DLA +VD+L+ Sbjct: 421 VTEEHLE--NVSDDLINLEGMDKSLAATLARHGVLTRDDLADLAVDELV 467 >gi|302878488|ref|YP_003847052.1| NusA antitermination factor [Gallionella capsiferriformans ES-2] gi|302581277|gb|ADL55288.1| NusA antitermination factor [Gallionella capsiferriformans ES-2] Length = 490 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/469 (44%), Positives = 314/469 (66%), Gaps = 4/469 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA++ EK++D++VV S + ++ A + + +D+RV I+ TG+ FR E Sbjct: 4 EVLLLVDALSREKNVDKEVVFSALESALASATKKRFEDEADVRVAIDRNTGEFESFRCWE 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ E E I L+ A RDP+I +GG + +PL +DFGR+ Q+AKQVI QK+R+A Sbjct: 64 VMDDETFETPDLHIKLEEALKRDPAIALGGFIEEPLESVDFGRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SGTVKR+E G+ IV+ G + ++ RD+ I +EN+R GDRV+++ Sbjct: 124 EREQILADFMDRKEHLVSGTVKRLERGSAIVEFGKIEALLPRDQMIPKENMRIGDRVRAH 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQV+LSRT +VKLF +EVPEI ++++ +RDPGSRAK+AV S D Sbjct: 184 LLRVDRGPRGPQVILSRTSTDLLVKLFELEVPEIEENLLEIVGAARDPGSRAKIAVQSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRGSRVQ+V EL E++DI++WS D AT+VIN+L PA V+ +V+DED Sbjct: 244 QRIDPIGTCVGMRGSRVQSVTNELAGERVDIILWSEDPATYVINSLAPAEVSSIVVDEDR 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +E L+ AIGR GQNVRLAS++TGW ++I+T E+ ++F + FM+ Sbjct: 304 HSMDVVVEEENLAQAIGRGGQNVRLASEMTGWELNIMTVEQAQEKHDQEFVKTRAIFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGFA +EE+A V + E+ IE FDE+T E++ RAR L + + Sbjct: 364 LDVDEEVADILVQEGFATLEEVAYVPVEEMLEIETFDEDTVNELRSRARNALLNAALVSE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 +K+ E G+ + L + G++ ++ L G+ T E LA VD+L+ S Sbjct: 424 EKV-EHGI-DGLLKLDGMNDELARELAVKGVTTQEQLADLDVDELVELS 470 >gi|297537315|ref|YP_003673084.1| transcription termination factor NusA [Methylotenera sp. 301] gi|297256662|gb|ADI28507.1| transcription termination factor NusA [Methylotenera sp. 301] Length = 488 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/465 (43%), Positives = 321/465 (69%), Gaps = 6/465 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RV I+ E+G+ FR + Sbjct: 4 EILLLVDALAHEKNVSKEVIFTALELALASATKKKHHDDADVRVSIDRESGEYETFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE +EN QI + + +++G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 YVEYDLLENSAYQIDEE--SEHAKGLNVGDYYEEPLESIEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV+++ Sbjct: 122 EREQILEDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P F+V+LF +EVPEI G+++++A +RDPG R+K+AV S+D Sbjct: 182 LSRIERGGRGPQLILSRITPDFLVRLFELEVPEIEEGLLEIRAAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRIDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q +F +Q FM Sbjct: 302 HSMDVVVDEEQLALAIGRNGQNVRLASELTGWTLNILTVDQAAQKNQDEFAGVSQLFMDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDAEVAEILVQEGFSTLEEIAYVPLAEMNEIEAFDEDTIEELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +K+ E SE+L ++ G+D++ L G+ TM+DLA +VD+L Sbjct: 422 EKVEE--ASEDLLAMEGMDAETAHLLASKGVATMDDLAELAVDEL 464 >gi|53804603|ref|YP_113778.1| transcription elongation factor NusA [Methylococcus capsulatus str. Bath] gi|53758364|gb|AAU92655.1| N utilization substance protein A [Methylococcus capsulatus str. Bath] Length = 499 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/476 (44%), Positives = 316/476 (66%), Gaps = 9/476 (1%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 AN+ E+L + D V+ EK I+++V+ S + ++++ A + D+RV I+ +TGD F Sbjct: 2 ANK-EILLVVDVVSNEKDIEKEVIFSAIEEALRTATIKRHDGRYDVRVSIDRKTGDYETF 60 Query: 64 RLLEVVEEVENYTC-------QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 R +VVE E + +ISL+ AR P I +G V +P ++FGR+A Q+AKQ Sbjct: 61 RRWQVVEPREEFGNGVEFPEREISLEEARKTHPGITVGEFVEEPFDSIEFGRIAAQTAKQ 120 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN 175 VI+QKVREAER + ++ +VGE+++G +KR+E GNV +DLG N + I RDE I RE+ Sbjct: 121 VIVQKVREAERRKIADAYQSRVGELVTGVIKRIERGNVFLDLGGNVEAFIPRDEMIPRES 180 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 +R GDR++ + VR + RGPQ+ +SRT P+ ++ LF +EVPE+ ++++K +RDPG Sbjct: 181 VRSGDRLRGILSAVRPDARGPQLFVSRTAPELLIALFRLEVPEVSENLIEIKGAARDPGV 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV S+D +DPVGACVGMRGSRVQAV EL E+IDI++W+ + A FV+NA+ PA Sbjct: 241 RAKVAVKSNDPRLDPVGACVGMRGSRVQAVSNELAGERIDIILWNENEAQFVVNAMSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +V+DED +++ V E LS AIGR GQNVRLAS+LTGWT+++++ + Q++ Sbjct: 301 IVSIVVDEDRHSMDIAVADENLSQAIGRGGQNVRLASELTGWTLNVMSSTQADAKTQEET 360 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 Q F++ + VD +A +LV EGF+ VEELA V E+ IE FDE+ E++ RAR+ Sbjct: 361 RRLIQTFVEQLGVDGEVAEILVREGFSSVEELAYVPTKELLEIEEFDEDIVEELRNRARD 420 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 L I ++K+ E+ SE+L + G+D ++ L +GI+T+EDLA +V DLL Sbjct: 421 ALLIKAIASEEKLEEVEPSEDLLELEGMDRELAYRLARHGIRTLEDLADQAVPDLL 476 >gi|107022573|ref|YP_620900.1| transcription elongation factor NusA [Burkholderia cenocepacia AU 1054] gi|116689521|ref|YP_835144.1| transcription elongation factor NusA [Burkholderia cenocepacia HI2424] gi|254245586|ref|ZP_04938907.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|105892762|gb|ABF75927.1| NusA antitermination factor [Burkholderia cenocepacia AU 1054] gi|116647610|gb|ABK08251.1| NusA antitermination factor [Burkholderia cenocepacia HI2424] gi|124870362|gb|EAY62078.1| Transcription elongation factor [Burkholderia cenocepacia PC184] Length = 491 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELV 468 >gi|170732825|ref|YP_001764772.1| transcription elongation factor NusA [Burkholderia cenocepacia MC0-3] gi|169816067|gb|ACA90650.1| NusA antitermination factor [Burkholderia cenocepacia MC0-3] Length = 491 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELV 468 >gi|300113656|ref|YP_003760231.1| transcription termination factor NusA [Nitrosococcus watsonii C-113] gi|299539593|gb|ADJ27910.1| transcription termination factor NusA [Nitrosococcus watsonii C-113] Length = 506 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 313/468 (66%), Gaps = 4/468 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR E Sbjct: 4 EILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRSWE 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+E E+E Q+ L A RD S ++GGVV +P+ + FGR+A Q+AKQVI+QKVRE Sbjct: 64 VIEDEAELEAPERQMCLSEACKRDSSAEVGGVVKEPMESIAFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++ +V E++ G VKR++ GN+I+DLG N++G+I ++E I RE +RPGDR++ Sbjct: 124 AERAKVAAAYQGRVKEMVMGVVKRMDRGNIILDLGDNAEGIIPQEEMIPREAVRPGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV + Sbjct: 184 GYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA +V+DE Sbjct: 244 NETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEAVSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q FM Sbjct: 304 ERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L I Sbjct: 364 EQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ I + + +EL + +D + AL GI T E+LA +VD+L+ Sbjct: 424 NEETIETVQLDQELLDMEEVDHGLASALASKGITTKENLAEQAVDELM 471 >gi|289207909|ref|YP_003459975.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix] gi|288943540|gb|ADC71239.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix] Length = 495 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/469 (43%), Positives = 314/469 (66%), Gaps = 8/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAVA EK +D+D++ + ++ A R +G D+RV I+ E GD FR Sbjct: 4 EILLVADAVANEKGVDKDIIFDALESALAMATRKYHGGKMDVRVSIDREEGDYEAFRRWT 63 Query: 68 VVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+ E E+ QI L A+ ++P +G V+ +P+ +DFGR+A Q+AKQVI+QKVR Sbjct: 64 VVDDEDPEFESPEYQILLSYAQQKNPDAQVGDVIEEPVEAVDFGRIAAQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + E++D+VG ++ G VKR + VDLGN ++ +I R+ I RE +R DR+ Sbjct: 124 EAERAKVVEEYQDRVGTLVMGIVKRTDRNGTYVDLGNNAEALIPREHMIPRETVRTNDRL 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ ++R + RGPQ++LSR+ P+F+++LF +EVPE+ I+ + +RDPG RAK+AV Sbjct: 184 RGYLKEIRPDARGPQLILSRSAPEFLIELFKLEVPEVGQEIIDIMGAARDPGQRAKIAVR 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D +DPVGACVGMRGSRVQ+V EL E+IDI+VW + A FVINA+ PA V +V+D Sbjct: 244 SNDPRLDPVGACVGMRGSRVQSVSNELAGERIDIIVWDENPAQFVINAMSPAEVLSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++LSLAIGR GQN+RLASQLTGW ++++TEE+ + + + + FF Sbjct: 304 EDKQSMDIAVEEDKLSLAIGRGGQNIRLASQLTGWELNVMTEEQAAEKSEAEAQQLVTFF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+A++VDE +A +LV EGF+ ++E+A V +E+ +IE FDE+ E++ RA + L I Sbjct: 364 MEALDVDEEVAGILVQEGFSTLDEVAYVDEAELLAIEEFDEDIVAELRNRASDALLTRAI 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + +E+L S+ G+ + L +G+ TMEDLA + DD++ Sbjct: 424 AGGENYQP---AEDLLSMDGMTQGVANKLASHGVCTMEDLAEQAADDVV 469 >gi|171317091|ref|ZP_02906294.1| NusA antitermination factor [Burkholderia ambifaria MEX-5] gi|171097725|gb|EDT42552.1| NusA antitermination factor [Burkholderia ambifaria MEX-5] Length = 491 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L + GI ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKGLDGITPELLAKLAEHGMQTRDDLAELAVDELV 468 >gi|167570129|ref|ZP_02363003.1| transcription elongation factor NusA [Burkholderia oklahomensis C6786] Length = 491 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 326/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P ++IG + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEIGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ + +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLVPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+ Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELV 468 >gi|167562940|ref|ZP_02355856.1| transcription elongation factor NusA [Burkholderia oklahomensis EO147] Length = 491 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 326/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+ Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELV 468 >gi|167836822|ref|ZP_02463705.1| transcription elongation factor NusA [Burkholderia thailandensis MSMB43] Length = 491 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPEVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILVDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ +++ L E G++T +DLA +VD+L+ Sbjct: 424 EEKVETAAL--DLKSLDGVTAELLTKLAEQGVQTRDDLAELAVDELV 468 >gi|115351434|ref|YP_773273.1| transcription elongation factor NusA [Burkholderia ambifaria AMMD] gi|170700023|ref|ZP_02891048.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10] gi|172060473|ref|YP_001808125.1| transcription elongation factor NusA [Burkholderia ambifaria MC40-6] gi|115281422|gb|ABI86939.1| NusA antitermination factor [Burkholderia ambifaria AMMD] gi|170135082|gb|EDT03385.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10] gi|171992990|gb|ACB63909.1| NusA antitermination factor [Burkholderia ambifaria MC40-6] Length = 491 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 325/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L + G+ ++ L E+G++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELV 468 >gi|221214880|ref|ZP_03587848.1| transcription termination factor NusA [Burkholderia multivorans CGD1] gi|221165107|gb|EED97585.1| transcription termination factor NusA [Burkholderia multivorans CGD1] Length = 491 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 324/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELV 468 >gi|206559872|ref|YP_002230636.1| transcription elongation factor NusA [Burkholderia cenocepacia J2315] gi|198035913|emb|CAR51805.1| N utilization substance protein A [Burkholderia cenocepacia J2315] Length = 491 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 324/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+ ++T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHAVQTRDDLAELAVDELV 468 >gi|77165586|ref|YP_344111.1| transcription elongation factor NusA [Nitrosococcus oceani ATCC 19707] gi|76883900|gb|ABA58581.1| NusA antitermination factor [Nitrosococcus oceani ATCC 19707] Length = 506 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/480 (43%), Positives = 319/480 (66%), Gaps = 7/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR E Sbjct: 4 EILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRSWE 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+E E++ Q+ L A RDP+ ++ G V +P+ + FGR+A Q+AKQVI+QKVRE Sbjct: 64 VIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++ ++ E++ G VKR++ GN+I+DLG N++G++ ++E I RE +RPGDR++ Sbjct: 124 AERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV + Sbjct: 184 GYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+DE Sbjct: 244 NETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q FM Sbjct: 304 ERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L I Sbjct: 364 EQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ I + + +EL + ID + AL GI T E+LA +VD+L+ E +G N EK Sbjct: 424 NEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELM---EIEGMNREK 480 >gi|161524929|ref|YP_001579941.1| transcription elongation factor NusA [Burkholderia multivorans ATCC 17616] gi|189350321|ref|YP_001945949.1| transcription elongation factor NusA [Burkholderia multivorans ATCC 17616] gi|221197756|ref|ZP_03570802.1| transcription termination factor NusA [Burkholderia multivorans CGD2M] gi|221204686|ref|ZP_03577703.1| transcription termination factor NusA [Burkholderia multivorans CGD2] gi|160342358|gb|ABX15444.1| NusA antitermination factor [Burkholderia multivorans ATCC 17616] gi|189334343|dbj|BAG43413.1| N utilization substance protein A [Burkholderia multivorans ATCC 17616] gi|221175543|gb|EEE07973.1| transcription termination factor NusA [Burkholderia multivorans CGD2] gi|221181688|gb|EEE14089.1| transcription termination factor NusA [Burkholderia multivorans CGD2M] Length = 491 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 324/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELV 468 >gi|119477402|ref|ZP_01617593.1| N utilization substance protein A [marine gamma proteobacterium HTCC2143] gi|119449328|gb|EAW30567.1| N utilization substance protein A [marine gamma proteobacterium HTCC2143] Length = 502 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 213/480 (44%), Positives = 322/480 (67%), Gaps = 6/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + RD++ + ++ A + Y +DI V I+ E+G FR E Sbjct: 4 EILLVAEAVSNEKGVPRDIIFEAIEQALATATKKRYDEDADIHVIIDRESGGYETFRRWE 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +E+ Q + + A ++D S+ IG V + + + FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVSDDEMALLGTQFTTEEAAEKDTSLQIGDVYEEKIENVGFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + E++ +VGE+ISGTVK+V N+IVDLGN ++G + R+E + RE R GDRV++ Sbjct: 124 ERAQVVEEYEGRVGELISGTVKKVTRDNIIVDLGNNAEGSLPREELVGREVFRMGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + DVR E RGPQ+ LSR + +++LF +EVPEI ++ ++A +RDPGSRAK+AV ++ Sbjct: 184 ILQDVRPEARGPQLFLSRACSEMLIELFKVEVPEISEEVIDIRAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED Sbjct: 244 DGRIDPIGACVGMRGSRVQAVSGELGNERVDIILWDDNPAQLVINAMAPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V + L+ AIGR GQNVRLAS LTGWTI++++ E+ S +K+ FM+ Sbjct: 304 SRSMDVAVAADNLAQAIGRSGQNVRLASDLTGWTINVMSLEDASEKHEKESGAVIAEFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++VDE IA +LV EGF +EE+A V + E+A IEGFDE+ A E++ RA++ L I Sbjct: 364 SLDVDEDIAEVLVDEGFTSLEEVAYVPLEELAGIEGFDEDIAEELRARAKDALLTQAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 ++++ ++ +E+L ++ G++ + L GI TMEDLA +V+DL+ G E + G + Sbjct: 424 EEQLGDVEPAEDLLTMDGMERHLAFVLASKGIITMEDLAEQAVEDLMDIEGLEEKQAGEL 483 >gi|167582087|ref|ZP_02374961.1| transcription elongation factor NusA [Burkholderia thailandensis TXDOH] Length = 491 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 324/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELV 468 >gi|149375756|ref|ZP_01893524.1| N utilization substance protein A [Marinobacter algicola DG893] gi|149359881|gb|EDM48337.1| N utilization substance protein A [Marinobacter algicola DG893] Length = 497 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 208/481 (43%), Positives = 319/481 (66%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYDDEEADIRVSIDRRTGEYETFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ V +++++ A D D S+ G + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTMQEAEDIDKSLQPGDTHEEKVESVAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+ Sbjct: 124 AERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREHLIPRETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 SLLQEIRTDHRGPQLILSRTDPQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE +++++N + F Sbjct: 304 DRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYNSLLEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +L+ EGF +EE+A + + E+ +I+GFDEET E++ RA++ L + Sbjct: 364 GNLDVDEEFAGVLIEEGFTSIEEVAYIPMEEMLAIDGFDEETVTELRRRAKDALLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + +E+L ++ G+D + L GI+TMEDLA SVDDLL G E + G Sbjct: 424 SEEALEGAEPAEDLLAMDGMDRGLAFKLAGMGIRTMEDLAEQSVDDLLDIEGMEEERAGQ 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|312796186|ref|YP_004029108.1| N utilization substance protein A [Burkholderia rhizoxinica HKI 454] gi|312167961|emb|CBW74964.1| N utilization substance protein A [Burkholderia rhizoxinica HKI 454] Length = 491 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 322/467 (68%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++++DVV + + ++ A + L+ DIRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVNKDVVFAALEAALASATKKLFDEDVDIRVSIDRESGEHETFRRWR 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V + ++ +I L AR++DP + G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 IVPDEAGLQQPDQEILLFEAREQDPDAQLDGYIEEPIPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +I++G+VKR++ GN++V+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEKIMTGSVKRLDKGNLVVESGRVEALLRRDQLIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF EVPEI G++++K+ +RDPG RAK+AV + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEFEVPEIEQGLLEIKSAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM+ Sbjct: 304 KHAMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAEKQSQERKVLRDLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ S EL S+ G+D ++ L E+ I T +DLA +VD+L+ Sbjct: 424 EEKVE--NASLELKSLEGMDRELLAKLAEHEIHTRDDLAELAVDELV 468 >gi|186476488|ref|YP_001857958.1| transcription elongation factor NusA [Burkholderia phymatum STM815] gi|184192947|gb|ACC70912.1| NusA antitermination factor [Burkholderia phymatum STM815] Length = 491 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFDEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKADAQIDDFLEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGESIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ GV+ +L S+ G+D+++ L E+ I+T +DLA +VD+L+ Sbjct: 424 EEKVE--GVALDLKSLDGMDAELLAKLAEHQIQTRDDLAELAVDELV 468 >gi|226946308|ref|YP_002801381.1| transcription elongation factor NusA [Azotobacter vinelandii DJ] gi|226721235|gb|ACO80406.1| Transcription termination factor NusA [Azotobacter vinelandii DJ] Length = 493 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/480 (44%), Positives = 324/480 (67%), Gaps = 6/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + Y D+RV+IN ++G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRYEDDVDLRVQINRQSGAYDTFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +EN +++L AR+R P + +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDDLLENPAAELTLDEARERKPDVRVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G RV++ Sbjct: 124 ERAQVVDVYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGARVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P +++LF +EVPEI G+++VKA SRDPGSRAK+AV S Sbjct: 184 LLKEIRPENRGPQLILSRTAPGMLIELFRIEVPEIAEGLIEVKAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V + L+ AIGR GQNVRLASQLTGWT++++TE + ++ + + + F++ Sbjct: 304 AHAMDVAVADDNLAQAIGRGGQNVRLASQLTGWTLNVMTEGDIQAKQRAETGDILRSFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLAIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 ++K+ E +E+L S+ G+D ++ V L G+ T EDLA S+DDLL G E + G + Sbjct: 424 EEKLVEAHPAEDLLSLEGMDKELAVELAMRGVITREDLAEQSIDDLLDIDGMDEERAGKL 483 >gi|323525724|ref|YP_004227877.1| NusA antitermination factor [Burkholderia sp. CCGE1001] gi|323382726|gb|ADX54817.1| NusA antitermination factor [Burkholderia sp. CCGE1001] Length = 491 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 208/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|307730029|ref|YP_003907253.1| transcription termination factor NusA [Burkholderia sp. CCGE1003] gi|307584564|gb|ADN57962.1| transcription termination factor NusA [Burkholderia sp. CCGE1003] Length = 491 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 208/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|118594129|ref|ZP_01551476.1| NusA antitermination factor [Methylophilales bacterium HTCC2181] gi|118439907|gb|EAV46534.1| NusA antitermination factor [Methylophilales bacterium HTCC2181] Length = 488 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/464 (42%), Positives = 316/464 (68%), Gaps = 2/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ RD++ + + ++ A + + DIRVEI+ E+G+ FR Sbjct: 4 EILLLVDALAHEKNVARDIIFTALELALASATKKKFEADVDIRVEIDKESGEYESFRCWT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ + L DR +++G V+ + + ++FGR+ Q+AKQVI+QKVREAER Sbjct: 64 IVEDELLEIPEAELSPTDDRAKDLEVGDVIKEAIDSVEFGRIGAQAAKQVILQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ +F + +++SG ++R+E GN I+++G D V+ RD I +ENLR GDRV++ + Sbjct: 124 EQILNDFLARDEKLVSGQIRRMERGNAIIEVGRLDAVLPRDHMIPKENLRVGDRVRAILS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + RGPQ++LSRT P+F+++LF +EVPEI G++++ + SRDPG R+K+AV ++D Sbjct: 184 KIETGMRGPQLILSRTAPEFLIRLFELEVPEIEEGLLEIMSASRDPGLRSKIAVKANDQR 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 244 LDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSIEPAQFVINAMAPAEVSSIVVDEDKHS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++++V ++QL+ AIGR GQN+RLAS+LTGW ++I+TEEE ++++ +Q F++ ++ Sbjct: 304 MDLVVVEDQLAQAIGRNGQNIRLASELTGWELNILTEEESDQKNKEEYTSASQLFIEKLD 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF+ +EE+A V + E+ IE FDE+T E++ RA + I ++ Sbjct: 364 VDEDVADILVQEGFSSIEEVAYVPLEEMVQIEAFDEDTVNELRSRASAAILTAAIAKEES 423 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + +E+L S+ G+D + + GI TMEDLA SVD+LL Sbjct: 424 V--VDPAEDLKSMDGMDIDMAKLMASKGIVTMEDLAELSVDELL 465 >gi|261856064|ref|YP_003263347.1| NusA antitermination factor [Halothiobacillus neapolitanus c2] gi|261836533|gb|ACX96300.1| NusA antitermination factor [Halothiobacillus neapolitanus c2] Length = 491 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/471 (45%), Positives = 314/471 (66%), Gaps = 9/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAV+ EK +DR+V+ + ++ +AAR +G D RV+I+ ETGD FR + Sbjct: 4 EILFVADAVSNEKGVDREVIFEAIEAALAQAARKRHGGDIDTRVQIDHETGDYRTFRRWQ 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE E ++ L+ A+ DP I +G V + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEGDSSEFPEREMILEAAQMDDPDIKVGEFVEEEIESVEFGRIAAQAAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + + D+ G +I G +KR++ GNVI+DLG N + +I RDE I RE +RPGDR++ Sbjct: 124 ERRQIVDAYIDRKGSLIMGLIKRIDRGNVILDLGGNVEALIPRDEMIGREAVRPGDRLRG 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DVR E RGPQ+ +SRT PQF+++LF +EVPEI G++++K +RDPG RAK+AV S Sbjct: 184 YLADVRHEPRGPQLFVSRTAPQFLIELFKLEVPEIEQGLIEIKGAARDPGLRAKIAVESR 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DS IDPVG CVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V+DED Sbjct: 244 DSRIDPVGTCVGMRGSRVQSVTNELNGERVDIIIWDSNPAQFVINAMSPAEVVSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E+LS AIGR GQNVRLASQLTGW ++++ EEE + + T+ FM+ Sbjct: 304 RHSMDVAVTEEKLSQAIGRGGQNVRLASQLTGWHLNVMGEEEAVAKVETETRRATEAFMR 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL--EGIDI 422 ++VDE +A +LV GF+ +EE+A V +E+ +EGFDE E++ RAR+ L + I Sbjct: 364 DLDVDEDVAAVLVEAGFSSLEEIAYVPTAELLDVEGFDEGIVEELRNRARDALLVQAISD 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + EL ++ + G+ ++ L G+ T +DLA SVD++ + Sbjct: 424 DAGESTEEL----DIAQLEGMTPELLTILNAAGVHTSDDLAELSVDEMTAF 470 >gi|170696460|ref|ZP_02887586.1| NusA antitermination factor [Burkholderia graminis C4D1M] gi|170138613|gb|EDT06815.1| NusA antitermination factor [Burkholderia graminis C4D1M] Length = 491 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|270158099|ref|ZP_06186756.1| transcription elongation protein NusA [Legionella longbeachae D-4968] gi|289163636|ref|YP_003453774.1| Transcription elongation protein nusA [Legionella longbeachae NSW150] gi|269990124|gb|EEZ96378.1| transcription elongation protein NusA [Legionella longbeachae D-4968] gi|288856809|emb|CBJ10620.1| Transcription elongation protein nusA [Legionella longbeachae NSW150] Length = 492 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/480 (41%), Positives = 327/480 (68%), Gaps = 7/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R ++G +R++++P TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKIFGLDIGVRIKLDPRTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +++E+ Q++L+ A+ R+PS+++G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVTDDDLEDPDRQLTLEQAKTRNPSVNVGDRIEESIPSIEFGRIEAQAARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELVIDQFRGKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRTEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI +++VKA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIEVKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA ++ +V+DED Sbjct: 244 DGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADISSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E ++ ++ + F Sbjct: 304 THTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNLEESSKIIKLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEIAYVPKEELLAIEEFDDEIVEELRNRANDNLLTMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 K + + L ++ G+ + L GI +MEDLA SVD+LL G +E+K + Sbjct: 424 NKDLSG-QPDDSLLTMEGMTQDLANQLATRGITSMEDLAEQSVDELLELDGMTEDKAAAL 482 >gi|85712989|ref|ZP_01044027.1| transcription elongation factor NusA [Idiomarina baltica OS145] gi|85693158|gb|EAQ31118.1| transcription elongation factor NusA [Idiomarina baltica OS145] Length = 497 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 315/473 (66%), Gaps = 5/473 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+R++I+ TG+ FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIDVRIDIDRATGEFDTFRRWL 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +E+ +ISL A+ DPS+ +G V + + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTDTGLEHPYREISLSAAQYEDPSLQLGDYVEEQIESIQFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + E++D+VGE+++GTVKR +VI+DLGN ++ +I R+E + RE++RPGDRV Sbjct: 124 EAERAQVVDEYRDQVGELVTGTVKRANREHVILDLGNNAEAIIYREEMLPRESVRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +YDVR E RG Q+ ++R+ P+F+++LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 184 RGLLYDVRPEARGAQLFVTRSRPEFLMELFRIEVPEIGEEMIELKGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V+D Sbjct: 244 SNDRRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVASIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIG+ GQNVRLASQL+GWT++++T ++ + + + N F Sbjct: 304 EDAHTMDIAVAADNLAQAIGKSGQNVRLASQLSGWTLNVMTVDDFNEKNEAETNRLLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++++DE A +LV EGF+ +EE+A V ++E IEG DE+ E++GRAR YL + Sbjct: 364 ITSLDIDEDFASVLVDEGFSSLEEVAYVPVAEFLEIEGMDEDIVEELRGRARAYLTTKAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 ++ + E L + G+D + L G+ ++E+LA +DDL G E Sbjct: 424 ADEESLESAEPDESLLGLEGMDRHLAYVLASRGVTSLEELAEQGIDDLAGIEE 476 >gi|253995583|ref|YP_003047647.1| transcription elongation factor NusA [Methylotenera mobilis JLW8] gi|253982262|gb|ACT47120.1| NusA antitermination factor [Methylotenera mobilis JLW8] Length = 488 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/466 (42%), Positives = 323/466 (69%), Gaps = 6/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++D+ V+ + + ++ A + + +D+RV I+ E+G+ FR + Sbjct: 4 EILLLVDALAHEKNVDKSVIFTALELALASATKKKHHDDADVRVAIDRESGEYQTFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ +EN QI + +R + IG +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 YVDYDLLENSAYQIDEE--DERSKGLTIGDYYEEPLENLEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV++Y Sbjct: 122 EREQILQDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F+V+LF +EVPEI G++++++ +RDPG R+K+AV S+D Sbjct: 182 LLRIERSGRGPQLILSRIIPEFLVRLFELEVPEIEEGLLEIRSAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q+++ +Q FM+ Sbjct: 302 HSMDVVVEEEQLALAIGRSGQNVRLASELTGWTLNILTVDQAAQKNQEEYAGVSQLFMEK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L + + Sbjct: 362 LDVDEEVAEILVQEGFSTLEEIAYVPLAEMNQIEAFDEDTVEELRKRARAAL--LTEAIA 419 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 K+ + +E+L ++ G+D L GI TM+DLA ++D+L+ Sbjct: 420 KEEKVEEAAEDLLTLEGMDDATAHQLAAKGISTMDDLAELAIDELV 465 >gi|88607683|ref|YP_505048.1| transcription elongation factor NusA [Anaplasma phagocytophilum HZ] gi|88598746|gb|ABD44216.1| N utilization substance protein A [Anaplasma phagocytophilum HZ] Length = 514 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 212/526 (40%), Positives = 339/526 (64%), Gaps = 29/526 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA ++ +D V++ + +++ + YG S I+V I+ +TG I Sbjct: 4 LYNFDNLELIRVARDVAEQRGLDLGVIVEAIEQALEVVSHVKYGD-SKIKVSIDRKTGVI 62 Query: 61 SLFRLLEVVEE---VENYTCQIS------LKVARDRDP-----SIDIGGVVSDPLPPMDF 106 S+ R + VV++ ++ C I+ K+ R D +++G ++ +PLPP+D Sbjct: 63 SVARQVLVVKDDFTFDSEECGIAAEEVNKYKLVRISDALADGEQVEVGDILLEPLPPIDI 122 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY N+IVDL S+G + Sbjct: 123 DYNSAKLAKQKVAQLIMMQERKRQYEEFKDRVGDLVYGVVKRVEYNNIIVDLNGSEGYLP 182 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 TI E RP RVK+++ DVRRE GPQ+ LSR +FM LF E+ E+Y+GIV + Sbjct: 183 VYNTIRGEVFRPNARVKAHVEDVRREATGPQIFLSRVSKRFMELLFKQEISEVYDGIVTI 242 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 KA++RD GSR+K+AV+SSD ++DPVGAC+G RG R+Q +V EL EKID++ +SPD A F Sbjct: 243 KALARDAGSRSKVAVYSSDKNVDPVGACIGARGVRIQNIVAELNGEKIDVIPYSPDLAKF 302 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW+ID+I +E Sbjct: 303 VVSAIAPAEVVKVIIDEDVEKIELVVPESQVSLAIGRYGQNIRLASELVGWSIDVIGDET 362 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +S + K+ + + F++ ++V+EII LLV+EGF+ +E+L ++ +IA+++GF+EE A Sbjct: 363 ESTRKAKELSSGAKVFVEDLDVEEIIGQLLVSEGFSSIEDLDRAEVGDIAAVDGFNEEIA 422 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E++ RA E L + + + VSEE+ +P + + V L ENG++++ED+A Sbjct: 423 RELKTRAAECLARKRKEAIEMLESMSVSEEVMQLPFLQVEDIVKLSENGVRSVEDIASLC 482 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + K+QV+S+I+ +R ++GW+ Sbjct: 483 TDE--------------FYDIVPRAKLSKEQVDSVILESRKRVGWV 514 >gi|83719213|ref|YP_443082.1| transcription elongation factor NusA [Burkholderia thailandensis E264] gi|167620248|ref|ZP_02388879.1| transcription elongation factor NusA [Burkholderia thailandensis Bt4] gi|257139311|ref|ZP_05587573.1| transcription elongation factor NusA [Burkholderia thailandensis E264] gi|83653038|gb|ABC37101.1| N utilization substance protein A [Burkholderia thailandensis E264] Length = 491 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/467 (43%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E ++T +DLA +VD+L+ Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQSVQTRDDLAELAVDELV 468 >gi|91782988|ref|YP_558194.1| transcription elongation factor NusA [Burkholderia xenovorans LB400] gi|296158771|ref|ZP_06841600.1| NusA antitermination factor [Burkholderia sp. Ch1-1] gi|91686942|gb|ABE30142.1| NusA antitermination factor [Burkholderia xenovorans LB400] gi|295890976|gb|EFG70765.1| NusA antitermination factor [Burkholderia sp. Ch1-1] Length = 491 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|295676260|ref|YP_003604784.1| transcription termination factor NusA [Burkholderia sp. CCGE1002] gi|295436103|gb|ADG15273.1| transcription termination factor NusA [Burkholderia sp. CCGE1002] Length = 491 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 324/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P+I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPNIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 RHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|89095215|ref|ZP_01168138.1| transcription elongation factor NusA [Oceanospirillum sp. MED92] gi|89080512|gb|EAR59761.1| transcription elongation factor NusA [Oceanospirillum sp. MED92] Length = 495 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/480 (43%), Positives = 320/480 (66%), Gaps = 6/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + ++V+ + ++ A + Y +DIRV I+ TGD FR Sbjct: 4 EILLVAEAVSNEKDVPKEVIFEAIEVALATATKKRYDEEADIRVVIDRATGDYETFRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EEV +++++ A + D ++ G + + + + FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVSNEEVPALGTELTMEEAEEIDTALQPGDIHEEQVESVAFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++D+ GE+ISG+VK+V N+IVDLGN ++ ++ RD+ I RE R GDRV++ Sbjct: 124 ERAKVVEQYRDRQGELISGSVKKVTRDNIIVDLGNNAEALLPRDQLIQREAFRMGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VR E RGPQ+++SR+ + +++LF +EVPEI +++++A SRDPGSRAK+AV ++ Sbjct: 184 VLKEVRSEGRGPQLIMSRSCNEMLIELFRIEVPEISEEVIEIRAASRDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +VLDE+ Sbjct: 244 DGRIDPVGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVLDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E L++AIGR GQNVRLAS+LTGW ++++TEE+ Q + F+ Sbjct: 304 THSMDVAVAEENLAMAIGRSGQNVRLASELTGWELNVMTEEDAQAKHQSEVGSVIDNFIN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ I+GFDE+ E++ RA++ L + I Sbjct: 364 HLDVDEDVAEVLVEEGFTTLEEVAYVPVDEMLEIDGFDEDIVEELRKRAKDALLNLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 ++K+ + +E+L ++ G+D + + GI TMEDLA S+DDLL G E K + Sbjct: 424 EEKLDKAEPAEDLLTMEGMDKHLAFLMAAQGIITMEDLAEQSIDDLLDIEGLDEEKAAAL 483 >gi|254496140|ref|ZP_05109038.1| transcription elongation factor NusA [Legionella drancourtii LLAP12] gi|254354627|gb|EET13264.1| transcription elongation factor NusA [Legionella drancourtii LLAP12] Length = 502 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/490 (42%), Positives = 326/490 (66%), Gaps = 17/490 (3%) Query: 8 ELLQIADA---------VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 ELL +A+A V E+ + ++V++ + +++ A R ++G +R++++P TG Sbjct: 4 ELLLVAEALSKISKPLSVPTERGVSKEVIILAIQAALESATRKIFGLEIGVRIKLDPRTG 63 Query: 59 DISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 + FR +VV ++VE Q++L A++R+P+I +G + + +P ++FGR+ Q+A+ Sbjct: 64 EYETFRFWDVVADEDDVEFPEHQLTLAQAKERNPAITVGERIEESIPSIEFGRIEAQAAR 123 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE 174 QVI+QKVREAERD +F+ K+G++I G+VK+V N+I+DLG ++ + R E + E Sbjct: 124 QVIMQKVREAERDLVIEQFRSKLGQLIYGSVKKVTRDNIIIDLGGKAEAFLPRTEMLPHE 183 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 RP DRV++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI ++ VKA +R+PG Sbjct: 184 MFRPNDRVRAYLYEIIPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIDVKAAAREPG 243 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +RAK+AV ++D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA Sbjct: 244 NRAKIAVKTNDGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPA 303 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +T +V+DED +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E Q++ Sbjct: 304 DITSIVVDEDTHTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNQEE 363 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 ++ + F A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA Sbjct: 364 SSKIVKLFTSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDDEIVEELRNRAN 423 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL--- 471 + L + +T K + E L ++ G+ ++ L E GI +MEDLA SVD+LL Sbjct: 424 DNLLTMALTSGKGLAG-APDESLLAMDGMTEELANKLAEKGITSMEDLAEQSVDELLEID 482 Query: 472 GWSENKGGNI 481 G SE K G + Sbjct: 483 GMSEEKAGAL 492 >gi|209520195|ref|ZP_03268966.1| NusA antitermination factor [Burkholderia sp. H160] gi|209499354|gb|EDZ99438.1| NusA antitermination factor [Burkholderia sp. H160] Length = 491 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPDIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILSDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|254447046|ref|ZP_05060513.1| NusA antitermination factor [gamma proteobacterium HTCC5015] gi|198263185|gb|EDY87463.1| NusA antitermination factor [gamma proteobacterium HTCC5015] Length = 499 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 313/468 (66%), Gaps = 6/468 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAV+ EK +D+DV+ + ++ A R + D RV IN E G FR Sbjct: 5 EILLVADAVSNEKGVDKDVIFEALEIALATATRKKHPDDIDARVSINREDGSYETFRRWL 64 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+E+ +EN ++ A D DPS +G V +P+ +D+GR+A Q+AKQVI+QKVRE Sbjct: 65 VIEDDLVMENVDAELRHMDAIDIDPSYKVGDYVEEPIESVDYGRIAAQTAKQVIVQKVRE 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + EF+D+ GE++ G VKRVE GNV VDLG N++G I R+E I RE++RPGDR++ Sbjct: 125 AERMQVVEEFQDREGELVMGLVKRVERGNVYVDLGGNAEGFIPREEMIPRESVRPGDRIR 184 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +VR E RGPQ+ +SRT PQF+++LF +EVPEI G++ + + SRDPG RAK+AV S Sbjct: 185 GLLREVRSELRGPQLFVSRTDPQFLIELFKIEVPEIGQGMIDILSASRDPGVRAKIAVRS 244 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQ+V EL E++DI+++ + A FVINA+ PA V +V+DE Sbjct: 245 NDPRLDPVGACVGMRGSRVQSVSNELSGERVDIILFDDNPAQFVINAMSPAEVVSIVVDE 304 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V E+LS AIGR GQN+RLAS+LT W ++++ EE + +++ ++ + FM Sbjct: 305 DNNSMDLAVTNEKLSQAIGRGGQNIRLASELTDWQLNVMDEESYAAKNEEEAHKYVEVFM 364 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF +EE+A V ++E IE FD+ E++ RAR+ L + Sbjct: 365 EQLDVDEEVATILVQEGFTSIEEVAYVPMAEFQEIEEFDDGIIEELRNRARDAL--LTKA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + ++L + +D ++ AL G+ TME+LA +VDDL+ Sbjct: 423 ILNEESDAQPEQDLLDMETMDEEMAYALAAIGVTTMEELAEQAVDDLM 470 >gi|307825109|ref|ZP_07655330.1| transcription termination factor NusA [Methylobacter tundripaludum SV96] gi|307733857|gb|EFO04713.1| transcription termination factor NusA [Methylobacter tundripaludum SV96] Length = 505 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/478 (43%), Positives = 313/478 (65%), Gaps = 9/478 (1%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 AN+ E+L + D + EK I++++V + +++ A + RV IN +TGD + Sbjct: 2 ANK-EILLVVDVFSNEKDIEKEIVFQAIESALEAATIKRHANQIKARVSINRKTGDYVTY 60 Query: 64 RLLEVVE-------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 R+ EVV+ +VE Q+ L+VAR +P + IG +V + + +DFGR+A Q+AKQ Sbjct: 61 RVWEVVDANSQIDGDVEFPETQVLLEVARFDNPDVQIGDLVEEEIESVDFGRIAAQTAKQ 120 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISREN 175 VII KVREAER + ++ +VGE+I+G VKR+E G+V +DLG + I +++ I RE Sbjct: 121 VIIHKVREAERKKIVDAYQSRVGELITGIVKRIEKGSVYLDLGGHVEAYIAKEDMIPREA 180 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 +R GDR++ Y+ DVR E RGPQ+ +SRT P+ ++ LF +EVPE+ G+++V +RDPGS Sbjct: 181 IRIGDRIRGYLKDVRSEPRGPQLFVSRTAPELLIALFRLEVPEVGEGLIEVMGAARDPGS 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV +D +DPVGACVGMRGSRVQ+V EL E++DI++W+P A FVINA+ PA Sbjct: 241 RAKIAVKGNDPRLDPVGACVGMRGSRVQSVSNELAGERVDIILWNPSDAQFVINAMSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +V+DED +++ V + LS AIGR GQNVRLA+QLTGW +++I + N + + Sbjct: 301 IQSIVVDEDKHSMDLAVSSDNLSQAIGRGGQNVRLATQLTGWELNVIDASKAEQNSEAEA 360 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ Q F+ +++DE IA +LV EGF VEE+A V +SE+ IEGFDEE ++ RA++ Sbjct: 361 DKIKQMFIDQLDIDEDIALILVEEGFNTVEEIAYVPVSEMLEIEGFDEELVNALRSRAKD 420 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 L I ++KI +++L + G+D + + GI TM+DLA SVDDLL + Sbjct: 421 ALLISAIAAEEKIETAEPAQDLLEMEGMDRDLAYDMASQGIITMDDLAEQSVDDLLNF 478 >gi|53719533|ref|YP_108519.1| transcription elongation factor NusA [Burkholderia pseudomallei K96243] gi|53724824|ref|YP_102761.1| transcription elongation factor NusA [Burkholderia mallei ATCC 23344] gi|76808602|ref|YP_333313.1| transcription elongation factor NusA [Burkholderia pseudomallei 1710b] gi|121598320|ref|YP_992838.1| transcription elongation factor NusA [Burkholderia mallei SAVP1] gi|124384704|ref|YP_001026181.1| transcription elongation factor NusA [Burkholderia mallei NCTC 10229] gi|126439048|ref|YP_001058778.1| transcription elongation factor NusA [Burkholderia pseudomallei 668] gi|126449841|ref|YP_001080549.1| transcription elongation factor NusA [Burkholderia mallei NCTC 10247] gi|126455004|ref|YP_001066030.1| transcription elongation factor NusA [Burkholderia pseudomallei 1106a] gi|134282331|ref|ZP_01769036.1| transcription termination factor NusA [Burkholderia pseudomallei 305] gi|167004351|ref|ZP_02270109.1| transcription termination factor NusA [Burkholderia mallei PRL-20] gi|167719819|ref|ZP_02403055.1| transcription elongation factor NusA [Burkholderia pseudomallei DM98] gi|167738820|ref|ZP_02411594.1| transcription elongation factor NusA [Burkholderia pseudomallei 14] gi|167816041|ref|ZP_02447721.1| transcription elongation factor NusA [Burkholderia pseudomallei 91] gi|167824417|ref|ZP_02455888.1| transcription elongation factor NusA [Burkholderia pseudomallei 9] gi|167845949|ref|ZP_02471457.1| transcription elongation factor NusA [Burkholderia pseudomallei B7210] gi|167894526|ref|ZP_02481928.1| transcription elongation factor NusA [Burkholderia pseudomallei 7894] gi|167902931|ref|ZP_02490136.1| transcription elongation factor NusA [Burkholderia pseudomallei NCTC 13177] gi|167911167|ref|ZP_02498258.1| transcription elongation factor NusA [Burkholderia pseudomallei 112] gi|167919191|ref|ZP_02506282.1| transcription elongation factor NusA [Burkholderia pseudomallei BCC215] gi|217423351|ref|ZP_03454852.1| transcription termination factor NusA [Burkholderia pseudomallei 576] gi|226199712|ref|ZP_03795265.1| transcription termination factor NusA [Burkholderia pseudomallei Pakistan 9] gi|237812041|ref|YP_002896492.1| transcription elongation factor NusA [Burkholderia pseudomallei MSHR346] gi|238562584|ref|ZP_00440122.2| transcription termination factor NusA [Burkholderia mallei GB8 horse 4] gi|242314941|ref|ZP_04813957.1| transcription termination factor NusA [Burkholderia pseudomallei 1106b] gi|254178511|ref|ZP_04885166.1| transcription termination factor NusA [Burkholderia mallei ATCC 10399] gi|254179981|ref|ZP_04886580.1| transcription termination factor NusA [Burkholderia pseudomallei 1655] gi|254188607|ref|ZP_04895118.1| transcription termination factor NusA [Burkholderia pseudomallei Pasteur 52237] gi|254198017|ref|ZP_04904439.1| transcription termination factor NusA [Burkholderia pseudomallei S13] gi|254206031|ref|ZP_04912383.1| transcription termination factor NusA [Burkholderia mallei JHU] gi|254260843|ref|ZP_04951897.1| transcription termination factor NusA [Burkholderia pseudomallei 1710a] gi|254358405|ref|ZP_04974678.1| transcription termination factor NusA [Burkholderia mallei 2002721280] gi|52209947|emb|CAH35919.1| N utilization substance protein A [Burkholderia pseudomallei K96243] gi|52428247|gb|AAU48840.1| N utilization substance protein A [Burkholderia mallei ATCC 23344] gi|76578055|gb|ABA47530.1| N utilization substance protein A [Burkholderia pseudomallei 1710b] gi|121227130|gb|ABM49648.1| transcription termination factor NusA [Burkholderia mallei SAVP1] gi|124292724|gb|ABN01993.1| N utilization substance protein A [Burkholderia mallei NCTC 10229] gi|126218541|gb|ABN82047.1| transcription termination factor NusA [Burkholderia pseudomallei 668] gi|126228646|gb|ABN92186.1| transcription termination factor NusA [Burkholderia pseudomallei 1106a] gi|126242711|gb|ABO05804.1| transcription termination factor NusA [Burkholderia mallei NCTC 10247] gi|134246369|gb|EBA46458.1| transcription termination factor NusA [Burkholderia pseudomallei 305] gi|147753474|gb|EDK60539.1| transcription termination factor NusA [Burkholderia mallei JHU] gi|148027532|gb|EDK85553.1| transcription termination factor NusA [Burkholderia mallei 2002721280] gi|157936286|gb|EDO91956.1| transcription termination factor NusA [Burkholderia pseudomallei Pasteur 52237] gi|160699550|gb|EDP89520.1| transcription termination factor NusA [Burkholderia mallei ATCC 10399] gi|169654758|gb|EDS87451.1| transcription termination factor NusA [Burkholderia pseudomallei S13] gi|184210521|gb|EDU07564.1| transcription termination factor NusA [Burkholderia pseudomallei 1655] gi|217393209|gb|EEC33230.1| transcription termination factor NusA [Burkholderia pseudomallei 576] gi|225928298|gb|EEH24332.1| transcription termination factor NusA [Burkholderia pseudomallei Pakistan 9] gi|237503145|gb|ACQ95463.1| transcription elongation factor NusA [Burkholderia pseudomallei MSHR346] gi|238522259|gb|EEP85704.1| transcription termination factor NusA [Burkholderia mallei GB8 horse 4] gi|242138180|gb|EES24582.1| transcription termination factor NusA [Burkholderia pseudomallei 1106b] gi|243060319|gb|EES42505.1| transcription termination factor NusA [Burkholderia mallei PRL-20] gi|254219532|gb|EET08916.1| transcription termination factor NusA [Burkholderia pseudomallei 1710a] Length = 491 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/467 (43%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELV 468 >gi|237746613|ref|ZP_04577093.1| transcription pausing [Oxalobacter formigenes HOxBLS] gi|229377964|gb|EEO28055.1| transcription pausing [Oxalobacter formigenes HOxBLS] Length = 518 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/467 (43%), Positives = 313/467 (67%), Gaps = 5/467 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LE+LQ+ DA+A EK++D+++VL + ++ A + Y DIRV I+ ++G++ FR Sbjct: 3 LEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDVDIRVAIDRQSGEVETFRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ ++ A+++ P I++G + D + +D GR Q KQ+++Q++R Sbjct: 63 HVVPDEAGLQQPDQEMLFFEAKEQFPDIEVGDYIEDHVESVDLGRRFAQDTKQIVLQRIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV+ Sbjct: 123 DAEREQILQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRIGDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AV++ Sbjct: 183 AYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVYT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 243 ADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + FM Sbjct: 303 DKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKTALEKAELQKLFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VD +A +L+ EGF +EE+A V I+E+ IE FDEET EI+ RAR+ L I Sbjct: 363 EKLDVDSEVADILIEEGFTSLEEIAYVPINEMLDIEAFDEETVNEIRQRARDALITEAIV 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ E L + G+ + LG G+KT+E AG + D+ Sbjct: 423 SEEGM--AGMEEALSGLEGMSRSVAGKLGLAGVKTLERFAGLAYDEF 467 >gi|187923623|ref|YP_001895265.1| transcription elongation factor NusA [Burkholderia phytofirmans PsJN] gi|187714817|gb|ACD16041.1| NusA antitermination factor [Burkholderia phytofirmans PsJN] Length = 491 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 323/467 (69%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV+I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELV 468 >gi|311695959|gb|ADP98832.1| transcription elongation factor NusA [marine bacterium HP15] Length = 497 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/481 (42%), Positives = 319/481 (66%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ +TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFEDEEADIRVSIDRKTGEYETFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ V +++L+ A + DP++ G + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTLQEAEEIDPALKPGDIHEEKIESEAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+ Sbjct: 124 AERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREFLIPRETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 SLLLEIRTDHRGPQLILSRTSPQMLIELFRIEVPEIAEDLIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE ++++++ + F Sbjct: 304 DRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYSRLVEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L + Sbjct: 364 GNLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + +E+L + G+D + L G++TMEDLA SV DLL G E + G Sbjct: 424 SEEALEGAEPAEDLLGMDGMDRSLAFKLAGMGVRTMEDLAEQSVGDLLEIEGMDEERAGQ 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|254297816|ref|ZP_04965269.1| transcription termination factor NusA [Burkholderia pseudomallei 406e] gi|157807196|gb|EDO84366.1| transcription termination factor NusA [Burkholderia pseudomallei 406e] Length = 487 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/466 (43%), Positives = 322/466 (69%), Gaps = 5/466 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR V Sbjct: 1 MLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLV 60 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+A Sbjct: 61 VPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++Y Sbjct: 121 EREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRAY 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + D Sbjct: 181 IAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAYD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 241 KRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 301 HSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMAR 360 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I + Sbjct: 361 LDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIANE 420 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ Sbjct: 421 EKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELV 464 >gi|254490591|ref|ZP_05103777.1| NusA N-terminal domain family [Methylophaga thiooxidans DMS010] gi|224464335|gb|EEF80598.1| NusA N-terminal domain family [Methylophaga thiooxydans DMS010] Length = 505 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 310/473 (65%), Gaps = 6/473 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L + DA++ EK + ++V+ + ++ A R Y D V+I+ TGD FR Sbjct: 2 NNKEILLVVDAMSNEKGVSKEVIFQAIEAALAMATRKRYEMALDAHVQIDRVTGDYETFR 61 Query: 65 LLEVVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 +VE+ +E+ QI+L A + ++GG + +P+ ++FGR+A Q+AKQVI+ Sbjct: 62 QWLIVEDDDEEALESEETQITLSEALKKQDDAEVGGYIREPMESVEFGRIAAQTAKQVIV 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QKVREAER + +++KVG++I GTVKRV+ GNV +DLG N++ + R+E I RE+ R Sbjct: 122 QKVREAERAQVVDMYREKVGQMIHGTVKRVDRGNVTLDLGGNAEAFLPREEMIPRESFRT 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ Y+ ++R E RGPQ+++SR P+ +++LF +EVPEI +G++ +K +RDPG RAK Sbjct: 182 GDRIRGYLKEIRPEGRGPQLIVSRIAPELLIELFTLEVPEISDGMIDIKGAARDPGLRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV + +S IDPVGACVGMRGSRVQAV EL E++DI++W D A F INA+ PA V Sbjct: 242 IAVLAKESRIDPVGACVGMRGSRVQAVTNELGGERVDIILWDEDVARFAINAMAPAEVLS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V QLS AIGR GQNVRLASQLTGW +++++ + + + E Sbjct: 302 IVVDEDAHSMDIAVEDGQLSQAIGRSGQNVRLASQLTGWELNVMSSSDADKKAETEIGEL 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 Q FM+ ++VDE +A +L EGF+ +EE+A V E+ IE FD++ E++ RAR+ L Sbjct: 362 IQDFMKDLDVDEDVALILAQEGFSSLEEVAYVPEQEMLDIEEFDDDIVAELRSRARDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 I ++++ S+EL + GI + + L N + T++DLA +VD+L+ Sbjct: 422 TRAIASEEQLESAEPSQELLDMEGITKDLALTLASNSVTTLDDLADLAVDELV 474 >gi|238897563|ref|YP_002923242.1| transcription pausing; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465320|gb|ACQ67094.1| transcription pausing; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 494 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/478 (42%), Positives = 310/478 (64%), Gaps = 6/478 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++R++IN +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYDQDVEVRIKINRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+ V + T +I+L+ A+ +D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDIVTSPTREITLEAAQFQDSQIQLGDYVEDQIESVIFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ G+I++G VK+ N+ +DLGN ++G+I R++ + REN+R GDR++ + Sbjct: 124 AMLVEQFRQHQGKIVTGVVKKATRENIYLDLGNNTEGIIGREDMLPRENIRTGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDP SRAK+AV S+D Sbjct: 184 YDVRPEARGAQLFISRSRPEMLIELFRIEVPEIGEELIEIKAAARDPASRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDI++W + FVINA+ PA V V +DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPVQFVINAMAPAEVVSVTIDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLAS+L+GW ++++T EE Q + + F+Q + Sbjct: 304 TMDIAVEATHLAQAIGRNGQNVRLASRLSGWELNVMTAEELQSKNQAEVDSIVHTFIQHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 N+D+ A +L+ EG + +EEL CV I E+ IEG DEET ++ RA++ L + L + Sbjct: 364 NIDKEFAEVLIEEGLSSLEELVCVPIEELLEIEGLDEETVNALRDRAKKTL--TTLALAE 421 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 S++L ++P +DSKI L +GI T+EDLA S+DDL G S +K G + Sbjct: 422 NFSGNSPSDDLLNLPNMDSKIAFRLSASGISTLEDLAEQSIDDLADIEGLSNDKAGEL 479 >gi|217970108|ref|YP_002355342.1| transcription elongation factor NusA [Thauera sp. MZ1T] gi|217507435|gb|ACK54446.1| NusA antitermination factor [Thauera sp. MZ1T] Length = 491 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/466 (42%), Positives = 321/466 (68%), Gaps = 4/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--L 65 E+L + DA+A EK++ +D+V S + ++ A + +D+ V I+ ++GD + R L Sbjct: 4 EILLLVDALAREKNVAKDIVFSALETALASATKKRIHDDADVVVSIDRDSGDYTSKRRWL 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + + EEV N ++ + AR+ + IG + + L P+DFGR+ Q+AKQVI+QK+R+A Sbjct: 64 VMLDEEVANDEAEMGIIDARELRADVQIGDYIEEELEPIDFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++ Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRMEAVLPRDQQIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RD G RAK+AV S+D Sbjct: 184 LLRIDRGARGPQLVLSRTAPEFLMKLFELEVPEIEDGLLELKACARDAGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FV+ AL+PA V +V+DE+ Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSQDPAQFVVAALQPAEVVSIVVDEES 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + ++ FM+ Sbjct: 304 HAMDVVVDENNLAIAIGRSGQNVKLASELTGWTINLMSEQESAEKTAQEQQGLRALFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF+ +EE+A V +SE+ IE FDE+T E++ RAR L I + Sbjct: 364 LDVDEEVADILIEEGFSSLEEVAYVPLSEMLEIEAFDEDTVNELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++ + VS++L + G+D + L + GI+T +DLA +VD+L+ Sbjct: 424 EQLEK--VSDDLLGLEGMDKSLAATLAQQGIRTRDDLADLAVDELV 467 >gi|124267111|ref|YP_001021115.1| NusA antitermination factor [Methylibium petroleiphilum PM1] gi|124259886|gb|ABM94880.1| NusA antitermination factor [Methylibium petroleiphilum PM1] Length = 492 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/469 (43%), Positives = 317/469 (67%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR +LL DA+A EKS++RDVV + ++ A++ L+G DIRV ++ +TG+ FR Sbjct: 2 NR-DLLDFVDAIAREKSVERDVVFEAVEAALASASKKLHGGEVDIRVSVDRDTGEYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L ARDR I+ G + + + + GR+ Q+AKQVI+QK Sbjct: 61 RWLVVPDSAGLQNADAEELLTDARDRIEDIEEGDYIEEAIESVSIGRIGAQAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++ +F + +I GTVKR++ G+++V+ G +G ++R E I++ENLR GDR Sbjct: 121 VRDAEREQLLNDFLSRGDKIFVGTVKRLDKGDLVVESGRVEGRLKRSELIAKENLRTGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI +V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAYITEVDTTQRGPQIMLSRSAPGFMVELFRHEVPEIEQGLLEIKSCARDAGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSADPAQFVIGALAPANVQSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I++ EE + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMSAEESQDKQATESESIRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++ ++VD +A +L+AEGF +EE+A V + E+ +E FDE+T E++ RA++ L ++ Sbjct: 361 FVEKLDVDAEVADILIAEGFTSLEEVAYVPLQEMLEMESFDEDTVHELRTRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++K+ VS++L + G+D+++ L E GI T +DLA +VD+L Sbjct: 421 IAQEEKLE--SVSQDLRDLEGLDAELIARLAEGGIHTRDDLADLAVDEL 467 >gi|15599939|ref|NP_253433.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAO1] gi|107103844|ref|ZP_01367762.1| hypothetical protein PaerPA_01004915 [Pseudomonas aeruginosa PACS2] gi|116052892|ref|YP_793209.1| transcription elongation factor NusA [Pseudomonas aeruginosa UCBPP-PA14] gi|152989172|ref|YP_001350787.1| transcription elongation factor NusA [Pseudomonas aeruginosa PA7] gi|218893840|ref|YP_002442709.1| transcription elongation factor NusA [Pseudomonas aeruginosa LESB58] gi|254238519|ref|ZP_04931842.1| N utilization substance protein A [Pseudomonas aeruginosa C3719] gi|254244353|ref|ZP_04937675.1| N utilization substance protein A [Pseudomonas aeruginosa 2192] gi|296391572|ref|ZP_06881047.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAb1] gi|313109726|ref|ZP_07795666.1| N utilization substance protein A [Pseudomonas aeruginosa 39016] gi|9951007|gb|AAG08131.1|AE004888_6 N utilization substance protein A [Pseudomonas aeruginosa PAO1] gi|115588113|gb|ABJ14128.1| N utilization substance protein A [Pseudomonas aeruginosa UCBPP-PA14] gi|126170450|gb|EAZ55961.1| N utilization substance protein A [Pseudomonas aeruginosa C3719] gi|126197731|gb|EAZ61794.1| N utilization substance protein A [Pseudomonas aeruginosa 2192] gi|150964330|gb|ABR86355.1| N utilization substance protein A [Pseudomonas aeruginosa PA7] gi|218774068|emb|CAW29884.1| N utilization substance protein A [Pseudomonas aeruginosa LESB58] gi|310882168|gb|EFQ40762.1| N utilization substance protein A [Pseudomonas aeruginosa 39016] Length = 493 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/480 (42%), Positives = 318/480 (66%), Gaps = 6/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVEINRHNGSYETFRRWH 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ ++ +I+++ +++ P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVADEDYQDPATEITVEDVQEQKPGAKVGEVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++KVGEIISGTVK+V NVIVDLGN ++ ++ RD+ I RE R G RV++ Sbjct: 124 ERAQVVDAYREKVGEIISGTVKKVTRDNVIVDLGNNAEALLARDQIIPRETFRVGTRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI ++ V A +RDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLVLSRTAPEMLIELFRIEVPEIAEQLIDVMAAARDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+ Sbjct: 304 THTMDIAVAEDNLAQAIGRSGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDILQRFVD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I Sbjct: 364 ELDVDEELAQVLVEEGFTTLEEIAYVPMEEMLSIDGFDEDIVNELRSRAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 ++K+ + +E+L S+ G+ ++ + L G+ T EDLA S+DDLL G E + G + Sbjct: 424 EEKLADAQPAEDLLSLDGMSKELALDLALRGVTTREDLAEQSIDDLLDIDGMDEERAGKL 483 >gi|330816693|ref|YP_004360398.1| NusA antitermination factor [Burkholderia gladioli BSR3] gi|327369086|gb|AEA60442.1| NusA antitermination factor [Burkholderia gladioli BSR3] Length = 491 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/467 (43%), Positives = 322/467 (68%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+VL + ++ A++ L+ ++IRV I+ E+G+ +R Sbjct: 4 EVLMLVDALAREKNVDKDIVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETYRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ I++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKAEIEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSDDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRSLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+ + T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHSVATRDDLAELAVDELV 468 >gi|251791036|ref|YP_003005757.1| transcription elongation factor NusA [Dickeya zeae Ech1591] gi|247539657|gb|ACT08278.1| NusA antitermination factor [Dickeya zeae Ech1591] Length = 496 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/478 (42%), Positives = 312/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR + Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATALVEEGFSSLEELAYVPINELQEIDGLDEETIEALRERAKAALTTLALANEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 +E+L ++ G+ ++ L G+ T+EDLA VDDL G E + G + Sbjct: 424 NRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIEGLDEEQAGEL 481 >gi|15602625|ref|NP_245697.1| transcription elongation factor NusA [Pasteurella multocida subsp. multocida str. Pm70] gi|12721058|gb|AAK02844.1| NusA [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/465 (42%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR Sbjct: 4 ELLLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVDEVTNPTKEITLEAAQFDDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI++GTVK+V N+++DLG ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S+D Sbjct: 184 YKVSPESKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA VT +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVTSIVVDEDSH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QLT WT++++T +E + Q + N+ + FM A+ Sbjct: 304 AMDIAVEPANLAQAIGRNGQNVRLATQLTSWTLNVMTTDELNQKHQAEDNKVLKLFMNAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE AH+L+ EGF+ +EELA V +SE+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 EIDEDFAHILIEEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQARAKNAITAAALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ I + L E I T+E+LA VDDL Sbjct: 424 EALKQAHIEDRLLALEGMNRHIALKLAEKQITTLEELAEQGVDDL 468 >gi|167587339|ref|ZP_02379727.1| NusA antitermination factor [Burkholderia ubonensis Bu] Length = 491 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 322/467 (68%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ +++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKGDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ + +L S+ GI ++ L E+G+ T +DLA +VD+L+ Sbjct: 424 EEKVENAAL--DLKSLDGITPELLSKLAEHGVATRDDLAELAVDELV 468 >gi|260914257|ref|ZP_05920730.1| N utilization substance A [Pasteurella dagmatis ATCC 43325] gi|260631890|gb|EEX50068.1| N utilization substance A [Pasteurella dagmatis ATCC 43325] Length = 494 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/465 (41%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEEVTNPTKEITLEAAQFEDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI++GTVK+V N+++DLG ++ V+ R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVMLREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YKVSPENKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDSH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ + FM + Sbjct: 304 SMDIAVESANLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNQKHQAEDNKVLKLFMNTL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE AH+L+ EGF+ +EELA V ++E+ SI+G ++E V E+Q RA+ + + + Sbjct: 364 EIDEEFAHILIEEGFSTLEELAYVSVNELTSIDGLEDEDLVEELQTRAKNAITAAALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ I + L E I T+E+LA VDDL Sbjct: 424 EALKQAHIEDRLLALDGMNRHIALKLAEKNITTLEELAEQGVDDL 468 >gi|146283631|ref|YP_001173784.1| transcription elongation factor NusA [Pseudomonas stutzeri A1501] gi|145571836|gb|ABP80942.1| N utilization substance protein A [Pseudomonas stutzeri A1501] gi|327482026|gb|AEA85336.1| transcription elongation factor NusA [Pseudomonas stutzeri DSM 4166] Length = 493 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/462 (44%), Positives = 311/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + Y D+RVEIN G FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDDVDLRVEINRHNGSYETFRRWT 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E E+ Q++L A++R+P +G V + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDDEHFEDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++D+VGEIISGTVK+V +VIVDLGN ++ ++ R++ I+RE R G RV++ Sbjct: 124 ERAQVVEAYRDRVGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGARVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQFVINAMAPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q++ + + F++ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ IEGFDE+ E++ RA++ L I Sbjct: 364 ELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L ++ G+D ++ V L G+ T EDLA S Sbjct: 424 EEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQS 465 >gi|325921396|ref|ZP_08183253.1| transcription termination factor NusA [Xanthomonas gardneri ATCC 19865] gi|325548154|gb|EGD19151.1| transcription termination factor NusA [Xanthomonas gardneri ATCC 19865] Length = 503 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/472 (43%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G+ +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGNYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQTSARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEIAAILVTEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|113868282|ref|YP_726771.1| transcription elongation factor NusA [Ralstonia eutropha H16] gi|113527058|emb|CAJ93403.1| transcription pausing factor L [Ralstonia eutropha H16] Length = 491 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/502 (41%), Positives = 333/502 (66%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L ARD +PSI++G + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDELGLQEPDKQILLFEARDENPSIELGDFIEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLATELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G +++ +S+I+ AR Sbjct: 472 -------GVSEEEAKSLIMKAR 486 >gi|148361087|ref|YP_001252294.1| N utilization substance protein A [Legionella pneumophila str. Corby] gi|148282860|gb|ABQ56948.1| N utilization substance protein A [Legionella pneumophila str. Corby] Length = 492 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/481 (43%), Positives = 325/481 (67%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+P+TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDPKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEE-LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 K + G ++ L ++ G+ + L GI TMEDLA SVD+L+ G SE K G Sbjct: 424 GKGLS--GTPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIEGISEEKAGA 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|237730089|ref|ZP_04560570.1| transcription elongation factor NusA [Citrobacter sp. 30_2] gi|226908695|gb|EEH94613.1| transcription elongation factor NusA [Citrobacter sp. 30_2] Length = 495 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 314/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIVTGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGFA +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEQTVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D ++ L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGLDREMAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGEL 481 >gi|307129384|ref|YP_003881400.1| transcription termination/antitermination L factor [Dickeya dadantii 3937] gi|306526913|gb|ADM96843.1| transcription termination/antitermination L factor [Dickeya dadantii 3937] Length = 496 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR + Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALANEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 +E+L ++ G+ ++ L G+ T+EDLA VDDL G E + G + Sbjct: 424 NRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIEGLDEAQAGEL 481 >gi|271499173|ref|YP_003332198.1| transcription termination factor NusA [Dickeya dadantii Ech586] gi|270342728|gb|ACZ75493.1| transcription termination factor NusA [Dickeya dadantii Ech586] Length = 496 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALANEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 +E+L ++ G+ ++ L G+ T+EDLA VDDL G +E + G + Sbjct: 424 NRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIEGLNEEQAGEL 481 >gi|156935695|ref|YP_001439611.1| transcription elongation factor NusA [Cronobacter sakazakii ATCC BAA-894] gi|156533949|gb|ABU78775.1| hypothetical protein ESA_03562 [Cronobacter sakazakii ATCC BAA-894] Length = 495 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTREITLEAARYEDPSLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T++DLA VDDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADIEGLTDEKAGEL 481 >gi|56460077|ref|YP_155358.1| transcription elongation factor NusA [Idiomarina loihiensis L2TR] gi|56179087|gb|AAV81809.1| Transcription elongation factor NusA [Idiomarina loihiensis L2TR] Length = 499 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/468 (42%), Positives = 311/468 (66%), Gaps = 5/468 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y ++R++I+ TG+ FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIEVRIDIDRTTGEFDTFRRWL 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +E+ +ISL A+ DPS+ G V + + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTDSGLEHPYREISLSAAQYEDPSVQAGDYVEEQIDSIQFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + E++++VGE++SG VKR +VI+DLGN ++ +I RDE + RE++RPGDR+ Sbjct: 124 EAERAQVVDEYREQVGEMVSGIVKRANREHVILDLGNNAEAIIYRDEMLPRESVRPGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +YDVR E RG Q+ +SRT+P F+++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 184 RGLLYDVRPEARGAQLFVSRTNPNFLLELFRIEVPEIGEEMIELRGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQYVINAMAPAEVASIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIG+ GQNVRLASQLTGWT++++TE+E + + + F Sbjct: 304 EDAHTMDIAVAADNLAQAIGKGGQNVRLASQLTGWTLNVMTEDEFNEKNEAETQRLLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A++LV EGF+ +EE+A V ++E IEG DE+ E++ RAR YL + Sbjct: 364 VSTLDIDEDFANVLVDEGFSSLEEVAYVPVAEFLDIEGMDEDIVEELRSRARAYLTTKAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + + L ++ G++ + L G+ T+E+LA VDDL Sbjct: 424 ATEESLESAEPDDTLLNLEGMERHLAYVLASKGVTTLEELAEQGVDDL 471 >gi|194289950|ref|YP_002005857.1| transcription elongation factor nusa [Cupriavidus taiwanensis LMG 19424] gi|193223785|emb|CAQ69792.1| transcription termination/antitermination L factor [Cupriavidus taiwanensis LMG 19424] Length = 491 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/502 (41%), Positives = 332/502 (66%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+ +PSI++G + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDELGLQEPDKQILLFEAREENPSIELGDYIEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPDFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G +++ +S+I+ AR Sbjct: 472 -------GVSEEEAKSLIMKAR 486 >gi|283788203|ref|YP_003368068.1| transcription elongation protein [Citrobacter rodentium ICC168] gi|282951657|emb|CBG91357.1| transcription elongation protein [Citrobacter rodentium ICC168] Length = 495 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 314/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARFEDESLNLGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ ++ L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGMNRELAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGEL 481 >gi|37528349|ref|NP_931694.1| transcription elongation factor NusA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787787|emb|CAE16902.1| N utilization substance protein A (nusA protein) (L factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 502 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/484 (43%), Positives = 312/484 (64%), Gaps = 11/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ AR +P ID+G D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLEAARFEEPEIDLGSYTEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 304 TMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V I E+ IEG DEET ++ RA+ L Sbjct: 364 DTFTKHLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIEGLDEETIEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 +++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL S+ +G Sbjct: 424 LELAQKESLSDKQPTEELLNLTGMNRTLAFDLAARGICTLEDLAEQGIDDL---SDIEGL 480 Query: 480 NIEK 483 N EK Sbjct: 481 NDEK 484 >gi|66767928|ref|YP_242690.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. 8004] gi|66573260|gb|AAY48670.1| N utilization substance protein A [Xanthomonas campestris pv. campestris str. 8004] Length = 503 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/472 (43%), Positives = 317/472 (67%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G+ FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALVNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|21231945|ref|NP_637862.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991044|ref|YP_001903054.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. B100] gi|21113674|gb|AAM41786.1| N utilization substance protein A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732804|emb|CAP50998.1| N utilization substance (transcription elongation) protein A [Xanthomonas campestris pv. campestris] Length = 503 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/472 (43%), Positives = 317/472 (67%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G+ FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|269961979|ref|ZP_06176334.1| N utilization substance protein A [Vibrio harveyi 1DA3] gi|269833302|gb|EEZ87406.1| N utilization substance protein A [Vibrio harveyi 1DA3] Length = 495 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/482 (42%), Positives = 314/482 (65%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVMDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMT----VADLQKKHAEESQASIENF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + Sbjct: 360 MKYLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGG 479 ++ L +E+L + G++ ++ L G+ T+EDLA +DDL G +E + G Sbjct: 420 AQEESFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|319787428|ref|YP_004146903.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317465940|gb|ADV27672.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 503 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/469 (43%), Positives = 320/469 (68%), Gaps = 5/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFEALEAALASAAKKRYVDQDVVTRVAIDRKDGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +++G + + + +FGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEADGVEVGDYIEEQIENPEFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+++G VKRVE GN+ VDLG N++ I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELVTGVVKRVERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+Y+VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLYEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVAAKSEAEQAVARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF+ VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFSTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNDAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++++ E G +E+L ++ G+D AL +G++T EDL+ + D+++ Sbjct: 424 AVEEQMGEEGPAEDLLALEGMDEDTAFALAAHGVRTSEDLSDLAADEVV 472 >gi|90416134|ref|ZP_01224066.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2207] gi|90331859|gb|EAS47073.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2207] Length = 497 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/467 (42%), Positives = 314/467 (67%), Gaps = 3/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK +D++V+ + ++ A + Y ++IRV I+ ETGD FR + Sbjct: 4 EILMVAEAVSNEKGVDQEVIFQAIEQALSTATKKRYDEGANIRVVIDRETGDYDSFRWWD 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + Q + + A ++DP++ +G + + + FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVADDVMAELGTQFTTEEAHEKDPTLAVGDTFEETVENIAFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ F +++GE+++GTVK+V ++IVD G N++G++ R+E + RE R DR + Sbjct: 124 ERELIISRFVNRIGEMLNGTVKKVTRDHIIVDFGDNAEGLLPREELVGREIFRINDRTRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +R + RGPQ+L+SR + +V+LFH+EVPEI GI+++K +RDPG RAK+AV S Sbjct: 184 ILTSIRDDTRGPQLLVSRAASEMLVQLFHIEVPEISEGIIEIKGAARDPGQRAKIAVKSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ IDPVGACVGMRG+RVQAV +L DE+IDI++W + A VINA+ PA V +V+DED Sbjct: 244 DARIDPVGACVGMRGARVQAVSNDLDDERIDIILWDDNPAQLVINAMAPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E L+ AIG+ GQNVRLAS+LTGWTI+++T ++ +Q++ + M Sbjct: 304 SHSMDVAVSEENLAQAIGKGGQNVRLASELTGWTINVMTMDQAQEKQQEESLNVVENLMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+++DE +A +LV EGF +EE+A V + E+ IEGFDE A E++ RA++ L + + Sbjct: 364 ALDIDEDVAIVLVEEGFTSLEEVAYVPLEEMIDIEGFDEGIATELRARAKDALLTMALAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++++ +E+L ++ G++ + L GI TMEDLA +VDDL+ Sbjct: 424 EEQLANAQPAEDLLTMDGMNDALANTLAGKGIITMEDLAEQAVDDLM 470 >gi|156975664|ref|YP_001446571.1| transcription elongation factor NusA [Vibrio harveyi ATCC BAA-1116] gi|156527258|gb|ABU72344.1| hypothetical protein VIBHAR_03397 [Vibrio harveyi ATCC BAA-1116] Length = 495 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/482 (42%), Positives = 314/482 (65%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMT----VADLQKKHAEESQASIENF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + Sbjct: 360 MKYLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGG 479 ++ L +E+L + G++ ++ L G+ T+EDLA +DDL G +E + G Sbjct: 420 AQEESFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|152972093|ref|YP_001337239.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896676|ref|YP_002921421.1| transcription elongation factor NusA [Klebsiella pneumoniae NTUH-K2044] gi|262042727|ref|ZP_06015881.1| N utilization substance A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997774|ref|ZP_08302913.1| transcription termination factor NusA [Klebsiella sp. MS 92-3] gi|150956942|gb|ABR78972.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549003|dbj|BAH65354.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039952|gb|EEW41069.1| N utilization substance A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538908|gb|EGF64969.1| transcription termination factor NusA [Klebsiella sp. MS 92-3] Length = 495 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 312/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLEAARFEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA VDDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIEGMTDEKAGEL 481 >gi|237748745|ref|ZP_04579225.1| transcription elongation protein [Oxalobacter formigenes OXCC13] gi|229380107|gb|EEO30198.1| transcription elongation protein [Oxalobacter formigenes OXCC13] Length = 519 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 314/467 (67%), Gaps = 5/467 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LE+LQ+ DA+A EK++D+++VL + ++ A + Y +DIRV I+ TG++ FR Sbjct: 3 LEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDADIRVSIDRTTGEVETFRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ ++ A+++ P I++ + D + +D GR Q KQ+++Q++R Sbjct: 63 HVVPDEAGLQQPDQEMLYFEAKEQFPDIEVDDYIEDHIESIDLGRRFAQDTKQIVLQRIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV+ Sbjct: 123 DAEREQVLQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRVGDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AVF+ Sbjct: 183 AYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVFT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE Sbjct: 243 SDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + FM Sbjct: 303 DKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKSALEKAELQKLFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VD+ +A +L+ EGF +EE+A V I E+ IE FDE+T EI+ RAR+ L I Sbjct: 363 ERLDVDQEVADILIEEGFTALEEIAYVPIGEMLEIEAFDEDTVNEIRQRARDAL--ITEA 420 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + G+ EEL ++ G+D ++ LG G+KT++ A + D+ Sbjct: 421 IASEEGMAGMEEELVNLEGMDRQVAGKLGLAGVKTLQRFAELAYDEF 467 >gi|325915554|ref|ZP_08177865.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC 35937] gi|325538270|gb|EGD09955.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC 35937] Length = 503 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/472 (42%), Positives = 317/472 (67%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G+ FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|206577127|ref|YP_002236420.1| transcription termination factor NusA [Klebsiella pneumoniae 342] gi|288933403|ref|YP_003437462.1| NusA antitermination factor [Klebsiella variicola At-22] gi|290511546|ref|ZP_06550915.1| N utilization substance protein A [Klebsiella sp. 1_1_55] gi|206566185|gb|ACI07961.1| transcription termination factor NusA [Klebsiella pneumoniae 342] gi|288888132|gb|ADC56450.1| NusA antitermination factor [Klebsiella variicola At-22] gi|289776539|gb|EFD84538.1| N utilization substance protein A [Klebsiella sp. 1_1_55] Length = 495 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 312/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLEAARYEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA VDDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIEGMTDEKAGEL 481 >gi|166712599|ref|ZP_02243806.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/472 (42%), Positives = 317/472 (67%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQA+ EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAISNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|291613948|ref|YP_003524105.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291584060|gb|ADE11718.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 491 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/490 (41%), Positives = 320/490 (65%), Gaps = 8/490 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L + DA+A EK++D+++V + ++ A + + +D+RV I+ ++G+ FR Sbjct: 4 EVLLLVDALAREKNVDKEIVFGALESALASATKKRFSDEEADVRVSIDRQSGEYESFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V+ E E I L+ A+ RDP I + + +PL +DFGR+ Q+AKQVI QK+R+ Sbjct: 64 QVMDDETFETPELHIKLEEAQKRDPHIQLEEFIEEPLENIDFGRIGAQAAKQVIFQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ ++SGT+KR+E GN IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILADFMERNEHLVSGTIKRIERGNAIVEFGKIEALLPRDQMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V R RGPQ++LSR +F+ KLF +EVPEI G++++ + +RDPGSRAK+AV S Sbjct: 184 YLLRVDRTVRGPQIILSRITTEFLSKLFELEVPEIEEGLLEIVSAARDPGSRAKIAVRSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVGMRGSRVQAV EL E++DI++WS + AT+VINAL PA VT +V+DE+ Sbjct: 244 DQRLDPIGTCVGMRGSRVQAVTNELAGERVDIILWSEEPATYVINALAPAEVTSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+ AIGR GQNVRLAS +TGW I+++T E+ + +++F++ F+ Sbjct: 304 KHSMDVVVEEENLAQAIGRGGQNVRLASDMTGWEINLMTVEQSAEKNEQEFSKIRDLFVA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ +IE FDE T E++ RAR L I Sbjct: 364 KLDVDEEVADILVQEGFNTLEEVAYVPLEEMQAIESFDEATVNELRSRARNALLTAAIVN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ E + E+L I G+D + L G+ T E LA D+L+ E G + E+ Sbjct: 424 EEQV-EHNI-EDLLKIAGMDEETARTLAGKGVGTQEQLADLDGDELV---EMTGMDAERA 478 Query: 485 DGFLSSLGTP 494 + + + P Sbjct: 479 NQLIMTARAP 488 >gi|238761767|ref|ZP_04622741.1| Transcription termination factor NusA [Yersinia kristensenii ATCC 33638] gi|238699881|gb|EEP92624.1| Transcription termination factor NusA [Yersinia kristensenii ATCC 33638] Length = 495 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 312/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L A+ DPSI +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTMPTREITLDAAQYEDPSIQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++GTVK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGHNAEAVINREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|254468012|ref|ZP_05081418.1| transcription termination factor NusA [beta proteobacterium KB13] gi|207086822|gb|EDZ64105.1| transcription termination factor NusA [beta proteobacterium KB13] Length = 485 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/463 (42%), Positives = 317/463 (68%), Gaps = 2/463 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + DA+A+EK++ +++V + + ++ A + Y +DIRV+I+PE+G FR V Sbjct: 1 MLILVDALAHEKNVSKEIVFNALELALASATKKKYPHGTDIRVKIDPESGAYESFRCWTV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEE + + + DR IG V+ + +P +FGR+ Q+AKQVI+QKVREAER+ Sbjct: 61 VEEENLENEEAEILLIDDRAKDKQIGDVIEESIPSEEFGRIGAQAAKQVILQKVREAERE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + +++ G ++R+E GN I+++G + ++ RD+ I +ENLR GDR+++ + Sbjct: 121 QVLNEFLARDEKLVMGQIRRMERGNAIIEIGKLEAILPRDQMIPKENLRVGDRIRAALLK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + RGPQ++LSRT P+F++KLF +EVPEI G++++ + SRDPGSR+K+AV ++D + Sbjct: 181 IETSMRGPQLILSRTSPEFIIKLFEIEVPEIEEGLLEIMSASRDPGSRSKIAVKANDQRL 240 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG CVGMRGSRVQAV TEL E++DIV+WS + A FVIN++ PA V+ +V+DE+ + Sbjct: 241 DPVGTCVGMRGSRVQAVTTELSGERVDIVLWSIEPAQFVINSMAPAEVSSIVVDEEKRSM 300 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 +++V ++QL+LAIGR GQN+RLASQLTGW ++I+TEEE +++++ +Q F++ ++V Sbjct: 301 DIVVDEDQLALAIGRNGQNIRLASQLTGWELNIMTEEESEKKHEEEYSTVSQLFIEKLDV 360 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE +A +LV EGF +EE+A V E+ ++ FDE+T E++ RA+ + I ++K+ Sbjct: 361 DEEVADILVKEGFTSLEEIAYVPTEELNQMDIFDEDTIEELRSRAKAAILTAAIANEEKV 420 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 E E+L ++ G+D L GI +MEDLA +VD+LL Sbjct: 421 PE--AQEDLLTMEGMDQNTANLLASKGIVSMEDLAELAVDELL 461 >gi|260596201|ref|YP_003208772.1| transcription elongation factor NusA [Cronobacter turicensis z3032] gi|260215378|emb|CBA27401.1| Transcription elongation protein nusA [Cronobacter turicensis z3032] Length = 495 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTREITLEAARYEDPSLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ ++G DE T ++ RA+ L + + ++ Sbjct: 364 DIDEEFATILVEEGFSTLEELAYVPMKELLEVDGLDEPTVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T++DLA VDDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADIDGLTDEKAGEL 481 >gi|327396260|dbj|BAK13682.1| transcription elongation protein NusA [Pantoea ananatis AJ13355] Length = 495 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 313/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR E Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L ++ G+D + L G+ T+EDLA VDDL G ++ + G + Sbjct: 424 SLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLTDEQAGAL 481 >gi|289665188|ref|ZP_06486769.1| transcription elongation factor NusA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667364|ref|ZP_06488439.1| transcription elongation factor NusA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/472 (42%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|190575263|ref|YP_001973108.1| transcription elongation factor NusA [Stenotrophomonas maltophilia K279a] gi|190013185|emb|CAQ46818.1| putative N utilization substance protein A [Stenotrophomonas maltophilia K279a] Length = 503 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/472 (43%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++G I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AQDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 +++ + + +++L S+ G+D AL +G++T EDL+ + D+++ + Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDFG 475 >gi|73541717|ref|YP_296237.1| transcription elongation factor NusA [Ralstonia eutropha JMP134] gi|72119130|gb|AAZ61393.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Ralstonia eutropha JMP134] Length = 491 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/467 (43%), Positives = 320/467 (68%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L ARD D S+++G V + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDEQGLQEPDKQILLFEARDDDASLELGDYVEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHCMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDAVRKLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELV 468 >gi|291616009|ref|YP_003518751.1| NusA [Pantoea ananatis LMG 20103] gi|291151039|gb|ADD75623.1| NusA [Pantoea ananatis LMG 20103] Length = 500 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 313/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR E Sbjct: 9 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWE 68 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 69 IVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 128 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 129 AMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 188 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 189 YAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTNDK 248 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 249 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 308 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 309 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTKHL 368 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + + ++ Sbjct: 369 DIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLALAKEE 428 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L ++ G+D + L G+ T+EDLA VDDL G ++ + G + Sbjct: 429 SLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLTDEQAGAL 486 >gi|113460963|ref|YP_719030.1| transcription elongation factor NusA [Haemophilus somnus 129PT] gi|112823006|gb|ABI25095.1| transcription elongation protein, N utilization substance protein A [Haemophilus somnus 129PT] Length = 493 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/465 (43%), Positives = 309/465 (66%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+D Sbjct: 184 YKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM A+ Sbjct: 304 SMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMTAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE AH+LV EGF ++EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 EIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V E+L ++ G+ I L E I T+E+LA VDDL Sbjct: 424 EALKQAHVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDL 468 >gi|269137762|ref|YP_003294462.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267983422|gb|ACY83251.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304557819|gb|ADM40483.1| Transcription termination protein NusA [Edwardsiella tarda FL6-60] Length = 495 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/464 (42%), Positives = 305/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 F++ GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LLV EGF+ +EELA V E+ SI+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATLLVEEGFSTLEELAYVPERELLSIDGLDEETVEALRTRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 424 SLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDL 467 >gi|123440812|ref|YP_001004803.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160078|ref|YP_004296655.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087773|emb|CAL10559.1| N utilization substance protein A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607362|emb|CBY28860.1| transcription termination protein NusA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664308|gb|ADZ40952.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862029|emb|CBX72196.1| transcription elongation protein nusA [Yersinia enterocolitica W22703] Length = 495 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 313/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVINREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|54298757|ref|YP_125126.1| transcription elongation factor NusA [Legionella pneumophila str. Paris] gi|53752542|emb|CAH13974.1| Transcription elongation protein nusA [Legionella pneumophila str. Paris] Length = 492 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 211/481 (43%), Positives = 324/481 (67%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V NVI+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNVIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEE-LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 K + G ++ L ++ G+ + L GI TMEDLA SVD+L+ G SE K G Sbjct: 424 GKGLS--GTPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIEGISEEKAGA 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|91228266|ref|ZP_01262202.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01] gi|254229307|ref|ZP_04922724.1| transcription termination factor NusA domain protein [Vibrio sp. Ex25] gi|262393381|ref|YP_003285235.1| transcription termination protein NusA [Vibrio sp. Ex25] gi|269966859|ref|ZP_06180932.1| N utilization substance protein A [Vibrio alginolyticus 40B] gi|91188143|gb|EAS74445.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01] gi|151938115|gb|EDN56956.1| transcription termination factor NusA domain protein [Vibrio sp. Ex25] gi|262336975|gb|ACY50770.1| transcription termination protein NusA [Vibrio sp. Ex25] gi|269828526|gb|EEZ82787.1| N utilization substance protein A [Vibrio alginolyticus 40B] Length = 495 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/482 (42%), Positives = 317/482 (65%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++VEN T +ISL+ A+ D SI++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDDVENPTKEISLEAAQYEDDSIELGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEDIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMT----VADLQKKHAEESQASIENF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + Sbjct: 360 MKYLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELIEELRGRAKDALTTIAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGG 479 ++ L +E+L ++ G++ ++ L G+ T+EDLA +DDL G +E + G Sbjct: 420 AQEESFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|170717519|ref|YP_001784611.1| transcription elongation factor NusA [Haemophilus somnus 2336] gi|168825648|gb|ACA31019.1| NusA antitermination factor [Haemophilus somnus 2336] Length = 493 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/465 (43%), Positives = 309/465 (66%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+D Sbjct: 184 YKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM A+ Sbjct: 304 SMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMTAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE AH+LV EGF ++EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 EIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V E+L ++ G+ I L E I T+E+LA VDDL Sbjct: 424 EALKQAQVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDL 468 >gi|295097658|emb|CBK86748.1| transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 500 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/483 (42%), Positives = 313/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 ALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGLPGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL G ++ K Sbjct: 424 LAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|296104883|ref|YP_003615029.1| transcription elongation factor NusA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059342|gb|ADF64080.1| transcription elongation factor NusA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 500 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/483 (42%), Positives = 313/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 ALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL G ++ K Sbjct: 424 LAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|261342615|ref|ZP_05970473.1| L factor [Enterobacter cancerogenus ATCC 35316] gi|288315263|gb|EFC54201.1| L factor [Enterobacter cancerogenus ATCC 35316] Length = 500 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/483 (42%), Positives = 313/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 ALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL G ++ K Sbjct: 424 LAQEESLGDNKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|293393154|ref|ZP_06637469.1| N utilization substance A [Serratia odorifera DSM 4582] gi|291424300|gb|EFE97514.1| N utilization substance A [Serratia odorifera DSM 4582] Length = 495 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ DPSI++GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTREITLEAAQYEDPSIELGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGGNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDRH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++PG++ + L G+ T+EDLA VDDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIEGLSDQQAGEL 481 >gi|304396347|ref|ZP_07378228.1| transcription termination factor NusA [Pantoea sp. aB] gi|304355856|gb|EFM20222.1| transcription termination factor NusA [Pantoea sp. aB] Length = 495 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR E Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L ++ G+D + L G+ T+EDLA VDDL G S+ + G + Sbjct: 424 SLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLSDEQAGAL 481 >gi|82778483|ref|YP_404832.1| transcription elongation factor NusA [Shigella dysenteriae Sd197] gi|309785496|ref|ZP_07680127.1| transcription elongation protein nusA [Shigella dysenteriae 1617] gi|81242631|gb|ABB63341.1| transcription pausing [Shigella dysenteriae Sd197] gi|308926616|gb|EFP72092.1| transcription elongation protein nusA [Shigella dysenteriae 1617] Length = 495 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ GID + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGIDRDLTFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|308189112|ref|YP_003933243.1| Transcription elongation protein nusA [Pantoea vagans C9-1] gi|308059622|gb|ADO11794.1| Transcription elongation protein nusA [Pantoea vagans C9-1] Length = 495 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR E Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L ++ G+D + L G+ T+EDLA VDDL G S+ + G + Sbjct: 424 SLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGMSDEQAGAL 481 >gi|242240750|ref|YP_002988931.1| transcription elongation factor NusA [Dickeya dadantii Ech703] gi|242132807|gb|ACS87109.1| NusA antitermination factor [Dickeya dadantii Ech703] Length = 496 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQDIDVRVCIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ +P +D+GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEEPEVDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDVFTRYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATALVEEGFSSLEELAYVPITELQEIDGLDEETIEALRERAKAALTTLALAREE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 +E+L ++ G+ ++ L G+ T+EDLA VDDL G +E + G + Sbjct: 424 NRGAGQPAEDLLNLAGLPREMAFTLAARGVCTLEDLAEQGVDDLTDIDGLNEERAGEL 481 >gi|52842972|ref|YP_096771.1| transcription elongation factor NusA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630083|gb|AAU28824.1| N utilization substance protein A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 492 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/481 (43%), Positives = 324/481 (67%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEE-LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 K + G ++ L ++ G+ + L GI TMEDLA SVD+L+ G SE K G Sbjct: 424 GKGLS--GTPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIEGISEEKAGA 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|170680571|ref|YP_001745443.1| transcription elongation factor NusA [Escherichia coli SMS-3-5] gi|191168053|ref|ZP_03029853.1| transcription termination/antitermination factor NusA [Escherichia coli B7A] gi|193067419|ref|ZP_03048387.1| transcription termination/antitermination factor NusA [Escherichia coli E110019] gi|209920646|ref|YP_002294730.1| transcription elongation factor NusA [Escherichia coli SE11] gi|218701940|ref|YP_002409569.1| transcription elongation factor NusA [Escherichia coli IAI39] gi|218706791|ref|YP_002414310.1| transcription elongation factor NusA [Escherichia coli UMN026] gi|260857298|ref|YP_003231189.1| transcription termination/antitermination L factor NusA [Escherichia coli O26:H11 str. 11368] gi|260869921|ref|YP_003236323.1| transcription termination/antitermination L factor NusA [Escherichia coli O111:H- str. 11128] gi|293406780|ref|ZP_06650706.1| nusA [Escherichia coli FVEC1412] gi|293412544|ref|ZP_06655267.1| nusA [Escherichia coli B354] gi|298382521|ref|ZP_06992118.1| N utilization substance protein A [Escherichia coli FVEC1302] gi|300897933|ref|ZP_07116312.1| transcription termination factor NusA [Escherichia coli MS 198-1] gi|300938079|ref|ZP_07152857.1| transcription termination factor NusA [Escherichia coli MS 21-1] gi|301022024|ref|ZP_07185967.1| transcription termination factor NusA [Escherichia coli MS 69-1] gi|309793747|ref|ZP_07688173.1| transcription termination factor NusA [Escherichia coli MS 145-7] gi|331664783|ref|ZP_08365688.1| L factor [Escherichia coli TA143] gi|170518289|gb|ACB16467.1| transcription termination/antitermination factor NusA [Escherichia coli SMS-3-5] gi|190901922|gb|EDV61671.1| transcription termination/antitermination factor NusA [Escherichia coli B7A] gi|192959376|gb|EDV89811.1| transcription termination/antitermination factor NusA [Escherichia coli E110019] gi|209913905|dbj|BAG78979.1| N utilization substance protein A [Escherichia coli SE11] gi|218371926|emb|CAR19782.1| transcription termination/antitermination L factor [Escherichia coli IAI39] gi|218433888|emb|CAR14805.1| transcription termination/antitermination L factor [Escherichia coli UMN026] gi|257755947|dbj|BAI27449.1| transcription termination/antitermination L factor NusA [Escherichia coli O26:H11 str. 11368] gi|257766277|dbj|BAI37772.1| transcription termination/antitermination L factor NusA [Escherichia coli O111:H- str. 11128] gi|284923193|emb|CBG36287.1| transcription elongation protein [Escherichia coli 042] gi|291426786|gb|EFE99818.1| nusA [Escherichia coli FVEC1412] gi|291469315|gb|EFF11806.1| nusA [Escherichia coli B354] gi|298277661|gb|EFI19177.1| N utilization substance protein A [Escherichia coli FVEC1302] gi|300358363|gb|EFJ74233.1| transcription termination factor NusA [Escherichia coli MS 198-1] gi|300397739|gb|EFJ81277.1| transcription termination factor NusA [Escherichia coli MS 69-1] gi|300456939|gb|EFK20432.1| transcription termination factor NusA [Escherichia coli MS 21-1] gi|308122704|gb|EFO59966.1| transcription termination factor NusA [Escherichia coli MS 145-7] gi|323154383|gb|EFZ40584.1| transcription elongation protein nusA [Escherichia coli EPECa14] gi|323178882|gb|EFZ64458.1| transcription elongation protein nusA [Escherichia coli 1180] gi|323183124|gb|EFZ68522.1| transcription elongation protein nusA [Escherichia coli 1357] gi|324008768|gb|EGB77987.1| transcription termination factor NusA [Escherichia coli MS 57-2] gi|324018307|gb|EGB87526.1| transcription termination factor NusA [Escherichia coli MS 117-3] gi|331058031|gb|EGI30013.1| L factor [Escherichia coli TA143] Length = 495 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ GID + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|256821530|ref|YP_003145493.1| NusA antitermination factor [Kangiella koreensis DSM 16069] gi|256795069|gb|ACV25725.1| NusA antitermination factor [Kangiella koreensis DSM 16069] Length = 497 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/463 (43%), Positives = 308/463 (66%), Gaps = 3/463 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + +V+ + ++ A + +G D+RV+I+ TGD +RL Sbjct: 5 EILLVVEAVSNEKDVQPEVIFGAIEAALATATKKKHGVDIDVRVDIDRHTGDYDTYRLWT 64 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ + +L A+ DP I IG V + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 65 VVADDAVEDPLTETTLSAAQVEDPEIQIGDYVEEQIESIEFGRIAAQTAKQVIVQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + F+D+VG++++G VK+V + +DLG N++ VI+R+E + RE +R GDRV+ Sbjct: 125 ERAKTVEAFRDRVGDLVTGVVKKVTRDYIFIDLGSNAEAVIQREEMMPRETVRTGDRVRG 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y + E RGPQ+ +SRT P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 185 LLYAISTENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDPGSRAKVAVKTN 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV++ + A +VINA+ PA V +V+DED Sbjct: 245 DKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAPAEVVSIVVDED 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++QL+ AIGR GQN+RLAS+LTGW ++++TEE+ + Q + F+ Sbjct: 305 RRSMDIAVNEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQSETESIVSMFVA 364 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V SE+ IEGFDE+ ++ RA++ L I Sbjct: 365 DLGVDEDLADILVQEGFTTLEEVAYVPQSEMLEIEGFDEDLVDALKSRAKDVLLTKAIAN 424 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 ++++ E+ +E+L ++ G+D + L GI TMEDLA SV Sbjct: 425 EEQLEEVEPAEDLLTMDGMDRHLAFVLASKGIVTMEDLAEQSV 467 >gi|254521780|ref|ZP_05133835.1| N utilization substance protein A [Stenotrophomonas sp. SKA14] gi|219719371|gb|EED37896.1| N utilization substance protein A [Stenotrophomonas sp. SKA14] Length = 503 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/472 (43%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++G I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 +++ + + +++L S+ G+D AL +G++T EDL+ + D+++ + Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDFG 475 >gi|218550454|ref|YP_002384245.1| transcription elongation factor NusA [Escherichia fergusonii ATCC 35469] gi|218357995|emb|CAQ90641.1| transcription termination/antitermination L factor [Escherichia fergusonii ATCC 35469] gi|323966351|gb|EGB61785.1| transcription termination protein NusA [Escherichia coli M863] gi|324115225|gb|EGC09189.1| transcription termination protein NusA [Escherichia fergusonii B253] gi|325498752|gb|EGC96611.1| transcription elongation factor NusA [Escherichia fergusonii ECD227] gi|327255185|gb|EGE66785.1| transcription elongation protein nusA [Escherichia coli STEC_7v] Length = 495 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ GID + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|294634514|ref|ZP_06713049.1| L factor [Edwardsiella tarda ATCC 23685] gi|291092028|gb|EFE24589.1| L factor [Edwardsiella tarda ATCC 23685] Length = 495 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR DP+ D+G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTREITLEAARFEDPAFDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 F++ GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LLV EGF+ +EELA V E+ +I+G DEE+ ++ RA+ L + + ++ Sbjct: 364 DIDEEFATLLVEEGFSTLEELAYVPERELLAIDGLDEESVEALRTRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++PG++ + L G+ T+EDLA VDDL G + + G + Sbjct: 424 SLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIEGLNHDSAGEL 481 >gi|296135767|ref|YP_003643009.1| transcription termination factor NusA [Thiomonas intermedia K12] gi|294339930|emb|CAZ88293.1| transcription pausing; L factor [Thiomonas sp. 3As] gi|295795889|gb|ADG30679.1| transcription termination factor NusA [Thiomonas intermedia K12] Length = 492 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/468 (42%), Positives = 313/468 (66%), Gaps = 5/468 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++DRDVV + ++ A + LY +D+RV+I+ TG+ FR Sbjct: 4 EILMLVDALAREKNVDRDVVFGAVEAALASATKRLYEGEADVRVQIDRNTGEYESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I++G + +P+ + FGR+ Q+AKQVI+QK+R+ Sbjct: 64 VVPDEAGLQLPDSEILLFEAREQIPDIEVGDYIEEPIESIAFGRIGAQAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F + +I +G+VKR++ G++I++ G D +RR + I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLARNDKIFNGSVKRLDKGDLIIESGKVDARLRRSDLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I + R RGPQ+ +SRT P+FM++LF +EVPEI G++++K+ +R+PG RAK+AV S Sbjct: 184 VITKIDRTARGPQIEISRTAPEFMIELFRLEVPEIEQGLMEIKSCAREPGVRAKIAVVSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DRRVDPIGTCVGIRGSRVTAVTNELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E L+LAIGR GQNVRLAS+LTGW I+I++ EE ++ + F++ Sbjct: 304 KHAMDVAVDEENLALAIGRTGQNVRLASELTGWKINILSAEESDARNTQETQKMRSLFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+AEGF +EELA V I+E+ IE FDE+T E++ RAR L +I Sbjct: 364 KLDVDQEVADILIAEGFTSLEELAYVPINEMLEIEAFDEDTVNELRERARNALLTQEIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 ++K+ E V L ++ G+ + L E G+ T++DL + D+L G Sbjct: 424 EQKLDE--VDPALKALDGLSADELALLAEAGVLTLDDLGDLATDELTG 469 >gi|332992817|gb|AEF02872.1| transcription elongation factor NusA [Alteromonas sp. SN2] Length = 497 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 303/467 (64%), Gaps = 4/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 4 EILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGDIEVRVSIDRTSGDFDTFRRWL 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +E EN +I+L A+ +P + +G V D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 IIPDDQEQENPFAEITLSAAQVEEPELQLGDYVEDQIESIKFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + E++DKVGE+++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDRV+ Sbjct: 124 AERAQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV EL E++DIV+W +SA FVINA+ PA V +V+DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENSAQFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + F Sbjct: 304 DSHMMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNIFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +LV EGF +EE+A V SE+ +I+G DE+T E++ RAR +L + Sbjct: 364 AGLDVDEEFAAMLVDEGFTTLEEVAYVPASELLAIDGLDEDTVEELRNRARAFLTTRALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + +E L + G+ + L GI +E+LA D++ Sbjct: 424 NEESLEGAEPTEALLGLEGMSKHVAYVLASRGITDLEELAEQGTDEI 470 >gi|296108417|ref|YP_003620118.1| N utilization substance protein A [Legionella pneumophila 2300/99 Alcoy] gi|295650319|gb|ADG26166.1| N utilization substance protein A [Legionella pneumophila 2300/99 Alcoy] Length = 492 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/481 (43%), Positives = 324/481 (67%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTMEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEE-LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 K + G ++ L ++ G+ + L GI TMEDLA SVD+L+ G SE K G Sbjct: 424 GKGLS--GTPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIEGISEEKAGA 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|15803711|ref|NP_289745.1| transcription elongation factor NusA [Escherichia coli O157:H7 EDL933] gi|15833304|ref|NP_312077.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. Sakai] gi|16131061|ref|NP_417638.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. MG1655] gi|24114460|ref|NP_708970.1| transcription elongation factor NusA [Shigella flexneri 2a str. 301] gi|26249753|ref|NP_755793.1| transcription elongation factor NusA [Escherichia coli CFT073] gi|30064509|ref|NP_838680.1| transcription elongation factor NusA [Shigella flexneri 2a str. 2457T] gi|74313706|ref|YP_312125.1| transcription elongation factor NusA [Shigella sonnei Ss046] gi|89109934|ref|AP_003714.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. W3110] gi|91212591|ref|YP_542577.1| transcription elongation factor NusA [Escherichia coli UTI89] gi|117625465|ref|YP_858788.1| transcription elongation factor NusA [Escherichia coli APEC O1] gi|157155683|ref|YP_001464646.1| transcription elongation factor NusA [Escherichia coli E24377A] gi|157162654|ref|YP_001459972.1| transcription elongation factor NusA [Escherichia coli HS] gi|168762136|ref|ZP_02787143.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4501] gi|168786054|ref|ZP_02811061.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC869] gi|168797770|ref|ZP_02822777.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC508] gi|170018579|ref|YP_001723533.1| transcription elongation factor NusA [Escherichia coli ATCC 8739] gi|170082706|ref|YP_001732026.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. DH10B] gi|188492867|ref|ZP_03000137.1| transcription termination/antitermination factor NusA [Escherichia coli 53638] gi|191172236|ref|ZP_03033779.1| transcription termination/antitermination factor NusA [Escherichia coli F11] gi|193062170|ref|ZP_03043266.1| transcription termination/antitermination factor NusA [Escherichia coli E22] gi|194433789|ref|ZP_03066064.1| transcription termination/antitermination factor NusA [Shigella dysenteriae 1012] gi|215488487|ref|YP_002330918.1| transcription elongation factor NusA [Escherichia coli O127:H6 str. E2348/69] gi|217326723|ref|ZP_03442806.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. TW14588] gi|218555741|ref|YP_002388654.1| transcription elongation factor NusA [Escherichia coli IAI1] gi|218560241|ref|YP_002393154.1| transcription elongation factor NusA [Escherichia coli S88] gi|218691461|ref|YP_002399673.1| transcription elongation factor NusA [Escherichia coli ED1a] gi|218696876|ref|YP_002404543.1| transcription elongation factor NusA [Escherichia coli 55989] gi|227887892|ref|ZP_04005697.1| N utilization substance A [Escherichia coli 83972] gi|237706078|ref|ZP_04536559.1| transcription termination/antitermination factor NusA [Escherichia sp. 3_2_53FAA] gi|238902273|ref|YP_002928069.1| transcription termination/antitermination L factor [Escherichia coli BW2952] gi|253771995|ref|YP_003034826.1| transcription elongation factor NusA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038335|ref|ZP_04872393.1| transcription termination/antitermination factor NusA [Escherichia sp. 1_1_43] gi|254163113|ref|YP_003046221.1| transcription elongation factor NusA [Escherichia coli B str. REL606] gi|256018911|ref|ZP_05432776.1| transcription elongation factor NusA [Shigella sp. D9] gi|256024255|ref|ZP_05438120.1| transcription elongation factor NusA [Escherichia sp. 4_1_40B] gi|260845984|ref|YP_003223762.1| transcription termination/antitermination L factor NusA [Escherichia coli O103:H2 str. 12009] gi|261228181|ref|ZP_05942462.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. FRIK2000] gi|261255037|ref|ZP_05947570.1| transcription termination/antitermination L factor NusA [Escherichia coli O157:H7 str. FRIK966] gi|291284545|ref|YP_003501363.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str. CB9615] gi|293416602|ref|ZP_06659241.1| transcription elongation protein nusA [Escherichia coli B185] gi|293449505|ref|ZP_06663926.1| transcription elongation protein nusA [Escherichia coli B088] gi|300817579|ref|ZP_07097795.1| transcription termination factor NusA [Escherichia coli MS 107-1] gi|300823868|ref|ZP_07103992.1| transcription termination factor NusA [Escherichia coli MS 119-7] gi|300904355|ref|ZP_07122208.1| transcription termination factor NusA [Escherichia coli MS 84-1] gi|300918924|ref|ZP_07135483.1| transcription termination factor NusA [Escherichia coli MS 115-1] gi|300926092|ref|ZP_07141910.1| transcription termination factor NusA [Escherichia coli MS 182-1] gi|300929859|ref|ZP_07145305.1| transcription termination factor NusA [Escherichia coli MS 187-1] gi|300948819|ref|ZP_07162887.1| transcription termination factor NusA [Escherichia coli MS 116-1] gi|300955755|ref|ZP_07168100.1| transcription termination factor NusA [Escherichia coli MS 175-1] gi|300977836|ref|ZP_07174076.1| transcription termination factor NusA [Escherichia coli MS 200-1] gi|300990769|ref|ZP_07179341.1| transcription termination factor NusA [Escherichia coli MS 45-1] gi|301025986|ref|ZP_07189468.1| transcription termination factor NusA [Escherichia coli MS 196-1] gi|301047988|ref|ZP_07195030.1| transcription termination factor NusA [Escherichia coli MS 185-1] gi|301301775|ref|ZP_07207909.1| transcription termination factor NusA [Escherichia coli MS 124-1] gi|301326408|ref|ZP_07219762.1| transcription termination factor NusA [Escherichia coli MS 78-1] gi|301644880|ref|ZP_07244852.1| transcription termination factor NusA [Escherichia coli MS 146-1] gi|306816487|ref|ZP_07450619.1| transcription elongation factor NusA [Escherichia coli NC101] gi|307139856|ref|ZP_07499212.1| transcription elongation factor NusA [Escherichia coli H736] gi|307313124|ref|ZP_07592750.1| transcription termination factor NusA [Escherichia coli W] gi|312968492|ref|ZP_07782701.1| transcription elongation protein nusA [Escherichia coli 2362-75] gi|331643869|ref|ZP_08345000.1| L factor [Escherichia coli H736] gi|331648970|ref|ZP_08350058.1| L factor [Escherichia coli M605] gi|331654775|ref|ZP_08355775.1| L factor [Escherichia coli M718] gi|331659458|ref|ZP_08360400.1| L factor [Escherichia coli TA206] gi|331669998|ref|ZP_08370843.1| L factor [Escherichia coli TA271] gi|331674707|ref|ZP_08375466.1| L factor [Escherichia coli TA280] gi|331679250|ref|ZP_08379922.1| L factor [Escherichia coli H591] gi|331684818|ref|ZP_08385410.1| L factor [Escherichia coli H299] gi|332280000|ref|ZP_08392413.1| transcription pausing [Shigella sp. D9] gi|84028773|sp|P0AFF8|NUSA_ECO57 RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028774|sp|P0AFF7|NUSA_ECOL6 RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028775|sp|P0AFF6|NUSA_ECOLI RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028776|sp|P0AFF9|NUSA_SHIFL RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|12517780|gb|AAG58305.1|AE005545_7 transcription pausing; L factor [Escherichia coli O157:H7 str. EDL933] gi|26110181|gb|AAN82367.1|AE016767_127 N utilization substance protein A [Escherichia coli CFT073] gi|606109|gb|AAA57972.1| L factor [Escherichia coli str. K-12 substr. MG1655] gi|1789560|gb|AAC76203.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. MG1655] gi|13363523|dbj|BAB37473.1| transcription termination-antitermination factor NusA [Escherichia coli O157:H7 str. Sakai] gi|24053641|gb|AAN44677.1| transcription pausing; L factor [Shigella flexneri 2a str. 301] gi|30042768|gb|AAP18491.1| transcription pausing; L factor [Shigella flexneri 2a str. 2457T] gi|73857183|gb|AAZ89890.1| transcription pausing; L factor [Shigella sonnei Ss046] gi|85675965|dbj|BAE77215.1| transcription termination/antitermination L factor [Escherichia coli str. K12 substr. W3110] gi|91074165|gb|ABE09046.1| transcription pausing; L factor [Escherichia coli UTI89] gi|115514589|gb|ABJ02664.1| transcription elongation factor NusA [Escherichia coli APEC O1] gi|157068334|gb|ABV07589.1| transcription termination/antitermination factor NusA [Escherichia coli HS] gi|157077713|gb|ABV17421.1| transcription termination/antitermination factor NusA [Escherichia coli E24377A] gi|169753507|gb|ACA76206.1| NusA antitermination factor [Escherichia coli ATCC 8739] gi|169890541|gb|ACB04248.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. DH10B] gi|188488066|gb|EDU63169.1| transcription termination/antitermination factor NusA [Escherichia coli 53638] gi|189367615|gb|EDU86031.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4501] gi|189374081|gb|EDU92497.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC869] gi|189379809|gb|EDU98225.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC508] gi|190907546|gb|EDV67142.1| transcription termination/antitermination factor NusA [Escherichia coli F11] gi|192932390|gb|EDV84988.1| transcription termination/antitermination factor NusA [Escherichia coli E22] gi|194418052|gb|EDX34146.1| transcription termination/antitermination factor NusA [Shigella dysenteriae 1012] gi|209758328|gb|ACI77476.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758330|gb|ACI77477.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758332|gb|ACI77478.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758334|gb|ACI77479.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|215266559|emb|CAS10998.1| transcription termination/antitermination L factor [Escherichia coli O127:H6 str. E2348/69] gi|217319090|gb|EEC27515.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. TW14588] gi|218353608|emb|CAU99800.1| transcription termination/antitermination L factor [Escherichia coli 55989] gi|218362509|emb|CAR00133.1| transcription termination/antitermination L factor [Escherichia coli IAI1] gi|218367010|emb|CAR04781.1| transcription termination/antitermination L factor [Escherichia coli S88] gi|218429025|emb|CAR09972.2| transcription termination/antitermination L factor [Escherichia coli ED1a] gi|222034888|emb|CAP77631.1| Transcription elongation protein nusA [Escherichia coli LF82] gi|226839959|gb|EEH71980.1| transcription termination/antitermination factor NusA [Escherichia sp. 1_1_43] gi|226899118|gb|EEH85377.1| transcription termination/antitermination factor NusA [Escherichia sp. 3_2_53FAA] gi|227835288|gb|EEJ45754.1| N utilization substance A [Escherichia coli 83972] gi|238863681|gb|ACR65679.1| transcription termination/antitermination L factor [Escherichia coli BW2952] gi|242378714|emb|CAQ33504.1| transcription termination/antitermination L factor [Escherichia coli BL21(DE3)] gi|253323039|gb|ACT27641.1| NusA antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975014|gb|ACT40685.1| transcription elongation factor NusA [Escherichia coli B str. REL606] gi|253979170|gb|ACT44840.1| transcription elongation factor NusA [Escherichia coli BL21(DE3)] gi|257761131|dbj|BAI32628.1| transcription termination/antitermination L factor NusA [Escherichia coli O103:H2 str. 12009] gi|260447802|gb|ACX38224.1| NusA antitermination factor [Escherichia coli DH1] gi|281180213|dbj|BAI56543.1| N utilization substance protein A [Escherichia coli SE15] gi|281602553|gb|ADA75537.1| Transcription elongation protein nusA [Shigella flexneri 2002017] gi|290764418|gb|ADD58379.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str. CB9615] gi|291322595|gb|EFE62024.1| transcription elongation protein nusA [Escherichia coli B088] gi|291431958|gb|EFF04941.1| transcription elongation protein nusA [Escherichia coli B185] gi|294490229|gb|ADE88985.1| transcription termination/antitermination factor NusA [Escherichia coli IHE3034] gi|299879881|gb|EFI88092.1| transcription termination factor NusA [Escherichia coli MS 196-1] gi|300300131|gb|EFJ56516.1| transcription termination factor NusA [Escherichia coli MS 185-1] gi|300308213|gb|EFJ62733.1| transcription termination factor NusA [Escherichia coli MS 200-1] gi|300317388|gb|EFJ67172.1| transcription termination factor NusA [Escherichia coli MS 175-1] gi|300403706|gb|EFJ87244.1| transcription termination factor NusA [Escherichia coli MS 84-1] gi|300407077|gb|EFJ90615.1| transcription termination factor NusA [Escherichia coli MS 45-1] gi|300413950|gb|EFJ97260.1| transcription termination factor NusA [Escherichia coli MS 115-1] gi|300417857|gb|EFK01168.1| transcription termination factor NusA [Escherichia coli MS 182-1] gi|300451708|gb|EFK15328.1| transcription termination factor NusA [Escherichia coli MS 116-1] gi|300462221|gb|EFK25714.1| transcription termination factor NusA [Escherichia coli MS 187-1] gi|300523636|gb|EFK44705.1| transcription termination factor NusA [Escherichia coli MS 119-7] gi|300529877|gb|EFK50939.1| transcription termination factor NusA [Escherichia coli MS 107-1] gi|300842756|gb|EFK70516.1| transcription termination factor NusA [Escherichia coli MS 124-1] gi|300846897|gb|EFK74657.1| transcription termination factor NusA [Escherichia coli MS 78-1] gi|301076825|gb|EFK91631.1| transcription termination factor NusA [Escherichia coli MS 146-1] gi|305850052|gb|EFM50511.1| transcription elongation factor NusA [Escherichia coli NC101] gi|306907035|gb|EFN37543.1| transcription termination factor NusA [Escherichia coli W] gi|307555265|gb|ADN48040.1| transcription pausing [Escherichia coli ABU 83972] gi|307625230|gb|ADN69534.1| transcription elongation factor NusA [Escherichia coli UM146] gi|309703597|emb|CBJ02937.1| transcription elongation protein [Escherichia coli ETEC H10407] gi|312286710|gb|EFR14621.1| transcription elongation protein nusA [Escherichia coli 2362-75] gi|312947728|gb|ADR28555.1| transcription elongation factor NusA [Escherichia coli O83:H1 str. NRG 857C] gi|313648589|gb|EFS13031.1| transcription elongation protein nusA [Shigella flexneri 2a str. 2457T] gi|315062477|gb|ADT76804.1| transcription termination/antitermination L factor [Escherichia coli W] gi|315137757|dbj|BAJ44916.1| transcription elongation protein nusA [Escherichia coli DH1] gi|315257095|gb|EFU37063.1| transcription termination factor NusA [Escherichia coli MS 85-1] gi|315297879|gb|EFU57149.1| transcription termination factor NusA [Escherichia coli MS 16-3] gi|315617252|gb|EFU97861.1| transcription elongation protein nusA [Escherichia coli 3431] gi|320181445|gb|EFW56363.1| Transcription termination protein NusA [Shigella boydii ATCC 9905] gi|320189523|gb|EFW64182.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. EC1212] gi|320194655|gb|EFW69285.1| Transcription termination protein NusA [Escherichia coli WV_060327] gi|320202083|gb|EFW76658.1| Transcription termination protein NusA [Escherichia coli EC4100B] gi|320640241|gb|EFX09813.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. G5101] gi|320645538|gb|EFX14547.1| transcription elongation factor NusA [Escherichia coli O157:H- str. 493-89] gi|320650848|gb|EFX19305.1| transcription elongation factor NusA [Escherichia coli O157:H- str. H 2687] gi|320656229|gb|EFX24141.1| transcription elongation factor NusA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661919|gb|EFX29327.1| transcription elongation factor NusA [Escherichia coli O55:H7 str. USDA 5905] gi|320666754|gb|EFX33733.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. LSU-61] gi|323162863|gb|EFZ48698.1| transcription elongation protein nusA [Escherichia coli E128010] gi|323165127|gb|EFZ50917.1| transcription elongation protein nusA [Shigella sonnei 53G] gi|323189208|gb|EFZ74492.1| transcription elongation protein nusA [Escherichia coli RN587/1] gi|323376935|gb|ADX49203.1| NusA antitermination factor [Escherichia coli KO11] gi|323936135|gb|EGB32429.1| transcription termination protein NusA [Escherichia coli E1520] gi|323941729|gb|EGB37908.1| transcription termination protein NusA [Escherichia coli E482] gi|323946975|gb|EGB42991.1| transcription termination protein NusA [Escherichia coli H120] gi|323951311|gb|EGB47186.1| transcription termination protein NusA [Escherichia coli H252] gi|323957682|gb|EGB53396.1| transcription termination protein NusA [Escherichia coli H263] gi|323961059|gb|EGB56674.1| transcription termination protein NusA [Escherichia coli H489] gi|323970266|gb|EGB65537.1| transcription termination protein NusA [Escherichia coli TA007] gi|324012105|gb|EGB81324.1| transcription termination factor NusA [Escherichia coli MS 60-1] gi|324119536|gb|EGC13418.1| transcription termination protein NusA [Escherichia coli E1167] gi|326337871|gb|EGD61705.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. 1125] gi|326347440|gb|EGD71165.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. 1044] gi|330909225|gb|EGH37739.1| transcription termination protein NusA [Escherichia coli AA86] gi|331037340|gb|EGI09564.1| L factor [Escherichia coli H736] gi|331042717|gb|EGI14859.1| L factor [Escherichia coli M605] gi|331048157|gb|EGI20234.1| L factor [Escherichia coli M718] gi|331054040|gb|EGI26069.1| L factor [Escherichia coli TA206] gi|331062911|gb|EGI34825.1| L factor [Escherichia coli TA271] gi|331068146|gb|EGI39542.1| L factor [Escherichia coli TA280] gi|331073315|gb|EGI44638.1| L factor [Escherichia coli H591] gi|331078433|gb|EGI49639.1| L factor [Escherichia coli H299] gi|332086099|gb|EGI91261.1| transcription elongation protein nusA [Shigella boydii 5216-82] gi|332086431|gb|EGI91578.1| transcription elongation protein nusA [Shigella dysenteriae 155-74] gi|332102352|gb|EGJ05698.1| transcription pausing [Shigella sp. D9] gi|332345126|gb|AEE58460.1| transcription elongation protein NusA [Escherichia coli UMNK88] gi|332752329|gb|EGJ82719.1| transcription elongation protein nusA [Shigella flexneri 4343-70] gi|332752856|gb|EGJ83241.1| transcription elongation protein nusA [Shigella flexneri K-671] gi|332754694|gb|EGJ85060.1| transcription elongation protein nusA [Shigella flexneri 2747-71] gi|332765166|gb|EGJ95393.1| transcription termination/antitermination L factor [Shigella flexneri 2930-71] gi|332998811|gb|EGK18407.1| transcription elongation protein nusA [Shigella flexneri VA-6] gi|332999248|gb|EGK18834.1| transcription elongation protein nusA [Shigella flexneri K-272] gi|333014625|gb|EGK33972.1| transcription elongation protein nusA [Shigella flexneri K-304] gi|333014970|gb|EGK34314.1| transcription elongation protein nusA [Shigella flexneri K-227] Length = 495 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|238918423|ref|YP_002931937.1| transcription elongation factor NusA [Edwardsiella ictaluri 93-146] gi|238867991|gb|ACR67702.1| transcription elongation factor NusA, putative [Edwardsiella ictaluri 93-146] Length = 495 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/464 (42%), Positives = 305/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 F++ GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LLV EGF+ +EELA V E+ SI+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEEFATLLVEEGFSSLEELAYVPERELLSIDGLDEDTVEVLRTRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 424 SLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDL 467 >gi|91774422|ref|YP_544178.1| transcription elongation factor NusA [Methylobacillus flagellatus KT] gi|91708409|gb|ABE48337.1| NusA antitermination factor [Methylobacillus flagellatus KT] Length = 488 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/454 (44%), Positives = 313/454 (68%), Gaps = 6/454 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ + V+ + + ++ A + + +D+RVEI+ ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKTVIFTALELALASATKKRFTEDADVRVEIDRDSGEYRSFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE +EN QI++ AR +G + +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 VVEADALENPAAQIAVDDARAE--GFAVGDYIEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ R++ I +ENLR GDRV++Y Sbjct: 122 EREQILDDFLARKEHLVTGVIKRMEKGNAIIEVGRLESVLPREQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ +RDPG R+K+AV S+D Sbjct: 182 LSRIERSGRGPQLILSRVAPEFLIKLFELEVPEIEEGLLEIKSAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS D A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMDPAQFVINAMAPAEVSGIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++VIV +EQL+ AIGR GQNVRLAS+LTGWT++I+TEEE + +++ + Q F++ Sbjct: 302 HSMDVIVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEEEAAKKSEEEHSSILQLFVEK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E++ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFSTLEEIAYVPLAEMSEIEAFDEDTINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTM 459 +K E SE+L + G+D L G+ TM Sbjct: 422 EKAGE--ASEDLLHMEGMDEATARTLAGKGVATM 453 >gi|146313241|ref|YP_001178315.1| transcription elongation factor NusA [Enterobacter sp. 638] gi|145320117|gb|ABP62264.1| NusA antitermination factor [Enterobacter sp. 638] Length = 495 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S ++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARYEDESFNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFRSHEGEIITGVVKKVNRDNIALDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKAEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAAIATFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +DE A +LV EGF+ +EELA V I E+ I+G DE T ++ RA+ L + + ++ Sbjct: 364 EIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEATVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D I L +G+ T+EDLA VDDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGLDRAIAFKLAAHGVCTLEDLAEQGVDDLADIEGLTDEKAGEL 481 >gi|261253851|ref|ZP_05946424.1| transcription termination protein NusA [Vibrio orientalis CIP 102891] gi|260937242|gb|EEX93231.1| transcription termination protein NusA [Vibrio orientalis CIP 102891] Length = 495 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 313/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR E Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEMEIDVRVEIDRKTGEFETFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +ISL+ A+ DP +++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEVVESPTKEISLEAAQYEDPELNVGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ + Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIESFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD---LLGWSENKGGNI 481 + +E+L + G++ ++ L G+ T+EDLA +DD + G +E + G + Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEGIEGLTEERAGEL 481 >gi|168754150|ref|ZP_02779157.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4401] gi|168769587|ref|ZP_02794594.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4486] gi|168773164|ref|ZP_02798171.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4196] gi|168781312|ref|ZP_02806319.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4076] gi|195938389|ref|ZP_03083771.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. EC4024] gi|208806905|ref|ZP_03249242.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4206] gi|208814506|ref|ZP_03255835.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4045] gi|208820220|ref|ZP_03260540.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4042] gi|209398727|ref|YP_002272640.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4115] gi|254795120|ref|YP_003079957.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. TW14359] gi|187770909|gb|EDU34753.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4196] gi|189001070|gb|EDU70056.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4076] gi|189358578|gb|EDU76997.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4401] gi|189361406|gb|EDU79825.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4486] gi|208726706|gb|EDZ76307.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4206] gi|208735783|gb|EDZ84470.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4045] gi|208740343|gb|EDZ88025.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4042] gi|209160127|gb|ACI37560.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4115] gi|209758336|gb|ACI77480.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|254594520|gb|ACT73881.1| transcription termination/antitermination L factor [Escherichia coli O157:H7 str. TW14359] Length = 495 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQVQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|54295603|ref|YP_128018.1| transcription elongation factor NusA [Legionella pneumophila str. Lens] gi|53755435|emb|CAH16931.1| Transcription elongation protein nusA [Legionella pneumophila str. Lens] gi|307611645|emb|CBX01332.1| transcription elongation protein nusA [Legionella pneumophila 130b] Length = 492 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/481 (43%), Positives = 324/481 (67%), Gaps = 9/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVVKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEE-LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 K + G ++ L ++ G+ + L GI TMEDLA SVD+L+ G SE K G Sbjct: 424 GKGLS--GTPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIEGISEEKAGA 481 Query: 481 I 481 + Sbjct: 482 L 482 >gi|315288929|gb|EFU48327.1| transcription termination factor NusA [Escherichia coli MS 110-3] Length = 495 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNCDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|308050585|ref|YP_003914151.1| NusA antitermination factor [Ferrimonas balearica DSM 9799] gi|307632775|gb|ADN77077.1| NusA antitermination factor [Ferrimonas balearica DSM 9799] Length = 500 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/469 (43%), Positives = 313/469 (66%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ TG+ FR E Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEFALATATKKKYELEIDVRVAIDQRTGEFDTFRRWE 63 Query: 68 VVE---EVENYTCQISLKVAR--DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E E+E T Q+ L AR + D +I++G V + + + F R+ Q+AKQVI+QKV Sbjct: 64 VIEDDAEMEVPTRQVFLSSARAMEEDETIEVGDFVEEQIESITFDRITTQTAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +FKDK GE+++G VK+V ++IVDLGN +D ++ R+E + REN RPGDR Sbjct: 124 REAERAQVVEQFKDKEGELVTGVVKKVNRDSIIVDLGNNADAILFREEMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ ++ VR E RG Q+ LSRT P+ +++LF +EVPEI ++++ +RDPGSRAK+AV Sbjct: 184 VRALLHSVRLESRGSQLFLSRTRPEMLIELFRIEVPEIGEEMIEIVGAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV EL E+IDIV+W+ ++A +VINA+ PA V+ +V+ Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWNDNTAQYVINAMAPADVSSIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V K+ L+ AIGR GQNVRLASQ+TGW ++++T E+ Q + + Sbjct: 304 DEDAKSMDVAVEKDSLAQAIGRNGQNVRLASQVTGWELNVMTTEDMQEKHQAESAKLVTQ 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++++++D+ A +LV EGF +EE+A V ++E+ IEG DEET ++ RA+ L Sbjct: 364 FVESLDIDDEFASVLVDEGFTSLEEIAYVPVNELLEIEGLDEETVEALRERAKAALTTRA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ + +E+L ++ G++ + L G+ T+EDLA +DDL Sbjct: 424 LASEEALDGAEPAEDLLNLEGMERHLAYVLASRGVVTLEDLADQGIDDL 472 >gi|78048394|ref|YP_364569.1| transcription elongation factor NusA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294666762|ref|ZP_06731996.1| transcription elongation factor NusA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924690|ref|ZP_08186128.1| transcription termination factor NusA [Xanthomonas perforans 91-118] gi|78036824|emb|CAJ24517.1| N utilization substance (transcription elongation) protein A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292603423|gb|EFF46840.1| transcription elongation factor NusA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544896|gb|EGD16241.1| transcription termination factor NusA [Xanthomonas perforans 91-118] Length = 503 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/472 (42%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|194366589|ref|YP_002029199.1| transcription elongation factor NusA [Stenotrophomonas maltophilia R551-3] gi|194349393|gb|ACF52516.1| NusA antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 503 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/472 (43%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++G I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 +++ + + +++L S+ G+D AL +G++T E+L+ + D+++ + Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEELSDLAADEVMDFG 475 >gi|323979112|gb|EGB74190.1| transcription termination protein NusA [Escherichia coli TW10509] Length = 495 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQPQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ GID + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|238750125|ref|ZP_04611628.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380] gi|238711669|gb|EEQ03884.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380] Length = 495 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 313/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTMPTREITIEAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATILVEEGFSSLEELAYVPVKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|70734336|ref|YP_257976.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf-5] gi|68348635|gb|AAY96241.1| N utilization substance protein A [Pseudomonas fluorescens Pf-5] Length = 493 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/462 (43%), Positives = 308/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE +++ + L AR+ P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEEADLDDPAVETWLSKARETHPDAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|88812961|ref|ZP_01128204.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231] gi|88789739|gb|EAR20863.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231] Length = 500 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/496 (40%), Positives = 321/496 (64%), Gaps = 9/496 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA++ EK + ++V+ + ++ A R + D RV +N TG+ FR Sbjct: 4 EVLLVVDAISNEKGVSKEVIFEAVEAALASATRKRHPEDIDARVAVNRTTGEYETFRRWL 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV++ E+ +I+L AR ++P+I+ G + P+ ++FGR+A Q+AKQVI+QKVRE Sbjct: 64 VVDDAESVQVPQREIALAEARAQEPTIEAGQYIEQPMESVEFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +KD+ GE+++G VKRVE G+V +DLG N++ I R+E I RE +RPGDR++ Sbjct: 124 AERAKVITAYKDRQGELMTGIVKRVERGHVYLDLGGNAEAFIAREEMIPREAVRPGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++ ++ E RGPQ+++SRT P+F+++LF +EVPE+ ++Q+ +RD G RAK+AV + Sbjct: 184 GWLREICTEARGPQLVVSRTAPEFLIELFKLEVPEVGQDLLQLMGAARDAGQRAKIAVRA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D+ IDPVGACVGMRGSRVQAV EL E+IDI++W + A +VINA+ PA V +++DE Sbjct: 244 LDARIDPVGACVGMRGSRVQAVSNELAGERIDIILWDENPAQYVINAMAPAEVESIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V +EQLS AIGR GQNVRLA +LTGW ++++T EE + + +E + F+ Sbjct: 304 DRHSMDIAVSQEQLSQAIGRGGQNVRLAGELTGWELNVMTSEEAQAKSEAEADELIELFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++VDE +A +L EGF+ VEE+A V ++E IE FDE+ ++ RAR+ L ++ Sbjct: 364 SSLDVDEEVAEILAREGFSSVEEIAYVPVAEFLEIEEFDEDIVELLRNRARDALLTRELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + EL ++ G+D + G+ T+EDLA SVD+L+ G E + Sbjct: 424 EVEQDSPAKPTPELLALEGMDEALAWQFAARGVVTVEDLADQSVDELMEIEGMDEQRAAA 483 Query: 481 I--EKFDGFLSSLGTP 494 + + + + + LG P Sbjct: 484 LIMKAREPWFADLGDP 499 >gi|58582842|ref|YP_201858.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624709|ref|YP_452081.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58427436|gb|AAW76473.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368649|dbj|BAE69807.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/472 (42%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + + F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARKLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|167950226|ref|ZP_02537300.1| transcription elongation factor NusA [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589422|gb|ABG77220.1| N utilization substance protein A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 497 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/483 (42%), Positives = 315/483 (65%), Gaps = 11/483 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK +++ ++ + ++ A R G +RVEI+ +GD FR E Sbjct: 4 EILLVVDAVSNEKGVEKVIIFEAIEAALASATRKKNGDDILVRVEIDRTSGDYESFRRWE 63 Query: 68 VVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE E + QI A+++ P I IG + + + ++FGR+A Q+AKQVI+QKV Sbjct: 64 VVEDYSSDEPDAPLRQIIFDAAKEQQPDIQIGDFIEEEIDSIEFGRIAAQAAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++D+ GE+++G VKRV+ GNV +DLG N++ I R+ I +E +R GDR Sbjct: 124 REAERAKVVAAYEDRKGELVTGVVKRVDRGNVFLDLGGNAEAFIGREHMIPKEAVRVGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+Y++R E RGPQ+ +SRT P+ +++LF +EVPE+ G+++++ +RD G RAK+AV Sbjct: 184 IRGYLYEIRSEVRGPQLFVSRTMPELLIELFKLEVPEVGEGLIEIRGAARDAGLRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + DS IDPVGACVGMRGSRVQAV EL E++DI++W+ + A FVI+A+ PA V +V+ Sbjct: 244 KALDSRIDPVGACVGMRGSRVQAVSNELNGERVDIILWNDNPAQFVIDAMSPADVVSIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V +E LS AIGR GQNVRLASQLTGW ++++ E + + ++ + Sbjct: 304 DEDRHAMDVAVSEENLSQAIGRGGQNVRLASQLTGWELNVMDEAQAAEKSDQESRGFIEA 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ + VDE +A +LV EGF V+E+A V I E+ IE FD++ E++ RA++ L Sbjct: 364 FMEHLGVDEDVATILVQEGFTSVDEVAYVPIEEMLGIEEFDDDLVDELRNRAKDVLLTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 I ++ E +E+L ++ G+D + L +GI TMEDLA SVDDL+ G E + Sbjct: 424 IAKEEAFAE--PAEDLLTMDGMDKDLAYLLASHGIATMEDLAEQSVDDLMDVEGMDEERA 481 Query: 479 GNI 481 G + Sbjct: 482 GKL 484 >gi|220934178|ref|YP_002513077.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219995488|gb|ACL72090.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 501 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 216/485 (44%), Positives = 315/485 (64%), Gaps = 15/485 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK ++++V+ + ++ A R +G D+RV I+ ETGD FR Sbjct: 4 EILMVVDAVSNEKGVEKEVIFEAIEAALGSATRKKHGGEIDVRVSIHRETGDYETFRRWL 63 Query: 68 VVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+ E E+ Q L A P I +G + +P+ +DFGR+A Q+AKQVI+QKVR Sbjct: 64 VVDDEDPEFESPERQKLLSYAHQTHPDIQVGEYIEEPMESVDFGRIAAQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + EF+ +VGE++ G VKR E V +DLG N++ I R+E I RE +RP DR+ Sbjct: 124 EAERAKVVEEFRHRVGELVMGVVKRTERSGVFLDLGGNAEAFIPREEMIPRETVRPNDRL 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SRT P+F++++F +EVPE+ G++ + +RDPG RAK+AV Sbjct: 184 RGYLKEVRSEPRGPQLFVSRTAPEFLIEMFKLEVPEVGQGLIDIMGAARDPGLRAKIAVR 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+DS +DPVGACVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V+D Sbjct: 244 SNDSRLDPVGACVGMRGSRVQSVSNELAGERVDIILWDDNPAQFVINAMSPAEVLSIVMD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +E+LS AIGR GQN+RLASQLTGW ++++ E + + + + E + F Sbjct: 304 EDRHSMDIAVAEEKLSQAIGRGGQNIRLASQLTGWELNVMNEAQAAEKSEAEAAELQRMF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE +A +LV EGF+ +EE+A V SEI IE FDEE E++ RAR+ L + Sbjct: 364 MENLDVDEEVAAILVQEGFSSIEEVAYVPTSEIMQIEEFDEEIVEELRARARDAL----L 419 Query: 423 TLQKKIRELG---VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 T E G +E+L ++ G+D + L GI TMEDLA +VDDL+ G Sbjct: 420 TKAIATEEQGGGEPAEDLLNMEGMDRDLAFKLAAKGICTMEDLAEQAVDDLVEISGLDAE 479 Query: 477 KGGNI 481 K G + Sbjct: 480 KAGEL 484 >gi|21243417|ref|NP_642999.1| transcription elongation factor NusA [Xanthomonas axonopodis pv. citri str. 306] gi|21108968|gb|AAM37535.1| N utilization substance protein A [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/472 (42%), Positives = 316/472 (66%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFVSRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFG 475 >gi|283836285|ref|ZP_06356026.1| L factor [Citrobacter youngae ATCC 29220] gi|291067648|gb|EFE05757.1| L factor [Citrobacter youngae ATCC 29220] Length = 500 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/483 (41%), Positives = 313/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + ++ + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K Sbjct: 424 LAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|170765858|ref|ZP_02900669.1| transcription termination/antitermination factor NusA [Escherichia albertii TW07627] gi|170125004|gb|EDS93935.1| transcription termination/antitermination factor NusA [Escherichia albertii TW07627] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTRYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGMDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|323491074|ref|ZP_08096266.1| transcription elongation factor NusA [Vibrio brasiliensis LMG 20546] gi|323314738|gb|EGA67810.1| transcription elongation factor NusA [Vibrio brasiliensis LMG 20546] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIEGFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 + +E+L + G++ ++ L G+ T+EDLA +DDL G +E + G + Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAGEL 481 >gi|260775410|ref|ZP_05884307.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC BAA-450] gi|260608591|gb|EEX34756.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC BAA-450] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/466 (42%), Positives = 310/466 (66%), Gaps = 1/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKGVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ T +ISL+ A+ D +I+IG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVESPTKEISLEAAQFDDETIEIGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETIVLDLGNNAEAVILRDDQLPRENHRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YRVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA++ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSSLEEVAYVPVNELLEVDGLDEDLVEELRNRAKDALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEG 469 >gi|258624683|ref|ZP_05719617.1| N utilization substance protein A [Vibrio mimicus VM603] gi|258582970|gb|EEW07785.1| N utilization substance protein A [Vibrio mimicus VM603] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 312/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLVELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|253991503|ref|YP_003042859.1| transcription elongation factor NusA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638381|emb|CAR67003.1| n utilization substance protein a (nusa protein) (l factor) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782953|emb|CAQ86118.1| n utilization substance protein a (nusa protein) (l factor) [Photorhabdus asymbiotica] Length = 502 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/485 (42%), Positives = 311/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ AR +P I +G D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLEAARFEEPEITLGSYTEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T +E Q + + Sbjct: 304 TMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELQAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L Sbjct: 364 DIFTKHLDIDEEFATVLVEEGFSTLEELAYVPINELLEIEGLDEETIEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 +++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL G ++ Sbjct: 424 LELAQKESLSDKQPTEELLNLTGMNRTLAFDLAACGICTLEDLAEQGIDDLSDIEGLNDE 483 Query: 477 KGGNI 481 K G + Sbjct: 484 KAGEL 488 >gi|110807038|ref|YP_690558.1| transcription elongation factor NusA [Shigella flexneri 5 str. 8401] gi|110616586|gb|ABF05253.1| transcription elongation factor NusA [Shigella flexneri 5 str. 8401] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVIFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|85058354|ref|YP_454056.1| transcription elongation factor NusA [Sodalis glossinidius str. 'morsitans'] gi|84778874|dbj|BAE73651.1| transcription pausing L factor [Sodalis glossinidius str. 'morsitans'] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/479 (43%), Positives = 311/479 (64%), Gaps = 6/479 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIEVRVSIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L A+ DP+ IGG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLDAAQFDDPTAQIGGYIEDEIESVVFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFRSHEGEIVTGVVKKVNRDSISLDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDIFTRNL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L + + Q+ Sbjct: 364 DIDEEFATVLVEEGFSSLEELAYVPINELLEIEGLDEETVEALRERAKNALTTLALA-QE 422 Query: 427 KIRELGV-SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + R GV +E+L +P ++ + L G+ T+EDLA VDDL G S K G + Sbjct: 423 ENRGAGVPAEDLLGLPELERDMAFKLAARGVCTLEDLAEQGVDDLTDIEGLSSEKAGEL 481 >gi|317493625|ref|ZP_07952046.1| transcription termination factor NusA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918568|gb|EFV39906.1| transcription termination factor NusA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLDAAQFEDPALQLGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 F+ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFRQHQGEIVTGVVKKVSRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LLV EGF+ +EELA V E+ +I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATLLVEEGFSTLEELAYVPEQELLAIDGLDEDTVDALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +E+L ++ G+D I + G+ T+EDLA +DDL G + K G + Sbjct: 424 SLGDQKPAEDLLALEGLDRGIAFKMAARGVCTLEDLAEQGIDDLADIEGLNSEKAGEL 481 >gi|304310506|ref|YP_003810104.1| N utilization substance protein A [gamma proteobacterium HdN1] gi|301796239|emb|CBL44447.1| N utilization substance protein A [gamma proteobacterium HdN1] Length = 494 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/468 (43%), Positives = 311/468 (66%), Gaps = 4/468 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+L + + V+ EK + RDV+ + ++ A + + +D+RV IN TG +R Sbjct: 4 EILLVVETVSNEKGVPRDVIFEAVETALATATKKRFPNEDADVRVSINRTTGAYDTWRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV E+ E ++L A D D IG + + +P +DFGR+A Q+AKQVI+QKVRE Sbjct: 64 TVVLDEDFEFPGRHMTLDEAHDHDTKYKIGDIYEEKIPSIDFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + F DK+G +++G VK+V NVI+DLG N++ ++ R++ I RE LR DRV+ Sbjct: 124 AERAQIADAFSDKIGHLVNGVVKKVTRDNVILDLGGNAEALLPREDLIGRETLRVNDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++ + +E RG Q+ +SR P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV + Sbjct: 184 GVLFSINKENRGAQLYVSRARPEMLIELFKIEVPEIGEDIIEIKAAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A FVINA+ PA V +V+DE Sbjct: 244 NDQRIDPVGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQFVINAMSPAEVVSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +++ V +EQL+LAIGR GQN+RLAS+L+GW ++++T ++ ++++ + FM Sbjct: 304 ESHSMDIAVEEEQLALAIGRGGQNIRLASELSGWELNVMTVKDAEAKQRQESESYLKVFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + VDE +A +LV EGFA VEE+A V E+ SIEGFDE+ E++ RA+ L + Sbjct: 364 DELGVDEELAQVLVDEGFASVEEVAYVPKEEMLSIEGFDEDLVDELRSRAKNALLTRALV 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++ + +++L S+ G+D ++ +AL + GI TMEDLA +VDDLL Sbjct: 424 DEEQNQGGSPADDLLSMEGMDKELALALAKKGICTMEDLAEQAVDDLL 471 >gi|165976050|ref|YP_001651643.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149948|ref|YP_001968473.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249647|ref|ZP_07335852.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253712|ref|ZP_07339849.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247608|ref|ZP_07529651.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249837|ref|ZP_07531813.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252189|ref|ZP_07534087.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263276|ref|ZP_07544894.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876151|gb|ABY69199.1| transcription termination-antitermination factor, N utilization substance protein A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915079|gb|ACE61331.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647437|gb|EFL77656.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651459|gb|EFL81610.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855878|gb|EFM88038.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858139|gb|EFM90219.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860333|gb|EFM92348.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871338|gb|EFN03064.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 493 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/465 (41%), Positives = 307/465 (66%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G+D I L E GI T+E+LA + DDL Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDL 468 >gi|194438826|ref|ZP_03070912.1| transcription termination/antitermination factor NusA [Escherichia coli 101-1] gi|194422298|gb|EDX38299.1| transcription termination/antitermination factor NusA [Escherichia coli 101-1] Length = 495 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ V TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQTVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|285017807|ref|YP_003375518.1| transcription elongation protein nusa [Xanthomonas albilineans GPE PC73] gi|283473025|emb|CBA15530.1| probable transcription elongation protein nusa [Xanthomonas albilineans] Length = 503 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/469 (43%), Positives = 311/469 (66%), Gaps = 5/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKEGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+++G VKR E GN+ VDLG N++ I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELVTGVVKRAERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Q F Sbjct: 304 EEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQAVARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LVAEGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAAILVAEGFNSVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ + +L S+PG+D AL +G++T EDL+ + D++L Sbjct: 424 AAEESDDGGVPAADLLSLPGMDEATAYALAGHGVRTSEDLSDLAADEIL 472 >gi|30248764|ref|NP_840834.1| transcription elongation factor NusA [Nitrosomonas europaea ATCC 19718] gi|30180359|emb|CAD84671.1| S1 RNA binding domain:KH domain:Type 1 KH domain [Nitrosomonas europaea ATCC 19718] Length = 490 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/466 (43%), Positives = 313/466 (67%), Gaps = 4/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG FR Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHTRDDIDVRVSIDRDTGGFHCFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V + VE+ QI++ A R+P G + D + + F R+ Q+AKQVI QK+R+A Sbjct: 64 IVADDPVEHPERQITVSEAVGRNPQAVPGEYIEDLMEDVTFDRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++ G +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y Sbjct: 124 EREQNLNDFLDRGEYLVYGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P F+ KLF +EVPEI GI+++KA +RDPGSRAK+AV S+D Sbjct: 184 LLRIDRSVRGPQLVLSRTSPAFLAKLFELEVPEIEEGILEIKAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DP+G CVGMRGSRVQAV +EL E++DI+ WS D ATFV+NAL PA+++ +V+DE+ Sbjct: 244 SRVDPIGTCVGMRGSRVQAVTSELAGERVDIIQWSDDQATFVVNALAPAVISSIVVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V +E L+ AIGR GQNVRLAS+LTGW ++I+TEEE +++ + FM+ Sbjct: 304 HCMDIVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTEEESQEKTEEEAASICELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I + Sbjct: 364 LDVDEDVGRILVEEGFSTLEEVAYIPIEEMLEIQEFDRETIEELRNRARNALLTDAIATE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +KI SE L ++ G+D ++ L E GI T E+LA + DDL+ Sbjct: 424 EKIGH--ASEALLALEGMDIELVRELAEKGISTQEELADLAADDLV 467 >gi|152980158|ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille] gi|151280235|gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille] Length = 519 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/466 (43%), Positives = 309/466 (66%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ ETG+ FR Sbjct: 4 EILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFRRWH 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + +I A+++ I++ + +P+ +DFGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++ Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ E L ++ G+D + LG GIKT+ + + D+ Sbjct: 424 EEGLE--GMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEF 467 >gi|32033691|ref|ZP_00133986.1| COG0195: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208120|ref|YP_001053345.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae L20] gi|126096912|gb|ABN73740.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 493 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/465 (41%), Positives = 306/465 (65%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G+D I L E GI T+E+LA + DDL Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDL 468 >gi|148976708|ref|ZP_01813395.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3] gi|145964059|gb|EDK29317.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3] Length = 495 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/466 (42%), Positives = 309/466 (66%), Gaps = 1/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TGD FR E Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGDFETFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE VEN T +ISL+ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEVVENPTKEISLEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +I+DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++D Sbjct: 184 YAVKPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAVASIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 424 TFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEG 469 >gi|82545591|ref|YP_409538.1| transcription elongation factor NusA [Shigella boydii Sb227] gi|187731710|ref|YP_001881914.1| transcription elongation factor NusA [Shigella boydii CDC 3083-94] gi|81247002|gb|ABB67710.1| NusA [Shigella boydii Sb227] gi|187428702|gb|ACD07976.1| transcription termination/antitermination factor NusA [Shigella boydii CDC 3083-94] gi|320175533|gb|EFW50629.1| Transcription termination protein NusA [Shigella dysenteriae CDC 74-1112] gi|320186658|gb|EFW61382.1| Transcription termination protein NusA [Shigella flexneri CDC 796-83] gi|332090718|gb|EGI95812.1| transcription elongation protein nusA [Shigella boydii 3594-74] Length = 495 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ ++LGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ GID + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGVTDEKAGAL 481 >gi|311277858|ref|YP_003940089.1| NusA antitermination factor [Enterobacter cloacae SCF1] gi|308747053|gb|ADO46805.1| NusA antitermination factor [Enterobacter cloacae SCF1] Length = 500 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/469 (42%), Positives = 307/469 (65%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGMVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ + +++L ++ G+D + L G+ T+EDLA VDDL Sbjct: 424 LAQEESLGNNKPADDLLNLEGLDRAMAFKLAARGVCTLEDLAEQGVDDL 472 >gi|238787593|ref|ZP_04631391.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC 33641] gi|238724380|gb|EEQ16022.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC 33641] Length = 495 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EV T +I++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVNEVTMPTREITIDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|261212247|ref|ZP_05926533.1| transcription termination protein NusA [Vibrio sp. RC341] gi|260838855|gb|EEX65506.1| transcription termination protein NusA [Vibrio sp. RC341] Length = 495 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAANFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLTELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|52425500|ref|YP_088637.1| transcription elongation factor NusA [Mannheimia succiniciproducens MBEL55E] gi|52307552|gb|AAU38052.1| NusA protein [Mannheimia succiniciproducens MBEL55E] Length = 501 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/471 (42%), Positives = 308/471 (65%), Gaps = 8/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVAINQKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV N T +I+L+ A+ DP I +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVDEVVNPTKEITLEAAQFEDPDIQLGDYVEDQIDSVAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GN------SDGVIRRDETISRENLRPGD 180 ++ +F+ + G+I++GTVK+V ++I+DL GN ++ VI R++ + REN RPGD Sbjct: 124 NKVVEQFRSEEGKIVTGTVKKVTRDSIILDLTGNKEDPAKAEAVITREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +Y V E +G Q+ ++R P + +LF +EVPEI ++++K SRD G RAK+A Sbjct: 184 RVRGVLYKVNPESKGAQLFVTRAKPVMLEELFRLEVPEIGEELIEIKGASRDAGLRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V +V Sbjct: 244 VKSNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVNSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E L+ AIGR GQNVRLA+QLTGWT++++T EE Q + N+ Sbjct: 304 VDEDNHSMDIAVEQENLAQAIGRNGQNVRLATQLTGWTLNVMTTEELQQKHQAEDNKVLN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEG 419 FM ++ +DE A LL+ EGF+ +EELA V +SE+ +I+G ++E V E+Q RA++ L Sbjct: 364 LFMTSLELDEDFAQLLIDEGFSSLEELAYVPVSELTAIDGLEDEDLVEELQNRAKDALTA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ V + L ++ G++ I L E IKT+E+LA VDDL Sbjct: 424 KAVAEEEALKQAEVEDRLLNLEGMERHIAFRLAEKNIKTLEELAEQGVDDL 474 >gi|238783516|ref|ZP_04627538.1| Transcription termination factor NusA [Yersinia bercovieri ATCC 43970] gi|238797553|ref|ZP_04641050.1| Transcription termination factor NusA [Yersinia mollaretii ATCC 43969] gi|238715571|gb|EEQ07561.1| Transcription termination factor NusA [Yersinia bercovieri ATCC 43970] gi|238718550|gb|EEQ10369.1| Transcription termination factor NusA [Yersinia mollaretii ATCC 43969] Length = 495 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVNEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDRH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|262274884|ref|ZP_06052695.1| transcription termination protein NusA [Grimontia hollisae CIP 101886] gi|262221447|gb|EEY72761.1| transcription termination protein NusA [Grimontia hollisae CIP 101886] Length = 495 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATATKKKYDADIDVRVAIDRKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTLPTREITLEAAQFDDETLELGSYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F + GE+I+G VK+V VIVDLGN ++ I+RD+ + REN RPGDRV+ + Sbjct: 124 AQVVEQFMENEGELITGVVKKVNRDVVIVDLGNNAEAAIQRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI +++V +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGFQLFMTRSKPEMLIELFRIEVPEIGEEMIEVMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ Q++ + + F + + Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVQDLQKKHQEEAGQSIELFSKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF +EE+A V +E+ I G DE+T E++ RA+E L I + ++ Sbjct: 364 DIDEDFAAVLVEEGFTTLEEVAYVPAAELLEINGLDEDTVEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L + G++ + L GI T+EDLA DDLL G E K G + Sbjct: 424 ILEGAEPAEDLLGLEGLERDLAFRLAAKGICTLEDLADQGTDDLLDIEGMDEVKAGEL 481 >gi|157148740|ref|YP_001456059.1| transcription elongation factor NusA [Citrobacter koseri ATCC BAA-895] gi|157085945|gb|ABV15623.1| hypothetical protein CKO_04570 [Citrobacter koseri ATCC BAA-895] Length = 495 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTLPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + S++L ++ G+ + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPSDDLLNLEGLGRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGEL 481 >gi|241764251|ref|ZP_04762282.1| NusA antitermination factor [Acidovorax delafieldii 2AN] gi|241366374|gb|EER60896.1| NusA antitermination factor [Acidovorax delafieldii 2AN] Length = 494 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 317/469 (67%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSVDRDSGNYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L AR+R P +++G + + + + GR+ +AKQVI+QK Sbjct: 61 RWLVVPDDAGLQNPDAEELLMDARERVPDVEVGEYIEEAIESVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRSGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDTARKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA +L++EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIADILISEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + E VS++L + G+ ++ L ENG+ T +DLA ++D+L Sbjct: 421 IAREESVGE--VSQDLRDLEGLTPELIAKLAENGVHTRDDLADLAIDEL 467 >gi|254507512|ref|ZP_05119646.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16] gi|219549582|gb|EED26573.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16] Length = 495 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/482 (41%), Positives = 312/482 (64%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ----FF 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMT----VADLQKKHAEESQAAIDAF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + Sbjct: 360 MKHLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGG 479 ++ + +E+L + G++ ++ L G+ T+EDLA +DDL G +E + G Sbjct: 420 AQEESFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|134095611|ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans] gi|133739514|emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Herminiimonas arsenicoxydans] Length = 519 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/466 (43%), Positives = 310/466 (66%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+LQ+ DA+A EK++D D+V + ++ +A + Y DIRV I+ +TG+ FR Sbjct: 4 EILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFRRWH 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + +I A+++ I++ + +P+ ++FGR Q KQV++Q++R+ Sbjct: 64 VVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++ Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRILFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V I E+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ E L ++ G+D + LG G+KT++ AG + D+ Sbjct: 424 EEGME--GMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEF 467 >gi|161506147|ref|YP_001573259.1| transcription elongation factor NusA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867494|gb|ABX24117.1| hypothetical protein SARI_04337 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 500 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/483 (40%), Positives = 313/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAETHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKHLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K Sbjct: 424 QAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|119774097|ref|YP_926837.1| transcription elongation factor NusA [Shewanella amazonensis SB2B] gi|119766597|gb|ABL99167.1| NusA antitermination factor [Shewanella amazonensis SB2B] Length = 499 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/467 (42%), Positives = 308/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F DK GEII+G VK+ +VIVDLGN +DGV+ +++ I+RE+ RPGDRV Sbjct: 124 EAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P+ +++LF +EVPEI + ++QV +RDPGSRAK+AV Sbjct: 184 RALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T + + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVALF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M +++VDE A +L EGF +EE+A V ++E+ +I+GFDE+ ++ RA+ + + Sbjct: 364 MASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + SEEL ++ G+D + L G+ T+EDLA +DD Sbjct: 424 ASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDD 470 >gi|239997162|ref|ZP_04717686.1| transcription elongation factor NusA [Alteromonas macleodii ATCC 27126] Length = 498 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 302/467 (64%), Gaps = 4/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 4 EILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRRWL 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ +E EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + E++DKVGE+++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDRV+ Sbjct: 124 AERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + F Sbjct: 304 DSNSMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLDLFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A +LV EGF +EE+A V SE+ ++EG DEE E++ RAR +L + Sbjct: 364 AGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEEMVEELRNRARAFLTTRALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + +E L ++ G+ + L G+ +E+LA DD+ Sbjct: 424 NEESLEGAEPTEALLNLEGMSKHVAYVLASRGVTDLEELAEQGTDDI 470 >gi|221134838|ref|ZP_03561141.1| transcription elongation factor NusA [Glaciecola sp. HTCC2999] Length = 494 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/481 (42%), Positives = 310/481 (64%), Gaps = 10/481 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + ++ + + ++ A + ++RV I+ TGD FR Sbjct: 4 EILLVAEAVSNEKQVPKEKIFEALEFALSTATKKKNEGEIEVRVAIDRATGDFDTFRQWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ + EN ++++ A+ +P I IG V + + + F R+ Q+AKQVI QKVRE Sbjct: 64 VIPDDQVQENPYAEMTISAAQIDEPEIQIGDFVEEQIESIKFDRITTQTAKQVIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + E++D+VGE+++GTVK+V NVI+DLGN ++GVI RD+ + REN RPGDRV+ Sbjct: 124 AERAQMIAEYEDRVGELVTGTVKKVNRDNVIIDLGNNAEGVIYRDDMLPRENFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMIVELFRLEVPEIAEETLEIKSAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV +EL E++DIV+W ++ FVINA+ PA V +V DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSSELGGERVDIVLWDEEAPQFVINAMAPAEVASIVADE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIG+ GQNVRLASQLTGW ++++T E+ +Q + + F+ Sbjct: 304 DTMTMDVAVEPDNLAQAIGKSGQNVRLASQLTGWELNVMTIEDLEKKQQDESAQIIDVFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A +L +EGF +EE+A V +SE+ IEG DE+ E++ RAR YL + Sbjct: 364 TGLDIDEEFAGVLASEGFTSLEEIAYVPVSELLEIEGLDEDIIEELRNRARAYLTTKALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKGGN 480 ++ L EEL ++ G+ ++I VAL + G+ +E+LA D D+ G E G+ Sbjct: 424 DEES---LEPKEELLNLAGMTNEIAVALAKQGVTDLEELAEQGTDEICDIEGLDEKSAGD 480 Query: 481 I 481 Sbjct: 481 F 481 >gi|188532503|ref|YP_001906300.1| transcription elongation factor NusA [Erwinia tasmaniensis Et1/99] gi|188027545|emb|CAO95392.1| Transcription elongation protein NusA (N utilization substance protein A) [Erwinia tasmaniensis Et1/99] Length = 501 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/484 (41%), Positives = 312/484 (64%), Gaps = 10/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L+ A D S +GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLEAALYEDESFSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ +DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVSRDNISLEVRPNDGSSTNAEAVIIREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 VDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + Sbjct: 364 VFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALTTL 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENK 477 + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL G S+ + Sbjct: 424 ALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDIEGLSDER 483 Query: 478 GGNI 481 G + Sbjct: 484 AGEL 487 >gi|120556256|ref|YP_960607.1| transcription elongation factor NusA [Marinobacter aquaeolei VT8] gi|120326105|gb|ABM20420.1| NusA antitermination factor [Marinobacter aquaeolei VT8] Length = 497 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/481 (41%), Positives = 319/481 (66%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYEDEEADIRVAIDRRTGEYETFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ V +++L+ A + D ++ G + + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTLQEAEEIDTNLKPGDMYEEKVESVAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++D++GE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+ Sbjct: 124 AERMKIVDSYRDRIGELVSGTVKKVTRDNVIVDLGGNAEALLPREHLIPRETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++R + RGPQ++LSRT Q +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 ALLLEIRTDHRGPQLILSRTDSQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV++ + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLYDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLA++LTGWT++++TEEE +++++N + F Sbjct: 304 DRHTMDVAVAEDNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEYNRLLEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L + Sbjct: 364 AHLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + ++L ++ G+D + L G++TMEDLA S+D+LL G E + G Sbjct: 424 SEEALEGAEPEDDLLNMDGMDRALAFKLAGMGVRTMEDLAEQSIDELLEIEGMDEERAGQ 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|254516618|ref|ZP_05128677.1| N utilization substance protein A [gamma proteobacterium NOR5-3] gi|219675041|gb|EED31408.1| N utilization substance protein A [gamma proteobacterium NOR5-3] Length = 497 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/470 (43%), Positives = 315/470 (67%), Gaps = 9/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +E+ Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+A Sbjct: 64 VVPDDEMALLGTQFTTEEAIEQDPSLKPGDVYQEQVENVGFGRIAAQTAKQVIVQKVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++ +VGE+I+GTVK+V NVIVDLGN ++G++ R++ + RE R DRV++ Sbjct: 124 ERAQVVEQYESRVGELIAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV ++ Sbjct: 184 ILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE+ Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM Sbjct: 304 SNTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEAVEKQEAEAGQVIQTFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V I E+ SI+GFDE+ A E++ RA++ L + I Sbjct: 364 KLDVDEDVAGILVDEGFTTLEEVAYVPIDEMTSIDGFDEDIAEELRARAKDALLTLAIAS 423 Query: 425 QKKIRELGVSE---ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ ELG E +L + G+D + L GI TMEDLA VD+L+ Sbjct: 424 EE---ELGAQEPAADLLGMDGMDRHLAFILSSRGIVTMEDLAEQGVDELM 470 >gi|262189773|ref|ZP_06048124.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93] gi|262034350|gb|EEY52739.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93] Length = 504 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ + L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|229592637|ref|YP_002874756.1| transcription elongation factor NusA [Pseudomonas fluorescens SBW25] gi|229364503|emb|CAY52353.1| transcription termination factor [Pseudomonas fluorescens SBW25] Length = 493 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/467 (43%), Positives = 309/467 (66%), Gaps = 13/467 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63 Query: 68 VVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVEE +E + +++ + P +G VV + + ++FGR+A Q+AKQVI+Q Sbjct: 64 VVEEADLDDPAIETWPSKVA-----ETHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVREAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G Sbjct: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+ Sbjct: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V + Sbjct: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Sbjct: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F+ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+T E++ RA++ L Sbjct: 359 RNFIDELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLT 418 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 I ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|188577681|ref|YP_001914610.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522133|gb|ACD60078.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 312/466 (66%), Gaps = 5/466 (1%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLLEVVEE- 71 DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R EVV + Sbjct: 2 DAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRWEVVADD 61 Query: 72 --VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VREAER + Sbjct: 62 VVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVREAERQQ 121 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188 +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV+ Y+ + Sbjct: 122 VVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRVRGYLAE 181 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV + D+ Sbjct: 182 VRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVIAHDART 241 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++DED + Sbjct: 242 DPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVDEDKHSM 301 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 ++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q FM + V Sbjct: 302 DLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLFMDRLEV 361 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + ++ + Sbjct: 362 DEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAALAEEEGL 421 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 422 EGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDFG 467 >gi|269103408|ref|ZP_06156105.1| transcription termination protein NusA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163306|gb|EEZ41802.1| transcription termination protein NusA [Photobacterium damselae subsp. damselae CIP 102761] Length = 494 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 311/478 (65%), Gaps = 5/478 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR + Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKYEAEIDVRVTIDRKTGEFETFRRWK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTLEITLEAAQFEDETVELGDFVEDEIQSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V VIVDLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVAQFVDNEGDLITGVVKKVNRDAVIVDLGNNAEAVIGRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P + +LF +EVPEI ++++ +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFMTRSKPAMLSELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVSSIIVDEDSH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V K L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E F + + Sbjct: 304 TMDIAVEKANLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHQEEAQESIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF +EE+A V ++E+ +EG +EET E++ RA+E L I + ++ Sbjct: 364 DIDEDFASVLVTEGFTTLEEIAYVPVNELLEVEGLNEETIDELRNRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +E+L ++ G++ ++ L GI T+EDLA DDL+ G E K G + Sbjct: 424 SL-DAEPAEDLLALEGLERELAFKLAAKGILTLEDLADQGTDDLIDIEGVDEAKAGEL 480 >gi|292486836|ref|YP_003529706.1| transcription elongation protein nusA [Erwinia amylovora CFBP1430] gi|292900766|ref|YP_003540135.1| transcription elongation protein [Erwinia amylovora ATCC 49946] gi|291200614|emb|CBJ47746.1| transcription elongation protein [Erwinia amylovora ATCC 49946] gi|291552253|emb|CBA19290.1| Transcription elongation protein nusA [Erwinia amylovora CFBP1430] gi|312170904|emb|CBX79163.1| Transcription elongation protein nusA [Erwinia amylovora ATCC BAA-2158] Length = 501 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/484 (41%), Positives = 312/484 (64%), Gaps = 10/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLEAALYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ +DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 VDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAAID 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + Sbjct: 364 VFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALTTL 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENK 477 + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL G S + Sbjct: 424 ALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDIDGLSNER 483 Query: 478 GGNI 481 G + Sbjct: 484 AGEL 487 >gi|258620312|ref|ZP_05715350.1| N utilization substance protein A [Vibrio mimicus VM573] gi|262172282|ref|ZP_06039960.1| transcription termination protein NusA [Vibrio mimicus MB-451] gi|262401660|ref|ZP_06078226.1| transcription termination protein NusA [Vibrio sp. RC586] gi|258587191|gb|EEW11902.1| N utilization substance protein A [Vibrio mimicus VM573] gi|261893358|gb|EEY39344.1| transcription termination protein NusA [Vibrio mimicus MB-451] gi|262352077|gb|EEZ01207.1| transcription termination protein NusA [Vibrio sp. RC586] Length = 495 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|121587876|ref|ZP_01677633.1| N utilization substance protein A [Vibrio cholerae 2740-80] gi|153215844|ref|ZP_01950176.1| N utilization substance protein A [Vibrio cholerae 1587] gi|229512904|ref|ZP_04402371.1| transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229520933|ref|ZP_04410355.1| transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229530447|ref|ZP_04419835.1| transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|121547912|gb|EAX57996.1| N utilization substance protein A [Vibrio cholerae 2740-80] gi|124114561|gb|EAY33381.1| N utilization substance protein A [Vibrio cholerae 1587] gi|229332220|gb|EEN97708.1| transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229342166|gb|EEO07162.1| transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229350153|gb|EEO15106.1| transcription termination protein NusA [Vibrio cholerae TMA 21] gi|327483444|gb|AEA77851.1| Transcription termination protein NusA [Vibrio cholerae LMA3894-4] Length = 495 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ + L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|307261095|ref|ZP_07542774.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869227|gb|EFN01025.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 493 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/465 (41%), Positives = 306/465 (65%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G+D I L E GI T+E+LA + DDL Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDL 468 >gi|238793021|ref|ZP_04636650.1| Transcription termination factor NusA [Yersinia intermedia ATCC 29909] gi|238727621|gb|EEQ19146.1| Transcription termination factor NusA [Yersinia intermedia ATCC 29909] Length = 495 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVNEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFRQYLGEIVTGVVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDRH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|110643410|ref|YP_671140.1| transcription elongation factor NusA [Escherichia coli 536] gi|110345002|gb|ABG71239.1| N utilization substance protein A [Escherichia coli 536] Length = 495 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGVQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + ++L ++ G+D + L G+ ++EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPCDDLLNLEGVDRDLAFKLAARGVCSLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|113969369|ref|YP_733162.1| transcription elongation factor NusA [Shewanella sp. MR-4] gi|114046596|ref|YP_737146.1| transcription elongation factor NusA [Shewanella sp. MR-7] gi|113884053|gb|ABI38105.1| NusA antitermination factor [Shewanella sp. MR-4] gi|113888038|gb|ABI42089.1| NusA antitermination factor [Shewanella sp. MR-7] Length = 499 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 309/467 (66%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VIDDNGVALENPYREITLEAARFENPEIQPGDFIEDEIESVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 MKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + SEEL ++ G++ + L GI T+EDLA +DD Sbjct: 424 ASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDD 470 >gi|330807482|ref|YP_004351944.1| transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375590|gb|AEA66940.1| Putative transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 493 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/467 (43%), Positives = 308/467 (65%), Gaps = 13/467 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63 Query: 68 VVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVEE +E + +++ + P +G VV + + ++FGR+A Q+AKQVI+Q Sbjct: 64 VVEEADLDDPAIETWPSKVA-----ETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVREAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G Sbjct: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+ Sbjct: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V + Sbjct: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Sbjct: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F+ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L Sbjct: 359 RNFIDELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLT 418 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 I ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|26991396|ref|NP_746821.1| transcription elongation factor NusA [Pseudomonas putida KT2440] gi|148549780|ref|YP_001269882.1| transcription elongation factor NusA [Pseudomonas putida F1] gi|24986465|gb|AAN70285.1|AE016669_3 N utilization substance protein A [Pseudomonas putida KT2440] gi|148513838|gb|ABQ80698.1| NusA antitermination factor [Pseudomonas putida F1] gi|313500621|gb|ADR61987.1| NusA [Pseudomonas putida BIRD-1] Length = 493 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/462 (43%), Positives = 307/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E +++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F++ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS 465 >gi|153826517|ref|ZP_01979184.1| N utilization substance protein A [Vibrio cholerae MZO-2] gi|149739697|gb|EDM53904.1| N utilization substance protein A [Vibrio cholerae MZO-2] Length = 495 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ + L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|148827021|ref|YP_001291774.1| transcription elongation factor NusA [Haemophilus influenzae PittGG] gi|148718263|gb|ABQ99390.1| transcription elongation factor NusA [Haemophilus influenzae PittGG] Length = 495 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/465 (41%), Positives = 314/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ FM A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNTKHQAEDNKVLNLFMNAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITVAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 468 >gi|312885214|ref|ZP_07744893.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC BAA-2122] gi|309367154|gb|EFP94727.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC BAA-2122] Length = 495 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPDMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ ++ + FM+ + Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDDLHKKHAEESQAAIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DEE E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEELVEELRNRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD---LLGWSENKGGNI 481 + +++L + G++ ++ L G+ T+EDLA +DD + G +E + G + Sbjct: 424 SFEGVEPADDLLGLEGLEREMAFKLAARGVATLEDLAEQGIDDIESIEGLTEERAGEL 481 >gi|90409004|ref|ZP_01217134.1| transcription elongation factor NusA [Psychromonas sp. CNPT3] gi|90309889|gb|EAS38044.1| transcription elongation factor NusA [Psychromonas sp. CNPT3] Length = 500 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/484 (40%), Positives = 308/484 (63%), Gaps = 7/484 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ ETG FR Sbjct: 2 NNKEILLVVEAVSNEKGLPREAIFEALESALAIATKKKYEMEIEVRVEIDRETGTFETFR 61 Query: 65 LLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+ E+EN +++ + A P I IG + D +P + F R+ Q+AKQVI+QK Sbjct: 62 RWLVLAPDAEMENSCAEMTYEAAVYDQPEIQIGEFIEDDIPSVTFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + ++ ++ GE+++G VKR+ ++++DLG N++ VI RDE + REN RPGD Sbjct: 122 VREAERAQVVEQYIEQKGELVTGVVKRMTRDSILLDLGGNAEAVIFRDEMLPRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +YDVR E RG Q+ ++RT P+ +++LF +EVPEI ++ + A +RDPGSRAK+A Sbjct: 182 RLRGLLYDVRPEARGAQLFMTRTQPEMLIELFRLEVPEIAEEMIDLMAAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQA+ +EL E++DI++W +SA F INA+ PA V +V Sbjct: 242 VKSNDQRIDPIGACVGMRGARVQAISSELGGERVDIILWDDNSAQFAINAMSPAEVVSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E L+ AIGR GQN+RLASQLTGW ++++T + Q + + Sbjct: 302 VDEDSHSMDIAVEEENLAQAIGRNGQNIRLASQLTGWELNVMTVAQLQEKHQAEADSVIG 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+ +D A +LV EGF +EE+A V ++E+ I+G DE E++ RA+ L Sbjct: 362 VFTKALEIDADFAAVLVDEGFTSLEEIAYVPVTELLEIDGLDENMVDELRTRAKNVLATK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENK 477 + ++ I +E+L ++ G+D+ + GI T+EDLA +VDDL+ +E K Sbjct: 422 ALAAEENIEGAKPAEDLLALEGLDAHLAYVFASKGIITLEDLAEQAVDDLIDIEELNEEK 481 Query: 478 GGNI 481 G + Sbjct: 482 AGTL 485 >gi|117919478|ref|YP_868670.1| transcription elongation factor NusA [Shewanella sp. ANA-3] gi|117611810|gb|ABK47264.1| NusA antitermination factor [Shewanella sp. ANA-3] Length = 499 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 308/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 INALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + SEEL ++ G++ + L GI T+EDLA +DD Sbjct: 424 ATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDD 470 >gi|15640662|ref|NP_230291.1| transcription elongation factor NusA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121728410|ref|ZP_01681438.1| N utilization substance protein A [Vibrio cholerae V52] gi|147674353|ref|YP_001216136.1| transcription elongation factor NusA [Vibrio cholerae O395] gi|153801994|ref|ZP_01956580.1| N utilization substance protein A [Vibrio cholerae MZO-3] gi|153818700|ref|ZP_01971367.1| N utilization substance protein A [Vibrio cholerae NCTC 8457] gi|153822531|ref|ZP_01975198.1| N utilization substance protein A [Vibrio cholerae B33] gi|153829178|ref|ZP_01981845.1| N utilization substance protein A [Vibrio cholerae 623-39] gi|227080823|ref|YP_002809374.1| N utilization substance protein A [Vibrio cholerae M66-2] gi|229505736|ref|ZP_04395246.1| transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229509231|ref|ZP_04398716.1| transcription termination protein NusA [Vibrio cholerae B33] gi|229519560|ref|ZP_04409003.1| transcription termination protein NusA [Vibrio cholerae RC9] gi|229608847|ref|YP_002879495.1| transcription elongation factor NusA [Vibrio cholerae MJ-1236] gi|254850876|ref|ZP_05240226.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744141|ref|ZP_05418094.1| transcription termination protein NusA [Vibrio cholera CIRS 101] gi|262156117|ref|ZP_06029236.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1] gi|262169941|ref|ZP_06037631.1| transcription termination protein NusA [Vibrio cholerae RC27] gi|297580768|ref|ZP_06942694.1| N utilization substance protein A [Vibrio cholerae RC385] gi|298500758|ref|ZP_07010561.1| transcription elongation factor NusA [Vibrio cholerae MAK 757] gi|9655078|gb|AAF93808.1| N utilization substance protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629344|gb|EAX61776.1| N utilization substance protein A [Vibrio cholerae V52] gi|124122453|gb|EAY41196.1| N utilization substance protein A [Vibrio cholerae MZO-3] gi|126510780|gb|EAZ73374.1| N utilization substance protein A [Vibrio cholerae NCTC 8457] gi|126519949|gb|EAZ77172.1| N utilization substance protein A [Vibrio cholerae B33] gi|146316236|gb|ABQ20775.1| N utilization substance protein A [Vibrio cholerae O395] gi|148875367|gb|EDL73502.1| N utilization substance protein A [Vibrio cholerae 623-39] gi|227008711|gb|ACP04923.1| N utilization substance protein A [Vibrio cholerae M66-2] gi|227012467|gb|ACP08677.1| N utilization substance protein A [Vibrio cholerae O395] gi|229344249|gb|EEO09224.1| transcription termination protein NusA [Vibrio cholerae RC9] gi|229353803|gb|EEO18739.1| transcription termination protein NusA [Vibrio cholerae B33] gi|229357959|gb|EEO22876.1| transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229371502|gb|ACQ61925.1| transcription termination protein NusA [Vibrio cholerae MJ-1236] gi|254846581|gb|EET24995.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738081|gb|EET93473.1| transcription termination protein NusA [Vibrio cholera CIRS 101] gi|262021675|gb|EEY40386.1| transcription termination protein NusA [Vibrio cholerae RC27] gi|262030153|gb|EEY48798.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1] gi|297535184|gb|EFH74019.1| N utilization substance protein A [Vibrio cholerae RC385] gi|297540539|gb|EFH76597.1| transcription elongation factor NusA [Vibrio cholerae MAK 757] Length = 495 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ + L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|315634096|ref|ZP_07889385.1| N utilization substance A [Aggregatibacter segnis ATCC 33393] gi|315477346|gb|EFU68089.1| N utilization substance A [Aggregatibacter segnis ATCC 33393] Length = 498 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/469 (41%), Positives = 307/469 (65%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINTKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ AR DP+ IG V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVEEVNNPTKEITLEAARFEDPNAQIGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRV 182 + +F+ K G+II+ TVK+ +VI+D+ DG V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVSPESKGAQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + ++ F Sbjct: 304 EDKHAMDIAVEEANLAQAIGRNGQNVRLATQLTGWVLNVMTTQDLNAKHQAEDDKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGID 421 + A+ +DE A LL+ EGF+ +EELA V +SE+ +I+G ++E V E+Q RA+ + Sbjct: 364 IDALEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ + + L ++ G++ I L E I T+EDLA VDDL Sbjct: 424 LAEEEALKKAKIEDRLLNLEGMNRHIAFKLAEKQITTLEDLAEQGVDDL 472 >gi|315294914|gb|EFU54253.1| transcription termination factor NusA [Escherichia coli MS 153-1] Length = 495 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/478 (42%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ID VGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDLVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I ++ Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 >gi|163802303|ref|ZP_02196197.1| transcription elongation factor NusA [Vibrio sp. AND4] gi|159173832|gb|EDP58646.1| transcription elongation factor NusA [Vibrio sp. AND4] Length = 495 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/482 (42%), Positives = 312/482 (64%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VEN T +IS++ A+ D +G V D +P + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVENPTKEISIEAAQYEDADAQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V V++DLGN ++ VI RD+ + RENLRPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENLRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 DPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RTDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMT----VADLQKKHAEESQASIENF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + Sbjct: 360 MKYLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELIEELRTRAKDALTTIAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGG 479 ++ L +E+L + G++ ++ L G+ T+EDLA +DDL G +E + G Sbjct: 420 AQEESFDGLEPAEDLLGLEGLEREMAFKLAAKGVVTLEDLADQGIDDLEGTEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|259907041|ref|YP_002647397.1| transcription elongation factor NusA [Erwinia pyrifoliae Ep1/96] gi|224962663|emb|CAX54118.1| Transcription elongation protein NusA (N utilization substance protein A) [Erwinia pyrifoliae Ep1/96] gi|283476837|emb|CAY72675.1| Transcription elongation protein nusA [Erwinia pyrifoliae DSM 12163] gi|310766253|gb|ADP11203.1| transcription elongation factor NusA [Erwinia sp. Ejp617] Length = 501 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/484 (41%), Positives = 312/484 (64%), Gaps = 10/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLEAAIYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ +DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 VDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAAID 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A LLV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + Sbjct: 364 VFTKHLDIDEDFATLLVEEGFSSLEELAYVPIKELLEIDGLDEETVEALRDRAKNALTTL 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENK 477 + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL G S+ + Sbjct: 424 ALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDIDGLSDER 483 Query: 478 GGNI 481 G + Sbjct: 484 AGEL 487 >gi|149926272|ref|ZP_01914534.1| transcription elongation factor NusA [Limnobacter sp. MED105] gi|149825090|gb|EDM84302.1| transcription elongation factor NusA [Limnobacter sp. MED105] Length = 489 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 208/479 (43%), Positives = 310/479 (64%), Gaps = 8/479 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + DA+A EK++D+D+V + ++ A + + D+RV I+ +TGD FR E Sbjct: 4 ELLLLVDALAREKNVDKDIVFGALELALASATKKRFDEEVDVRVSIDRDTGDYDTFRRWE 63 Query: 68 VVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E + Y Q+ L A D ++G + + L P++FGR+ Q+AKQVI+Q+VR+A Sbjct: 64 VVTEEDFYDPAYQMVLDQALKHDEEAEMGDFIEEELEPVEFGRIGAQAAKQVILQRVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ +I+ G VKR+E G+ IV+ G + + RD+ I RE+LRPGDRV++Y Sbjct: 124 EREQILQDFLDRGDKIVIGQVKRMERGDAIVESGRIEARLPRDQMIPRESLRPGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ V R RG QV+LSRT P+F+ LF MEVPEI G +++K +RDPG RAK+AV + D Sbjct: 184 LWKVDRMARGQQVILSRTSPEFIKALFAMEVPEIEQGHLEIKGAARDPGMRAKIAVLAHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 RRIDPIGTCVGVRGSRVQAVTQELGGERVDIVLWSEDPAQFVIGALSPATVQSIVVDEDQ 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+V + +L+ AIGR GQNVRLAS LTGW I+I+T EE + +++ + + F Sbjct: 304 HVMEVVVDEAELAQAIGRSGQNVRLASDLTGWQINIMTPEESAKRSEEEIGKLRELFTSK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A++L+ EGF+ ++++A V I+E+ IE FD +T E++ RAR L I + Sbjct: 364 LDVDEKVANILIEEGFSGLQKVAYVPIAEMQEIEAFDADTVEELRTRARNALLTEAIARE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + G +L SI G+D+ + L I E LA +VD+L+ G E++ +I Sbjct: 424 EMVEGAG---DLMSIEGVDADLVGKLAAAEISDREGLAELAVDELVEIAGIEEDRARDI 479 >gi|307245494|ref|ZP_07527581.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254448|ref|ZP_07536285.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258907|ref|ZP_07540638.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853553|gb|EFM85771.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862589|gb|EFM94546.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866931|gb|EFM98788.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 493 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/465 (41%), Positives = 305/465 (65%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G+D I L E GI T+E LA + DDL Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEGLAEQATDDL 468 >gi|24372786|ref|NP_716828.1| transcription elongation factor NusA [Shewanella oneidensis MR-1] gi|24346871|gb|AAN54273.1|AE015564_4 N utilization substance protein A [Shewanella oneidensis MR-1] Length = 499 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 309/467 (66%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VIDDNGVALENPYREITLEAARFEEPEIQPGEYIEDQIESVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 MKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + SEEL ++ G++ + L GI T+EDLA +DD Sbjct: 424 ASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDD 470 >gi|94310970|ref|YP_584180.1| transcription elongation factor NusA [Cupriavidus metallidurans CH34] gi|93354822|gb|ABF08911.1| transcription termination/antitermination L factor [Cupriavidus metallidurans CH34] Length = 491 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/467 (42%), Positives = 317/467 (67%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++ I + + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDEQGLQEPDKQILLFEAREQNADIQLDDYIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K+ E VS++L S+ G+ ++ L E I T +DLA +VD+L+ Sbjct: 424 EEKVEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELV 468 >gi|168237988|ref|ZP_02663046.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733934|ref|YP_002116237.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709436|gb|ACF88657.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289151|gb|EDY28520.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 500 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/483 (40%), Positives = 312/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K Sbjct: 424 QDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|16766585|ref|NP_462200.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415219|ref|YP_152294.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181798|ref|YP_218215.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616293|ref|YP_001590258.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552065|ref|ZP_02345818.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990148|ref|ZP_02571248.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231896|ref|ZP_02656954.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243121|ref|ZP_02668053.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262702|ref|ZP_02684675.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463490|ref|ZP_02697407.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819644|ref|ZP_02831644.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442917|ref|YP_002042544.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450306|ref|YP_002047316.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469393|ref|ZP_03075377.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248686|ref|YP_002148213.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265797|ref|ZP_03165871.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364149|ref|YP_002143786.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243925|ref|YP_002217260.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388465|ref|ZP_03215077.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928046|ref|ZP_03219246.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858537|ref|YP_002245188.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585085|ref|YP_002638884.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910082|ref|ZP_04653919.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141550|sp|P37430|NUSA_SALTY RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|16421846|gb|AAL22159.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129476|gb|AAV78982.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129431|gb|AAX67134.1| transcription pausing; L factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365657|gb|ABX69425.1| hypothetical protein SPAB_04099 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401580|gb|ACF61802.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408610|gb|ACF68829.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455757|gb|EDX44596.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633199|gb|EDX51613.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095626|emb|CAR61194.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212389|gb|ACH49786.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244052|gb|EDY26672.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938441|gb|ACH75774.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605563|gb|EDZ04108.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322368|gb|EDZ07565.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323222|gb|EDZ11061.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331138|gb|EDZ17902.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333927|gb|EDZ20691.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337851|gb|EDZ24615.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343493|gb|EDZ30257.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348590|gb|EDZ35221.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710340|emb|CAR34698.1| L factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469613|gb|ACN47443.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248453|emb|CBG26290.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995484|gb|ACY90369.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159837|emb|CBW19356.1| transcription termination/antitermination L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914313|dbj|BAJ38287.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087734|emb|CBY97498.1| Transcription elongation protein nusA N utilization substance protein A; L factor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225971|gb|EFX51025.1| Transcription termination protein NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615292|gb|EFY12213.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618349|gb|EFY15240.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622846|gb|EFY19690.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626832|gb|EFY23629.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631401|gb|EFY28161.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635332|gb|EFY32046.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643467|gb|EFY40030.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647097|gb|EFY43598.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648900|gb|EFY45345.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655092|gb|EFY51403.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657695|gb|EFY53963.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664191|gb|EFY60389.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667474|gb|EFY63636.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674722|gb|EFY70814.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675645|gb|EFY71718.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682281|gb|EFY78304.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684884|gb|EFY80882.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716285|gb|EFZ07856.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131647|gb|ADX19077.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191869|gb|EFZ77117.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199028|gb|EFZ84125.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204272|gb|EFZ89281.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207619|gb|EFZ92566.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211328|gb|EFZ96172.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214730|gb|EFZ99479.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221210|gb|EGA05636.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224049|gb|EGA08342.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230302|gb|EGA14421.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233278|gb|EGA17372.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239315|gb|EGA23365.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242434|gb|EGA26460.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246944|gb|EGA30910.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254123|gb|EGA37943.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255240|gb|EGA39017.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262703|gb|EGA46259.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264013|gb|EGA47521.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269399|gb|EGA52854.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625038|gb|EGE31383.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990145|gb|AEF09128.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 500 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/483 (40%), Positives = 312/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K Sbjct: 424 QDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|332141181|ref|YP_004426919.1| transcription elongation factor NusA [Alteromonas macleodii str. 'Deep ecotype'] gi|327551203|gb|AEA97921.1| transcription elongation factor NusA [Alteromonas macleodii str. 'Deep ecotype'] Length = 498 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 302/467 (64%), Gaps = 4/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 4 EILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRRWL 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ +E EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + E++DKVGE+++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDRV+ Sbjct: 124 AERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + F Sbjct: 304 DSNNMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNLFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A +LV EGF +EE+A V SE+ ++EG DE+ E++ RAR +L + Sbjct: 364 AGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEDMVEELRNRARAFLTTRALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + +E L ++ G+ + L G+ +E+LA DD+ Sbjct: 424 NEESLEGAEPTEALLNLEGMSKHVAYVLASRGVIDLEELAEQGTDDI 470 >gi|300718578|ref|YP_003743381.1| transcription elongation protein [Erwinia billingiae Eb661] gi|299064414|emb|CAX61534.1| Transcription elongation protein [Erwinia billingiae Eb661] Length = 495 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 313/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIEVRVSIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L AR D ++++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTMPTREITLDAARYEDEALNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+ + GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFRQQEGEIITGVVKKVNRDNISLDLGSNAEAVIIREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDVFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + + +E+L ++ G+D ++ L G+ T+EDLA VDDL G ++ + G + Sbjct: 424 SLGDNQPAEDLLNLEGLDRELAFKLAAIGVCTLEDLAEQGVDDLTDIEGLNDEQAGEL 481 >gi|229525295|ref|ZP_04414700.1| transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] gi|229338876|gb|EEO03893.1| transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] Length = 495 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/478 (41%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFDAASFDDDSVQLGDYIEDQIDSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ + L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|262163944|ref|ZP_06031683.1| transcription termination protein NusA [Vibrio mimicus VM223] gi|262027472|gb|EEY46138.1| transcription termination protein NusA [Vibrio mimicus VM223] Length = 495 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 310/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEPDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G +E + G + Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGEL 481 >gi|28899231|ref|NP_798836.1| transcription elongation factor NusA [Vibrio parahaemolyticus RIMD 2210633] gi|153838305|ref|ZP_01990972.1| transcription elongation factor NusA [Vibrio parahaemolyticus AQ3810] gi|260362206|ref|ZP_05775190.1| transcription termination factor NusA [Vibrio parahaemolyticus K5030] gi|260879074|ref|ZP_05891429.1| transcription termination factor NusA [Vibrio parahaemolyticus AN-5034] gi|260897745|ref|ZP_05906241.1| transcription termination factor NusA [Vibrio parahaemolyticus Peru-466] gi|260900801|ref|ZP_05909196.1| transcription termination factor NusA [Vibrio parahaemolyticus AQ4037] gi|28807455|dbj|BAC60720.1| N utilization substance protein A [Vibrio parahaemolyticus RIMD 2210633] gi|149748294|gb|EDM59153.1| transcription elongation factor NusA [Vibrio parahaemolyticus AQ3810] gi|308088968|gb|EFO38663.1| transcription termination factor NusA [Vibrio parahaemolyticus Peru-466] gi|308089567|gb|EFO39262.1| transcription termination factor NusA [Vibrio parahaemolyticus AN-5034] gi|308108198|gb|EFO45738.1| transcription termination factor NusA [Vibrio parahaemolyticus AQ4037] gi|308111470|gb|EFO49010.1| transcription termination factor NusA [Vibrio parahaemolyticus K5030] gi|328474233|gb|EGF45038.1| transcription elongation factor NusA [Vibrio parahaemolyticus 10329] Length = 495 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/482 (41%), Positives = 316/482 (65%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++VE+ T +ISL+ A+ D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDQVESPTKEISLEAAQYEDDSVELGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLEELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMT----VADLQKKHAEESQASIENF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + Sbjct: 360 MKYLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELVEELRGRAKDALTTIAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGG 479 ++ L +++L + G++ ++ L G+ T+EDLA +DDL G +E + G Sbjct: 420 AQEESFEGLEPADDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|205354191|ref|YP_002227992.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273972|emb|CAR38977.1| L factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629312|gb|EGE35655.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 500 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/483 (40%), Positives = 312/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA + +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADIASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K Sbjct: 424 QDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|167035704|ref|YP_001670935.1| transcription elongation factor NusA [Pseudomonas putida GB-1] gi|325276164|ref|ZP_08141969.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51] gi|166862192|gb|ABZ00600.1| NusA antitermination factor [Pseudomonas putida GB-1] gi|324098701|gb|EGB96742.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51] Length = 493 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/462 (43%), Positives = 306/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E +++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F+ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS 465 >gi|71734581|ref|YP_276312.1| transcription elongation factor NusA [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482262|ref|ZP_05636303.1| transcription elongation factor NusA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289646960|ref|ZP_06478303.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. 2250] gi|298488455|ref|ZP_07006486.1| Transcription termination protein NusA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71555134|gb|AAZ34345.1| N utilization substance protein A [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157080|gb|EFH98169.1| Transcription termination protein NusA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330987054|gb|EGH85157.1| transcription elongation factor NusA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011498|gb|EGH91554.1| transcription elongation factor NusA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 493 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|289624601|ref|ZP_06457555.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868245|gb|EGH02954.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 493 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIHAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|320322529|gb|EFW78622.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. B076] Length = 493 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|254787150|ref|YP_003074579.1| transcription elongation factor NusA [Teredinibacter turnerae T7901] gi|237684737|gb|ACR12001.1| transcription elongation / termination protein, N utilization substance A [Teredinibacter turnerae T7901] Length = 496 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/467 (43%), Positives = 316/467 (67%), Gaps = 3/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAV+ EK +DRDV+ + ++ A + Y SDI V I+ TGD R Sbjct: 4 EILLVADAVSNEKGVDRDVIFQAIELALATATKKRYDEDSDIEVLIDRRTGDYVTKRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++ + Q +L+ A ++D ++ G V + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDDDTLAELGTQFTLEEAHEKDTALVAGDVYEEVVENVEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++ +VGE++SG+VK+V N+IVDLGN ++G++ R+E + RE R DRV++ Sbjct: 124 ERAQIVDQYRSRVGELVSGSVKKVTRDNIIVDLGNNAEGLLPREELVGREVFRMNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + DVR E RGPQ+ LSR + +++LF +EVPEI ++ +K +RDPGSRAK+AV ++ Sbjct: 184 LLMDVRPEARGPQLYLSRACSEMLIELFKIEVPEIAEEVIALKGAARDPGSRAKIAVSTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E+IDIV+W + A FVINA+ PA + +VLDE+ Sbjct: 244 DGRIDPVGACVGMRGSRVQAVSNELGNERIDIVLWDDNPAQFVINAMAPAEIESIVLDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLAS+LTGW I++++ E+ + + ++ + FM+ Sbjct: 304 THAMDLAVDEDNLAQAIGRGGQNVRLASELTGWEINVMSVEQWNEKQAQEAGSSKEVFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE +A +LV EGF +EE+A V + E +IEGFDE+ A E++ RA++ L + Sbjct: 364 ALDVDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEDIANELRSRAKDALLTQALAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++ +E+L ++ G+D+++ L G+ MEDLA SVD+L+ Sbjct: 424 EEQTVGQEPAEDLLTMEGMDNELAFVLASRGVTCMEDLAEQSVDELM 470 >gi|238755155|ref|ZP_04616501.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473] gi|238706602|gb|EEP98973.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473] Length = 495 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 304/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ DPS +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTMPTREITLEAAQFEDPSTQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRSEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDRH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 424 SLGDQKPADDLLNLEGLERSMAFKLAARGVCTLEDLAEQGIDDL 467 >gi|312963084|ref|ZP_07777569.1| N utilization substance protein A [Pseudomonas fluorescens WH6] gi|311282595|gb|EFQ61191.1| N utilization substance protein A [Pseudomonas fluorescens WH6] Length = 493 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 307/467 (65%), Gaps = 13/467 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63 Query: 68 VVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVEE +E + +++ P +G VV + + ++FGR+A Q+AKQVI+Q Sbjct: 64 VVEEDDLDDPAIETWPSKVA-----QTHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVREAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G Sbjct: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+ Sbjct: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V + Sbjct: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Sbjct: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L Sbjct: 359 RNFIEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEDIVNELRARAKDRLLT 418 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 I ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|28871625|ref|NP_794244.1| N utilization substance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|213966648|ref|ZP_03394799.1| N utilization substance protein A [Pseudomonas syringae pv. tomato T1] gi|301383158|ref|ZP_07231576.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato Max13] gi|302063407|ref|ZP_07254948.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato K40] gi|302133780|ref|ZP_07259770.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854877|gb|AAO57939.1| N utilization substance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|213928498|gb|EEB62042.1| N utilization substance protein A [Pseudomonas syringae pv. tomato T1] gi|330877234|gb|EGH11383.1| transcription elongation factor NusA [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016647|gb|EGH96703.1| transcription elongation factor NusA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 493 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQS 465 >gi|293390259|ref|ZP_06634593.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950793|gb|EFE00912.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 498 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/469 (41%), Positives = 305/469 (65%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRV 182 + +F+ K G+II+ TVK+ +VI+D+ DG V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ F Sbjct: 304 EDKHSMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGID 421 + + +DE A LL+ EGF+ +EELA V +SE+ +I+G ++E V E+Q RA+ + Sbjct: 364 IDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAQA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL Sbjct: 424 LAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDL 472 >gi|320330002|gb|EFW85989.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. race 4] gi|330875221|gb|EGH09370.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. race 4] Length = 493 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLGGMDKDLAMELAVRGVITREDLAEQS 465 >gi|88705684|ref|ZP_01103394.1| Transcription elongation protein nusA [Congregibacter litoralis KT71] gi|88700197|gb|EAQ97306.1| Transcription elongation protein nusA [Congregibacter litoralis KT71] Length = 497 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/480 (42%), Positives = 320/480 (66%), Gaps = 6/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +E+ Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+A Sbjct: 64 VVPDDELALLGTQFTTEEAIEQDPSLKPGDVHEEKVENVGFGRIAAQTAKQVIVQKVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++ +VGE+++GTVK+V NVIVDLGN ++G++ R++ + RE R DRV++ Sbjct: 124 ERAQVVELYESRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV ++ Sbjct: 184 ILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE+ Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM Sbjct: 304 NVTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEALEKQEAEAGQVIQTFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ A E++ RA++ L + I Sbjct: 364 KLDVDEDVAGILVDEGFTTLEEVAYVPLEEMTSIDGFDEDIAEELRARAKDALLTLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 ++++ +E+L ++ G+D + L GI TMEDLA VD+L+ +E + G + Sbjct: 424 EEELGAQEPAEDLLTMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIEDMTEERAGEL 483 >gi|170719906|ref|YP_001747594.1| transcription elongation factor NusA [Pseudomonas putida W619] gi|169757909|gb|ACA71225.1| NusA antitermination factor [Pseudomonas putida W619] Length = 493 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 306/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E +++ + L + P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDEADLDDPAIETWLAKIHETHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F++ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS 465 >gi|329295928|ref|ZP_08253264.1| transcription elongation factor NusA [Plautia stali symbiont] Length = 495 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/478 (41%), Positives = 307/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A R Y D+RV I+ +GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATRKKYEQEIDVRVSIDRRSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T + +L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTRETTLEAARFEDEAFNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVIVREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLAS L+ W ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASLLSSWELNVMTVDDLQAKHQAEAHAAIDMFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFSSLEELAYVPINELLEIDGLDEETIEALRERAKNALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L ++ G+D + L G+ T+EDLA VDDL G + K G + Sbjct: 424 SLGNQEPAEDLLNLEGLDRALAYRLASKGVCTLEDLAEQGVDDLTDIEGLDDEKAGAL 481 >gi|126664888|ref|ZP_01735872.1| transcription elongation factor NusA [Marinobacter sp. ELB17] gi|126631214|gb|EBA01828.1| transcription elongation factor NusA [Marinobacter sp. ELB17] Length = 497 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/481 (41%), Positives = 317/481 (65%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFDDEDADIRVSIDRRTGEYDTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ V +++ + A D P + G + + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTFQEAEDISPDLQPGDMHEERIDSVAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + ++ +VGE++SGTVK+V NVIVDLGN ++ ++ R+ I+RE R GDRV+ Sbjct: 124 AERTKIVDSYRGRVGELVSGTVKKVTRDNVIVDLGNNAEALLPREHLIARETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + ++R + RGPQ++LSR+ + +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 SLLLEIRTDHRGPQLILSRSDSKMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELNGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLA++LTGWT++++TEEE ++++ + F Sbjct: 304 DRHTMDVAVAADNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEQGRLLEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + +++DE A +L+ EGF+ +EE+A + + E+ +IEGFDEET E++ RA++ L + Sbjct: 364 KHLDIDEEFAGVLIDEGFSSIEEVAYIPMEEMLAIEGFDEETVTELRKRAKDALLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + +E+L ++ GID + L GI+TMEDLA SV DLL G +E + G Sbjct: 424 NEEALDGAEPAEDLLAMEGIDRGLAFKLAGMGIRTMEDLAEQSVGDLLEIEGMNEERAGQ 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|77457005|ref|YP_346510.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf0-1] gi|77381008|gb|ABA72521.1| transcription termination factor [Pseudomonas fluorescens Pf0-1] Length = 493 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 307/467 (65%), Gaps = 13/467 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVEE +E + +++ + P +G VV + + ++FGR+A Q+AKQVI+Q Sbjct: 64 VVEENDLDDPAIETWPSKVA-----ETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVREAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G Sbjct: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+ Sbjct: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V + Sbjct: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Sbjct: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F+ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L Sbjct: 359 RNFIDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLT 418 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 I ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|66047408|ref|YP_237249.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae B728a] gi|289676023|ref|ZP_06496913.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae FF5] gi|302185431|ref|ZP_07262104.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae 642] gi|63258115|gb|AAY39211.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Pseudomonas syringae pv. syringae B728a] gi|330937945|gb|EGH41732.1| transcription elongation factor NusA [Pseudomonas syringae pv. pisi str. 1704B] Length = 493 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|126175440|ref|YP_001051589.1| transcription elongation factor NusA [Shewanella baltica OS155] gi|125998645|gb|ABN62720.1| NusA antitermination factor [Shewanella baltica OS155] Length = 499 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 309/467 (66%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRRWM 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+D+ GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVELF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 VNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + SEEL ++ G+D + GI+T+EDLA +DD Sbjct: 424 ATEEALDGVEPSEELLALEGVDRHLAYVFASKGIETLEDLAEQGIDD 470 >gi|330963974|gb|EGH64234.1| transcription elongation factor NusA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 493 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELVGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQS 465 >gi|16762052|ref|NP_457669.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143541|ref|NP_806883.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213621934|ref|ZP_03374717.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645859|ref|ZP_03375912.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25299784|pir||AI0901 L factor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504355|emb|CAD07807.1| L factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29139175|gb|AAO70743.1| L factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 500 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/483 (40%), Positives = 311/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K Sbjct: 424 QDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GEL 486 >gi|330969650|gb|EGH69716.1| transcription elongation factor NusA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 493 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKVAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|226940848|ref|YP_002795922.1| transcription elongation factor NusA [Laribacter hongkongensis HLHK9] gi|226715775|gb|ACO74913.1| NusA [Laribacter hongkongensis HLHK9] Length = 497 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/470 (42%), Positives = 311/470 (66%), Gaps = 9/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-----DIRVEINPETGDISL 62 E+L + DA+A EK++ +D+V + ++ A + + D+RV I+ TG Sbjct: 4 EILLLVDALAREKNVSKDIVFGALELALASATKKKISQDTNQDEIDVRVSIDRHTGAYET 63 Query: 63 FRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VVE+ ++ + QI++ A + + +G + +P+ ++FGR+ Q+AKQVI+Q Sbjct: 64 FRRWTVVEDNDHEFPSRQIAMSDAAEHEVEAVVGTIKEEPVEAIEFGRIGAQTAKQVILQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+R+AER++ +F D+ +++SGT+KR+E GNVI+DLG + ++ R++ I +ENLR GD Sbjct: 124 KIRDAEREQVLNDFLDRNEKLVSGTIKRIERGNVIIDLGKLEALLPREQQIPKENLRVGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ V R RGPQ++LSR PQF+ +LF EVPEI +G++++K +RD GSRAK+A Sbjct: 184 RVKAYLLRVDRMGRGPQIILSRIAPQFITELFRQEVPEIDDGMLEIKGCARDAGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D +DP G C+GMRGSRVQAV EL E++DIV+W+ D +VINAL PA V +++ Sbjct: 244 VKANDPRLDPQGTCIGMRGSRVQAVTNELGGERVDIVLWAGDIVQYVINALSPAEVQRIL 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++V+V ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + + Q Sbjct: 304 IDEDKHAMDVVVDEDQLALAIGRGGQNVRLASELTGWVLNIMTVAEAEEKHEAEDAAMKQ 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM A++VD+ +A +L +EGF +EE+A V + E+ I FD ET E++ RARE L Sbjct: 364 LFMDALDVDQDVADVLASEGFTTLEEIAYVPLEEMLQISYFDAETVNELRSRAREALLTQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++K+ V + L +PG+ + V L ENG+ T +DLA +VD+L Sbjct: 424 AIASEEKMN--SVEDALRELPGMTQDVLVKLAENGVTTRDDLADLAVDEL 471 >gi|330888659|gb|EGH21320.1| transcription elongation factor NusA [Pseudomonas syringae pv. mori str. 301020] Length = 493 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSR+K+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRSKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|251792720|ref|YP_003007446.1| transcription elongation factor NusA [Aggregatibacter aphrophilus NJ8700] gi|247534113|gb|ACS97359.1| transcription elongation factor NusA [Aggregatibacter aphrophilus NJ8700] Length = 498 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/469 (41%), Positives = 306/469 (65%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYEVDVRVTINPKTGEFDTFRRWA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T +I+L+ AR +P I +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVENVMSPTKEITLEAARFENPDIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRV 182 + +F+ K G+I++ TVK+ ++I+D+ DG V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRAKEGQIVTATVKKSNRDSIILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVNPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE S Q + N+ F Sbjct: 304 EDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELSEKHQAEDNKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGID 421 + A+ +DE A LL+ EGF+ +EELA V + E+ +I+G ++ V E+Q RA+ + Sbjct: 364 IDALEIDEEFAQLLIDEGFSTLEELAYVPVRELTAIDGLEDGDLVEELQTRAKNAITAKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL Sbjct: 424 LAEEEALKKAQIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDL 472 >gi|330950306|gb|EGH50566.1| transcription elongation factor NusA [Pseudomonas syringae Cit 7] Length = 493 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/459 (42%), Positives = 310/459 (67%), Gaps = 3/459 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ + ++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAHEFAVDQAQAKKPGAVAGDLIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + V+E +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELQVEEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDCLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 ++K+ + +E+L S+ G+D + + L G+ T EDLA Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLA 462 >gi|238760242|ref|ZP_04621387.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236] gi|238701565|gb|EEP94137.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236] Length = 495 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/464 (41%), Positives = 303/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDRH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +DE A LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 AIDEDFATTLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 424 SLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDL 467 >gi|317046740|ref|YP_004114388.1| transcription termination factor NusA [Pantoea sp. At-9b] gi|316948357|gb|ADU67832.1| transcription termination factor NusA [Pantoea sp. At-9b] Length = 495 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRRSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTREITLEAARFEDEAFNLGDFVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ G+II+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQEGDIITGVVKKVNRDNITLDLGSNAEAVIVREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V I+E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEEFATILVEEGFSSLEELAYVPINELLEIDGLDEDTVEALRERAKNALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 +E+L ++ G+D + L G+ T+EDLA VDDL G + K G + Sbjct: 424 SRGNQEPAEDLLNLEGLDRALAYRLAAIGVCTLEDLAEQGVDDLTDIEGLDDEKAGAL 481 >gi|332306994|ref|YP_004434845.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174323|gb|AEE23577.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 497 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/481 (41%), Positives = 310/481 (64%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR Sbjct: 4 EILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVSIDRVTGDFDTFRRWM 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ ++ EN +++L A+ +P I +G V D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VIADDQKQENPFAEMTLSAAQIDEPDIQLGEYVEDQIESIKFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + E++++VG++I+GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDRV+ Sbjct: 124 AERAQVMAEYEERVGDLITGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + +++ ++ F+ Sbjct: 304 DNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNSKHEEENSKVLAVFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L + Sbjct: 364 NGLDIDEDFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVEDLRSRARAALTTQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKGGN 480 ++ + EEL S+ G++ + L GI +E LA VD D+ E K G Sbjct: 424 NEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEELDEEKAGQ 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|261867879|ref|YP_003255801.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413211|gb|ACX82582.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 498 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/469 (41%), Positives = 305/469 (65%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRV 182 + +F+ K G+II+ TVK+ +VI+D+ DG V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ F Sbjct: 304 EDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGID 421 + + +DE A LL+ EGF+ +EELA V +SE+ +I+G ++E V E+Q RA+ + Sbjct: 364 IDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAQV 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL Sbjct: 424 LAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDL 472 >gi|237798562|ref|ZP_04587023.1| transcription elongation factor NusA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021415|gb|EGI01472.1| transcription elongation factor NusA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 493 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKRPGAVAGELIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|22124601|ref|NP_668024.1| transcription elongation factor NusA [Yersinia pestis KIM 10] gi|45440440|ref|NP_991979.1| transcription elongation factor NusA [Yersinia pestis biovar Microtus str. 91001] gi|21957405|gb|AAM84275.1|AE013671_2 transcription pausing L factor [Yersinia pestis KIM 10] gi|45435297|gb|AAS60856.1| N utilization substance protein A [Yersinia pestis biovar Microtus str. 91001] Length = 501 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/487 (40%), Positives = 313/487 (64%), Gaps = 6/487 (1%) Query: 1 MVSANRL--ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 M A R+ E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TG Sbjct: 1 MDEATRMNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTG 60 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 D FR V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI Sbjct: 61 DFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVI 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR 177 +QKVREAER +F+ +G+I++G VK+V ++ +DLG N++ VI R++ + REN R Sbjct: 121 VQKVREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDR++ +YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRA Sbjct: 181 PGDRIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 241 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVA 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + Sbjct: 301 SIVVDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHA 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L Sbjct: 361 AIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAAL 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + + ++ + +++L ++ G++ + L G+ T+EDLA +DDL G S Sbjct: 421 TTLALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLS 480 Query: 475 ENKGGNI 481 + + G + Sbjct: 481 DEQAGEL 487 >gi|114331633|ref|YP_747855.1| transcription elongation factor NusA [Nitrosomonas eutropha C91] gi|114308647|gb|ABI59890.1| NusA antitermination factor [Nitrosomonas eutropha C91] Length = 490 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/466 (43%), Positives = 310/466 (66%), Gaps = 4/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG+ FR Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHARDDIDVRVSIDRDTGEFQCFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V + VE+ QI+L A ++P G + + + F R+ Q+AKQVI QK+R+A Sbjct: 64 IVADDVVEHPERQIALVEAVKQNPQSVPGEYTEELMEDVTFDRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ ++SG +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y Sbjct: 124 EREQNLNDFLERGEYLVSGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT F+VKLF +EVPEI GI++++A +RDPGSRAK+AV S+D Sbjct: 184 LLKIDRAVRGPQLVLSRTSADFLVKLFELEVPEIEEGILEIRAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DP+G CVGMRGSRVQAV EL E++DI+ WS D ATFV+NAL PA+++ +V+DED Sbjct: 244 ARVDPIGTCVGMRGSRVQAVTGELAGERVDIIQWSDDQATFVVNALAPAVISSIVMDEDK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +E L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ + FM+ Sbjct: 304 HSMDVVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTVEESHEKSEEEAASICELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I + Sbjct: 364 LDVDEEVGRILVDEGFSTLEEIAYIPIEEMLEIQEFDHETIEELRNRARNVLLTAAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +KI SE L ++ G+D + L GI T E+LA + DDL+ Sbjct: 424 EKIGH--ASEALLALEGMDIDLVRELAAKGISTQEELADLAADDLV 467 >gi|330958050|gb|EGH58310.1| transcription elongation factor NusA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 493 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/462 (42%), Positives = 312/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRMRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|332290219|ref|YP_004421071.1| transcription elongation factor NusA [Gallibacterium anatis UMN179] gi|330433115|gb|AEC18174.1| transcription elongation factor NusA [Gallibacterium anatis UMN179] Length = 495 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/464 (41%), Positives = 303/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + ++ + + Y D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESALAISTKKKYEQDIDVRVSIDQKTGDFVTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T +I+L+ A+ +P I +G + D + + F R+ +Q+ +QVI K+R+AER Sbjct: 64 VVENVTHPTKEITLEAAQIEEPEIQLGEYIEDEIESIPFDRITMQTVRQVISAKIRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +FK++ GEII+G VK+V NVI+DLGN ++ +I R++ + REN R GDRV+ + Sbjct: 124 NKVVEQFKEREGEIITGIVKKVNRENVILDLGNQAEAIILREDLLPRENFRAGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V + +GPQ+ ++R+ P+ +++LF +EVPEI G++++KA +RD G RAK+AV S D Sbjct: 184 YRVSSDPKGPQLFVTRSKPEMLIELFKIEVPEIGEGVIEIKAATRDAGVRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELDGERVDIVLWDDNPAQFVINAMAPADVVSIVVDEDKK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNV LAS+LTGW +++++ +E Q + + FM+++ Sbjct: 304 SMDIAVEAANLAQAIGRNGQNVNLASRLTGWKLNVMSSDELENKHQLENQKTVNLFMESL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A+LL EGF +EE+A V E+ I+GFDE+ A E++ RA+E L I + ++ Sbjct: 364 DLDEEFANLLTEEGFRTLEEIAYVPTEELLEIDGFDEDLAEELRNRAKEVLTKIALAEEQ 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + V E L + G++ + V L E I T+E+LA VDDL Sbjct: 424 ALANIDVEEALLKLDGMNRHLAVKLAEKKITTLEELAEQGVDDL 467 >gi|254284119|ref|ZP_04959087.1| N utilization substance protein A [gamma proteobacterium NOR51-B] gi|219680322|gb|EED36671.1| N utilization substance protein A [gamma proteobacterium NOR51-B] Length = 499 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/472 (43%), Positives = 318/472 (67%), Gaps = 13/472 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ AA+ Y SDI V+I+ ETGD R Sbjct: 4 EILMVAEAVSNEKGVSEDIIFEAIELALATAAKKRYDEESDIEVQIDRETGDYVTTRRWL 63 Query: 68 VVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + E +T + +++V + P G V + + +DFGR+A Q+AKQVI+Q+ Sbjct: 64 VVPDSELALLGTQFTTEEAIEVNAELKP----GDVHEEVVDNVDFGRIAAQTAKQVIVQR 119 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VR+AER + +++ +VGE+++GTVK+V NVIVDLG N++G++ R E + RE R D Sbjct: 120 VRDAERAQIVEQYQSRVGELLAGTVKKVTRDNVIVDLGGNAEGLLPRTELVGRETFRIND 179 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ + ++ E RGPQ++LSR + +++LF +EVPEI G++Q++A +RDPGSRAK+A Sbjct: 180 RVRAILTEINTESRGPQLILSRACKEMLIELFKIEVPEIAEGVIQIRAAARDPGSRAKIA 239 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVGMRGSRVQAV EL +E++DI++W ++A VINA+ PA V +V Sbjct: 240 VKTGDQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNAAQLVINAMSPAEVESIV 299 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK-DFNERT 359 +DED +EV V ++ L+ AIGR GQNVRLAS LT WTI++++ +D+I +Q+ + + Sbjct: 300 VDEDSNTMEVAVAEDNLAQAIGRGGQNVRLASDLTEWTINVMS-VDDAIEKQEAEAIQVM 358 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A++VDE +A +LV EGF +EE+A V + E+ SIEGFDE+ + E++ RA++ L Sbjct: 359 ETFMNALDVDEDVAGVLVEEGFTTLEEVAYVPLEEMMSIEGFDEDISEELRARAKDALLT 418 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + I ++++ +E+L ++ G++ + L GI TMEDLA VDD++ Sbjct: 419 MAIASEEQLGANEPAEDLLAMEGMERHLAFVLASRGIVTMEDLAEQGVDDIM 470 >gi|120597899|ref|YP_962473.1| transcription elongation factor NusA [Shewanella sp. W3-18-1] gi|146293929|ref|YP_001184353.1| transcription elongation factor NusA [Shewanella putrefaciens CN-32] gi|120557992|gb|ABM23919.1| NusA antitermination factor [Shewanella sp. W3-18-1] gi|145565619|gb|ABP76554.1| NusA antitermination factor [Shewanella putrefaciens CN-32] Length = 499 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 308/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRRWM 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 INSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + S+EL ++ G++ + L GI T+EDLA +DD Sbjct: 424 ASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDD 470 >gi|213052982|ref|ZP_03345860.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 495 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/481 (40%), Positives = 310/481 (64%), Gaps = 9/481 (1%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR +V Sbjct: 1 MAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIV 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 61 EEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 120 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVK 183 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ Sbjct: 121 VVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIR 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV + Sbjct: 181 GVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DE Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F Sbjct: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFT 360 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 361 KYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQD 420 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G Sbjct: 421 QEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGE 480 Query: 481 I 481 + Sbjct: 481 L 481 >gi|51594831|ref|YP_069022.1| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 32953] gi|108806045|ref|YP_649961.1| transcription elongation factor NusA [Yersinia pestis Antiqua] gi|108813401|ref|YP_649168.1| transcription elongation factor NusA [Yersinia pestis Nepal516] gi|145600793|ref|YP_001164869.1| transcription elongation factor NusA [Yersinia pestis Pestoides F] gi|153947426|ref|YP_001402551.1| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 31758] gi|153997274|ref|ZP_02022374.1| N utilization substance protein A [Yersinia pestis CA88-4125] gi|162418514|ref|YP_001608285.1| transcription elongation factor NusA [Yersinia pestis Angola] gi|165925730|ref|ZP_02221562.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. F1991016] gi|165936779|ref|ZP_02225346.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. IP275] gi|166010132|ref|ZP_02231030.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214620|ref|ZP_02240655.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401309|ref|ZP_02306809.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420758|ref|ZP_02312511.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423617|ref|ZP_02315370.1| transcription termination factor NusA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025946|ref|YP_001722451.1| transcription elongation factor NusA [Yersinia pseudotuberculosis YPIII] gi|186893840|ref|YP_001870952.1| transcription elongation factor NusA [Yersinia pseudotuberculosis PB1/+] gi|218930511|ref|YP_002348386.1| transcription elongation factor NusA [Yersinia pestis CO92] gi|229839149|ref|ZP_04459308.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896638|ref|ZP_04511805.1| transcription termination/antitermination L factor [Yersinia pestis Pestoides A] gi|229899713|ref|ZP_04514854.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903875|ref|ZP_04518988.1| transcription termination/antitermination L factor [Yersinia pestis Nepal516] gi|270489135|ref|ZP_06206209.1| transcription termination factor NusA [Yersinia pestis KIM D27] gi|294505370|ref|YP_003569432.1| transcription elongation factor NusA [Yersinia pestis Z176003] gi|51588113|emb|CAH19719.1| N utilization substance protein A [Yersinia pseudotuberculosis IP 32953] gi|108777049|gb|ABG19568.1| N utilization substance protein A [Yersinia pestis Nepal516] gi|108777958|gb|ABG12016.1| N utilization substance protein A [Yersinia pestis Antiqua] gi|115349122|emb|CAL22085.1| N utilization substance protein A [Yersinia pestis CO92] gi|145212489|gb|ABP41896.1| N utilization substance protein A [Yersinia pestis Pestoides F] gi|149288911|gb|EDM38991.1| N utilization substance protein A [Yersinia pestis CA88-4125] gi|152958921|gb|ABS46382.1| transcription termination factor NusA [Yersinia pseudotuberculosis IP 31758] gi|162351329|gb|ABX85277.1| transcription termination factor NusA [Yersinia pestis Angola] gi|165915428|gb|EDR34038.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. IP275] gi|165922342|gb|EDR39519.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991039|gb|EDR43340.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204195|gb|EDR48675.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961564|gb|EDR57585.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049334|gb|EDR60742.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057787|gb|EDR67533.1| transcription termination factor NusA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752480|gb|ACA69998.1| NusA antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186696866|gb|ACC87495.1| NusA antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229679645|gb|EEO75748.1| transcription termination/antitermination L factor [Yersinia pestis Nepal516] gi|229687205|gb|EEO79280.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. India 195] gi|229695515|gb|EEO85562.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700416|gb|EEO88448.1| transcription termination/antitermination L factor [Yersinia pestis Pestoides A] gi|262363436|gb|ACY60157.1| transcription elongation factor NusA [Yersinia pestis D106004] gi|262367189|gb|ACY63746.1| transcription elongation factor NusA [Yersinia pestis D182038] gi|270337639|gb|EFA48416.1| transcription termination factor NusA [Yersinia pestis KIM D27] gi|294355829|gb|ADE66170.1| transcription elongation factor NusA [Yersinia pestis Z176003] gi|320013700|gb|ADV97271.1| transcription termination/antitermination L factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/478 (41%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +G+I++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + + Sbjct: 304 TMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +++L ++ G++ + L G+ T+EDLA +DDL G S+ + G + Sbjct: 424 SFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGEL 481 >gi|153001790|ref|YP_001367471.1| transcription elongation factor NusA [Shewanella baltica OS185] gi|160876524|ref|YP_001555840.1| transcription elongation factor NusA [Shewanella baltica OS195] gi|217972314|ref|YP_002357065.1| transcription elongation factor NusA [Shewanella baltica OS223] gi|304410266|ref|ZP_07391885.1| transcription termination factor NusA [Shewanella baltica OS183] gi|307302023|ref|ZP_07581781.1| transcription termination factor NusA [Shewanella baltica BA175] gi|151366408|gb|ABS09408.1| NusA antitermination factor [Shewanella baltica OS185] gi|160862046|gb|ABX50580.1| NusA antitermination factor [Shewanella baltica OS195] gi|217497449|gb|ACK45642.1| NusA antitermination factor [Shewanella baltica OS223] gi|304351675|gb|EFM16074.1| transcription termination factor NusA [Shewanella baltica OS183] gi|306914061|gb|EFN44482.1| transcription termination factor NusA [Shewanella baltica BA175] gi|315268718|gb|ADT95571.1| NusA antitermination factor [Shewanella baltica OS678] Length = 499 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 308/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRRWM 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+D+ GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVELF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 VNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + SEEL ++ G+D + GI T+EDLA +DD Sbjct: 424 ATEEALDGVEPSEELLALEGVDRHLAYVFASKGIVTLEDLAEQGIDD 470 >gi|90022354|ref|YP_528181.1| transcription elongation factor NusA [Saccharophagus degradans 2-40] gi|89951954|gb|ABD81969.1| transcription termination factor NusA [Saccharophagus degradans 2-40] Length = 493 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 314/467 (67%), Gaps = 6/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAV+ EK +D+ ++ + ++ A + Y +DI+V I+ + GD R Sbjct: 4 EILLVADAVSNEKGVDKGIIFEAIELALASATKKRYDEDADIKVTIDRKDGDYVTVRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++ + Q + + A ++DPS+ G V + + +DFGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDDDTLAELGTQFTTEEAIEKDPSLKPGDVYEEVIENVDFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + E++ +VGE+I+GTVK+V N+IVDLG N++G++ R+E + RE R DRV++ Sbjct: 124 ERAQIVDEYRGRVGELIAGTVKKVTRDNIIVDLGGNAEGLLPREELVGREVFRMNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + DVR E RGPQ+ LSR P+ +++LF +EVPEI ++ + A +RDPGSRAK+AV ++ Sbjct: 184 VLADVRPEARGPQLFLSRACPEMLIELFKIEVPEIAEEVISLNAAARDPGSRAKIAVATN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E+IDI++W + A FVINA+ PA + +V+DE+ Sbjct: 244 DGRIDPVGACVGMRGSRVQAVSNELGNERIDIILWDDNPAQFVINAMAPAEIESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 G ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ ++ + + + F+ Sbjct: 304 AGSMDVAVAEDNLAQAIGRGGQNVRLASELTGWEINVMSVDQWNEKQAAEAGSARDVFIN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+++DE +A +LV EGF +EE+A V + E +IEGFDEE A E++ RA++ L + Sbjct: 364 ALDIDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEEIAEELRNRAKDALLTQALAG 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K + +++L ++ G+D + L G+ MEDLA +VD+L+ Sbjct: 424 EEKNQP---ADDLVNMEGMDDALAQTLAARGVICMEDLAEQAVDELM 467 >gi|27365056|ref|NP_760584.1| transcription elongation factor NusA [Vibrio vulnificus CMCP6] gi|37680893|ref|NP_935502.1| transcription elongation factor NusA [Vibrio vulnificus YJ016] gi|320155440|ref|YP_004187819.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O] gi|27361202|gb|AAO10111.1| Transcription termination protein NusA [Vibrio vulnificus CMCP6] gi|37199642|dbj|BAC95473.1| n utilization substance protein A [Vibrio vulnificus YJ016] gi|319930752|gb|ADV85616.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O] Length = 495 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/482 (41%), Positives = 313/482 (64%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN T +IS + A D S+ +G + + + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVENPTKEISFEAANYDDESVQLGDFIEEEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDR 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V L+ AIGR GQNVRLASQLTGW ++++T E + QK E +Q F Sbjct: 304 SMDIAVEAGNLAQAIGRNGQNVRLASQLTGWELNVMTVE----DLQKKHAEESQASIDNF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ +EG DE+ E++ RA++ L I + Sbjct: 360 MKYLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVEGLDEDLIEELRSRAKDALTTIAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGG 479 ++ + +E+L ++ G++ ++ L G+ ++EDLA +DDL G +E + G Sbjct: 420 AREESFEGVEPAEDLLNLEGLEREMAFKLAAKGVASLEDLADQGIDDLEGIDGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 QL 481 >gi|15836839|ref|NP_297527.1| transcription elongation factor NusA [Xylella fastidiosa 9a5c] gi|9105045|gb|AAF83047.1|AE003877_2 N utilization substance protein A [Xylella fastidiosa 9a5c] Length = 503 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 313/470 (66%), Gaps = 7/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ ++G+ +R Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRYQD-RDILTRVTIDQKSGNYETYRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++ Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + + Sbjct: 303 DEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 363 FMERLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ Sbjct: 423 LAEEEGLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIV 472 >gi|332528133|ref|ZP_08404164.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2] gi|332112704|gb|EGJ12497.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2] Length = 492 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/470 (42%), Positives = 316/470 (67%), Gaps = 6/470 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR E+L + DA++ EK++DRDVV + ++ A + L+G DIRV ++ ETG+ FR Sbjct: 2 NR-EMLMLVDAISREKTVDRDVVFGAVEAALASATKKLHGGEVDIRVAVDRETGEYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV ++N ++ L A+++ I++ + + + + GR+ Q+AKQVI+QK Sbjct: 61 RWHVVPNEAGLQNADAEVLLFEAQEQIADIEVDDYIEESVDSVPIGRIGAQAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER++ +F + +I GTVKR++ G++IV+ G +G ++R E I +ENLR GDR Sbjct: 121 IRDAEREQLLNDFLARGDKIFVGTVKRLDKGDIIVESGRVEGRLKRSEMIPKENLRSGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+++I V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAFILGVDPTQRGPQIMLSRSAPGFMVELFGQEVPEIELGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RGSRV V TEL E++DIV+WS D A FVI AL PA V +V+ Sbjct: 241 VSHDRRVDPIGTCVGVRGSRVNGVTTELAGERVDIVLWSEDPAQFVIGALAPANVQSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + Sbjct: 301 DEERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATETESVRKI 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++ ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L + Sbjct: 361 FVEKLDVDEEVADILIAEGFTSLEEVAYVPLQEMLEIEAFDEDTVQELRTRAKDAL--LT 418 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + ++++ + VS++L + G+ ++ L + G+ T +DLA +VD+L+ Sbjct: 419 MEIEREEKVEEVSQDLRDLEGLTPELIGKLSDGGVNTRDDLADLAVDELV 468 >gi|89072574|ref|ZP_01159146.1| transcription elongation factor NusA [Photobacterium sp. SKA34] gi|89051678|gb|EAR57131.1| transcription elongation factor NusA [Photobacterium sp. SKA34] Length = 495 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + + ++RV I+ +TG+ FR + Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIEVRVAIDRKTGEFETFRRWK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEV T +I+L+ A+ DP+I G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVTQPTLEITLEAAQFEDPTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+I+G VK+V VI+DLG N++ VI+RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELITGIVKKVNRDAVIIDLGSNAEAVIQRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFMTRSKPEMLCELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENPAQYVINAMAPAEVDSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + + Sbjct: 304 TMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF +EE+A V +SE+ ++G DEET +++ RA+ L + + ++ Sbjct: 364 DIDEDFATVLVEEGFTTLEEIAYVPLSELMDVDGLDEETIDQLRSRAKAALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L + G++ ++ GI T+EDLA DDL G + K G + Sbjct: 424 TLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIEGVDDAKAGEL 481 >gi|323495468|ref|ZP_08100543.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326] gi|323319465|gb|EGA72401.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326] Length = 495 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/482 (40%), Positives = 313/482 (64%), Gaps = 12/482 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+VEN T +ISL+ A+ + +++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEDVENPTKEISLEAAKFENEELELGDYVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + QK E +Q F Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMT----VADLQKKHAEESQAAIEGF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + Sbjct: 360 MKHLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKGG 479 ++ + +E+L + G++ ++ L G+ T+EDLA +D D+ G +E + G Sbjct: 420 AQEESFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEDIEGLTEERAG 479 Query: 480 NI 481 + Sbjct: 480 EL 481 >gi|260771174|ref|ZP_05880101.1| transcription termination protein NusA [Vibrio furnissii CIP 102972] gi|260613771|gb|EEX38963.1| transcription termination protein NusA [Vibrio furnissii CIP 102972] gi|315179220|gb|ADT86134.1| transcription elongation factor NusA [Vibrio furnissii NCTC 11218] Length = 495 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 312/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ + FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFNTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN T +ISL+ A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVENPTKEISLEAAVYDDESVKLGDFIEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V VI+DLG N++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTVILDLGSNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELCGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V + E+ ++G DE+ E++ RA++ L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPVHELLEVDGLDEDLVEELRTRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +E+L ++ G++ ++ L G+ T+EDLA +DDL G +E + G + Sbjct: 424 SYEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAGEL 481 >gi|84387286|ref|ZP_00990307.1| transcription elongation factor NusA [Vibrio splendidus 12B01] gi|84377933|gb|EAP94795.1| transcription elongation factor NusA [Vibrio splendidus 12B01] Length = 495 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/466 (41%), Positives = 308/466 (66%), Gaps = 1/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR E Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++D Sbjct: 184 YAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + ++ Sbjct: 364 DIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 424 TFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEG 469 >gi|227327826|ref|ZP_03831850.1| transcription elongation factor NusA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 509 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/477 (42%), Positives = 305/477 (63%), Gaps = 14/477 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQK 353 +DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Q Sbjct: 304 VDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKHQA 363 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++ RA Sbjct: 364 EAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRERA 423 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + L + + ++ + + +E+L +PG+ ++ L G+ T+EDLA VDDL Sbjct: 424 KAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 >gi|213852790|ref|ZP_03382322.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 485 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/469 (41%), Positives = 305/469 (65%), Gaps = 6/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 424 QDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDL 472 >gi|86148618|ref|ZP_01066901.1| transcription elongation factor NusA [Vibrio sp. MED222] gi|218710446|ref|YP_002418067.1| transcription elongation factor NusA [Vibrio splendidus LGP32] gi|85833609|gb|EAQ51784.1| transcription elongation factor NusA [Vibrio sp. MED222] gi|218323465|emb|CAV19642.1| Transcription elongation protein nusA [Vibrio splendidus LGP32] Length = 495 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/466 (41%), Positives = 308/466 (66%), Gaps = 1/466 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR E Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++D Sbjct: 184 YAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + ++ Sbjct: 364 DIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 424 TFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEG 469 >gi|222110449|ref|YP_002552713.1| nusa antitermination factor [Acidovorax ebreus TPSY] gi|221729893|gb|ACM32713.1| NusA antitermination factor [Acidovorax ebreus TPSY] Length = 494 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 314/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIDRDSGEYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK Sbjct: 61 RWLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + VS++L + G+ ++ L E G+ T +DLA ++D+L Sbjct: 421 IVREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDEL 467 >gi|68250159|ref|YP_249271.1| transcription elongation factor NusA [Haemophilus influenzae 86-028NP] gi|145629346|ref|ZP_01785145.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|145638849|ref|ZP_01794457.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|68058358|gb|AAX88611.1| transcription elongation protein NusA [Haemophilus influenzae 86-028NP] gi|144978849|gb|EDJ88572.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|145271821|gb|EDK11730.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|309750830|gb|ADO80814.1| Transcription elongation factor NusA [Haemophilus influenzae R2866] Length = 495 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/465 (40%), Positives = 314/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 468 >gi|104780027|ref|YP_606525.1| transcription elongation factor NusA [Pseudomonas entomophila L48] gi|95109014|emb|CAK13710.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Pseudomonas entomophila L48] Length = 493 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 305/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E +++ + L +D P IG V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDENDLDDPAIETWLSKIQDTHPDAKIGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLVLSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLT WT++++TE++ +Q + + + F+ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTAWTLNVMTEKDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +++L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPADDLLSLEGMDKDLAAELAVRGVVNREDLAEQS 465 >gi|329896244|ref|ZP_08271422.1| Transcription termination protein NusA [gamma proteobacterium IMCC3088] gi|328921915|gb|EGG29282.1| Transcription termination protein NusA [gamma proteobacterium IMCC3088] Length = 496 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/467 (42%), Positives = 316/467 (67%), Gaps = 3/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ A + Y SDI V IN +TGD R Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIELALATATKKRYDEDSDIHVTINRKTGDYVTVRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +E+ Q++ + A ++DPS+ G V + + + FGR+A Q+AKQVI+Q+VREA Sbjct: 64 VVPDDELALLGTQLTTEEAIEKDPSLVPGDVFEETVENVGFGRIAAQTAKQVIVQRVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++ +VGE+++G+VK+V N+IVDLGN ++G++ R + RE R DR+++ Sbjct: 124 ERAQIVDQYRGRVGELVAGSVKKVTRDNIIVDLGNNAEGLLPRGNLVGRETFRVNDRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR+ + +++LF +EVPEI G++Q++A +RDPGSRAK+AV ++ Sbjct: 184 ILTEISTEIRGPQLILSRSCSEMLIELFRIEVPEIAEGVIQIRAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ EE ++ + + Q F++ Sbjct: 304 THTMDVAVSEDNLAQAIGRSGQNVRLASELTGWMINVMSTEEAQEKQEAEVGQVLQLFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE + E++ RA++ L + I Sbjct: 364 RLDVDEDVAEVLVEEGFTTLEEVAYVPLEEMMAIEGFDEEISEELRARAKDALLTMAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++++ +++L ++ G+D + L GI TMEDLA VDDL+ Sbjct: 424 EEQLGANEPADDLLNMEGMDRHLAFILASRGIVTMEDLAEQGVDDLM 470 >gi|319427306|gb|ADV55380.1| NusA antitermination factor [Shewanella putrefaciens 200] Length = 499 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 308/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRRWM 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+ E +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VIDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + + Sbjct: 364 INSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + S+EL ++ G++ + L GI T+EDLA +DD Sbjct: 424 ASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDD 470 >gi|161830897|ref|YP_001597277.1| transcription elongation factor NusA [Coxiella burnetii RSA 331] gi|161762764|gb|ABX78406.1| transcription termination factor NusA [Coxiella burnetii RSA 331] Length = 503 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/470 (43%), Positives = 319/470 (67%), Gaps = 8/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 4 DILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFRCW 63 Query: 67 EVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+QKV Sbjct: 64 TVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +++ +VGE++ G VKRV ++I+D+G N++ ++ R+E I RE R DR Sbjct: 124 REAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRINDR 183 Query: 182 VKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++Y+Y V + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK+A Sbjct: 184 LRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V +V Sbjct: 244 VKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ ++ Sbjct: 304 VDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEADKIKT 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 364 AFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLLTQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +I Q ++ E +E+L ++PG+ +++ L EN + T +DLA SV DL Sbjct: 424 EIAKQ-ELDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDL 472 >gi|330895306|gb|EGH27644.1| transcription elongation factor NusA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 493 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/462 (42%), Positives = 311/462 (67%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ A GR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQASGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS 465 >gi|121594900|ref|YP_986796.1| NusA antitermination factor [Acidovorax sp. JS42] gi|120606980|gb|ABM42720.1| NusA antitermination factor [Acidovorax sp. JS42] Length = 494 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 313/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I ++G+ FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIERDSGEYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK Sbjct: 61 RWLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + VS++L + G+ ++ L E G+ T +DLA ++D+L Sbjct: 421 IVREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDEL 467 >gi|253686985|ref|YP_003016175.1| NusA antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753563|gb|ACT11639.1| NusA antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 509 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/491 (41%), Positives = 311/491 (63%), Gaps = 17/491 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ D S+D+GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEDSSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQK 353 +DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Q Sbjct: 304 VDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKHQA 363 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++ RA Sbjct: 364 EAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRERA 423 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-- 471 + L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 424 KAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLTDI 483 Query: 472 -GWSENKGGNI 481 G ++ + G + Sbjct: 484 EGLNDEQAGEL 494 >gi|322514415|ref|ZP_08067458.1| N utilization substance A [Actinobacillus ureae ATCC 25976] gi|322119663|gb|EFX91721.1| N utilization substance A [Actinobacillus ureae ATCC 25976] Length = 493 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/465 (41%), Positives = 307/465 (66%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFNRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN R GDRV+ + Sbjct: 124 NKVIDQFRSQLNTIITATVKKVNRDQIILDLGNQAEAVIVREDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFVTRAKPIMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ ++ Sbjct: 304 AMDIAVESKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVIDLFVTSL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +D+ A +LV EGF+ +EELA + +SE+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 EIDQEFAQILVDEGFSSLEELAFIPVSELTAIDGLEDEDLVEELQTRAKNVITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G+D I L E GI T+E+LA + DDL Sbjct: 424 EALQQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDL 468 >gi|319762633|ref|YP_004126570.1| transcription termination factor nusa [Alicycliphilus denitrificans BC] gi|330824723|ref|YP_004388026.1| NusA antitermination factor [Alicycliphilus denitrificans K601] gi|317117194|gb|ADU99682.1| transcription termination factor NusA [Alicycliphilus denitrificans BC] gi|329310095|gb|AEB84510.1| NusA antitermination factor [Alicycliphilus denitrificans K601] Length = 494 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 315/469 (67%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVVL + ++ +A + LY D+RV I+ ++GD FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGDVDLRVSIDRDSGDYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L AR+R P I++G + +P+ + GR+ +AKQVI+QK Sbjct: 61 RWLVVPDDAGLQNPDAEELLMDARERVPDIEVGEYIEEPVESVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I +GTVKR++ G++I++ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGEKIFTGTVKRMDKGDLIIESGRVEGRLRRSEMIPKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVQSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETDAARRL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIADILIAEGFESLEEVAYVPLQEMLEIESFDEDTVNELRVRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + VS++L + G+ ++ L + G+ T +DLA ++D+L Sbjct: 421 IAREESMG--SVSQDLRDLEGLTPELIAKLADAGVNTRDDLADLAIDEL 467 >gi|29654724|ref|NP_820416.1| transcription elongation factor NusA [Coxiella burnetii RSA 493] gi|81628742|sp|Q83BS0|NUSA_COXBU RecName: Full=Transcription elongation protein nusA gi|29541992|gb|AAO90930.1| N utilization substance protein A [Coxiella burnetii RSA 493] Length = 503 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/470 (43%), Positives = 318/470 (67%), Gaps = 8/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 4 DILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFRCW 63 Query: 67 EVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+QKV Sbjct: 64 TVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +++ +VGE++ G VKRV ++I+D+G N++ ++ R+E I RE R DR Sbjct: 124 REAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRINDR 183 Query: 182 VKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++Y+Y V + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK+A Sbjct: 184 LRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V +V Sbjct: 244 VKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ + Sbjct: 304 VDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKIKT 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 364 AFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLLTQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +I Q ++ E +E+L ++PG+ +++ L EN + T +DLA SV DL Sbjct: 424 EIAKQ-ELDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDL 472 >gi|330722350|gb|EGH00207.1| Transcription termination protein NusA [gamma proteobacterium IMCC2047] Length = 503 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/485 (42%), Positives = 317/485 (65%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT--MSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + V++ + ++ A R YG DIRV I+ TGD +R Sbjct: 4 EVLLVAEAVSNEKGVPESVIIEALELALATATRKRYGEDEQVDIRVTIDRRTGDYESYRR 63 Query: 66 LEVVEE----VENY-TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 V+ + +E + T ++ A+ +D S+++G V + + ++FGR+A Q+AKQVI+Q Sbjct: 64 WTVISDDDMDIEFHDTMHLTPAEAKKKDASLEVGDVWEEQIENVEFGRIAAQTAKQVIVQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVREAER + ++D+VGE+++GTVK+V VI+DLGN ++ + RD I +E R Sbjct: 124 KVREAERAKVVEAYRDRVGEVLNGTVKKVTRDQVIIDLGNNAEAQLTRDHLIPKEIFRMN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++ + V E RGPQ+++SRT P+F+++LF +EVPEI +V+++A +RD G+RAK+ Sbjct: 184 DRLRALLVSVGEETRGPQLVVSRTAPEFLIELFKIEVPEIAEQVVEIRAAARDAGTRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A VINAL PA V + Sbjct: 244 AVKTNDGRIDPVGACVGMRGSRVQAVSNELAGERIDIVLWDDNPAQMVINALAPAEVESI 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DE+ ++V V + L++AIGR GQNVRLAS+LTGWTI+++T E+ ++++ Sbjct: 304 IMDEESNTMDVAVSGDNLAIAIGRSGQNVRLASELTGWTINVMTAEDAEAKQEEEMVAII 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ ++V+E +A LLV EGF +EE+A V I E+ I+GFDEE ++ RA++ L Sbjct: 364 ERFMERLDVEEDLAVLLVEEGFTSLEEIAYVPIEEMLEIDGFDEEIVEALRLRAKDVLLT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I ++++ +++L + G+D + L G+ TMEDLA +VDDLL G E Sbjct: 424 QAIASEEELEGTEPAQDLLEMDGMDKHLAYVLASKGVITMEDLAEQAVDDLLGIEGLDEE 483 Query: 477 KGGNI 481 + N+ Sbjct: 484 RAANL 488 >gi|71276363|ref|ZP_00652640.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Dixon] gi|71901435|ref|ZP_00683525.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|170729432|ref|YP_001774865.1| transcription elongation factor NusA [Xylella fastidiosa M12] gi|71162825|gb|EAO12550.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Dixon] gi|71728806|gb|EAO30947.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|167964225|gb|ACA11235.1| N utilization substance protein A [Xylella fastidiosa M12] Length = 503 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 311/470 (66%), Gaps = 7/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ +R Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRYQD-RDILTRVTIDQKNGNYETYRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++ Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + + Sbjct: 303 DEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 363 FMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ Sbjct: 423 LAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIV 472 >gi|167856225|ref|ZP_02478960.1| translation initiation factor IF-2 [Haemophilus parasuis 29755] gi|167852645|gb|EDS23924.1| translation initiation factor IF-2 [Haemophilus parasuis 29755] Length = 510 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/482 (40%), Positives = 313/482 (64%), Gaps = 19/482 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVL----SVMADSIQKAA-------RSLYGTMSDIRVEINPE 56 E+L A+AV+ EK + +D + + +A S +K A ++ G D+RV I+ + Sbjct: 4 EILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVIDRK 63 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A+Q Sbjct: 64 TGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTARQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDE 169 VI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R++ Sbjct: 124 VITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVRED 183 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K Sbjct: 184 MLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIKGA 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+IN Sbjct: 244 SRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFLIN 303 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDELEK 363 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-E 408 Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G ++E V E Sbjct: 364 KHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLVEE 423 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 +Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA SVD Sbjct: 424 LQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQSVD 483 Query: 469 DL 470 DL Sbjct: 484 DL 485 >gi|241662813|ref|YP_002981173.1| transcription elongation factor NusA [Ralstonia pickettii 12D] gi|309782264|ref|ZP_07676992.1| transcription termination/antitermination protein NusA [Ralstonia sp. 5_7_47FAA] gi|240864840|gb|ACS62501.1| NusA antitermination factor [Ralstonia pickettii 12D] gi|308918957|gb|EFP64626.1| transcription termination/antitermination protein NusA [Ralstonia sp. 5_7_47FAA] Length = 491 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/502 (40%), Positives = 327/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L A++++P +D+ V + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQNPDLDVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L + + L Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVL--LTMEL 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K+ R VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 422 AKEERVEKVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|28198121|ref|NP_778435.1| transcription elongation factor NusA [Xylella fastidiosa Temecula1] gi|71898654|ref|ZP_00680824.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|182680749|ref|YP_001828909.1| transcription elongation factor NusA [Xylella fastidiosa M23] gi|28056181|gb|AAO28084.1| N utilization substance protein A [Xylella fastidiosa Temecula1] gi|71731601|gb|EAO33662.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|182630859|gb|ACB91635.1| NusA antitermination factor [Xylella fastidiosa M23] gi|307579213|gb|ADN63182.1| transcription elongation factor NusA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 503 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 311/470 (66%), Gaps = 7/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ +R Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRYQD-RDILTRVTIDQKNGNYETYRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++ Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + + Sbjct: 303 DEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQLAARRL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 363 FMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ Sbjct: 423 LAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIV 472 >gi|515637|gb|AAA20049.1| transcription factor [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 500 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/483 (40%), Positives = 311/483 (64%), Gaps = 9/483 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMR +RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRRARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + Sbjct: 304 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEI 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 364 FTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKG 478 + + + +++L ++ G+D + L G+ T+EDLA +D D+ G ++ K Sbjct: 424 QDQEASLGDNKPADDLLNLEGVDRDMAFKLAARGVCTLEDLAQQGIDHLADIEGLTDEKA 483 Query: 479 GNI 481 G + Sbjct: 484 GAL 486 >gi|145637799|ref|ZP_01793448.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] gi|145268992|gb|EDK08946.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] Length = 495 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 313/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMITREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ + L E I T+E+LA VDDL Sbjct: 424 EALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDL 468 >gi|1075364|pir||D64114 transcription termination-antitermination factor nusA - Haemophilus influenzae (strain Rd KW20) Length = 507 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 313/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 16 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 76 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 136 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 195 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 196 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 255 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 256 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 315 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 316 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 375 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 376 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 435 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 436 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 480 >gi|145630836|ref|ZP_01786614.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|145633248|ref|ZP_01788979.1| transcription elongation factor NusA [Haemophilus influenzae 3655] gi|145634372|ref|ZP_01790082.1| transcription elongation factor NusA [Haemophilus influenzae PittAA] gi|145641320|ref|ZP_01796899.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|148825866|ref|YP_001290619.1| transcription elongation factor NusA [Haemophilus influenzae PittEE] gi|229845094|ref|ZP_04465229.1| transcription elongation factor NusA [Haemophilus influenzae 6P18H1] gi|229846821|ref|ZP_04466928.1| transcription elongation factor NusA [Haemophilus influenzae 7P49H1] gi|144983718|gb|EDJ91178.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|144986094|gb|EDJ92684.1| transcription elongation factor NusA [Haemophilus influenzae 3655] gi|145268352|gb|EDK08346.1| transcription elongation factor NusA [Haemophilus influenzae PittAA] gi|145273863|gb|EDK13730.1| transcription elongation factor NusA [Haemophilus influenzae 22.4-21] gi|148716026|gb|ABQ98236.1| transcription elongation factor NusA [Haemophilus influenzae PittEE] gi|229810310|gb|EEP46029.1| transcription elongation factor NusA [Haemophilus influenzae 7P49H1] gi|229811930|gb|EEP47624.1| transcription elongation factor NusA [Haemophilus influenzae 6P18H1] gi|309973011|gb|ADO96212.1| Transcription elongation factor NusA [Haemophilus influenzae R2846] Length = 495 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 313/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ + L E I T+E+LA VDDL Sbjct: 424 EALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDL 468 >gi|239815725|ref|YP_002944635.1| NusA antitermination factor [Variovorax paradoxus S110] gi|239802302|gb|ACS19369.1| NusA antitermination factor [Variovorax paradoxus S110] Length = 494 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 311/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR Sbjct: 2 NR-EMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFR 60 Query: 65 LLEVVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + +I L A++ P I++G + + + + GR+ +AKQVI+QK Sbjct: 61 RWHVVPDEAGLQLPDQEILLFEAKEEMPDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQASETDASRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA +L++EGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + VS+ L + G+D ++ L E G+ T +DLA +VD+L Sbjct: 421 IAKEEGVE--TVSQNLRDLEGLDPELIPKLAEAGVHTRDDLADLAVDEL 467 >gi|94501385|ref|ZP_01307905.1| N utilization substance protein A [Oceanobacter sp. RED65] gi|94426498|gb|EAT11486.1| N utilization substance protein A [Oceanobacter sp. RED65] Length = 497 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/481 (42%), Positives = 319/481 (66%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK ++++V+ + ++ AA+ Y DIRV I+ +G+ +R Sbjct: 4 EILLVAEAVSNEKGVEKEVIFEAIELALAAAAKKRYEDEEPDIRVAIDRRSGEYETYRHW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E V +++++ A D D ++ G + + +FGR+A Q+AKQ+I+QKVRE Sbjct: 64 TIVSNEVVPALGSELNMQEAADIDTNLKEGDSYEEQIENPEFGRIAAQAAKQIIMQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + ++D++GE++ GTVK+V N+IVDLGN ++G++ R++ ++RE R GDR++ Sbjct: 124 AERAKITAAYEDRIGELVHGTVKKVTRDNIIVDLGNNAEGLLPREQLVAREVFRIGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V E RGPQ++LSR +++LF +EVPEI ++++KA +RDPGSRAK+AV S Sbjct: 184 AVLTSVNPENRGPQLILSRAAGSMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV EL +E++DIV+W + A VINAL PA V +V+DE Sbjct: 244 NDQRIDPVGACVGMRGARVQAVSNELGNERVDIVLWDDNPAQLVINALAPAEVESIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V ++QL++AIGR GQNV+LAS+LTGW I+++TEEE +Q++ Q M Sbjct: 304 ETNSMDVAVAEDQLAIAIGRGGQNVKLASELTGWVINVMTEEEAGEKQQQEQGSLVQKLM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 A+++DE +A +LV EGF ++E+A V E+ I+GFDEE E+Q RA++ L I Sbjct: 364 DALDIDEDMAAVLVGEGFTGLDEVAYVPREEMLEIDGFDEEVVDELQARAKDVLLTQAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD---LLGWSENKGGN 480 ++K+ + +E+L ++ G+D + + L +GI TMEDLA VDD L G E K Sbjct: 424 SEEKLEDAQPAEDLLNMEGMDQHLALVLASHGIVTMEDLAEQGVDDISSLEGLDEEKAAQ 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|325578298|ref|ZP_08148433.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392] gi|325160034|gb|EGC72163.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392] Length = 495 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/465 (41%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +++L+ A+ DP+I +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEMTLEAAQFEDPNIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+ + G+I++GTVK+V ++I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+D Sbjct: 184 YKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM + Sbjct: 304 SMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMDKL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V +SE+++I+G ++E + E+QGRA++ + + Sbjct: 364 GLDEEFAQILVDEGFTSLEEVAYVPVSELSAIDGLEDEDLIEELQGRAKDAITAAAAAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ I L E I T+E+LA VDDL Sbjct: 424 EALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDL 468 >gi|300691722|ref|YP_003752717.1| transcription termination/antitermination L factor [Ralstonia solanacearum PSI07] gi|299078782|emb|CBJ51442.1| transcription termination/antitermination L factor [Ralstonia solanacearum PSI07] Length = 491 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/502 (39%), Positives = 329/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + ++++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQEEESSAVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVEK--VSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|16273197|ref|NP_439435.1| transcription elongation factor NusA [Haemophilus influenzae Rd KW20] gi|260581405|ref|ZP_05849219.1| transcription termination factor NusA [Haemophilus influenzae RdAW] gi|260582501|ref|ZP_05850292.1| transcription termination factor NusA [Haemophilus influenzae NT127] gi|1171872|sp|P43915|NUSA_HAEIN RecName: Full=Transcription elongation protein nusA gi|1574741|gb|AAC22932.1| N utilization substance protein A (nusA) [Haemophilus influenzae Rd KW20] gi|260091947|gb|EEW75896.1| transcription termination factor NusA [Haemophilus influenzae RdAW] gi|260094481|gb|EEW78378.1| transcription termination factor NusA [Haemophilus influenzae NT127] Length = 495 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 313/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 468 >gi|146308624|ref|YP_001189089.1| transcription elongation factor NusA [Pseudomonas mendocina ymp] gi|145576825|gb|ABP86357.1| NusA antitermination factor [Pseudomonas mendocina ymp] Length = 493 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/462 (43%), Positives = 305/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ SI+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEEIVNELRARAKDRLLTKAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +++L + G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS 465 >gi|307256660|ref|ZP_07538439.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864708|gb|EFM96612.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 453 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/425 (44%), Positives = 288/425 (67%), Gaps = 2/425 (0%) Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFG 107 D+RV I+ +TGD FR VVE+V N T +ISL+ A+ +PS+ +G +V D + + F Sbjct: 4 DVRVVIDRKTGDFQTFRRWIVVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFD 63 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIR 166 R+ +Q+A+QVI K+REAER++ +F+ ++ II+ TVK+V +I+DLGN ++ VI Sbjct: 64 RITMQTARQVISTKIREAERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIV 123 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R++ + REN RPGDRV+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++ Sbjct: 124 REDMLPRENFRPGDRVRGVLYAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEI 183 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K SRDPGSRAK+AV S D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F Sbjct: 184 KGASRDPGSRAKIAVKSHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQF 243 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VINA+ PA V+ +V+DED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Sbjct: 244 VINAMAPAEVSAIVVDEDKHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTED 303 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEET 405 Q + N+ F+ A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE Sbjct: 304 LDKKHQAEDNKVISLFVSALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENL 363 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 A E+Q RA+ + + ++ +++ + + L ++ G+D I L E GI T+E+LA Sbjct: 364 AEELQTRAKNAITAKALAEEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQ 423 Query: 466 SVDDL 470 + DDL Sbjct: 424 ATDDL 428 >gi|167625060|ref|YP_001675354.1| transcription elongation factor NusA [Shewanella halifaxensis HAW-EB4] gi|167355082|gb|ABZ77695.1| NusA antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 499 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/467 (41%), Positives = 306/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIDSVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+D+ GE+I G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGDRV Sbjct: 124 EAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGNNADGVLFREDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESVKVVNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 +QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++GRA+ + + Sbjct: 364 IQALDVDEDFAQLLSDEGFTSLEEIAYVPESELLEIDGFDEDIVESLRGRAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + SE+L ++ G+D + + G+ T+EDLA +DD Sbjct: 424 ATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDD 470 >gi|109898014|ref|YP_661269.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c] gi|109700295|gb|ABG40215.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c] Length = 497 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/482 (42%), Positives = 309/482 (64%), Gaps = 9/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR Sbjct: 4 EILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVAIDRITGDFDTFRRWM 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ ++ EN ++++ A+ +P I +G V D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VIADDQKQENPFAEMTISAAQIDEPDIQLGDYVEDQIESIKFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + E++++VG++++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDRV+ Sbjct: 124 AERAQVMAEYEERVGDLVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFVSRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT-QFF 362 D ++V V + L+ AIGR GQNVRLA+QLTGW ++++T ED N+ + N + F Sbjct: 304 DNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMT-VEDLNNKHDEENSKVLAVF 362 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L + Sbjct: 363 VNGLDIDEEFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVDDLRSRARAALTTQAL 422 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKGG 479 ++ + EEL S+ G++ + L GI +E LA VD D+ E K G Sbjct: 423 ANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEELDEEKAG 482 Query: 480 NI 481 + Sbjct: 483 QL 484 >gi|260771815|ref|ZP_05880733.1| transcription termination protein NusA [Vibrio metschnikovii CIP 69.14] gi|260613107|gb|EEX38308.1| transcription termination protein NusA [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/478 (40%), Positives = 309/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + ++RV I+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKHEMEIEVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS A D ++ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFDAANYDDETVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +VIVDLGN ++ VI R++ + REN R GDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDSVIVDLGNNAEAVILREDQLPRENFRSGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV S+D Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEEMIELKGAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESTASIEKFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A +LV EGF+ +EE+A V +SE+ I+G +EE EI+ RA+E L I +T ++ Sbjct: 364 DIEQDFAEMLVEEGFSTLEEIAYVPVSELLEIDGLNEEIIEEIRARAKEALTTIALTQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 L +++L + G++ + L G+ T+EDLA +DDL G +E + G + Sbjct: 424 SFEGLEPADDLLGLAGLERDMAFKLAAKGVATLEDLADQGIDDLEGIEGLTEERAGEL 481 >gi|145589410|ref|YP_001156007.1| transcription elongation factor NusA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047816|gb|ABP34443.1| NusA antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 493 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 317/468 (67%), Gaps = 6/468 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +ADA+A EK++D+ +V + ++ A + Y T DIRV I+ E+G+ FR Sbjct: 4 EVLMLADALAREKNVDQAIVFEALEMALASATKKRYATEDVDIRVSIDRESGEYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ +I A+++ I++G + + + + FGR+ Q+AKQVI+Q++R Sbjct: 64 LVVPDEAGLQEPDKEILQFEAKEQLSDIEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ ++ ++ ++++GTVKR + +I++ G + ++RRD+ I +ENLR GDRV+ Sbjct: 124 DAEREQILNDYLERGEKVMTGTVKRADKNGLIIESGRVEALLRRDQMIPKENLRSGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV + Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VD+ +A +L+ EGF +EE+A V +SE+ I+ FDE+T E++ RAR+ L +++ Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDEDTVNELRTRARDSLLTMELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ Sbjct: 424 KEERIGE--VSQDLRSLDGMTTELIAKLADNQVHTRDDLAELAVDELV 469 >gi|149909281|ref|ZP_01897937.1| N utilization substance protein A [Moritella sp. PE36] gi|149807598|gb|EDM67546.1| N utilization substance protein A [Moritella sp. PE36] Length = 499 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 302/468 (64%), Gaps = 5/468 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK++ R+ + M ++ A + Y ++RVEI+ +TG+ FR Sbjct: 4 EILLVVDAVSNEKALPREKIFEAMEIALATATKKRYEGDIEVRVEIDRKTGNFETFRRWL 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+ E +EN +I+L A+ D +I++GG + D + + F RV Q+AKQVIIQKVR Sbjct: 64 VIDDKGEPLENPFSEITLDAAKYDDETIEVGGYIEDTIDSVVFDRVTTQTAKQVIIQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAERD + GE+I+G VKR V++DLGN ++ V+ RDE + RE+ R GDR+ Sbjct: 124 EAERDLIVQHYAKHEGELITGLVKRANRETVVLDLGNNAEAVMFRDEMLPRESFRTGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + +V+ E RG Q+ +SR + +++LF +EVPE ++++KA +RDPGSRAK+AV Sbjct: 184 KGLLKEVKPEARGTQLFISRACNEMLIELFRIEVPEFNEEMLELKAAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV EL E++DI++W + A FVINA+ PA V +++D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSNELNGERVDIILWDDNPAQFVINAMAPAEVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +E L+ AIGR GQNVRLASQLTGW ++++T E + QK+ + F Sbjct: 304 EDQHSMDIAVEQENLAQAIGRNGQNVRLASQLTGWELNVMTVAEANEKHQKENDRLMNIF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 +++DE +A LL+ EGF+ +EE+A V ++E I+GFDE+ E++GRA+ L + Sbjct: 364 TDKLDIDEDMAELLIEEGFSSLEEIAYVPVNEFLQIDGFDEDLVDELRGRAKNALTTSAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + S +L ++ G++ + L G+ T+E+LA S+DDL Sbjct: 424 AAEESLESAEPSADLLALEGLEKHLAYVLASIGVITLEELAEQSIDDL 471 >gi|221067737|ref|ZP_03543842.1| NusA antitermination factor [Comamonas testosteroni KF-1] gi|220712760|gb|EED68128.1| NusA antitermination factor [Comamonas testosteroni KF-1] Length = 495 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/469 (42%), Positives = 310/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK Sbjct: 61 RWVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDR Sbjct: 121 IRDAEREMLLNEFLARGDKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L + Sbjct: 361 FMEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQE 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L Sbjct: 421 IAREENVSK--ASEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDEL 467 >gi|153207276|ref|ZP_01946040.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat Q177'] gi|154706434|ref|YP_001423972.1| transcription elongation factor NusA [Coxiella burnetii Dugway 5J108-111] gi|165918786|ref|ZP_02218872.1| transcription termination factor NusA [Coxiella burnetii RSA 334] gi|212212197|ref|YP_002303133.1| transcription elongation factor NusA [Coxiella burnetii CbuG_Q212] gi|212218228|ref|YP_002305015.1| transcription elongation factor NusA [Coxiella burnetii CbuK_Q154] gi|120576764|gb|EAX33388.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat Q177'] gi|154355720|gb|ABS77182.1| N utilization substance protein A [Coxiella burnetii Dugway 5J108-111] gi|165917510|gb|EDR36114.1| transcription termination factor NusA [Coxiella burnetii RSA 334] gi|212010607|gb|ACJ17988.1| N utilization substance protein A [Coxiella burnetii CbuG_Q212] gi|212012490|gb|ACJ19870.1| N utilization substance protein A [Coxiella burnetii CbuK_Q154] Length = 503 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/470 (43%), Positives = 317/470 (67%), Gaps = 8/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 4 DILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFRCW 63 Query: 67 EVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+A Q AKQVI+QKV Sbjct: 64 TVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAAQQAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +++ +VGE++ G VKRV ++I+D+G N++ ++ R+E I RE R DR Sbjct: 124 REAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRINDR 183 Query: 182 VKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++Y+Y V + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK+A Sbjct: 184 LRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V +V Sbjct: 244 VKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ + Sbjct: 304 VDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKIKT 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 364 AFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLLTQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +I Q ++ E +E+L ++PG+ +++ L EN + T +DLA SV DL Sbjct: 424 EIAKQ-ELDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDL 472 >gi|326316665|ref|YP_004234337.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373501|gb|ADX45770.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 494 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/466 (42%), Positives = 312/466 (66%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 4 ELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+R+ Sbjct: 64 VVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESVPIGRIGAMAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV++ Sbjct: 124 AEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV S Sbjct: 184 MIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVLSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 364 KLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L Sbjct: 424 EESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDEL 467 >gi|264677930|ref|YP_003277837.1| NusA antitermination factor [Comamonas testosteroni CNB-2] gi|299530199|ref|ZP_07043625.1| NusA antitermination factor [Comamonas testosteroni S44] gi|262208443|gb|ACY32541.1| NusA antitermination factor [Comamonas testosteroni CNB-2] gi|298721856|gb|EFI62787.1| NusA antitermination factor [Comamonas testosteroni S44] Length = 495 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/469 (42%), Positives = 310/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK Sbjct: 61 RWVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDR Sbjct: 121 IRDAEREMLLNEFLARGEKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L + Sbjct: 361 FMEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQE 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L Sbjct: 421 IAREENVSK--ASEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDEL 467 >gi|160871616|ref|ZP_02061748.1| NusA antitermination factor [Rickettsiella grylli] gi|159120415|gb|EDP45753.1| NusA antitermination factor [Rickettsiella grylli] Length = 512 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 204/482 (42%), Positives = 302/482 (62%), Gaps = 18/482 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ V+ EK +D++++ + ++ A + G D+R+ I+ TGD FR Sbjct: 4 EILLVAETVSNEKDVDKELIFKAIEAALAMATKKKAGEDIDVRIAIDRRTGDYETFRTWT 63 Query: 68 VVEEVENYTC------------QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 VV + + I L A+ R P+ IG ++ + +P ++FGR+A Q+AK Sbjct: 64 VVADEAEFNHSDEIPVSFDPLKHIQLSEAKKRHPNSQIGDIIEERMPSVEFGRIAAQTAK 123 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRE 174 QVIIQKVREAER + + ++VGE++SG VKRV +IVDLG S + + R+E I RE Sbjct: 124 QVIIQKVREAERAKIAEAYTNRVGELLSGIVKRVTREGLIVDLGASVEAFVPREEMIPRE 183 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +R DR++ Y+Y V + RGPQ+L+SRT P+ +++LF +EVPEI ++++K+ +RDPG Sbjct: 184 EIRSEDRLRGYLYAVNPQVRGPQLLMSRTRPEMLIELFKIEVPEIGEELIEIKSAARDPG 243 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SRAK+AV ++D IDP+GACVGMRG+RVQAV +EL E+IDIV+W + VINA+ PA Sbjct: 244 SRAKIAVKTNDGRIDPIGACVGMRGARVQAVSSELAGERIDIVLWDDNPVQLVINAMAPA 303 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V +V+DED ++V V ++QLS AIGR GQNVRLAS+LTGW I++IT EE + K+ Sbjct: 304 EVASIVVDEDTKVMDVAVQEDQLSQAIGRNGQNVRLASELTGWIINVITVEEAAKKIVKE 363 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 F++ + +DE +A +LV EGF +EE+A V E+ +IEGFD +Q RA+ Sbjct: 364 SENLQNLFIEQLTIDEALAEMLVREGFTSLEEIAYVSAQELLAIEGFDSILVEMLQTRAK 423 Query: 415 EYLEGIDITLQKKI-----RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 E L T QK + L +L S+ G+ +I L + G+ + E LA +VDD Sbjct: 424 EVLALQAPTKQKSSTTEHEKFLEPHRDLLSLEGMTEEIATTLAKRGVSSREALAELAVDD 483 Query: 470 LL 471 LL Sbjct: 484 LL 485 >gi|121604913|ref|YP_982242.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2] gi|120593882|gb|ABM37321.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 506 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/469 (42%), Positives = 308/469 (65%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR Sbjct: 2 NR-ELLMLVDAISREKNVERDVVFGAVELALASATKKVYADGVDIRVAVDRDSGNYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + + ARD P I+ G + P+ + GR+ Q+AKQVI+QK Sbjct: 61 RWLVVADEAGLQNPEAEELVTDARDEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRMDKGDLIVESGRVEGRLRRSDMIPKENLRTGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSRT P++M++LF EVPEI G++++K +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDTTLRGAPIILSRTSPEYMIELFRQEVPEIEQGLLEIKTCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + Sbjct: 301 DEERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDANESAQKQATETDSSRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VD+ IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMAKLDVDQEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + GVS+ L + G+ ++ L E G+ T +DLA +VD+L Sbjct: 421 IAQEENVG--GVSQNLRDVEGLTPELIAKLTEAGVATRDDLADLAVDEL 467 >gi|219870469|ref|YP_002474844.1| transcription elongation factor NusA [Haemophilus parasuis SH0165] gi|219690673|gb|ACL31896.1| transcription elongation factor NusA [Haemophilus parasuis SH0165] Length = 510 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/482 (40%), Positives = 312/482 (64%), Gaps = 19/482 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVL----SVMADSIQKAA-------RSLYGTMSDIRVEINPE 56 E+L A+AV+ EK + +D + + +A S +K A ++ G D+RV I+ + Sbjct: 4 EILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVIDRK 63 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A+Q Sbjct: 64 TGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTARQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDE 169 VI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R++ Sbjct: 124 VITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVRED 183 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K Sbjct: 184 MLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIKGA 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+IN Sbjct: 244 SRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFLIN 303 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDELEK 363 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-E 408 Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G ++E V E Sbjct: 364 KHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLVEE 423 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 +Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA VD Sbjct: 424 LQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQGVD 483 Query: 469 DL 470 DL Sbjct: 484 DL 485 >gi|301156201|emb|CBW15672.1| transcription termination/antitermination L factor [Haemophilus parainfluenzae T3T1] Length = 495 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/465 (41%), Positives = 311/465 (66%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +++L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEMTLEAAQFEDPNVQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+ + G+I++GTVK+V ++I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+D Sbjct: 184 YKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM + Sbjct: 304 SMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMDKL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V +SE+ +I+G ++E + E+QGRA++ + + Sbjct: 364 GLDEDFAQILVDEGFTSLEEVAYVPVSELTAIDGLEDEDLIEELQGRAKDAITAAAAAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ I L E I T+E+LA VDDL Sbjct: 424 EALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDL 468 >gi|227112574|ref|ZP_03826230.1| transcription elongation factor NusA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 509 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/477 (41%), Positives = 304/477 (63%), Gaps = 14/477 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQK 353 +DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Q Sbjct: 304 VDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKHQA 363 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++ RA Sbjct: 364 EAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRERA 423 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + L + + ++ + +E+L +PG+ ++ L G+ T+EDLA VDDL Sbjct: 424 KAALTTLALAHEESRGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 >gi|90412484|ref|ZP_01220487.1| transcription elongation factor NusA [Photobacterium profundum 3TCK] gi|90326521|gb|EAS42927.1| transcription elongation factor NusA [Photobacterium profundum 3TCK] Length = 495 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 191/469 (40%), Positives = 305/469 (65%), Gaps = 1/469 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQFETFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F D GE+I+G VK+V V++DLGN ++ VI+RD+ + REN R GDR++ + Sbjct: 124 EQIVEQFMDNEGELITGIVKKVNRDAVVIDLGNNAEAVIQRDDQLPRENFRSGDRIRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ Q++ F + + Sbjct: 304 TMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHQEEAQVSIDTFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ RA+ L + + ++ Sbjct: 364 DIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRDRAKAALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + + +L + G++ ++ L GI T+EDLA DDLL E Sbjct: 424 SFEGVEPAADLLGLDGLERELAFKLAAKGICTLEDLADQGTDDLLDLEE 472 >gi|227357076|ref|ZP_03841446.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis ATCC 29906] gi|227162768|gb|EEI47731.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis ATCC 29906] Length = 502 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 316/485 (65%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++++GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EEL V I E+ +I+G DEET ++ RA+ L Sbjct: 364 EIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDGLDEETVEALRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL G + Sbjct: 424 IELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDIDGLNSE 483 Query: 477 KGGNI 481 + G + Sbjct: 484 RAGEL 488 >gi|299067340|emb|CBJ38537.1| transcription termination/antitermination L factor [Ralstonia solanacearum CMR15] Length = 491 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/502 (39%), Positives = 329/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++PS+++ + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSVNLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTNWQINIMTPAESAQKQAEESSTVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVEK--VSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|33152524|ref|NP_873877.1| transcription elongation factor NusA [Haemophilus ducreyi 35000HP] gi|33148747|gb|AAP96266.1| transcription termination-antitermination factor nusA, N utilization substance protein A [Haemophilus ducreyi 35000HP] Length = 493 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 306/465 (65%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + G DIRV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKGIDIDIRVVINRKTGEFQTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+V N T +ISL A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 IVEQVHNMTREISLAAAQYEDPNVQLGDFVEDEIESIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ I++ TVK+V +I+DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 NKVIEQFRTQLNCIVTATVKKVNREQIILDLGNQAEAVIIREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + LF +EVPEI ++++K SRD GSR+K+AV S+D Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEVLFKLEVPEIGEEVIEIKGASRDAGSRSKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMSPAEVSHIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGW+++++T E+ + Q + N+ F+ ++ Sbjct: 304 AMDIAVETKNLAQAIGRNGQNVRLATQLTGWSLNVMTTEDLNEKHQAEDNKIIDLFVTSL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET-AVEIQGRAREYLEGIDITLQ 425 +DE AHLLV EGF+ +EE+A + ++E+ I+G D+E A E+Q RA+ + + + Sbjct: 364 QIDEEFAHLLVDEGFSSLEEIAFIAVNELVDIDGIDDENLAEELQTRAKAAITEKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ + + L ++ G++ I L E GI T+E+LA +DDL Sbjct: 424 EALKRADIEDRLLNLDGLERHIAFKLAEKGIVTLEELAEQGIDDL 468 >gi|187928209|ref|YP_001898696.1| transcription elongation factor NusA [Ralstonia pickettii 12J] gi|187725099|gb|ACD26264.1| NusA antitermination factor [Ralstonia pickettii 12J] Length = 491 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/502 (40%), Positives = 326/502 (64%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L A+++D I++ V + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQDADIEVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L + + L Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVL--LTMEL 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K+ R VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 422 AKEERVEKVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|117619535|ref|YP_857795.1| transcription elongation factor NusA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560942|gb|ABK37890.1| transcription elongation protein NusA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 500 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/481 (41%), Positives = 306/481 (63%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 4 EILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRRWV 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VIADQAAMENPYAEITLEAAQIEQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR++ Sbjct: 124 AERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDRIR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV + Sbjct: 184 GLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++DE Sbjct: 244 NDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + F Sbjct: 304 DNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRILTLFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L + Sbjct: 364 STLDIDDDFASLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + SEEL ++ G+ ++ AL GI T+EDLA +DDL G + K G Sbjct: 424 KEESFEGVEPSEELLNLNGLGREMAYALAARGIGTLEDLAEQGIDDLADIEGLTAEKAGE 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|120612038|ref|YP_971716.1| NusA antitermination factor [Acidovorax citrulli AAC00-1] gi|120590502|gb|ABM33942.1| NusA antitermination factor [Acidovorax citrulli AAC00-1] Length = 494 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/466 (41%), Positives = 312/466 (66%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 4 ELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+R+ Sbjct: 64 VVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESLPIGRIGAMAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV++ Sbjct: 124 AEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV S Sbjct: 184 MIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVLSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE IA++L+ EGF+ +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 364 KLDVDEEIANILIEEGFSSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L Sbjct: 424 EESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDEL 467 >gi|54307814|ref|YP_128834.1| transcription elongation factor NusA [Photobacterium profundum SS9] gi|46912237|emb|CAG19032.1| putative transcription pausing L factor [Photobacterium profundum SS9] Length = 495 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/473 (41%), Positives = 308/473 (65%), Gaps = 9/473 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG ++ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQVATFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F D GE+I+G VK+V VI+DLGN ++ VI+RD+ + REN R GDR++ + Sbjct: 124 EQIVEQFMDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRSGDRIRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDEDSH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF----F 362 +++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E + QK E Q F Sbjct: 304 TMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVE----DLQKKHKEEAQVSIDTF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ A+E L + + Sbjct: 360 TKYLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRKCAKEALTTLAL 419 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 ++ + + +L + G++ ++ L GI T+EDLA DDLL E Sbjct: 420 AQEESFEGVEPAADLLGLDGLERELAFRLAAKGICTLEDLADQGTDDLLDLEE 472 >gi|226329684|ref|ZP_03805202.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198] gi|225202870|gb|EEG85224.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198] Length = 502 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 317/485 (65%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ DPSI++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTREITLEAAQYEDPSIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++++GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQLGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRLRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRTETRGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EEL V ISE+ +I+G DE+T ++ RA+ L Sbjct: 364 EIFTKHLDIDEDFATVLVEEGFSTLEELVYVPISELLAIDGLDEDTVEALRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL G + Sbjct: 424 IELAQKESLGDNQPAEDLLALEGLERSLAFDLAARGICTLEDLAEQGIDDLTDIEGLNSE 483 Query: 477 KGGNI 481 + G + Sbjct: 484 RAGEL 488 >gi|319793511|ref|YP_004155151.1| nusa antitermination factor [Variovorax paradoxus EPS] gi|315595974|gb|ADU37040.1| NusA antitermination factor [Variovorax paradoxus EPS] Length = 497 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 311/470 (66%), Gaps = 5/470 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR Sbjct: 2 NR-EMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVAVDRDSGDYETFR 60 Query: 65 LLEVVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + +I L A++ I++G + + + + GR+ +AKQVI+QK Sbjct: 61 RWHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA +L+AEGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIADILIAEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTME 420 Query: 422 ITLQKKIR-ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + + VS+ L + G+D ++ L E G+ T +DLA +VD+L Sbjct: 421 IAKEEGVETQSSVSQNLRDLEGLDPELIPKLAEAGVNTRDDLADLAVDEL 470 >gi|254482493|ref|ZP_05095732.1| NusA N-terminal domain family [marine gamma proteobacterium HTCC2148] gi|214037184|gb|EEB77852.1| NusA N-terminal domain family [marine gamma proteobacterium HTCC2148] Length = 497 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 316/480 (65%), Gaps = 6/480 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + ++ + ++ A + Y SDI V I+ TGD R Sbjct: 4 EILLVAEAVSNEKGVAESIIFEAIELALATATKKRYDEESDIEVTIDRSTGDYVTKRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +E+ Q + + A ++D S+ G + + + + FGR+A Q+AKQVI+Q+VR+A Sbjct: 64 VVPDDELALLGTQFTTEEAAEQDTSLQPGDIYEEVIDNVGFGRIAAQTAKQVIVQRVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ ++ +VGE+++GTVK+V NVIVDLGN ++G++ R E + RE R DRV++ Sbjct: 124 EREQVVEQYMGRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPRSELVGRETFRVNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q++A +RDPGSRAK+AV ++ Sbjct: 184 ILKEISTEARGPQLILSRACPEMLIELFKIEVPEISEEVIQIRAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DED Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMAPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 G ++V V +E L+ AIGR GQNVRLA++LT WTI++++ EE + + + E F + Sbjct: 304 SGTMDVAVSEENLAQAIGRSGQNVRLAAELTEWTINVMSLEEAADKHEAEAGEVIGVFCK 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ A E++ RA++ L I Sbjct: 364 ALDVDEDVAEILVEEGFTTLEEVAYVPLEEMTAIDGFDEDIAEELRARAKDALLTQAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 ++++ +E+L ++ G+D + L I TMEDLA +V+DL+ +E + G + Sbjct: 424 EEQLGANEPAEDLLTMEGMDRHLAYILSSREIVTMEDLAEQAVEDLMDIEDMTEERAGEL 483 >gi|170727895|ref|YP_001761921.1| transcription elongation factor NusA [Shewanella woodyi ATCC 51908] gi|169813242|gb|ACA87826.1| NusA antitermination factor [Shewanella woodyi ATCC 51908] Length = 499 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/482 (41%), Positives = 309/482 (64%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV+I+ +TG FR Sbjct: 4 EILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVQIDRKTGGYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ DP I +G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTGEPLENPFSEITLEAAQFEDPEIQLGDYIEDDIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F+DK GE+I+G VK+ +V+VDLGN +D V+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVDQFRDKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 244 SNDKRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMSPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKIVNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A+ VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ + + Sbjct: 364 VSALEVDEDFAQVLADEGFTSLEEVAYVPESELMEIDGFDEEIVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENKGG 479 ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ +E K G Sbjct: 424 ASEEALDGAEPSEDLLALEGLERHLAFVLASKGVITLEDLAEQGIDDLIDIEELTEEKAG 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|330504828|ref|YP_004381697.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01] gi|328919114|gb|AEB59945.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01] Length = 493 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 305/462 (66%), Gaps = 3/462 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+ Sbjct: 304 AHAMDIAVGEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEDIVNELRARAKDRLLTKAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++K+ + +++L + G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS 465 >gi|91788290|ref|YP_549242.1| NusA antitermination factor [Polaromonas sp. JS666] gi|91697515|gb|ABE44344.1| NusA antitermination factor [Polaromonas sp. JS666] Length = 506 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/469 (41%), Positives = 311/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR Sbjct: 2 NR-ELLMLVDAISREKNVERDVVFGAVELALASATKKVYEDGVDIRVVVDRDSGNYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + + AR+ P I+ G + P+ + GR+ Q+AKQVI+QK Sbjct: 61 RWLVVPDEAGLQNPEAEELVSDAREEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRMDKGDIIVESGRVEGRLRRSDMIPKENLRAGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSRT P++M++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 181 VRAMIMEVDTTLRGAPIILSRTAPEYMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T +E + + + + + Sbjct: 301 DEERHAMDVVVDEENLAISIGRGGQNVRLAAELTGWKINIMTADESAQKQATETDTSRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA +L++EGF +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIADILISEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ GVS+ L + GI ++ L E G+ T +DLA +VD+L Sbjct: 421 IAKEENAE--GVSQNLRDVEGITPELIAKLTEAGVHTRDDLADLAVDEL 467 >gi|330447378|ref|ZP_08311027.1| transcription termination/antitermination L factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491569|dbj|GAA05524.1| transcription termination/antitermination L factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 495 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/478 (41%), Positives = 307/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR + Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVTIDRKTGEFETFRRWK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEV T +I+L+ A+ +P + G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVTQPTLEITLEAAQFENPELVEGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+I+G VK+V VI+DLGN ++ VI+RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + + Sbjct: 304 TMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF +EE+A V +SE+ +EG DE+ +++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFTTLEEIAYVPVSELMEVEGLDEDLIEQLRSRAKAALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L + G++ ++ L GI T+EDLA DDL G + K G + Sbjct: 424 SLDGAEPAEDLLGLEGLERELAFKLAAKGICTLEDLADQGTDDLTDIEGVDDAKAGEL 481 >gi|163752374|ref|ZP_02159569.1| transcription elongation factor NusA [Shewanella benthica KT99] gi|161327746|gb|EDP98933.1| transcription elongation factor NusA [Shewanella benthica KT99] Length = 499 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/482 (40%), Positives = 310/482 (64%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR + Sbjct: 4 EILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRRWQ 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ DP + +G V D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTGEPLENPYGEITLEAAQYEDPELQVGDYVEDDMESVTFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + FKD+ GE+I+G VK+ +V+VDLG N+D V+ +++ ISREN RPGDR+ Sbjct: 124 EAERAQVVELFKDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ ++ VR E RG Q+ ++RT + +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLFSVRPEARGAQLFMTRTKSEMLIELFRIEVPEIADEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V+D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPAEVASIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + F Sbjct: 304 EDSHSMDIAVEADSLAQAIGRNGQNVRLAAQLSGWELNVMTVEDLQKKHQAESAKVVSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++ VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ + + Sbjct: 364 VASLEVDEDFAQVLADEGFTSLEEVAYVPAAELMEIDGFDEDTVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENKGG 479 ++ + SE+L ++ G+D + G+ T+E+LA +DDL+ +E K G Sbjct: 424 ATEEALDGAAPSEDLLALEGLDKHLAFVFASKGVITLENLAEQGIDDLIDIEELTEEKAG 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|17546007|ref|NP_519409.1| transcription elongation factor NusA [Ralstonia solanacearum GMI1000] gi|17428302|emb|CAD14990.1| probable n utilization substance transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 491 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/502 (39%), Positives = 329/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++PSI++ + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSINLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTSWQINIMTPAESAQKQAEESSTVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVEK--VSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|121609702|ref|YP_997509.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121554342|gb|ABM58491.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2] Length = 494 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 315/478 (65%), Gaps = 8/478 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LELL + DA++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G FR Sbjct: 3 LELLMLIDAISREKNVERDVVLDAVESALAQATKKLYQGEVDIRVAVDRKSGGHETFRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+R Sbjct: 63 LVVPDEAGLQNPDAEELLMDAKERIADIEVGEYIEETVDSVPIGRIGAMAAKQVILQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV+ Sbjct: 123 DAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSELIPKENLRSGDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I +V RG ++LSR+ P+FM++LF EVPEI ++++K+ +RDPGSRAK+AV S Sbjct: 183 AMIMEVDLSLRGAPIILSRSAPEFMIELFRQEVPEIEQSLLEIKSCARDPGSRAKIAVLS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 243 HDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLA+ LTGW I+I+ E + + K+ + + FM Sbjct: 303 EKHAMDVVVDEENLAIAIGRGGQNVRLAADLTGWKINIMDAAESAQKQAKESDTARRLFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE IA +L+AEGF +EE+A V + E+ I+ FDE+T E++ RA++ L ++I Sbjct: 363 EKLDVDEEIADILIAEGFNSLEEVAYVPLQEMLEIDSFDEDTVNELRARAKDALLTMEIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKG 478 ++ + E VS++L + G+ + L + G+ T +DLA ++D DL G SE + Sbjct: 423 REESVEE--VSQDLRDLGGLSPALIAQLAKGGVHTRDDLADLAIDELTDLTGQSEEEA 478 >gi|33592374|ref|NP_880018.1| transcription elongation factor NusA [Bordetella pertussis Tohama I] gi|33602223|ref|NP_889783.1| transcription elongation factor NusA [Bordetella bronchiseptica RB50] gi|33572019|emb|CAE41542.1| N utilization substance protein A [Bordetella pertussis Tohama I] gi|33576661|emb|CAE33739.1| N utilization substance protein A [Bordetella bronchiseptica RB50] gi|332381790|gb|AEE66637.1| transcription elongation factor NusA [Bordetella pertussis CS] Length = 492 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/469 (44%), Positives = 304/469 (64%), Gaps = 12/469 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S+NRQ+ ER Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLNRQE--TERAALRAT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I +++ L +++L + GI ++ L E + T +DLA S D+L Sbjct: 421 IAQEER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDEL 466 >gi|320540176|ref|ZP_08039831.1| putative transcription termination/antitermination L factor [Serratia symbiotica str. Tucson] gi|320029842|gb|EFW11866.1| putative transcription termination/antitermination L factor [Serratia symbiotica str. Tucson] Length = 502 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/485 (40%), Positives = 307/485 (63%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ A+ +P ++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTREITLEAAQYEEPDTELGGYIEDQIDSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 F++ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFREHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNERT 359 +++ V L+ AIGR GQNVRLASQL W ++++T ++ + Q + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQVKHQAEAHAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+T ++ RAR Sbjct: 364 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRARAASTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 + + ++ + +E+L ++PG++ + L G+ T+EDLA VDDL G S Sbjct: 424 LALAQKESLGGQEPAEDLLNLPGLERSMAFKLAARGVGTLEDLAEQGVDDLADIEGLSNQ 483 Query: 477 KGGNI 481 + G + Sbjct: 484 QAGEL 488 >gi|294142061|ref|YP_003558039.1| N utilization substance protein A [Shewanella violacea DSS12] gi|293328530|dbj|BAJ03261.1| N utilization substance protein A [Shewanella violacea DSS12] Length = 499 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/482 (39%), Positives = 311/482 (64%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR + Sbjct: 4 EILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRRWQ 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ + + +G V D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTGEPLENPYGEITLEAAQYENAELQVGDFVEDDMESVTFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +F+D+ GE+I+G VK+ +V+VDLG N+D V+ +++ ISREN RPGDR+ Sbjct: 124 EAERAQVVEQFQDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ ++ VR E RG Q+ ++RT P +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLFSVRPEARGAQLFMTRTQPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V+D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPADVASIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + F Sbjct: 304 EDTHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWVLNVMTVEDLQAKHQAESAKVVSLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ + + Sbjct: 364 VSSLDVDEDFAQILADEGFTSLEEVAYVPSAELMEIDGFDEDTVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENKGG 479 ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ +E K G Sbjct: 424 ATEEALDGAEPSEDLLALEGLEKHLAFVFASKGVITLEDLAEQGIDDLIDIEELTEEKAG 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|301170017|emb|CBW29621.1| transcription termination/antitermination L factor [Haemophilus influenzae 10810] Length = 495 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/465 (40%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + + F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDKKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ + + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 424 EALKKANIEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 468 >gi|330830889|ref|YP_004393841.1| transcription elongation factor NusA [Aeromonas veronii B565] gi|328806025|gb|AEB51224.1| transcription elongation factor NusA [Aeromonas veronii B565] Length = 500 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/481 (41%), Positives = 306/481 (63%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 4 EILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRRWV 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VIADQAAMENPYAEITLEAAQIDQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDRV+ Sbjct: 124 AERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV + Sbjct: 184 GLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++DE Sbjct: 244 NDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + F Sbjct: 304 DNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRIMNLFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L + Sbjct: 364 STLDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + SEEL ++ G+ ++ AL G+ T+EDLA +DDL G + K G Sbjct: 424 KEESFDGVEPSEELLNLNGLSRELAYALAGRGVGTLEDLAEQGIDDLADIEGLTAEKAGE 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|157962879|ref|YP_001502913.1| transcription elongation factor NusA [Shewanella pealeana ATCC 700345] gi|157847879|gb|ABV88378.1| NusA antitermination factor [Shewanella pealeana ATCC 700345] Length = 499 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/467 (41%), Positives = 304/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIESVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGTNADGVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVADMKAKHQAESAKVVNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 +QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++ RA+ + + Sbjct: 364 IQALDVDEEFAQLLSDEGFTSLEEIAYVPASELLEIDGFDEDIVESLRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + SE+L ++ G+D + + G+ T+EDLA +DD Sbjct: 424 ATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDD 470 >gi|218782565|ref|YP_002433883.1| transcription elongation factor NusA [Desulfatibacillum alkenivorans AK-01] gi|218763949|gb|ACL06415.1| NusA antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 488 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/392 (48%), Positives = 269/392 (68%), Gaps = 4/392 (1%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ D V+ +K ID++V+++ + +++Q AAR G +DI V+ N E G++ +F+ EVVE Sbjct: 8 RVIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFREVVE 67 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV ++S++ R+ DP ++G + + FGR+A QSAKQVIIQK+++AERD Sbjct: 68 EVTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAERDAV 127 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 Y F D+ GEII+G ++R++ G++IV+LG ++GV+ E + RE GDR++++I DV Sbjct: 128 YSSFMDRKGEIINGIMQRMDRGDIIVNLGQTEGVLPSREQVPRETYHRGDRIRAFILDVV 187 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 E RGPQ++LSRTHP F+ LF MEVPEI G+V V A +R+PG RAK+AV SSDS ID Sbjct: 188 LEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSDSDIDA 247 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VGACVGM+GSRVQ VV ELR EKIDIV W DSA FV NAL PA +++V++DE+ +EV Sbjct: 248 VGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEENHAMEV 307 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 IVP E LS+AIG++GQNVRLAS+LTGW +D+ +E S Q +N M+ +DE Sbjct: 308 IVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKSETRYSRTMQDGYNS----LMELAELDE 363 Query: 371 IIAHLLVAEGFADVEELACVKISEIASIEGFD 402 IA L +GF VEEL+ ++ I+G D Sbjct: 364 NIADALYEKGFYSVEELSAADPDDLVQIKGID 395 >gi|33596482|ref|NP_884125.1| transcription elongation factor NusA [Bordetella parapertussis 12822] gi|33566251|emb|CAE37162.1| N utilization substance protein A [Bordetella parapertussis] Length = 492 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/469 (43%), Positives = 304/469 (64%), Gaps = 12/469 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG Q++LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQLILSRTSPEFIRQLFENEVPEIEQGLLEIKATARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S+NRQ+ ER Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLNRQE--TERAALRAT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I +++ L +++L + GI ++ L E + T +DLA S D+L Sbjct: 421 IAQEER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDEL 466 >gi|90581550|ref|ZP_01237343.1| transcription elongation factor NusA [Vibrio angustum S14] gi|90437312|gb|EAS62510.1| transcription elongation factor NusA [Vibrio angustum S14] Length = 495 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/478 (41%), Positives = 306/478 (64%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR + Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGEFETFRRWK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEV T +I+L+ A+ D +I G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVTQPTLEITLEAAQFEDSTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+I+G VK+V VI+DLGN ++ VI+RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + + Sbjct: 304 TMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A +LV EGF +EE+A V +SE+ ++G DEE +++ RA+ L + + ++ Sbjct: 364 DIDEEFATVLVEEGFTTLEEIAYVPVSELMDVDGLDEEIIDQLRSRAKAALTTLALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +E+L + G++ ++ GI T+EDLA DDL G + K G + Sbjct: 424 TLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIEGVDDAKAGEL 481 >gi|187478885|ref|YP_786909.1| transcription elongation factor NusA [Bordetella avium 197N] gi|115423471|emb|CAJ50005.1| transcription elongation protein (N utilization substance protein) [Bordetella avium 197N] Length = 492 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 209/483 (43%), Positives = 309/483 (63%), Gaps = 15/483 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P +++G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSDAHEISPDLEVGDFIEEPLEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISGT+KR++ G+ IV+ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDYIVETGKIEARLPRTEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S+NRQ+ NER Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLNRQE--NERVSLRAT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMDKLDVDEEVADILIDEGFTGLEEIAYVPMQELLEIEAFDEDTINELRVRARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKG 478 I +++ L +++L + G+ + L E + T +DLA + D+L G SE + Sbjct: 421 IAQEER---LETAQDLLELEGVTPDLAAKLAERNVHTRDDLAELATDELAEIAGMSEQEA 477 Query: 479 GNI 481 ++ Sbjct: 478 SDL 480 >gi|329123362|ref|ZP_08251927.1| N utilization substance A [Haemophilus aegyptius ATCC 11116] gi|327471362|gb|EGF16814.1| N utilization substance A [Haemophilus aegyptius ATCC 11116] Length = 507 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 16 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 76 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN R GDRV+ + Sbjct: 136 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 195 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 196 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 255 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 256 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 315 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 316 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 375 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 376 KLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 435 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 436 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 480 >gi|319776227|ref|YP_004138715.1| Transcription elongation protein NusA [Haemophilus influenzae F3047] gi|317450818|emb|CBY87040.1| Transcription elongation protein NusA [Haemophilus influenzae F3047] Length = 495 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN R GDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 KLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 468 >gi|197287229|ref|YP_002153101.1| transcription elongation factor NusA [Proteus mirabilis HI4320] gi|194684716|emb|CAR46696.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis HI4320] Length = 502 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/485 (42%), Positives = 315/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++++GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EEL V I E+ +I+ DEET ++ RA+ L Sbjct: 364 EIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDSLDEETVEALRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL G + Sbjct: 424 IELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDIDGLNSE 483 Query: 477 KGGNI 481 + G + Sbjct: 484 RAGEL 488 >gi|326794269|ref|YP_004312089.1| NusA antitermination factor [Marinomonas mediterranea MMB-1] gi|326545033|gb|ADZ90253.1| NusA antitermination factor [Marinomonas mediterranea MMB-1] Length = 496 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/481 (39%), Positives = 317/481 (65%), Gaps = 8/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + + V+ + ++ AA+ + IRV I+ TGD + FR Sbjct: 4 EILLVAEAVSNEKDVPKQVIFEAVETALASAAKRRFEEDVKIRVSIDQRTGDYNTFRQWN 63 Query: 68 VVEEVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V + E+Y+ ++++ + ++ + IG + + +P +FGR+A Q+AKQVI+QKVRE Sbjct: 64 IVAD-EDYSYPDSELTIDDSVEQSLGLAIGEIYEEEIPSEEFGRIAAQTAKQVIVQKVRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + + +KVG+++ G VK+V ++IVDLG N++ + +D+ I+RE R DR++ Sbjct: 123 AERAKVVARYSEKVGKLVHGQVKKVTRDSLIVDLGENAEAALPKDQLINREMFRMNDRIR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++R + RGPQ++LSR P+FM++LF +EVPEI +++++ SRDPG RAK+AV + Sbjct: 183 ALLSEIREDGRGPQLVLSRNVPEFMIELFKLEVPEIAEEVIEIRGASRDPGLRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+DE Sbjct: 243 NDRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVIDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLA+ LTGW ++++T EE +Q++ + F+ Sbjct: 303 DAHSMDVAVKSDNLAQAIGRNGQNVRLATSLTGWALNVMTSEEAQSKQQEESQKLIDVFV 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++++D+ +A LV EGF +EE+A V + E+ I+GFDE+ E++ RA+E L + Sbjct: 363 NSLDIDDDLALQLVDEGFETLEEVAYVPMEEMLDIDGFDEDLVNELRSRAKESLLNQALQ 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++K+ + +E+L ++ G+DS + + GI TMEDLA SVD+LL G +E + + Sbjct: 423 AEEKLDDAKPAEDLLTMEGMDSHLALVFASKGIITMEDLAEQSVDELLEIEGITEERAAS 482 Query: 481 I 481 + Sbjct: 483 L 483 >gi|322831213|ref|YP_004211240.1| NusA antitermination factor [Rahnella sp. Y9602] gi|321166414|gb|ADW72113.1| NusA antitermination factor [Rahnella sp. Y9602] Length = 502 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/485 (40%), Positives = 311/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEIALSTATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EV T +I+L+ A+ DPSID+GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVNEVTQPTREITLEAAQYEDPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++G VK+V ++ +DLG N++ VI R++ + REN R GDR++ + Sbjct: 124 AMVVDQFREQQGEIVTGVVKKVNRDSIALDLGSNAEAVILREDMLPRENFRSGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRNEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRGDDKWELNVMTADDLQAKHQAEAHAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + + +DE A +LV EGF+ +EELA V ++E+ I+G DE+T ++ RA+E L Sbjct: 364 DTFTKYLAIDEDFATVLVEEGFSTLEELAYVPVNELLEIDGLDEDTVDALRERAKEALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 + + ++ + + +++L ++ G++ + L G+ T+EDLA VDDL G ++ Sbjct: 424 LALAQEESLGDKKPADDLLNLAGLERSMAFKLAAQGVCTLEDLAEQGVDDLADIEGLTDE 483 Query: 477 KGGNI 481 + G + Sbjct: 484 QAGEL 488 >gi|319896984|ref|YP_004135179.1| transcription elongation protein nusa [Haemophilus influenzae F3031] gi|317432488|emb|CBY80845.1| Transcription elongation protein NusA [Haemophilus influenzae F3031] Length = 495 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 312/465 (67%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLGN ++ +I R++ + REN R GDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G ++E V E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + +++ V + L ++ G++ + + L E I T+E+LA VDDL Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDL 468 >gi|207723239|ref|YP_002253638.1| n utilization substance protein [Ralstonia solanacearum MolK2] gi|206588435|emb|CAQ35398.1| n utilization substance protein [Ralstonia solanacearum MolK2] Length = 491 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/502 (39%), Positives = 328/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVEK--VSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|300704337|ref|YP_003745940.1| transcription termination/antitermination l factor [Ralstonia solanacearum CFBP2957] gi|299072001|emb|CBJ43331.1| transcription termination/antitermination L factor [Ralstonia solanacearum CFBP2957] Length = 491 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/502 (39%), Positives = 328/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKEILLFEAREQNPDVSIDDFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVEK--VSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|83748667|ref|ZP_00945684.1| N utilization substance protein A [Ralstonia solanacearum UW551] gi|207743364|ref|YP_002259756.1| n utilization substance protein [Ralstonia solanacearum IPO1609] gi|83724629|gb|EAP71790.1| N utilization substance protein A [Ralstonia solanacearum UW551] gi|206594761|emb|CAQ61688.1| n utilization substance protein [Ralstonia solanacearum IPO1609] Length = 491 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/502 (39%), Positives = 328/502 (65%), Gaps = 22/502 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVEK--VSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHAR 506 G ++Q +++I+ AR Sbjct: 472 -------GVDEEQAKALIMKAR 486 >gi|171463768|ref|YP_001797881.1| NusA antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193306|gb|ACB44267.1| NusA antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 493 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/471 (41%), Positives = 314/471 (66%), Gaps = 12/471 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +ADA+A EK++ + +V + ++ A + Y T DIRV I+ ETG+ FR Sbjct: 4 EVLMLADALAREKNVGQAIVFEALEMALASATKKCYATEDVDIRVSIDRETGEYETFRRW 63 Query: 67 EVV------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VV +E + Q A+++ +++G + + + + FGR+ Q+AKQVI+Q Sbjct: 64 LVVPNEAGLQEPDKEILQFE---AQEQLADMEVGDYIEEQIESLAFGRIGAQAAKQVILQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++R+AER++ + ++ ++++GTVKR + VI++ G + ++RRD+ I +ENLR GD Sbjct: 121 RIRDAEREQILNDHLERGEKVMTGTVKRADKNGVIIESGRVEALLRRDQMIPKENLRSGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+A Sbjct: 181 RVRAYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V Sbjct: 241 VITYDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q Sbjct: 301 VDEERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQ 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM ++VD+ +A +L+ EGF +EE+A V +SE+ I+ FD++T E++ RAR+ L + Sbjct: 361 LFMDKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDKDTVNELRTRARDSLLTM 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ +++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ Sbjct: 421 ELAKEERIGE--VSQDLRSLEGMTTELIAKLADNQVHTRDDLAELAVDELV 469 >gi|300312899|ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gi|300075684|gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 307/466 (65%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D++VV + ++ +A + Y DIRV I+ E+G+ FR Sbjct: 4 EILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFRRWH 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ L A+++ P I++ + DP+ ++FGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F + +++GT+KR+E G+ I++ G + + RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQV+LSRT P+F++KLF +EVPEI G +++K+ +RDPG RAK+AV+++ Sbjct: 184 YILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTA 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGF+ +EE+A V I+E+ IE FDEET E++ RAR+ L + + Sbjct: 364 KLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDAL--VTEAI 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + G+ EEL + G+D + LG G+KT+ AG + D+ Sbjct: 422 ASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEF 467 >gi|58696914|ref|ZP_00372417.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|58698399|ref|ZP_00373311.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225631019|ref|YP_002727810.1| transcription elongation factor NusA [Wolbachia sp. wRi] gi|13569584|gb|AAK31158.1|AF348330_4 N utilization substance protein A [Wolbachia sp. wRi] gi|58535081|gb|EAL59168.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58536861|gb|EAL60065.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|225593000|gb|ACN96019.1| transcription elongation factor NusA [Wolbachia sp. wRi] Length = 520 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/512 (39%), Positives = 330/512 (64%), Gaps = 19/512 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKL 81 Query: 67 EVVE----EVENYTCQ-ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V++ E EN C+ I+L A+ +G VS+ L ++ + + A+Q I Q Sbjct: 82 KVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVSELLS-LNTDLASARIAQQTIAQI 140 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+ Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDK 200 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV Sbjct: 201 VKAYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++ Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ + Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440 Query: 422 ITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++++ LG+ +++ ++ ID+KI AL ++ IKT+ED+A S + + + Sbjct: 441 DRKIEELKSLGMEDDVINLTLSIDNKI--ALSKHDIKTLEDIADLSSYEFCSILSSSSDS 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E KD V+S+II AR K+G I Sbjct: 499 KEDL----------KDIVDSIIIEARKKLGLI 520 >gi|330981089|gb|EGH79192.1| transcription elongation factor NusA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 453 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/448 (42%), Positives = 304/448 (67%), Gaps = 3/448 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALG 452 ++K+ + +E+L S+ G+D + + L Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELA 451 >gi|284006667|emb|CBA71929.1| transcription elongation protein (N utilization substance protein A) [Arsenophonus nasoniae] Length = 504 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/486 (43%), Positives = 312/486 (64%), Gaps = 12/486 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVNIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTQPTREITLDAAKFEDSEIKLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVEQFREQQGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSR K+AV ++D Sbjct: 184 YDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRTKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLASQL W ++++T EE Q + + Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLASQLLKKHRGDDRWELNVMTAEELEAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F++ +++DE A LV EGF+ +EELA V I+E+ IEG DE T ++ RA+ L Sbjct: 364 NSFVKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIEGLDETTIEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL----GWSE 475 +++ ++ + + +E+L ++PG++ + + L +GI T+EDLA +DDL G ++ Sbjct: 424 LELAQKESMGDNQRTEDLLNLPGMNHALAMNLAAHGICTLEDLAEQGIDDLRDIEEGLND 483 Query: 476 NKGGNI 481 + G I Sbjct: 484 EQAGEI 489 >gi|171058383|ref|YP_001790732.1| NusA antitermination factor [Leptothrix cholodnii SP-6] gi|170775828|gb|ACB33967.1| NusA antitermination factor [Leptothrix cholodnii SP-6] Length = 492 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 315/469 (67%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + DA++ EK++DR+VV + ++ A + LY DIRV ++ +TG FR Sbjct: 2 NR-ELLMLVDAISREKNVDREVVFGAVEAALASATKKLYEGEVDIRVAVDRDTGVYETFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++ +I A+++ I++ + + + + GR+ Q+AKQVI+QK Sbjct: 61 RWHVVPDEAGLQLPEAEILHFEAKEQIDDIEVDDYLEESVESVPIGRIGAQAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER++ +F + +I GTVKR++ G+++V+ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREQLLNDFMSRGEKIFVGTVKRLDKGDLVVESGRVEGRLRRSELIPKENLRTGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RGPQ++LSR+ P+FM++LF +EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAIIVEVDPTLRGPQIVLSRSAPEFMIELFRLEVPEIEQGLLEIKSCARDSGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+ Sbjct: 241 VSHDRRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVQSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + + Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATESDSIRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FVDKLDVDEDVADILIAEGFTSLEEVAYVPMQEMLEIESFDEDTVHELRTRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++K+ E VS++L + G+++++ L + GI T +DLA +VD+L Sbjct: 421 IVNEEKVDE--VSQDLRDLEGLNAELIGKLSDGGIHTRDDLADLAVDEL 467 >gi|149189795|ref|ZP_01868076.1| transcription elongation factor NusA [Vibrio shilonii AK1] gi|148836444|gb|EDL53400.1| transcription elongation factor NusA [Vibrio shilonii AK1] Length = 495 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/478 (40%), Positives = 311/478 (65%), Gaps = 4/478 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RV I+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVAIDRKTGEFETFRRWM 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEVE T +IS++ A+ D SI +G V + + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVEFPTKEISIEAAQFDDESIQVGDFVEEEIDSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++++G VK+V +I+DLGN ++ VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEELIELKGAARDPGSRAKIAVKTNDR 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHQEEAIASIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A +LV EGF+ +EE+A V ++E+ I+G +EE E++ RA++ L + + ++ Sbjct: 364 DIEQDFAEMLVEEGFSTLEEVAYVPVNELLEIDGLNEELVEELRSRAKDALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKGGNI 481 + +E+L ++ G++ ++ L G+ T+EDLA VD+L G +E + G + Sbjct: 424 SFEGVEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGVDELEGIEGLTEERAGEL 481 >gi|212709946|ref|ZP_03318074.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM 30120] gi|212687458|gb|EEB46986.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM 30120] Length = 502 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 207/485 (42%), Positives = 315/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTREITLEAAQFEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 364 ETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL+ G + Sbjct: 424 IELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATHGICTLEDLAEQGIDDLIDIEGLNNE 483 Query: 477 KGGNI 481 K G + Sbjct: 484 KAGEL 488 >gi|319944110|ref|ZP_08018388.1| N utilization substance A [Lautropia mirabilis ATCC 51599] gi|319742604|gb|EFV95013.1| N utilization substance A [Lautropia mirabilis ATCC 51599] Length = 496 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/473 (43%), Positives = 320/473 (67%), Gaps = 10/473 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + DA+A EK++ RDVV + + ++ A + Y DIRV I+ E G FR + Sbjct: 5 ELLLMVDALAREKNVPRDVVFAALESALASAMKKRYKDEVDIRVAISREDGSYRGFRRWQ 64 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E++++ QI L AR +DP I + + + L ++FGR+ Q+AKQVI+QK+R+A Sbjct: 65 VVPDGELDDHDLQIILSEARKQDPDIQLEEFIEEELEEIEFGRIGAQAAKQVILQKIRDA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++SGT+KRV+ I++ G + + RD+ I +ENLR GDRV+++ Sbjct: 125 EREQIINDFLSRGDSLLSGTIKRVDREGAIIESGRIEARLPRDQMIPKENLRNGDRVRAW 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + RE RGPQ+ LSRT P+F++KLF +EVPEI G++Q++A +RDPG RAK+AV ++D Sbjct: 185 VSRINREGRGPQLFLSRTAPEFIMKLFELEVPEIEQGLLQIRAAARDPGVRAKIAVHATD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +++DE+ Sbjct: 245 SRVDPIGTCVGVRGSRVQAVTQELAGERVDIVLWSEDPAQFVIGALAPANVSSILVDEER 304 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF---F 362 ++V+V ++ L+LAIG G+NVRLAS+LTGW I++++ EE + +K +ER F Sbjct: 305 HVMDVVVDEDNLALAIGTGGRNVRLASELTGWQINLMSAEE---SEKKQEDERAAIRGVF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VD +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR L I Sbjct: 362 MERLDVDAEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVNELRERARNALLTQAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 ++K+ E +++L S+ G+D ++ V L E ++T +DLA +VD+L+ +E Sbjct: 422 ATEEKLNE--TADDLLSLEGMDRELAVKLAEANVRTRDDLAELAVDELIEITE 472 >gi|91792366|ref|YP_562017.1| transcription elongation factor NusA [Shewanella denitrificans OS217] gi|91714368|gb|ABE54294.1| NusA antitermination factor [Shewanella denitrificans OS217] Length = 499 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/482 (40%), Positives = 311/482 (64%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRRWM 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E +EN +I+L+ AR +P I+ G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVDDQGEALENPYSEITLEAARYEEPGIEPGQYIEDQIDSVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F +K GEI++G VK+ NV+VDLGN +DGV+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQVVEQFIEKEGEIVTGIVKKSSRENVVVDLGNNADGVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+R+ P+ +++LF +EVPEIY+ ++++ +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRSKPEMLIELFRVEVPEIYDEMIEIMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDENPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVIDLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A+ VD A +L EGF +EE+A V +E+ +I+GFD + ++ RA+ + + Sbjct: 364 VSALEVDTDFATVLAEEGFTSLEEIAYVPEAELLAIDGFDSDIVETLRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGG 479 ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ +E K G Sbjct: 424 ATEEALDGAEPSEDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIEIEELTEAKAG 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|145298043|ref|YP_001140884.1| transcription elongation factor NusA [Aeromonas salmonicida subsp. salmonicida A449] gi|142850815|gb|ABO89136.1| transcription elongation factor nusA [Aeromonas salmonicida subsp. salmonicida A449] Length = 500 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/467 (41%), Positives = 302/467 (64%), Gaps = 4/467 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 4 EILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYETYRRWV 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + +EN +I+L+ A+ P I +G V D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VVADQAAMENPYGEITLEAAQIEQPEIQLGDYVEDQIDSVTFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR++ Sbjct: 124 AERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDRIR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK++V + Sbjct: 184 GLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKISVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++DE Sbjct: 244 NDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + F Sbjct: 304 DNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKHQAENDRILTLFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 A+++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L + Sbjct: 364 SALDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDVLTTKALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + + SE+L ++ G+ + AL G+ T+EDLA +DDL Sbjct: 424 KEESLDGVEPSEDLLNLAGLGRDMAYALAARGVGTLEDLAEQGIDDL 470 >gi|300721537|ref|YP_003710812.1| transcription pausing L factor [Xenorhabdus nematophila ATCC 19061] gi|297628029|emb|CBJ88578.1| transcription pausing; L factor [Xenorhabdus nematophila ATCC 19061] Length = 502 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 315/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV T +I+L A+ DP I++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVTLPTREITLDAAKFEDPEIELGSYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 304 TMDVAVENSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V I+E+ ++EG DEE+ ++ RA+ L Sbjct: 364 DTFTKHLDIDEDFATVLVEEGFSTLEELAYVPINELLAVEGLDEESVEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 +++ ++ + + +E+L ++PG++ + L +GI T+EDLA +DDL G ++ Sbjct: 424 LELAQKESLSDQQPAEDLLNLPGMERTLAFNLAAHGICTLEDLAEQGIDDLSDIEGLNDE 483 Query: 477 KGGNI 481 K G + Sbjct: 484 KAGEL 488 >gi|225677161|ref|ZP_03788159.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590785|gb|EEH12014.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 523 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 207/519 (39%), Positives = 330/519 (63%), Gaps = 30/519 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAYQKYGSKSKIVVNIDRNTGKVTSYRKL 81 Query: 67 EVVEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +V+++ N Y I+L A+ IG VS+ L ++ + + A+Q I Q Sbjct: 82 KVIDDESNREENTEYES-ITLTQAKLIKEDAKIGDTVSELLS-LNTDLASARIAQQKIAQ 139 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD Sbjct: 140 IIKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTKAYLPLRNLTGGESFREGD 199 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+A Sbjct: 200 KVKTYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVA 259 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV+ Sbjct: 260 VFSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVI 319 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 320 IDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSA 379 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAE 439 Query: 421 DITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAG------CSVDDLLGW 473 + ++++ LG+ +++ ++ ID+KI AL ++ IKT+ED+A CS+ L Sbjct: 440 NDRKIEELKSLGMEDDVINLTLSIDNKI--ALSKHDIKTLEDIADLSSYEFCSI---LSS 494 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 S + N E KD V+S+II AR K+G I Sbjct: 495 SADNKMNSENL----------KDTVDSIIIEARKKLGLI 523 >gi|78485466|ref|YP_391391.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2] gi|78363752|gb|ABB41717.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2] Length = 495 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/469 (41%), Positives = 302/469 (64%), Gaps = 5/469 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + ++ EK ++++++ + ++ A R + D RV I+ TGD FR E Sbjct: 4 EVLAVVEIMSNEKGVEKEIIFEAIEAALATATRKSHNDEIDARVSIDRHTGDYETFRRWE 63 Query: 68 VVE---EVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+E E+E++ I A D +P I+ G + +P+ ++FGR+ Q+AKQVIIQKVR Sbjct: 64 VIEDDVEIEDHVGWYIRHMDAVDIEPHIEPGEFIEEPMESIEFGRIGAQTAKQVIIQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + E+ ++GEI++G VKR++ G+VI+DLG N D VI R E I+REN + GDRV Sbjct: 124 EAERKKVVEEYSKRIGEILTGQVKRIDRGDVILDLGDNVDAVIPRSELINRENFKMGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ DV RGPQ+ +SR + +++LF +EVPEI + ++ + + +RD G RAK+AV Sbjct: 184 RAYVQDVSFRPRGPQIFMSRACKEMLMELFKIEVPEIGDDLIDIMSAARDVGLRAKVAVR 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D +DP+GACVGMRG RVQAV EL E+IDI++W + A FVINA+ PA VT +++D Sbjct: 244 ANDPRLDPIGACVGMRGGRVQAVTNELNGERIDIILWDSNDAQFVINAMAPAEVTSIMVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V EQLS AIG+ GQN+RLA++LTGW +++++E + + + + + F Sbjct: 304 EDKHTMDLAVDDEQLSQAIGKNGQNIRLATELTGWELNVMSETDMAAKHETESKGQMDLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LVAEGF +EE+A V +E+ IEGFDEE ++ RA++ L I Sbjct: 364 VNGLEVDEELAEVLVAEGFTTLEEVAYVPAAEMLEIEGFDEEIVAALKERAKDALLTQAI 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++K +++L + G+ ++ L GI T EDLA D+LL Sbjct: 424 ANEEKTAMAEPAQDLLDLEGMTEEMAKTLASKGIITQEDLAELGTDELL 472 >gi|42521112|ref|NP_967027.1| transcription elongation factor NusA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410853|gb|AAS14961.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 520 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/512 (39%), Positives = 329/512 (64%), Gaps = 19/512 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKL 81 Query: 67 EVVE----EVENYTCQ-ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V++ E EN C+ I+L A+ +G VS+ L ++ + + A+Q I Q Sbjct: 82 KVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVSELLS-LNTDLASARIAQQKIAQV 140 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+ Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDK 200 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+YI V+ G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV Sbjct: 201 VKAYIQTVKHSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++ Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ + Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440 Query: 422 ITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++++ LG+ +++ ++ ID+KI AL ++ IKT+ED+A S + + + Sbjct: 441 DRKIEELKSLGMEDDVINLTLSIDNKI--ALSKHDIKTLEDIADLSSYEFCSILSSSSDS 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E KD V+S+II AR K+G I Sbjct: 499 KEDL----------KDTVDSIIIEARKKLGLI 520 >gi|268592826|ref|ZP_06127047.1| L factor [Providencia rettgeri DSM 1131] gi|291311611|gb|EFE52064.1| L factor [Providencia rettgeri DSM 1131] Length = 502 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 314/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTREITLEAAQYEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 364 DTFTKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIDGLDEETVEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+ G + Sbjct: 424 IELAQKESLGDNQPAEDLLNLEGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIEGLDDE 483 Query: 477 KGGNI 481 K G + Sbjct: 484 KAGTL 488 >gi|301063436|ref|ZP_07203968.1| transcription termination factor NusA [delta proteobacterium NaphS2] gi|300442375|gb|EFK06608.1| transcription termination factor NusA [delta proteobacterium NaphS2] Length = 474 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/410 (46%), Positives = 271/410 (66%), Gaps = 4/410 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L ++ D V+ EK +D+ V++ + ++++ AAR YG D+ V N E G++ F E Sbjct: 4 DLRKVIDQVSREKGVDQAVLIGALEEAVKAAARKKYGNEYDLEVIYNEEMGEVEAFEFKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE EN QISLK A + DP +IG + + P FGR+A QSAKQVI+Q+++EAER Sbjct: 64 VVEETENPNLQISLKEALELDPETEIGDSLGIKMDPDTFGRIAAQSAKQVIMQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y +F D+ GEI++G V+R + G++IV+LG ++ + E I RE+ + GDRV++YI Sbjct: 124 DIVYDDFIDRRGEIVNGIVQRFDRGSIIVNLGRAEAELPHKEQIPRESYKQGDRVRAYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVR+ RGPQ++LSRTHP + LF EVPEI GIVQ+ V+R+PG RAK+AV S D Sbjct: 184 DVRKISRGPQIILSRTHPNIVAILFENEVPEISEGIVQIIQVAREPGGRAKIAVSSKDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G RVQAVV ELR EKIDIV W PDSA F+ NAL PA +T+V++DED Sbjct: 244 VDPVGACVGMKGRRVQAVVQELRGEKIDIVTWDPDSAKFICNALAPAEITRVIVDEDNHS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QLSLAIG+RGQNVRLA++LTGW +D++ E + + + F + + Sbjct: 304 MEVVVPDDQLSLAIGKRGQNVRLAAKLTGWRLDVVGETKYNETLKDGF----RSLLDLNG 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 V E IA L F ++A + ++ ++G +E A + A YL Sbjct: 360 VGEKIATELYDADFRSARDIAGSTVEDLMVVKGISQEKAEALIAEANAYL 409 >gi|254428350|ref|ZP_05042057.1| NusA N-terminal domain family [Alcanivorax sp. DG881] gi|196194519|gb|EDX89478.1| NusA N-terminal domain family [Alcanivorax sp. DG881] Length = 502 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/482 (41%), Positives = 318/482 (65%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ +G+ FR+ Sbjct: 4 EILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRVSGNAKSFRVW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV EE+ + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 HVVPDEELYEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + E++D++G+++SGTVK+ ++I+DLG N++ +I R+ I RE +R DR++ Sbjct: 124 AERRQIVEEYRDRIGDLVSGTVKKASRDSIILDLGGNAEALITREHMIPREAVRQNDRIR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V E RGPQ+ SR P +++LF +EVPEI ++++K +RDPGSRAK+AV + Sbjct: 184 AYLLGVNEENRGPQLFASRACPDMLIELFKIEVPEIGEELIEIKGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +V+DE Sbjct: 244 NDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Q F Sbjct: 304 ESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAETKQEEEAEQALQTF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L + Sbjct: 364 INELDVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALLTKAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGG 479 ++K + +E+L ++ G+D ++ V L GI TMEDLA +VDDLL G SE + Sbjct: 424 VSEEKFEQAEPAEDLLNMEGMDRELAVELASRGIVTMEDLAEQAVDDLLEIEGLSEERAA 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|83644100|ref|YP_432535.1| transcription elongation factor NusA [Hahella chejuensis KCTC 2396] gi|83632143|gb|ABC28110.1| N utilization substance protein A [Hahella chejuensis KCTC 2396] Length = 497 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 314/472 (66%), Gaps = 4/472 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + +AV+ EK +D+DV+ + ++ A + Y +DIRV+I+ +TG+ FR Sbjct: 4 EILLVVEAVSNEKGVDKDVIFEAIELALATATKKRYEDEEADIRVDIDRKTGEYQAFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ V +++L+ + + G + + + FGR+ Q+AKQ+I+QKVRE Sbjct: 64 LVVDNDAVPALGTELTLEEVHESGLDLKPGDTHEEEVEAVAFGRIGAQAAKQIIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +++KVG++++G VK+V N+IVDLG N++ ++ +D+ ISRE R GDRV+ Sbjct: 124 AERTKIVDSYREKVGDLVNGVVKKVTRDNIIVDLGANAEALLPKDQLISRETYRVGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + D+R + RGPQ++LSR Q +++LF +EVPEI ++++KA +RDPGSRAK+AV + Sbjct: 184 ALLLDIRMDNRGPQLILSRACSQMLIELFRIEVPEIAEEVIEIKAAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV +EL +E+IDIV+W + A VINA+ PA V +++DE Sbjct: 244 NDGRIDPVGACVGMRGSRVQAVSSELGNERIDIVLWDDNPAQLVINAMAPAEVASIIMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L++AIGR GQNV+LAS++TGW I+++TEE+ ++++F F+ Sbjct: 304 DSHTMQVAVSEDNLAMAIGRSGQNVKLASEMTGWEINVLTEEQAGQQQEEEFRRYVDCFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + V+E +A +L +EGF +EE+A V + E+ +I+ FDE+ E++ RA+ L + Sbjct: 364 DQLGVEEDLAEVLASEGFTSLEEVAYVPMEEMLAIDDFDEDLVTELRKRAKNVLINQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 ++++ + +E+L ++ G+D + L GI TMEDLA SVDDLL E Sbjct: 424 SEEQLEKAEPAEDLLNMEGMDRHLAFVLASKGIVTMEDLAEQSVDDLLDIDE 475 >gi|119944578|ref|YP_942258.1| NusA antitermination factor [Psychromonas ingrahamii 37] gi|119863182|gb|ABM02659.1| NusA antitermination factor [Psychromonas ingrahamii 37] Length = 499 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 188/468 (40%), Positives = 304/468 (64%), Gaps = 4/468 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ E+G FR Sbjct: 4 EILLVVEAVSNEKGLPREAIFQALESALAIATKKKYENDIEVRVEIDRESGKFDTFRRWL 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+E ++EN +++ + A P I +G + D + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VLEPDAKMENPCKEMTFEAAEYETPEIKVGDYIEDEIESVTFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++ ++ GE+I+G VKR+ N+++DLG N++ VI RDE + REN RPGDR++ Sbjct: 124 AERAQVVAQYAEQEGELITGIVKRMNRDNILLDLGGNAEAVIFRDEMLPRENFRPGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++ VR E RG Q+ ++RT P+ +++LF +EVPEI ++ + +RDPGSRAK+AV S Sbjct: 184 GLLFAVRPEARGAQLFVTRTQPEMLIELFRLEVPEIAEEMIDLMGAARDPGSRAKIAVKS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV +EL E++DI++W + A + INA+ PA V VV+DE Sbjct: 244 NDKRIDPVGACVGMRGARVQAVSSELGGERVDIILWDENPAQYAINAMSPADVVSVVIDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V ++ L+ AIGR GQNVRLASQLTGW ++++T + Q + F Sbjct: 304 DAHSMDIAVEEDNLAQAIGRNGQNVRLASQLTGWELNVMTVVQLREKHQAEAASVISVFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +A+ +DE A +LV EGF+ +EE+A V ++E+ +I+G DE E++ RA+++L + Sbjct: 364 EALEIDEEFAAVLVEEGFSSLEEIAYVPLNELLAIDGLDEALIDELRVRAKDFLATKALV 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ + + +++L ++ G++ + L GI T+E+LA +VDDLL Sbjct: 424 DEEGLEDTKPADDLLALEGLEGHLAYVLASKGIITLENLAEQAVDDLL 471 >gi|290473446|ref|YP_003466313.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004] gi|289172746|emb|CBJ79517.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004] Length = 502 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 314/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEV T +I+L+ A+ DP +++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVTLPTREITLEAAKYEDPEMELGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEI++ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++D A +LV EGF+ +EELA V I+E+ +IEG DEET ++ RA+ L Sbjct: 364 DTFTKHLDIDVDFATVLVEEGFSTLEELAYVPINELLAIEGLDEETVEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 +++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL G S+ Sbjct: 424 LELAQKESLGDQQPAEDLLNLSGMDRTLAFNLAAHGICTLEDLAEQGIDDLSDIEGLSDE 483 Query: 477 KGGNI 481 K G + Sbjct: 484 KAGEL 488 >gi|119470821|ref|ZP_01613432.1| transcription elongation factor NusA [Alteromonadales bacterium TW-7] gi|119446048|gb|EAW27327.1| transcription elongation factor NusA [Alteromonadales bacterium TW-7] Length = 499 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 187/474 (39%), Positives = 313/474 (66%), Gaps = 6/474 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--- 64 E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVSIDRKTGDYDTFRRWQ 63 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + EV+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAEVLEDGSLENPYSEITLEAAQVEEPDLQLGDFVEEQIDSIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER +KD+VGE+++G VK+ ++++DLGN ++ VI RD+ + REN RPGDR Sbjct: 124 REAERALVVDAYKDQVGELVTGVVKKATRDSIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +VL Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMSPAEVASIVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRTKNEAESDKLLNL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLDIDDEFATLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE 477 >gi|127513756|ref|YP_001094953.1| transcription elongation factor NusA [Shewanella loihica PV-4] gi|126639051|gb|ABO24694.1| NusA antitermination factor [Shewanella loihica PV-4] Length = 499 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 194/467 (41%), Positives = 304/467 (65%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG+ FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ AR +P I +G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F +K GE+I+G VK+ +V+VDLGN +D V+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIVNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A++VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ + + Sbjct: 364 VSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + SE+L ++ G++ + L G+ T+EDLA +DD Sbjct: 424 ASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDD 470 >gi|261345162|ref|ZP_05972806.1| L factor protein [Providencia rustigianii DSM 4541] gi|282566853|gb|EFB72388.1| L factor protein [Providencia rustigianii DSM 4541] Length = 502 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 205/485 (42%), Positives = 313/485 (64%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L A+ DP + +GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTMPTREITLDAAQFEDPELQLGGYVEDQIESVVFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 364 ETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+ G + Sbjct: 424 IELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIEGLNNE 483 Query: 477 KGGNI 481 K G + Sbjct: 484 KAGEL 488 >gi|293604237|ref|ZP_06686645.1| N utilization substance A [Achromobacter piechaudii ATCC 43553] gi|292817462|gb|EFF76535.1| N utilization substance A [Achromobacter piechaudii ATCC 43553] Length = 492 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 208/483 (43%), Positives = 308/483 (63%), Gaps = 15/483 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPDIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 YVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S+NRQ+ ER+ Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLNRQE--VERSGLRTT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKG 478 I +++ L +++L + G+ ++ L E + T +DLA + D+L G +E + Sbjct: 421 IAQEER---LETAQDLLELEGMTQELAAKLAERQVHTRDDLAELATDELAEIAGLTEQEA 477 Query: 479 GNI 481 ++ Sbjct: 478 SDL 480 >gi|329915249|ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gi|327544954|gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 197/466 (42%), Positives = 302/466 (64%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ +TG FR Sbjct: 4 EVLLLVDALAREKNVDKDIVFGALEHALSQATKKRYEGDVDIRVTIDRDTGLFESFRRWH 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + +I A ++ I++ + +P+ +DFGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEILHFEALEQISDIEVDDHIEEPIESVDFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILQDFLERGDSMVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +I V R RGPQV+LSRT P+F++KLF +EVPEI G++ +K+ +RD G RAK+AVF+S Sbjct: 184 FILRVDRNARGPQVILSRTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ + L ++ G+D LG G+KT+ +G + D+ Sbjct: 424 EEGLE--GMDDALATMEGMDRVTAGKLGLAGVKTLAAFSGLAYDEF 467 >gi|332283701|ref|YP_004415612.1| transcription elongation protein [Pusillimonas sp. T7-7] gi|330427654|gb|AEC18988.1| transcription elongation protein [Pusillimonas sp. T7-7] Length = 494 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 212/514 (41%), Positives = 323/514 (62%), Gaps = 30/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + +++ A + + +DIRV I+ +G+ FR Sbjct: 4 EILLLVDALAREKNVGREVVFGALENALASAMKKRFKEDADIRVTIDRMSGEHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I++G + + L P +FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDDAGLQEPDQQELLSDAQEIVPGIEVGEYIEEQLEPEEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ IISGTVKR++ G+ I++ G + + R ETI +EN+R GDR+++ Sbjct: 124 AEREQVLNDFLERGENIISGTVKRMDKGDAIIETGKIEARLPRSETIPKENIRIGDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 WVLKVDHTARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+W+ D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWAEDPAEFVIGALAPAHVDSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT---QF 361 ++V+V E L AIG RGQNVRLAS+LTGW I+I+T EE S NRQ++ ERT Q Sbjct: 304 KHAMDVVVDAENLPKAIGARGQNVRLASELTGWQINIMTPEE-SQNRQEE--ERTGLRQA 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FITKLDVDEEVADILIDEGFTGLEEIAYVPLQELLEIEAFDEDTINELRTRARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I +++++ V+++L + G++ ++ L EN + T++DLA + D+L S Sbjct: 421 IAQEERVQ--TVAQDLLEVEGMNPELVAKLAENEVLTLDDLAELATDELAEIS------- 471 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +D+ MI+ AR W ++E Sbjct: 472 ----------GMSEDEASQMIMRARAH--WFDEE 493 >gi|190571750|ref|YP_001976108.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019234|ref|ZP_03335041.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190358022|emb|CAQ55491.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995343|gb|EEB55984.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 517 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 202/513 (39%), Positives = 330/513 (64%), Gaps = 24/513 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D +++++ + +I+ A+ YG+ S I V I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQL 81 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V+ E EN I L A+ +G +S+ L ++ V+ + A+Q I + ++ Sbjct: 82 KVINDESNENECDLIKLTQAKLIKEDAKVGDTISE-LISLNTDLVSARIAQQKISEIIKN 140 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E +QY EFKDKVGE+ G VK+VEY ++I+D+ + I E+ R GD+VK+ Sbjct: 141 EELKKQYEEFKDKVGEMRYGIVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVKA 200 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V+R G Q++LSRTH F+ L + EVPEI +G++ +K ++RD GSR+K+AVFSS Sbjct: 201 YIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLITIKGIARDAGSRSKIAVFSS 260 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +IDPVGACVG++G R++ ++ EL EKID++ +S D F+I A+ PA V+KV++DE+ Sbjct: 261 DRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDEN 320 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+F++ + F + Sbjct: 321 ENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFAE 380 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA YL+ + Sbjct: 381 ALNLEEIMGQLLVTEGFSSVEDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDRK 440 Query: 425 QKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ LG+ +++ ++ ID+KI AL ++ IKT+ED+A DL + + Sbjct: 441 IEELKNLGMEDDVINLALSIDNKI--ALSKHNIKTLEDIA-----DLSNY---------E 484 Query: 484 FDGFLSSLGTPKDQVES----MIIHARYKMGWI 512 F LSS KD ++ +II AR K+G I Sbjct: 485 FCSILSSSTNNKDNLKDTADLIIIEARKKLGLI 517 >gi|152978792|ref|YP_001344421.1| transcription elongation factor NusA [Actinobacillus succinogenes 130Z] gi|150840515|gb|ABR74486.1| NusA antitermination factor [Actinobacillus succinogenes 130Z] Length = 511 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 199/482 (41%), Positives = 308/482 (63%), Gaps = 19/482 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-----------DIRVEINPE 56 E+L A+AV+ EK++ ++V+ + +I + + + D+RV I+P+ Sbjct: 4 EILLAAEAVSNEKALPKEVIFEALEAAIALSTKKKHAQKQERLGVDKPSEIDVRVAIDPK 63 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG+ FR VVEEV N T +I+L+ AR DP+I +G VV D + + F R+ +Q+A+Q Sbjct: 64 TGEFDTFRRWTVVEEVVNPTREITLEAARLDDPAIQLGDVVEDQIESVAFDRITMQTARQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GN------SDGVIRRDE 169 VI K+R+AER + +F + G+I+ GTVK+V +++++L GN ++ VI R++ Sbjct: 124 VISTKIRDAERSKVVEQFLSEEGKIVIGTVKKVNRESIVLELLGNKEDPAKAEAVIARED 183 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I REN RPGDRV+ +Y V E +G Q+ ++R+ P + +LF +EVPEI I+++K Sbjct: 184 MIPRENFRPGDRVRGVLYKVSPESKGAQLFVTRSKPIMLEELFRLEVPEIGEQIIEIKGS 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RD GSRAK+AV SSD IDPVGACVGMRGSRVQ++ EL E++DIV+W + A +VIN Sbjct: 244 ARDAGSRAKIAVKSSDKRIDPVGACVGMRGSRVQSITNELGGERVDIVLWDENPAQYVIN 303 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T EE + Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEASNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELAQ 363 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-E 408 Q + N+ FM A+ +DE A +LV EGF +EELA V +SE+ +I+G ++E V E Sbjct: 364 KHQAEDNKILNLFMTALEIDEDFAQILVDEGFTKLEELAYVSVSELTAIDGLEDEDLVEE 423 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 +Q RA++ + + +K + + + L ++ G++ + L E I T+E+LA VD Sbjct: 424 LQTRAKDAITAAALAEEKALENAQIEDRLLNLEGMERHLAFKLAEKQITTLEELAEQGVD 483 Query: 469 DL 470 DL Sbjct: 484 DL 485 >gi|119504358|ref|ZP_01626438.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2080] gi|119459866|gb|EAW40961.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2080] Length = 490 Score = 366 bits (940), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 306/463 (66%), Gaps = 4/463 (0%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 +A+AV+ EK + D++ + ++ AA+ Y +DI V I+ +G+ R VV + Sbjct: 2 VAEAVSAEKGVSEDIIFEAIELALATAAKKRYEEEADIEVVIDRVSGEYQTRRRWLVVPD 61 Query: 72 VEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E Q + + A + D ++ IG V + + DFGR+A Q+AKQVI+Q+VR+AER + Sbjct: 62 TELALLGTQFTTEEAAEADANLQIGDVHEEIIENADFGRIAAQTAKQVIVQRVRDAERAQ 121 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYD 188 ++D++GE+++G VK+V NVIVDLGN ++G++ R E + RE R DRV++ + + Sbjct: 122 IVDLYRDRIGELLAGIVKKVTRDNVIVDLGNNAEGLLPRGELVGRETFRINDRVRAILSE 181 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + E RGPQ+++SR + + +LF +EVPEI G++Q++A +RDPGSRAK+AV + D I Sbjct: 182 INTESRGPQLVMSRACREMLTELFKIEVPEISEGVIQIRAAARDPGSRAKIAVKTGDQRI 241 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED + Sbjct: 242 DPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDEDSNTM 301 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 EV V ++ L+ AIGR GQNVRLAS LTGWTI++++ +E ++ + E + FM A++V Sbjct: 302 EVAVAEDNLAQAIGRGGQNVRLASDLTGWTINVMSTDEAVERQEAEAVEIIETFMNALDV 361 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE +A +LV EGF ++E+A V + E+ IEGFDE + E++ RA++ L + I ++K+ Sbjct: 362 DEDVAVVLVEEGFTTLDEVAYVPLEEMMGIEGFDEAISEELRARAKDALLTMAIATEEKL 421 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ +E+L ++ G++ + GI TMEDLA VDDL+ Sbjct: 422 -DVEPAEDLLTMDGMERHLAFVFASRGIVTMEDLAEQGVDDLM 463 >gi|317402909|gb|EFV83450.1| N utilization substance protein A [Achromobacter xylosoxidans C54] Length = 492 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 206/483 (42%), Positives = 309/483 (63%), Gaps = 15/483 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAVEIVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ I++ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIIETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S+NRQ+ ER+ Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLNRQE--VERSGLRAT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMNKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKG 478 I +++ L +++L + G+ ++ L E + T +DLA + D+L G +E + Sbjct: 421 IAQEER---LETAQDLLELEGVTPELAAKLAERQVHTRDDLAELATDELAEIAGLTEQEA 477 Query: 479 GNI 481 ++ Sbjct: 478 SDL 480 >gi|157368735|ref|YP_001476724.1| transcription elongation factor NusA [Serratia proteamaculans 568] gi|157320499|gb|ABV39596.1| NusA antitermination factor [Serratia proteamaculans 568] Length = 502 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 194/485 (40%), Positives = 306/485 (63%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNERT 359 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L Sbjct: 364 DTFTKHLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 + + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL G S+ Sbjct: 424 LALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIEGLSDE 483 Query: 477 KGGNI 481 + G + Sbjct: 484 QAGEL 488 >gi|110833189|ref|YP_692048.1| transcription elongation factor [Alcanivorax borkumensis SK2] gi|110646300|emb|CAL15776.1| transcription elongation factor [Alcanivorax borkumensis SK2] Length = 525 Score = 366 bits (939), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 200/482 (41%), Positives = 317/482 (65%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ E+G+ FR+ Sbjct: 27 EILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRESGNARSFRVW 86 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV EE+ + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+QKVRE Sbjct: 87 HVVPDEELFEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQKVRE 146 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + E++D++G+++SGTVK+ ++++DLG N++ +I R+ I RE +R DRV+ Sbjct: 147 AERRQIVEEYRDRIGDLVSGTVKKASRDSIVLDLGGNAEALITREHMIPREAVRQNDRVR 206 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V E RGPQ+ SR P +V+LF +EVPEI ++++K +RDPGSRAK+AV + Sbjct: 207 AYLLGVNEENRGPQLFASRACPDMLVELFKIEVPEIGEELIEIKGAARDPGSRAKIAVKT 266 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +V+DE Sbjct: 267 NDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASIVMDE 326 Query: 304 DVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Q F Sbjct: 327 ESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAESKQEQEAEQALQTF 386 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L + Sbjct: 387 INELEVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALLTKAL 446 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGG 479 ++K + +E+L ++ G+D ++ V L I TMEDLA +VDDLL G SE + Sbjct: 447 VSEEKFDQAEPAEDLLNMEGMDRELAVELASRDIVTMEDLAEQAVDDLLEIEGLSEERAA 506 Query: 480 NI 481 + Sbjct: 507 EL 508 >gi|270265058|ref|ZP_06193321.1| transcription elongation protein NusA [Serratia odorifera 4Rx13] gi|270040992|gb|EFA14093.1| transcription elongation protein NusA [Serratia odorifera 4Rx13] Length = 502 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 194/485 (40%), Positives = 306/485 (63%), Gaps = 11/485 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDEDNC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNERT 359 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHAAI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L Sbjct: 364 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 + + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL G S+ Sbjct: 424 LALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIEGLSDE 483 Query: 477 KGGNI 481 + G + Sbjct: 484 QAGEL 488 >gi|332528893|ref|ZP_08404863.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624] gi|332041650|gb|EGI78006.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624] Length = 511 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 193/477 (40%), Positives = 310/477 (64%), Gaps = 9/477 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ELL + +A++ EK+++RDVV + ++ +A + LY DIRV ++ +TG Sbjct: 1 MSSIKNSELLMLVEAISREKNVERDVVFGAVEAALAQATKKLYEGDVDIRVAVDRDTGLY 60 Query: 61 SLFRLLEVVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 FR VV + +I L A+++ P I++ + + + + GR+ +AKQV Sbjct: 61 ETFRRWHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEEAVESVPIGRIGAMAAKQV 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 I+QK+R+AER+ +F + +I G+VKR++ G++IV+ G +G ++R+E I +EN R Sbjct: 121 ILQKIRDAEREMLLNDFMSRGEKIFVGSVKRMDKGDLIVESGRVEGRLKRNEMIPKENFR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRV++ I +V EQRGP +LLSR+ P+FM++LF EVPEI G++++K+ +RD GSRA Sbjct: 181 AGDRVRAMIMEVNTEQRGPAILLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ Sbjct: 241 KIAVLSHDKRVDPIGTCVGVRGARVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Sbjct: 301 SIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETTT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM+ ++VDE IA +L+ EGF +EE+A V + E+ IE FDE+T E++ RA++ L Sbjct: 361 LRKLFMEKLDVDEEIADILITEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDAL 420 Query: 418 EGIDITLQKKIRELGVSEELCSI----PGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++I ++ + E VS++L + + + + L + G+ T++DLA ++D+L Sbjct: 421 LTLEIAREESVDE--VSQDLRDLQFQGKPLSADVIAKLADGGVHTLDDLADLAIDEL 475 >gi|304386889|ref|ZP_07369151.1| transcription termination/antitermination protein NusA [Neisseria meningitidis ATCC 13091] gi|304339048|gb|EFM05140.1| transcription termination/antitermination protein NusA [Neisseria meningitidis ATCC 13091] Length = 503 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 214/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 67 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 126 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 185 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 186 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 243 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 244 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 304 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 363 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 364 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 422 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ Sbjct: 423 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELI 477 >gi|297180949|gb|ADI17152.1| transcription elongation factor [uncultured gamma proteobacterium HF0070_08D07] Length = 506 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 204/479 (42%), Positives = 302/479 (63%), Gaps = 18/479 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + D+V+ EK + ++ + + ++ A R YG D RV I+ G FR Sbjct: 4 EILMVVDSVSNEKGVPKETLFEAVELALAVATRKRYGETFDFRVAIDRNDGSYETFRRWT 63 Query: 68 VVEEVE-----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VV+E N ++L A+ +D G V + + + FGR+A Q+AKQ Sbjct: 64 VVDEENMVDEEGEEKEFNPDAHLNLSQAQIKDSESSFGSVFEEQVESVGFGRIAAQTAKQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISREN 175 VI+QKVREAERD+ + K+ I+SGTVK++ +VIVDLGN ++G++ R+ I RE Sbjct: 124 VIVQKVREAERDQIAAAYDGKINSIVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREI 183 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 R GDR+++ + +++ + RGPQ++LSRT Q +V+LF +EVPEI ++Q+ +RDPGS Sbjct: 184 FRVGDRLRAMLVEIKSDNRGPQLMLSRTSRQMLVELFKIEVPEISEDVIQILGAARDPGS 243 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA Sbjct: 244 RAKIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAE 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +VLDE+ ++V V +E L+ AIGR GQNVRLAS L+GW+++I+TE+E + QK Sbjct: 304 VASIVLDEESHSMDVAVTEENLAQAIGRGGQNVRLASDLSGWSLNIMTEQEAA---QKQD 360 Query: 356 NERTQF---FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +E F F++ ++VDE +A LV EGF +EE+A V I E++SIEGFDEE E++ R Sbjct: 361 DEAKSFIDDFIKYLSVDEDVAGALVEEGFTTLEEVAYVPIEELSSIEGFDEEIVSELRDR 420 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 A++ L I ++ G +E+L + G+ ++ L N + +MEDLA SV +L+ Sbjct: 421 AKDSLLTKAIADEEANNLAGPNEDLLQMEGMTVELAKILSRNSVSSMEDLAELSVSELI 479 >gi|254995056|ref|ZP_05277246.1| transcription elongation factor NusA [Anaplasma marginale str. Mississippi] Length = 512 Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 213/530 (40%), Positives = 331/530 (62%), Gaps = 39/530 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG + Sbjct: 4 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVV 62 Query: 61 SLFRLLEVVE---------------EVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPM 104 S+ R VV EV Y ++S VA +D + +G ++ +PLPP+ Sbjct: 63 SISRQALVVNDDMSFDSEQYGIPLGEVSKYKLVKVSDAVADGKD--VKVGDILFEPLPPV 120 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 D + + A++ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G Sbjct: 121 DVDYNSAKVARRKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGY 180 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + TI E RP DRVK + +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GI Sbjct: 181 LPVYNTIRGEVFRPNDRVKD-VEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGI 239 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW-SPD 282 V +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+ELR E VV+ P Sbjct: 240 VSIKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELRGEDRRCVVFIRPR 299 Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V + A V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I Sbjct: 300 E---VCSERDSAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVI 356 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 +E +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+ Sbjct: 357 GDETESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFN 416 Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDL 462 EE AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+ Sbjct: 417 EEIAVELKKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDI 476 Query: 463 AGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 A D+ F + K+QV+S+I+ +R +MGWI Sbjct: 477 ASMCTDE--------------FYDMVPKARLSKEQVDSIILESRKRMGWI 512 >gi|315126157|ref|YP_004068160.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913] gi|315014671|gb|ADT68009.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913] Length = 499 Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 187/474 (39%), Positives = 311/474 (65%), Gaps = 6/474 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--- 64 E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TGD FR Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIDVRVAIDRKTGDYDTFRRWQ 63 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + EV+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAEVLEDGSLENPYSEITLEAAQVEEPDLKMGDYVEEQIESIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER +KD+ GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGDR Sbjct: 124 REAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+ Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRAKNEAESDKLINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE 477 >gi|325136708|gb|EGC59308.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M0579] Length = 500 Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 214/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELI 474 >gi|325204603|gb|ADZ00057.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240355] Length = 500 Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 214/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELI 474 >gi|157376522|ref|YP_001475122.1| transcription elongation factor NusA [Shewanella sediminis HAW-EB3] gi|157318896|gb|ABV37994.1| NusA antitermination factor [Shewanella sediminis HAW-EB3] Length = 499 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 193/482 (40%), Positives = 307/482 (63%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ +TG FR Sbjct: 4 EILLVTEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVEIDRKTGAYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTGEPLENPFSEITLEAAQFEEPEIQLGEYIEDDIESVVFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +FKDK GE+I+G VK+ +V+VDLG N+D V+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQIVDQFKDKEGELITGVVKKSNRESVVVDLGSNADAVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ ++ VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLFAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKVVNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++ VDE A +L EGF +EE+A V SE+ I+GFDE+ ++ RA+ + + Sbjct: 364 VTSLEVDEDFAQVLADEGFTSLEEVAYVPASELMDIDGFDEDIVETLRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENKGG 479 ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ +E K G Sbjct: 424 ASEEALDGAEPSEDLLALEGLERHLAFVFASKGVITLEDLAEQGIDDLIDIEELTEEKAG 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|209694189|ref|YP_002262117.1| transcription elongation factor NusA [Aliivibrio salmonicida LFI1238] gi|208008140|emb|CAQ78282.1| transcription elongation protein NusA [Aliivibrio salmonicida LFI1238] Length = 495 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 189/464 (40%), Positives = 302/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TG + FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +VE+ T +IS++ A+ D +I+IGG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVAQVEHPTLEISIEAAQFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +F D GE+I+G VK+V +IVDLG N++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVIN++ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDEDNN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ + Sbjct: 304 TMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++D A LLV EGF +EE+A V ++E+ +E DEET ++ RA+E L + + ++ Sbjct: 364 DIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDEETVDLLRTRAKEALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +E+L ++ G++ ++ G+ T+EDLA VD+L Sbjct: 424 SLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDEL 467 >gi|261392135|emb|CAX49635.1| transcription elongation protein nusA (N utilization substance protein A; L factor) [Neisseria meningitidis 8013] gi|325134692|gb|EGC57331.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M13399] Length = 500 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|88797622|ref|ZP_01113211.1| N utilization substance protein A [Reinekea sp. MED297] gi|88779794|gb|EAR10980.1| N utilization substance protein A [Reinekea sp. MED297] Length = 503 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 192/472 (40%), Positives = 311/472 (65%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS--DIRVEINPETGDISLFRL 65 E+L + DAVA EK + RDV+ M ++ AA+ D+ V I+ +TG+ FR Sbjct: 10 EILLVVDAVANEKGVSRDVIFDAMELALATAAKKRLDDEGEPDVYVVIDRKTGEYETFRR 69 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EV+ + V Q + + A + D ++ G V + FGR++ Q+AKQ+I+QKVR Sbjct: 70 WEVMGDDVVPELGSQWTTEEAHEVDTNLKPGDVYEVQIENEGFGRISAQAAKQIIVQKVR 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 +AER R ++++VGE+++GTVK+V +I+DLGN ++ V+ RD+ I RE R DRV Sbjct: 130 DAERARIVDNYRERVGEMVTGTVKKVTRDALIIDLGNNAEAVLPRDQMIGREAFRLADRV 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + +++ E RGPQ++LSRT + +V+LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 190 RAVLQEIKSEGRGPQLVLSRTSNEMLVELFRIEVPEIQEELIEIRSCARDPGSRAKIAVK 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+D Sbjct: 250 TNDGRIDPVGACVGMRGSRVQAVSNELGNERVDIILWDDNPAQLVINAMAPAEVASIVMD 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +EV V ++ L++AIGR GQNVRLA+ LTGW I+++TE+E ++++ + F Sbjct: 310 EDTNTMEVAVAEDNLAIAIGRNGQNVRLAADLTGWIINVMTEDEAGARQEQEAGQLVSHF 369 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VD+ +A +LV EGF +EE+A V I+E+ I+GF+E+ E++ RA++ L ++ Sbjct: 370 VEKLGVDDELAMILVEEGFTTLEEVAYVPINEMLDIDGFEEDLVNELRQRAKDELLTQEL 429 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 ++++ E+L + G+ + L NG+ +MED+A S+D+L+ +S Sbjct: 430 ATEERLDSAEPQEDLLGLDGMTDHLARVLASNGVVSMEDVAELSIDELMEFS 481 >gi|15677491|ref|NP_274647.1| transcription elongation factor NusA [Neisseria meningitidis MC58] gi|7226892|gb|AAF41991.1| N utilization substance protein A [Neisseria meningitidis MC58] gi|319410895|emb|CBY91289.1| transcription elongation protein nusA (N utilization substance protein A; L factor) [Neisseria meningitidis WUE 2594] gi|325140713|gb|EGC63227.1| transcription termination/antitermination protein nusA [Neisseria meningitidis CU385] gi|325144892|gb|EGC67179.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240013] gi|325199764|gb|ADY95219.1| transcription termination/antitermination protein nusA [Neisseria meningitidis H44/76] Length = 500 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|260221430|emb|CBA29985.1| Transcription elongation protein nusA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 498 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 194/469 (41%), Positives = 308/469 (65%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR Sbjct: 2 NR-ELLMLVEAISREKNVERDVVLGAVEAALAQATKKLYAGDVDIRVALDRDSGNYETFR 60 Query: 65 LLEVVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + +I L A+++ I++ + +P+ + GR+ +AKQVI+QK Sbjct: 61 RWHVVPDEAGLQLPDQEILLFEAKEQIADIEVDEYIEEPVASVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGEKIFVGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRTGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIVLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA VT +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + Sbjct: 301 DEERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKLANETDSGRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++ Sbjct: 361 FMEKLDVDEEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVHELRNRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + E VS+ L + G+ ++ L + G+ T ++LA +VD+L Sbjct: 421 IAHEESVEE--VSQNLRDLEGLTPELIGKLADGGVHTRDELADLAVDEL 467 >gi|325205639|gb|ADZ01092.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M04-240196] Length = 500 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 212/477 (44%), Positives = 322/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|161572974|ref|YP_208351.2| transcription elongation factor NusA [Neisseria gonorrhoeae FA 1090] gi|240014533|ref|ZP_04721446.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI18] gi|240121055|ref|ZP_04734017.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID24-1] Length = 500 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 318/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 474 >gi|293398726|ref|ZP_06642902.1| N utilization substance protein A [Neisseria gonorrhoeae F62] gi|59718534|gb|AAW89939.1| putative N utilisation substance protein A [Neisseria gonorrhoeae FA 1090] gi|291610866|gb|EFF39965.1| N utilization substance protein A [Neisseria gonorrhoeae F62] Length = 505 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 318/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 69 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 128 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 187 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 188 DRIRALF--LRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 245 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 246 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 305 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 306 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 365 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 366 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 424 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 425 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 479 >gi|50119658|ref|YP_048825.1| transcription elongation factor NusA [Pectobacterium atrosepticum SCRI1043] gi|49610184|emb|CAG73626.1| N utilization substance protein A [Pectobacterium atrosepticum SCRI1043] Length = 509 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 205/477 (42%), Positives = 305/477 (63%), Gaps = 14/477 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+ + GEII+G VK+V N+ +++ DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFRQQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+ID+++W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDVILWDDNPAQFVINAMAPADVVSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQK 353 +DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Q Sbjct: 304 VDEDTYTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSEDRWELNVMTVEDLQAKHQA 363 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + F + +++DE A +LV EGF+ +EELA V I E+ +IEGFDEET ++ RA Sbjct: 364 EAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGFDEETVEALRERA 423 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 424 KAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 >gi|218768664|ref|YP_002343176.1| transcription elongation factor NusA [Neisseria meningitidis Z2491] gi|121052672|emb|CAM09013.1| N utilisation substance protein A [Neisseria meningitidis Z2491] Length = 505 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 69 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 128 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 187 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 188 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 245 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 246 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 305 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 306 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 365 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 366 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 424 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 425 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 479 >gi|239999349|ref|ZP_04719273.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|240113616|ref|ZP_04728106.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|240126085|ref|ZP_04738971.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] Length = 500 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 212/477 (44%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 474 >gi|212634073|ref|YP_002310598.1| transcription elongation factor NusA [Shewanella piezotolerans WP3] gi|212555557|gb|ACJ28011.1| Transcription termination factor NusA [Shewanella piezotolerans WP3] Length = 499 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 189/467 (40%), Positives = 303/467 (64%), Gaps = 5/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGGYETFRRWM 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +I+L+ A DP I++GG + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTGEPLENPFREITLEAAVYDDPEIELGGFIEDEIDSVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGSNADGVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+RT + +++LF +EVPEI + ++++ +RDPGSRAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRTKSEMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESAKVVNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 +++++VD A +L EGF +EE+A V SE+ IEGFDE+ ++ RA+ + + Sbjct: 364 IESLDVDSEFAQVLADEGFTSLEEIAYVPSSELLEIEGFDEDIVESLRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + SE+L ++ G+D + + G+ T+EDLA +DD Sbjct: 424 ATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDD 470 >gi|240949224|ref|ZP_04753568.1| transcription elongation factor NusA [Actinobacillus minor NM305] gi|240296340|gb|EER46984.1| transcription elongation factor NusA [Actinobacillus minor NM305] Length = 498 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 186/470 (39%), Positives = 299/470 (63%), Gaps = 7/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG+ FR Sbjct: 4 EILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSDLDIDVRVSVDRKTGNFQTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +ISL+ A+ DP+I +G +V D + ++FGRVA+Q+ QV+ K+REAE+ Sbjct: 64 VVEEVHNMTREISLEAAQFEDPNIQLGDIVEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181 + EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPGDR Sbjct: 124 GKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIVREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+AV Sbjct: 184 VRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++ Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIII 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE Q++ + Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELEKKNQEEDGKVINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGI 420 A+ +DE A +L+ EGF +E +A V + + +I+G ++E V E+Q RA+ + Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAITKQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L Sbjct: 424 ALAEEEALKQAHIDEKLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDEL 473 >gi|325198741|gb|ADY94197.1| transcription termination/antitermination protein nusA [Neisseria meningitidis G2136] Length = 500 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNIGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|194099046|ref|YP_002002127.1| transcription elongation factor NusA [Neisseria gonorrhoeae NCCP11945] gi|254494079|ref|ZP_05107250.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291] gi|268595172|ref|ZP_06129339.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|268599676|ref|ZP_06133843.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|268684674|ref|ZP_06151536.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] gi|193934336|gb|ACF30160.1| transcription elongation factor NusA [Neisseria gonorrhoeae NCCP11945] gi|226513119|gb|EEH62464.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291] gi|268548561|gb|EEZ43979.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|268583807|gb|EEZ48483.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|268624958|gb|EEZ57358.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] gi|317164606|gb|ADV08147.1| transcription elongation factor NusA [Neisseria gonorrhoeae TCDC-NG08107] Length = 503 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 212/477 (44%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 67 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 126 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 185 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG Sbjct: 186 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQ 243 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 244 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 304 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 363 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 364 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 422 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 423 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 477 >gi|291043424|ref|ZP_06569145.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] gi|291012660|gb|EFE04645.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] Length = 505 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 69 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 128 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 187 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG Sbjct: 188 DRIRALF--LRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQ 245 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 246 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 305 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 306 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 365 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 366 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 424 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 425 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 479 >gi|254805397|ref|YP_003083618.1| N utilization substance protein A [Neisseria meningitidis alpha14] gi|254668939|emb|CBA07185.1| N utilization substance protein A [Neisseria meningitidis alpha14] Length = 500 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNESFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|325130689|gb|EGC53429.1| transcription termination/antitermination protein nusA [Neisseria meningitidis OX99.30304] Length = 500 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALAGEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|308389761|gb|ADO32081.1| N utilization substance protein A [Neisseria meningitidis alpha710] Length = 500 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 321/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|163857446|ref|YP_001631744.1| transcription elongation factor NusA [Bordetella petrii DSM 12804] gi|163261174|emb|CAP43476.1| N utilization substance protein A [Bordetella petrii] Length = 492 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 202/469 (43%), Positives = 303/469 (64%), Gaps = 12/469 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + ++IRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDAEIRVAIDRETGSHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDALELVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISGT+KR++ G++IV+ G + + R E I +EN R GDR+++ Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDIIVETGKIEARLPRSEMIPKENFRVGDRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S++RQ+ ER Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLSRQE--TERAGLRAA 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I +++ L +++L + G+ ++ L E + T +DLA + D+L Sbjct: 421 IAQEER---LETAQDLLELEGMTPELAAKLAERQVLTRDDLAELATDEL 466 >gi|313667982|ref|YP_004048266.1| N utilisation substance protein A [Neisseria lactamica ST-640] gi|313005444|emb|CBN86879.1| N utilisation substance protein A [Neisseria lactamica 020-06] Length = 500 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R G Sbjct: 123 IRDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ R E+ G QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG Sbjct: 183 DRIRALFQ--RVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VSE++ ++ G+D+ + L E GI T +DLA SVD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSEDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELI 474 >gi|240016979|ref|ZP_04723519.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA6140] gi|240081421|ref|ZP_04725964.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|240116051|ref|ZP_04730113.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|240118338|ref|ZP_04732400.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|240123886|ref|ZP_04736842.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|240128559|ref|ZP_04741220.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] gi|260440135|ref|ZP_05793951.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] Length = 500 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 474 >gi|183600365|ref|ZP_02961858.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827] gi|188020156|gb|EDU58196.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827] Length = 502 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 206/487 (42%), Positives = 313/487 (64%), Gaps = 16/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+V T +I+L+ A+ +P + +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEDVTMPTREITLEAAQFENPELKLGEYVEDQIESVAFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 AMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++D Sbjct: 184 YDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKC 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNERT 359 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 304 TMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHASI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 364 DTFTKHLDIDEEFATALVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAALTT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I++ ++ + + +E+L ++ G+D+ + L GI T+EDLA +DDL+ Sbjct: 424 IELAQKESLGDNQPAEDLLNLDGMDNTLAYNLAIRGICTLEDLAEQGIDDLI-------- 475 Query: 480 NIEKFDG 486 +IE DG Sbjct: 476 DIEGLDG 482 >gi|325132774|gb|EGC55456.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M6190] Length = 500 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|268597521|ref|ZP_06131688.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|268601718|ref|ZP_06135885.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|268604051|ref|ZP_06138218.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|268682510|ref|ZP_06149372.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|268686952|ref|ZP_06153814.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] gi|268551309|gb|EEZ46328.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|268585849|gb|EEZ50525.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|268588182|gb|EEZ52858.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|268622794|gb|EEZ55194.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|268627236|gb|EEZ59636.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] Length = 503 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT K + D +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 67 LIVAD-EDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 126 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 185 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG Sbjct: 186 DRIRALF--LRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQ 243 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 244 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 304 VSRIVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 363 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 364 AAIR-RLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 422 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ Sbjct: 423 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELI 477 >gi|77359942|ref|YP_339517.1| transcription elongation factor NusA [Pseudoalteromonas haloplanktis TAC125] gi|76874853|emb|CAI86074.1| transcription elongation protein (N utilization substance protein A) (L factor) [Pseudoalteromonas haloplanktis TAC125] Length = 499 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 186/474 (39%), Positives = 310/474 (65%), Gaps = 6/474 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--- 64 E+L +A+AV+ EK++ ++ + + ++ A + +G D+RV I+ +TGD +R Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHGGDIDVRVAIDRKTGDYDTYRRWQ 63 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDFVEEQIDSIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER E+K K GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGDR Sbjct: 124 REAERALVVEEYKSKEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+ Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKNEAESDKLLNL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + + +D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLEIDDEFASLLINEGFSSLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVITLEDLAEQGIDELVDITE 477 >gi|261820127|ref|YP_003258233.1| transcription elongation factor NusA [Pectobacterium wasabiae WPP163] gi|261604140|gb|ACX86626.1| NusA antitermination factor [Pectobacterium wasabiae WPP163] Length = 509 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 205/477 (42%), Positives = 305/477 (63%), Gaps = 14/477 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRPGD 180 +F+++ GEII+G VK+V N+ +++ DG VI R++ + REN RPGD Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQK 353 +DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Q Sbjct: 304 VDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKHQA 363 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++ RA Sbjct: 364 EAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRERA 423 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 424 KAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 >gi|121635282|ref|YP_975527.1| transcription elongation factor NusA [Neisseria meningitidis FAM18] gi|120866988|emb|CAM10751.1| N utilisation substance protein A [Neisseria meningitidis FAM18] Length = 505 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 69 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 128 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 187 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 188 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 245 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 246 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 305 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 306 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 365 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 366 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 424 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 425 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 479 >gi|325142812|gb|EGC65183.1| transcription termination/antitermination protein nusA [Neisseria meningitidis 961-5945] gi|325201699|gb|ADY97153.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240149] gi|325208565|gb|ADZ04017.1| transcription termination/antitermination protein nusA [Neisseria meningitidis NZ-05/33] Length = 500 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|161870486|ref|YP_001599658.1| transcription elongation factor NusA [Neisseria meningitidis 053442] gi|161596039|gb|ABX73699.1| N utilisation substance protein A [Neisseria meningitidis 053442] Length = 496 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 212/476 (44%), Positives = 321/476 (67%), Gaps = 19/476 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60 Query: 68 VVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 61 IVAD-EDYTYPDVEKTIEEIQEEIPGIAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 120 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 179 Query: 181 RVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG R Sbjct: 180 RIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQR 237 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V Sbjct: 238 AKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEV 297 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDF 355 +++V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E D N +D Sbjct: 298 SRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDA 357 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ Sbjct: 358 AIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARD 416 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 417 AILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 470 >gi|311104987|ref|YP_003977840.1| transcription elongation protein NusA [Achromobacter xylosoxidans A8] gi|310759676|gb|ADP15125.1| transcription elongation protein NusA [Achromobacter xylosoxidans A8] Length = 492 Score = 363 bits (931), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 206/483 (42%), Positives = 307/483 (63%), Gaps = 15/483 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ +TGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRDTGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPGIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGESIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE S+NRQ+ ER+ Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEE-SLNRQE--VERSGLRAT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L Sbjct: 361 FMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEA 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL---LGWSENKG 478 I +++ L +++L + G+ ++ L E + T +DLA + D+L G +E + Sbjct: 421 IAQEER---LETAQDLLELEGMTPELAAKLAERQVHTRDDLAELATDELAEIAGLTEQEA 477 Query: 479 GNI 481 ++ Sbjct: 478 SDL 480 >gi|114562167|ref|YP_749680.1| transcription elongation factor NusA [Shewanella frigidimarina NCIMB 400] gi|114333460|gb|ABI70842.1| NusA antitermination factor [Shewanella frigidimarina NCIMB 400] Length = 499 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 192/482 (39%), Positives = 309/482 (64%), Gaps = 8/482 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 4 EILLVAEAVSNEKGLPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRRWM 63 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E +EN +I+ + AR +P I +G + D + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVDDQGEALENPYSEITFEAARYEEPEIQVGEFIEDQIDSVAFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +F ++ GEI++G VK+ +V+VDLGN +DGV+ +++ ISRE+ RPGDRV Sbjct: 124 EAERAQIVEQFIEREGEIVTGVVKKSTRESVVVDLGNNADGVLFKEDLISRESFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ +Y VR E RG Q+ L+R+ + +++LF +EVPEIY+ +++V +RDPG+RAK+AV Sbjct: 184 RALLYSVRPEARGAQLFLTRSKAEMLIELFRVEVPEIYDELIEVMGAARDPGARAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +++D Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + F Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVIDLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VD+ A +L EGF +EE+A V SE+ ++EGFDE ++ RA+ + + Sbjct: 364 VAYLDVDKDFAAVLADEGFTSLEEIAYVPESELLAVEGFDEGIVEALRERAKAAISTRAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENKGG 479 ++ + S++L ++ G++ + L G+ T+EDLA +DDL+ +E K G Sbjct: 424 ASEEALDGAEPSDDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIDIEELTEEKAG 483 Query: 480 NI 481 + Sbjct: 484 EL 485 >gi|289825801|ref|ZP_06544969.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 472 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 189/448 (42%), Positives = 291/448 (64%), Gaps = 9/448 (2%) Query: 43 YGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP 102 Y D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D + Sbjct: 11 YEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIE 70 Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL---- 158 + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++ Sbjct: 71 SVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEG 130 Query: 159 --GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEV 216 GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +EV Sbjct: 131 MAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEV 190 Query: 217 PEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 PEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDI Sbjct: 191 PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDI 250 Query: 277 VVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 V+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQL+G Sbjct: 251 VLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSG 310 Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 W ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E+ Sbjct: 311 WELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELL 370 Query: 397 SIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456 I+G DE T ++ RA+ L + + + + +++L ++ G+D + L G+ Sbjct: 371 EIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGV 430 Query: 457 KTMEDLAGCSVDDLL---GWSENKGGNI 481 T+EDLA +DDL G ++ K G + Sbjct: 431 CTLEDLADQGIDDLADIEGLTDEKAGEL 458 >gi|213580130|ref|ZP_03361956.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 464 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 188/443 (42%), Positives = 290/443 (65%), Gaps = 9/443 (2%) Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFG 107 D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D + + F Sbjct: 8 DVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFD 67 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNS 161 R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++ GN+ Sbjct: 68 RITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNA 127 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI Sbjct: 128 EAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 187 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W Sbjct: 188 EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDD 247 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQL+GW +++ Sbjct: 248 NPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNV 307 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E+ I+G Sbjct: 308 MTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGL 367 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 DE T ++ RA+ L + + + + +++L ++ G+D + L G+ T+ED Sbjct: 368 DEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLED 427 Query: 462 LAGCSVDDLL---GWSENKGGNI 481 LA +DDL G ++ K G + Sbjct: 428 LADQGIDDLADIEGLTDEKAGEL 450 >gi|325128688|gb|EGC51554.1| transcription termination/antitermination protein nusA [Neisseria meningitidis N1568] Length = 500 Score = 362 bits (930), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 213/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRCG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 474 >gi|316984984|gb|EFV63938.1| transcription elongation protein nusA [Neisseria meningitidis H44/76] Length = 496 Score = 362 bits (929), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 212/476 (44%), Positives = 320/476 (67%), Gaps = 19/476 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60 Query: 68 VVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 61 IVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 120 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 179 Query: 181 RVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG R Sbjct: 180 RIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQR 237 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V Sbjct: 238 AKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEV 297 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDF 355 +++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 298 SRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDA 357 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ Sbjct: 358 AIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARD 416 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 417 AILTMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 470 >gi|261400895|ref|ZP_05987020.1| transcription termination/antitermination protein NusA [Neisseria lactamica ATCC 23970] gi|269209254|gb|EEZ75709.1| transcription termination/antitermination protein NusA [Neisseria lactamica ATCC 23970] Length = 500 Score = 362 bits (929), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 210/477 (44%), Positives = 320/477 (67%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R G Sbjct: 123 IRDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ R E+ G QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG Sbjct: 183 DRIRALFQ--RVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ Sbjct: 420 DAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELI 474 >gi|309378387|emb|CBX22988.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 496 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 210/476 (44%), Positives = 318/476 (66%), Gaps = 19/476 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRWL 60 Query: 68 VVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 61 IVAD-EDYTYPDIEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD Sbjct: 120 RDAEREQNLNEFLATREDIVTGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 179 Query: 181 RVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R+++ R E+ G QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG R Sbjct: 180 RIRALFQ--RVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRAVARDPGQR 237 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP A FV++AL PA V Sbjct: 238 AKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPKPAQFVMSALSPAEV 297 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDF 355 +++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D Sbjct: 298 SRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDA 357 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ Sbjct: 358 AIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARD 416 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ Sbjct: 417 AILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELI 470 >gi|160898430|ref|YP_001564012.1| NusA antitermination factor [Delftia acidovorans SPH-1] gi|160364014|gb|ABX35627.1| NusA antitermination factor [Delftia acidovorans SPH-1] Length = 495 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 310/469 (66%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR ELL + +A++ EK+++RD+V + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NR-ELLMLVEAISREKNVERDLVFGAVESALAQATKKLYQGEVDIRVAIDRDSGNYDTFR 60 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + ++N + L A+DR P I G + + + + GR+ +AKQVI+QK Sbjct: 61 RWLVVPDDAGLQNPDAEEMLMDAQDRVPGISEGEYIEEEIESVPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ EF + I +GTVKR++ G++IV+ G +G +RR+E I +ENLR GDR Sbjct: 121 IRDAEREMLLNEFLSRGDRIFTGTVKRMDKGDIIVEAGRVEGRLRRNEMIPKENLRNGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAMIMEVDATLRGAPIILSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDSGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Q Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVARQL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L + Sbjct: 361 FMEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIEAFDEETVNELRTRAKDALLTQE 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ + + VS++L ++ G+ +I L E + T +DLA ++D+L Sbjct: 421 IAHEENVGK--VSQDLLTLEGMTPEIVDKLAEADVHTRDDLADLAIDEL 467 >gi|87119792|ref|ZP_01075689.1| transcription elongation factor NusA [Marinomonas sp. MED121] gi|86165268|gb|EAQ66536.1| transcription elongation factor NusA [Marinomonas sp. MED121] Length = 496 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 187/472 (39%), Positives = 311/472 (65%), Gaps = 5/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD + +R + Sbjct: 4 DILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEEAKIRVSIDQRTGDYTTYRQWD 63 Query: 68 VVEEVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V + E+Y ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 IVAD-EDYAQPAHELTIDDSVEQNLGLAIGEIFEEEVESEAFGRIAAQTAKQVIVQKVRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + + +KVG+ + G VK+V ++IVDLG N++ V+ +D+ I+RE R DR++ Sbjct: 123 AERAKVVARYSEKVGKPVHGQVKKVTRDSLIVDLGENAEAVLPKDQLIARETFRMNDRIR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++R + RG Q++LSR P FMV+LF +EVPEI +++++ +RDPG RAK+AV + Sbjct: 183 ALLLEIRDDSRGAQLILSRNDPAFMVELFRLEVPEIAEEMIEIRGAARDPGLRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+GACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 243 NDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQLVINAMSPAEVDSIVIDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLAS LTGW ++++T E+ +Q++ ++ F+ Sbjct: 303 DTHSMQVAVNADNLAQAIGRNGQNVRLASNLTGWQLNVMTSEDAVAKQQEESDKLINLFV 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++++D+ +A L EGFA +EE+A V + E+ I+ FDE+ E++ RA+E L + + Sbjct: 363 NSLDIDDDLAGQLADEGFATLEEIAYVPMEEMLDIDDFDEDLVNELRSRAKEALLNLALQ 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 ++++ E +E+L ++ G+D+ + + L GI TMEDLA SVDDL+ E Sbjct: 423 AEEQLEEATPAEDLLTMEGMDNHLALVLASKGICTMEDLAEQSVDDLIDIEE 474 >gi|88860547|ref|ZP_01135185.1| transcription elongation factor NusA [Pseudoalteromonas tunicata D2] gi|88817745|gb|EAR27562.1| transcription elongation factor NusA [Pseudoalteromonas tunicata D2] Length = 498 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 185/473 (39%), Positives = 308/473 (65%), Gaps = 5/473 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TG FR + Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGDIDVRVCIDRKTGAYDTFRRWQ 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VE+ +EN +I+++ A DP+ +G + + + + F R+ Q+AKQVI+QKVR Sbjct: 64 IVEDREGGLENPYREITIEAAVYDDPNAKLGDFIEEQIESIKFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER ++D+ GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGDR+ Sbjct: 124 EAERALIVEAYQDQEGEMVTGVVKKASREAIVLDLGNNAEAVIYRDDMLPRENFRPGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 184 RGLLYSVKPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV TEL E+IDIV++ + A FVINA+ PA V +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLYDDNPAQFVINAMAPAEVASIVMD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ + Q++ + + F Sbjct: 304 EDSRSMDIAVESDNLAQAIGRNGQNVRLASQLTGWELNVMTVDDMNKKNQEESGKAIKVF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A LL+ EGF+ +EE+A V SE I+G DE+T E++ RA+ L + Sbjct: 364 TEGLDIDEDFAQLLIDEGFSTLEEVAYVPTSEFLEIDGIDEDTVEELRARAKASLTTQAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 ++ + + +L ++ G++ + L G+ T+EDLA +D+L+ +E Sbjct: 424 ASEESLEGATPAADLLALEGLERHLAFVLASKGVVTLEDLAEQGIDELVDITE 476 >gi|237808991|ref|YP_002893431.1| transcription elongation factor NusA [Tolumonas auensis DSM 9187] gi|237501252|gb|ACQ93845.1| NusA antitermination factor [Tolumonas auensis DSM 9187] Length = 499 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 204/481 (42%), Positives = 310/481 (64%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK++ R+ + + ++ A + Y ++RV I+ +TGD FR + Sbjct: 4 EILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGDIEVRVTIDRKTGDFDTFRRWQ 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE ++N +ISL A+ DPSI +G V + + + F R+ Q+AKQVI+QKVRE Sbjct: 64 VVEGDGIMQNPYREISLDAAQYDDPSIQLGDYVEEQVESITFDRITTQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + +F+D+ G I++G VK+V ++I+DLG N++GV+ R++ + RE+ R GDRVK Sbjct: 124 AERAQIVEQFRDQEGTIVTGVVKKVNRDSIIMDLGSNAEGVLYREDMLPRESFRNGDRVK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V+ E RG Q+ +SRTHP F+ +LF +EVPEI I+++K +RDPGSRAK+AV + Sbjct: 184 GLLAAVKPEARGSQLFISRTHPDFLKELFRIEVPEIGEEIIEIKGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DE Sbjct: 244 NDRRIDPVGACVGMRGARVQAVSGELAGERIDIVLWDDNPAQFVINAMAPADVASLIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F Sbjct: 304 DNHTMDIAVISSNLAQAIGRNGQNVRLASQLSGWELNVMTVEDMQTKHQAEKDRILTLFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 QA+++D+ A LLV EGF+ VEE+A V +SE+ I+G D E E++ RA++ L + Sbjct: 364 QALDIDDDFAELLVEEGFSTVEEIAYVPLSELQRIDGLDNEQIEELRERAKQALSTQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++ + +++L ++ G+ + L GI T+EDLA +DDL G +E K G Sbjct: 424 KEETLAGAKPADDLLALQGMTLDLAYELAARGIPTLEDLAEQGIDDLSGIPGMTEEKAGE 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|332532410|ref|ZP_08408288.1| transcription termination protein NusA [Pseudoalteromonas haloplanktis ANT/505] gi|332038053|gb|EGI74500.1| transcription termination protein NusA [Pseudoalteromonas haloplanktis ANT/505] Length = 499 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/474 (38%), Positives = 310/474 (65%), Gaps = 6/474 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--- 64 E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVAIDRKTGDYDTFRRWQ 63 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDYVEEQIDSIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER +KD+ GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGDR Sbjct: 124 REAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+ Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRTKNEAESDKLLNL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE 477 >gi|261379110|ref|ZP_05983683.1| L Factor [Neisseria cinerea ATCC 14685] gi|269144431|gb|EEZ70849.1| L Factor [Neisseria cinerea ATCC 14685] Length = 500 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 210/477 (44%), Positives = 319/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EILQLAEALASEKNVDAEVVFQALEFALSSAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDIEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I++GTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVTGTVKRVERHGIIVEIIAGKLDALIPRDQAIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R ++ G QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEISDGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV+ AL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMGALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKD 354 V+++V+DE+ ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E D N +D Sbjct: 301 VSRIVIDEEKHAVDVIVSEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADKRNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 RT F+ +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIRT-LFVSHLNVDEETADILVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I I ++K+ E VS+++ S+ G+D+ + + L E I T +DLA SVD+L+ Sbjct: 420 DAILTIAIAAEEKLGE--VSDDMRSLEGVDADMLLKLAEADITTRDDLAELSVDELI 474 >gi|302342324|ref|YP_003806853.1| transcription termination factor NusA [Desulfarculus baarsii DSM 2075] gi|301638937|gb|ADK84259.1| transcription termination factor NusA [Desulfarculus baarsii DSM 2075] Length = 436 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 191/411 (46%), Positives = 280/411 (68%), Gaps = 4/411 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D VA EK +DR++++S + +++Q AAR G+ ++ V N E G++ +F E Sbjct: 3 ELRRMIDHVAREKGLDREILISTLEEAMQSAARRKLGSKVEVDVAYNDEIGEVEVFEFKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE+ + QI + AR DP ++G + + DFGR+A QSAKQVIIQ++++AER Sbjct: 63 VVEELTDPDTQIGFEDARRLDPDCELGDELGIKVETADFGRIAAQSAKQVIIQRMKDAER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + +FKD+ GEII+G V+R + G+++V+LG ++ ++ E + RE RPGDRV++Y+ Sbjct: 123 DIIFEDFKDRKGEIINGIVQRFDKGSIVVNLGRTEAILLAREQVPREGYRPGDRVRAYVL 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV+R RGPQ++LSRTHP F+ LF +EVPEI GIV ++ V+R+ GSR KL V SSD Sbjct: 183 DVKRVSRGPQIILSRTHPGFVEALFELEVPEIAEGIVTIEGVAREAGSRTKLGVSSSDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+GSRVQAVV ELR EKIDI+ + D A +V+NAL PA +++VV+DE Sbjct: 243 VDPVGACVGMKGSRVQAVVQELRGEKIDIIAYDSDPARYVVNALAPAEISRVVVDESNNT 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIV E LSLAIGRRGQNVRLAS+LTGW ID+ +E + S + + + + + Sbjct: 303 MEVIVADEMLSLAIGRRGQNVRLASKLTGWKIDVKSESKYS----ESLRDGYRSLLDVVG 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V +I A L G+A + LA +++A++ G D+E A + AR+Y++ Sbjct: 359 VSDIGADTLFQAGYASADALAYANAADLAALPGIDDERAQRLIDDARDYIQ 409 >gi|223042074|ref|ZP_03612250.1| transcription elongation protein NusA [Actinobacillus minor 202] gi|223017149|gb|EEF15585.1| transcription elongation protein NusA [Actinobacillus minor 202] Length = 498 Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 185/470 (39%), Positives = 297/470 (63%), Gaps = 7/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG FR Sbjct: 4 EILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSELDIDVRVVVDRKTGSFQTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL+ A+ +P I +G VV D + ++FGRVA+Q+ QV+ K+REAE+ Sbjct: 64 VVEDVHNMTREISLEAAQFENPDIQLGDVVEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181 + EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPGDR Sbjct: 124 GKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIAREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+AV Sbjct: 184 VRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ + + Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSITI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE + Q++ + Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELAKKNQEEDGKVINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGI 420 A+ +DE A +L+ EGF +E +A V + + +I+G ++E V E+Q RA+ + Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAITKQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L Sbjct: 424 ALAEEEALKQAHIDEQLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDEL 473 >gi|94676752|ref|YP_589057.1| transcription termination factor NusA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219902|gb|ABF14061.1| transcription termination factor NusA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 194/505 (38%), Positives = 312/505 (61%), Gaps = 19/505 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y ++R+ I+ ++GD R Sbjct: 4 EILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+V T +I+L+ A+ +P+ +GG + D + + F R+ Q+AKQVI+QKVR AER Sbjct: 64 IVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRAAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ G+I+ G VK+V N+ +D+GN ++ +I R++ + REN R GDR++ + Sbjct: 124 AMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y +R E RG Q+ +SRT P+ +V+LF +EVPEI ++++KAV+RDPGSRAK+AV ++D Sbjct: 184 YSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDEDTQ 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQL+GW +++IT E + + + + F + + Sbjct: 304 IMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFTKTL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 N++E +A +L+ G + +EELA V I E+ I+ DE E++ +A++ + + IT+Q+ Sbjct: 364 NINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTITMQE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 ++L + ++ I L GI T+E+LA +DDLL NIE Sbjct: 424 NNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLL--------NIE---- 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGW 511 G +Q +I+ AR K+ W Sbjct: 472 -----GLSSEQAGELIMAAR-KICW 490 >gi|71281620|ref|YP_268927.1| transcription termination factor NusA [Colwellia psychrerythraea 34H] gi|71147360|gb|AAZ27833.1| transcription termination factor NusA [Colwellia psychrerythraea 34H] Length = 497 Score = 359 bits (921), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 191/481 (39%), Positives = 303/481 (62%), Gaps = 7/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--- 64 E+L + DAV+ EK++ R+ + M +++ A + Y +RV I+ +G+ FR Sbjct: 4 EILLVVDAVSNEKALPRESIFEAMETALETATKKKYEGDIIVRVSIDRISGEFDTFRRWL 63 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++E E +EN +I L A+ P +++G D + + F RV Q+AKQVI+QK+RE Sbjct: 64 IIEDGEPMENPYAEIGLAAAQYDAPELNVGDYSEDQIESVKFDRVTTQTAKQVIVQKIRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER +++ +GEI++G VK+ +VIVDLGN ++ VI RD+ + RE RPGDRV+ Sbjct: 124 AERALVTEAYQEHLGEIVTGVVKKASRESVIVDLGNNAEAVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+++ E RG Q+ LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S Sbjct: 184 GLLYEIKPEARGAQLFLSRTKPEMLIELFRVEVPEIGEEMLEIKGAARDPGSRAKIAVKS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV++ + A +VINA+ PA V +++DE Sbjct: 244 NDKRIDPVGACVGMRGSRVQAVSGELGGERVDIVLYDDNVAQYVINAMSPAEVASIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D G +++ V + L++AIGR GQN+RLASQLTGW ++++T + Q + ++ F+ Sbjct: 304 DKGTMDIAVEEANLAMAIGRSGQNIRLASQLTGWELNVMTVADMKEKHQAENDKVLNLFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A LL EGF +EE+A V +E+ I+G DEE ++ RA+E L + Sbjct: 364 DKLDLDEDFATLLAEEGFTSLEEIAYVPTAEMLDIDGLDEEIIEALRERAKEALTTQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKGGN 480 ++ + +++L + G++ + L G++T+EDLA +D D+ E K G Sbjct: 424 SEETLEGSEPAQDLLDLDGLERHLAFVLASRGVRTLEDLAEQGIDEISDIEELDETKAGE 483 Query: 481 I 481 + Sbjct: 484 L 484 >gi|89900917|ref|YP_523388.1| NusA antitermination factor [Rhodoferax ferrireducens T118] gi|89345654|gb|ABD69857.1| NusA antitermination factor [Rhodoferax ferrireducens T118] Length = 498 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 190/469 (40%), Positives = 307/469 (65%), Gaps = 6/469 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR E+L + +A++ EK+++ DVV + ++ +A R +Y DIRV ++ ++G+ FR Sbjct: 2 NR-EMLMLVEAISREKNVELDVVFGAVEAALAQATRKIYPGDVDIRVALDRDSGNYETFR 60 Query: 65 LLEVVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + +I L A+++ P I++ + + + + GR+ +AKQVI+QK Sbjct: 61 RWHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEETVESLPIGRIGAMAAKQVILQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ +F + I GTVKR++ G++IV+ G +G +RR E I +ENLR GDR Sbjct: 121 IRDAEREMLLNDFMSRGDNIFVGTVKRMDKGDLIVESGRVEGRLRRTEMIPKENLRVGDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDVGSRAKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+ Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + Sbjct: 301 DEERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINILDAAESAQKQASETDSGRKL 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE IA LL+AEGF +E++A V + E+ IE FDE+TA E++ RA++ L ++ Sbjct: 361 FMEHLDVDEEIADLLIAEGFTSLEQVAYVPLEEMLEIESFDEDTANELRTRAKDALLTME 420 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I ++ ++ VS +L + G+ ++ L +G+ ++DLA +VD+L Sbjct: 421 IAHEESVQ--AVSLDLRDLQGLTPELIAKLATSGVNNLDDLADLAVDEL 467 >gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 442 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 184/413 (44%), Positives = 279/413 (67%), Gaps = 5/413 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLL 66 +L ++ + V+ +K ID+D++L+ + ++++ AA+ YG D I V + +TG+I +F+ Sbjct: 4 DLRRLIEQVSRDKGIDKDLLLNTVMEAVRSAAKKRYGAKQDNIEVGFSEDTGEIEVFQFK 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVV+EV + QI+L AR DP D+G + L FGR+A QSAKQVIIQ +R+AE Sbjct: 64 EVVDEVIDSDRQITLPEARQLDPECDLGDSLGIKLDAGSFGRIAAQSAKQVIIQGMRDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + ++KD+ GEII+G V+R + +IV+LG ++ ++ E + RE R GDR+++Y+ Sbjct: 124 RDIVFEDYKDRKGEIINGIVQRQDKSGIIVNLGRTEALLPITEQVPRELYRQGDRIRAYV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV+R+ +GPQ++LSR F++ LF EVPEI GIV++ AV+R+PGSR+K+AV S D+ Sbjct: 184 VDVKRQTKGPQIILSRVDENFLIMLFEAEVPEIQEGIVKIMAVAREPGSRSKIAVASRDA 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ +V ELR EKIDI+ W+PD A FV AL PA V+++++DED Sbjct: 244 DVDPVGACVGMKGSRVQNIVQELRGEKIDIIPWNPDPAKFVTQALAPAEVSRIIIDEDSQ 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +E+IVP +QL LAIG+RGQNVRLA++LTGW ID+ +E + S K E ++ Sbjct: 304 NMEIIVPDDQLFLAIGKRGQNVRLAAKLTGWKIDVKSESKYS----KSMKEGYLSLLKIP 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 V E+ A L GF +E+A ++E+ + G +E+ A +I G A+ ++ Sbjct: 360 GVGEMTASALYEAGFTSAKEVAEANLAELMQVPGINEKKATQILGAAQTLMKA 412 >gi|288940250|ref|YP_003442490.1| NusA antitermination factor [Allochromatium vinosum DSM 180] gi|288895622|gb|ADC61458.1| NusA antitermination factor [Allochromatium vinosum DSM 180] Length = 499 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 187/457 (40%), Positives = 294/457 (64%), Gaps = 8/457 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + V+ + ++ A R +G D+RV I+ +TG FR E Sbjct: 4 EILNVVEAVSNEKDVPEGVIFEAIEAALASATRKKHGGEIDVRVTIDRKTGSYRTFRRWE 63 Query: 68 VVEEVENYTC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+ QI+ A +P + IG + + + FGR+A Q+AKQVI+QKV Sbjct: 64 IVSDPESGMLEAPARQITASAAAILEPELSIGDFMEEEIESELFGRIAAQTAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 R+AER + F + G++++G VK+ E G +++DLGN ++ ++ RD I RE++RPGDR Sbjct: 124 RDAERAKIVDAFASRQGQLVTGIVKKAERGTILLDLGNNAEALVPRDHVIPRESVRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+YDVR EQ+GPQ+ +SRT P+ +++LF +EVPE+ G++++ +RDPG RAK+AV Sbjct: 184 LRGYLYDVRSEQKGPQLFVSRTAPELLIELFKLEVPEVGEGLIEILGAARDPGVRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVGMRGSRVQAV EL E++DI++W + A FVINA+ PA V +V+ Sbjct: 244 RTRDPRIDPVGACVGMRGSRVQAVSNELNGERVDIILWDENPAQFVINAMSPADVVSIVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V +E L+ AIGR GQNVRLA+QL+GW ++++ E++ + +++ Q Sbjct: 304 DEEARSMDVAVKEENLAQAIGRFGQNVRLATQLSGWELNVMNEKDAAAKSEQEARRSAQV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + +DE +A LLV EGF+ V+E+A V + E+ +I+ D+ET ++ RA + L Sbjct: 364 FMDQLGIDEGLATLLVEEGFSSVDEVAYVPLDEMRAIDELDDETIELLRERANDVLVTRA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 I ++ G+S L ++ G+D + L E GI T Sbjct: 424 IATEEVDEVGGMS--LSALEGMDEALVEVLAERGIAT 458 >gi|297180708|gb|ADI16917.1| transcription elongation factor [uncultured gamma proteobacterium HF0010_16J05] Length = 512 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 308/474 (64%), Gaps = 10/474 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V++EK + +DV+ + ++ A + YG ++ RV I+ E+G+ FR Sbjct: 4 EILLVVESVSHEKGVSKDVLFGAIESALAVATKKKYGENAEFRVAIDRESGEYETFRTWA 63 Query: 68 VVE---------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 VV+ N Q S+ A+ P +G V+ + + + FGR+A Q+AKQVI Sbjct: 64 VVDFGEIEAEEEAEVNPEAQYSVDQAQSFKPGAVLGDVIEEQVESVAFGRIAAQTAKQVI 123 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 +QKVREAER + + +V E++SGTVK++ +VIVDLGN ++G++ R+ I RE R Sbjct: 124 VQKVREAERAQVVEAYTSRVNELVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREIFR 183 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+++ + ++R + RGPQ++LSRT +V+LF +EVPEI ++Q+ +RDPGSRA Sbjct: 184 VGDRLRAMLVEIRPDNRGPQLILSRTARSMLVELFKVEVPEISEDVIQILGAARDPGSRA 243 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA V Sbjct: 244 KIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAEVA 303 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDE+ +++ V +E L+ AIGR GQNVRLAS L GW+++I+TEEE + + + ++ Sbjct: 304 SIVLDEETHAMDIAVTEENLAQAIGRGGQNVRLASDLCGWSLNIMTEEEAAEKLEAESSK 363 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 FM+A++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE E++ RA++ L Sbjct: 364 FISEFMEALSVDEDVAAVLVEEGFTTLEEIAYVPVEEVMAIEGFDEEIVNELRNRAKDAL 423 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 I ++ + + +++L + G++ ++ L + + TMEDLA +V +LL Sbjct: 424 LTRAIASEEALGDNKPADDLLEMEGMERELAFKLAAHEVITMEDLAELAVPELL 477 >gi|39996686|ref|NP_952637.1| transcription elongation factor NusA [Geobacter sulfurreducens PCA] gi|39983567|gb|AAR34960.1| N utilization substance protein A [Geobacter sulfurreducens PCA] gi|298505697|gb|ADI84420.1| transcription elongation factor NusA [Geobacter sulfurreducens KN400] Length = 385 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 173/338 (51%), Positives = 241/338 (71%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L I D + EK IDR +V+ + ++ AA + D+ NPE G++ LF + Sbjct: 5 FNLKHIIDQIVKEKGIDRHIVVEALEQAVLTAANKKFRNTRDLEAHYNPEVGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV++ +I ++ AR+ DP +++G + L F R+A Q+AKQVIIQKVREAE Sbjct: 65 TVVDEVQDSYKEIDMEEAREIDPDVEVGDSLGMKLDASGFTRIAAQTAKQVIIQKVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EFKD++GE+++G V+R E G++++DLG ++ V+ E RE R GDRVK+ I Sbjct: 125 RETIFNEFKDRIGELVTGVVRRFEKGDLVIDLGRAEAVLSHKEQAPREVYRQGDRVKTLI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 D+R +GPQ++LSRTHP + KLF EVPEI GIV++KAV R+PGSRAK+AV+S DS Sbjct: 185 TDIRMTPKGPQIVLSRTHPGVLAKLFEAEVPEIAEGIVEIKAVVREPGSRAKIAVYSHDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D+A F NAL+PA+V+KV +D++ Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDAARFACNALQPAVVSKVYIDDENR 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E Sbjct: 305 SMEIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSE 342 >gi|254361245|ref|ZP_04977388.1| N utilization substance A [Mannheimia haemolytica PHL213] gi|261492531|ref|ZP_05989084.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496806|ref|ZP_05993180.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092741|gb|EDN73784.1| N utilization substance A [Mannheimia haemolytica PHL213] gi|261307553|gb|EEY08882.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311690|gb|EEY12840.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 498 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 189/484 (39%), Positives = 304/484 (62%), Gaps = 10/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TGD FR Sbjct: 4 EILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDIDVRVVVDRKTGDFQTFRRWA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N T +ISL+ A+ DP++ +G + D + ++FGRVA+Q+ QV+ K+REAE+ Sbjct: 64 VVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSD-----GVIRRDETISRENLRPGDR 181 + EF+ +G+II TVK+V N+ ++L G S+ VI R++ I REN RPGDR Sbjct: 124 TKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSEDIKGEAVIVREDMIPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y+++ E +GPQ+ ++R P + +LF +EVPEI G++++K +RD GSRAK+AV Sbjct: 184 VRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEGVIEIKGSARDVGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+ Sbjct: 244 KTHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDENPAQFVINAMAPADVSSIVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +++ +++ V + L+ AIGR GQNVRLA+QLTGW ++++T EE + +++ + Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWALNVMTVEELTKKSEEEDGKVINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV-EIQGRAREYLEGI 420 A+ +DE A +L+ EGF +E +A V + + +I+G ++E V E+Q RA+ + Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDTLTAIDGLEDEDLVEELQSRAKNAITKK 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG---WSENK 477 + +K ++ + E+L ++ G+D I L E I T+E+LA VDDL SE K Sbjct: 424 ALEEEKLLKSAQIEEKLLTLEGMDRHIAFKLAEKQITTLEELAEQGVDDLADIEELSEEK 483 Query: 478 GGNI 481 G + Sbjct: 484 AGEL 487 >gi|78222794|ref|YP_384541.1| transcription elongation factor NusA [Geobacter metallireducens GS-15] gi|78194049|gb|ABB31816.1| NusA antitermination factor [Geobacter metallireducens GS-15] Length = 381 Score = 356 bits (914), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 174/338 (51%), Positives = 239/338 (70%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L I D + EK IDRD+V+ + ++ AA Y D+ NPE G++ LF + Sbjct: 5 FNLKHIIDQIVKEKGIDRDIVVEALEQAVLSAANKKYRNTRDLEAHYNPEVGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +I L+ AR+ DP +++G + + F R+A Q+AKQVIIQKVREAE Sbjct: 65 TVVDEVMDSYKEIDLEEAREIDPDVEVGDSLGMKMDASGFTRIAAQTAKQVIIQKVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EFKD++GE+I+G V+R E G+++VDLG ++ ++ E RE R GDR+K+ I Sbjct: 125 RETIFNEFKDRIGELINGVVRRFEKGDLVVDLGRAEALLSNKEQAPREVYRQGDRIKALI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 D+R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PGSR+K+AV+S DS Sbjct: 185 MDIRMTPKGPQIILSRTHPGVLAKLFEAEVPEIAEGIVEIKSVVREPGSRSKIAVYSHDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL+PA V+KV +DE+ Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDPARFACNALQPAAVSKVYIDEENK 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E Sbjct: 305 ALEIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSE 342 >gi|261379745|ref|ZP_05984318.1| L factor [Neisseria subflava NJ9703] gi|284797423|gb|EFC52770.1| L factor [Neisseria subflava NJ9703] Length = 501 Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 209/477 (43%), Positives = 316/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R G Sbjct: 123 IRDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R ++ G QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG Sbjct: 183 DRIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP++A FV+NAL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPETAQFVMNALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R F +N+D+ A +LV EGFA +EE+A V +E+ +I+GFDEE ++ RAR Sbjct: 361 AVIRN-LFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIDGFDEEIVETLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ Sbjct: 420 DAILTITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELV 474 >gi|59711092|ref|YP_203868.1| transcription elongation factor NusA [Vibrio fischeri ES114] gi|59479193|gb|AAW84980.1| transcription termination/antitermination L factor NusA [Vibrio fischeri ES114] Length = 495 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 302/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE VEN T +IS++ A+ D +I+IGG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F D GE+I+G VK+V +IVDLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDEDNN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ + Sbjct: 304 TMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + + ++ Sbjct: 364 DIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +E+L ++ G++ ++ L G+ T+EDLA VD+L Sbjct: 424 SLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDEL 467 >gi|241760381|ref|ZP_04758476.1| transcription elongation factor NusA [Neisseria flavescens SK114] gi|241319259|gb|EER55737.1| transcription elongation factor NusA [Neisseria flavescens SK114] Length = 501 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 210/477 (44%), Positives = 315/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPEVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R G Sbjct: 123 IRDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R ++ G QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG Sbjct: 183 DRIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR Sbjct: 361 AVIRN-LFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ Sbjct: 420 DAILTITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELV 474 >gi|148263956|ref|YP_001230662.1| transcription elongation factor NusA [Geobacter uraniireducens Rf4] gi|146397456|gb|ABQ26089.1| NusA antitermination factor [Geobacter uraniireducens Rf4] Length = 383 Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 175/338 (51%), Positives = 237/338 (70%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF + Sbjct: 5 FNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREAE Sbjct: 65 TVVEEVQDSYKEIDLDEAREIDPDVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+ I Sbjct: 125 RETIFNEFQERHGEVINGVVRRFEKGDLVVDLGRAEALLPHKEQAPREVYRQGDRVKALI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++R +GPQ+LLSRTHP + KLF EVPEI GIV++K+V R+PGSRAK+AV+S DS Sbjct: 185 TEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEIKSVVREPGSRAKIAVYSHDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDNR 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E Sbjct: 305 SMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSE 342 >gi|225075066|ref|ZP_03718265.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens NRL30031/H210] gi|224953550|gb|EEG34759.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens NRL30031/H210] Length = 501 Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 210/477 (44%), Positives = 315/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R G Sbjct: 123 IRDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R ++ G QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG Sbjct: 183 DRIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 V+++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE D N +D Sbjct: 301 VSRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR Sbjct: 361 AVIRN-LFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ Sbjct: 420 DAILTITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELV 474 >gi|197335920|ref|YP_002155240.1| transcription termination factor NusA [Vibrio fischeri MJ11] gi|197317410|gb|ACH66857.1| transcription termination factor NusA [Vibrio fischeri MJ11] Length = 495 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 193/464 (41%), Positives = 302/464 (65%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE VEN T +IS++ A+ D +I++GG + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVENVENPTLEISIEAAQFEDETIEVGGYIEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F D GE+I+G VK+V +IVDLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDEDNN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ + Sbjct: 304 TMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + + ++ Sbjct: 364 DIDADFAQLLVEEGFTTLEEIAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + + +E+L ++ G++ ++ L G+ T+EDLA VD+L Sbjct: 424 SLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDEL 467 >gi|307546728|ref|YP_003899207.1| transcription elongation factor NusA [Halomonas elongata DSM 2581] gi|307218752|emb|CBV44022.1| transcription elongation factor NusA [Halomonas elongata DSM 2581] Length = 497 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 208/513 (40%), Positives = 320/513 (62%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA++ EK + R+V+ + ++ A+R + + +RV I+ TGD FR Sbjct: 4 EILAVVDAISNEKGVPREVIFEAVEAALASASRKRFEDEEASVRVHIDRNTGDYETFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 EVVE+ + QI L A RDP + +G VV + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 EVVEDDDFDGPDAQIKLSFAERRDPPLGLGDVVEERIENAVFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++ GE+++G VK+ +I+DLG N++ + R E I E R +RV+ Sbjct: 124 AERAEVVSLYAEREGELVAGIVKKTTRDGLIIDLGDNAEAFLPRSEMIPGERYRMNERVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V E RG Q++LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV + Sbjct: 184 ALLTKVDPEARGAQLILSRTCPELIIELFKIEVPEIAEQLIEIKGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV TEL++E++DIV+W + A VINA+ PA V +++DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSTELQNERVDIVLWDDNPAQLVINAMAPADVASILVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLAS+LTGW ++++TE E R ++ + + F+ Sbjct: 304 DAHAMDVAVGEDNLAQAIGRSGQNVRLASELTGWRLNVMTEAEAETKRDQEIDSLVEHFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q ++VD+ +A LLV EGF +EE+A V + E+ IE DEE E++ RA++ L + I Sbjct: 364 QHLDVDDDVARLLVEEGFTSLEEVAYVPVEEMLEIEELDEELIEELRARAKDELLNLAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ +++L ++ G++ + L GI TMEDLA SVDDL +IE+ Sbjct: 424 SEEELDGAQPADDLLAMDGMERHLAFILASRGIVTMEDLAEQSVDDLT--------DIEE 475 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 D ++ S+I+ AR W E E+ Sbjct: 476 LD---------DERAASLIMTARAP--WFESEQ 497 >gi|152995057|ref|YP_001339892.1| NusA antitermination factor [Marinomonas sp. MWYL1] gi|150835981|gb|ABR69957.1| NusA antitermination factor [Marinomonas sp. MWYL1] Length = 496 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 182/481 (37%), Positives = 314/481 (65%), Gaps = 8/481 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD +R Sbjct: 4 EILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEDALIRVSIDQRTGDYKTYRQWH 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V + E+Y+ ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 IVAD-EDYSAPAFELTIDDSEEQNLGVPIGEIYEEEVESEVFGRIAAQTAKQVIVQKVRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + + +KVG+++ G VK+V ++I+DLG N++ + +D+ I+RE+ R DR++ Sbjct: 123 AERAKMVALYTEKVGKLVHGQVKKVTRDSLIIDLGENAEASLPKDQLIARESFRMNDRIR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++R + RG Q++LSR P FM++LF +EVPEI +++++ +RDPG RAK+AV + Sbjct: 183 ALLLEIRDDSRGAQLILSRNAPAFMIELFRLEVPEISEEVIEIRGAARDPGLRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+DE Sbjct: 243 NDRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVIDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLAS LTGW+++++T E+ +Q++ + F+ Sbjct: 303 DAHSMDVAVKSDNLAQAIGRNGQNVRLASTLTGWSLNVMTSEDAEAKQQEESQKLIDIFV 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++D+ +A +V EGF +EE+A + + E+ I+GFDE+ E++ RA+E L + Sbjct: 363 NGLDIDDDLAIQMVDEGFTSLEEVAYIPMEEMLDIDGFDEDLVNELRSRAKEALLNQALQ 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++++ + + +L ++ G+D+ + + L G+ TMEDLA SVD+LL G +E + G Sbjct: 423 AEEQLDDAKPAADLLAMEGMDNHLALVLASMGVITMEDLAEQSVDELLSVEGMTEERAGR 482 Query: 481 I 481 + Sbjct: 483 L 483 >gi|308272453|emb|CBX29057.1| Transcription elongation protein nusA [uncultured Desulfobacterium sp.] Length = 432 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 181/411 (44%), Positives = 275/411 (66%), Gaps = 5/411 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ ++ D V+ ++ ID++V++ + ++++ AAR YG DI ++ N E+GDI F+ + Sbjct: 5 EIKRVVDQVSRDRGIDKNVLIKAIEEALKSAARKKYGNKIDIEIQYNEESGDIEAFQFKK 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + QISL+ + DP +IG + + FGR+A QSAKQVIIQK+++AER Sbjct: 65 VVETVTDSMTQISLEEGQTLDPECEIGDSLGTKMDTTAFGRIAAQSAKQVIIQKMKDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y F ++ GEII+G V+R+E+ G++IV+LG ++G++ +E IS+E + GDR+++ + Sbjct: 125 NAVYSSFIERKGEIINGIVQRIEHSGDIIVNLGQTEGILPINEQISKETYKRGDRIRALL 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V ++ RGPQ++LSRTH F+ LF EVPEI GIV++ R+PG RAK+AV S+DS Sbjct: 185 LEVLQDSRGPQIVLSRTHSNFLANLFKTEVPEISEGIVKIMGAVREPGVRAKIAVSSNDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 I PVGACVGM+GSRVQ VV ELR EKIDI+ W DSA +V NAL PA + +V++DED Sbjct: 245 DIHPVGACVGMKGSRVQNVVQELRGEKIDIIPWHVDSAKYVCNALAPAEIIRVIIDEDNH 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EVIVP E LS+AIG+RGQNVRLAS+LTGW +D+ +E + + ++ I Sbjct: 305 AMEVIVPDESLSIAIGKRGQNVRLASKLTGWNLDVQSESHYNEVLKNGYDSLVSLPGVGI 364 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 N + + L+ +GF V+E++ S++ I+G +E A ++ A E + Sbjct: 365 N----LVNSLIEKGFTSVDEISNASASDLMQIKGIAKEKAEKLINSATEAI 411 >gi|222055779|ref|YP_002538141.1| NusA antitermination factor [Geobacter sp. FRC-32] gi|221565068|gb|ACM21040.1| NusA antitermination factor [Geobacter sp. FRC-32] Length = 380 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 175/338 (51%), Positives = 236/338 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF + Sbjct: 5 FNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREAE Sbjct: 65 TVVDEVQDSYKEIDLDEAREIDPEVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+ I Sbjct: 125 RETIFNEFQERQGEVINGVVRRFEKGDLVVDLGRAEALLSHKEQAPREVYRQGDRVKALI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++R +GPQ+LLSRTHP + KLF EVPEI GIV+VK V R+PGSRAK+AV+S DS Sbjct: 185 TEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEVKNVVREPGSRAKIAVYSHDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDNR 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E Sbjct: 305 AMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSE 342 >gi|319637701|ref|ZP_07992467.1| N utilization substance protein A [Neisseria mucosa C102] gi|317400856|gb|EFV81511.1| N utilization substance protein A [Neisseria mucosa C102] Length = 497 Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 208/476 (43%), Positives = 314/476 (65%), Gaps = 19/476 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 1 MLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRWL 60 Query: 68 VVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 61 IVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 120 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 179 Query: 181 RVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R+++ +R ++ G QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG R Sbjct: 180 RIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQR 237 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V Sbjct: 238 AKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEV 297 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKDF 355 +++V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE D N +D Sbjct: 298 SRIVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDA 357 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ Sbjct: 358 VIRN-LFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARD 416 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ Sbjct: 417 AILTMTIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELV 470 >gi|261364309|ref|ZP_05977192.1| transcription termination/antitermination protein NusA [Neisseria mucosa ATCC 25996] gi|288567563|gb|EFC89123.1| transcription termination/antitermination protein NusA [Neisseria mucosa ATCC 25996] Length = 500 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 205/477 (42%), Positives = 316/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P DI G + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R ++ G QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG Sbjct: 183 DRIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE D +D Sbjct: 301 VSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-DLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ Sbjct: 420 DAILTMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELI 474 >gi|58584795|ref|YP_198368.1| transcription elongation factor NusA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419111|gb|AAW71126.1| Transcription elongation factor, NusA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 520 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 200/516 (38%), Positives = 324/516 (62%), Gaps = 27/516 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D +V++ + +I+ A YG+ S + V I+ TG++ +R L Sbjct: 22 LDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYREL 81 Query: 67 EVVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VV+ E N I+L A+ +G +++ L ++ + + A+Q I Q Sbjct: 82 KVVDDEPNGEEHNGYGSITLTQAKLIKEDAKVGDTINELLS-LNTDLASARIAQQRIAQV 140 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + I E R GD+ Sbjct: 141 IKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLIGGELFREGDK 200 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+YI V+R G Q++LSR F+ L E+PEI +G+V VK ++RD GSR+K+AV Sbjct: 201 IKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRSKVAV 260 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D +IDPVGACVG++G R++A++ EL EKID+V + D FVI A+ PA V+KV++ Sbjct: 261 FSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVSKVII 320 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE +E+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R ++ ++ + Sbjct: 321 DESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQCSAL 380 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E++ RA YL+ + Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYLKAEN 440 Query: 422 ITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++++ LG+ ++ ++P ID KI AL E+GIKT+E++A DL + Sbjct: 441 DRKIEELKSLGMESDVINLPLSIDDKI--ALSEHGIKTLENIA-----DLSSY------- 486 Query: 481 IEKFDGFLSSLGTPKDQ----VESMIIHARYKMGWI 512 +F LSS + K+ V S+I+ AR K+G I Sbjct: 487 --EFCSILSSSASDKENLKNTVNSIIMEARKKLGVI 520 >gi|219682291|ref|YP_002468675.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622024|gb|ACL30180.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086115|gb|ADP66197.1| transcription elongation factor NusA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086688|gb|ADP66769.1| transcription elongation factor NusA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 496 Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 186/465 (40%), Positives = 297/465 (63%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRRWM 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREAER Sbjct: 64 VVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ G+II+G VK++ N+++DLGN ++ +I R+ + REN RPGDR++ + Sbjct: 124 AMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDEDCH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF + + Sbjct: 304 TMDIAVDVNNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKKNL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++ K Sbjct: 364 NINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDKNK 423 Query: 427 K-IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I+E +EL I G+++ + + L E I T+E+LA +DDL Sbjct: 424 MIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDL 468 >gi|298369368|ref|ZP_06980686.1| transcription termination/antitermination protein NusA [Neisseria sp. oral taxon 014 str. F0314] gi|298283371|gb|EFI24858.1| transcription termination/antitermination protein NusA [Neisseria sp. oral taxon 014 str. F0314] Length = 500 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 206/477 (43%), Positives = 319/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDTEVVFQALEFALSTAAKKKANREHMDVRVEIDRDTGEYRTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P I IG + L FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTEIQIGEYYEEQLENEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF + +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQILNEFLARKEDIVSGTVKRVERHGIIVEVVSGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRGP----QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ + +R ++ G QV+LSRT F+ KL+ MEVPEI +G ++++AV+RDPG Sbjct: 183 DRIRALL--LRVDEIGSTGRKQVILSRTDKNFLAKLYAMEVPEIEDGSLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP++A FVINAL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPETAQFVINALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 VT++V+DED ++V+V ++QL+LAIGR GQNVRLAS LT W ++I+T E D N +D Sbjct: 301 VTRIVIDEDKHAVDVVVAEDQLALAIGRGGQNVRLASDLTEWQLNIMTVAEADERNEAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R + F + +N+DE A +L+ EGFA +EE+A V +E+ I+GFDEE ++ RAR Sbjct: 361 EAIR-KLFTEHLNIDEETADILLQEGFATLEEVAYVPAAELLEIDGFDEEIVEVLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ + V+++L S+ G+D+++ L + GI T +DLA +VD+L+ Sbjct: 420 DAILTLAIASEEKLED--VADDLRSLEGLDTEMLRDLAQAGIITRDDLAELAVDELI 474 >gi|15616983|ref|NP_240196.1| transcription elongation factor NusA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681736|ref|YP_002468122.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471436|ref|ZP_05635435.1| transcription elongation factor NusA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386974|sp|P57459|NUSA_BUCAI RecName: Full=Transcription elongation protein nusA gi|25299780|pir||B84974 N utilization substance protein A [imported] - Buchnera sp. (strain APS) gi|10039048|dbj|BAB13082.1| N utilization substance protein A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624579|gb|ACL30734.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087273|gb|ADP67353.1| transcription elongation factor NusA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 496 Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 186/465 (40%), Positives = 297/465 (63%), Gaps = 2/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRRWM 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREAER Sbjct: 64 VVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ G+II+G VK++ N+++DLGN ++ +I R+ + REN RPGDR++ + Sbjct: 124 AMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDEDCH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF + + Sbjct: 304 TMDIAVDINNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKKNL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++ K Sbjct: 364 NINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDKNK 423 Query: 427 K-IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 I+E +EL I G+++ + + L E I T+E+LA +DDL Sbjct: 424 MIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDL 468 >gi|92115190|ref|YP_575118.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043] gi|91798280|gb|ABE60419.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043] Length = 497 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 297/464 (64%), Gaps = 4/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA++ EK + R+V+ + ++ A+R + G RV+I+ TGD FR Sbjct: 4 EILLVVDAISNEKGVPREVIFEAVESALASASRKRFDGQEVSTRVKIDRATGDYDTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ EN +I L A RDP + +G VV + + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 TVVEDEAFENPDSEIPLSEAERRDPPLALGDVVEEQVESVAFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER ++ ++ GE+++G VK+ +IVDLG N++ + R E I E R +RV+ Sbjct: 124 AERAEVVRQYAEREGELVAGIVKKTTREGLIVDLGENAEAFLPRSEMIPGERYRMNERVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + ++ V E RG Q++L+RT P +V+LF +EVPEI ++++K +RDPG+RAK+AV + Sbjct: 184 ALLWKVDAEARGSQLILTRTRPDMIVELFKIEVPEIAEQLIEIKGAARDPGARAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV ELR+E++DI++W + A VINA+ PA V +++DE Sbjct: 244 NDKRIDPVGACVGMRGSRVQAVSNELRNERVDIIMWDDNPAQLVINAMAPAEVGSILVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLAS+LTGWT++++TEEE R+++ + ++F+ Sbjct: 304 DAHSMDVAVAEDNLAQAIGRSGQNVRLASELTGWTLNVMTEEEAEGKREQEIDSLIEYFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + VDE +A LLV EGF +EELA V + E+ IE DE ++ RA++ L + I Sbjct: 364 NHLEVDEELARLLVEEGFTSLEELAYVPLEELLEIEELDEALIETLRARAKDELLTLAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 ++ + ++L + G+D + L GI T EDLA S+ Sbjct: 424 SEEALDGAQPDDDLLEMEGMDRHLAFTLASRGIVTREDLAEQSI 467 >gi|21672641|ref|NP_660708.1| transcription elongation factor NusA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090841|sp|Q8K9H0|NUSA_BUCAP RecName: Full=Transcription elongation protein nusA gi|21623276|gb|AAM67919.1| N utilization substance protein A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 495 Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 182/465 (39%), Positives = 295/465 (63%), Gaps = 1/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV IN +TG+ S FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVSINRKTGNFSTFRRWM 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + T +I+L+ A + I V D + ++F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDIVVHPTKEITLEAACFEGEQVKINDYVEDKIESVNFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ +G+II+G VK++ N+ +DLGN ++ +I R+ + REN RPGDR++ + Sbjct: 124 AMLVDQFRKHIGQIITGIVKKISRDNLTLDLGNNAEALILREGMLPRENFRPGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ LSR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YGVYPEARGAQLFLSRSKTEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDP+GACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +++DED Sbjct: 244 RIDPIGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVVSIIVDEDHH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ F + + Sbjct: 304 TMDIAVDSSNLAQAIGRNGQNVRLASQISGWELNVMTTEDLRSKHKEEAYAAFNIFKKNL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 NV E + LV EGF+ +EELA + ++E+ I E ++ A+ L +++ + Sbjct: 364 NVSEKVIKTLVKEGFSSLEELAYIPLNELLEINNLTEREVQLVREGAKNGLLLLELDQKN 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +I+ + + L ++ G++ + + L E I T+E+LA +DDL+ Sbjct: 424 QIKNKKIEQALLNVNGMNELLALKLAEKNIFTVEELANQGIDDLI 468 >gi|94272101|ref|ZP_01292067.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] gi|93450237|gb|EAT01518.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] Length = 476 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 184/397 (46%), Positives = 266/397 (67%), Gaps = 7/397 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+ Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EVE+ QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVEDEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++ Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT-QFFMQA 365 + V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E +R F E Q ++ Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSE-----SRYARFIEDGFQSLLEL 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 + E A LL G+ V ELA E+ I+GFD Sbjct: 359 AGMTEKRAELLAENGYGSVTELAAASAEELQEIDGFD 395 >gi|197117688|ref|YP_002138115.1| transcription elongation factor NusA [Geobacter bemidjiensis Bem] gi|197087048|gb|ACH38319.1| transcription termination factor NusA [Geobacter bemidjiensis Bem] Length = 383 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 173/338 (51%), Positives = 234/338 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + Sbjct: 5 FNLKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAE Sbjct: 65 TVVEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I Sbjct: 125 RETIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS Sbjct: 185 TEIRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEY 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E Sbjct: 305 AMEVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSE 342 >gi|71891890|ref|YP_277620.1| transcription elongation factor NusA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795996|gb|AAZ40747.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 505 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 191/472 (40%), Positives = 302/472 (63%), Gaps = 9/472 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ ++ + + ++ A + Y ++RV I+ ++G I+ FR Sbjct: 4 EILAVIEAVSNEKAVPQEKIFEALETALAAATKKKYEQDVEVRVVIDRKSGQINTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V T +I+L AR +P + I V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEQVTQPTKEITLDAARFENPKVQICDYVEDVIESISFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F ++ G+I++G VK++ ++ +DLGN ++G+I R+E + REN R GDR++ + Sbjct: 124 AIIIEQFLNRQGDIVTGIVKKINRDSISIDLGNNAEGMINREEMLPRENFRLGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y VR + +GPQ+L+SRT + +++LF +EVPEI ++ +KA +RDPGSRAK+AV ++D Sbjct: 184 YLVRPDFKGPQLLISRTRTEMLIELFRIEVPEIGEELITIKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E++D+++W + FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERVDVILWDDNPVQFVINAMSPADVASIVIDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L AIGR GQN+RL SQL+GW ++I+T +E RQ + T F+ ++ Sbjct: 304 TMDISVEETNLPQAIGRNGQNIRLVSQLSGWELNIMTVDELEKKRQVEICTITNIFIHSL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID-ITLQ 425 N+ E A +L+ GF+ +EELA V ++E+ SI+ FD +T I+ RA+ L+ I + Sbjct: 364 NISEQFAKILIDSGFSSLEELAYVPMTELLSIKEFDRKTVEIIRDRAKSALKNFSVIHNE 423 Query: 426 KKIRELGVSEE-------LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 K I+E + L +P I+ K+ + L E GI T+E+LA + DL Sbjct: 424 KNIKEDNYTAAVIHPVTGLLRLPNIEYKLALTLVERGISTLEELAEQDISDL 475 >gi|253701581|ref|YP_003022770.1| transcription elongation factor NusA [Geobacter sp. M21] gi|251776431|gb|ACT19012.1| NusA antitermination factor [Geobacter sp. M21] Length = 382 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 173/338 (51%), Positives = 234/338 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + Sbjct: 5 FNLKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAE Sbjct: 65 TVVEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I Sbjct: 125 RETIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS Sbjct: 185 TEIRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEY 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E Sbjct: 305 AMEVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSE 342 >gi|323144579|ref|ZP_08079168.1| transcription termination factor NusA [Succinatimonas hippei YIT 12066] gi|322415655|gb|EFY06400.1| transcription termination factor NusA [Succinatimonas hippei YIT 12066] Length = 493 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 196/481 (40%), Positives = 304/481 (63%), Gaps = 12/481 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ IA+A++ E++I RD + + ++ A + Y +RV I+ + G +R Sbjct: 4 EIIAIAEALSNERAIPRDKIFEALETALATATKKKYPVDIAVRVAIDRKDGSYRTYRRWN 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V++ +EN ++SL A++ I G VV + +P + F R+ +Q+AKQV+ QKV++ Sbjct: 64 VIDTDGPLENPASEVSLAAAKEDHQGIQAGDVVEEEIPSVKFDRITIQTAKQVLSQKVKD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER++ E ++ +G +++ TVK+ +I+DLGN ++ V+RRD+ I E GDR+K Sbjct: 124 AEREQIIAEQREHLGHVVNATVKKQGRDFLILDLGNNAEAVLRRDQIIPHETFGRGDRIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + ++R + +GPQ++ SRT +F+ +LF +EVPEI I+++ +V+RDPGSRAK++V S Sbjct: 184 VLLSEIRADGKGPQIICSRTANEFLSELFRIEVPEIGEDIIEIMSVARDPGSRAKISVRS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP GAC+GMRG+RV AV EL EKID+V+W + A +V NA+ PA V+K++++E Sbjct: 244 KDRRIDPRGACIGMRGARVMAVSNELAGEKIDVVLWDENLAQYVNNAMEPAEVSKIIINE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I+V V E L+LAIGR GQNVRLASQ+ GW + ++TE E + + + + F+ Sbjct: 304 DSHTIDVAVADENLALAIGRNGQNVRLASQILGWNLKVMTESEMEEGLKAEEGKVIKTFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 A+N+D+ A L + GF +EE+A V I E SIEG D ETA+ +Q AR+ L Sbjct: 364 DALNIDDEFAEALSSVGFTTLEEIAYVPIEEFESIEGIDRETAIILQENARKAL----AE 419 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGN 480 ++K++E G SE L + GIDS + + L GIK E+LA +VDDLL G +E K G Sbjct: 420 REEKLKESG-SESLTKLEGIDSDLAMKLVAVGIKDPEELAEQAVDDLLDIEGMTEEKAGQ 478 Query: 481 I 481 I Sbjct: 479 I 479 >gi|158523046|ref|YP_001530916.1| transcription elongation factor NusA [Desulfococcus oleovorans Hxd3] gi|158511872|gb|ABW68839.1| NusA antitermination factor [Desulfococcus oleovorans Hxd3] Length = 475 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 180/396 (45%), Positives = 259/396 (65%), Gaps = 4/396 (1%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ + V+ +K IDRD ++ + ++I+ AAR YG DI + +TG+I +F+ EVVE Sbjct: 8 RVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFKEVVE 67 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 V++ QI+ R DP ++G + + FGR+A QSAKQVIIQK+REAER Sbjct: 68 TVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAERSAV 127 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 Y F +K GEII+G V R+E GNVIV++G ++ ++ E I E R GDRV++ + V Sbjct: 128 YKNFVEKEGEIINGIVSRMERGNVIVNIGEAEAILNSREQIPGEGYRRGDRVRANVMKVL 187 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 E GPQ++LSR HP F+V LF EVPEI GI+ +KA++R+ G R K+AV S+D IDP Sbjct: 188 EETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSNDMDIDP 247 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VGACVG+RG+R+Q VV EL+ EKIDIV W+PD A FV NAL PA + +V++DED +E+ Sbjct: 248 VGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDNAAMEI 307 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 IVP E SLAIGRRGQNVRLAS+LTGW +D+ +E + ++ ++ +Q VD Sbjct: 308 IVPDESHSLAIGRRGQNVRLASKLTGWHLDVQSESIYTQAMERGYD----TLLQIPGVDG 363 Query: 371 IIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +A+ L GF ++++ + ++ +EG DE +A Sbjct: 364 SLANALCEVGFFSADDISGAAVDDLIELEGIDEASA 399 Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 31/230 (13%) Query: 258 RGSRVQAVVTELRDEKIDI-VVWSPDSATFVINALRPA--------IVTKVVLDEDVGRI 308 RG RV+A V ++ +E ++ S FV+N + I K + E GR Sbjct: 175 RGDRVRANVMKVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRT 234 Query: 309 EVIVPKEQLSL-----AIGRRGQNVR-LASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ V + + +G RG ++ + +L G IDI+ D +F Sbjct: 235 KIAVVSNDMDIDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDP----------AKFV 284 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGID 421 A++ EI A +++ E A +E + + +A G + A ++ G +L+ Sbjct: 285 CNALSPAEI-ARVIIDEDNAAMEIIVPDESHSLAIGRRGQNVRLASKLTGW---HLDVQS 340 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ + E G + L IPG+D + AL E G + +D++G +VDDL+ Sbjct: 341 ESIYTQAMERGY-DTLLQIPGVDGSLANALCEVGFFSADDISGAAVDDLI 389 >gi|255066627|ref|ZP_05318482.1| transcription termination/antitermination protein NusA [Neisseria sicca ATCC 29256] gi|255049211|gb|EET44675.1| transcription termination/antitermination protein NusA [Neisseria sicca ATCC 29256] Length = 500 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 203/477 (42%), Positives = 316/477 (66%), Gaps = 19/477 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ +R Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTYRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P DI G + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R ++ G QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG Sbjct: 183 DRIRALF--LRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAE 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 V+++V+D+D ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE D +D Sbjct: 301 VSRIVIDDDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAED 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR Sbjct: 361 AAIR-DLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELFAIEGFDEEIVETLRNRAR 419 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + + + I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ Sbjct: 420 DAILTMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELI 474 >gi|94263057|ref|ZP_01286876.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] gi|93456600|gb|EAT06708.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] Length = 472 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 183/397 (46%), Positives = 265/397 (66%), Gaps = 7/397 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+ Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EV + QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVADEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++ Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT-QFFMQA 365 + V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E +R F E Q ++ Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSE-----SRYARFIEDGFQSLLEL 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 + E A LL G+ V ELA E+ I+GFD Sbjct: 359 AGMTEKRAELLAENGYGSVTELAAASAEELQEIDGFD 395 >gi|78358201|ref|YP_389650.1| transcription elongation factor NusA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220606|gb|ABB39955.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 429 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 178/395 (45%), Positives = 267/395 (67%), Gaps = 5/395 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL + D ++ ++ +DR +++ + ++++ + YG D+ V N ETG+I +++ Sbjct: 3 MELKKAIDQISKDRGLDRALLIETLEEAVRTSVIRKYGDELDLEVNFNEETGEIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EEVE+ QISL+ AR DPS+ + + L D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVTEEVEDEASQISLEDARAHDPSVQLDDEMGFRLKIEDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y EFKD++ E+ SG ++R + I++LG ++ ++ +DE I RE+ + GDRV++ I Sbjct: 123 QEIIYEEFKDRLNEVASGIIQRRDKTGWIINLGRTEALLPKDEQIPREHYKRGDRVQAII 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+E RGPQV++SR+HP +M LF EVPE+ + VQV V+RDPGSRAK+AV S D Sbjct: 183 IEVRKEGRGPQVVVSRSHPDYMAALFKREVPEVDDETVQVMGVARDPGSRAKVAVTSRDR 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+++++++DE+ Sbjct: 243 DVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSPDIATYARNALSPAVISRIIVDEEEN 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QL+ AIGR+GQNV+LAS+L GW IDI TE R + N + Q Sbjct: 303 MLEVVVPDDQLTNAIGRKGQNVKLASKLLGWKIDIYTE-----TRYNEANAIGRGLEQLA 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +V E+ VA GF+ +EEL E+ ++EG Sbjct: 358 SVAEVPIEQFVAAGFSSIEELRDATDEELMAVEGL 392 >gi|32490976|ref|NP_871230.1| transcription elongation factor NusA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166182|dbj|BAC24373.1| nusA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 494 Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 185/466 (39%), Positives = 305/466 (65%), Gaps = 6/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + + D+R+ I+ ++G FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALEKALAAATKKKHEKDIDVRISIDRKSGSFGTFRRWM 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EV T +I+L+ A+ +P + + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVDEVTQPTKEITLEAAKIENPEAKLKEYIEDKIKSVLFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 +FK++ GEII+G VK++ V +DLG +++ VI +++ + +E RPGDRV+ + Sbjct: 124 SMIVNKFKERKGEIITGIVKKLNRDGVSLDLGSHAEAVINKEDMLPKEYFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y + E +G Q+ +SR+ + +++LF +EVPEI ++ +KA +RDPG R+K+AV ++D Sbjct: 184 YYINPESKGAQLFISRSKKEMLIELFRIEVPEIGEEVINIKATARDPGLRSKIAVQTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA VT +V+DED Sbjct: 244 RIDPIGACVGMRGARVQAVSRELGGERIDIVLWDENPAQFVINAMSPADVTSIVIDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT-QFFMQA 365 +++ V E L+ AIG+ GQN+RLASQL+GW ++++T E+D N+ K E + F++ Sbjct: 304 TMDIAVNSENLAQAIGKNGQNIRLASQLSGWELNVMT-EKDLKNKNKAEEENSMNLFLEH 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +N+++ +A LV EGF+ +E++A + I+E+ SI+ +E+TA ++ +A+ L I L Sbjct: 363 LNINQELAKNLVKEGFSKIEDIAYIPINELLSIDILNEKTAKLLKEQAQYAL--TKIALM 420 Query: 426 KKIREL-GVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 K+ +EL + E+L + G++S I E GI T+EDLA +DD+ Sbjct: 421 KEEKELTSLDEKLIKLSGVNSNIAYKFAEKGIFTLEDLAEQGIDDI 466 >gi|119713529|gb|ABL97582.1| transcription elongation factor NusA [uncultured marine bacterium EB0_35D03] Length = 491 Score = 346 bits (887), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 191/512 (37%), Positives = 311/512 (60%), Gaps = 31/512 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + +A++ EK+I +D V+ + +++ A + D+RVE++ +G+ + FR + Sbjct: 5 ELFLMIEAISNEKNITKDDVIESLEEALAVATKKRNNI--DVRVEVDRHSGEFNTFRRWQ 62 Query: 68 VVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+E+ E + T L + + +++ V +P+ M+FGR+A Q AKQVIIQK Sbjct: 63 VIEDGEQFVDDDGNTFDSELHIYQAESGGLEVDAYVEEPMESMEFGRIAAQVAKQVIIQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER F +VGE++ TVKRV+ GNV VD+G DG+I + + I E++R DR Sbjct: 123 VREAERTVVVDNFTQRVGEVVMATVKRVDRGNVFVDMGGIDGMISKYDLIPNESIRKNDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI +V+ RG Q+ LSRT M++LF MEVPEI G++++KA +RDPG R+KLAV Sbjct: 183 LRAYIKEVKSTPRGAQIFLSRTVNDMMIELFEMEVPEISEGVIEIKAGARDPGLRSKLAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ +V+ Sbjct: 243 KAKDKRIDPIGSCIGMRGARVQAVSNELNGERVDIILWDEDPAQFVINAMAPAEVSSIVV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ G +++ V ++QL+LAIGR GQN++LAS+LTGW +++++ + + K+ + + Sbjct: 303 DEEKGSMDIAVEEDQLALAIGRGGQNIKLASKLTGWKLNVMSLADADDMQAKELQKTGEK 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 + + VD +A +L+ EG+ ++E+A + ++ IE FD E E+Q RA+ D Sbjct: 363 LAEKLGVDAEVAGVLIDEGYTSLDEIADAESDVLSKIEEFDSEMVGELQERAQ------D 416 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K + + +E L + G+D + +L + I T+E LA ++ +LL Sbjct: 417 AQLVKALNDSEATEILLGVEGVDDALANSLVDAEITTVEALAELAIVELLE--------- 467 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + +G D ++I+ AR K GW + Sbjct: 468 ------IQDVGN--DNASAIIMAAREKEGWFD 491 >gi|224367580|ref|YP_002601743.1| transcription elongation factor NusA [Desulfobacterium autotrophicum HRM2] gi|223690296|gb|ACN13579.1| NusA [Desulfobacterium autotrophicum HRM2] Length = 482 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 177/409 (43%), Positives = 274/409 (66%), Gaps = 4/409 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ + V+ EK I+ +V++S + ++++ AA+ GT +DI V ++G++ +F+ EVV Sbjct: 8 RVIEQVSREKGINIEVLISTIKEAVESAAKKKLGTRADIEVHYEEKSGEVEVFQFKEVVL 67 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV + +++LK + DP+ +IG + + +FGR+A QSAKQVIIQK++EAER+ Sbjct: 68 EVNDPDIELTLKDGQQYDPACEIGDSLGIKVDTSEFGRIAAQSAKQVIIQKMKEAERNAV 127 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 Y F K GEII+G V+R++ GN+IV+LG ++ V+ E + RE+ R GDR+++YI DV Sbjct: 128 YENFIHKKGEIINGIVQRIDRGNIIVNLGQAEAVLTSREQMPRESYRRGDRIRAYILDVL 187 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 E RG QV+LSRTHP+F+ KLF EVPEI GIV ++ +R+ G R+K+AV S+DS +DP Sbjct: 188 EEARGSQVILSRTHPEFVAKLFATEVPEIAEGIVTIRGTAREAGVRSKIAVSSTDSDVDP 247 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VGACVGM+G+RVQ++V ELR EK+DIV W+PD A FV NAL PA + +V++DED +EV Sbjct: 248 VGACVGMKGNRVQSIVQELRGEKVDIVPWNPDVAKFVCNALAPAEIARVIIDEDNRSMEV 307 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 IVP + LS+AIG+ GQNVRLA +LTGW +++++E+E S ++ ++ M V Sbjct: 308 IVPDDFLSIAIGKNGQNVRLACRLTGWHLEVMSEDEYSSELKQGYDS----LMSIPGVSL 363 Query: 371 IIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +A L GF+ ++++ ++ S+ E + RA++ LE Sbjct: 364 ALAEKLFKGGFSSFKDVSLANPGDLISVTDLSESDVEALVLRAKKMLEA 412 >gi|332704826|ref|ZP_08424914.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis Bay] gi|332554975|gb|EGJ52019.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis Bay] Length = 494 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 174/396 (43%), Positives = 265/396 (66%), Gaps = 5/396 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ + YG DI V + +TG+I +F Sbjct: 4 ELRKAIDQISKDRGIDRDLLVDTLEEAVRSSVVRKYGDELDIEVNFSEDTGEIEVFHYKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVE+ +IS++ AR DP + + + L D GR+A QSAKQVIIQ++R+AE+ Sbjct: 64 VVDEVEDPNTEISMEDARQHDPGVQMDDDIGFKLNIEDLGRIAAQSAKQVIIQRMRDAEQ 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+KD++GEI+SG ++R + I++LG ++ ++ R+E I +E + GDRV+ YI Sbjct: 124 EIIFEEYKDRMGEIVSGIIQRRDRSGWIINLGRTEALLPREEQIPKERYKRGDRVQGYII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E RGPQV+LSR+HP++M LF EVPE+ + +V++ V+RDPGSRAK+AV S D Sbjct: 184 NVLKEGRGPQVILSRSHPEYMSALFRREVPEVADSVVKIMGVARDPGSRAKVAVMSRDRD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q +V E R E+IDIVVW PD A + NAL PA++T++ +DE+ Sbjct: 244 VDPVGACVGIRGSRIQNIVQEFRGERIDIVVWKPDIADYARNALSPALITRITVDEEETL 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QL+LAIGR+GQNV+LAS+L GW IDI TE +R + + Q Q N Sbjct: 304 LEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIFTE-----SRYGELHAARQTLEQVAN 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 V EI + GF +EE+A + ++ I G E Sbjct: 359 VVEINIERFLEAGFDSLEEVARAEDEDLLKIRGMSE 394 >gi|218887601|ref|YP_002436922.1| transcription elongation factor NusA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758555|gb|ACL09454.1| NusA antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 443 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 178/395 (45%), Positives = 264/395 (66%), Gaps = 5/395 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K +DRD+++ + ++++ + +G D V N ETG+I +++ Sbjct: 3 LELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV++VEN +ISL+ AR DPS+ + + + D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVVKKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD+ GEI+SG ++R + I++LG ++ ++ ++E I RE+ + GDRV++ + Sbjct: 123 QEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRVQAIL 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ VSRDPGSRAK AV S D Sbjct: 183 IDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAVMSRDR 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V E+R E+IDIVVWSPD AT+ NAL PA+++++V+DE+ Sbjct: 243 DVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVVDEEEN 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 303 LLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTE-----TRYNEANAIGRGLEQIA 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +V EI +A GF +E L E+AS G Sbjct: 358 SVAEISIEQFIAAGFQSIERLREADDEELASALGL 392 >gi|322418688|ref|YP_004197911.1| NusA antitermination factor [Geobacter sp. M18] gi|320125075|gb|ADW12635.1| NusA antitermination factor [Geobacter sp. M18] Length = 397 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 171/338 (50%), Positives = 233/338 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + Sbjct: 5 FNLKHTIDQIVKEKGIDKGIVVEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAE Sbjct: 65 TVVDEVQDSYREIELDEAREEDPDVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I Sbjct: 125 RETIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S D Sbjct: 185 TEIRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDG 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDIARFACNALAPAVVTKVYVDEEDY 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E Sbjct: 305 AMEVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSE 342 >gi|319941974|ref|ZP_08016295.1| N utilization substance protein A [Sutterella wadsworthensis 3_1_45B] gi|319804627|gb|EFW01497.1| N utilization substance protein A [Sutterella wadsworthensis 3_1_45B] Length = 514 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 198/475 (41%), Positives = 305/475 (64%), Gaps = 10/475 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--LYGTMSDIRVEINPETGDISL 62 N ++L++ D +A EK++ +DVV V+ ++ A + G +DI V ++ TG+ S Sbjct: 2 NSRDMLELVDVLASEKNVAKDVVFGVLELALASAVKRARFPGEDADIVVRVDRTTGEFSA 61 Query: 63 FRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF---GRVAVQSAKQ 116 R VV E ++ Q D P + G + PL +D GR Q AKQ Sbjct: 62 VRRWLVVPDEEGLQEPDHQEMYSDIHDEFPDLQPGDYIERPLENVDVDSAGRRFAQDAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 VI+Q++R+AER++ EF ++ I++GT+KR++ G+ IV++G + + R++ I REN+ Sbjct: 122 VILQRLRDAEREQILAEFLERHETIVTGTIKRMDKGDAIVEVGRLEARLPRNQMIPRENM 181 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R GDRV++Y+ V +G V+LSRT P+F+ KLF +EVPEI GI+++KA +RDPG+R Sbjct: 182 RTGDRVRAYVDHVGDTPKGRTVILSRTSPEFIKKLFELEVPEIEEGIIEIKAAARDPGAR 241 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D +DP+G C+GMRGSRV AV TEL E+IDIVVW+ D A FV+ AL PA V Sbjct: 242 AKIAVASHDQRVDPIGTCIGMRGSRVNAVTTELSGERIDIVVWNADPAQFVVGALEPAKV 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V+ ED +EV+V ++ L++AIGR GQNVRLAS+LTGW I+I+T +E S R + N Sbjct: 302 RSIVMLEDSHTMEVVVDEDNLAVAIGRGGQNVRLASELTGWQINILTAQEASEKRAAEVN 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + FM+++++DE A++L+ EGF+ VEE+A V E+ SIE FD ET E++ RAR Sbjct: 362 RIREEFMKSLDIDEAAANVLIDEGFSSVEEIAYVPEKELFSIEAFDHETIEELRQRARNK 421 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 L IT ++ +R+ ++ ++ G+D+ + L G+KT++DL +V++L+ Sbjct: 422 LLADAITREENLRK--ADPKMLALEGMDNDLANKLVARGVKTLDDLGDLAVEELV 474 >gi|225023298|ref|ZP_03712490.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC 23834] gi|224943943|gb|EEG25152.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC 23834] Length = 498 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 202/487 (41%), Positives = 311/487 (63%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RV I+ TG+ FR Sbjct: 4 EMLQLAEALASEKNVESEVVFEALEFALSVAAKKKADREHMDVRVSIDRNTGEYHTFRRW 63 Query: 67 EVVEEVENYTCQISLKVARD-----RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + K + D + IG + L + FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDTQKTIEEIQEEFPDSPLQIGEYYEEELENVAFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER++ EF + +++ GTVKRVE +IV++G D +I RD+ I REN R GDR Sbjct: 123 IRDAEREQILQEFLARREDVVMGTVKRVERHGIIVEIGRLDALIPRDQCIPRENFRSGDR 182 Query: 182 VKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 +++ +R +++G QV+LSRT +F+VKLF EVPEI +G++++K +RDPG RA Sbjct: 183 IRALF--LRVDEQGNSGRKQVILSRTSREFLVKLFEQEVPEIEDGLLEIKEAARDPGQRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S+D+ IDP G C+G+RGSRV AV EL E++D+V+WSP++A FVINAL PA V+ Sbjct: 241 KIAVKSNDARIDPQGTCIGVRGSRVNAVSNELAGERVDVVLWSPETAQFVINALSPAEVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ++++DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + + + Sbjct: 301 RILIDEDNHSVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVQEAEERHEAEDAQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 FMQ +NVDE A LL+ EGFA +EE+A V +E+ I GFDE T ++ RAR+ + Sbjct: 361 IRSLFMQHLNVDEQTADLLIEEGFAALEEVAYVPAAELVEI-GFDEATVETLRNRARDAI 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + + + + + V EEL ++ GID + L + GI T + LA S D+L+ G S Sbjct: 420 --LTLAIMSEEKLDEVEEELKTLNGIDQDMLRDLAQAGITTRDSLAELSTDELIEITGVS 477 Query: 475 ENKGGNI 481 E + + Sbjct: 478 EEEAKTV 484 >gi|42144|emb|CAA25200.1| unnamed protein product [Escherichia coli] Length = 494 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 191/486 (39%), Positives = 300/486 (61%), Gaps = 21/486 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F++ GEII+G VK+V N+ +DLGN ++ VI R+++ RVK++ Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDSC---------RVKTFA 174 Query: 187 YDVR--------REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 175 LATAFVACSIPFARNGGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 234 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V Sbjct: 235 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 294 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 295 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 354 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L Sbjct: 355 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 414 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSE 475 I ++ + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ Sbjct: 415 TIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTD 474 Query: 476 NKGGNI 481 K G + Sbjct: 475 EKAGAL 480 >gi|258545583|ref|ZP_05705817.1| N utilization substance A [Cardiobacterium hominis ATCC 15826] gi|258519283|gb|EEV88142.1| N utilization substance A [Cardiobacterium hominis ATCC 15826] Length = 496 Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 207/509 (40%), Positives = 303/509 (59%), Gaps = 32/509 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 +LL I +AVA EK +DR V++ + ++ A R Y +V INP TG+ FRL Sbjct: 4 DLLNIIEAVANEKEVDRSVIIEALEAALAAATRKRYPDEEIGAKVVINPRTGEYKSFRLW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN ++ VA P + +G V P+ FGR++ Q AKQ+IIQK Sbjct: 64 TVVDDEAILENPDAEMRESVAAIEFPEAHLQVGDVHEVPIENEPFGRISAQQAKQIIIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER + Y +F + G ++ G V+R E GNVIVD+ ++ I RD I RE+LR GDR Sbjct: 124 LREAERRKVYDQFIAEEGTLVHGIVRRHERGNVIVDINGAEATILRDGMIPRESLRIGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V E RGPQ+ +SR P+ + +LF +EVPEI +GI+++ V+RDPG RAK+AV Sbjct: 184 IRGYLAKVNLEMRGPQLEVSRVAPEMLKQLFTLEVPEIGSGIIEIMGVARDPGLRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG+RGSRVQ V+ EL E+IDIV+W D T+V A+ PA +T Sbjct: 244 RTFDPRIDPVGACVGIRGSRVQGVMNELAGERIDIVLWDEDPETYVRKAMAPAQITNAAA 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE +++ VP+ +L A+GR GQNVRLAS+LTGWTI++++E E ++ + + Q Sbjct: 304 DEARRVMDIAVPENKLPQAVGRGGQNVRLASELTGWTINVLSEAEFEARQEAVQDAQEQA 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +A++VD+ IA +L+ G+ E +A + E+ IE FDEET + RA +YL Sbjct: 364 LAEALDVDDEIADILIDAGYTAPEMVAYAERDELLGIEAFDEETVDALMARAADYL---- 419 Query: 422 ITLQKKIRELGVSEE----LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 Q + E+ EE L ++ GID AL ENG+ T EDLA +VD+L+ ++ Sbjct: 420 -LQQAFVAEVEPEEEMQLPLENVEGIDEATIAALQENGLHTQEDLAELAVDELVAYT--- 475 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHAR 506 G K+Q ++I+ AR Sbjct: 476 --------------GLDKEQASALILKAR 490 >gi|213425433|ref|ZP_03358183.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 431 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 176/415 (42%), Positives = 273/415 (65%), Gaps = 9/415 (2%) Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER +F+ Sbjct: 3 TKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFR 62 Query: 136 DKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ +Y V Sbjct: 63 DQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAV 122 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D ID Sbjct: 123 RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRID 182 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 PVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED ++ Sbjct: 183 PVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMD 242 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 + V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F + +++D Sbjct: 243 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDID 302 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 E A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + + Sbjct: 303 EEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLG 362 Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G + Sbjct: 363 DNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGEL 417 >gi|116748667|ref|YP_845354.1| transcription elongation factor NusA [Syntrophobacter fumaroxidans MPOB] gi|116697731|gb|ABK16919.1| NusA antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 449 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 170/349 (48%), Positives = 240/349 (68%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D V+ EK IDR ++ + ++I+ A + YGT D+ V N E G++ F+ E Sbjct: 4 ELKRLIDQVSREKGIDRQTLIHTLEEAIKSAIKKKYGTRQDLDVTYNEEYGELEAFQFKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A DP +IG + + GR+A QSAKQVIIQK+++AER Sbjct: 64 VVETVTDPDKQVSLAEAIKLDPESEIGDELGIRMDTETLGRIAAQSAKQVIIQKMKDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFK + GEI G V+RV+ ++V++G ++ ++ E I RE R GDRV++Y+ Sbjct: 124 EVVYEEFKSRKGEIAHGVVQRVDKSGIVVNMGQAEAILPPKEQIPREVFRQGDRVRAYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++ +GPQ++LSRTHP F+++LFH EVPEI GIV + + +R+PGSRAK+AV S + Sbjct: 184 DVKKISKGPQIVLSRTHPHFLIQLFHGEVPEIVEGIVSIISAAREPGSRAKIAVISKATD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQ VV ELR EKIDIV W+ D A FV+NAL PAI++KV++D+ Sbjct: 244 VDPVGACVGMKGTRVQNVVQELRGEKIDIVPWNMDPAKFVVNALAPAIISKVIIDQANRS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +EVIVP +QLSLAIG++GQNVRLAS+LT W ID+ E +Q + Sbjct: 304 MEVIVPDDQLSLAIGKKGQNVRLASRLTNWRIDVKNESRHERQKQTGYQ 352 >gi|27904831|ref|NP_777957.1| transcription elongation factor NusA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340243|sp|Q89AF4|NUSA_BUCBP RecName: Full=Transcription elongation protein nusA gi|27904229|gb|AAO27062.1| N utilization substance protein A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 497 Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 181/465 (38%), Positives = 305/465 (65%), Gaps = 1/465 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV+IN + G+ FR Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALECALAIATKKKYDQEIDVRVKINRKNGNFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV +V T +I+L+ A+ D ++ + + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVNQVLQPTKEITLEAAKFEDVTVKVNDYIEDKMISVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F+ G+I++G VK++ ++ +DLGN ++ +I +++ + REN R GDRV+ + Sbjct: 124 AMIVEQFRKYFGKILTGIVKKINRESITLDLGNNAEALILKEDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y + E RG Q+ ++R+ P+ +++LF +EVPEI I+++K+ +RDPGSRAK+AV S+D Sbjct: 184 YAIYPESRGAQLFVTRSKPEMLIELFKIEVPEIGEEIIEIKSAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +D VGACVGMRG+RVQAV +EL E+IDIV+W +SA F+IN++ PA V+ +VLDED Sbjct: 244 RVDAVGACVGMRGARVQAVSSELCGERIDIVLWDKNSAQFIINSMAPAEVSSIVLDEDRH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 I++ V L+ AIGR GQNVRLASQL+GW I+++T ++ + Q++ ++ F + + Sbjct: 304 TIDIAVDSNNLAQAIGRNGQNVRLASQLSGWEINVMTVDDLKLKHQEEKDKILNIFTKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +D+ I+++L+ EGF+ +EEL + +E+ +I +E A I+ A++ L I++ +K Sbjct: 364 KIDQKISNILIDEGFSSIEELVYIPFNELLNINSITQELAYSIRESAKKALCAIELENKK 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 I E + ++L ++ G++ K+ L + I ++EDLA +DDL+ Sbjct: 424 VINERKLHKDLLNLKGMNQKLAFKLAKKNIFSLEDLAEQGIDDLI 468 >gi|297569836|ref|YP_003691180.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus AHT2] gi|296925751|gb|ADH86561.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus AHT2] Length = 449 Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 186/400 (46%), Positives = 268/400 (67%), Gaps = 5/400 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D ++ +K I+RD+++ + +++ AA+ YG +I N E G+I LF+ Sbjct: 4 ELKRIIDQISRDKGINRDLLIEAIEEAVMSAAKKKYGHRREIEARYNDEYGEIELFQFRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +ISL A++ DP +++G + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVTDEQTEISLAEAKELDPEVEMGDELGSKMDSAADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y FK++ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVYDLFKERKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F+ KLF MEVPEI GIV+V V+R+PGSRAK+AV S++S Sbjct: 184 LDVRQSSKEPQLVLSRTCNEFLTKLFTMEVPEIAEGIVKVMGVAREPGSRAKIAVSSTES 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A +V NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARYVSNALAPAQVSMVVVDEENN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L GW ID+ +E S + ++ F Q + Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLGWRIDVKSETRYSRSIEEGF----QSLLDVA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 + E A L G + ELA +E+A+ G +E A Sbjct: 360 GISEKQAEKLYDGGISSAAELAAADPAEVATTLGLEEPEA 399 >gi|323697469|ref|ZP_08109381.1| transcription termination factor NusA [Desulfovibrio sp. ND132] gi|323457401|gb|EGB13266.1| transcription termination factor NusA [Desulfovibrio desulfuricans ND132] Length = 459 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 173/396 (43%), Positives = 263/396 (66%), Gaps = 5/396 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ A YG DI V N E G+I +F Sbjct: 3 ELKRAIDQISKDRGIDRDLLIDTLEEAVRSAVARKYGETMDIEVAFNEERGEIEVFEFKV 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ AR DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+ Sbjct: 63 VVDEVHDPISEISLEDARTHDPNAQLDDEMGFPVKVEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+KD+V EI SG ++R + I++LG ++ ++ ++E I RE + GDRV++YI Sbjct: 123 EIIYEEYKDRVSEIASGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQAYII 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +E RGPQV++SR+HP +MV+LF EVPE+ +G V++ V+RDPG RAK+AV S D Sbjct: 183 DVLKESRGPQVIVSRSHPDYMVELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q VV EL+ E+IDIVVWSPD A + +AL PA++T++ +D++ Sbjct: 243 VDPVGACVGIRGSRIQNVVQELKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE +R + N + Q + Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTE-----SRYGELNAARKGMDQIAS 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 V E+ + GF +E + E+ +I+G E Sbjct: 358 VAEVPMENFFSAGFESIESIVQASDEELLAIKGMTE 393 >gi|95929628|ref|ZP_01312370.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95134325|gb|EAT15982.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 388 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 166/336 (49%), Positives = 237/336 (70%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + D V +K +DRD+++ + ++ AA Y ++ N E G++ LF + V Sbjct: 5 LNHVIDQVVKDKGVDRDILVEALESAVLSAANKKYRNTRELEAHYNTEQGEVELFEFVTV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ +I L+ AR+ DP ++ G + + F R+A Q+AKQVIIQKVREAER+ Sbjct: 65 VDEVQDSYKEIDLEEAREIDPDVECGDSLGMKMDSGSFSRIAAQTAKQVIIQKVREAERE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EFKD+VGE+++G V+R E G++IVDLG ++ ++ E + REN R DRV++YI + Sbjct: 125 GVYNEFKDRVGELVNGIVRRYERGDLIVDLGRAEALLPHREQVPRENYRQADRVRAYIAE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+ +GPQ++LSRTHP +++LF EVPEI GIV++ + SR+PGSRAK+AV S D + Sbjct: 185 VKMSPKGPQIILSRTHPSLVIELFKTEVPEISEGIVEIVSCSREPGSRAKIAVVSHDPDV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ W+PD A F +AL PA V++V +D + + Sbjct: 245 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWTPDMARFACSALAPADVSRVYVDNEEQAM 304 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 E+IVP +QLSLAIG++GQNVRLA++L GW IDI +E Sbjct: 305 EIIVPDDQLSLAIGKKGQNVRLAARLIGWKIDIKSE 340 >gi|77919153|ref|YP_356968.1| transcription elongation factor NusA [Pelobacter carbinolicus DSM 2380] gi|77545236|gb|ABA88798.1| NusA antitermination factor [Pelobacter carbinolicus DSM 2380] Length = 406 Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 172/338 (50%), Positives = 234/338 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 + L I + V EK IDR V++ + ++ AA Y D+ N G++ LF + Sbjct: 3 VNLNHIIEQVVKEKGIDRGVLVEALESAVLSAANKKYRNTRDLEAHFNDGLGEVELFEFV 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +I L+ AR+ D +++G + + +F R+A Q+AKQVIIQKVREAE Sbjct: 63 TVVDEVVDSYKEIDLEEAREIDEEVEVGDSLGMKIESGNFSRIAAQTAKQVIIQKVREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R++ Y EFKD+VGE+++G V+R E G++IVDLG ++G++ E + REN R GDR + I Sbjct: 123 REKIYNEFKDRVGELVNGIVRRYERGDLIVDLGLAEGLLPHREQVPRENYRQGDRARVLI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GPQ++LSRTHP + LF EVPEI GIV++KAV+R+ GSR K+AV S D Sbjct: 183 SEVKISTKGPQIILSRTHPGLVASLFQFEVPEIAEGIVEIKAVAREAGSRTKIAVASYDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDIV WSPD FV +L PA VT++ LD D Sbjct: 243 DVDPVGACVGMRGSRVQNVVSELRGEKIDIVPWSPDVGRFVCASLAPAEVTRIYLDNDEQ 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +EVIVP +QLSLAIG++GQNVRLA++LTGW IDI +E Sbjct: 303 ALEVIVPDDQLSLAIGKKGQNVRLAARLTGWNIDIKSE 340 >gi|319778227|ref|YP_004129140.1| Transcription termination protein NusA [Taylorella equigenitalis MCE9] gi|317108251|gb|ADU90997.1| Transcription termination protein NusA [Taylorella equigenitalis MCE9] Length = 490 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 186/467 (39%), Positives = 294/467 (62%), Gaps = 6/467 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ DA+A+EK++ + + + + ++ A + + +D+ V I+ +TG+ R E Sbjct: 4 EIIHFIDAMAHEKNLPVEEIFAAIEGALASAMKKQFKEGADVVVRIDRDTGNYVGVRRWE 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ + A + P I +G + +PL P +FGR+ Q A+QVI+QK+R+ Sbjct: 64 VVPDEHGIQEPEREEIYSDAVEDHPDIKVGDFIEEPLEPQEFGRIGAQIARQVILQKMRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 +ER + EF + +I+SG VKR++ G+V+V++G + + + E I +E+ R GDRV++ Sbjct: 124 SERKQWIDEFVAQNDKIVSGVVKRIDKGDVVVEVGKLEARLPKAEMIPKESFRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + +E +G + LSR P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 YVQKIDKEAKGQIIQLSRIDPEFLRELFEYEVPEIEQGLLEIKAAARDPGIRAKIAVQAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E+IDIV+WS + A FVI+AL PA V+ +++DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVGAVRHELNGEQIDIVLWSDEPAEFVISALSPAHVSSIIVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E L+ AIG RGQNVRLAS LTGW I+I+T EE +Q++ + F Sbjct: 304 KHVMDVVVDDENLAKAIGTRGQNVRLASDLTGWQINIMTPEESQARQQEEDQSIMKLFTD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE IA +L+ EGF +EE+A V E+ IEGFDEE E++ RAR L + Sbjct: 364 KLDIDEEIATVLIEEGFTGLEEIAYVPEQELLEIEGFDEELVHELRNRARHSL---SVAA 420 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ + S+ L I G+ +++ L EN I T +DLA + D+LL Sbjct: 421 AERDERVASSKGLIDIDGLTTEMVSKLVENNISTRDDLAELATDELL 467 >gi|212704654|ref|ZP_03312782.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098] gi|212671888|gb|EEB32371.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098] Length = 438 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 175/383 (45%), Positives = 259/383 (67%), Gaps = 7/383 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K +DRD+++ + D+++ + + + D+ V N TGDI +++ Sbjct: 3 LELKKAIDQISKDKGLDRDMLIKTLEDAVRTSVQRRFSEDMDVEVRYNDNTGDIEVYQFK 62 Query: 67 EVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE EVEN I + AR DPS+ I V + D GR+A QSAKQVIIQ++R+ Sbjct: 63 IVVEDGEVENEDTHIGITEARTHDPSVQIDDEVGFRVKVEDLGRIAAQSAKQVIIQRMRD 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE++ Y E+KD++GEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + DRV++ Sbjct: 123 AEQEIIYDEYKDRMGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRNDRVQA 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DVR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 183 IIIDVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLSR 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+V+++V+DE+ Sbjct: 243 ERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPDIATYARNALAPAMVSRIVVDEE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE R + N Q Sbjct: 303 ENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTE-----TRYNEANAIGHGLEQ 357 Query: 365 AINVDEIIAHLLVAEGFADVEEL 387 +V E+ + L+ G+ ++ L Sbjct: 358 VASVAEVSMNQLLEAGYTSLDLL 380 >gi|317153847|ref|YP_004121895.1| transcription termination factor NusA [Desulfovibrio aespoeensis Aspo-2] gi|316944098|gb|ADU63149.1| transcription termination factor NusA [Desulfovibrio aespoeensis Aspo-2] Length = 466 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 170/394 (43%), Positives = 262/394 (66%), Gaps = 5/394 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ A +G DI V N ++G+I +F Sbjct: 3 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFKV 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISL+ AR+ DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+ Sbjct: 63 VVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+KD++GEI SG V+R + I++LG ++ ++ +DE I RE + GDRV++YI Sbjct: 123 EIIFEEYKDRLGEITSGIVQRRDRTGWIINLGRTEALLPKDEQIPRERYKRGDRVQAYII 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +E RGPQV++SR+HP +M++LF EVPE+ +G V++ V+RDPG RAK+AV S D Sbjct: 183 DVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q VV E++ E+IDIVVWSPD A + +AL PA++T++ +D++ Sbjct: 243 VDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE +R + N + Q + Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTE-----SRYGELNASRKGMDQVAS 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 V EI GF +E + E+ +I G Sbjct: 358 VAEIPMESFFNAGFESLESIVRATNEELLAINGL 391 >gi|304414228|ref|ZP_07395596.1| transcription termination/antitermination L factor [Candidatus Regiella insecticola LSR1] gi|304283442|gb|EFL91838.1| transcription termination/antitermination L factor [Candidatus Regiella insecticola LSR1] Length = 506 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 183/475 (38%), Positives = 300/475 (63%), Gaps = 12/475 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ R+ + + ++ A + + ++RV I+ +TGD FR + Sbjct: 4 EILAVVEAVSNEKSLPREKIFEALEIALATATKKKHEQEIEVRVNIDRKTGDFETFRRWK 63 Query: 68 VVEEVENYTCQISLKVARD-------RDPSI----DIGGVVSDPLPPMDFGRVAVQSAKQ 116 VV EV T +I+L+ A++ ++ I +I + D + + F R+ Q+AKQ Sbjct: 64 VVSEVVMPTREITLEAAQEISKEEAQQNTPISTESEIPTYIEDQIKSVVFDRITTQTAKQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISREN 175 VI+QKVREAER +F+++ G+I++ TVK+V ++I+DLGN ++G+I +++ + REN Sbjct: 124 VIVQKVREAERAVVIEQFREQEGKIVTATVKKVSRESIILDLGNNAEGIIGQEDMLPREN 183 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 +RPGDR++ +Y++R E RGPQ+ +SR+ P+ +++LF +EVPEI ++++KA RDP S Sbjct: 184 IRPGDRIRGILYEIRPEARGPQLFISRSRPEMLIELFRIEVPEIDEELIEIKAAIRDPAS 243 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FV+NA+ PA Sbjct: 244 RAKIAVKTNDKRIDPIGACVGMRGARVQAVSNELGGERIDIVLWDDNPAQFVLNAMAPAE 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V+DED + + V + + AIGR GQNVRL SQL+GW ++++T E Q + Sbjct: 304 VASIVVDEDAKTMNIAVEEGNSAQAIGRNGQNVRLVSQLSGWELNVMTINELKEKCQAET 363 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 F++ + +DE A +LV F+ +EELA V SE+ I+ FD++ E++ RA+ Sbjct: 364 RTAIDMFIEHLEIDEECATVLVEAEFSSLEELAYVPESELPEIDSFDKKRLQELRDRAQN 423 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 L + + ++ + +++L ++ +D + L G+ T+EDLA V DL Sbjct: 424 VLTTLALKKEESFGDNKPADDLLNLASLDRDMAFKLAACGVCTLEDLAEQGVSDL 478 >gi|303326256|ref|ZP_07356699.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3] gi|302864172|gb|EFL87103.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3] Length = 464 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 174/392 (44%), Positives = 265/392 (67%), Gaps = 7/392 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K +DRD+++ + D+++ + + D+ V N +TGDI +++ Sbjct: 3 LELKKAIDQISKDKGLDRDMLIDTLEDAVRTSVLRRFSEDMDVEVTYNDDTGDIEVYQFK 62 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ V N QI+L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R+ Sbjct: 63 IVVEDDDVANEDTQIALADAREHDPSVQLDDEMGFRVKVEDLGRIAAQSAKQVIIQRMRD 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE++ Y E+KD+VGEI+SG ++R + G +V+LG ++ ++ R+E I RE+ + GDRV++ Sbjct: 123 AEQEIIYEEYKDRVGEIVSGIIQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQA 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 183 LIIEVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLSR 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSP+ AT+ NAL PA+V+++V+DE+ Sbjct: 243 ERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPEIATYARNALAPALVSRIVVDEE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE R + N Q Sbjct: 303 ENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTE-----TRYNEANAIGHGLEQ 357 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIA 396 +V E+ L+ G++ ++ L E+A Sbjct: 358 VASVAEVSIEALLEAGYSSLDALREASDEELA 389 >gi|319760247|ref|YP_004124185.1| transcription elongation protein nusA [Candidatus Blochmannia vafer str. BVAF] gi|318038961|gb|ADV33511.1| transcription elongation protein nusA [Candidatus Blochmannia vafer str. BVAF] Length = 507 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 299/482 (62%), Gaps = 15/482 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EKS+ ++ + + ++ A + Y DIRV I+ ++G I FR Sbjct: 4 EILFVVEAVSNEKSVPKEKIFLALESALITATKKQYQQDIDIRVTIDRKSGKICTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + T +I+L+ AR + I I + D + + F R+ Q+AKQVIIQK+REAER Sbjct: 64 VVDQVVHPTKEITLEAARLENSKISINDYIEDIVESVGFDRITTQTAKQVIIQKLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F ++ G II+G +K++ + VDLGN ++G+I+R++ + REN R GDR++ + Sbjct: 124 MIIIEQFLNRQGSIITGVIKKINRNAIHVDLGNNAEGIIKREDMLPRENFRLGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V+ E +G Q+ +SRT + +++LF +EVPEI ++ VK+ +RDPGSR+K+AV ++D Sbjct: 184 CLVKPESKGHQLFISRTCTEMLIELFRIEVPEIGEEVITVKSAARDPGSRSKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDP+GACVGMRG+RVQAV +EL E+ID+++W + FVINA+ PA V +++DED Sbjct: 244 RIDPIGACVGMRGARVQAVSSELGGERIDVILWDDNPVQFVINAMSPADVVSIIVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQN+RL SQL+GW ++++T E RQ + F+ + Sbjct: 304 SMDISVDESNLAQAIGRNGQNIRLVSQLSGWALNVMTTHELEKKRQSELYNTINIFVHVL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEG-FDEETAVEIQGRAREYLEG------ 419 N+DE A +L+ GF+ +EELA V I+E+ SI G FD +T ++ +A++ L Sbjct: 364 NIDEKSARVLIDSGFSSLEELAYVPITELLSIGGVFDIKTVELLRSKAKQALTNFTESGG 423 Query: 420 ----IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + + Q + EL + G+ +I + L E+GI T++DLA D+L SE Sbjct: 424 SIGSMHKSNQDNCDSVNAVSELLKLSGLKYEIALKLVEHGIYTLQDLAE---QDILSLSE 480 Query: 476 NK 477 K Sbjct: 481 IK 482 >gi|329120394|ref|ZP_08249061.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200] gi|327462349|gb|EGF08675.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200] Length = 502 Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 199/488 (40%), Positives = 310/488 (63%), Gaps = 18/488 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D DVV + ++ AAR G ++RVEI+ +TG+ +R Sbjct: 1 MLQLAEALASEKNVDADVVFDALEVALSTAARKKSGREHMNVRVEIDRDTGEHRTYRRWL 60 Query: 68 VVEEVENYTC---QISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+YT + +++ ++ PS I IG + + FGR A +AKQ+I+Q++ Sbjct: 61 IVAD-EDYTYPDEEKTIEEIQEEIPSTQIQIGEYYEEQIENESFGRQAAMTAKQIILQRI 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ +F + +II+GTVKR E ++V+L G D +I RD+ I REN R GD Sbjct: 120 RDAEREKVLNDFLENRDDIITGTVKRTERHGIVVELIPGKLDALIPRDQCIPRENFRSGD 179 Query: 181 RVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R+++ +R E+ G QV+LSR +F+ KLF EVPEI +G+++++ +RDPG R Sbjct: 180 RIRALF--LRVEEIGQSGRKQVILSRASREFLAKLFEQEVPEIADGLLEIREAARDPGHR 237 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+WSPD+A FVINAL PA V Sbjct: 238 AKIAVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVLWSPDTAQFVINALSPAEV 297 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +++V+DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + Sbjct: 298 SRIVIDEDNHAVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVKEAEERHAAEDA 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 F + +NVDE A +LV EGF +EE+A V E+ I GFDE T ++GRAR+ Sbjct: 358 AIRSLFTEHLNVDEETATVLVEEGFTSLEEIAYVPSEELVEI-GFDEATVDALRGRARDA 416 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + + ++K++E ++E+L ++ G D + L + GI + LA SVD+L+ + Sbjct: 417 ILSLAMAKEEKLQE--IAEDLRTLDGTDEDMLRDLAQAGITDRDALAELSVDELIEITGV 474 Query: 477 KGGNIEKF 484 + G EK Sbjct: 475 ETGEAEKI 482 >gi|146329748|ref|YP_001208968.1| transcription termination factor [Dichelobacter nodosus VCS1703A] gi|146233218|gb|ABQ14196.1| transcription termination factor [Dichelobacter nodosus VCS1703A] Length = 495 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 189/470 (40%), Positives = 292/470 (62%), Gaps = 7/470 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 ELL I +AVA EK +DR+V+ + ++ A R +G + RV I+ ++G+ FR+ Sbjct: 4 ELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETFRVW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++V++ +EN +I VA P D+ G + + + FGR++ Q AKQ+IIQK Sbjct: 64 KIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQIIIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER++ Y +F ++ G ++ G V+R E GN IVDLG +G I R++ I RE LR GDR Sbjct: 124 LREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLGGVEGTILRNDMIPREPLRSGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + Y+ V RE RGPQ+ +SR P+ +++LF EVPEI +G++++ +RDPG RAK++V Sbjct: 184 ILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRAKISV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG+RGSRVQ VV EL E+IDIV+W D+ T+V A+ PA+++ + Sbjct: 244 RTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVISDTCV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E I++ VP+E+L A+GR GQNVRLAS+LTGWTI++++E E + Q + + Q Sbjct: 304 NEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSAQEQS 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++VDE +A L+A G E +A E+ +I+ FD E ++ RA Y+ ++ Sbjct: 364 LSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYV-MVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ E + + + G+DS + L GI T EDLA SV++L+ Sbjct: 423 AFKEEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELI 472 >gi|162454076|ref|YP_001616443.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56'] gi|161164658|emb|CAN95963.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56'] Length = 547 Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 207/489 (42%), Positives = 299/489 (61%), Gaps = 43/489 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L I D VA EK ID+ +++ + +I KAA+S++G ++ N +TG I LF+ + V Sbjct: 14 LGSILDQVAKEKGIDKKILVETIEAAILKAAQSVFGPTRELEARFNEDTGQIDLFQYMTV 73 Query: 69 VEEVENYTCQISLK-------------------------VARDRDPSIDIGGVVSDPLPP 103 VE V +IS+ + RD + G ++ Sbjct: 74 VEAVTEPEREISITDVDKLKLDATLGEELGFQVFWRPEDAEKARDQDKEYGDILKLKHGR 133 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD 162 FGR+A Q+AKQV++Q+VR+AERD + E+KD+ GE+I G V+R E G N+IVD+G ++ Sbjct: 134 TTFGRIAAQTAKQVLLQRVRDAERDLIFNEYKDRKGELIRGIVRRFEKGNNIIVDIGRTE 193 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 GV+ E RE RPGDR+ +Y+ D+ RE RGPQV+LSR+ P+ + KLF EVPEIY G Sbjct: 194 GVLTFREQTPRETYRPGDRIVAYVKDIDREARGPQVILSRSDPRLVEKLFEAEVPEIYEG 253 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 IV++ +V+R+PG+R+K+AV S D+ +DPVGACVGM+GSRVQAVV ELR EKIDIV + D Sbjct: 254 IVRIVSVAREPGARSKIAVTSRDADVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDRD 313 Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A +VI A++PA V KV++DE GR+E++VP E+LSLAIGR+GQNVRLA+QLT W +DII Sbjct: 314 PARYVIAAIQPAEVHKVIVDEADGRMELVVPDEKLSLAIGRKGQNVRLAAQLTNWKLDII 373 Query: 343 TEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +E + K E +Q ++ V E IA + GF +EE++ + E+A+I G Sbjct: 374 SE-----TKFKQMEEEAISALQQMDVVTEQIAKSMYRLGFRALEEVSEASVEELAAIPGL 428 Query: 402 DE-ETAVEIQGRAREYLEGIDITLQKKIRE-------LGVSEELCSIPGIDSKIKVALGE 453 E A I+ +A +E + Q++IR L E L I G+ + V L E Sbjct: 429 GGVEAADRIKSQADTTMERLR---QERIRSASSRTEPLTDRERLMFIRGVGDRTVVLLEE 485 Query: 454 NGIKTMEDL 462 G +++ED+ Sbjct: 486 AGYRSVEDV 494 >gi|42523053|ref|NP_968433.1| transcription elongation factor NusA [Bdellovibrio bacteriovorus HD100] gi|39575258|emb|CAE79426.1| N utilization substance protein A [Bdellovibrio bacteriovorus HD100] Length = 462 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 175/404 (43%), Positives = 258/404 (63%), Gaps = 8/404 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L ++ D V +K ID+ VV+ + + AAR YGT +I N +TG++ LF E Sbjct: 8 DLSKVIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFKE 67 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ + +I L A+ DP++ + + + D GR+A Q+AKQ+I+QKVR+A Sbjct: 68 VVPREKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRDA 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GEI SG +RVE G ++VDLG ++ I E I E +PGDR++ Y Sbjct: 128 ERNIIFNEFEERKGEIASGIARRVEKGAIVVDLGRTEAYIPPREQIPGEQYKPGDRIQGY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ RGPQ+++SR ++++KLF MEVPEIY+G+V++ A +R+PG RAK+AV S D Sbjct: 188 LSEVRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRSKD 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +S+DPVGACVGM+GSRVQ +V ELR EKIDIV W D F NAL PA +++V LD+ Sbjct: 248 NSVDPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDDAN 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364 +E++VP QLSLAIG+RGQNVRLA++LT W +DII+E S + FN M Sbjct: 308 REMEIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIISESSAASRTAESIFN-----LML 362 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + E +A + GF + +A + E+ +I G+D+ E Sbjct: 363 IPGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAE 406 >gi|332999998|gb|EGK19581.1| transcription elongation protein nusA [Shigella flexneri K-218] Length = 407 Score = 336 bits (861), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 174/393 (44%), Positives = 260/393 (66%), Gaps = 4/393 (1%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G V D + + F R+ Q+AKQVI+QKVREAER +F++ GEII+G VK+V Sbjct: 1 MGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 60 Query: 153 NVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 N+ +DLGN ++ VI R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++L Sbjct: 61 NISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 120 Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 F +EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL Sbjct: 121 FRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGG 180 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 E+IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLA Sbjct: 181 ERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLA 240 Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 SQL+GW ++++T ++ Q + + F + +++DE A +LV EGF+ +EELA V Sbjct: 241 SQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVP 300 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451 + E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L Sbjct: 301 MKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKL 360 Query: 452 GENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 G+ T+EDLA +DDL G ++ K G + Sbjct: 361 AARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 393 >gi|317484449|ref|ZP_07943362.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6] gi|316924309|gb|EFV45482.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6] Length = 434 Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 260/381 (68%), Gaps = 5/381 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I + + Sbjct: 3 LELKKAIDQISKDKGLDRDMLVDTLEDAVRTSVIRKYGENIDVEVSYNDDTGEIQVHQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV++V + +I ++ AR+ DPS+ + + PL D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVVDDVADPDTEIDIEKARELDPSVQLDDEIGFPLKVTDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y EFKD+VGEI SG ++R + G I++LG ++ ++ ++E I RE+ + GDRV++ I Sbjct: 123 QELIYEEFKDRVGEICSGIIQRRDKGGWIINLGRTEAILPKEEQIPREHYKRGDRVQALI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++E RGPQ+++SR+H + LF EVPE+ +G VQ+ V+RDPGSRAK+AV S + Sbjct: 183 IEVKKEGRGPQIVISRSHRDYTAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVLSRER 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V EL E+IDIVVWSP+ +T+ NAL PA+++++V+DE Sbjct: 243 DVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSPEISTYARNALAPAVISRIVVDEAEN 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 303 LLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTE-----TRYNETNAIGRGLEQVA 357 Query: 367 NVDEIIAHLLVAEGFADVEEL 387 +V E+ LV+ GF +E+L Sbjct: 358 SVAEVSVDSLVSAGFTTLEQL 378 >gi|153004006|ref|YP_001378331.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|152027579|gb|ABS25347.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 556 Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 188/435 (43%), Positives = 262/435 (60%), Gaps = 36/435 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V + Sbjct: 10 ILDQVAKDKGIDRTRLVEILEEAIGSAAKRHFGMERNLKARYDEEKGQVDLFQVLTIVTD 69 Query: 72 VENYT------CQISLKVARDRDPSIDIGGVVSDPLP----------------------- 102 T I + VA ++ ++ G + P+ Sbjct: 70 PTEETPLADPVNMIPVSVAHEKGIEVEPGDELDFPIYYRTEDEAEARAQDEQWGDLLKLK 129 Query: 103 --PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG Sbjct: 130 TYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLGR 189 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 ++ V+ E + RE+ R GDR+++Y+ DV RE +GPQ++LSR + KLF MEVPEI Sbjct: 190 AEAVLPVREQVPRESYRAGDRIQAYVMDVLRESKGPQIILSRASVDLLRKLFEMEVPEIA 249 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W Sbjct: 250 EGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPWD 309 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQLTGW +D Sbjct: 310 DDYARFVCNALAPAEVSRVLLDEQNKAMEIIVPDDQLSLAIGRRGQNVRLASQLTGWKLD 369 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I +E +R K+ E AI + E +L A GF +++A + G Sbjct: 370 INSE-----SRVKEMREFATESFGAIGIPEATQEMLYAHGFRKAQDVANAASEMLTQFPG 424 Query: 401 FDEETAVEIQGRARE 415 F + E+Q RARE Sbjct: 425 FTMDMIPELQKRARE 439 >gi|85860522|ref|YP_462724.1| transcription elongation factor NusA [Syntrophus aciditrophicus SB] gi|85723613|gb|ABC78556.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 420 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 177/400 (44%), Positives = 267/400 (66%), Gaps = 5/400 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ + + ++ +D+ V++ + ++ AAR G DI N E G+I +F+ Sbjct: 4 ELKRLIEQMGKDRGLDKSVIIEALETAMLTAARKKLGAHVDIEAHYNDELGEIEVFQFKT 63 Query: 68 VVEEVENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE+V + QIS++ A RD D + G + + FGR+AVQ+AKQ+I+Q+V++AE Sbjct: 64 VVEKVVDPDMQISIEAAHRDLDEEAEPGDSLGMKIDASTFGRIAVQTAKQIIVQRVKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y E+KD+ GE+++G V+R E G++IV+LG ++GVI E I RE + GDR++SYI Sbjct: 124 RDNVYDEYKDRKGELVNGFVQRFEAGSIIVNLGRAEGVIPVSEQIHREVYKRGDRIRSYI 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ++LSRTHP F+ LF +EVPEI G+++V V+R+PG RAK+AV + D Sbjct: 184 CEVKKVSKGPQIILSRTHPNFLKALFEVEVPEIAEGLIEVLGVAREPGKRAKIAVRTKDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ+VV ELR EKIDI+ +S D + +VI+AL PA V+ V + E+ Sbjct: 244 DIDPVGACVGMRGARVQSVVQELRGEKIDIIPYSEDPSQYVISALSPAKVSHVTVYENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QLSLAIG+ GQNVRLA +LTGW ID+ +E D+ + D+ RT ++ Sbjct: 304 AMEVVVPDDQLSLAIGKNGQNVRLAVKLTGWKIDVKSESVDAGSENADY--RT--LLKIP 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 ++E +A L +G V +A +++I G +E TA Sbjct: 360 GMEEAMAERLFNKGLKSVAMVAAADPEMLSAIPGVEERTA 399 >gi|51246466|ref|YP_066350.1| transcription elongation factor NusA [Desulfotalea psychrophila LSv54] gi|50877503|emb|CAG37343.1| related to transcription termination factor (NusA) [Desulfotalea psychrophila LSv54] Length = 466 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 175/403 (43%), Positives = 273/403 (67%), Gaps = 5/403 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L +I D ++ ++ ID+ +++S + ++++ AA+ +G+ DI V N E G++ +F+ Sbjct: 4 DLKRIIDQISRDRGIDKGILVSAIEEAVESAAKKKFGSRRDIEVRYNEEYGEVDVFQFRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I+L+ AR DP++ +G + + + + D GR+A QSAKQVII ++++AE Sbjct: 64 VVEEIEDEQTEIALEDARILDPAVQLGDDLGEKMSNITDLGRIAAQSAKQVIINRMKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y +KD+VGE++SG V+R E GN++V+LG +D ++ ++ I + + GDR+++Y+ Sbjct: 124 RDVIYDMYKDRVGEVVSGIVQRFERGNMVVNLGRTDAILPKEHQIPKRTFKQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+ R Q++LSRT +F+ KLF MEVPE+ GIV+V VSR+PG RAK+AV SS+S Sbjct: 184 LEVRQTSRDCQLILSRTCDEFLEKLFQMEVPEMSEGIVRVLGVSREPGFRAKIAVSSSES 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA V+ V DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGERIDIVTWSPDIAKYVYNALAPAHVSMVRNDEERN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS+L G ID+ +E+ + + + Q ++ Sbjct: 304 SLLVVVPNDQLSLAIGRQGQNVRLASRLLGCRIDVKSEQRYANLQDPGY----QSLLKIH 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 +DE +A L A G LA +I+++ + +EE A + Sbjct: 360 GIDEGLADQLWARGIVSTAVLAQTEIADLTVLRAINEEFAAAL 402 >gi|196229760|ref|ZP_03128624.1| NusA antitermination factor [Chthoniobacter flavus Ellin428] gi|196226086|gb|EDY20592.1| NusA antitermination factor [Chthoniobacter flavus Ellin428] Length = 421 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 175/411 (42%), Positives = 270/411 (65%), Gaps = 8/411 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D +K I R+V+L + +++ AAR G D+RV+I+P++G++ ++ L Sbjct: 5 EILAGLDFFERDKGIKREVLLEAINNAVLAAARKAVGPAKDLRVDIDPKSGEMKVYAKLI 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VEN +I L +A+ + +G + P+ P DFGR+A Q+AKQ ++Q++R+AE+ Sbjct: 65 VVEKVENKHDEIKLDLAKKFKNDVQLGEELEVPVTPRDFGRIAAQTAKQAMMQRIRQAEK 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFKD+ GEI+SGTV+R E +V+VDLG + V+ E + E+ GDR+++Y+ Sbjct: 125 EMIYDEFKDRAGEIVSGTVRRFERLDVVVDLGKFEAVMPNKERVQTEDYNVGDRIRAYVV 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V+ RGP++++SR+HP F+ +LF EV EI + V++K ++R+ G R K+AV+S++ Sbjct: 185 AVQNGARGPEIIISRSHPNFVRRLFETEVSEIADRTVEIKGIAREAGHRTKIAVWSANDK 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGMRG+RV+ +V EL +EK+DI+ WS D+ FV+ AL+PA V V LDE Sbjct: 245 VDPVGACVGMRGARVKNIVRELNNEKVDIIRWSSDTKEFVLEALKPAKVKSVTLDESKKN 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER----TQFFM 363 I + V ++QLSLAIG+RGQN RL S+LTGW I+I E++ S+ +DFNER + Sbjct: 305 ILIKVDEDQLSLAIGKRGQNARLTSRLTGWDINI--EQDKSV--IEDFNERVGKAAKTLA 360 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 A+ +D+ +A LV G + +E L V+ +IA G E A EIQ A+ Sbjct: 361 DALGIDQAVAVSLVKGGLSTLETLTEVEPQDIADTVGIPLEKATEIQTAAK 411 >gi|46578925|ref|YP_009733.1| transcription elongation factor NusA [Desulfovibrio vulgaris str. Hildenborough] gi|120603474|ref|YP_967874.1| transcription elongation factor NusA [Desulfovibrio vulgaris DP4] gi|46448337|gb|AAS94992.1| N utilization substance protein A [Desulfovibrio vulgaris str. Hildenborough] gi|120563703|gb|ABM29447.1| NusA antitermination factor [Desulfovibrio vulgaris DP4] gi|311232783|gb|ADP85637.1| transcription termination factor NusA [Desulfovibrio vulgaris RCH1] Length = 428 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 178/401 (44%), Positives = 266/401 (66%), Gaps = 9/401 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL + D ++ +K ++RD++++ + ++++ + YG D+ V N E+G+I +++ Sbjct: 3 MELKKAIDQISKDKGLERDMLVATLEEAVRTSVVRKYGDDIDVEVSYNDESGEIEVYQFK 62 Query: 67 EVVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E+ I L+ AR DPS+ I + L D GR+A QSAKQVIIQ++ Sbjct: 63 IVVAELDDEDEDGNAHIVLEEARKHDPSVQIDDEMGFRLKVEDLGRIAAQSAKQVIIQRM 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AE++ Y EFKD+ GEIISG ++R + I++LG ++ ++ ++E I RE+ + GDRV Sbjct: 123 RDAEQELIYDEFKDRRGEIISGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +VR+E RGPQV++SR+H +M LF EVPE+ +G VQ+ V+RDPGSRAK+AV Sbjct: 183 QAIIIEVRKEGRGPQVIVSRSHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVL 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + +DPVGACVG+RGSR+Q VV ELR E+IDIVVWSP+ AT+ NAL PA+++++V+D Sbjct: 243 SRERDVDPVGACVGIRGSRIQNVVQELRGERIDIVVWSPEIATYARNALSPAVISRIVVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Sbjct: 303 EEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTE-----TRYNEANAIGRGL 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 Q +V EI V GF +E L E+AS G D+ Sbjct: 358 EQIASVAEISIEQFVTAGFQSIERLREASDEELASGLGIDD 398 >gi|242278479|ref|YP_002990608.1| transcription elongation factor NusA [Desulfovibrio salexigens DSM 2638] gi|242121373|gb|ACS79069.1| NusA antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 456 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 168/394 (42%), Positives = 262/394 (66%), Gaps = 5/394 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ + YG DI V N + G+I +++ Sbjct: 4 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQFKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEVE+ +I+L+ A++ DP++ I + L D GR+A QSAKQVIIQ++R+AE+ Sbjct: 64 VAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRDAEQ 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFK+++ EI+SG ++R + I++LG ++ V+ + E I RE + GDRV+++I Sbjct: 124 EIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGRTEAVLPKGEQIPRERYKRGDRVQAFII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++E RGPQ+ +SR+HP +M LF EVPE+ + V++ V+RDPG RAK+AV S D Sbjct: 184 DVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNSLDRD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q +V ELR E+IDIVVWS D A + NAL PA++T++ +DE+ Sbjct: 244 VDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDEEEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QL++AIGR+GQNV+LAS+L GW ID+ TE +R + N ++ Q + Sbjct: 304 LEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFTE-----SRYGEMNAASKGLDQLAS 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 V EI ++ GF V ++A + SI G Sbjct: 359 VAEIPVDNFLSAGFETVSQVANASEEILMSISGM 392 >gi|258404630|ref|YP_003197372.1| transcription elongation factor NusA [Desulfohalobium retbaense DSM 5692] gi|257796857|gb|ACV67794.1| NusA antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 440 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 169/396 (42%), Positives = 259/396 (65%), Gaps = 5/396 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL + D ++ ++ IDRD+++ + ++++ + + DI V + E GDI +++ Sbjct: 3 MELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVNKKFKNKLDIEVSFDEEAGDIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV++ +ISL AR DP++ + + + D GR+A QSAKQVIIQ++R+AE Sbjct: 63 VVVEEVDDPNTEISLDEARIEDPNVQLEDELGFRMEISDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD+ GEIISG ++R + I++LG ++ ++ + E I RE R GDRV+ YI Sbjct: 123 QEIIYEEYKDRRGEIISGIIQRRDRAGWIINLGRTEAILPKQEQIPRERFRRGDRVQGYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+E RGPQ+++SR+HP +M LF EVPE+ +G V + V+RDPG RAK+AV S DS Sbjct: 183 IDVRKEGRGPQIVVSRSHPDYMAALFKREVPEVGDGTVTIMGVARDPGKRAKVAVLSQDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V E + E+IDIVVW+ D AT+ +NAL PA ++++ +D+ Sbjct: 243 DVDPVGACVGVRGSRIQNIVQEFKGERIDIVVWNHDVATYAMNALSPAKISRMTVDDVEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QL+LAIGR+GQNV+LAS+L GW IDIITE + + QA Sbjct: 303 TLEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIITESRYGADPSDQAD-----LEQAE 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 +V I V G ++ L ++A+++G D Sbjct: 358 HVTGIPTDHFVQAGLGSLDALREASDEQLAAVDGMD 393 >gi|298528714|ref|ZP_07016118.1| NusA antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298512366|gb|EFI36268.1| NusA antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 432 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 163/381 (42%), Positives = 255/381 (66%), Gaps = 5/381 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL +I D ++ +K IDRD+++ + ++++ + YG+ DI V N + G+I +++ Sbjct: 3 LELKKIIDQISKDKGIDRDMLVDTLEEAVRSSVYKKYGSNLDIEVNFNEDNGEIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+E+ + +I L+ A++ DP++ + + L D GR+A QSAKQV++QK+R+AE Sbjct: 63 VVVDEIGDPNNEILLEDAKEHDPNVQLEDELGFTLDVKDLGRIAAQSAKQVLMQKMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD++GEIISG ++R + I++LG ++ ++ RDE I +E GDRV++YI Sbjct: 123 QEIIYEEYKDRIGEIISGIIQRRDRAGWIINLGRTEALLPRDEQIPKERFHRGDRVEAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVRRE R PQ+++SR+HP++++ LF EVPEI +G +++ V RDPG RAK+ V + D Sbjct: 183 IDVRRESRTPQIIVSRSHPEYLISLFKREVPEISDGTIKIMNVVRDPGKRAKVGVMTKDM 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG++GSR+ +V EL+ E+IDIV+WSPD AT+ NAL PA +T++ +DED Sbjct: 243 DVDPVGACVGVKGSRIHNIVQELKGERIDIVIWSPDIATYAANALSPARITRITVDEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QL+ AIG++GQNV+LAS L GW ID+ TE +R + E Q Q Sbjct: 303 SLEVVVPDDQLTPAIGQKGQNVKLASSLLGWKIDVYTE-----SRYNEVYEHHQVMEQLA 357 Query: 367 NVDEIIAHLLVAEGFADVEEL 387 + I EGF ++ L Sbjct: 358 SAAGISISEFNREGFDSLDSL 378 >gi|115372730|ref|ZP_01460036.1| NusA protein [Stigmatella aurantiaca DW4/3-1] gi|310823422|ref|YP_003955780.1| transcription termination factor NusA [Stigmatella aurantiaca DW4/3-1] gi|115370211|gb|EAU69140.1| NusA protein [Stigmatella aurantiaca DW4/3-1] gi|309396494|gb|ADO73953.1| Transcription termination factor NusA [Stigmatella aurantiaca DW4/3-1] Length = 565 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 196/495 (39%), Positives = 292/495 (58%), Gaps = 47/495 (9%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + D VA +K I+R V+++ + D+++ AA+ +G ++ + + E G + LF+ + VVEE Sbjct: 14 VLDQVAKDKGIERSVLIATLEDAMKTAAKKHFGQDRNLEAKYDVEKGVVELFQAITVVEE 73 Query: 72 VEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMD----------------------- 105 + + QI++ A + ++ G + + D Sbjct: 74 IVDPVQAVNQITMAEAHKKGMEVEPGDELVFQIMYRDEDAAEAKAQDDQYGDILRLKTFR 133 Query: 106 --FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 FGR+A Q+AKQVI+Q+ R+AER+ + E+KD+ EI++G +R E GN+IVDLG ++ Sbjct: 134 RGFGRIAAQTAKQVILQRTRDAERENVFNEYKDRKNEIVTGIARRFERGNIIVDLGRAEA 193 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI GI Sbjct: 194 VLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEGI 253 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + D Sbjct: 254 VVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDEDP 313 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A+FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI + Sbjct: 314 ASFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDINS 373 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E + ++F R+ + +N E++ L A GF +++A ++ I G D Sbjct: 374 --ESRVREMREFANRSLGSLPGVN--EMLIETLYAHGFRQAKDVAEASPEVLSQIPGLDP 429 Query: 404 ETAVEIQGRAREYL--------------EGIDIT-LQKKIRELGVSEELCSIPGIDSKIK 448 +Q AR+ + E I ++ EL SE + + G+ K Sbjct: 430 TRLPAMQESARKQMVDDAAELSRMDHEREAARIAEARRHPDELSQSERMARVRGLGEKTI 489 Query: 449 VALGENGIKTMEDLA 463 AL +G KT+ED+A Sbjct: 490 EALIVSGYKTVEDIA 504 >gi|325138675|gb|EGC61230.1| Transcription elongation protein nusA [Neisseria meningitidis ES14902] Length = 413 Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 186/389 (47%), Positives = 269/389 (69%), Gaps = 12/389 (3%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 +I IG + LP FGR A Q+AKQ+I+Q++R+AER++ EF +I+SGTVKRV Sbjct: 4 TIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRV 63 Query: 150 EYGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG----PQVLLSRT 203 E +IV++ G D +I RD+ I REN R GDR+++ +R E+ G QV+LSRT Sbjct: 64 ERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALF--LRVEEIGNTGRKQVILSRT 121 Query: 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQ 263 F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+RGSRV Sbjct: 122 SGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVN 181 Query: 264 AVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGR 323 AV EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV + QL+LAIGR Sbjct: 182 AVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVDENQLALAIGR 241 Query: 324 RGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 GQNVRLAS LTGW ++I+T E D N +D R + FM +NVDE A +LV EGFA Sbjct: 242 GGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR-RLFMDHLNVDEETADVLVQEGFA 300 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++ ++ G Sbjct: 301 TLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDMRNLEG 358 Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ID+ + +L E GI T +DLA +VD+L+ Sbjct: 359 IDADMLRSLAEAGITTRDDLAELAVDELI 387 >gi|94986976|ref|YP_594909.1| transcription elongation factor NusA [Lawsonia intracellularis PHE/MN1-00] gi|94731225|emb|CAJ54588.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] Length = 440 Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 253/381 (66%), Gaps = 5/381 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I +++ Sbjct: 3 LELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV + Q+S+ A+ DPS + + L D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD++GEI+SG V+R + G I++LG ++ ++ +DE I +E+ + GDRV+ I Sbjct: 123 QEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGRTEALLPKDEQIPKEHYKRGDRVQGLI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ V+RDPGSRAK+ V S + Sbjct: 183 IDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLSRER 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V EL E+IDIV+WSP+ T+ NAL PAI++++ +DE Sbjct: 243 DVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDETEN 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 303 LLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTE-----TRYNESNAVGRGLEQVA 357 Query: 367 NVDEIIAHLLVAEGFADVEEL 387 +V EI L+ G +E++ Sbjct: 358 SVAEISIETLLHSGLNTLEQI 378 >gi|220903347|ref|YP_002478659.1| transcription elongation factor NusA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867646|gb|ACL47981.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 449 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 170/383 (44%), Positives = 259/383 (67%), Gaps = 7/383 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL--FR 64 LEL + D ++ +K +DR++++ + D+++ + + D+ V N ETGDI + F+ Sbjct: 3 LELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQFK 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +V N QI L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R+ Sbjct: 63 IVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRMRD 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE++ Y E+KD+VGEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + GDRV++ Sbjct: 123 AEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQA 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 183 LIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLSR 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG+RGSR+Q +V EL E+IDIVVWS D AT+ NAL PA+V+++V+DE+ Sbjct: 243 ERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVVDEE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE R + N Q Sbjct: 303 ENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTE-----TRYNEANAIGHGLEQ 357 Query: 365 AINVDEIIAHLLVAEGFADVEEL 387 +V E+ L+ G++ +++L Sbjct: 358 VASVAEVSIEALLGAGYSSLDQL 380 >gi|197121571|ref|YP_002133522.1| NusA antitermination factor [Anaeromyxobacter sp. K] gi|220916334|ref|YP_002491638.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|196171420|gb|ACG72393.1| NusA antitermination factor [Anaeromyxobacter sp. K] gi|219954188|gb|ACL64572.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 557 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 183/435 (42%), Positives = 264/435 (60%), Gaps = 36/435 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V + Sbjct: 10 ILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQVLTIVPD 69 Query: 72 ------VENYTCQISLKVARDRDPSIDIGGVVSDPLP----------------------- 102 + + + + VA ++ ++ G + P+ Sbjct: 70 PTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRVEDEAEARAQDEQWGDLLKLK 129 Query: 103 --PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG Sbjct: 130 TYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLGR 189 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 ++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF MEVPEI Sbjct: 190 AEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEMEVPEIA 249 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W Sbjct: 250 EGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPWD 309 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+TGW +D Sbjct: 310 EDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQVTGWKLD 369 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I +E +R K+ E AI + E +L A GF +++A + G Sbjct: 370 INSE-----SRVKEMREFATESFGAIGIPEQTQEMLYAHGFRKAQDVANAAPEMLTQFPG 424 Query: 401 FDEETAVEIQGRARE 415 F + ++Q RARE Sbjct: 425 FTMDMIPDLQKRARE 439 >gi|206890467|ref|YP_002248539.1| transcription termination factor NusA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742405|gb|ACI21462.1| transcription termination factor NusA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 365 Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 166/357 (46%), Positives = 246/357 (68%), Gaps = 4/357 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + + EK I +D V+ ++ ++ A R YG S I+++I P+T DI++F + + Sbjct: 4 ELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFEIKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV++ +IS++ + + IG V PL DFGR+AVQ+AK V+ QK+RE ER Sbjct: 64 VVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIREIER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EFKDKVG I+SGTV R E GN + +G ++ ++ E + ++NL+ GD VK+YI+ Sbjct: 124 SQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGKAEAILPDKEVLPQDNLKRGDIVKAYIF 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ + P + LSRTHP F+V LF +EVPEI +GIV++K ++RDPG R K+A S D S Sbjct: 184 EVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASSKDPS 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQAVV EL+ E+IDI+ +S D + F+ AL PA V KV ++E+ Sbjct: 244 VDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINENEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD----FNERTQ 360 V+V +QLSLAIG++GQNVRLAS+LTGW+ID+++E E + + K+ F E Q Sbjct: 304 AVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFKETNQ 360 >gi|313901626|ref|ZP_07835063.1| NusA antitermination factor [Thermaerobacter subterraneus DSM 13965] gi|313468107|gb|EFR63584.1| NusA antitermination factor [Thermaerobacter subterraneus DSM 13965] Length = 473 Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 2/351 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ ETG+I + + Sbjct: 4 EFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRETGEIRVVARRD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ + QIS+ AR+ DP G VV + P DFGR+A Q+AKQV++Q++REAER Sbjct: 64 VVEEVEDPSTQISVAEAREIDPRYKPGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y EF + G+I++G V+RV+ NV VDLG ++ V+ E I E RPGDR+K YI Sbjct: 124 DLIYEEFIAREGDIVTGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D Sbjct: 184 EVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRDER 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ + Sbjct: 244 VDPVGACVGPRGARVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPETRV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFN 356 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + + + R+ D++ Sbjct: 304 ARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAAEWLAREDDWD 354 >gi|256830179|ref|YP_003158907.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256579355|gb|ACU90491.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 441 Score = 329 bits (843), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 163/405 (40%), Positives = 263/405 (64%), Gaps = 5/405 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K IDR++++ + ++I+ + YG DI V N ETG+I +++ Sbjct: 3 LELKKAIDQISKDKGIDREMLIDTLEEAIRASVTKKYGDKMDIEVTFNEETGEIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I + A DP++++ + L D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVVEEIEDPDTEILMVDALKHDPNVELDDAIGFRLQVEDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ + E+K++ GEI+SG ++R + I++LG ++ ++ +D+ I RE R GDRV+ I Sbjct: 123 QEIIFEEYKNRKGEIVSGIIQRRDRSGWIINLGRTEALLPKDKQIPRERFRQGDRVEGLI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+E RGPQ++++R+ P++M LF EVPE+ +G V + V+RDPG RAK+ V S DS Sbjct: 183 IEVRKEGRGPQIIITRSDPEYMTALFRREVPEVADGTVNIMGVARDPGLRAKVTVLSQDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+RGSR+ ++V ELR E+IDIV+WSPD AT+ NAL PA ++K+ +D++ Sbjct: 243 NVDPVGACVGIRGSRIHSIVQELRGERIDIVLWSPDIATYAANALSPARISKIAIDDEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP++QL+ AIG++GQNV+LA++L GW IDI T R ++ Q Sbjct: 303 SLEVVVPEDQLTPAIGKKGQNVKLAAKLLGWKIDIFTN-----TRFNKVHKDRHLLEQLA 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + ++ GF +E +A ++ I+G EE ++G Sbjct: 358 SAAQVSIADFAEAGFDSLEAMAACTNEQLLDIQGISEENIGALRG 402 >gi|86157527|ref|YP_464312.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85774038|gb|ABC80875.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 557 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 183/435 (42%), Positives = 264/435 (60%), Gaps = 36/435 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V + Sbjct: 10 ILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQVLTIVPD 69 Query: 72 ------VENYTCQISLKVARDRDPSIDIGGVVSDPLP----------------------- 102 + + + + VA ++ ++ G + P+ Sbjct: 70 PTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRAEDEAEARAQDEQWGDLLKLK 129 Query: 103 --PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG Sbjct: 130 TYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLGR 189 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 ++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF MEVPEI Sbjct: 190 AEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEMEVPEIA 249 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W Sbjct: 250 EGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPWD 309 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+TGW +D Sbjct: 310 EDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQVTGWKLD 369 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I +E +R K+ E AI + E +L A GF +++A + G Sbjct: 370 INSE-----SRVKEMREFATESFGAIGIPEQTQEMLYAHGFRKSQDVANAAPEMLTQFPG 424 Query: 401 FDEETAVEIQGRARE 415 F + ++Q RARE Sbjct: 425 FTMDMIPDLQKRARE 439 >gi|317121853|ref|YP_004101856.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885] gi|315591833|gb|ADU51129.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885] Length = 486 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 166/338 (49%), Positives = 235/338 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ E+G+I + Sbjct: 3 VEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRESGEIRVVARR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVEEV++ + QISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q++REAE Sbjct: 63 DVVEEVQDPSTQISLAEAREIDPRYQVGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y EF + G+II+G V+RV+ NV VDLG ++ V+ E I E RPGDR+K YI Sbjct: 123 RDLIYEEFIAREGDIITGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D Sbjct: 183 VEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG RG RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ + Sbjct: 243 RVDPVGACVGPRGVRVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPETR 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI E Sbjct: 303 VARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAE 340 >gi|108759193|ref|YP_630295.1| transcription termination factor NusA [Myxococcus xanthus DK 1622] gi|108463073|gb|ABF88258.1| transcription termination factor NusA [Myxococcus xanthus DK 1622] Length = 566 Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 184/431 (42%), Positives = 265/431 (61%), Gaps = 32/431 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + D VA +K IDR V+++ + D+++ AA+ +G ++ + +P+ G + LF+ + VVEE Sbjct: 15 VLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQAITVVEE 74 Query: 72 VEN---YTCQISLKVA-------------------RDRDPS------IDIGGVVSDPLPP 103 + + QISL A RD D + G ++ Sbjct: 75 IVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDILRLKTFR 134 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 FGR+A Q+AKQVI+Q+ R+AER+ + E++D+ EI++G +R E GN+IVDLG ++ Sbjct: 135 RGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVDLGRAEA 194 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI GI Sbjct: 195 VLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEGI 254 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + D Sbjct: 255 VVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDEDP 314 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI + Sbjct: 315 ARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDINS 374 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E + ++F R+ + +N E++ L A GF ++A +A + G D Sbjct: 375 --ESRVRELREFANRSLGSLPGVN--EMLVETLYAHGFRQARDIAEANAELLAQLPGIDP 430 Query: 404 ETAVEIQGRAR 414 +Q AR Sbjct: 431 ARIPSMQEAAR 441 >gi|296132885|ref|YP_003640132.1| transcription termination factor NusA [Thermincola sp. JR] gi|296031463|gb|ADG82231.1| transcription termination factor NusA [Thermincola potens JR] Length = 535 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 161/337 (47%), Positives = 239/337 (70%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ + + EK I DV+L + ++ A + +G+ ++RV+I+ ETG+I +F Sbjct: 4 EFIEALEELEREKGIAIDVLLEALEAALISAYKRNFGSAQNVRVDIDRETGEIKVFARKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VE+ +ISL+ A+ RDP ++ +V + P DFGR+A Q+AKQV++Q++REAER Sbjct: 64 VVEKVEDDRLEISLEEAQKRDPRYELSDIVEIEVTPRDFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF ++ G+I++G V+R + NV VDLG ++ ++ E I+ E R GDR+K+YI Sbjct: 124 GIIYEEFSNREGDIVTGIVQRQDPKNVYVDLGKTEAILAPSEQIAGEEYRHGDRIKTYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+ G+R+K+AV+S D + Sbjct: 184 EVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREAGARSKIAVYSKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL+ EKIDIV WSPD A FV NAL PA V V ++E Sbjct: 244 VDPVGACVGPKGMRVQTIVNELKGEKIDIVKWSPDPARFVANALSPAKVLDVKVNEAEKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 340 >gi|118579397|ref|YP_900647.1| transcription elongation factor NusA [Pelobacter propionicus DSM 2379] gi|118502107|gb|ABK98589.1| NusA antitermination factor [Pelobacter propionicus DSM 2379] Length = 401 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 173/338 (51%), Positives = 234/338 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 + L + + EK IDR VVL M ++ AA Y D+ N +TG++ LF + Sbjct: 5 ISLKHAIEQIVKEKGIDRQVVLEAMEQAVLTAANKKYRNTRDLEARYNSDTGEVELFEFV 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEVE+ +ISL AR+ DP +++G + + + F R+A Q+AKQVIIQKVREAE Sbjct: 65 IVVEEVEDSYKEISLDEAREIDPDVEVGDSLGEKIDSSGFTRIAAQTAKQVIIQKVREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + E+ D+ E+I+G V+R E G++++DLG ++ V+ E + RE RPGDR+++ I Sbjct: 125 RETIFNEYSDRQWEVITGMVRRFEKGDLLIDLGRAEAVLPSKEQMPREVYRPGDRIRAII 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 D+R +GPQ++LSRTHP + KLF EVPE+ GIV++ A+ RDPGSRAKLAV S+D Sbjct: 185 TDIRVTPKGPQIILSRTHPSMLAKLFEAEVPEVAEGIVEINAIVRDPGSRAKLAVSSNDP 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA V+KV +DED Sbjct: 245 DVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALSPAQVSKVFVDEDNR 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +EV+V +QLSLAIG+RGQNV LA++LTG IDI +E Sbjct: 305 ALEVVVADDQLSLAIGKRGQNVSLAARLTGCRIDIKSE 342 >gi|189424726|ref|YP_001951903.1| transcription elongation factor NusA [Geobacter lovleyi SZ] gi|189420985|gb|ACD95383.1| NusA antitermination factor [Geobacter lovleyi SZ] Length = 385 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 175/336 (52%), Positives = 234/336 (69%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + + EK IDR VV+ M ++ AA Y ++ N +TG++ LF + V Sbjct: 7 LKQAIEQIVKEKGIDRQVVIEAMEQAVLSAANKKYRNTRNLEAHYNNDTGEVELFEYVVV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +ISL AR+ DP ++G + + + DFGR+A Q+AKQVIIQKVREAER+ Sbjct: 67 VEEVQDSYTEISLDEAREMDPECEVGDELGEKIDSGDFGRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+KD+ EI++G V+R E G++++DLG ++ ++ E + RE RPGDR+++ I D Sbjct: 127 TVFNEYKDRQWEIVTGQVRRFERGDLLIDLGRAEAILSGKEQMPREVYRPGDRIRAIITD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + +GPQ++LSRTHPQ + KLF EVPEI G+V++ V RDPGSRAK+AV S D I Sbjct: 187 IAMTTKGPQIILSRTHPQMLAKLFEAEVPEIGEGLVEIVNVVRDPGSRAKIAVASHDRDI 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A FV NAL PA V KV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSADIARFVCNALSPAQVVKVFMDEEQRTL 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 EVIVP +QLSLAIG+RGQNV LA++LTG IDI E Sbjct: 307 EVIVPDDQLSLAIGKRGQNVSLAARLTGCRIDIKGE 342 >gi|262197038|ref|YP_003268247.1| NusA antitermination factor [Haliangium ochraceum DSM 14365] gi|262080385|gb|ACY16354.1| NusA antitermination factor [Haliangium ochraceum DSM 14365] Length = 538 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 196/498 (39%), Positives = 293/498 (58%), Gaps = 41/498 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + D V +K+I+RDV++ + +I AA+ +G ++ + N +TG + LF ++ V Sbjct: 5 LNMVIDQVGRDKNIERDVLVQALEQAILTAAKKTFGASRELEAQYNEDTGVVDLFLIVNV 64 Query: 69 VEEVEN--YTCQISLKVA-------------------------RDRDPSIDIGGVVSDPL 101 VE+ E+ Y +I+ A R + G ++ Sbjct: 65 VEDEEDAIYGREITAPDAETHGLEAEIGDELLFQVFYRAEDNERASEQDAKFGDLIDLKN 124 Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS 161 FGR+A Q+AKQVI Q+VREAERD Y E+KD+ GE+I+G V+R E G+++VDLG + Sbjct: 125 AHKRFGRIAAQTAKQVIYQRVREAERDNVYNEYKDRKGELITGIVRRFERGSIVVDLGRA 184 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ + + RE+ R GD +K+Y+ D+ R RGPQ++LSRTH + KLF EVPEIY Sbjct: 185 EAILPTRDQVPRESYRVGDSIKAYVLDIDRNARGPQIILSRTHKGLLEKLFEQEVPEIYE 244 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 IV++++ +R+PG+RAK+AV S D +DPVGACVGM+GSRVQAVV ELR EKIDIV + Sbjct: 245 KIVRIESSAREPGARAKIAVSSRDRDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPYDE 304 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A FV NA+ PA V++V++D D R+E++VP ++LSLAIG++GQNVRLASQLTGW IDI Sbjct: 305 DPARFVCNAIAPAEVSRVLIDADGHRMELVVPDDKLSLAIGKKGQNVRLASQLTGWRIDI 364 Query: 342 ITEEEDSINRQKDFNERTQFFMQAI-NVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 +E ++ +D R + + A+ +D+ +A + G+ V EL+ E+A + G Sbjct: 365 HSE-----SKIQDLERRAKEQLAAVEGMDDDLADTVFRLGWRSVGELSRAAPEELAGVPG 419 Query: 401 FDE-ETAVEIQGRAREYLEGIDITLQKKIRE------LGVSEELCSIPGIDSKIKVALGE 453 D E ++ AR +LE + + RE L E L + + I L E Sbjct: 420 IDGVEVGRQVVAGARAFLEEEKLRQEHARREADRRNSLSDRERLLEVRDMSEAIADQLAE 479 Query: 454 NG-IKTMEDLAGCSVDDL 470 + +EDLA +D L Sbjct: 480 EAQVMRVEDLARWPLDRL 497 >gi|251772259|gb|EES52829.1| transcription termination factor (NusA) [Leptospirillum ferrodiazotrophum] Length = 443 Score = 326 bits (835), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 180/424 (42%), Positives = 263/424 (62%), Gaps = 14/424 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + D + EK I ++ ++ + +I AA+ YG + +VEI+P TG+I + L Sbjct: 5 ELLSVIDQLHREKGIPQETLIEALQSAILTAAKKRYGGGDNFQVEIDPRTGEIQVLHLRR 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE V + ++SL A++ DP ++G + L DFGRVA Q+AKQVI QKVREAE Sbjct: 65 IVEHVVSPMEEVSLAEAKESDPEAEVGDEIGAYLEIDDFGRVAAQAAKQVIFQKVREAEW 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 EF + G +++G E N I+DLG ++ V+ E I RE+ GDRVK+ + Sbjct: 125 SVVAKEFGGRKGNVVAGVYIGQEKRNFIIDLGKTEAVLPFKEQIPRESFHRGDRVKALLL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 D+R RGPQ++LSRTHP F+ +LF EVPEI G++++K V RDPG RAK+AV S D + Sbjct: 185 DIRTTTRGPQLILSRTHPDFLARLFEKEVPEISEGLIEIKGVVRDPGERAKVAVLSRDPN 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 IDPVG+CVG++GSRVQA+V E+ EKIDI+ WSPD TF+ AL PA V +V D + Sbjct: 245 IDPVGSCVGVKGSRVQAIVREIHGEKIDIIDWSPDPGTFIARALSPAKVLRVATRDSEFD 304 Query: 307 RI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN------ERT 359 ++ V+V +QLSL+IGRRGQNVRLA++LTGW IDI +E++ +RQ E + Sbjct: 305 KVATVVVANQQLSLSIGRRGQNVRLAAKLTGWKIDIFSEQQYEADRQARAGGDGAEEEHS 364 Query: 360 QFFMQAINVDEI------IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + ++++ +A L A G+ VE++A I +IA + +TA ++ A Sbjct: 365 DAAPLLLGIEDLPGMGGNVADALKAAGYDTVEKIAEANIDDIAILPRLGPKTAAKLVETA 424 Query: 414 REYL 417 R++L Sbjct: 425 RDFL 428 >gi|78042921|ref|YP_360589.1| transcription elongation factor NusA [Carboxydothermus hydrogenoformans Z-2901] gi|77995036|gb|ABB13935.1| transcription termination factor NusA [Carboxydothermus hydrogenoformans Z-2901] Length = 346 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/339 (45%), Positives = 237/339 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ + +K I +V+L ++ A + YG + RV I+ TG++ ++ L Sbjct: 4 EFLQAVQEIEKQKGIPAEVLLEATEQALLSAYKKNYGINQNARVHIDRVTGEVKVYALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV++ +ISL+ AR++DP +++G V+ + P +FGR+A Q+AKQV+IQ++REAER Sbjct: 64 VVEEVKDPRLEISLEEAREKDPRLNLGDVLEIEVTPRNFGRIAAQNAKQVVIQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ Y EF + G+II+G ++RV+ NV VDLG ++ ++ E I EN + GDR+K+Y+ Sbjct: 124 NQIYEEFSSREGDIITGIIRRVDQKNVYVDLGKTEAILPPQEQIPGENYKFGDRIKAYLV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GP ++LSRTHP + +L +E+PE+Y+G V++K+++R+ GSR+K+AV+S D + Sbjct: 184 EVKKTSKGPNIILSRTHPGLLKRLLELEIPELYDGTVELKSIAREAGSRSKIAVYSKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG +G R++ +V EL EKID+V WSPD A F+ NAL PA VT V + ED Sbjct: 244 VDPIGACVGNKGLRIKNIVEELNGEKIDVVKWSPDPAKFIANALSPAKVTSVEVFEDEKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|238020478|ref|ZP_04600904.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147] gi|237867458|gb|EEP68464.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147] Length = 500 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/472 (39%), Positives = 296/472 (62%), Gaps = 11/472 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK++ ++V + ++ AA+ D+ + I+ ETGD R Sbjct: 4 EILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTIRKW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE++ +YT + +++ ++ P I I G + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVEDL-DYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +R+AER++ F + I++GTVKR+E ++V+L D +I R++ + REN R GD Sbjct: 123 IRDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRGGD 182 Query: 181 RVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+++ + + G QVLLSRT P F+ +LF EVPEI +G++++K V+RDPG RAK+ Sbjct: 183 RIRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRAKI 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++ Sbjct: 243 AVLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRI 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+D+++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E + Sbjct: 303 VIDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAAAR 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F++ + V E IA LV EGF VEE+A V SE+ +EGFD E A ++ +ARE + Sbjct: 363 NLFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVVLK 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + K+ E + E+L ++ G+D + L E I + +DLA S+ +L+ Sbjct: 423 AAEEAEAKLNE--IDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELI 472 >gi|116515165|ref|YP_802794.1| NusA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257019|gb|ABJ90701.1| transcription pausing L factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 495 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 181/464 (39%), Positives = 277/464 (59%), Gaps = 1/464 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV++EKSI R+ + + +++ A + Y +IRV IN TG + +R Sbjct: 4 EILSVVDAVSHEKSIPREKIFQALESALEIATKKKYNQDINIRVCINRSTGSFNTYRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV V N T +I+L+ AR + I + + D + + F R+A Q AKQVIIQKVREAE+ Sbjct: 64 VVNNVFNPTKEITLEAARFENKKIQLCDYIEDCIDSVTFDRIATQIAKQVIIQKVREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F K G+II G VK++ +I+D+GN+ +G+I R++ + REN R DRV+ + Sbjct: 124 EIILNKFDKKKGQIIIGIVKKISRDYIILDVGNNIEGIIMREDMLPRENFRINDRVRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y++ E++G Q+ +SR+ +++LF +EVPEI +++KA++RDPG R+K+AV + D Sbjct: 184 YNISYEKQGAQLFISRSKSDMLIELFRIEVPEIREKFIEIKAIARDPGLRSKIAVTTYDE 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRGSRVQAV EL E+IDI++W + FVIN++ PA V+ + LD Sbjct: 244 RIDPVGACVGMRGSRVQAVSNELCGERIDIILWDNNPKKFVINSMAPADVSSIFLDNTNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 I + V L+ AIGR GQNVRLASQLTGW ++IIT ++ N Sbjct: 304 VINIEVKLCNLAQAIGRNGQNVRLASQLTGWELNIITSNPIIKIKKSKKNNFFDILKNKF 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 N E L++ GF+ ++ +A I+++ SI+G + + +Q +A LE K Sbjct: 364 NFTENDILLVIHSGFSSIKSIAYASINQLLSIKGIKTDVVLNMQKKAIFILENDKKKSIK 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ ++ E ++ I+ I L E I T+E LA S+DDL Sbjct: 424 IYKKKYLNSEFANLKNINKFIIQQLIEKKICTLEHLAEQSIDDL 467 >gi|261883881|ref|ZP_06007920.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 307 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 159/266 (59%), Positives = 205/266 (77%) Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 ACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVLDED RIEV+V Sbjct: 1 ACVGMRGSRVQAVVFELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVLDEDAERIEVVV 60 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 P +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ FM+A+NVDE++ Sbjct: 61 PNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNLFMEALNVDEMV 120 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432 +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ + +ELG Sbjct: 121 GQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEAEQDARRKELG 180 Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 V++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ G L+ Sbjct: 181 VADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTINHSGVLTPFD 240 Query: 493 TPKDQVESMIIHARYKMGWIEKEKVA 518 + E M++ AR K WI ++++A Sbjct: 241 LSRVDAEHMVLAARLKACWITEQELA 266 >gi|320354998|ref|YP_004196337.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032] gi|320123500|gb|ADW19046.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032] Length = 451 Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 178/420 (42%), Positives = 277/420 (65%), Gaps = 14/420 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV A L+ +I D + +K IDR +++ + ++++ A R YGT +I V+ N + G++ Sbjct: 1 MVGAENLK--RIVDQICRDKGIDRALLIDAIEEAVRSAVRKKYGTRREIEVQFNEDLGEV 58 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVII 119 +F+ VV+EV + +ISL+ AR DP I++ + + + + D GR+A QSAKQVII Sbjct: 59 EVFQYRTVVDEVYDEETEISLEEARRLDPEIELDDDLGEKMDNIADLGRIAAQSAKQVII 118 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 ++R+AERD Y F+D+ G I++G V+R E G++I++LG +D V+ R+ I + + + G Sbjct: 119 HRMRDAERDVIYEMFRDREGTIVNGIVQRFERGDMIINLGRTDAVLPREGQIPKRSYKQG 178 Query: 180 DRVKSYIYDVRREQR-----GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 DR+++Y+ +VRR+ R Q++LSRT +F++KLF MEVPEI GIV++ SR+PG Sbjct: 179 DRIRAYLQEVRRDTREGKFRDSQLILSRTCNEFLIKLFEMEVPEIAEGIVKIMGASREPG 238 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 RAK+AV S +S +DPVGACVG++GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA Sbjct: 239 FRAKIAVSSIESDVDPVGACVGLKGSRVQNVVQELQGERIDIVPWSPDPARYVCNALAPA 298 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+ V+++++ + V+VP +QLSLAIGR+GQNVRLAS+L GW ID+ ++ +R + Sbjct: 299 EVSMVIVEDERKALLVVVPDDQLSLAIGRQGQNVRLASRLLGWKIDVKSQ-----SRYAN 353 Query: 355 FNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + A++ VDE +A L A G LA + I ++ ++ D++ A +Q A Sbjct: 354 MDNTEYRSLLAVDGVDENLADRLFAAGITSAPLLAAMDIEQLMALARIDQDKAQGMQKAA 413 >gi|260893511|ref|YP_003239608.1| NusA antitermination factor [Ammonifex degensii KC4] gi|260865652|gb|ACX52758.1| NusA antitermination factor [Ammonifex degensii KC4] Length = 365 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 164/339 (48%), Positives = 230/339 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ + E+ + +V+LSV+ ++ A R +GT + RVEI+ TG+ + Sbjct: 4 EFLQALRDLERERGLKTEVLLSVIEAALLSAYRRNFGTAQNARVEIDRTTGECRVLAQRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV++ +ISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q+++EAER Sbjct: 64 VVEEVKDPRTEISLAEAREIDPRYQVGDVVEIEVTPRDFGRIAAQTAKQVVMQRIKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y F + G+I++GTV R + NV +DLG ++ ++ E I E R GDRV++YI Sbjct: 124 NMIYEAFAGREGDIVTGTVHRADKQNVYLDLGKTEAILPAAEQIPGERYRQGDRVRAYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VRR +GPQ++LSRTHP F+ +L +EVPE+ G V++K + R+PGSR+K+AV+S D Sbjct: 184 EVRRTPKGPQIILSRTHPGFLRRLLELEVPELQEGTVELKNLVREPGSRSKVAVYSRDPH 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RGSR+QAVV ELR EKID+V W PD + F+ AL PA VT V + E+ Sbjct: 244 VDPVGACVGPRGSRIQAVVNELRGEKIDVVRWDPDPSRFIAEALSPAKVTAVEIWEEEKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 ARVIVPDNQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|118602111|ref|YP_903326.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567050|gb|ABL01855.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 491 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 192/512 (37%), Positives = 296/512 (57%), Gaps = 32/512 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + +A++ EK+I ++ VL + +++ A + D VEIN +TG+ FR Sbjct: 5 ELFLMVEAISNEKNISKEEVLESLEEALAIATKKRNNI--DAYVEINRQTGEFLTFRQWM 62 Query: 68 VVEEVENYT------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + E + L V + + V P+ FGR+A Q KQVI+QK Sbjct: 63 VVADGETFVDDDGTEFDSELHVYAKDASGVAVDDYVRKPIETQKFGRIAAQIVKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER+ ++ ++GE++ TVKRV+ GNV VD G DG+I + + I E++R D Sbjct: 123 VREAEREVIVNDYSSRIGEVVMVTVKRVDRGNVYVDTGGGVDGMIPKFDLIPNESVRKND 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++YI +V+ RG Q+ LSR+ P+ M++LF MEVPEI G++++ SRDPG R+KLA Sbjct: 183 RLRAYIKEVKPSVRGAQIFLSRSMPEMMIELFKMEVPEISEGVIEIMGGSRDPGLRSKLA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ ++ Sbjct: 243 VRAKDRRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDHAQFVINAMAPAQVSSII 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +QL+LAIGR GQN++LAS+LTGW +++++ + + ++ + + Sbjct: 303 VDEDKHSMDIAVEDDQLALAIGRGGQNIKLASRLTGWRLNVMSTTQADEKQAQETLKISD 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + VD +A +L+ EGF V EL + +IE FD E+Q RA Sbjct: 363 KLADQLGVDSEVAGVLIEEGFGSVGELVDADAQVLENIEEFDASMVEELQERAS------ 416 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D L + + + SE L S+ G+ + AL E I T++DLA S+DDLL + Sbjct: 417 DAQLVQALGDAEASELLMSVEGVGEDLASALIEADIVTVDDLAELSIDDLL--------D 468 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 I+ D ++S S+I+ AR GW Sbjct: 469 IQNMDTEIAS---------SVIMIARENEGWF 491 >gi|283850804|ref|ZP_06368090.1| NusA antitermination factor [Desulfovibrio sp. FW1012B] gi|283573727|gb|EFC21701.1| NusA antitermination factor [Desulfovibrio sp. FW1012B] Length = 496 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 171/396 (43%), Positives = 262/396 (66%), Gaps = 7/396 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL--FRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I + F++ Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + ++V + +I L AR DP++ + + L D GR+A QSAKQVIIQ++R+A Sbjct: 63 VVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV++Y Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGRTEALLPKEEQIPRERYKRGDRVQAY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S D Sbjct: 183 IIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVISKD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL PA VT++ +DED Sbjct: 243 RDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDEDD 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE +R ++ N +F Q Sbjct: 303 KALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTE-----SRFREVNASKKFLEQL 357 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +V EI +++ GF +E+LA I +I G Sbjct: 358 ASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGM 393 >gi|93004904|ref|YP_579341.1| transcription elongation factor NusA [Psychrobacter cryohalolentis K5] gi|92392582|gb|ABE73857.1| NusA antitermination factor [Psychrobacter cryohalolentis K5] Length = 494 Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 188/473 (39%), Positives = 290/473 (61%), Gaps = 17/473 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADS-IQKAARSLYGTMSDI--RVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + D+ + + +Y ++ RV I+ TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRTTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + SI G + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAITDLDQEEWSI--GDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER+ F+ +VGE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVIVP-KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE +Q+ NE Sbjct: 302 DEDTQTADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEE---YQQRQANESKA 358 Query: 361 F---FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F F + + VD+ +A LV GF +EE+A V + IEG D+E IQ RA+E + Sbjct: 359 FIELFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDEAIDMIQERAKEVV 418 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ Q+ ++E S+EL + G+ + + I T++DLA +V DL Sbjct: 419 IADELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDL 469 >gi|303248242|ref|ZP_07334505.1| transcription termination factor NusA [Desulfovibrio fructosovorans JJ] gi|302490380|gb|EFL50291.1| transcription termination factor NusA [Desulfovibrio fructosovorans JJ] Length = 478 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 170/396 (42%), Positives = 262/396 (66%), Gaps = 7/396 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL--FRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I + F++ Sbjct: 3 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + ++V + +I L AR DP++ + + L + GR+A QSAKQVIIQ++R+A Sbjct: 63 VVEDDDVADPAAEICLSDARAIDPNVALDDEMGFKLTVENLGRIAAQSAKQVIIQRMRDA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV++Y Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQAY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S D Sbjct: 183 IIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVVSKD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL P+ VT++ +DED Sbjct: 243 RDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPSRVTRISVDEDE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE +R ++ N +F Q Sbjct: 303 KALEVVVSDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTE-----SRFREVNASKKFLEQL 357 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +V EI ++A GF +E+LA I +I G Sbjct: 358 ASVAEIPVDNILAAGFESMEQLAEAPDEAIDAISGM 393 >gi|323701863|ref|ZP_08113533.1| transcription termination factor NusA [Desulfotomaculum nigrificans DSM 574] gi|323533167|gb|EGB23036.1| transcription termination factor NusA [Desulfotomaculum nigrificans DSM 574] Length = 386 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 155/339 (45%), Positives = 234/339 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E L+ + EK I DV+L + ++ A + +G++ + RV I+ TGD ++ Sbjct: 4 EFLEALKDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRNTGDFKVYSQRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL+ AR DP ++G VV + + P +FGR+A Q+AKQV++Q++REAER Sbjct: 64 VVEEVEDDRLEISLEDARKIDPRFNLGDVVENEVTPRNFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF ++ G+I++G V+R+E NV ++LG ++ ++ E + E RPGDR+K+YI Sbjct: 124 NIIFEEFANREGDILTGIVQRIENKNVFIELGKTEAILTPSEQMPGEEYRPGDRLKTYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ +GPQ+L+SRTHP + +L MEVPE+Y G++++K+++R+ G R+K+AV+S D + Sbjct: 184 EVRKTTKGPQILVSRTHPGLLKRLLEMEVPELYEGVIELKSIAREAGYRSKIAVYSKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V+EL EKIDIV W D + FV ++L PA V V + ED Sbjct: 244 VDPVGACVGPKGMRVQNIVSELNGEKIDIVKWDQDPSKFVASSLSPAKVVAVEVWEDEKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|269469301|gb|EEZ80807.1| transcription elongation factor [uncultured SUP05 cluster bacterium] Length = 390 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/410 (43%), Positives = 262/410 (63%), Gaps = 25/410 (6%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 +FGR+A Q KQVIIQKVREAER+ ++ +VGE+I TVKRV+ GNV VD+G DG+ Sbjct: 5 EFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMGGVDGM 64 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 I + + I E+ R DR+++YI DV+ RG Q+ LSRT P+ M++LF MEVPEI G++ Sbjct: 65 ISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEISEGVI 124 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++ +RDPG R+KLAV S D +DP+G+C+GMRGSRVQAV EL E++DI++W D A Sbjct: 125 EIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILWDEDPA 184 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FVINA+ PA V+ +V+DED +++ V +QL+LAIGR GQN++LAS+LTGW +++++ Sbjct: 185 QFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKLNVMSI 244 Query: 345 EEDSINRQKDFNER-TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E S ++Q + N++ + + + VD +A +L+ EGF ++E+A + SIE FD Sbjct: 245 NE-SEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIEEFDV 303 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 E+Q RA D L + + + SE L + G+D + AL E I T++DLA Sbjct: 304 SMVEELQERAS------DAQLVQALGDAESSEVLMGVEGMDEDLVQALIEAEIATVDDLA 357 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 S+D+LL +I++ D K++ SMI+ AR GW + Sbjct: 358 ELSIDELL--------DIQEMD---------KEKASSMIMTARENEGWFD 390 >gi|218288337|ref|ZP_03492636.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|258511413|ref|YP_003184847.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241696|gb|EED08869.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|257478139|gb|ACV58458.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 373 Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 163/360 (45%), Positives = 244/360 (67%), Gaps = 4/360 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ L+ D +A EK ID++V+L + ++ + R + + +++RVE+ +TG++ ++ Sbjct: 3 VDFLEALDQLAREKGIDKEVLLEAIEAALIASYRRNFHSAANVRVEVKRDTGEVHVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE ++ +ISL ARD +PS IG VV + P DFGR+A Q+AKQV++Q+V+EAE Sbjct: 63 TVVEEPKDTRLEISLDAARDINPSYQIGDVVEIEVTPRDFGRIAAQAAKQVVMQRVKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y +F D+ E++SG V R+E +DLG+++ ++ + E ++ + L+ G R+K +I Sbjct: 123 RSVIYSKFADREEEVVSGIVSRLEPRVAYIDLGDTEAILPQSEQMASDKLQVGKRLKVFI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R +GPQ+++SRTHP + +LF +EVPEIY GIV++KAV+R+ GSR+K+AV S + Sbjct: 183 ARVERTSKGPQIVVSRTHPGLLRRLFELEVPEIYEGIVEIKAVAREAGSRSKIAVHSRNP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DP+GACVG RGSRVQA+V EL EK+DIV WS D ATFV NAL PA V V + ED Sbjct: 243 EVDPIGACVGARGSRVQAIVNELNGEKVDIVEWSEDPATFVANALSPAKVIDVHIYEDER 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS----INRQKDFNERTQFF 362 +VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +++ +D NE F Sbjct: 303 VARTVVPDYQLSLAIGKEGQNARLAARLTGWKIDIKSESQMASHSLLDQLEDTNEEEPEF 362 >gi|239907795|ref|YP_002954536.1| transcription elongation protein NusA [Desulfovibrio magneticus RS-1] gi|239797661|dbj|BAH76650.1| transcription elongation protein NusA [Desulfovibrio magneticus RS-1] Length = 463 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 169/396 (42%), Positives = 264/396 (66%), Gaps = 7/396 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL--FRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I + F++ Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + ++V + +I L A+ DP++ + + L D GR+A QSAKQVIIQ++R+A Sbjct: 63 VVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+++ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGRTEALLPKEEQIPRERYKRGDRVQAF 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V RGPQ+++SRTH +M LF EVPE+ +G V++ AV+RDPGSRAK+AV S D Sbjct: 183 IIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVISKD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ A++ NAL P+ VT++ +DED Sbjct: 243 RDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDEDE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+V +QL+LAIGR+GQNV+LA++L GW IDI+TE +R ++ N +F Q Sbjct: 303 KSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTE-----SRFREANASKKFLEQL 357 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +V EI ++A GF +E+LA I +I G Sbjct: 358 ASVAEIHVDNIIAAGFVSMEQLAEADDEAIDAIVGM 393 >gi|71064649|ref|YP_263376.1| transcription elongation factor NusA [Psychrobacter arcticus 273-4] gi|71037634|gb|AAZ17942.1| NusA antitermination factor [Psychrobacter arcticus 273-4] Length = 494 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 188/473 (39%), Positives = 291/473 (61%), Gaps = 17/473 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADS-IQKAARSLYGTMSDI--RVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + D+ + + +Y ++ RV I+ TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRATGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ D+D IG V + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAI-TDLDQD-EWSIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER+ F+ +VGE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I++L PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISSLEPADVSSIIL 301 Query: 302 DEDVGRIEVIVP-KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE +Q+ NE Sbjct: 302 DEDTQSADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEE---YQQRQANESKA 358 Query: 361 F---FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F F + + VD+ +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 359 FIELFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDDAIDMIQERAKEVV 418 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ Q+ ++E S+EL + G+ + + I T++DLA +V DL Sbjct: 419 IADELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDL 469 >gi|148244225|ref|YP_001218919.1| transcription termination factor NusA [Candidatus Vesicomyosocius okutanii HA] gi|146326052|dbj|BAF61195.1| transcription termination factor NusA [Candidatus Vesicomyosocius okutanii HA] Length = 491 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 188/512 (36%), Positives = 299/512 (58%), Gaps = 31/512 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + +A++ EK+I ++ VL + ++ A + D VEIN +TG+ FR Sbjct: 5 ELFLMVEAISNEKNISKEEVLESLEKALAIATKKRNNI--DAYVEINRQTGEFLTFRQWM 62 Query: 68 VVEEVENYT------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + E + + L + + + + P+ +FGR+A Q KQVIIQK Sbjct: 63 VVADGELFVDDDGTEFDLELHIYEKDTDGLVVDDYMRKPIETQEFGRIAAQIVKQVIIQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER+ ++ ++GE+I TVKRV+ GN+ VD+G DG+I + + I E++R DR Sbjct: 123 VREAEREVIVNDYSSRIGEVIMVTVKRVDRGNIYVDMGGVDGMIPKFDLIPNESVRKNDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI +V+ RG Q+ LSR+ + M++LF MEVPEI G++++ SRDPG R+KLAV Sbjct: 183 LRAYIKEVKSSIRGVQIFLSRSVSEMMIELFKMEVPEISAGVIEIMGGSRDPGLRSKLAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ +++ Sbjct: 243 RAKDKRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDPAQFVINAMAPAEVSSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V EQL+LAIGR GQN++LAS+LTGW +++++ + + ++ + + Sbjct: 303 DENKHSMDIAVEDEQLALAIGRGGQNIKLASRLTGWKLNVMSTIQADEEQVQEMQKISDK 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 + VD +A +L+ EGF V+EL + +IE FD E+Q RA D Sbjct: 363 LADQLGVDSEVAGVLIEEGFDSVDELVDADTQVLGNIEEFDASMVEELQERAS------D 416 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + + + SE L S+ G++ + L E I T++DLA S+D+LL +I Sbjct: 417 AQLVQALGDAEASEILMSVEGVNEDLASVLIEVDIFTVDDLAELSIDELL--------DI 468 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + D ++S S+I+ AR GW + Sbjct: 469 QDMDIEIAS---------SIIMTARENEGWFD 491 >gi|149925033|ref|ZP_01913351.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1] gi|149814097|gb|EDM73723.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1] Length = 461 Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 186/441 (42%), Positives = 276/441 (62%), Gaps = 34/441 (7%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 + L + DAV EK+I RDV++ + ++ AA+ ++ +I + ETG+++LF++L Sbjct: 5 VNLSTVIDAVCQEKNISRDVLVDTVEQAVATAAKRVFAD-REIEASFDLETGNVNLFQVL 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVV--------------------SDPLPPMD- 105 VVE VE ++S+ AR +IG + +P + Sbjct: 64 YVVETVELPMREMSIDQARRSGLEAEIGDELLFQIFYLEDDRKQAEDQAKQYPEIPALQK 123 Query: 106 ----FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI--VDLG 159 FGR+A Q+AKQVIIQ+VREAER+ Y +KDK GE+++G V+R E G+++ VD G Sbjct: 124 VNTAFGRIAAQTAKQVIIQRVREAERENLYDRYKDKKGELMTGIVRRFERGSIVVEVDNG 183 Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219 ++ ++ + + RE+LRPGDR+ +++ DV + RGPQ++LSRTH + KLF EVPEI Sbjct: 184 RAEAILPSRDQVPRESLRPGDRIVAFVKDVDKSARGPQIILSRTHKGLVEKLFEHEVPEI 243 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 + GIV+++A +R+PG+R+K+AV S D +DPVGACVGMRGSRVQAVV ELR EKIDIV + Sbjct: 244 FEGIVRIEACAREPGARSKIAVSSRDRDVDPVGACVGMRGSRVQAVVQELRGEKIDIVPF 303 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV NA++PA V++V++D + +E++VP ++LSLAIG+RGQNVRLAS+LTGW I Sbjct: 304 DEDPARFVCNAIQPAQVSRVLIDAERHTMELVVPDDKLSLAIGKRGQNVRLASRLTGWRI 363 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAI-NVDEIIAHLLVAEGFADVEELACVKISEIASI 398 DI S ++ + R+Q + AI V +A L G+ + +LA + E+AS+ Sbjct: 364 DI-----HSRSKIRQMERRSQAEIAAIPGVGHELAAQLFDLGWRTLRDLAVANMEELASV 418 Query: 399 EGFDEETAVEIQGRAREYLEG 419 G D + A I A E G Sbjct: 419 IGGDLDAADAIIDTANEAASG 439 >gi|304316865|ref|YP_003852010.1| NusA antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778367|gb|ADL68926.1| NusA antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 345 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 154/337 (45%), Positives = 227/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ D + +K I +D + + ++ A + YGT +++V+++ ETGD+ ++ Sbjct: 4 EFIEALDQICKDKGIPKDTMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N +ISL+ A+ +G VV + P FGR+A Q+AKQV++Q++REAER Sbjct: 64 VVENVYNDLFEISLEDAQKLSKKYQVGDVVDIEVTPKSFGRIAAQNAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F K EI++G V+R+E NV+VDLG ++ + +E I E GDR+K YI Sbjct: 124 GIVYEDFLSKESEIVTGIVERIERKNVLVDLGKAEATLTPNEQIPNETYNHGDRIKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D + Sbjct: 184 EVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYTKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE Sbjct: 244 VDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKEKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 304 ARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSE 340 >gi|125973509|ref|YP_001037419.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405] gi|256003327|ref|ZP_05428318.1| NusA antitermination factor [Clostridium thermocellum DSM 2360] gi|281417712|ref|ZP_06248732.1| NusA antitermination factor [Clostridium thermocellum JW20] gi|125713734|gb|ABN52226.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405] gi|255992617|gb|EEU02708.1| NusA antitermination factor [Clostridium thermocellum DSM 2360] gi|281409114|gb|EFB39372.1| NusA antitermination factor [Clostridium thermocellum JW20] gi|316940252|gb|ADU74286.1| NusA antitermination factor [Clostridium thermocellum DSM 1313] Length = 404 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 150/339 (44%), Positives = 235/339 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ + + EK ID+D ++ + ++ A + +G+ +++V I+ ETGD ++ L + Sbjct: 4 DLIHALEQLEKEKGIDKDTLIEAIEAALISAYKRSFGSSQNVKVSIDRETGDFKVYALKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +N +IS++ A+ +P + +V + P FGR+A Q+AKQV++Q++REAER Sbjct: 64 VTANPQNELLEISIENAKKINPDFEENDIVEIEVTPRKFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +K GEI++G V+R+E NVI+DLG ++ ++ E I E + DR+K+YI Sbjct: 124 GIIYNEFSNKEGEIVTGVVQRIERKNVIIDLGKAEAILAPSEQIPGEEYKFNDRIKTYII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SRTHP + +LF +EVPEIY GIV++K+++R+PGSR K+AV+S D + Sbjct: 184 EVKKTTKGPQILVSRTHPGIIKRLFELEVPEIYEGIVEIKSIAREPGSRTKIAVYSKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQAVV ELR EKIDI+ WS + ++ ++L PA V +V ++E+ Sbjct: 244 VDPVGACVGQKGTRVQAVVDELRGEKIDIIKWSSNPEEYISSSLSPAKVIRVDINEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 AKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [NC10 bacterium 'Dutch sediment'] Length = 433 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 157/335 (46%), Positives = 230/335 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++LLQ+ + V EK ID V++ ++ +I A+R G D+RVE + + L+ + Sbjct: 3 IDLLQVIEQVGREKEIDSAVLIEAVSAAILSASRKTLGAALDLRVEFDQRSRCFMLYAVR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE+V N +I++ A+ +P +G L +FGR+A Q+AKQVIIQ+V+EAE Sbjct: 63 KVVEQVVNPHVEIAIDEAQQLNPEAQLGDETKTELKAKEFGRIAAQTAKQVIIQRVKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + FK +VGE++ G V+RV GNVIV+LG ++ ++ E + RE+ R GDR+++Y+ Sbjct: 123 RESVFQAFKARVGELVGGVVQRVAKGNVIVNLGKAEAILPPREQLPREDYRVGDRIRAYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV++ RG Q++LSRTHP + KL +EVPEIY GIV++KAVSRD G RAK+AV S DS Sbjct: 183 LDVKKLPRGSQIVLSRTHPGLLAKLLEIEVPEIYEGIVEIKAVSRDAGERAKVAVASRDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG RGSR+QA+V EL EKID++ W D A+FV +AL PA + V + ++ Sbjct: 243 NVDPVGACVGYRGSRIQAIVRELMGEKIDVIAWKDDPASFVKSALAPADIESVEVVQETH 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V+V QLSLAIG+RGQN RLA++L GW +D+ Sbjct: 303 TLHVLVADGQLSLAIGKRGQNARLAAKLLGWKVDV 337 >gi|291279908|ref|YP_003496743.1| N utilization substance protein A [Deferribacter desulfuricans SSM1] gi|290754610|dbj|BAI80987.1| N utilization substance protein A [Deferribacter desulfuricans SSM1] Length = 443 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 171/419 (40%), Positives = 270/419 (64%), Gaps = 9/419 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++AD + EK + ++++ + DSI+ A YG ++D V ++ E G I + E Sbjct: 3 ELAKVADEIGKEKGLSKELLKEALEDSIKAAVIRKYGRLTDPEVTVDIERGKIDIKVPKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VEN +I L+ A+ P ++G V+ P+ + GR A AKQ +++K+REAE+ Sbjct: 63 VVESVENKKYEILLEDAKKIKPDAELGDVIMVPISFQELGRQAATVAKQRMVEKIREAEK 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF++K+G+I++G V + + ++IV +G ++ + + E I + GD V++ + Sbjct: 123 QVVYDEFQNKIGQIVTGVVLKSDKDSMIVSIGKTEAFMPKREIIPGDYYDRGDYVRALLL 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 ++R + PQ++LSRTHP F+ KLF +E+PE++ GI++VKAV+R+PG RAK+AV+S +S+ Sbjct: 183 EIRVIRGWPQLILSRTHPDFLKKLFEVEIPEVFEGIIEVKAVAREPGDRAKVAVYSKNSN 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGAC+G++G+R+ A+ ELR EKID++ WSPD FV NAL PA V + ED Sbjct: 243 IDPVGACIGLKGTRINAISNELRGEKIDVIEWSPDPVKFVCNALSPADVILTNIFEDEKT 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ------- 360 IEV+VP +QLSLAIG+RGQNVRLA+ LTGW +D++ E E +I R++ E+ + Sbjct: 303 IEVVVPDDQLSLAIGKRGQNVRLAAMLTGWRLDVLKESEYNIIRKERLQEQEEELKEFYE 362 Query: 361 -FFMQAINV-DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + ++ I+V DE + L+ G DVE+L+ + E+ G +E+ AV I A +YL Sbjct: 363 IYNLENIDVLDENMISKLIEHGIDDVEKLSTASVDEVVMALGVNEDQAVVIINSAIDYL 421 >gi|153873979|ref|ZP_02002372.1| Transcription termination factor NusA [Beggiatoa sp. PS] gi|152069556|gb|EDN67627.1| Transcription termination factor NusA [Beggiatoa sp. PS] Length = 355 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 158/319 (49%), Positives = 228/319 (71%), Gaps = 1/319 (0%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR 177 +QK+REAER + ++D+ GE+ISG VKRVE GNVI+DLG N++ +I RDE I RE++R Sbjct: 1 MQKIREAERAQIIEAYQDRQGELISGVVKRVERGNVILDLGGNAEALITRDEMIPRESVR 60 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDR++ Y+Y VR E RGPQ+ LSRT P+ ++KLF+MEVPEI +++ +RDPG RA Sbjct: 61 PGDRLRGYLYSVRPESRGPQIFLSRTAPELLIKLFNMEVPEIGEHFLEIVDAARDPGLRA 120 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV D IDPVGACVGMRGSRVQA+ EL E++DI+V+ + A FV+NA+ PA V Sbjct: 121 KIAVKPKDPRIDPVGACVGMRGSRVQAISNELAGERVDIIVFDENPAQFVMNAMAPADVV 180 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++DE+ ++V V +EQLS AIGR GQNVRLASQLT WT++++T+++ +++ Sbjct: 181 SIIVDEETHSMDVAVQEEQLSQAIGRNGQNVRLASQLTSWTLNVMTDKQAREKHEQEALV 240 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM + VDE IA++LV EGF+ +EE+A V ++E+ IE FDE E++ RA++ L Sbjct: 241 MLELFMDELEVDEEIANILVQEGFSSIEEVAYVPLTEMLQIEAFDENLVKELRSRAKDAL 300 Query: 418 EGIDITLQKKIRELGVSEE 436 I +++ + +SEE Sbjct: 301 LTRAIATEEQDESILLSEE 319 >gi|238927232|ref|ZP_04658992.1| transcription elongation factor NusA [Selenomonas flueggei ATCC 43531] gi|238884907|gb|EEQ48545.1| transcription elongation factor NusA [Selenomonas flueggei ATCC 43531] Length = 379 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 158/350 (45%), Positives = 232/350 (66%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F Sbjct: 13 NGKEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFA 72 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV+EVE+ +ISL AR +P +G VV + P +FGR+A Q+AKQV++Q++RE Sbjct: 73 IKTVVDEVESDVTEISLARARAINPDYTVGDVVEIEMTPANFGRIAAQTAKQVVMQRLRE 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y E+ ++ EI++G V+R+E NV VD+G ++ V+ E + E GD V++ Sbjct: 133 AERGIVYEEYMNRSSEIVTGIVQRIEGHNVFVDIGRAEAVLMATEQLPTETYNYGDTVRA 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS Sbjct: 193 YIIEVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSS 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 253 EERVDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEA 312 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D Sbjct: 313 EKISRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAREEEQAD 362 >gi|302392348|ref|YP_003828168.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501] gi|302204425|gb|ADL13103.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501] Length = 376 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 160/341 (46%), Positives = 242/341 (70%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL+Q + + +K+I ++++L + +++ A + +G+ ++ +EI+ E G+++++ Sbjct: 2 NIELIQALEDIEKDKNIPKEMLLDALKAALESAYKKNFGSKQNVEIEIDEENGEVNVYSN 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV+N ++SL+ AR+ DP+ + G VVS + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 REVVKEVDNPNLEMSLEEAREIDPNYEAGDVVSVEVTPANFGRIAAQTAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF D EII+G ++R NVIVDLG ++ ++ E I EN P +R+K Y Sbjct: 122 ERDIIYEEFADMEDEIITGIIQRNHKKNVIVDLGRTEAILIPPEQIPNENYEPSERIKIY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +L+SRTHP + +LF +EVPEI++G+V++KAV+R+ G R+K+AV S++ Sbjct: 182 IVEVKQTTKGPNILVSRTHPGLLKRLFELEVPEIHDGVVKIKAVAREAGFRSKIAVDSTE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DP+G+CVG G RVQAVV EL EKIDIV WS D A F+ NAL PA VT V +DE+ Sbjct: 242 AEVDPIGSCVGPNGMRVQAVVDELNGEKIDIVNWSEDPAEFIANALSPAEVTGVEVDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E Sbjct: 302 QVAVVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESE 342 >gi|68172039|ref|ZP_00545325.1| Transcription termination factor NusA, C-terminal duplication [Ehrlichia chaffeensis str. Sapulpa] gi|67998537|gb|EAM85305.1| Transcription termination factor NusA, C-terminal duplication [Ehrlichia chaffeensis str. Sapulpa] Length = 318 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/332 (45%), Positives = 234/332 (70%), Gaps = 14/332 (4%) Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +KA++RDPGSR+K+A Sbjct: 1 RVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTIKAIARDPGSRSKVA 60 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F++NA+ PA V KV+ Sbjct: 61 VFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKFIVNAIAPAEVLKVI 120 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E +S + K+ + ++ Sbjct: 121 IDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDETESSRKAKELSAGSK 180 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A E++ RA +YL Sbjct: 181 IFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAEELKSRAADYLVRK 240 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D +++ + L V +++ +P + +AL +NGI ++ED+AG D+ Sbjct: 241 DAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLCTDEF---------- 290 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 FD + + KDQV+S+I+ +R K+GW+ Sbjct: 291 ---FD-IIPDIALTKDQVDSVILESRKKIGWL 318 >gi|323173571|gb|EFZ59200.1| transcription elongation protein nusA [Escherichia coli LT-68] Length = 381 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 164/367 (44%), Positives = 244/367 (66%), Gaps = 4/367 (1%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 +QKVREAER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN R Sbjct: 1 MQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 60 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRA Sbjct: 61 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 120 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V Sbjct: 121 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 180 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 181 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 240 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L Sbjct: 241 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 300 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 I ++ + + +++L ++ GID + L G+ T+EDLA +DDL G + Sbjct: 301 ATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 360 Query: 475 ENKGGNI 481 + K G + Sbjct: 361 DEKAGAL 367 >gi|148651972|ref|YP_001279065.1| transcription elongation factor NusA [Psychrobacter sp. PRwf-1] gi|148571056|gb|ABQ93115.1| NusA antitermination factor [Psychrobacter sp. PRwf-1] Length = 495 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 182/484 (37%), Positives = 295/484 (60%), Gaps = 14/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADS-IQKAARSLYGTMSDI--RVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + ++ + + +Y ++ RVEI+ +TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + + SI G + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDENEWSI--GDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER F+ ++GE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V R+ RG Q+LLSRT P +V L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLVALMNKEVPEINEQIIEIRDVARQPGVRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + + Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV---DDLLGWSENK 477 ++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V +D+ G E Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIEGLDEKT 479 Query: 478 GGNI 481 G + Sbjct: 480 AGEL 483 >gi|331007796|ref|ZP_08330909.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330418395|gb|EGG92948.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 336 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 160/333 (48%), Positives = 237/333 (71%), Gaps = 3/333 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK +D +V+ + ++ A + Y S I V I+ TGD FR E Sbjct: 4 EILLVAEAVSNEKGVDAEVIFEALELALATATKKRYDEDSTIDVSIDRRTGDYETFRSWE 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E + Q + + A +++ + G + + + +DFGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDDETLALLGTQFTTEEAIEQNADLVPGDIHREQVENVDFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ E++DK+GE+ISG+VK+V N+IVDLGN ++G++ R+E + RE R GDR+++ Sbjct: 124 EREQVVEEYRDKIGELISGSVKKVTRDNIIVDLGNNAEGLLPREELVGREIYRMGDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VR E RGPQ+ LSR P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 184 MLMEVRSEMRGPQLYLSRACPEMLVELFRIEVPEIAEEIIELKAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL +E+IDI++W ++A FVINA+ PA + +V+DE+ Sbjct: 244 DGRIDPVGACVGMRGARVQAVSNELANERIDIILWDDNAAQFVINAMAPAEIESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 ++V V ++ L++AIGR GQNVRLAS+LTGW Sbjct: 304 TASMDVAVAEDNLAMAIGRGGQNVRLASELTGW 336 >gi|255658253|ref|ZP_05403662.1| transcription termination factor NusA [Mitsuokella multacida DSM 20544] gi|260849564|gb|EEX69571.1| transcription termination factor NusA [Mitsuokella multacida DSM 20544] Length = 378 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 154/342 (45%), Positives = 230/342 (67%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E L + EK ID +V+ + ++ A + +G+ ++RV ++ ETG ++ Sbjct: 11 NGQEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYA 70 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VVE+ E+ +ISL AR P ++G V+ + P +FGR+A Q+AKQV++Q++RE Sbjct: 71 IKTVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIRE 130 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF + G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+ Sbjct: 131 AERGIIYEEFMSREGDILTGLVERVENHNVYIDLGKTEAVLTPAEQIPTETYAHGDRIKA 190 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V++ +GPQ+++SRTHP + +LF +EVPEI GIV++K+V+R+PG+R+K+AV+S Sbjct: 191 YVVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSK 250 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVG+CVG RG RVQ++V EL EKIDIV WS + A F+ NAL PA V V ++E Sbjct: 251 DENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNET 310 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 311 EKVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 352 >gi|134299807|ref|YP_001113303.1| transcription elongation factor NusA [Desulfotomaculum reducens MI-1] gi|134052507|gb|ABO50478.1| NusA antitermination factor [Desulfotomaculum reducens MI-1] Length = 384 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 155/337 (45%), Positives = 234/337 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E L+ + EK I DV+L + ++ A + +G++ + RV I+ +TGD ++ Sbjct: 4 EFLEALRDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRDTGDYKVYSQRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL+ AR DP ++ VV D + P +FGR+A Q+AKQV++Q++REAER Sbjct: 64 VVEEVEDDRVEISLEDARKIDPRFNLEDVVEDEVTPRNFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF ++ G+I++G V+R+E NV ++LG ++ ++ E I E+ R GDR+K+YI Sbjct: 124 NIIFEEFSNREGDILTGIVQRIENKNVFIELGKTEAILTPSEQIPNEDYRHGDRLKTYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ +GPQ+L+SRTHP + +LF +EVPE+ G+V++K+++R+ G R+K+AV+S D + Sbjct: 184 EVRKTTKGPQILVSRTHPGLLKRLFELEVPELQEGVVELKSIAREAGYRSKIAVYSKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +VTEL EKIDI+ W+ D + +V ++L PA V V + ED Sbjct: 244 IDPVGACVGPKGMRVQNIVTELNGEKIDIIKWNQDPSKYVASSLSPAKVVAVEVWEDEKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 340 >gi|332976700|gb|EGK13538.1| N utilization substance A [Psychrobacter sp. 1501(2011)] Length = 495 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/484 (37%), Positives = 295/484 (60%), Gaps = 14/484 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADS-IQKAARSLYGTMSDI--RVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + ++ + + +Y ++ RVEI+ +TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + + SI G + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDENEWSI--GDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER F+ ++GE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V R+ RG Q+LLSRT P ++ L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLIALMNKEVPEISEQIIEIRDVARQPGVRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + + Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV---DDLLGWSENK 477 ++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V +D+ G E Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIEGLDEKT 479 Query: 478 GGNI 481 G + Sbjct: 480 AGEL 483 >gi|295399850|ref|ZP_06809831.1| transcription termination factor NusA [Geobacillus thermoglucosidasius C56-YS93] gi|312111638|ref|YP_003989954.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1] gi|294978253|gb|EFG53850.1| transcription termination factor NusA [Geobacillus thermoglucosidasius C56-YS93] gi|311216739|gb|ADP75343.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1] Length = 382 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 163/339 (48%), Positives = 229/339 (67%), Gaps = 3/339 (0%) Query: 11 QIADAVA---YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 Q+ DA+A EK I ++VV+ + +I A + +G ++RV++N ETG I +F E Sbjct: 4 QLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNMETGTIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + QISL+ A+ DP+ G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVTDPRLQISLEEAQRIDPNYQSGDVVELEVTPRDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ V V LG ++G++ E + E +P DR+K YI Sbjct: 124 SVIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKTEGLLPASEQMPNETYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 244 VDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LT W IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESE 342 >gi|292669518|ref|ZP_06602944.1| transcription termination factor NusA [Selenomonas noxia ATCC 43541] gi|292648841|gb|EFF66813.1| transcription termination factor NusA [Selenomonas noxia ATCC 43541] Length = 377 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 155/339 (45%), Positives = 227/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE EN ISL AR +P +G V+ + P +FGR+A Q+AKQV++Q++REAER Sbjct: 74 VVEEAENDITDISLAQARAINPDYAVGDVIEIEMTPANFGRIAAQTAKQVVMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ +I++G V+RVE NV VD+G ++ V+ E + E GD +++YI Sbjct: 134 GIVYEEYMNRSADIVTGIVQRVEGRNVFVDIGRAEAVLMATEQMPTETYNYGDTLRAYII 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPE+ G+V++K+++R+ GSR+K+AV SS+ Sbjct: 194 EVKRTSRGPQIMLSRTHPGLLKKLFELQVPEMQEGVVEIKSIAREAGSRSKIAVASSEER 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 254 VDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVNEAEKV 313 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 314 SRVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 352 >gi|304437178|ref|ZP_07397139.1| transcription termination factor NusA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369840|gb|EFM23504.1| transcription termination factor NusA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 379 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 157/347 (45%), Positives = 230/347 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F + Sbjct: 16 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFAIKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVE+ +I L AR +P +G VV + P +FGR+A Q+AKQV++Q++REAER Sbjct: 76 VVDEVESDVTEIGLAQARAINPDYVVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ EI++G V+RVE NV VD+G ++ V+ E + E GD V++YI Sbjct: 136 GIVYEEYMNRSSEIVTGIVQRVEGHNVFVDIGRAEAVLMATEQLPNETYNYGDTVRAYII 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS+ Sbjct: 196 EVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSSEER 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 256 VDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEAEKI 315 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D Sbjct: 316 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQARETEQAD 362 >gi|332968911|gb|EGK07958.1| N utilization substance A [Kingella kingae ATCC 23330] Length = 499 Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 187/508 (36%), Positives = 314/508 (61%), Gaps = 30/508 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK++D +VV + ++ AA+ ++ V I+ ETG+ R Sbjct: 4 EILALAEALASEKNVDPNVVFEALETALGIAAKKKADREHMNLEVRIHRETGEYKTVRKW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE++ +YT + +++ ++ P I+I G + +P FGR A Q+AKQ+I+QK Sbjct: 64 LIVEDL-DYTYPELEKTIEQIQEEQPGIEIEVGDYYEEEIPNEAFGRQAAQTAKQIILQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +R+AER++ F +++ GTVKRVE ++V++ D +I R+ + REN R GD Sbjct: 123 IRDAEREQILNGFLANREDVVVGTVKRVERHGIVVEIAPKLDALIPREHMLPRENYRGGD 182 Query: 181 RVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++++ V G QV+LSR +F+ KLF EVPEI +GI++++ V+RDPG RAK+ Sbjct: 183 KIRALFLKVEEFNGGRKQVMLSRASTEFLRKLFEQEVPEIRDGILEIREVARDPGQRAKI 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++ Sbjct: 243 AVHTNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRI 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNER 358 V+++++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+TE+E + N +++ R Sbjct: 303 VINDEMQSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTEQEAEQRNAEEELALR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM + DE +A LVA F +EE+A V +S++ ++G D+ TA ++ +ARE L Sbjct: 363 -DLFMSQLGADESVALALVAAEFTSIEEVAFVPMSDLTDLDGVDDATAENLRNKAREVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ ++K+ ++++L ++ G+D + L + I +DLA S+D+L+ + Sbjct: 422 QTELEAEEKLN--SIADDLRNLDGLDDDMLRDLVDANITNRDDLAELSIDELIEIT---- 475 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHAR 506 G K++ E +I+ AR Sbjct: 476 -------------GVSKEEAEQVILTAR 490 >gi|20807843|ref|NP_623014.1| transcription elongation factor NusA [Thermoanaerobacter tengcongensis MB4] gi|20516405|gb|AAM24618.1| Transcription terminator [Thermoanaerobacter tengcongensis MB4] Length = 346 Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 153/338 (45%), Positives = 228/338 (67%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ +++ EK I ++ + + ++ A R YGT ++++ ++ ETGD+ ++ Sbjct: 4 EFIEALNSICEEKGIPKETMFEAIEAALVSAYRKNYGTAQNVKIVMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV+N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REAER Sbjct: 64 VVEEVKNDLLEISLEDARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K YI Sbjct: 124 NVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS D + Sbjct: 184 EVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFSRDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 +DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V ++DE Sbjct: 244 VDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVDEKEK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 VARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 341 >gi|282882060|ref|ZP_06290701.1| transcription termination factor NusA [Peptoniphilus lacrimalis 315-B] gi|300813713|ref|ZP_07094033.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298090|gb|EFA90545.1| transcription termination factor NusA [Peptoniphilus lacrimalis 315-B] gi|300512170|gb|EFK39350.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 430 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 149/334 (44%), Positives = 228/334 (68%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ + + EK I +D++ + ++ + + YGT ++ V+++ ETG+I LF Sbjct: 4 EFIEALNEIEKEKGISKDIIFDALEQALVSSYKKNYGTSQNVIVKMDRETGEIKLFAYKN 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEVEN +ISL+ A+ D + +G + + P +FGR+A Q+AKQV+IQ++++AER Sbjct: 64 IVEEVENPEIEISLEDAKKIDINFKLGDNYTKEIHPKNFGRIAAQTAKQVVIQRIKDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + +F K E+++G V+R +GNV VDLG ++G++ +E I E+ + GDR K + Sbjct: 124 DVIFEDFTKKERELLTGLVQRSNHGNVYVDLGKTEGILLPNEQIKGESYKHGDRYKMLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQV+LSR+HP + +LF +EVPEI GIV++ ++SR+ GSR K+AVFS D Sbjct: 184 EVKKSSKGPQVILSRSHPDLIKRLFELEVPEINEGIVEIYSISREAGSRTKIAVFSLDPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG +G RV A+V EL +EKIDIV++ D F+ N+L P+ V KV ++ED Sbjct: 244 VDPLGACVGYKGQRVNAIVDELSNEKIDIVIYQKDPQEFIANSLSPSKVEKVFINEDDKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 IVP QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 ALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDI 337 >gi|297617185|ref|YP_003702344.1| transcription termination factor NusA [Syntrophothermus lipocalidus DSM 12680] gi|297145022|gb|ADI01779.1| transcription termination factor NusA [Syntrophothermus lipocalidus DSM 12680] Length = 350 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 232/339 (68%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + E+ I ++V++ + +++ A + +G++ ++ V+++ E+G++ ++ Sbjct: 4 ELIQALGEIEKERGIPKEVLVEAIESALRTAYKKNFGSLQNVTVQMDMESGEVKVYAKKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E V++ ++ L AR+ P ++IG + + P DFGR+A Q+AKQV+IQ++REAER Sbjct: 64 VAETVKDERLEVRLAEAREIYPEVEIGDEIDVEVTPADFGRIAAQTAKQVVIQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF ++ GEI++GTV+RVE VI++LG ++ ++ + I E PG R+K+YI Sbjct: 124 SIVFNEFSNRAGEIVTGTVQRVEQKTVIINLGRTEALMGSQDQIPNEAYEPGQRIKAYIS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R +GPQ+ LSRTHP F+ +LF +EVPEIY G+V++K+++R+ GSR+K++V+S + Sbjct: 184 EVKRSAKGPQIFLSRTHPNFLKRLFELEVPEIYEGLVEIKSIAREAGSRSKISVYSRNEK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL EKIDI+ WSPD ++ NAL P+ V V E Sbjct: 244 VDPVGACVGPKGLRVQNIVRELNGEKIDIIKWSPDIEQYIANALSPSKVVSVEASESEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|225181381|ref|ZP_03734825.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225167962|gb|EEG76769.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 396 Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 157/356 (44%), Positives = 241/356 (67%), Gaps = 1/356 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E L DA+ EK + ++V+ + ++ A + + +++RV++N E+G+I ++ LE Sbjct: 4 EFLAAMDAIEKEKGVKKEVLFEAIEAALVSAYKRNFNAAANVRVQLNRESGEIKVYTRLE 63 Query: 68 VVEEVEN-YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE N +ISL+ A+ D + G +V + P +FGR+A Q+AKQV+IQ++REAE Sbjct: 64 VVEEESNDPQLEISLQDAQKIDSRYEPGEIVEKEVTPKNFGRIAAQTAKQVVIQRIREAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + E+ D+ +II+G V+R+E NVI+DLG ++ V+ E + ++ R +RVK+YI Sbjct: 124 REIVFDEYIDREEDIITGIVQRMEQKNVIMDLGKTEAVLLPTEQMPGDDYRQSERVKAYI 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+ +SRTHP + +LF +EVPEI++G V++K+V+R+ G R+KLAV+S + Sbjct: 184 TEVKKTSKGPQIFVSRTHPGLLKRLFELEVPEIFDGTVEIKSVAREAGYRSKLAVYSKNK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG +G+RVQA+VTELR EKIDIV W D FV N+L PA V V L ++ Sbjct: 244 DVDPVGACVGPKGARVQAIVTELRGEKIDIVKWDEDPVIFVANSLSPAKVMSVSLHQEQK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + ER++ F Sbjct: 304 VASVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDITSESQAAERQGLPVEERSELF 359 >gi|294788742|ref|ZP_06753983.1| transcription termination/antitermination protein NusA [Simonsiella muelleri ATCC 29453] gi|294483224|gb|EFG30910.1| transcription termination/antitermination protein NusA [Simonsiella muelleri ATCC 29453] Length = 500 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 194/520 (37%), Positives = 314/520 (60%), Gaps = 32/520 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK+++ +VV + ++ AA+ D+ V I+ +TG+ R Sbjct: 4 EILALAEALASEKNVEPNVVFEALETALGIAAKKKADREHMDLEVRIHRDTGEYRTVRKW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE++ +YT + +++ ++ P IDI G + +P FGR A Q+AKQ+I+QK Sbjct: 64 LIVEDL-DYTYPELEKTIEQIQEEIPGIDIQVGDYYEEDIPNEAFGRQAAQTAKQIILQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +R+AER++ F +I+ GTVKRVE ++V++ D +I R++ + REN R GD Sbjct: 123 IRDAEREQILNAFLATREDIVVGTVKRVERHGIVVEIAPKLDALIPREQALPRENYRSGD 182 Query: 181 RVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++++ + V G QV+LSR+ +F+ KLF EVPEI +G+++++ VSRDPG RAK+ Sbjct: 183 KIRALFWKVEELNGGRKQVMLSRSSGEFLRKLFEQEVPEIADGLLEIREVSRDPGQRAKI 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+ F+INAL PA V ++ Sbjct: 243 AVKSNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDAGDFIINALSPANVGRI 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKDFNER 358 ++DE+ +VIV ++QL+LAIGR GQNVRLA+ LTGW ++I+T +E + N +D R Sbjct: 303 IIDEEKHACDVIVEEDQLALAIGRGGQNVRLAADLTGWQLNIMTVKEAEERNAAEDAAIR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +N+ E IA++LV EGF +EE+A V I E+ IE + +I+ +AR+ + Sbjct: 363 -EIFMSQMNLSEDIANILVQEGFTSIEEVAYVAIDELQEIEDLSADDVDDIRTKARDAVL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + ++K+ + + ++L ++ G+D + L E I +DLA S+D+L+ + Sbjct: 422 KAALEAEEKLNQ--IDQDLKNLDGMDEDMLRDLAEANITHRDDLAELSLDELIEIT---- 475 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G KD+ E +I+ AR W E A Sbjct: 476 -------------GVSKDEAEKVIMAARAH--WFADETNA 500 >gi|323705403|ref|ZP_08116978.1| transcription termination factor NusA [Thermoanaerobacterium xylanolyticum LX-11] gi|323535305|gb|EGB25081.1| transcription termination factor NusA [Thermoanaerobacterium xylanolyticum LX-11] Length = 345 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 227/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ + + +K I ++ + + ++ A + YGT +++V+++ ETGD+ ++ Sbjct: 4 EFIEALEQICKDKGIPKETMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N +ISL+ A+ +G V + P FGR+A Q+AKQV++Q++REAER Sbjct: 64 VVENVYNDLLEISLEEAQKLSKKYLVGDTVDIEVTPKSFGRIAAQNAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F K EI++G V+R+E NV+VDLG ++ + +E I E + GDR+K YI Sbjct: 124 GIVYEDFLSKESEIVTGIVERIEKKNVLVDLGKTEATLTPNEQIPNETYKHGDRIKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D + Sbjct: 184 EVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYAKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE Sbjct: 244 VDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKEKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 304 ARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSE 340 >gi|167037624|ref|YP_001665202.1| transcription elongation factor NusA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264912|ref|ZP_07546474.1| transcription termination factor NusA [Thermoanaerobacter wiegelii Rt8.B1] gi|320116039|ref|YP_004186198.1| transcription termination factor NusA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389438|ref|ZP_08211005.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|166856458|gb|ABY94866.1| NusA antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920170|gb|EFN50382.1| transcription termination factor NusA [Thermoanaerobacter wiegelii Rt8.B1] gi|319929130|gb|ADV79815.1| transcription termination factor NusA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994443|gb|EGD52868.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 346 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 155/338 (45%), Positives = 228/338 (67%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++ Sbjct: 4 EFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REAER Sbjct: 64 VVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF K E+++G V RV+ NV+++LG + ++ E I E PGDRVK YI Sbjct: 124 NVIYEEFLAKETEVVTGIVTRVDKKNVLINLGRVEAILGPSEQIPGETFAPGDRVKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D + Sbjct: 184 EVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 +DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + +LDE Sbjct: 244 VDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEKEK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 VARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 341 >gi|325267087|ref|ZP_08133756.1| N utilization substance A [Kingella denitrificans ATCC 33394] gi|324981440|gb|EGC17083.1| N utilization substance A [Kingella denitrificans ATCC 33394] Length = 499 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 184/472 (38%), Positives = 295/472 (62%), Gaps = 11/472 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L + +A+A EK+++ DVV + ++ AA+ ++ V IN +TG+ R Sbjct: 4 EILALVEALASEKNVEPDVVFEALEVALGIAAKKKADREHMNLEVRINRDTGEYRTVRKW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE++ +YT + +++ ++ P IDI G + +P FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVEDL-DYTYPELEKTIEQIQEEIPGIDINVGDYFEEDIPNEAFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +R+AER++ F +I+ GTVKRVE ++V+L D +I RD+ + REN R GD Sbjct: 123 IRDAEREQILNAFLATREDIVVGTVKRVERHGIVVELAPKLDALIPRDQMLPRENYRGGD 182 Query: 181 RVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++++ V G Q+LLSRT +F+ KLF EVPEI +G++ ++ V+RDPG RAK+ Sbjct: 183 KIRALFLRVEEFNGGRKQILLSRTSGEFLRKLFEQEVPEIADGLLDIREVARDPGQRAKI 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D IDP G C+G+RGSRV AV EL E+ID+V+WS D+A FVINAL PA V+++ Sbjct: 243 AVKSNDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSDDTADFVINALSPAQVSRI 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DE+ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E +++ Sbjct: 303 VIDEEKNAVDVIVTEDQLALAIGRGGQNVRLAAELTGLQLNIMTVQEAEQRSEEEAAALR 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + DE +A LV F +EE+A V +S++ IE D+E A ++ +AR+ L Sbjct: 363 ELFTSQLGADETVAQALVDAEFTSIEEVAFVPMSDLTDIEEIDDELAETLRAKARDVLLQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ ++K+ V+++L + G+D + L + I EDLA S+D+L+ Sbjct: 423 TELAAEEKLN--SVADDLRELEGVDDDMLRDLVDANITNREDLAELSIDELI 472 >gi|301167102|emb|CBW26681.1| transcription pausing; L factor [Bacteriovorax marinus SJ] Length = 467 Score = 312 bits (800), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 167/418 (39%), Positives = 263/418 (62%), Gaps = 4/418 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ + + E+ I++D+V+ + + AR YG + N DI +++ Sbjct: 4 ELGRVIETLGKERGIEKDIVVKAVEQAFLVTARKKYGIQGEYETRYNDGDDDIEIYQYKN 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +I+L A++ D ++IG + + +F RV VQ+A+Q+I QKVR+AER Sbjct: 64 VVDEVRDPIVEITLADAKELDEEVEIGDQIGIKIENPNFSRVDVQTARQIIFQKVRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EFK K GE+++G +R E GN++VDLG +D V+ R E I EN +PGDR+++++ Sbjct: 124 EILFAEFKHKEGELVTGIARRYERGNIVVDLGKADAVLSRREVIPGENFKPGDRIQAFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V RGP++ LSRT P F+VKLF +EVPEI +G +++K+ +R+PG RAK+AV S D Sbjct: 184 EVVMTNRGPEIRLSRTSPLFLVKLFELEVPEIQDGTIEIKSAAREPGQRAKIAVTSVDKD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGM+GSRVQ VV EL+ EKIDIV W+ D TF AL P+ +T + +D + Sbjct: 244 IDPVGACVGMKGSRVQNVVNELQGEKIDIVKWADDVDTFARAALAPSEITNIQIDHEDHT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V+V ++QLSLAIGRRGQNVRLA+ L+G+ I+II++ Q+ + +Q + Sbjct: 304 MDVVVEEDQLSLAIGRRGQNVRLAAMLSGYKINIISK----TKLQERIQKSVANLVQISS 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 + + +A ++V G + ++A +E+A + D E A I ++ +I LQ Sbjct: 360 ITDTLAQVMVQNGIQAIGDIAAADATELAELLEVDAEQATGIINDTIAAIDAGNIQLQ 417 >gi|83589895|ref|YP_429904.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073] gi|83572809|gb|ABC19361.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073] Length = 362 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/339 (45%), Positives = 234/339 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E +Q + EK I+ D++L + ++ A + +G++ ++RV+I +TG+I + + Sbjct: 4 EFIQALRDLEREKGINADILLEAIEAALISAYKKNFGSLQNVRVDIQRDTGEIKVLAQRQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ AR + ++G +V + P DFGR+A Q+AKQV++Q++REAER Sbjct: 64 VVEEVTDPRQEISLEEARAINSKYELGDIVEKEVTPRDFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + ++++G V+R E N+I+DLG ++ ++ E E R G+R+K Y+ Sbjct: 124 GLIYEEFIGRENDLVTGVVQRQEGKNIILDLGRAEAILLPSEQSPGETYRQGERLKVYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ +GPQ+L+SRTHP + +LF +EVPEI++GIV++K V+R+PG+R+K+AV S D Sbjct: 184 EVRKTNKGPQILVSRTHPGLIKRLFELEVPEIHDGIVEIKGVAREPGARSKIAVHSRDEK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV ELR EK+DI+ WS D A +V N+L PA V V +DE+ Sbjct: 244 VDPVGSCVGPKGARVQAVVQELRGEKVDIIKWSDDPAVYVANSLSPARVLDVTVDEENKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIG+ GQN RLA+++TGW IDI E E Sbjct: 304 SQVIVPDNQLSLAIGKEGQNARLAARITGWKIDIKPESE 342 >gi|262374026|ref|ZP_06067303.1| transcription termination factor NusA [Acinetobacter junii SH205] gi|262311037|gb|EEY92124.1| transcription termination factor NusA [Acinetobacter junii SH205] Length = 494 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 197/487 (40%), Positives = 296/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + GT S+ +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYEGTHSEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y V RE RG Q+LLSR+ P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRSRPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ +++DE +A LV GF +EE+A V IE + + +Q RA+E Sbjct: 361 YLDMFVSRLDIDEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LEADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSAELLGMEGMTTEIAYALAARGVITIDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 +K G + Sbjct: 478 HDKAGQL 484 >gi|294670565|ref|ZP_06735444.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307690|gb|EFE48933.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 457 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 187/448 (41%), Positives = 283/448 (63%), Gaps = 17/448 (3%) Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLP 102 D RVEI+ TG+ FR +V + E+YT + +++ ++ P +I IG + + Sbjct: 2 DARVEIDRNTGEHRTFRRWLIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQIE 60 Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GN 160 FGR A +AKQ+I+Q++R+AER++ +F +I+ GTVKRVE +IV+L G Sbjct: 61 NEGFGRQAAMTAKQIILQRIRDAEREKVLNDFLATREDIVIGTVKRVERHGIIVELVPGK 120 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEV 216 D +I RD++I REN R GDR+++ +R E+ G QV+LSRT +F+ KLF EV Sbjct: 121 LDALIPRDQSIPRENFRSGDRIRALF--LRVEEIGQSGRKQVILSRTSREFLAKLFEQEV 178 Query: 217 PEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 PEI +G+++++ +RDPG RAK+AV ++D IDP G C+G+RGSRV AV E+ E+ID+ Sbjct: 179 PEIADGLLEIREAARDPGHRAKIAVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDV 238 Query: 277 VVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 V+WSPD+A FVINAL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLA+ LTG Sbjct: 239 VLWSPDTAQFVINALSPAEVSRIVIDEDHHAVDVIVAEDQLALAIGRGGQNVRLAADLTG 298 Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 W ++I+T E + F + ++VDE A +LV EGFA +EE+A V E+ Sbjct: 299 WQLNIMTITEAEERHAAEDAALRSLFTEHLDVDEETADVLVQEGFASLEEIAYVPSEELE 358 Query: 397 SIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456 I GFD T ++ RAR+ + + ++K+ E ++E+L ++ GID + L + GI Sbjct: 359 EI-GFDAATVDTLRNRARDAILTQAMAQEEKLEE--IAEDLRTLDGIDEDLLRDLAQAGI 415 Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKF 484 T + LA S+D+L + + G EK Sbjct: 416 TTRDGLAELSIDELREITGVEPGEAEKI 443 >gi|206602206|gb|EDZ38688.1| Transcription termination factor (NusA) [Leptospirillum sp. Group II '5-way CG'] Length = 452 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 174/432 (40%), Positives = 269/432 (62%), Gaps = 25/432 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++ Sbjct: 5 ELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQIRR 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREAE Sbjct: 65 IVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREAEW 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+ + Sbjct: 125 DVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKALLL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D + Sbjct: 185 DMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRDPN 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG++G RVQAVV EL EK+DI+ WSPD +TF+ AL PA +V + +D+G Sbjct: 245 VDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSI-KDMGT 303 Query: 308 ---IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF-- 362 V+V QLSLAIGRRG NVRLA++LTGW +DI +E + + + +ER + Sbjct: 304 EKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQ--MQSEAGLDERAERVAS 361 Query: 363 -----------MQAINVDEI------IAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + ++++ +A +L GF ++ +A + I+++ F +T Sbjct: 362 LAETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKT 421 Query: 406 AVEIQGRAREYL 417 A ++ A+++L Sbjct: 422 AAKLIQTAQDFL 433 >gi|167040285|ref|YP_001663270.1| transcription elongation factor NusA [Thermoanaerobacter sp. X514] gi|300914369|ref|ZP_07131685.1| transcription termination factor NusA [Thermoanaerobacter sp. X561] gi|307724395|ref|YP_003904146.1| transcription termination factor NusA [Thermoanaerobacter sp. X513] gi|166854525|gb|ABY92934.1| NusA antitermination factor [Thermoanaerobacter sp. X514] gi|300889304|gb|EFK84450.1| transcription termination factor NusA [Thermoanaerobacter sp. X561] gi|307581456|gb|ADN54855.1| transcription termination factor NusA [Thermoanaerobacter sp. X513] Length = 346 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/338 (45%), Positives = 228/338 (67%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++ Sbjct: 4 EFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REAER Sbjct: 64 VVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK YI Sbjct: 124 NVIYEEFLAKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D + Sbjct: 184 EVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 +DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + +LDE Sbjct: 244 VDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEKEK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 VARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 341 >gi|167630355|ref|YP_001680854.1| transcription termination factor nusa [Heliobacterium modesticaldum Ice1] gi|167593095|gb|ABZ84843.1| transcription termination factor nusa [Heliobacterium modesticaldum Ice1] Length = 442 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/340 (44%), Positives = 231/340 (67%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E L + EK I ++++L + ++ A + +G++ ++RV I+ TG+ ++ Sbjct: 3 VEFLTALKDLEREKGISKEILLEAIEAALISAYKKNFGSLQNVRVHIDRSTGEFKVYSRK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VEE+ + ++ L A+ DP+ + V+ + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 LIVEELTDPRVEVLLADAQRIDPNYQVNDVIETEVTPREFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF ++ G+I++G V+R E NV VDLG + ++ E ++ E R DR+K+YI Sbjct: 123 RGMIYEEFSNREGDIVTGIVQRTENKNVFVDLGKVEALLAPSEQMNGETYRHNDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQVL+SRTHP + +LF +EVPEI++G V++KA SR+ G+R+K+AV+S D Sbjct: 183 VEVKKTTKGPQVLISRTHPGLLKRLFELEVPEIHDGTVELKAASREAGARSKIAVYSKDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G RVQAVV EL+ EKIDIV W+PD A FV NAL PA V V + E+ Sbjct: 243 NVDPVGACVGPKGMRVQAVVNELKGEKIDIVKWNPDPAKFVANALSPAKVVSVDIIEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 303 VARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|261419460|ref|YP_003253142.1| transcription elongation factor NusA [Geobacillus sp. Y412MC61] gi|297530565|ref|YP_003671840.1| transcription termination factor NusA [Geobacillus sp. C56-T3] gi|319766275|ref|YP_004131776.1| NusA antitermination factor [Geobacillus sp. Y412MC52] gi|261375917|gb|ACX78660.1| NusA antitermination factor [Geobacillus sp. Y412MC61] gi|297253817|gb|ADI27263.1| transcription termination factor NusA [Geobacillus sp. C56-T3] gi|317111141|gb|ADU93633.1| NusA antitermination factor [Geobacillus sp. Y412MC52] Length = 383 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/339 (46%), Positives = 230/339 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F + Sbjct: 4 QLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFTRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K YI Sbjct: 124 SIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 244 VDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|56419795|ref|YP_147113.1| transcription elongation factor NusA [Geobacillus kaustophilus HTA426] gi|56379637|dbj|BAD75545.1| transcription termination-antitermination factor [Geobacillus kaustophilus HTA426] Length = 383 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/339 (46%), Positives = 230/339 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F + Sbjct: 4 QLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K YI Sbjct: 124 SIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 244 VDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|260887250|ref|ZP_05898513.1| transcription termination factor NusA [Selenomonas sputigena ATCC 35185] gi|330838993|ref|YP_004413573.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185] gi|260863312|gb|EEX77812.1| transcription termination factor NusA [Selenomonas sputigena ATCC 35185] gi|329746757|gb|AEC00114.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185] Length = 380 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/342 (45%), Positives = 230/342 (67%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + L+ A+ E+ ++ +V+ + + ++ A + T +RV ++ TG ++ Sbjct: 13 NDGDFLEAVHALGKERGLEAEVLFAAIEAALSSAYLKDFKTAEQVRVALDRMTGKYHVYA 72 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVEEVE+ QISL AR +P+ ++ + + P FGR+A Q+AKQV++Q +RE Sbjct: 73 TKTVVEEVEDDARQISLADARAVNPNYEVDDKIELEVTPATFGRIAAQTAKQVVVQHIRE 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF ++ G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+ Sbjct: 133 AERGIVYEEFSNRDGDIVTGRVQRVEAKNVFIDLGKTEAVLTATEQIPGEEYHHGDRIKA 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V + +GP+VL+SRTHP + +LF +EVPEI G+V++K+V+R+PG R+K+AV+S Sbjct: 193 YIIEVCKTVKGPRVLVSRTHPGLLKRLFELEVPEIQEGVVEIKSVAREPGMRSKIAVYSK 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVG+ VG +G RVQA+V ELR+EKIDIV W+P+ A F+ NAL PA V V ++E+ Sbjct: 253 DENVDPVGSSVGHKGMRVQAIVDELRNEKIDIVKWNPEPAKFIANALSPAKVISVAINEE 312 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQNVRLA++LTGW IDI EE+ Sbjct: 313 AKESRVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKNEEQ 354 >gi|239826654|ref|YP_002949278.1| transcription elongation factor NusA [Geobacillus sp. WCH70] gi|239806947|gb|ACS24012.1| NusA antitermination factor [Geobacillus sp. WCH70] Length = 382 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 160/339 (47%), Positives = 229/339 (67%), Gaps = 3/339 (0%) Query: 11 QIADAVA---YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 Q+ DA+A EK I ++VV+ + +I A + +G ++RV++N ETG I +F E Sbjct: 4 QLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNTETGTIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A+ +P+ IG V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVNDPRLEISLEEAQRINPNYQIGDVLELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+RV+ V V LG ++ ++ E + E +P DR+K YI Sbjct: 124 SVIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKTEALLPASEQMPNETYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 244 VDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LT W IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESE 342 >gi|33519578|ref|NP_878410.1| transcription elongation factor NusA [Candidatus Blochmannia floridanus] gi|33517241|emb|CAD83624.1| transcription pausing; L factor [Candidatus Blochmannia floridanus] Length = 501 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 174/474 (36%), Positives = 290/474 (61%), Gaps = 15/474 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + V+ EK++ ++ + + ++ A R Y DIRV I+ ++G IS FR Sbjct: 4 EILAVVEVVSNEKAVPKEKIFLALEMALAAATRKKYSQDIDIRVSIDRKSGKISTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV +V T +++L+ A+ + I I V D + + F R+ Q+AKQVIIQK+REAER Sbjct: 64 VVNQVIQPTREMTLEAAQLENLEIKINDYVEDIVESVTFDRITTQTAKQVIIQKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +F + GEI++G +K++ +V VDLGN ++G+I+R+E + REN R GDR++ + Sbjct: 124 MIIIEQFLSRQGEIVTGIIKKISRYSVSVDLGNNAEGIIKREEMLPRENFRVGDRIRGIL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V+ + +G + +SRT + +++LF +EVPEI ++ ++A +RDPGSR+K+AV ++D Sbjct: 184 YLVKTDSKGSNLFISRTCTEMLIELFRIEVPEIGEELITIQAAARDPGSRSKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDP+GACVGMRG+RVQAV +EL E++D+++W + FV+NA+ PA + +++DED Sbjct: 244 RIDPIGACVGMRGARVQAVSSELGGERVDVILWDDNPVQFVVNAMIPADIVSMIVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ IGR GQN+RL SQL W ++++T E RQ + FM+ + Sbjct: 304 TMDIAVEESNLAQIIGRNGQNIRLISQLIDWELNVMTVVELEKKRQSEDRNILDIFMRVL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI------ 420 N++E A +L+ GF+ +EELA + ISE+ SI FD+E ++ +A++ L+ + Sbjct: 364 NINEESAKVLIDSGFSSLEELAYIPISELLSIGVFDKEEIDLLRFKAKDALKDLSNKDNN 423 Query: 421 --DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 + T+ + EL + + +I + L GI +EDLA + L G Sbjct: 424 DDNSTIMNSV------SELLKLSSLKYEIALKLINYGIYKLEDLAEQDIVSLSG 471 >gi|147677601|ref|YP_001211816.1| transcription elongation factor NusA [Pelotomaculum thermopropionicum SI] gi|146273698|dbj|BAF59447.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] Length = 360 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 155/350 (44%), Positives = 235/350 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E L+ + EK I DV+L + ++ A + +G++ + RV I+ ETG+ ++ Sbjct: 4 EFLEALKDLEREKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRETGEFKVYTQRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E VE+ +I +K AR +P+ G +V + P DFGR+A Q+AKQV++Q++REAER Sbjct: 64 VSEHVEDPRQEIDIKEARAINPNYAPGDIVESEVTPRDFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF ++ G+I++G V+RVE NV ++LG ++ ++ E I E R GDR+K+YI Sbjct: 124 NIIYEEFANREGDIVTGIVQRVEQKNVYIELGKTEAILAPSEQIPGEEYRQGDRIKTYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ +GPQ+L+SRTHP + +L MEVPE+ GIV++K ++R+ G+R+K+AV+S D + Sbjct: 184 EVRKTTKGPQILVSRTHPGLLKRLLEMEVPELQEGIVELKGIAREAGARSKIAVYSKDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V+EL EKIDI+ W+PD + FV ++L PA V V + E+ Sbjct: 244 VDPVGACVGPKGMRVQNIVSELNGEKIDIIKWNPDPSKFVASSLSPAKVIAVEIWEEEKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + +++NE Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQMREIYPEEYNE 353 >gi|289578389|ref|YP_003477016.1| transcription termination factor NusA [Thermoanaerobacter italicus Ab9] gi|297544665|ref|YP_003676967.1| transcription termination factor NusA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528102|gb|ADD02454.1| transcription termination factor NusA [Thermoanaerobacter italicus Ab9] gi|296842440|gb|ADH60956.1| transcription termination factor NusA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 346 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 155/338 (45%), Positives = 226/338 (66%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++ Sbjct: 4 EFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REAER Sbjct: 64 VVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF K E+I+G V R + NV+++LG + ++ E I E PGDRVK YI Sbjct: 124 NVIYEEFLSKETEVITGIVTRADKKNVLINLGRVEAILGPAEQIPGETFAPGDRVKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D + Sbjct: 184 EVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 +DPVGACVG +G+RVQAVV EL+ EKIDIV WS F+INAL PA + +LDE Sbjct: 244 VDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIINALSPARALSIEILDEKEK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 VARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 341 >gi|226951828|ref|ZP_03822292.1| transcription elongation factor [Acinetobacter sp. ATCC 27244] gi|226837368|gb|EEH69751.1| transcription elongation factor [Acinetobacter sp. ATCC 27244] Length = 494 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 194/487 (39%), Positives = 294/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAAR-----SLYGTMSDIRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + + +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPAQWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + E Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQE 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 +K G + Sbjct: 478 HDKAGQL 484 >gi|189219874|ref|YP_001940515.1| transcription elongation factor [Methylacidiphilum infernorum V4] gi|189186732|gb|ACD83917.1| Transcription elongation factor [Methylacidiphilum infernorum V4] Length = 441 Score = 309 bits (792), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 158/382 (41%), Positives = 248/382 (64%), Gaps = 1/382 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L I + + EK I+R V + M ++ AA+ G D+RVEI+P+TG I++ LE Sbjct: 27 EVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVRAKLE 86 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V+N QISLK AR+ DP+++IG +V + P DFGR+A Q KQ I Q ++ ER Sbjct: 87 VVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALKGIER 146 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 EFKD++ I+SGT++R+E ++I+DLG +G++ E + E G+R+K+Y+ Sbjct: 147 KMVLSEFKDRINNIVSGTIRRIERSDIIIDLGRYEGIMPFKERVPTEEYVVGERIKAYVL 206 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V GP ++LSR+HP F+++L +EV E+ + IV+VKA++R+PG R K+AV+SS+ Sbjct: 207 SVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWSSNPK 266 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG+CVG+RG+RV+ +V EL EKID+ WSP+ I AL+PA V KV +D+ R Sbjct: 267 IDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQQNHR 326 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-NRQKDFNERTQFFMQAI 366 ++V V +E S+A+G++G+N LAS++ GW IDI+ E + N + + + ++ Sbjct: 327 VKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQKITKAAEEMASSL 386 Query: 367 NVDEIIAHLLVAEGFADVEELA 388 +D+ +A +V GF + E +A Sbjct: 387 AIDQSVAEQIVRAGFINPEAVA 408 >gi|196019394|ref|XP_002118970.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens] gi|190577493|gb|EDV18544.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens] Length = 348 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 151/338 (44%), Positives = 238/338 (70%), Gaps = 11/338 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AVA +K I ++ ++ + +++ AA+ YG ++ IN G+I L+R + Sbjct: 10 EILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYREVL 69 Query: 68 VV----------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VV +E I + A++ DP I+ G V+ LPP++ GR+ SAKQ+ Sbjct: 70 VVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAKQI 129 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 II KV+E E+D+ + E+K++VGE+++G V+++E G IV LG+++ ++++D+T+ + + Sbjct: 130 IINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLGSAEAILKKDQTLKTDFYK 189 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+++ + + +E GP ++LSRTH F+++LF EVPEIY+ I++VK ++RDPGSR Sbjct: 190 LGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPGSRT 249 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-V 296 K+AV+SSD SIDPVG+CVGMRG RVQA++ EL+ EKIDIV WS D ATFV+N+L +I V Sbjct: 250 KIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSSIRV 309 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 +KV++DE+ +IE+IVP+E S AIGRRGQN++L S+L Sbjct: 310 SKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISEL 347 >gi|294649082|ref|ZP_06726525.1| transcription elongation factor NusA [Acinetobacter haemolyticus ATCC 19194] gi|292825028|gb|EFF83788.1| transcription elongation factor NusA [Acinetobacter haemolyticus ATCC 19194] Length = 494 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 193/487 (39%), Positives = 294/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAAR-----SLYGTMSDIRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + + +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPAQWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 +K G + Sbjct: 478 HDKAGQL 484 >gi|302039405|ref|YP_003799727.1| transcription termination factor NusA [Candidatus Nitrospira defluvii] gi|300607469|emb|CBK43802.1| Transcription termination factor NusA [Candidatus Nitrospira defluvii] Length = 379 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 158/342 (46%), Positives = 231/342 (67%), Gaps = 1/342 (0%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 NR EL+ + D + +K ID+ V+ + ++Q AA+ +G +I+VEI+P+TG+IS+ Sbjct: 2 NR-ELIAVIDEIGRQKGIDKARVIGAIESALQTAAKKRFGQAENIQVEIDPKTGEISVVS 60 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V+ V N +ISLK AR+ D ++G + + + GR+A Q+AKQVI QKVRE Sbjct: 61 KKIIVDTVANPKAEISLKEAREYDEGAEVGDEIGSLIEMDELGRIAAQTAKQVIFQKVRE 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ + G++++G + +E N +VDLG ++ ++ E I RE R GDRVK+ Sbjct: 121 AEWEAVQKEYSTRQGDLVNGIILGMERRNFLVDLGKTEAILPIQEQIPRETYRRGDRVKA 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VRR + QV+LSR+HPQF+ K+F +EVPE+ IV++K++ R+PG R K+AV S Sbjct: 181 LLLEVRRTPKDVQVILSRSHPQFVAKMFELEVPEVGEKIVEIKSIVREPGDRTKIAVSSR 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVGACVG++GSRVQAVV ELR EKIDI+ W+ D F+ AL PA + KV +DE+ Sbjct: 241 DKAVDPVGACVGIKGSRVQAVVRELRGEKIDIITWTQDPRVFIAEALNPATIEKVGIDEE 300 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E Sbjct: 301 KKSALVVVADSQLSLAIGKNGQNVRLAARLTGWKIDIISATE 342 >gi|302389798|ref|YP_003825619.1| transcription termination factor NusA [Thermosediminibacter oceani DSM 16646] gi|302200426|gb|ADL07996.1| transcription termination factor NusA [Thermosediminibacter oceani DSM 16646] Length = 351 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 237/342 (69%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ D + EK I ++++L + ++ A + YGT ++++ I+ ETG++ ++ Sbjct: 3 IEFIEALDQIEKEKGISKEILLEAIEAALVSAYKKNYGTSQNVKINIDRETGEVKVYSQK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V E+V++ +ISL A+ +P + IG ++S + P FGR+A Q+AKQV++Q+++EAE Sbjct: 63 TVKEDVKDPLLEISLLDAKKINPLVKIGDIISVEVTPKKFGRIAAQTAKQVVMQRIKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ Y EF + ++++G V+R + NVI+DLG ++ ++ +E I E PG+R+K YI Sbjct: 123 RNIIYEEFAGRETDLVTGVVQRFDKKNVIIDLGKTEVILPPNEQIPNETYTPGERIKVYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GP +++SR+HP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S D Sbjct: 183 LEVKKTTKGPVIIVSRSHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKVAVYSKDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G+RVQAVV EL+ EKIDI+ WS + ++ NAL PA V V ++ED Sbjct: 243 NVDPVGACVGPKGTRVQAVVEELKGEKIDIIKWSKNVTEYISNALSPAKVISVDVEEDSK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+V +QLSLAIG+ GQN RLA++LTGW IDI + + DS Sbjct: 303 IARVLVSDQQLSLAIGKEGQNARLAAKLTGWKIDIKSSKTDS 344 >gi|262280758|ref|ZP_06058541.1| transcription termination/antitermination L factor [Acinetobacter calcoaceticus RUH2202] gi|299771783|ref|YP_003733809.1| transcription elongation factor NusA [Acinetobacter sp. DR1] gi|262257658|gb|EEY76393.1| transcription termination/antitermination L factor [Acinetobacter calcoaceticus RUH2202] gi|298701871|gb|ADI92436.1| transcription elongation factor NusA [Acinetobacter sp. DR1] Length = 494 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 196/487 (40%), Positives = 294/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT ++ +RVEI+ +TGD S Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYST 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DLDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRMNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLD 477 Query: 475 ENKGGNI 481 K G + Sbjct: 478 HEKAGQL 484 >gi|320530108|ref|ZP_08031178.1| transcription termination factor NusA [Selenomonas artemidis F0399] gi|320137541|gb|EFW29453.1| transcription termination factor NusA [Selenomonas artemidis F0399] Length = 379 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 153/339 (45%), Positives = 224/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAER Sbjct: 74 VVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI Sbjct: 134 GIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYII 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPEI GIV++KA++R+ GSR+K+AV S++ Sbjct: 194 EVKRSPRGPQIMLSRTHPGLLKKLFELQVPEIQEGIVEIKAIAREAGSRSKVAVHSTEER 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E Sbjct: 254 VDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEKL 313 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 314 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 352 >gi|256750788|ref|ZP_05491673.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|256750371|gb|EEU63390.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1] Length = 346 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 152/338 (44%), Positives = 227/338 (67%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++ Sbjct: 4 EFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++R+AER Sbjct: 64 VVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIRKAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK YI Sbjct: 124 NVIYEEFLSKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D + Sbjct: 184 EVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 +DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + +LDE Sbjct: 244 VDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEKEK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 304 VARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIKSE 341 >gi|309389230|gb|ADO77110.1| NusA antitermination factor [Halanaerobium praevalens DSM 2228] Length = 408 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/340 (43%), Positives = 230/340 (67%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E +Q D + +K I ++V+L + ++ A + +G+ ++R+EI+ E G++ +F Sbjct: 3 IEFIQALDDIEKDKGISKEVLLDAIETALVSAYKKDFGSKDNVRIEISAEAGEVKVFSRK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVEEVEN +ISL A + D IG +V + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 EVVEEVENKNSEISLIEAENIDSKYTIGDIVEIEVTPANFGRIAAQTAKQVVMQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + ++K+K E+I+GT++R N+++D+G ++ ++ E I+ E G+R+K Y+ Sbjct: 123 RDVIFDQYKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGERYEIGERIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +GP++L+SRTHP + +LF +EVPEI+ G+V++K V+R+ G R+K+AV S++ Sbjct: 183 VEVSTTNKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKEVAREAGQRSKMAVSSTEK 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQAVV +L +EKIDIV W D FV NAL PA V V +++ Sbjct: 243 QVDPVGSCVGPKGMRVQAVVDQLNNEKIDIVKWDEDPEVFVANALNPAEVISVDINKSEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW +DI E E Sbjct: 303 IARVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESE 342 >gi|169831086|ref|YP_001717068.1| transcription elongation factor NusA [Candidatus Desulforudis audaxviator MP104C] gi|169637930|gb|ACA59436.1| NusA antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 359 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 231/328 (70%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 E+SI +V+L + ++ A R +GT + RV+++ TGD ++ VV+EVE+ Q Sbjct: 15 ERSISVEVLLEAIEAALLSAYRRNFGTSHNARVQVDRHTGDCKVYARRTVVQEVEDPQDQ 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISL+ AR +P + V + P +FGR+A Q+AKQV++Q++REAER+ + EF + Sbjct: 75 ISLEEARAINPGYQLEDTVESEITPRNFGRIAAQTAKQVVVQRIREAERNMVFEEFASRE 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+I++G V+R+E NV ++LG ++ V+ E I REN RPG R+K+YI +V++ +GP + Sbjct: 135 GDIVTGVVQRIEQRNVYIELGKTEAVLPPAEQIPRENYRPGQRLKTYIVEVKKTTKGPLI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 L+SRTHP + +LF +EVPE++ G+V++KAV+R+ G R+K+AV+S+D IDPVGACVG + Sbjct: 195 LVSRTHPGLLKRLFEIEVPELHQGLVELKAVAREAGIRSKIAVYSNDEGIDPVGACVGPK 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G+RVQA+V EL EKID+V WSPDS+ FV ++L PA V V + ED VIVP QLS Sbjct: 255 GARVQAIVQELNGEKIDVVKWSPDSSKFVSSSLSPAKVIAVEVWEDEKIARVIVPDYQLS 314 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEE 346 LAIG+ GQN RLA++LTGW IDI +E + Sbjct: 315 LAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|220927907|ref|YP_002504816.1| NusA antitermination factor [Clostridium cellulolyticum H10] gi|219998235|gb|ACL74836.1| NusA antitermination factor [Clostridium cellulolyticum H10] Length = 382 Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 151/317 (47%), Positives = 223/317 (70%), Gaps = 2/317 (0%) Query: 38 AARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVV 97 A + +G+ +++V I+ TGD+ +F L +V E+ + IS+ A +P++DIG V Sbjct: 34 AYKKNFGSAMNVKVNIDRVTGDVKVFALRKVAEDPDVEAMDISIGEAAKLNPTLDIGDYV 93 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + P FGR+A Q+AKQV++QK+REAER Y EF +K +I++G ++R+E NVIVD Sbjct: 94 ESEVTPRSFGRIAAQTAKQVVVQKLREAERGIIYDEFYNKESDIVTGIIQRIEKRNVIVD 153 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 LG ++ V+ E E R +R+KSYI +V++ +GPQ++LSRTHP + +LF +EVP Sbjct: 154 LGKTEAVLGSTEQTPGEEYRFNERLKSYIVEVKKTTKGPQIMLSRTHPGLVKRLFELEVP 213 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EI++G V++K++SR+PGSR KLAV+S D ++DPVGACVG +G+RVQA+V ELR EKIDI+ Sbjct: 214 EIHDGTVEIKSISREPGSRTKLAVYSKDENVDPVGACVGQKGTRVQAIVDELRGEKIDII 273 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ ++L PA V +V +DE+ +V+VP QLSLAIG+ GQN RLA++LTGW Sbjct: 274 KWSNDPKDYISSSLSPAKVVRVDVDEEEKSAKVVVPDYQLSLAIGKEGQNARLAAKLTGW 333 Query: 338 TIDIITEEE--DSINRQ 352 IDI +E + SI +Q Sbjct: 334 KIDIKSESQLRQSIEKQ 350 >gi|124515701|gb|EAY57210.1| transcription termination factor (NusA) [Leptospirillum rubarum] Length = 452 Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 173/432 (40%), Positives = 267/432 (61%), Gaps = 25/432 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++ Sbjct: 5 ELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQIRR 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREAE Sbjct: 65 IVERVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREAEW 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+ + Sbjct: 125 DVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKALLL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D + Sbjct: 185 DMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRDPN 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG++G RVQAVV EL EK+DI+ W+ D ATF+ AL PA +V + +D+G Sbjct: 245 VDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWNSDPATFIARALSPAKAVRVSI-KDMGS 303 Query: 308 ---IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF-- 362 V+V QLSLAIGRRG NVRLA++LTGW +DI +E + + + +ER + Sbjct: 304 EKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQ--MQSEAGLDERAERVAS 361 Query: 363 -----------MQAINVDEI------IAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + ++++ +A +L GF ++ +A + I+++ F +T Sbjct: 362 LAETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKT 421 Query: 406 AVEIQGRAREYL 417 A ++ A+++L Sbjct: 422 AAKLIQTAQDFL 433 >gi|313896800|ref|ZP_07830348.1| transcription termination factor NusA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974717|gb|EFR40184.1| transcription termination factor NusA [Selenomonas sp. oral taxon 137 str. F0430] Length = 379 Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 224/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAER Sbjct: 74 VVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI Sbjct: 134 GIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYII 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPE+ GIV++KA++R+ GSR+K+AV S++ Sbjct: 194 EVKRSPRGPQIMLSRTHPGLLKKLFELQVPEMQEGIVEIKAIAREAGSRSKVAVHSTEER 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E Sbjct: 254 VDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEKL 313 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 314 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 352 >gi|325290363|ref|YP_004266544.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271] gi|324965764|gb|ADY56543.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271] Length = 429 Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 152/338 (44%), Positives = 230/338 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + EK I + + + ++ A + Y ++ ++R +++ TG+I ++ Sbjct: 3 IEFIEAVGELEKEKGISSEKLFEAIEAALVSAYKKNYSSLQNVRPQVDRNTGEIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV++ QISL+ A+ DP+ D+ +V + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 NVVEEVDDSRQQISLEEAKKIDPNYDLNDIVEFEVTPREFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ Y E+ ++ G+I++G V+R E NVIVDLG + V+ E I E +P +R+K+Y+ Sbjct: 123 RELIYGEYINREGDIVTGVVQRYEQRNVIVDLGKVEAVLPPSEQIPGETYQPFERIKTYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQVLLSRTHP + +LF +EVPEI++G V++KAV+R+ G+R+K+AV+S D Sbjct: 183 VEVKKTPKGPQVLLSRTHPGLIKRLFELEVPEIHDGFVEIKAVAREAGARSKIAVYSKDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +GSRVQ +V EL+ EK+DI+ WS D FV NAL PA V V + Sbjct: 243 NVDPVGACVGPKGSRVQNIVNELKGEKMDIITWSQDPVEFVSNALSPAKVLGVFPRFEDK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTGW IDI E Sbjct: 303 VTLVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKNE 340 >gi|269926028|ref|YP_003322651.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269789688|gb|ACZ41829.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 372 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 159/340 (46%), Positives = 228/340 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R E ++ E+ I RDV++ + ++++ R Y DI V+I+P TG +++R+ Sbjct: 2 RGEFYAAISQLSLERGIPRDVLIKSVEEAVKAVYRKNYDASGDIEVKIDPNTGQATVYRV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L+VVE V++ QISL A+ D IG VV + P FGR+A Q KQV++QK+REA Sbjct: 62 LQVVENVKDPKTQISLADAKKIDKEARIGSVVHQDVTPDTFGRIAAQMTKQVMLQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E + Y EF D+ GE+++G V+RVE G VIV LG ++ ++ + E + EN +PG R+K Sbjct: 122 EHETIYKEFGDREGELVTGVVQRVENGLVIVQLGKAEAIMPKAEQVESENYKPGQRLKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+++SR + +LF +EVPEIYNG V++KA++R PG R+K+AV + Sbjct: 182 LLKVVKTPRGPQLIVSRRDKNLLKRLFEIEVPEIYNGSVEIKAIARIPGVRSKIAVAARQ 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG+RG+RVQ VV EL+ EKIDI+ WS D ATF+ AL PA V +V+LD++ Sbjct: 242 PGIDPVGSCVGVRGTRVQNVVDELQGEKIDIIQWSDDPATFIARALSPAQVNEVILDKET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP++QLSLAIG+ GQN RLA+ LTGW IDI + E Sbjct: 302 KTATVIVPEKQLSLAIGKDGQNARLAANLTGWRIDIRSPE 341 >gi|260550521|ref|ZP_05824731.1| transcription termination/antitermination L factor [Acinetobacter sp. RUH2624] gi|260406436|gb|EEW99918.1| transcription termination/antitermination L factor [Acinetobacter sp. RUH2624] Length = 494 Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 196/487 (40%), Positives = 293/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT ++ +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLD 477 Query: 475 ENKGGNI 481 K G + Sbjct: 478 HEKAGQL 484 >gi|310828067|ref|YP_003960424.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612] gi|308739801|gb|ADO37461.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612] Length = 411 Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 149/334 (44%), Positives = 232/334 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ DA+ EK+ID++ ++ + SI+ A + YG + D+ V+++ +TG+I+++ + Sbjct: 4 EFMRALDALEAEKNIDKEELIDAIEVSIESAYKKNYGNVQDVDVKLDRDTGEITVYATRD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+VEN QISL+ AR+ DP+ ++G V + P DFGR+A Q+AKQ+I+Q+++EAER Sbjct: 64 IVEDVENLETQISLEEAREIDPTYEVGDVYRKVITPRDFGRIAAQNAKQLIVQRIKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ ++ E+++G + R+E GNV VD+GNS+G + E + E PG R+K Y+ Sbjct: 124 NMVYNEYLERQEEVMTGIINRIERGNVFVDIGNSEGCMPPMEQVPGEKYYPGQRLKVYLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+ +GPQ+ LSRTHP + +LF EVPEIY+GIV + ++SR+ GSR K+AV ++DSS Sbjct: 184 MVRKTTKGPQLRLSRTHPGLVKRLFETEVPEIYDGIVDIVSISREAGSRTKIAVKANDSS 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ ++ EL EKIDI+ +S D ++ NAL PA + +++ ++ Sbjct: 244 VDPVGACVGQKGIRVQNIINELNGEKIDIIKYSDDVREYLSNALSPAKIYRILPNKTEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +V QLSLAIG+ GQNVRLA++L W IDI Sbjct: 304 AIAVVDDFQLSLAIGKEGQNVRLAAKLASWKIDI 337 >gi|138894780|ref|YP_001125233.1| transcription elongation factor NusA [Geobacillus thermodenitrificans NG80-2] gi|196247596|ref|ZP_03146298.1| NusA antitermination factor [Geobacillus sp. G11MC16] gi|134266293|gb|ABO66488.1| N utilization substance protein A [Geobacillus thermodenitrificans NG80-2] gi|196212380|gb|EDY07137.1| NusA antitermination factor [Geobacillus sp. G11MC16] Length = 383 Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 154/339 (45%), Positives = 229/339 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I ++V++ + ++ A + +G ++RV++N +TG I + + Sbjct: 4 QLLEALADLMREKGISKEVIMEAIEAALVSAYKRNFGQAQNVRVDLNMDTGTIRVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVTDPRLEISLEEAQRLNPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ V V LG ++ ++ +E + E +P DR+K YI Sbjct: 124 SIIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 244 VDPVGACVGPKGQRVQAIVDELHGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|255319713|ref|ZP_05360921.1| transcription termination/antitermination, L factor [Acinetobacter radioresistens SK82] gi|262380005|ref|ZP_06073160.1| transcription termination factor NusA [Acinetobacter radioresistens SH164] gi|255303242|gb|EET82451.1| transcription termination/antitermination, L factor [Acinetobacter radioresistens SK82] gi|262298199|gb|EEY86113.1| transcription termination factor NusA [Acinetobacter radioresistens SH164] Length = 494 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 291/473 (61%), Gaps = 16/473 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT ++ +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTTAEEARLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR EVV E+ E CQ ++ D DP+ IG + + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWEVVADEDHEMPACQDAIS---DVDPAKWSIGDIRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I++E LRP Sbjct: 121 QKIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ E+E +Q + + Sbjct: 301 IVLDEDTHSADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEDEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEVAYVPAETFDEIE-LDTELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + Q+ I++ SEEL ++ G+ +I +L G+ T++DLA + DD+ Sbjct: 420 LADALKQQENIQD--PSEELLNMEGMTREIAYSLAARGVVTVDDLADQATDDI 470 >gi|89895266|ref|YP_518753.1| hypothetical protein DSY2520 [Desulfitobacterium hafniense Y51] gi|89334714|dbj|BAE84309.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 493 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 157/374 (41%), Positives = 243/374 (64%), Gaps = 10/374 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F Sbjct: 3 MEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEVE+ Q+S++ AR DP+ I VV + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 NVVEEVEDARTQVSMEEARKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K+++ Sbjct: 123 RGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTFV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S DS Sbjct: 183 VEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V + Sbjct: 243 NVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--------DSINRQKDFNER 358 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + D Q ++ E Sbjct: 303 VALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEEY 362 Query: 359 TQF--FMQAINVDE 370 +F + + N DE Sbjct: 363 DEFADYAEYENYDE 376 >gi|184156669|ref|YP_001845008.1| transcription elongation factor NusA [Acinetobacter baumannii ACICU] gi|332873077|ref|ZP_08441034.1| transcription termination factor NusA [Acinetobacter baumannii 6014059] gi|183208263|gb|ACC55661.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|322506556|gb|ADX02010.1| nusA [Acinetobacter baumannii 1656-2] gi|323516435|gb|ADX90816.1| transcription elongation factor NusA [Acinetobacter baumannii TCDC-AB0715] gi|332738589|gb|EGJ69459.1| transcription termination factor NusA [Acinetobacter baumannii 6014059] Length = 494 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 196/487 (40%), Positives = 292/487 (59%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT S+ +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 +K G + Sbjct: 478 HDKAGQL 484 >gi|293610134|ref|ZP_06692435.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827366|gb|EFF85730.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124307|gb|ADY83830.1| nusA; transcription elongation factor NusA [Acinetobacter calcoaceticus PHEA-2] Length = 494 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 195/487 (40%), Positives = 293/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT ++ +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 K G + Sbjct: 478 HEKAGQL 484 >gi|295696156|ref|YP_003589394.1| transcription termination factor NusA [Bacillus tusciae DSM 2912] gi|295411758|gb|ADG06250.1| transcription termination factor NusA [Bacillus tusciae DSM 2912] Length = 383 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/343 (45%), Positives = 222/343 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ D + EK I +DV++ + ++ + + + +++RV++N ETGD+ +F Sbjct: 4 DFIEALDQLEREKGISKDVLIEAIEAALISGYKRNFNSAANVRVDVNRETGDVRVFARKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE + +ISL+ A P +G +V + P DFGR+A Q+AKQV+ Q++REAER Sbjct: 64 VVEETADPRMEISLEAAEQISPHYTVGDIVEIEVTPKDFGRIAAQTAKQVVTQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D+ +I++G V+R + VDLG + ++ E I E L+ GDRVK++I Sbjct: 124 GLIYHEYLDREEDIVTGLVQRQDARYTYVDLGKVEALLPFHEQIPGEKLKQGDRVKAFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQVLLSRTHP + +LF +EVPEIY G+V++K+V+R+ G R+K+AVFS Sbjct: 184 KVEKTTKGPQVLLSRTHPGLLKRLFELEVPEIYEGVVEIKSVAREAGHRSKIAVFSRKPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG RVQ VV EL EK+DIV WS D FV NAL PA V V + ED Sbjct: 244 VDPVGACVGPRGMRVQHVVAELHGEKVDIVKWSEDPEEFVKNALSPAKVVSVEIAEDERV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + N Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAN 346 >gi|332799221|ref|YP_004460720.1| NusA antitermination factor [Tepidanaerobacter sp. Re1] gi|332696956|gb|AEE91413.1| NusA antitermination factor [Tepidanaerobacter sp. Re1] Length = 357 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/335 (43%), Positives = 226/335 (67%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + EK I +D++L + S+ A + YG+ ++ V I+ +TG++ +F Sbjct: 3 IEFIEALAQIEKEKGISKDILLDALEASLISAYKKNYGSSQNVSVSIDRDTGEVKVFSKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V +EV++ +I + A +P+ IG V+S + P FGR+A Q+AKQV++Q++REAE Sbjct: 63 VVTDEVKDTLLEIDINEAYTFNPTAKIGDVISIEVTPKKFGRIAAQTAKQVVMQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + E+ + +I++G V+R + NVI+DLG ++ ++ E IS E G+R+K YI Sbjct: 123 RDLIFEEYSGRETDIVTGIVQRFDKKNVIIDLGKTEAILPTGEQISSEEYVQGNRIKVYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+ +SR+HP + +LF +EVPEIY GIV++K ++R+ GSR K+AV+S + Sbjct: 183 LEVKKTTKGPQITVSRSHPGLVKRLFELEVPEIYEGIVEIKGIAREAGSRTKIAVYSKNE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDPVGACVG +GSRVQ++V EL EKIDI+ W D A F+ NAL PA V V+++E+ Sbjct: 243 NIDPVGACVGPKGSRVQSIVDELNGEKIDIIKWDKDVAEFISNALSPAKVLNVIVEENTK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V + QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 303 TARVTVSESQLSLAIGKEGQNARLAARLTGWKIDI 337 >gi|169797408|ref|YP_001715201.1| transcription elongation factor NusA [Acinetobacter baumannii AYE] gi|213155778|ref|YP_002317823.1| transcription elongation factor NusA [Acinetobacter baumannii AB0057] gi|215484847|ref|YP_002327084.1| Transcription elongation protein nusA [Acinetobacter baumannii AB307-0294] gi|239500931|ref|ZP_04660241.1| transcription elongation factor NusA [Acinetobacter baumannii AB900] gi|260556300|ref|ZP_05828519.1| transcription termination factor NusA [Acinetobacter baumannii ATCC 19606] gi|301346315|ref|ZP_07227056.1| transcription elongation factor NusA [Acinetobacter baumannii AB056] gi|301513268|ref|ZP_07238505.1| transcription elongation factor NusA [Acinetobacter baumannii AB058] gi|301596448|ref|ZP_07241456.1| transcription elongation factor NusA [Acinetobacter baumannii AB059] gi|332855373|ref|ZP_08435838.1| transcription termination factor NusA [Acinetobacter baumannii 6013150] gi|332867631|ref|ZP_08437763.1| transcription termination factor NusA [Acinetobacter baumannii 6013113] gi|169150335|emb|CAM88232.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter baumannii AYE] gi|193076182|gb|ABO10797.2| transcription termination/antitermination L factor [Acinetobacter baumannii ATCC 17978] gi|213054938|gb|ACJ39840.1| transcription elongation factor NusA [Acinetobacter baumannii AB0057] gi|213986270|gb|ACJ56569.1| Transcription elongation protein nusA [Acinetobacter baumannii AB307-0294] gi|260410355|gb|EEX03654.1| transcription termination factor NusA [Acinetobacter baumannii ATCC 19606] gi|332727505|gb|EGJ58931.1| transcription termination factor NusA [Acinetobacter baumannii 6013150] gi|332733825|gb|EGJ64972.1| transcription termination factor NusA [Acinetobacter baumannii 6013113] Length = 494 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 196/487 (40%), Positives = 291/487 (59%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT S+ +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAIS---DVDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 K G + Sbjct: 478 HEKAGQL 484 >gi|50083628|ref|YP_045138.1| transcription elongation factor NusA [Acinetobacter sp. ADP1] gi|49529604|emb|CAG67316.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter sp. ADP1] Length = 494 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 193/487 (39%), Positives = 295/487 (60%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT ++ +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR +V E+ E CQ ++ D D S IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTLVADEDHEMPACQDAIS---DVDASKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I++E LRP Sbjct: 121 QKIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRMNAILYSVNREGRGAQLLLSRARPEMLMALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDTRSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D+E +Q RA+E Sbjct: 361 YLDMFVTRLDIEEDLAMALVEMGFTSLEEIAYVPPETFDEIE-LDQELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ ++E V EL ++ G+ ++ AL G+ T++DLA + DD+ G S Sbjct: 420 LTDALKQQENVQEPSV--ELLAMAGMTQELAYALAARGVVTVDDLADQATDDISDIEGLS 477 Query: 475 ENKGGNI 481 E K G + Sbjct: 478 EEKAGQL 484 >gi|126652571|ref|ZP_01724736.1| transcription elongation factor NusA [Bacillus sp. B14905] gi|126590699|gb|EAZ84815.1| transcription elongation factor NusA [Bacillus sp. B14905] Length = 379 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 152/337 (45%), Positives = 227/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E RP DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYRPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|88608874|ref|YP_506405.1| N utilization substance protein A [Neorickettsia sennetsu str. Miyayama] gi|88601043|gb|ABD46511.1| N utilization substance protein A [Neorickettsia sennetsu str. Miyayama] Length = 537 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 178/454 (39%), Positives = 277/454 (61%), Gaps = 29/454 (6%) Query: 70 EEVENYTCQISLKVARDRDPSID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 EE +Y I L AR + PSI+ G ++++ LP G + + K + + + R Sbjct: 102 EEKVHYDGVIDLSTARLKYPSIEHKAGDIITEHLPSFSSGYIIARVMKAKLERLITSLVR 161 Query: 128 DRQYLEFKDKVGEIISGTVKR-VEYG----NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++QY +K +VGEI++G VK+ +++ ++IVD+ +G++ + E+ RPG+RV Sbjct: 162 EKQYHCYKGRVGEIVTGIVKKSIDFKTGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERV 221 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K I V PQ+LLSR+ F+ +LF +VPEIY+ +V+++ V+RD GSR+K+AVF Sbjct: 222 KCVIQKVEYSVVKPQILLSRSSGSFVAQLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVF 281 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 SSD +IDPVGAC+GM GSR+ AVV EL EKIDIV +S D+ATF+ NAL+P K+ ++ Sbjct: 282 SSDRNIDPVGACIGMGGSRINAVVNELHGEKIDIVEYSNDTATFLANALKPIRPVKITVN 341 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +IE++VP E +SL IGR GQNV L S L G+ ++++++ E S + ++F T F Sbjct: 342 EETKKIELVVPDESVSLVIGRGGQNVYLLSSLLGYRVEVLSDAEFSKKKMEEFISGTARF 401 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++A+NV+E+IA LLV EGF+ VEE+A S +A IEGFD++ A EI+ RA EY+ Sbjct: 402 VEALNVEEVIAQLLVTEGFSTVEEIADCNTSRLAFIEGFDKDIAEEIRSRAVEYVN---- 457 Query: 423 TLQKKIRELG----VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K++R L + + ++ D+ + L +G+ +E +A S D+L E G Sbjct: 458 EQPKRVRALAEKYKANPNMLALSSFDTGLLEVLFSSGLTDLEKVAELSCDEL---REVIG 514 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 N GF G P +E +II +R +GW+ Sbjct: 515 DN-----GF----GVP--LLEQLIIRSRKTLGWL 537 >gi|323489587|ref|ZP_08094814.1| transcription elongation factor NusA [Planococcus donghaensis MPA1U2] gi|323396718|gb|EGA89537.1| transcription elongation factor NusA [Planococcus donghaensis MPA1U2] Length = 375 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 152/337 (45%), Positives = 228/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + +K I R+V++ + ++ A + + ++RV++N TG + ++ + Sbjct: 4 ELLDAFEVLEKQKGISREVLIEAIEAALVTAYKRNFNQAQNVRVDLNLNTGTMLVYSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ ++G VV + + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDERLQISLEDAKVINPAYELGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF D+ +I++G V+R++ N+ V LG + V+ + E + E+ +P DR+K YI Sbjct: 124 GLIFEEFVDRADDIVNGIVERMDARNLYVGLGKVEAVLPQTEQMPNEHYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV +SRTHP + +LF EVPEIY+GIV++K+++R+ G R+K++VF+ Sbjct: 184 KVERTTRGPQVFVSRTHPGLLRRLFENEVPEIYDGIVEIKSIAREAGDRSKISVFAHRDD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG+CVG +G RVQ +V EL EKIDIV WS + FV NAL P+ V V ++E+ Sbjct: 244 IDPVGSCVGSKGGRVQTIVNELSGEKIDIVEWSEEPVIFVANALSPSKVLDVQVNEEAKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|257453568|ref|ZP_05618858.1| transcription elongation factor NusA [Enhydrobacter aerosaccus SK60] gi|257449026|gb|EEV23979.1| transcription elongation factor NusA [Enhydrobacter aerosaccus SK60] Length = 493 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 184/488 (37%), Positives = 290/488 (59%), Gaps = 17/488 (3%) Query: 5 NRLELLQIADAVAYEKSID-RDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDIS 61 NR E+L + + V+ EK ++ D+ ++ + + +Y ++ RV IN +TGD Sbjct: 2 NR-EILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYSEQPEVAVRVHINRKTGDYD 60 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +R VV E+ E CQ+++ D D + IG V + + ++FGR+A AKQVI Sbjct: 61 TYRYWTVVADEDHEMPACQLAIS---DLDENEWKIGDVKEEQIESIEFGRIAATQAKQVI 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR 177 IQK+REAER F+ ++GE+I+G VK+ I+DLG N +G + RD+ + RE LR Sbjct: 118 IQKIREAERSLVADAFEHRIGEMITGEVKKPARDGYIIDLGDNVEGYLPRDKMLPREQLR 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 R+ + + V R+ RG Q++LSRT PQ + L EVPEI I++++ V+R PG RA Sbjct: 178 IKGRINAILEQVNRDNRGAQLVLSRTSPQMLTALMQKEVPEIAEQIIEIRDVARQPGLRA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K++V ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D+ ++I+AL PA V Sbjct: 238 KISVKTNDHRIDPVGACIGMRGTRIQAVQQELEGERIDVVVWSDDAVQYIISALEPADVD 297 Query: 298 KVVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +++LDED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E + ++ + Sbjct: 298 RIILDEDTKTADIIFATNDQLARAIGSQGQNVRLASELTGYRLNMMLEDEYNAQQESETK 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 F + VDE +A LV GF +EE+A V I+G D++ IQ RA+E Sbjct: 358 VYRDLFYTRLEVDEDLAQALVDIGFTSLEEVAYVPAETFYDIDGLDDDAIDAIQERAKEA 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS---VDDLLGW 473 + ++ Q+ I+E S+EL ++ G+ L E + T++DLA + + D+ G Sbjct: 418 VIADELVKQQNIKE--PSQELLNLEGMTQAWAYKLAERDVITVDDLAEQAIFDIQDIEGL 475 Query: 474 SENKGGNI 481 E G + Sbjct: 476 DEKTAGEL 483 >gi|121535260|ref|ZP_01667074.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306145|gb|EAX47073.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1] Length = 348 Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 153/346 (44%), Positives = 235/346 (67%), Gaps = 3/346 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+A E +Q + + EK I +++ + ++ A + +G+ ++RV ++ TG+I Sbjct: 1 MVNA---EFMQAFEQLGKEKGIAPEILFDAIEAALISAYKRNFGSAQNVRVSLDRTTGEI 57 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ VVE V++ ++SL+ AR D ++ VV + P DFGR+A Q+AKQV++Q Sbjct: 58 HVYARKTVVEVVKDPRLEMSLEEARAIDVRYELDDVVEIEVTPKDFGRIAAQTAKQVVVQ 117 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++REAER Y EF ++ +I++G V+R+E NV +DLG ++ ++ E I E + GD Sbjct: 118 RIREAERGIIYEEFSNRESDIVTGIVQRIEQKNVYIDLGKAEAILTPSEQIPGEVYKHGD 177 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+YI +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K+A Sbjct: 178 RLKTYIIEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREPGMRSKIA 237 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ++D VGACVG +G RVQ +V ELR EKIDIV WS D A F+ NAL PA V V Sbjct: 238 VHSRDENVDAVGACVGHKGMRVQTIVNELRGEKIDIVKWSSDPAKFIANALSPAKVISVE 297 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ++E +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 298 VNETEKVSKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 343 >gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191] gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191] Length = 463 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 164/443 (37%), Positives = 262/443 (59%), Gaps = 26/443 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N EL+ +++ EK+I RD ++ + D++ A R G + I +INPE GDI Sbjct: 1 MEGNPKELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIK 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 F++L +VE V N +ISL+ A+ D ++GG +++ L DF R+A Q AKQV+IQK Sbjct: 61 AFQVLNIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR ER+ Y EFK + GE+I+G+V+R +++VDLG + ++ E I RE G R Sbjct: 121 VRGIERENTYKEFKPREGEVITGSVRRFSDRDIVVDLGKVEAILPYSEQIKRERYSNGSR 180 Query: 182 VKSYI-------------------------YDVRREQRGPQVLLSRTHPQFMVKLFHMEV 216 +K+ I + + + QRGP V+LSRT P F+ LF +EV Sbjct: 181 IKAIITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEV 240 Query: 217 PEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 PEI GIV++KA+ RDPG RAK+ V S D+ +DP+G CVGMRG R++A++ EL E+ID+ Sbjct: 241 PEIGEGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDL 300 Query: 277 VVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 + +S D T ++N++ PA V ++ + + +IVP +QL++AIG+ QN++LAS+LT Sbjct: 301 IPYSEDVTTMIMNSIAPARANSVKIISAEEKKALIIVPDDQLAIAIGKDWQNIKLASKLT 360 Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 GW +++ +E + Q + + A LV GF+ VE++A ++ + Sbjct: 361 GWELEVKSESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHL 420 Query: 396 ASIEGFDEETAVEIQGRAREYLE 418 A+++G E++A +I A++YLE Sbjct: 421 ATVQGIGEKSAAKIIEGAKKYLE 443 >gi|169634554|ref|YP_001708290.1| transcription elongation factor NusA [Acinetobacter baumannii SDF] gi|169153346|emb|CAP02459.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter baumannii] Length = 494 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 195/487 (40%), Positives = 291/487 (59%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT S+ +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV ++ E CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADDDHEMPACQDAIS---DVDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWS 474 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ G Sbjct: 420 LTDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLG 477 Query: 475 ENKGGNI 481 K G + Sbjct: 478 HEKAGQL 484 >gi|220931626|ref|YP_002508534.1| NusA antitermination factor [Halothermothrix orenii H 168] gi|219992936|gb|ACL69539.1| NusA antitermination factor [Halothermothrix orenii H 168] Length = 377 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 154/338 (45%), Positives = 232/338 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E L D + EK I ++V++ + ++ A + +G+ ++RV I P++G++ ++ Sbjct: 3 IEFLHALDDIEKEKGISKEVLIEAIETALLSAYKKEFGSKENVRVHIVPDSGEVHVYSQK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VV+EV N +ISL+ A+ + + + G +V + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 KVVDEVNNERKEISLEEAQKLNKNYEPGDIVEKEVTPANFGRIAAQTAKQVVMQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y E+K K GEII+GTV+R NV++DLG ++ ++ E I E G R+K Y+ Sbjct: 123 RDVIYEEYKQKEGEIITGTVQRFHNNNVLIDLGRTEALLPPSEQIPGELYEMGRRIKVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +GP++L+SR+HP + +LF +EVPEI++GIV++KAV+R+ G R+K+AV S D Sbjct: 183 VEVASTTKGPRILVSRSHPGLLKRLFEVEVPEIFDGIVEIKAVAREAGYRSKMAVSSYDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVG+CVG +G RVQAVV +L EKIDI+ WS D A V NAL PA V V LDE+ Sbjct: 243 NVDPVGSCVGPKGMRVQAVVDQLNGEKIDIIEWSEDPAILVANALNPAKVINVSLDEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 EV+VP QLSLAIG+ GQN RLA++LTGW +DI +E Sbjct: 303 VAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKSE 340 >gi|296113981|ref|YP_003627919.1| transcription termination/antitermination protein NusA [Moraxella catarrhalis RH4] gi|295921675|gb|ADG62026.1| transcription termination/antitermination protein NusA [Moraxella catarrhalis RH4] gi|326559307|gb|EGE09734.1| transcription elongation factor NusA [Moraxella catarrhalis 7169] gi|326564317|gb|EGE14547.1| transcription elongation factor NusA [Moraxella catarrhalis 103P14B1] gi|326565082|gb|EGE15275.1| transcription elongation factor NusA [Moraxella catarrhalis 46P47B1] gi|326567250|gb|EGE17370.1| transcription elongation factor NusA [Moraxella catarrhalis 12P80B1] gi|326568244|gb|EGE18326.1| transcription elongation factor NusA [Moraxella catarrhalis BC8] gi|326569945|gb|EGE19992.1| transcription elongation factor NusA [Moraxella catarrhalis BC1] gi|326570023|gb|EGE20069.1| transcription elongation factor NusA [Moraxella catarrhalis BC7] gi|326572881|gb|EGE22866.1| transcription elongation factor NusA [Moraxella catarrhalis CO72] gi|326573671|gb|EGE23629.1| transcription elongation factor NusA [Moraxella catarrhalis O35E] gi|326574706|gb|EGE24642.1| transcription elongation factor NusA [Moraxella catarrhalis 101P30B1] Length = 493 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 186/472 (39%), Positives = 286/472 (60%), Gaps = 15/472 (3%) Query: 8 ELLQIADAVAYEKSID-RDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFR 64 E+L + + V+ EK ++ D+ ++ + + +Y + IRV I+ +TG+ FR Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYTEQPEVAIRVHIDRKTGNYDTFR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV E+ E CQ+++ D D + IG V + + ++FGR+A AKQVIIQK Sbjct: 64 YWTVVADEDHEMPACQLAIS---DLDENEWQIGDVKEEQIESIEFGRIAATQAKQVIIQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +REAER F+ ++G++ISG +K+ IVDLG +G + +D+T+ RE LR Sbjct: 121 IREAERALVADAFESRIGDLISGEIKKQSRDAYIVDLGEGGEGYLAKDQTLPRETLRVKS 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV + + V R+ R PQ++LSRT + ++ L + EVPEI I++++ V+R PG RAK++ Sbjct: 181 RVSAILSQVNRDGRSPQLMLSRTSNEMLIALMNKEVPEISEQIIEIRDVARLPGLRAKIS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGAC+GMRG+R+QAV EL E+ID++VW+ D A ++I+AL PA V +V Sbjct: 241 VKTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVIVWNEDPAQYIISALEPADVIGLV 300 Query: 301 LDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 LDED EVI +QL+ AIG +GQNVRLAS+LTG+ +++I E E S RQ N+ Sbjct: 301 LDEDAKTAEVIFATNDQLARAIGSQGQNVRLASELTGYKLNMILESEYS-ERQASENQAV 359 Query: 360 -QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + + +D +A +L GFAD+E +A + E I+G D+ET IQ RA+E + Sbjct: 360 IDLFYERLELDRDLAEVLAEVGFADIETVAYAPVEEFYEIDGLDDETITAIQERAKEVII 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +I Q+ I+E S EL ++ + I L E I T++DLA ++ D+ Sbjct: 420 SDEIAKQQNIKE--PSAELLALEDMTPAIAYKLAERDIITLDDLAEQAIFDI 469 >gi|299534743|ref|ZP_07048073.1| transcription elongation factor NusA [Lysinibacillus fusiformis ZC1] gi|298729831|gb|EFI70376.1| transcription elongation factor NusA [Lysinibacillus fusiformis ZC1] Length = 379 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 152/337 (45%), Positives = 227/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E+ P DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGESYHPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++VF+ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVFAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVIFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|188586067|ref|YP_001917612.1| NusA antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350754|gb|ACB85024.1| NusA antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 380 Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 143/327 (43%), Positives = 226/327 (69%), Gaps = 1/327 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I++D++ + ++ A + + + ++RV + ETGD+ ++ +VVEEVEN Q Sbjct: 15 DKGINKDILFEAIEAALISAYKRNFDSDKNVRVHMERETGDVRVYHQKQVVEEVENPKEQ 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISL+ AR P ++ +V + + P +FGR+A Q+AKQV+IQ++REAER+ Y E+ DK Sbjct: 75 ISLEEARKISPGYEVDDLVEEEVTPKNFGRIAAQTAKQVVIQRIREAERELIYEEYVDKQ 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +II+G V+R+E NVI+DLG + ++ E + + GDR+K+Y+ +V++ + PQ+ Sbjct: 135 DDIINGIVQRIEQKNVIIDLGKVEAILPPQEQMDTDEYNQGDRIKAYVVEVKKTTKEPQI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +LSRTHP + +L +EVPEIY+G V++K ++R+ G R+K+AV+S +DPVG+CVG + Sbjct: 195 ILSRTHPGLIKRLLELEVPEIYDGTVEIKGIAREAGYRSKVAVYSRHEEVDPVGSCVGNK 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQL 317 GSR+Q++V EL+ E ID++ WS D F+ N+L P+ V +V VLDE + V+VP QL Sbjct: 255 GSRIQSIVDELKGENIDVITWSSDPVVFISNSLSPSKVLEVKVLDEQDQKARVVVPDHQL 314 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITE 344 SLAIG+ GQN RLA++LT W IDI++E Sbjct: 315 SLAIGKEGQNARLAAKLTNWKIDILSE 341 >gi|262377017|ref|ZP_06070243.1| transcription termination factor NusA [Acinetobacter lwoffii SH145] gi|262308055|gb|EEY89192.1| transcription termination factor NusA [Acinetobacter lwoffii SH145] Length = 494 Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 194/487 (39%), Positives = 291/487 (59%), Gaps = 19/487 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT S+ +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTHSEEARLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR EVV E+ E CQ ++ D DP+ IG + + +DFGR+A Q AKQVI+ Sbjct: 64 FRQWEVVADEDHEMPACQDAIS---DVDPAKWSIGDIRELEVESIDFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +++V RE RG Q+ LSR P ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILFNVNREGRGAQLQLSRAKPDMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSS 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVIDEDARTADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYYARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ +++ E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVTRLDIAEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEIA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWS 474 + Q+ I+ SEEL ++ G+ +I AL G+ T++DLA + D D+ G Sbjct: 420 LADALQQQENIQ--APSEELVAMEGMTVEIAQALAARGVVTVDDLADQATDDIEDIEGLG 477 Query: 475 ENKGGNI 481 K G + Sbjct: 478 AEKAGQL 484 >gi|225874866|ref|YP_002756325.1| transcription termination factor NusA [Acidobacterium capsulatum ATCC 51196] gi|225794228|gb|ACO34318.1| transcription termination factor NusA [Acidobacterium capsulatum ATCC 51196] Length = 548 Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 175/422 (41%), Positives = 258/422 (61%), Gaps = 17/422 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF---RL 65 L Q +A++ +K ID +VV+ + D+I A R Y T ++R E++ ETG+I + + Sbjct: 5 LYQSIEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYIYKAV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +E E +E+ QI+L+ AR P +++GG + P GR+A Q AKQVI QKVREA Sbjct: 65 VETPELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ +VGE+++ TVKRVE +VI DLG ++ + + E E G+RV+ Sbjct: 125 ERDTVFNEYAHRVGEVLTATVKRVEMQDVIFDLGKAEARMPKREQSRLEQFSVGERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIAVMSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVSIADLS 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++++ ++ F Q Sbjct: 305 EKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEE----KRQEVEQQMGGFAQ 360 Query: 365 ---AINVDEI------IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 A ++E+ I LVA G VE LA + ++ I G E+T +I R Sbjct: 361 GGTATAIEEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVRH 420 Query: 416 YL 417 Y Sbjct: 421 YF 422 >gi|219669697|ref|YP_002460132.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2] gi|219539957|gb|ACL21696.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 493 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 148/338 (43%), Positives = 230/338 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F Sbjct: 3 MEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEVE+ Q+S++ A+ DP+ I VV + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 NVVEEVEDSRTQVSMEEAQKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K+++ Sbjct: 123 RGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTFV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D+ Sbjct: 183 VEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRDA 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V + Sbjct: 243 NVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LT W IDI +E Sbjct: 303 VALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSE 340 >gi|254796878|ref|YP_003081715.1| N utilization substance protein A [Neorickettsia risticii str. Illinois] gi|254590114|gb|ACT69476.1| N utilization substance protein A [Neorickettsia risticii str. Illinois] Length = 537 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 171/441 (38%), Positives = 272/441 (61%), Gaps = 21/441 (4%) Query: 79 ISLKVARDRDPSID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 I L A+ + P+++ G ++++ LP G + + K + + + R++QY +K Sbjct: 111 IDLSTAKLKYPNVEHKAGDIITERLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKG 170 Query: 137 KVGEIISGTVKR-VEYG----NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 +VGEI++G VK+ +++ ++IVD+ +G++ + E+ RPG+RVK I V Sbjct: 171 RVGEIVTGIVKKSIDFKAGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEY 230 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 PQ+LLSR+ F+ +LF +VPEIY+ +V++K V+RD GSR+K+AVFSSD +IDPV Sbjct: 231 SVIKPQILLSRSSGSFVAQLFSQQVPEIYDRVVEIKKVARDAGSRSKVAVFSSDRNIDPV 290 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GAC+GM GSR+ AVV+EL EKID+V +S D+ATF+ NAL+P K+ ++E+V +IE++ Sbjct: 291 GACIGMGGSRINAVVSELHGEKIDVVEYSSDTATFLANALKPIRPVKIAVNEEVKKIELV 350 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 VP E +SL IGR GQNV L S L G+ ++++++ E S + ++F T F++A+NV+E+ Sbjct: 351 VPDESVSLVIGRGGQNVYLLSSLLGYRVEVLSDAEVSKKKMEEFISGTARFVEALNVEEV 410 Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIREL 431 IA LLV EGF+ VEE+A S +A IEGFDE+ A EI+ RA EY+ Q + + Sbjct: 411 IAQLLVTEGFSTVEEIADCNTSRLAFIEGFDEDVAEEIRSRAVEYVNEQPKRTQALVEKY 470 Query: 432 GVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSL 491 + + ++ D+ + L +G+ +E +A S D+L E G N GF L Sbjct: 471 KANPNMLALSSFDTGLLEVLFSSGLTDLEKVAELSCDEL---REVIGDN-----GFAVPL 522 Query: 492 GTPKDQVESMIIHARYKMGWI 512 +E +II +R +GW+ Sbjct: 523 ------LEQLIIRSRETLGWL 537 >gi|262370081|ref|ZP_06063408.1| transcription termination/antitermination protein [Acinetobacter johnsonii SH046] gi|262315120|gb|EEY96160.1| transcription termination/antitermination protein [Acinetobacter johnsonii SH046] Length = 494 Score = 302 bits (774), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 188/473 (39%), Positives = 292/473 (61%), Gaps = 16/473 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY--GTMSD---IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + GT S+ +RVEI+ +TG+ S Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRKTGEYST 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR EVV E+ E CQ ++ D DP+ IG + +P +DFGR+A Q AKQVI+ Sbjct: 64 FRQWEVVADEDHEMPACQDAIS---DVDPAQWSIGDIRELEVPSIDFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I++E LRP Sbjct: 121 QKIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +++V RE RG Q+ LSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILFNVNREGRGAQLQLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DE+ ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E +Q + + Sbjct: 301 IVIDEEERTADIIFATSDQLARAIGSQGQNVRLASELTGYKLNMMLEDEYHARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDLFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAEVVELLQSRAKEVA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + Q+ I++ S EL ++ G+ +I AL G+ T++DLA + DD+ Sbjct: 420 LADALQQQENIQD--PSAELVAMEGMTQEIAYALAARGVITIDDLADQATDDI 470 >gi|313888283|ref|ZP_07821954.1| transcription termination factor NusA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845686|gb|EFR33076.1| transcription termination factor NusA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 411 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 164/412 (39%), Positives = 254/412 (61%), Gaps = 19/412 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + EK I +++V + ++ + R YGT ++ V ++ ETG+I LF + Sbjct: 4 EFIDALSEIEKEKGISKEIVFEALESALVSSYRKNYGTSENVIVNMDRETGEIKLFASKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+VE+ +ISL A+ +P+ +IG V + + P +FGR+A Q+AKQV+IQ++++AER Sbjct: 64 IVEKVEDPQLEISLDEAKKINPNYEIGDVYNQEIHPKNFGRIAAQTAKQVVIQRIKDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + E+ ++ EII+G V+R Y NV VDLG+++ ++ E IS E+ GDR K I Sbjct: 124 DIVFDEYVEREKEIITGLVQRKSYNNVYVDLGSTEAILPYSEQISGESYNHGDRYKMLIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ++LSR+HP + +LF +E+PE+ GIV++ ++SR+ GSR K+AVFS D Sbjct: 184 SVEKSTKGPQIVLSRSHPDLIKRLFELEIPEVSEGIVEIYSISREAGSRTKIAVFSRDPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG +G RV A+V E+ +EKIDIV++ + F+ N+L P+ V KV ++E Sbjct: 244 VDPLGACVGYKGQRVNAIVDEIDNEKIDIVIYEKEIDKFIANSLSPSKVEKVFVNEAEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-------EEDSINRQKDFNERTQ 360 IVP QLSLAIG+ GQNVRLA++LTGW IDI + EE +I + E Sbjct: 304 ALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSNLQFEEYLEERNITEEDLIEEYEN 363 Query: 361 FFMQAINVDEIIAHLLVAE----GFADVEELACVKISEIASIEGFDEETAVE 408 + NV+E+ L E D+E+ C ++E DEE++VE Sbjct: 364 AVKE--NVEEVSEDLNNPEEQDIKIDDIEDEVC------GNLENADEESSVE 407 >gi|169827165|ref|YP_001697323.1| transcription elongation factor NusA [Lysinibacillus sphaericus C3-41] gi|168991653|gb|ACA39193.1| Transcription elongation protein [Lysinibacillus sphaericus C3-41] Length = 379 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 226/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E P DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYHPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|303240818|ref|ZP_07327331.1| transcription termination factor NusA [Acetivibrio cellulolyticus CD2] gi|302591706|gb|EFL61441.1| transcription termination factor NusA [Acetivibrio cellulolyticus CD2] Length = 371 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 143/339 (42%), Positives = 230/339 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ + + EK I++D+++ + ++ A + +G+ ++RV ++ +TGD ++ L Sbjct: 4 DLIHALEQLEKEKGIEKDIIIEAIEAALISAYKRNFGSSQNVRVSVDRQTGDFKVYALKR 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + +N IS++ A+ + +D + + P FGR+A Q+AKQV++Q++REAER Sbjct: 64 VTSDPQNEYMDISVENAKKINAELDEEDMAEVEVTPKKFGRIAAQTAKQVVVQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF +K EI++G V+R E NVI+DLG ++ V+ E IS E + DR+K Y+ Sbjct: 124 GIIFDEFSNKEAEIVTGIVQRTEKKNVIIDLGKTEAVLAPTEQISGEEYKFNDRIKVYVI 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R +GPQ+++SRTHP + +LF +EVPEI+ G+V++K++SR+PGSR K+AV+S D + Sbjct: 184 EVKRTTKGPQIMVSRTHPGLIKRLFELEVPEIHEGVVEIKSISREPGSRTKIAVYSKDDN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V ELR EKIDI+ WS + ++ ++L PA V +V + E+ Sbjct: 244 VDPVGACVGQKGTRVQTIVDELRGEKIDIIKWSSNPQEYISSSLSPAKVVRVDISEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 AKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|284108775|ref|ZP_06386440.1| transcription elongation factor NusA [Candidatus Poribacteria sp. WGA-A3] gi|283829849|gb|EFC34140.1| transcription elongation factor NusA [Candidatus Poribacteria sp. WGA-A3] Length = 404 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 154/338 (45%), Positives = 226/338 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + EL+ + + V EK ID+ VL+ + ++ AA+ YG +I+V+I+PETG+IS+ L Sbjct: 2 KHELMAVIEQVGREKGIDKHRVLAAVESALLTAAKKRYGNNENIQVQIDPETGEISIVSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + +++ + QISL AR D ++G + + +FGR+A Q+AKQVI QKVREA Sbjct: 62 KTIADQITDVNAQISLDEARAIDGEAELGDEIGSLIDVEEFGRIAAQAAKQVICQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G+++ G + E N +V++G ++ V+ E I RE R GDRV++ Sbjct: 122 TWEAVEREYSKREGDLVHGIILGQERRNYLVEIGKTEAVLPVHEQIPREVHRRGDRVRAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VRR + QV+LSR HPQF+VKLF +EVPE+ I+++K V R+PG R K+AVFS D Sbjct: 182 LLEVRRTPKDVQVILSRAHPQFVVKLFQLEVPEVTEKILEIKGVVREPGDRTKIAVFSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG++GSRVQA+V EL+ EKIDI+ W+ D F+ AL PA + KV +DE+ Sbjct: 242 KAVDPVGACVGIKGSRVQAIVRELKGEKIDIIPWTTDPRVFIGEALNPASIEKVGIDEEK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+V QLSLAIG+ GQNVRLA++LTGW IDII+ Sbjct: 302 KAALVVVADSQLSLAIGKNGQNVRLAAKLTGWKIDIIS 339 >gi|258516334|ref|YP_003192556.1| transcription elongation factor NusA [Desulfotomaculum acetoxidans DSM 771] gi|257780039|gb|ACV63933.1| NusA antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 144/328 (43%), Positives = 226/328 (68%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I DV++ + ++ A + +G++ + RV I+ ETGD ++ V EEV++ + Sbjct: 15 EKGIAVDVLIDAIEAALLSAYKRNFGSLQNARVHIDRETGDFKVYSQRTVTEEVQDDRLE 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I+L A+ DP ++G VV + + P +FGR+A Q+AKQV++Q++REAER+ Y F + Sbjct: 75 ITLADAQKIDPRFELGDVVENEVTPRNFGRIAAQTAKQVVVQRIREAERNIIYETFSSRE 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +II+G V+R+E N+ ++LG ++ ++ E + E + GDR+K+YI +VR+ +GPQ+ Sbjct: 135 SDIITGVVQRIEQKNIYIELGKTEAILTPSEQMPNETYKHGDRIKAYIVEVRKTTKGPQI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SRTHP + +LF +EVPE+ GIV++K+V+R+ G+R+K+AV+S D ++DPVGACVG + Sbjct: 195 YVSRTHPGLLKRLFELEVPELEEGIVELKSVAREAGARSKIAVYSKDENVDPVGACVGPK 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G+RVQ +V EL EKIDI+ W PD++ +V ++L PA V V + ED V+VP QLS Sbjct: 255 GARVQNIVNELNGEKIDIIKWDPDASKYVASSLSPAKVVAVEIWEDEKVARVVVPDYQLS 314 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEE 346 LAIG+ GQN RLA++LTG IDI +E + Sbjct: 315 LAIGKEGQNARLAAKLTGCKIDIKSESQ 342 >gi|150390438|ref|YP_001320487.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149950300|gb|ABR48828.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 346 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 148/340 (43%), Positives = 232/340 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LE ++ + + +K I RDV+ + ++ + + +G+ ++RVE+ +TGD+ ++ Sbjct: 3 LEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYSQK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE+ +I++ A++ DP+ + +V + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 KVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF ++ EII+GTV RV GNV ++LG ++ ++ +E I E DR+K+YI Sbjct: 123 RGIVYEEFINRESEIITGTVSRVAKGNVYINLGKTEAILGPNEQIPNEVYNHADRIKTYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GPQ+ +SRTHP + +LF +EVPEI++G+V+VK++SR+ GSR K+AVFS D Sbjct: 183 VEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFSIDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +GSRVQ +V EL+ EKIDI+ +S + F+ N+L PA V ++ + Sbjct: 243 NVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNPEDK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 303 TARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|326204063|ref|ZP_08193924.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325985830|gb|EGD46665.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 382 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 148/317 (46%), Positives = 223/317 (70%), Gaps = 2/317 (0%) Query: 38 AARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVV 97 A + +G+ +++V I+ TGD+ ++ L +V E+ + IS+ A +P+++IG V Sbjct: 34 AYKKNFGSAMNVKVNIDRVTGDVKVYALRKVAEDPDMEAMDISVGEAAILNPTLEIGDYV 93 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + P FGR+A Q+AKQV++QK+REAER Y EF +K +I++G ++R+E NVIVD Sbjct: 94 ESEVTPRSFGRIAAQTAKQVVVQKLREAERGIIYDEFYNKESDIVTGIIQRIEKRNVIVD 153 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 LG ++ V+ E E R +R+KSYI +V++ +GPQ+++SRTHP + +LF +EVP Sbjct: 154 LGKTEAVLGPTEQTPGEEYRFNERLKSYIVEVKKTTKGPQIMISRTHPGLVKRLFELEVP 213 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EI++G V++K++SR+PGSR K+AV+S D ++DPVGACVG +G+RVQA+V ELR EKIDI+ Sbjct: 214 EIHDGTVEIKSISREPGSRTKIAVYSKDENVDPVGACVGQKGTRVQAIVDELRGEKIDII 273 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ ++L PA V +V +DED +V+VP QLSLAIG+ GQN RLA++LTGW Sbjct: 274 KWSNDPRDYISSSLSPAKVVRVDVDEDEKSAKVVVPDYQLSLAIGKEGQNARLAAKLTGW 333 Query: 338 TIDIITEEE--DSINRQ 352 IDI +E + SI +Q Sbjct: 334 KIDIKSESQLRQSIEKQ 350 >gi|317129165|ref|YP_004095447.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315474113|gb|ADU30716.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 374 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 147/339 (43%), Positives = 226/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + +K ID++++L + ++ + + + ++RV+I+ TG I +F E Sbjct: 4 EFMDALTTIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRNTGSIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A++ P D+ VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDSRLEISLEAAKNIHPQYDVDDVVEIEVTPRDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+YI Sbjct: 124 GIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPVSEQMPNETYKHNDRIKAYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + D Sbjct: 184 KVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAEDPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V +V ++E+ Sbjct: 244 VDPVGSCVGPKGQRVQTIVNELKGEKIDIVRWSEDPKVYVANALSPSNVVQVTVNEEEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIG++GQN RLA++LTGW IDI ++ E Sbjct: 304 TQVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSQSE 342 >gi|23099050|ref|NP_692516.1| transcription elongation factor NusA [Oceanobacillus iheyensis HTE831] gi|22777278|dbj|BAC13551.1| transcriptional termination-antitermination factor [Oceanobacillus iheyensis HTE831] Length = 364 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/340 (43%), Positives = 230/340 (67%), Gaps = 3/340 (0%) Query: 10 LQIADAV---AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +Q+ DA+ A EK ID+D+++ + ++ A + + + S++RVE+N ETG ++++ Sbjct: 3 MQLFDAIENLAKEKGIDKDILMEALEAALISAYKKNFKSASNVRVELNEETGKMAVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+E+E+ +I L A+ DP+ ++ V+ + P DFGR+A Q+AKQV+ Q+VREAE Sbjct: 63 TVVDEIEDVQQEIPLDEAKKIDPNYEVDDVIEVEVTPKDFGRIAAQAAKQVVTQRVREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R + E+ D+ ++++G ++R + V V+LG + + E + E+ DR+K ++ Sbjct: 123 RGVIFSEYVDREEDVMTGIIQRKDPRFVYVNLGKIEAKLAESEQMPTEDYHVHDRLKVFV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ+ +SR+HP + +LF MEVPEIY+G V++K+V+R+ G R+K++V++ D Sbjct: 183 TKVENTSKGPQIFISRSHPGLLKRLFEMEVPEIYDGTVEIKSVAREAGDRSKISVYAPDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVG+CVG RG RVQA+VTEL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 243 EIDPVGSCVGQRGQRVQAIVTELKGEKIDIVQWSEDPVVYVSNALSPSKVVKVSVNEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 303 STTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|289423074|ref|ZP_06424889.1| transcription termination factor NusA [Peptostreptococcus anaerobius 653-L] gi|289156405|gb|EFD05055.1| transcription termination factor NusA [Peptostreptococcus anaerobius 653-L] Length = 424 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 174/436 (39%), Positives = 266/436 (61%), Gaps = 26/436 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E +Q + + ++ ID++V+L + ++ A + +G+ ++R+++N ETGDI ++ Sbjct: 3 VEFMQALEELVKDRGIDKEVLLETIEQALTSAYKKNFGSAQNVRIDLNRETGDIKVYSQR 62 Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+E + Y +I L AR+ P+ ++G ++ + PMDFGR+A Q+AKQ+++QK+RE Sbjct: 63 VVVDEQDLYDNFLEIELSEAREISPNYELGDIIEHEVTPMDFGRIAAQTAKQIVVQKIRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEY--GNVIV--DLGNSDGVIRRDETISRENLRPGD 180 AER+ Y EF +K E+I+G + R G IV +G +GV+ E I E + G Sbjct: 123 AEREMTYNEFIEKQDELITGEISRTSQRDGKCIVFAQIGKGEGVLLASEQIRGEEYKIGT 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K Y+ DV + + PQ+LLSR+H + +LF MEVPEI +G VQ+K++SR+ GSR K+A Sbjct: 183 NMKFYVVDVNKTSKNPQILLSRSHTGLVKRLFEMEVPEIQDGTVQIKSISREAGSRTKMA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D +IDP+GACVG +GSRV+ +V EL DEKIDIV +S D FV +L P+ VTKV Sbjct: 243 VLSTDENIDPIGACVGTQGSRVRNIVDELGDEKIDIVKYSDDIGQFVEASLSPSKVTKVF 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E VIVP QLSLAIG+ GQN RLA++LT W IDI E DF E + Sbjct: 303 VNEKEKSAVVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPE--------SDFTEEDE 354 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + +++I + L E EE A +++E E D+E A+E A+E +E Sbjct: 355 RAL----LEKIASDKLAVE-----EEKASKELAEENPAEDMDKEVALE---SAQEAMEPA 402 Query: 421 DITLQKKIRELGVSEE 436 D+ + ++I G EE Sbjct: 403 DVEVAEEILSDGEVEE 418 >gi|89098596|ref|ZP_01171478.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911] gi|89086558|gb|EAR65677.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911] Length = 394 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 226/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I RD+++ + ++ A R + ++R+++N +G + +F E Sbjct: 4 ELLDALTLLEKEKGISRDIIIEAIEAALISAYRRNFNQAQNVRIDLNLGSGTMRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + +ISL A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEQVFDPRLEISLDEAKGINPNYQVEDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I Sbjct: 124 GIIYSEFIDREEDIMTGIVQRQDPKFIYVSLGKIEAILPANEQMPNEQYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K++V + +S Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVSREAGDRSKISVHADNSE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WSPD FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSPDPVVFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETE 342 >gi|295698482|ref|YP_003603137.1| transcription termination factor NusA [Candidatus Riesia pediculicola USDA] gi|291156972|gb|ADD79417.1| transcription termination factor NusA [Candidatus Riesia pediculicola USDA] Length = 390 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 240/364 (65%), Gaps = 9/364 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + V+ EKSI R+ + + +I A + D+RV IN +TGD FR Sbjct: 4 EILTVVELVSNEKSIPREKIFEALEIAIATATKKKSVQNIDVRVSINQKTGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ A+ +P +++G + + + F R+A Q+AKQVI QKVREAER Sbjct: 64 VVKEVVQPTLEITLEAAQFENPRVELGHYLEYRIRSIQFDRIATQTAKQVIFQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 D +F ++ GE++SG VK+V + I D+G N + ++ +++ + REN R DR+K + Sbjct: 124 DIVVQQFSERSGEMLSGIVKKVNKDSTIFDIGQNIEAIVSKEDMLPRENFRINDRIKGVL 183 Query: 187 YDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 YD+R++ RG PQ+++SRT + +++LF +EVPEIY GIV++K + RDPG+R+K+AV ++D Sbjct: 184 YDIRQDSRGRPQLIVSRTSKRMLIELFRLEVPEIYEGIVEIKIIVRDPGTRSKMAVITND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVGMRGSRVQ++ EL E+ID+++W+ + A F INA+ PA V+ +++DE Sbjct: 244 KRIDPVGACVGMRGSRVQSISNELCGERIDVILWNENLARFTINAMAPAEVSSIIVDEKK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNER 358 +++ V + L+ AIGR GQNVRLASQL W ++I+TE+E + ++ E+ Sbjct: 304 HSVDIAVEERNLAQAIGRNGQNVRLASQLLKEHRKDDRWELNIMTEKEMLLKNNQNKEEK 363 Query: 359 TQFF 362 F Sbjct: 364 KVFL 367 >gi|291523276|emb|CBK81569.1| transcription termination factor NusA [Coprococcus catus GD/7] Length = 348 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 151/339 (44%), Positives = 226/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ D + EK I +D++L + +S+ A ++ YG +IRV +N ETG++ +F Sbjct: 6 ELIKALDDIEKEKGISKDILLEAIENSLVAACKNEYGKADNIRVTMNRETGEVKVFADKT 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +IS+ AR ++ D G +V + P +FGR+A Q AKQV++QK+RE ER Sbjct: 66 VVEEVEDPEMEISVADARLKNKFYDPGDIVHVEIVPKNFGRIAAQKAKQVVVQKIREEER 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + +I++G V+R N+ V+LG D V+ +E + E +P DR+K YI Sbjct: 126 KSLYNEYYGREKDIVTGVVQRYNGKNISVNLGKVDAVLTENEQVKGEVFKPTDRIKLYIV 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+V +SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV S++ + Sbjct: 186 EVKNTTKGPKVTVSRTHPELVKRLFEAEVTEVRDGTVEIKSIAREAGSRTKIAVSSNNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS D A + NAL PA V V +D + Sbjct: 246 VDPVGACVGMNGARVNAIVDELRGEKIDIINWSEDPAVLIENALSPAKVVSVDVDPEEKS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 306 AAVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQ 344 >gi|323141193|ref|ZP_08076094.1| transcription termination factor NusA [Phascolarctobacterium sp. YIT 12067] gi|322414336|gb|EFY05154.1| transcription termination factor NusA [Phascolarctobacterium sp. YIT 12067] Length = 357 Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 145/328 (44%), Positives = 228/328 (69%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK ID +++ + D++ A + GT ++RVE+N ETG+I ++ VVE + + Sbjct: 15 EKGIDPELLFQAVDDALVAAYKKNTGTNQNVRVEMNKETGEIHVYAQRTVVEGEADGINE 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ++L+ A+ +P G +V + P +FGR+A Q+AKQ ++Q++REAER + Y F+ + Sbjct: 75 MTLEDAQAINPQYLAGDIVEVEVTPKNFGRIAAQNAKQFVVQRIREAERGQVYERFQSRA 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +I++G ++R+E NV +DLG + V+ +E I E + +R+K+YI +V+R +GPQ+ Sbjct: 135 NDIVTGIIERMENQNVYIDLGKVEAVLTPNEQIPGEIYQYHERMKTYIVEVKRTNKGPQI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 ++SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K++V+++DS++DPVGACVG + Sbjct: 195 MVSRTHPGLLKRLFELEVPEIHDGVVEIKSVAREPGMRSKISVYTADSNVDPVGACVGHK 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RVQ +V ELR EKIDIV +S D A +V NAL PA V K ++E V+VP QLS Sbjct: 255 GMRVQTIVNELRGEKIDIVKYSEDPAQYVANALSPAKVVKTNVNEADKICRVVVPDYQLS 314 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEE 346 LAIG+ GQN RLA++LTGW IDI +E + Sbjct: 315 LAIGKEGQNARLAAKLTGWKIDIKSETQ 342 >gi|254974853|ref|ZP_05271325.1| transcription elongation protein [Clostridium difficile QCD-66c26] gi|255092240|ref|ZP_05321718.1| transcription elongation protein [Clostridium difficile CIP 107932] gi|255313980|ref|ZP_05355563.1| transcription elongation protein [Clostridium difficile QCD-76w55] gi|255516660|ref|ZP_05384336.1| transcription elongation protein [Clostridium difficile QCD-97b34] gi|255649759|ref|ZP_05396661.1| transcription elongation protein [Clostridium difficile QCD-37x79] gi|260682915|ref|YP_003214200.1| transcription elongation protein [Clostridium difficile CD196] gi|260686513|ref|YP_003217646.1| transcription elongation protein [Clostridium difficile R20291] gi|306519864|ref|ZP_07406211.1| transcription elongation protein [Clostridium difficile QCD-32g58] gi|260209078|emb|CBA62223.1| transcription elongation protein [Clostridium difficile CD196] gi|260212529|emb|CBE03480.1| transcription elongation protein [Clostridium difficile R20291] Length = 384 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 160/384 (41%), Positives = 244/384 (63%), Gaps = 14/384 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 4 EFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQRV 63 Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++REA Sbjct: 64 VVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Y Sbjct: 124 EREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIKFY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S D Sbjct: 184 ILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVKSID 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DED Sbjct: 244 EKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LT W IDI +E ++ Q + Sbjct: 304 KSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSE-----------SQAEQEMLNL 352 Query: 366 INVDEIIAHLLVAEGFADVEELAC 389 N EI A + AE F D EEL Sbjct: 353 ENSKEIEAEDVEAE-FIDQEELGT 375 >gi|212639524|ref|YP_002316044.1| transcription elongation factor NusA [Anoxybacillus flavithermus WK1] gi|212561004|gb|ACJ34059.1| Transcription elongation factor [Anoxybacillus flavithermus WK1] Length = 367 Score = 299 bits (765), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 223/339 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ +K I ++V++ + +I A + + ++RV+ N ETG I +F E Sbjct: 4 ELLDALTALERDKGISKEVLIEAIEAAIVSAYKRNFNQAQNVRVDFNQETGTIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ +P+ +G VV + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDEAKRINPNYQVGDVVEIEVTPKNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ E + E +P DR+K YI Sbjct: 124 GVIYAEFVDREEDIMTGIVQRTDSKFIYVSLGKIEALLPVSEQMPNETYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LT W IDI ++ E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSQSE 342 >gi|332981612|ref|YP_004463053.1| NusA antitermination factor [Mahella australiensis 50-1 BON] gi|332699290|gb|AEE96231.1| NusA antitermination factor [Mahella australiensis 50-1 BON] Length = 349 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 142/346 (41%), Positives = 231/346 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E +Q + EK + +DV+L + ++ A + YGT +++ V+IN +GDI ++ + Sbjct: 4 EFMQALYKIEKEKHLPKDVLLQAIQSALLSAYKKDYGTANNVSVDINANSGDIKVYAAKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V+N +I L ARD P + +G +++ + P DF R+A ++A+ +++QK+ E E+ Sbjct: 64 VVEDVKNSAVEIDLYKARDIRPDVQLGDIINIEVTPKDFRRIAAKAARDIVLQKIHEVEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D E+ +K GEI++ TV R++ NV +DLG +G++ +ET+ E + DR+K YI Sbjct: 124 DIILDEYSEKEGEILTATVARLDRKNVYLDLGKIEGIMPMNETVPSEIYKVNDRLKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + ++ + P V++SR+HP + +LF +E+PEI++GIV ++A++R+ G R+K+AV+S Sbjct: 184 EAKKGGKSPNVIVSRSHPGLVKRLFELEIPEIHDGIVDIRAIAREAGHRSKVAVYSKYDK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+G+C+G +G+R+Q ++ ELR E+IDIV WS F+ NAL PA V +V+L+E Sbjct: 244 IDPIGSCIGPKGTRIQTIMNELRGERIDIVEWSLMPERFIANALSPAKVLEVILNEKEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 VIVPK QLSLAIG+ GQN RLA++LTGW IDI T ++ +N K Sbjct: 304 ARVIVPKNQLSLAIGKEGQNARLAAKLTGWKIDIKTPDQQEVNETK 349 >gi|229544433|ref|ZP_04433491.1| NusA antitermination factor [Bacillus coagulans 36D1] gi|229324918|gb|EEN90595.1| NusA antitermination factor [Bacillus coagulans 36D1] Length = 399 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 155/337 (45%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + EK I RDV++ + ++ A R + ++R ++N G I +F + Sbjct: 4 ELVDALTILEKEKGISRDVLVEAIEAALVSAYRRNFNQAQNVRTDLNLANGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A+ +PS +IG VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDPRLEISLEDAQKINPSYEIGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ E+++G V+R + V LG ++ ++ E E P DR+K YI Sbjct: 124 GIIYNQFIDREDEVMTGIVQRKDPRFTYVSLGKTEALLPPGEQSPNETYNPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +GPQ+ +SRTHP + +LF +EVPEIY+GIV++++++R+ G R+K++V++ Sbjct: 184 KVERTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGIVEIRSIAREAGDRSKISVYTDRPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL EKIDIV WS D A FV NAL PA V V++DE+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELHGEKIDIVKWSDDPAKFVANALSPAKVLDVLVDENNKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|15614979|ref|NP_243282.1| transcription elongation factor NusA [Bacillus halodurans C-125] gi|20139215|sp|Q9KA74|NUSA_BACHD RecName: Full=Transcription elongation protein nusA gi|10175036|dbj|BAB06135.1| transcriptional terminator [Bacillus halodurans C-125] Length = 382 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/339 (43%), Positives = 225/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + EK I ++V++ + ++ + + ++RV++N E G I +F E Sbjct: 4 EFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ +I++G V+R + + VDLG + ++ E + E+ R DR+K+YI Sbjct: 124 GIIYADFIDREEDIMTGIVQRQDNRFIYVDLGKVEALLPLSEQMPNESYRHNDRIKAYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHAENPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +GSRVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 244 VDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|126698905|ref|YP_001087802.1| transcription elongation protein [Clostridium difficile 630] gi|255100326|ref|ZP_05329303.1| transcription elongation protein [Clostridium difficile QCD-63q42] gi|255306264|ref|ZP_05350436.1| transcription elongation protein [Clostridium difficile ATCC 43255] gi|115250342|emb|CAJ68164.1| Transcription elongation protein [Clostridium difficile] Length = 384 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/382 (41%), Positives = 244/382 (63%), Gaps = 14/382 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 4 EFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQRV 63 Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++REA Sbjct: 64 VVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Y Sbjct: 124 EREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIKFY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S D Sbjct: 184 ILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRSID 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DED Sbjct: 244 EKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LT W IDI +E ++ Q + Sbjct: 304 KSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSE-----------SQAEQEMLNL 352 Query: 366 INVDEIIAHLLVAEGFADVEEL 387 N EI A + AE F D EEL Sbjct: 353 ENSKEIEAEDVEAE-FIDQEEL 373 >gi|307243330|ref|ZP_07525494.1| transcription termination factor NusA [Peptostreptococcus stomatis DSM 17678] gi|306493277|gb|EFM65266.1| transcription termination factor NusA [Peptostreptococcus stomatis DSM 17678] Length = 423 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/345 (44%), Positives = 228/345 (66%), Gaps = 6/345 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E +Q D + ++ ID+DV+L + ++ A + +G+ ++R+++N ETGDI ++ Sbjct: 4 EFIQALDELVRDRGIDKDVLLETIEQALTSAYKKNFGSAQNVRIDMNRETGDIKVYSQRV 63 Query: 68 VVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E + Y +I L AR+ +P+ ++G ++ + P DFGR+A Q+AKQ+++QK+REA Sbjct: 64 VVDESDLYDNFLEIELSEAREINPNYELGDIIEHEVTPKDFGRIAAQTAKQIVVQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDR 181 ER+ Y EF +K E+++G + R + V V +G +GV+ + E I E+ + G Sbjct: 124 EREMTYNEFLEKQDELVTGEISRTSSRDGKQIVFVQIGKGEGVLLQSEQIRNEDYKIGSN 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V R + PQ+LLSRT+ + +LF MEVPEI GIV +K++SR+ GSR K+AV Sbjct: 184 MKFYVLEVNRTNKNPQILLSRTNAGLVKRLFEMEVPEIQEGIVHIKSISREAGSRTKMAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +IDP+GACVG +G+RV+ +V EL DEKIDIV +S D ATF+ AL P+ VT+V + Sbjct: 244 KSIDENIDPIGACVGTQGARVRNIVDELGDEKIDIVKYSDDPATFIEAALSPSKVTRVFI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 DE VIVP QLSLAIG+ GQN RLA++LT W IDI E E Sbjct: 304 DEANKSAIVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPESE 348 >gi|221632782|ref|YP_002522004.1| transcription termination factor NusA [Thermomicrobium roseum DSM 5159] gi|221155810|gb|ACM04937.1| transcription termination factor NusA [Thermomicrobium roseum DSM 5159] Length = 439 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/330 (46%), Positives = 225/330 (68%), Gaps = 8/330 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEE 71 VA E+ I R+ V+ +S+Q+A R++Y G+ ++ +EI+ TG I +F VVE+ Sbjct: 12 VAAERGIPREAVM----ESVQQALRTVYKKATGSDEEVEIEIDVNTGKIRIFAPKRVVEK 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +IS++ AR DP +G +V P +FGR+A Q+AKQVI+Q++R+ ERD Y Sbjct: 68 VNDPLSEISIEEARKIDPRAIVGDIVRIERQPSNFGRIAAQTAKQVILQRIRDFERDTIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EF D+VGE+++GTV+RV+ VI+ G ++ ++ E I E RPG R+K Y+ DV + Sbjct: 128 NEFIDRVGEVLTGTVQRVDARAVILSFGKAEAILPAREQIPGERYRPGQRLKVYLVDVTK 187 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + +GPQ+L+SRTHP + +L +EVPE+ +G V+V A++R+PG R+K+AV + +DPV Sbjct: 188 DAKGPQLLVSRTHPNLIKRLLELEVPEVASGAVEVMAIAREPGQRSKVAVAARQDKVDPV 247 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG+RG R+Q++VTEL EKID++ WS D TF+ NAL PA V+L+ED V+ Sbjct: 248 GACVGVRGVRIQSIVTELSGEKIDVIEWSSDIRTFIANALSPAKPITVILNEDEKVARVV 307 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VP EQ+S AIG+ GQN RLA +LTGW IDI Sbjct: 308 VPPEQMSQAIGKDGQNARLAYKLTGWRIDI 337 >gi|255655319|ref|ZP_05400728.1| transcription elongation protein [Clostridium difficile QCD-23m63] gi|296451304|ref|ZP_06893044.1| transcription termination factor NusA [Clostridium difficile NAP08] gi|296880344|ref|ZP_06904307.1| transcription termination factor NusA [Clostridium difficile NAP07] gi|296259910|gb|EFH06765.1| transcription termination factor NusA [Clostridium difficile NAP08] gi|296428585|gb|EFH14469.1| transcription termination factor NusA [Clostridium difficile NAP07] Length = 384 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 148/339 (43%), Positives = 228/339 (67%), Gaps = 2/339 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 4 EFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQRV 63 Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++REA Sbjct: 64 VVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Y Sbjct: 124 EREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIKFY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S D Sbjct: 184 ILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRSID 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DED Sbjct: 244 EKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LT W IDI +E Sbjct: 304 KSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSE 342 >gi|309791818|ref|ZP_07686305.1| NusA antitermination factor [Oscillochloris trichoides DG6] gi|308226140|gb|EFO79881.1| NusA antitermination factor [Oscillochloris trichoides DG6] Length = 442 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/329 (44%), Positives = 222/329 (67%), Gaps = 3/329 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I ++ ++ VM ++ A + G ++ V+++P+TG ++ +VV+EV Sbjct: 12 IAAERGIPKEAIIDVMEKALITAYKRTLGNNPPPMEVSVKLDPQTGAARVYAEKQVVDEV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + ++ L VAR P++ IG V P DFGR+A Q+AKQV++Q ++E ER+ Y Sbjct: 72 YDERFEVELAVARKVQPNVQIGETVVIESTPNDFGRIAAQTAKQVVLQGIKEVEREHIYG 131 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ D+ GE+I+ TV+R+ GNVI+++G ++ ++ E + + G R+K Y+ ++R+E Sbjct: 132 EYMDREGELITATVQRLAKGNVILEMGKAEAILPPKEQVESDRYYHGQRLKVYLMEIRKE 191 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP+++ SRTH +V+LF MEVPEI+NG V++K+++R+PG R K+AV + IDPVG Sbjct: 192 DRGPRLIASRTHKNLIVRLFEMEVPEIFNGTVEIKSIAREPGLRTKVAVAARQEGIDPVG 251 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 +CVGMRG R+Q +V EL EKID+V WSPD + NAL PA V +V L+ED VIV Sbjct: 252 SCVGMRGIRIQNIVNELNGEKIDVVQWSPDPKDLIANALSPAQVVEVHLNEDDHVALVIV 311 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P +QLSLAIG+ GQNVRLA++L+GW IDI Sbjct: 312 PDKQLSLAIGKEGQNVRLAAKLSGWRIDI 340 >gi|225390157|ref|ZP_03759881.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme DSM 15981] gi|225043751|gb|EEG53997.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme DSM 15981] Length = 393 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/337 (44%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I ++ +L + +S+ A ++ +G ++RV INP+T D +++ E Sbjct: 10 ELLEAMEVLEKEKNISKETLLEAIENSLLTACKNHFGKADNVRVNINPDTCDFAVYMEKE 69 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE E+ QISL A+ +P ++G V PL FGR+A Q+AK VI+QK+RE ER Sbjct: 70 VVETPEDDQLQISLVDAKMMNPKYEVGDTVQIPLDSKKFGRIATQNAKNVILQKIREEER 129 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K ++++G V+R+ NV ++LG D ++ E + E RP +RVK YI Sbjct: 130 SSLYKEYYMKEKDVMTGIVQRMLGKNVSINLGRVDAILNESEQVKGETFRPTERVKVYIL 189 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR+K+AV S+D + Sbjct: 190 EVKDTPKGPRISVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRSKIAVMSNDPN 249 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ GSRV ++V ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 250 VDPVGACVGLNGSRVNSIVNELRGEKIDIINWDENPAYLIENALSPAKVICVVADEEERE 309 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 310 AQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 346 >gi|15895075|ref|NP_348424.1| transcription elongation factor NusA [Clostridium acetobutylicum ATCC 824] gi|15024772|gb|AAK79764.1|AE007689_2 Transcription terminator NusA [Clostridium acetobutylicum ATCC 824] gi|325509213|gb|ADZ20849.1| transcription elongation factor NusA [Clostridium acetobutylicum EA 2018] Length = 353 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 149/338 (44%), Positives = 221/338 (65%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLF 63 E +Q + EK I +++ S + D++ A + Y ++ ++RV +N E G+I ++ Sbjct: 4 EFIQALKEIVEEKGISEELLFSTIEDALVAAYKKNYAKLTENVHNVRVSMNRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV+E+E+ C+ISL A+ DP + +V + P FGRVA Q+AKQV+IQ+++ Sbjct: 64 SQKKVVQEIEDSICEISLDDAKSIDPKYQLDDIVDIEITPKSFGRVAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER Y EF +K +II+GTV R + GN+++DLG + ++ E I E+ ++K Sbjct: 124 EAERSLLYDEFSEKEFDIITGTVLRKDKGNILIDLGRIEAILGPSEQIPGEDYIYNSKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K +SR+ GSR K+AV+S Sbjct: 184 LYIVEVKNTTKGAQVVISRTHPGLVKRLFELEVPEIYNGIVEIKGISREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D ++D +GACVG +G RVQ +V EL++EKIDI+ WS F+ N+L PA V V +DE Sbjct: 244 HDENVDAMGACVGPKGMRVQNIVNELKNEKIDIIKWSKLPEEFISNSLSPAKVLDVYIDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D IV QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 304 DTKSARAIVEDNQLSLAIGKEGQNVRLAAKLTEWKIDI 341 >gi|291287256|ref|YP_003504072.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809] gi|290884416|gb|ADD68116.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809] Length = 460 Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 160/419 (38%), Positives = 258/419 (61%), Gaps = 9/419 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D + EK I R+++ + +SI A G + + V ++ + G I + E Sbjct: 4 ELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILLPKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E V++ +I + A + + +G V+ P + GR A AKQ + +K+R+AE+ Sbjct: 64 VCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRDAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +F+D++GEI++G V + + N+I+++G ++ V+ + E I + GD V++ + Sbjct: 124 QVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGKTEAVLPKREMIGGDFFNRGDYVRALLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 D+R + PQ++LSRTHP+FM KLF E+PE++ GI+ VKAVSR+PG RAK+AV++++SS Sbjct: 184 DIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYTTNSS 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGAC+G++G R+ A+ ELR EKID++ WSPDS FV NA+ PA V + ED Sbjct: 244 IDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFEDEET 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS---INRQKDFNERTQFFMQ 364 IE++VP +QLSLAIG++GQNVRLA++LT W +D++ E E + R +D + + F + Sbjct: 304 IEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLKEFYE 363 Query: 365 AINVDEI------IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 N+D + H L+ G+ D+E+L+ E+A +EE AV + A +YL Sbjct: 364 MYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEVAQELECEEEKAVSLINMALDYL 422 >gi|254445533|ref|ZP_05059009.1| transcription termination factor NusA [Verrucomicrobiae bacterium DG1235] gi|198259841|gb|EDY84149.1| transcription termination factor NusA [Verrucomicrobiae bacterium DG1235] Length = 419 Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 159/422 (37%), Positives = 262/422 (62%), Gaps = 13/422 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK I R+ ++S + +I+ AA ++++ I+P G ++ + LL+ Sbjct: 4 EILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWALLD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +ISL+ AR D ++IG V + P GR+A Q+A+Q I+Q++R+ E+ Sbjct: 64 VVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +R Y +FKD+VG+I+SG V+R E G++IVDLG ++ ++ + + E+ PG+R++ + Sbjct: 124 ERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGKAEAMMPSRDQVPGEDYSPGERIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + RGP+++L+R++P+F+++LF +EV EI +G V+++A SR+PG R K+AV SSD Sbjct: 184 KIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTSSDPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+++V EL EKIDI+ + D + AL+PAI V++DE R Sbjct: 244 VDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDERSRR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 I + V ++ L++AIGR+GQN RL S+L GW IDI+ EE ++ + E Q Q Sbjct: 304 ISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETKQAEAAQGLNQIEG 363 Query: 368 VDEIIAHLLVAEG------FADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +D A LV G F DVEE V++ GF E A +I + +++ + Sbjct: 364 IDSATAERLVNNGLISPELFLDVEEDDLVEM-------GFSAEEAADIIAKVTTFIQSQN 416 Query: 422 IT 423 I+ Sbjct: 417 IS 418 >gi|303229675|ref|ZP_07316463.1| transcription termination factor NusA [Veillonella atypica ACS-134-V-Col7a] gi|303232179|ref|ZP_07318882.1| transcription termination factor NusA [Veillonella atypica ACS-049-V-Sch6] gi|302513285|gb|EFL55324.1| transcription termination factor NusA [Veillonella atypica ACS-049-V-Sch6] gi|302515800|gb|EFL57754.1| transcription termination factor NusA [Veillonella atypica ACS-134-V-Col7a] Length = 361 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 153/349 (43%), Positives = 222/349 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D VE+N ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPHSNPDAYVELNRETGAYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR D +IG +V + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVEFPETEISLLDARKIDKRYEIGDIVEADVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVYINLGKTEAILPPTEQIGTETYHEGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D S Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDES 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 IDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + N F Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAENPFTGFT 352 >gi|299144046|ref|ZP_07037126.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518531|gb|EFI42270.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 379 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/325 (45%), Positives = 224/325 (68%), Gaps = 2/325 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYT 76 EK I ++V+ + ++ + R +GT +++V+IN ++G+I++F L ++V +V E+ Sbjct: 15 EKGISKEVIFEALESALVSSYRKNFGTSQNVQVDINKDSGEINVFALKDIVADVDFEDEN 74 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 QI + A+D D ++G V S+ + P +FGR+A Q+AKQV+IQ++++AERD + +F D Sbjct: 75 LQIPISKAKDIDAKFELGDVYSEKIKPANFGRIAAQTAKQVVIQRIKDAERDIIFEDFTD 134 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 + EII+G V+RV YGNV DLG ++ ++ E I E R GDR+K + +V++ +GP Sbjct: 135 RENEIITGQVQRVSYGNVYFDLGKTEAILPVAEQIKGEVYRQGDRLKLLLLEVKKTTKGP 194 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 Q++LSR+HP + +LF +EVPEI GIV+V ++SR+ GSR K+AVFS + +DP+GACVG Sbjct: 195 QIILSRSHPNLVKRLFELEVPEISEGIVEVYSISREAGSRTKIAVFSRNEDVDPLGACVG 254 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +GSRV+A+V EL DEK+DIV++ F+ NAL P+ V KV +E V+VP Q Sbjct: 255 YKGSRVKAIVDELHDEKVDIVIYEKQIDKFIANALSPSKVEKVFANEKEKSALVVVPDYQ 314 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI 341 LSLAIG+ GQN RLA++LT W IDI Sbjct: 315 LSLAIGKEGQNARLAAKLTNWKIDI 339 >gi|222151100|ref|YP_002560254.1| transcription termination-antitermination factor [Macrococcus caseolyticus JCSC5402] gi|222120223|dbj|BAH17558.1| transcription termination-antitermination factor [Macrococcus caseolyticus JCSC5402] Length = 353 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 152/337 (45%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EKSI R+V++ + ++ A + Y + +++RVE+N + G ++ Sbjct: 5 ELLNAIDFLEKEKSIPREVLIETIEAALITAYKKNYNSANNVRVELNMDNGAYRVYSRKN 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N ++SL+ A +P+ +IG + + + P DFGRV+ Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVMNSREEVSLETALLSNPAYEIGDIYEEDVTPKDFGRVSAQAAKQAVLQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF DK +I++G + RV++ V V LG ++ V+ E E RP +R+K Y+ Sbjct: 125 GILYNEFIDKEDDIMTGIIDRVDHRYVYVTLGKTEAVLSEAERSPNEVYRPTERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFDGTVVVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D+ TFV NAL P+ V V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVEWSADTKTFVKNALSPSQVVDVLVDEANQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG++GQN RLA++LTGW IDI +E Sbjct: 305 TTVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSE 341 >gi|210612465|ref|ZP_03289323.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787] gi|210151573|gb|EEA82580.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787] Length = 373 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 150/337 (44%), Positives = 226/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F Sbjct: 4 ELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVVMNRETCDYSVFAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K YI Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K++SR+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVAEVKEGIVEIKSISREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVSELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|284048695|ref|YP_003399034.1| transcription termination factor NusA [Acidaminococcus fermentans DSM 20731] gi|283952916|gb|ADB47719.1| transcription termination factor NusA [Acidaminococcus fermentans DSM 20731] Length = 362 Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 147/329 (44%), Positives = 223/329 (67%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A EKSI DV+ S + +++ A + YG+ ++RV ++ ETG+I ++ +VEEV + Sbjct: 12 LAKEKSISPDVLYSAVEEALITAYKKNYGSAQNVRVSMHKETGEIHVYARKNIVEEVTDP 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 T +ISL+ A+ + G ++ + P +FGR+A Q+AKQVI+Q++REAER Y + Sbjct: 72 TTEISLEDAQKMNAHYQAGDILETEVTPKNFGRIAAQNAKQVIVQRIREAERGMVYERYS 131 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 D+ +I++GTV+R+E NV +DLG ++G++ +E I E R+K Y+ +V++ +G Sbjct: 132 DRENDIVTGTVQRIEGRNVFIDLGTAEGLLLPNEQIPHETYDYHQRLKCYVVEVKKTTKG 191 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++ S+DPVGACV Sbjct: 192 PQIILSRTHPGLLKRLFELEVSEIQDGTVIIDSVAREPGMRSKIAVHSTNPSVDPVGACV 251 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G +G RV+ +V ELR EKIDIV +S D +V NAL P+ V D+D V+VP Sbjct: 252 GPKGMRVRTIVDELRGEKIDIVKYSEDPEEYVANALSPSKVVSARADKDEKICRVVVPDY 311 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 312 QLSLAIGKEGQNARLAAKLTGWKIDIKSE 340 >gi|153855238|ref|ZP_01996404.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814] gi|149752237|gb|EDM62168.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814] Length = 399 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 226/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ +N ET + L+ Sbjct: 4 ELLEALNILEKEKDISKETLLDAIENSLMNACKNHFGKTDNIKLIMNKETCEYQLYAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVEDKLEQISLEDAKEIDSKFELGDIVHIPIESKSFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K YI Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGIVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNE 340 >gi|197303044|ref|ZP_03168092.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC 29176] gi|197297899|gb|EDY32451.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC 29176] Length = 397 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 229/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + EK+I +DV++ + +S+ A ++ +GT +I++ ++ ET D S+F E Sbjct: 4 ELLEALTILEKEKNISKDVMMEAIENSLLSACKNHFGTSDNIKIVMDRETCDYSVFAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A +PS+ IG + P+ +FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVFDPAIEISLEDAEKINPSLHIGDIAQVPVYSKEFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ P +R+K YI Sbjct: 124 KVVFDQYFEKEKDIVTGIVQRYVGKNISINLGRADAMLTENEQVKGEHFEPTERIKLYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D + Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENALSPAKVISVMADPDAKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|51892657|ref|YP_075348.1| transcription elongation factor NusA [Symbiobacterium thermophilum IAM 14863] gi|51856346|dbj|BAD40504.1| transcriptional termination-antitermination factor [Symbiobacterium thermophilum IAM 14863] Length = 360 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 151/344 (43%), Positives = 229/344 (66%), Gaps = 3/344 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L+ D + E+ I R+V++ + ++ A R +G+ ++RV + +TG+ ++ Sbjct: 2 KAEILEALDDLVRERGISREVLIEAIEAALISAYRRNFGSAQNVRVFFDDKTGEYRVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV + Q+SL+ AR ++PS+ +G V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 KEIVEEVTDPRLQVSLEEARMKNPSLQLGDVFEVEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV---IRRDETISRENLRPGDRV 182 ER Y E+ + GEI++G V+R + V L + GV + +E I E R+ Sbjct: 122 ERGMIYEEYSSREGEIVTGLVQRQDPKTRTVYLELARGVEAVLTANEQIPGERYVENQRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+Y+ +V+R +GP + +SRTHP + +LF +EVPEI++G V++K ++R+ GSR+K+AV Sbjct: 182 KAYVIEVKRTTKGPAIAVSRTHPGLLKRLFELEVPEIHDGTVEIKGIAREAGSRSKIAVM 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D ++DPVGACVG +G RVQ +V EL+ EKID+V WSPD FV AL PA VT+VV D Sbjct: 242 ARDPNVDPVGACVGQKGQRVQNIVDELQGEKIDVVEWSPDPEVFVAKALSPAKVTQVVCD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 E+ VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 EESRIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 345 >gi|327441013|dbj|BAK17378.1| transcription elongation factor [Solibacillus silvestris StLB046] Length = 375 Score = 296 bits (758), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 227/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ +K I RDV++ + ++ A + + ++RV++N +TG + ++ + Sbjct: 4 ELLDALTALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLQTGSMVVYSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +I+L+ A+ + + +IG VV + + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLEIALEDAKFINAAYEIGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D+ +I++G ++R + N+ V +G + + +E I E +P R++ YI Sbjct: 124 GLIYEEYVDREDDIVTGVIERQDARNIYVSIGKVEAALPVNEQIQGEVYKPTSRIRVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY+G V++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYDGTVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|290969147|ref|ZP_06560672.1| transcription termination factor NusA [Megasphaera genomosp. type_1 str. 28L] gi|290780653|gb|EFD93256.1| transcription termination factor NusA [Megasphaera genomosp. type_1 str. 28L] Length = 372 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 161/353 (45%), Positives = 229/353 (64%), Gaps = 12/353 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY------GTMSDIRVEINPETGDIS 61 ELL ++ EK + DV+ DS++ + Y M+D VE+N ETGD Sbjct: 4 ELLNAIAFLSKEKGVSPDVI----CDSLEAVLITAYKKEPEANPMAD--VELNRETGDYR 57 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + VV EV N +I L AR ++ + +IG +V + P +FGR+A Q+AKQV+IQ+ Sbjct: 58 IVAAKTVVAEVTNENEEIVLAEARKQNAAYEIGDMVKVDVTPHNFGRIAAQAAKQVMIQR 117 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER Y EF ++ +II+G V+R+E V VDLG ++ V+ E I+ E G R Sbjct: 118 LREAERSIVYDEFYNRTDDIITGLVQRIENKIVYVDLGKAEAVLPVSEQIAEEQYYVGQR 177 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +VR+ +G Q+L+SRTHP + +LF +EVPEIY+G+V++K+V+R+PG R+K+AV Sbjct: 178 LKCYVVEVRKTTKGAQILVSRTHPGLLKRLFELEVPEIYDGVVELKSVAREPGRRSKIAV 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D+++D VGACVG +G RVQ +VTEL++EKIDIV W D A ++ NAL PA V V + Sbjct: 238 FSRDTNVDCVGACVGPKGVRVQNIVTELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 DE+ VIVP QLSLAIG+ GQN RLA++LT W IDI +E + KD Sbjct: 298 DEENKMSAVIVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAKDGNSKD 350 >gi|238019442|ref|ZP_04599868.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748] gi|237864141|gb|EEP65431.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748] Length = 358 Score = 296 bits (757), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETGD + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGDYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLEARKIDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV ++LG ++ ++ E I+ E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIATETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 VDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LT W IDI +E Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSE 340 >gi|319892283|ref|YP_004149158.1| Transcription termination protein NusA [Staphylococcus pseudintermedius HKU10-03] gi|317161979|gb|ADV05522.1| Transcription termination protein NusA [Staphylococcus pseudintermedius HKU10-03] Length = 392 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+ Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|289434603|ref|YP_003464475.1| transcription termination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170847|emb|CBH27389.1| transcription termination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638097|gb|EFS03364.1| transcription termination factor NusA [Listeria seeligeri FSL S4-171] Length = 372 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++S+ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTSNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|332976856|gb|EGK13681.1| N utilization substance protein A [Desmospora sp. 8437] Length = 377 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/339 (44%), Positives = 223/339 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + + EK I ++V++ + ++ + + + ++RV+I+ +TG + +F Sbjct: 4 EFIDALNQLEKEKGISKEVLIEAIEAALISGYKRNFHSAQNVRVDIDRDTGRVRVFARKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A + +PS ++ +V + P DFGR+A Q+AKQV+ Q++REAER Sbjct: 64 VVEEVTDPRLEISLEAATEINPSFELDDIVEIEVTPADFGRIAAQTAKQVVTQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + +DLG + ++ ET+ E + DRVK+YI Sbjct: 124 SIIYEEFVDREADIVTGVVQRADSRHYYIDLGRVEALLPFAETMPGERFKHNDRVKAYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQV +SRTHP + +LF +EVPEIY GIV++++V+R+ G R+K+AV S D Sbjct: 184 RVEKSTKGPQVFVSRTHPGLLKRLFELEVPEIYEGIVEIRSVAREAGHRSKIAVISRDEQ 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG RVQ VV ELR EKIDIV WS + FV NAL P+ V +V + E Sbjct: 244 VDPVGACVGHRGMRVQTVVNELRGEKIDIVRWSDEPVEFVSNALSPSKVVRVDIREAEKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E Sbjct: 304 AQVVVPDHQLSLAIGKEGQNARLAAKLTGWKIDIKSESE 342 >gi|217964531|ref|YP_002350209.1| transcription termination factor NusA [Listeria monocytogenes HCC23] gi|290893567|ref|ZP_06556550.1| N utilization substance protein A [Listeria monocytogenes FSL J2-071] gi|217333801|gb|ACK39595.1| transcription termination factor NusA [Listeria monocytogenes HCC23] gi|290556912|gb|EFD90443.1| N utilization substance protein A [Listeria monocytogenes FSL J2-071] gi|307570903|emb|CAR84082.1| transcription termination factor [Listeria monocytogenes L99] gi|313619131|gb|EFR90921.1| transcription termination factor NusA [Listeria innocua FSL S4-378] Length = 372 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|159897005|ref|YP_001543252.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|159890044|gb|ABX03124.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 444 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/330 (45%), Positives = 222/330 (67%), Gaps = 4/330 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I R+ V V+ ++ A R G+ D+++E+ P TG I ++ +VV+EV Sbjct: 12 IAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIRVYAEKQVVDEV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I ++ AR+ ++IG V P DFGR+A Q+AKQV++Q+++E ERD Y Sbjct: 72 MDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQRIKEVERDHIYG 131 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ D+ GEI++ TV+R GNVI+++G ++ ++ + E IS +N R G R+K Y+ + RR+ Sbjct: 132 EYFDREGEIVTATVQRTAKGNVILEVGRAEAILPQKEQISHDNYRHGQRLKVYLMEARRD 191 Query: 193 Q-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 RGP+++ SRTH + +LF MEVPEIYNG V++K+++R+PG R+K+AV + IDPV Sbjct: 192 DPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKVAVHARQEGIDPV 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G+CVGMRG R+Q +V EL EKID+V W D F+ NAL PA V +V LDE V+ Sbjct: 252 GSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEVHLDEGEKTATVV 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VP +QLSLAIG+ GQNVRLA++L GW IDI Sbjct: 312 VPDKQLSLAIGKEGQNVRLAAKLVGWRIDI 341 >gi|254824619|ref|ZP_05229620.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-194] gi|254852628|ref|ZP_05241976.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-503] gi|254932363|ref|ZP_05265722.1| transcription elongation factor NusA [Listeria monocytogenes HPB2262] gi|255521785|ref|ZP_05389022.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-175] gi|300765438|ref|ZP_07075420.1| N utilization substance protein A [Listeria monocytogenes FSL N1-017] gi|258605943|gb|EEW18551.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-503] gi|293583919|gb|EFF95951.1| transcription elongation factor NusA [Listeria monocytogenes HPB2262] gi|293593857|gb|EFG01618.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-194] gi|300513875|gb|EFK40940.1| N utilization substance protein A [Listeria monocytogenes FSL N1-017] gi|328468605|gb|EGF39605.1| transcription elongation factor NusA [Listeria monocytogenes 1816] gi|328475044|gb|EGF45832.1| transcription elongation factor NusA [Listeria monocytogenes 220] gi|332311765|gb|EGJ24860.1| Transcription elongation protein nusA [Listeria monocytogenes str. Scott A] Length = 372 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|282848827|ref|ZP_06258220.1| transcription termination factor NusA [Veillonella parvula ATCC 17745] gi|294791739|ref|ZP_06756887.1| transcription termination factor NusA [Veillonella sp. 6_1_27] gi|294793600|ref|ZP_06758737.1| transcription termination factor NusA [Veillonella sp. 3_1_44] gi|282581481|gb|EFB86871.1| transcription termination factor NusA [Veillonella parvula ATCC 17745] gi|294455170|gb|EFG23542.1| transcription termination factor NusA [Veillonella sp. 3_1_44] gi|294456969|gb|EFG25331.1| transcription termination factor NusA [Veillonella sp. 6_1_27] Length = 358 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 IDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LT W IDI +E Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSE 340 >gi|46907548|ref|YP_013937.1| transcription elongation factor NusA [Listeria monocytogenes serotype 4b str. F2365] gi|46880816|gb|AAT04114.1| N utilization substance protein A [Listeria monocytogenes serotype 4b str. F2365] Length = 372 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|254669623|emb|CBA03666.1| N utilization substance protein A [Neisseria meningitidis alpha153] Length = 358 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 164/337 (48%), Positives = 237/337 (70%), Gaps = 12/337 (3%) Query: 142 ISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG---- 195 +SGTVKRVE +IV++ G D +I RD+ I REN R GDR+++ +R E+ G Sbjct: 1 MSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALF--LRVEEIGNTGR 58 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+ Sbjct: 59 KQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCI 118 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV ++ Sbjct: 119 GVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAED 178 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNERTQFFMQAINVDEIIAH 374 QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D R + FM +NVDE A Sbjct: 179 QLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR-RLFMDHLNVDEETAD 237 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS 434 +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS Sbjct: 238 VLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VS 295 Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 296 DDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 332 >gi|239626256|ref|ZP_04669287.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520486|gb|EEQ60352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 401 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++ Sbjct: 10 ELLEAMEVLEKEKNIAKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAEKT 69 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VE+ +ISL A+ P D+G V PL FGR+A Q+AK VI+QK+RE ER Sbjct: 70 VVEQVEDDIMEISLADAKMLSPKYDLGDTVQIPLDSKKFGRIATQNAKNVILQKIREEER 129 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K ++++G V+R NV ++LG D ++ E + E RP +R+K Y+ Sbjct: 130 KVLYNEYYTKEKDVMTGIVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERIKVYVL 189 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+DS+ Sbjct: 190 EVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSNDSN 249 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 250 VDPVGACVGLNGARVNAIVSELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEEERE 309 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 310 AQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 346 >gi|16803362|ref|NP_464847.1| transcription elongation factor NusA [Listeria monocytogenes EGD-e] gi|224501735|ref|ZP_03670042.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-561] gi|16410738|emb|CAC99400.1| nusA [Listeria monocytogenes EGD-e] Length = 372 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|323464620|gb|ADX76773.1| transcription termination factor NusA [Staphylococcus pseudintermedius ED99] Length = 392 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+ Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|16800427|ref|NP_470695.1| transcription elongation factor NusA [Listeria innocua Clip11262] gi|16413832|emb|CAC96590.1| nusA [Listeria innocua Clip11262] Length = 372 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|47095907|ref|ZP_00233510.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a F6854] gi|224499904|ref|ZP_03668253.1| transcription elongation factor NusA [Listeria monocytogenes Finland 1988] gi|254828682|ref|ZP_05233369.1| transcription elongation factor NusA [Listeria monocytogenes FSL N3-165] gi|254829921|ref|ZP_05234576.1| transcription elongation factor NusA [Listeria monocytogenes 10403S] gi|254898513|ref|ZP_05258437.1| transcription elongation factor NusA [Listeria monocytogenes J0161] gi|254911996|ref|ZP_05262008.1| N utilization substance protein A [Listeria monocytogenes J2818] gi|254936323|ref|ZP_05268020.1| transcription elongation factor NusA [Listeria monocytogenes F6900] gi|284801707|ref|YP_003413572.1| transcription elongation factor NusA [Listeria monocytogenes 08-5578] gi|284994849|ref|YP_003416617.1| transcription elongation factor NusA [Listeria monocytogenes 08-5923] gi|47015653|gb|EAL06583.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a F6854] gi|258601086|gb|EEW14411.1| transcription elongation factor NusA [Listeria monocytogenes FSL N3-165] gi|258608913|gb|EEW21521.1| transcription elongation factor NusA [Listeria monocytogenes F6900] gi|284057269|gb|ADB68210.1| transcription elongation factor NusA [Listeria monocytogenes 08-5578] gi|284060316|gb|ADB71255.1| transcription elongation factor NusA [Listeria monocytogenes 08-5923] gi|293589960|gb|EFF98294.1| N utilization substance protein A [Listeria monocytogenes J2818] gi|313623922|gb|EFR94030.1| transcription termination factor NusA [Listeria innocua FSL J1-023] Length = 372 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|116872753|ref|YP_849534.1| transcription elongation factor NusA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741631|emb|CAK20755.1| N utilization substance protein A, transcription factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 372 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|226223923|ref|YP_002758030.1| N utilization substance protein A (NusA protein) [Listeria monocytogenes Clip81459] gi|225876385|emb|CAS05094.1| Putative N utilization substance protein A (NusA protein) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 372 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKVNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|297584078|ref|YP_003699858.1| NusA antitermination factor [Bacillus selenitireducens MLS10] gi|297142535|gb|ADH99292.1| NusA antitermination factor [Bacillus selenitireducens MLS10] Length = 396 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 226/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + ++ +K ID++++L + ++ + + + ++RV+I+ E+G I +F Sbjct: 4 EFMDALASIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRESGQIRVFARKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +IS + A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDARLEISQEEAKGINPHYEVDDIVEIEVTPRDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E R DR+K++I Sbjct: 124 GIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPLNEQMPNETYRHNDRIKAFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+++SR+HP + +LF +EVPEIY+G V+VK+VSR+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIMISRSHPGLLKRLFELEVPEIYDGTVEVKSVSREAGERSKISVHAEDED 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+ Sbjct: 244 IDPVGSCVGQRGQRVQTIVDELKGEKIDIVRWSEDPKVYVSNALSPSKVVDVLVNEEQKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|308173623|ref|YP_003920328.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens DSM 7] gi|307606487|emb|CBI42858.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens DSM 7] gi|328553445|gb|AEB23937.1| transcription elongation factor NusA [Bacillus amyloliquefaciens TA208] gi|328911764|gb|AEB63360.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens LL3] Length = 373 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 150/337 (44%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|319649523|ref|ZP_08003679.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2] gi|317398685|gb|EFV79367.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2] Length = 385 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I RDV++ + ++ A R + ++R+++N G + +F E Sbjct: 4 ELLDALTLLEKEKGISRDVIIEAIEAALVSAYRRNFNQAQNVRIDLNLGNGTMRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVFDPRLEISVEDAQKINPNYQVEDVVEMEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I Sbjct: 124 GIIYSEFIDREEDIMTGIVQRTDPKFIYVSLGKIEAILPANEQMPNERYQPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVAREAGDRSKISVHSDNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WS D FV NAL P+ V V+++ED Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSSDPVVFVANALSPSKVLDVIVNEDDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|315282175|ref|ZP_07870640.1| transcription termination factor NusA [Listeria marthii FSL S4-120] gi|313614179|gb|EFR87858.1| transcription termination factor NusA [Listeria marthii FSL S4-120] Length = 372 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSDDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|313633405|gb|EFS00241.1| transcription termination factor NusA [Listeria seeligeri FSL N1-067] Length = 372 Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|313893742|ref|ZP_07827309.1| transcription termination factor NusA [Veillonella sp. oral taxon 158 str. F0412] gi|313441756|gb|EFR60181.1| transcription termination factor NusA [Veillonella sp. oral taxon 158 str. F0412] Length = 358 Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 150/337 (44%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 VDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LT W IDI +E Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSE 340 >gi|154506276|ref|ZP_02043014.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149] gi|153793415|gb|EDN75835.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149] Length = 397 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/337 (43%), Positives = 228/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + EK+I RD ++ + +S+ A ++ +GT +I+V +N ET D +++ E Sbjct: 4 ELMEALTILEKEKNISRDTMMDAIENSLISACKNHFGTSDNIKVIMNRETCDYAVYAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +I+L+ A + D ++ IG V P+ +FGR+A +AK +I+QK+RE ER Sbjct: 64 VVEEVFDPAIEITLEDAEEIDSALQIGDVCQVPVQSKEFGRIATMNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R N+ V+LG +D ++ +E + E +P DR+K YI Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNISVNLGKADAMLTENEQVKGEVFKPTDRIKLYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D + Sbjct: 184 EVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSNDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAVVEELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDEKV 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|288556945|ref|YP_003428880.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4] gi|288548105|gb|ADC51988.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4] Length = 378 Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 224/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + EK I ++V++ + ++ + + ++RV++N + G I +F Sbjct: 4 EFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFSQAQNVRVDVNRDNGSIRVFARKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 IVEEVFDARLEISLDEAKSINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E + DR+K++I Sbjct: 124 GIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALLPLNEQMPNETYKHNDRIKAFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + + Sbjct: 184 KVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAENPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 244 VDPVGSCVGPRGQRVQTIVDELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|226313023|ref|YP_002772917.1| transcription elongation factor NusA [Brevibacillus brevis NBRC 100599] gi|226095971|dbj|BAH44413.1| transcription elongation protein NusA [Brevibacillus brevis NBRC 100599] Length = 363 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 149/341 (43%), Positives = 232/341 (68%), Gaps = 4/341 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ +A+ EK I +DV++ + ++ + + + ++RV++N +G + ++ Sbjct: 4 DFIEALEAIEREKGITKDVLIEAIEAALISGYKRNFNSAQNVRVDVNRHSGMVRVYARKS 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +IS + A++ DP+ + +V + P DFGR+A Q+AKQV+ Q++REAER Sbjct: 64 VVEEVLDPRLEISQEAAQEIDPNFRLEDIVEIEVTPRDFGRIAAQTAKQVVTQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF ++ +I++G V+R++ N +DLG ++ V+ E + E+ + DRVK+YI Sbjct: 124 GLIYSEFIEREDDIVTGVVQRMDARNYYIDLGKAEAVMPITEKMPSEDFKSQDRVKAYII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+++SRTHP + +LF +EVPEIY+G+V++K+V+R+ G R+K+AV S ++ Sbjct: 184 KVEKTTKGPQIVVSRTHPGLLKRLFELEVPEIYDGVVEIKSVAREAGDRSKIAVHSINAD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDV 305 +DPVGACVG +G RVQ +VTEL+ EKIDIV WS D A +V NAL PA V V ++ E V Sbjct: 244 VDPVGACVGPKGMRVQTIVTELKGEKIDIVRWSEDPAEYVANALSPAKVLHVEVNVAEKV 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TR--VIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESQ 342 >gi|154686077|ref|YP_001421238.1| transcription elongation factor NusA [Bacillus amyloliquefaciens FZB42] gi|154351928|gb|ABS74007.1| NusA [Bacillus amyloliquefaciens FZB42] Length = 373 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 150/337 (44%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V++ E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVSEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|257875536|ref|ZP_05655189.1| transcription termination factor NusA [Enterococcus casseliflavus EC20] gi|257809702|gb|EEV38522.1| transcription termination factor NusA [Enterococcus casseliflavus EC20] Length = 404 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 146/338 (43%), Positives = 224/338 (66%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQA+V EL+ E +DIV W+ DSA F+ NAL PA V+ V+ D D + Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDSAIFIANALNPAEVSDVIFDVDNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSE 341 >gi|325265380|ref|ZP_08132104.1| transcription termination factor NusA [Clostridium sp. D5] gi|324029381|gb|EGB90672.1| transcription termination factor NusA [Clostridium sp. D5] Length = 407 Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 228/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I +D ++ + +S+ A ++ +GT +I+V ++ ET D +++ E Sbjct: 4 ELLEALNILEQEKNISKDTMMDAIENSLISACKNHFGTAENIKVIMDRETCDYAVYAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A D ++ IG + P+ FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVFDPALEISLEDAEQIDSALQIGDIAQIPIESKSFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGRNISINLGRADAMLTENEQVKGEVFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D + Sbjct: 184 EVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSNDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAVVNELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|291550231|emb|CBL26493.1| transcription termination factor NusA [Ruminococcus torques L2-14] Length = 395 Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 228/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ D + EK+I +DV+L + +S+ A ++ +GT +I++ ++ T D S++ E Sbjct: 4 ELLEALDILEKEKNISKDVMLEAIENSLLSACKNHFGTSDNIKIVMDRNTCDYSVYAERE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A +P++ IG + L +FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVFDPAIEISLEDAEKINPALHIGDIAQVELHSKEFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ +K +I++G V+R N+ V+LG +D ++ +E + E+ P +R+K YI Sbjct: 124 KAVFDQYFEKEKDIVTGIVQRYIGKNISVNLGKADAILTENEQVKGEHFEPTERIKLYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D + Sbjct: 184 EVKNTPKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRTKMAVWSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAVVKELRGEKIDIINWDENPALLIENALSPAKVISVMADPDEKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AGVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|313673261|ref|YP_004051372.1| nusa antitermination factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940017|gb|ADR19209.1| NusA antitermination factor [Calditerrivibrio nitroreducens DSM 19672] Length = 428 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/423 (38%), Positives = 257/423 (60%), Gaps = 11/423 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L++AD + EK R ++ + + D+I A G + VEI+ E ++ E Sbjct: 4 EILKVADEIVREKGFSRKIISNALRDAIYTALVKKLGKYGEPVVEIDLEKNIFNISVPKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V++ +I L A D +G V+ P+ + GR + K + +K+R+AE+ Sbjct: 64 VVEDVDSVWHEILLDDALKIDKDAYLGKVIMVPVTIEEIGRQLATTVKTRLFEKLRDAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y EF+ KVGEII+G V + + V V +G ++ ++ + E I + GD +++ + Sbjct: 124 DIVYSEFQGKVGEIITGIVLKSDKEGVTVSIGKTEAILPKKEMIPGDYYTRGDYIRALLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +++ + PQ++LSRTHPQF+ KLF E+PE+++G+V+VK+V+R+PG RAK+AV+S+ S+ Sbjct: 184 EIKLIKGWPQLVLSRTHPQFLKKLFESEIPEVFDGLVEVKSVAREPGDRAKVAVYSTSSN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGAC+G++G R+ A+ EL+ EKID++ WSPD FV ++ PA V + ED Sbjct: 244 IDPVGACIGLKGVRINAISNELKGEKIDVIQWSPDPVKFVCASISPAEVLLTNIFEDEST 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ----FFM 363 IEV+VP +QLSLAIG+RGQNV+LAS LTGW +DI+ E E R++ E+ Q F+M Sbjct: 304 IEVVVPDDQLSLAIGKRGQNVKLASILTGWKLDILKESEYKELRKQRLIEQEQEMKEFYM 363 Query: 364 ------QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + DE+I+ LVA G D+E+LA + I+ I E A+ I A +YL Sbjct: 364 IYSLDNLTVLTDEMISK-LVAAGVTDLEKLADTDVDRISEILNISHEDAINILNAALDYL 422 Query: 418 EGI 420 + Sbjct: 423 ASV 425 >gi|171913143|ref|ZP_02928613.1| transcription elongation factor NusA [Verrucomicrobium spinosum DSM 4136] Length = 417 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/403 (38%), Positives = 245/403 (60%), Gaps = 1/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + EK IDR ++ + ++ A++ G ++R+EI+P+ G I F L Sbjct: 4 ELKALFEYYEKEKGIDRSKMVDALQSALLAASKKSIGPARELRIEIDPDKGSIRAFARLL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + VEN Q+S+K AR G V + P DFGR+A Q+AKQ +Q++REAE+ Sbjct: 64 VSDTVENPFEQLSVKHARKLKADAQPGDEVDIEVTPKDFGRIAAQTAKQTWMQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EFKD+ G+++SGT++R + +V+VDLG +G++ E + E+ GDR++ Y+ Sbjct: 124 ANLYDEFKDRTGDVVSGTIRRFDKSDVVVDLGKFEGIMTSRERVPTEDYTSGDRMRFYVK 183 Query: 188 DVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + RGP+++LSR+HP F+ +LF EV EI + V++ +++R+ G R K+AV S+D Sbjct: 184 AVEKSTSRGPEIILSRSHPNFVRRLFEFEVSEIADRTVEIVSIAREAGYRTKVAVHSADD 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RG+RV+ +V EL +EK+DI+ WS D A F AL+P + + +DED Sbjct: 244 KVDPVGACVGLRGARVKNIVRELNNEKVDIIRWSKDVAEFTKEALKPIKILSIKVDEDHK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 R+ + V +E+LS AIGR+GQN RL S+L G+ + I +E + + E + Sbjct: 304 RVLLTVSEEELSKAIGRKGQNARLTSRLIGYDLVIEKDEHAAKVFESHVEEAVHRIAADL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++D IA LV EG +D+ A + +IASI D E A +I Sbjct: 364 DIDRNIARKLVGEGLSDLSNFADADVDDIASIVDGDTELAQQI 406 >gi|323485570|ref|ZP_08090915.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum WAL-14163] gi|323692918|ref|ZP_08107141.1| transcription termination factor NusA [Clostridium symbiosum WAL-14673] gi|323401109|gb|EGA93462.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum WAL-14163] gi|323503025|gb|EGB18864.1| transcription termination factor NusA [Clostridium symbiosum WAL-14673] Length = 412 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 143/337 (42%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + + E +I +D++L + +S+ A ++ +G +++V IN ETGD S++ E Sbjct: 4 ELIEALNVLEKENNISKDILLEAIENSLLTACKNHFGKADNVKVTINRETGDFSVYAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A+ + D+G +V + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVESVEDPMLQISLAEAKMMNGRYDLGDIVHVQINSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ K ++++G V+R N+ +DLG D ++ E + E +P +R+K Y+ Sbjct: 124 KALFNDWYCKEKDVVTGIVQRYVNRNICIDLGKIDAILNESEQVKGEVFKPTERIKLYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV+S++ Sbjct: 184 EVKDTNKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVYSNNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V V DED Sbjct: 244 VDPVGACVGLNGARVNAIVSELRGEKIDIINWDENPAYLIENALSPAKVIFVAADEDARE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|295110274|emb|CBL24227.1| transcription termination factor NusA [Ruminococcus obeum A2-162] Length = 389 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++ E Sbjct: 4 ELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAERE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E VE+ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VKEFVEDPAMEISLVEAQKLNTNAELGDIIKVEIHSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ E+++G V+RV NV V+LG +DGV+ +E + E +P +R+K YI Sbjct: 124 KVLYDQYYGMEKEVVTGIVQRVMGKNVSVNLGKADGVLSENEQVKGEEFKPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++LLSRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILLSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|311068183|ref|YP_003973106.1| transcription elongation factor NusA [Bacillus atrophaeus 1942] gi|310868700|gb|ADP32175.1| transcription elongation factor NusA [Bacillus atrophaeus 1942] Length = 372 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A DP+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISIDDAHAIDPNYVVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSNDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 340 >gi|322436508|ref|YP_004218720.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321164235|gb|ADW69940.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 534 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/420 (40%), Positives = 250/420 (59%), Gaps = 14/420 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF---RL 65 L Q +A++ EK I+ VV+S + D+I A R Y T ++R E++ +TG+I + + Sbjct: 5 LYQSIEALSREKGIEPAVVVSAIEDAIALATRKYYKTQENMRAEMDKDTGEIRAYVFKTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGG---VVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +E EE+ + Q++L+ AR P +++GG D P GR+A Q AKQVI QKV Sbjct: 65 VETPEEIVDEINQLALEPARALAPEVEVGGELRFYKDTTP---LGRIAAQMAKQVIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 REAERD + E+ + GE+++ TVKR+E +VI DLG ++ + + E E G+RV Sbjct: 122 REAERDTVFNEYNHRAGEVLNATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFAVGERV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV Sbjct: 182 RVVLLRVDRAAKGPQVIVSRAAPALVQNLFQSEVPEIYDGTVSIRAIAREAGERTKIAVM 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 S D +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + Sbjct: 242 SRDKDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSIT 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER--- 358 D +IEVIV QLSLAIG++GQNVRLA++L W IDI +EEE ++ Sbjct: 302 DLAEKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMSGG 361 Query: 359 -TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T Q + E I L+A G VE +A + E+ I G E+T +I R Y Sbjct: 362 PTTPIEQVTELGEQILEKLIAAGITTVEAVADMTAEELEQIPGIGEKTIEKISVAVRHYF 421 >gi|303256975|ref|ZP_07342989.1| transcription termination factor NusA [Burkholderiales bacterium 1_1_47] gi|330999163|ref|ZP_08322882.1| transcription termination factor NusA [Parasutterella excrementihominis YIT 11859] gi|302860466|gb|EFL83543.1| transcription termination factor NusA [Burkholderiales bacterium 1_1_47] gi|329575363|gb|EGG56907.1| transcription termination factor NusA [Parasutterella excrementihominis YIT 11859] Length = 499 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/476 (35%), Positives = 287/476 (60%), Gaps = 14/476 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--LYGTMSDIRVEINPETGDISLFRL 65 +LL + + +A+EK++D+ VVL+ + ++ A + G +DI V+++P TGD ++R Sbjct: 4 DLLTMVEVLAHEKNVDQSVVLAALESALASAVKKAEFPGEDADIVVKVDPTTGDQKVWRQ 63 Query: 66 LEVV------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF-GRVAVQSAKQVI 118 VV +E + Q K +++G V PLP ++ GR AKQVI Sbjct: 64 WLVVPDEQGLQEPDRQILQWEAKEDYSDQGEMNVGDYVRKPLPDVNVTGRRFATDAKQVI 123 Query: 119 IQKVREAERDRQYLEFKDKVGEI--ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 IQ++REAER++ EF ++ ++ ++G VKR + + I+++G D + R + I ENL Sbjct: 124 IQRLREAERNQLLNEFLERYKDVKVVTGQVKRFDKSDAIIEIGRIDARLPRHQMIPMENL 183 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 RPGDRV++Y+ + R Q+ LSRT +F+ +L VPEI G++++K ++RDPG R Sbjct: 184 RPGDRVRAYVLKIDPTSRQQQITLSRTCNEFLGELMRQVVPEINEGLLEIKGIARDPGIR 243 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV D IDP+G+C+G++GSR+Q+V EL +E+IDI+ W+ A +V++AL PA + Sbjct: 244 AKVAVQVKDKRIDPIGSCIGVKGSRIQSVSGELMNERIDIIRWADQPAEYVMSALSPATI 303 Query: 297 TKVVLDEDVGRIEVIVPK-EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +++ ED ++EV+ P + +AIG G N RLAS+LTGW I+++ +++ + R+ + Sbjct: 304 SSIIVHEDEHKVEVVTPDLDNSKIAIGSNGVNKRLASELTGWEIEVMDDDQAAKKREDEI 363 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R Q +++DE +A +L+ G +EE+A + E+ SIE FDE+T E++ RAR Sbjct: 364 APRRQELCDRLDIDEEVAQVLIENGIETLEEVAYLPEEELLSIEQFDEDTVKELRSRART 423 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 L + L+++ + L +PG+ +I L GIKT++ LA S D+L+ Sbjct: 424 AL--LTSALEREELLKWADKSLVDLPGMTHEIANKLKPAGIKTLDQLADLSTDELV 477 >gi|166030876|ref|ZP_02233705.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC 27755] gi|166029143|gb|EDR47900.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC 27755] Length = 401 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ +T D LF Sbjct: 4 ELLEALNILEKEKEISKETLLDAIENSLLNACKNHFGKADNIKVIMDHDTCDYQLFAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A D D+G +V P+ FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVETVEDPLEQISLDEASQLDGHYDLGDIVRVPIESKSFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVTEVRDGIVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D + Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDEKK 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|238924307|ref|YP_002937823.1| transcription elongation factor NusA [Eubacterium rectale ATCC 33656] gi|238875982|gb|ACR75689.1| transcription elongation factor NusA [Eubacterium rectale ATCC 33656] gi|291525077|emb|CBK90664.1| transcription termination factor NusA [Eubacterium rectale DSM 17629] gi|291529172|emb|CBK94758.1| transcription termination factor NusA [Eubacterium rectale M104/1] Length = 414 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I ++ +L + +S+ A ++ +G +++VEI+PET S ++ Sbjct: 4 ELLEALNILEQEKNISKETLLEAIENSLVTACKNHFGKSDNVKVEIDPETCAFSCYQEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ VE+ +ISL A + + +G +V + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVDTVEDPVEEISLADAHKVNGNYQLGDIVRVEVKSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ K ++++G V+R NV ++LG +D ++ E I E +P +R+K YI Sbjct: 124 KVIFDEYNSKEKDVVTGVVQRYIGKNVSINLGKADALLTESEQIKGEVFKPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++KA+SR+ GSR K+AV+S+D + Sbjct: 184 EVKSTSKGPKILVSRTHPELVKRLFESEVTEVKEGIVEIKAISREAGSRTKIAVWSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIITWDENPAILIQNALSPAKVISVIADADEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|269797844|ref|YP_003311744.1| NusA antitermination factor [Veillonella parvula DSM 2008] gi|269094473|gb|ACZ24464.1| NusA antitermination factor [Veillonella parvula DSM 2008] Length = 358 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/337 (44%), Positives = 219/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIVTETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 IDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LT W IDI +E Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSE 340 >gi|160940464|ref|ZP_02087809.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC BAA-613] gi|158437044|gb|EDP14811.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC BAA-613] Length = 394 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++ Sbjct: 10 ELLEAMEVLEKEKNISKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAEKA 69 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ ++SL A+ +P +IG V PL FGR+A Q+AK VI+QK+RE ER Sbjct: 70 VVENVEDDCLEMSLADAKMLNPKYEIGDTVQIPLDSKKFGRIATQNAKNVILQKIREEER 129 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K ++++G V+R NV ++LG D ++ E + E RP +RVK Y+ Sbjct: 130 KALYNEYYMKEKDVMTGVVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERVKVYVI 189 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D++ Sbjct: 190 EVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSNDAN 249 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ GSRV ++V+EL+ EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 250 VDPVGACVGLNGSRVNSIVSELKGEKIDIINWDDNPAYLIENALSPAKVICVVADEEERE 309 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 310 AQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 346 >gi|223936317|ref|ZP_03628229.1| NusA antitermination factor [bacterium Ellin514] gi|223894835|gb|EEF61284.1| NusA antitermination factor [bacterium Ellin514] Length = 425 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/391 (38%), Positives = 240/391 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + L + + EK I R V++S + +S+ AA+ G ++R I+P++GDI F L Sbjct: 4 DFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFAKLI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E+V + ISL A+ P +G V + P FGR+A Q AKQ ++Q +R AE+ Sbjct: 64 VSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRRAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EFKD+VG+IISG V+R + +V VDLG + ++ E + E + G+R++ Y+ Sbjct: 124 QLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKYEALLPNRERVPTEEYQIGERIRCYVK 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V GP+++LSR P+F++KLF +EV EI +G +++K ++R+PG R KLAV++ D Sbjct: 184 AVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYTRDEK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RG RV+ +V EL +EK+DI+ W P+ F+ NAL PA + +DE R Sbjct: 244 VDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDEANKR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++++V ++QLSLAIG+RGQN RL+S+LTGW +DI E + ++ E + Sbjct: 304 VKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLAAIPG 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASI 398 + + A LV +G +E+L IS+++ I Sbjct: 364 ITQEQADTLVHQGLTRLEDLLQADISDLSGI 394 >gi|251778646|ref|ZP_04821566.1| transcription termination factor NusA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082961|gb|EES48851.1| transcription termination factor NusA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/355 (41%), Positives = 235/355 (66%), Gaps = 13/355 (3%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRLLEVVEE 71 + EK I D++ + + D++ A + Y ++ ++++ IN E G+I ++ VV+E Sbjct: 12 IVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIHVYAQKMVVDE 71 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ +P ++ VV + P +FGRVA Q AKQV+ Q+++EAER+ Y Sbjct: 72 VYDEVTEISLEEAKAINPKYEVDDVVDLEVTPKNFGRVAAQLAKQVVTQRIKEAERNIIY 131 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R + +K YI +V+ Sbjct: 132 SEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEMLKLYIVEVKN 191 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV+S+D +D + Sbjct: 192 TSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAVYSNDEEVDAM 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V ++E+ +++ Sbjct: 252 GACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEVNEESKSAKIV 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT---------EEEDSINRQKDFNE 357 V +QLSLAIG+ GQNVRLA++LT W IDI + E+E +I++ D +E Sbjct: 312 VADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQDVDMSE 366 >gi|225572728|ref|ZP_03781483.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM 10507] gi|225039901|gb|EEG50147.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM 10507] Length = 405 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK+I +D +L + S+ +A ++ YG +++V I+P+T D S++ Sbjct: 4 ELLGALEILEKEKNISKDTLLDAIEQSLIQACKNHYGKADNVKVSIDPQTCDFSVYAERT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VE+ +ISL+ A ++G V+ P+ +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVEQVEDPVMEISLENALKISARAEVGDVIKVPINSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ K ++++G V+R NV ++LG +D ++ +E + E P +R+K YI Sbjct: 124 KVLYNQYYGKEKDVVTGIVQRNLGKNVSINLGKADALLNENEQVKTEVFHPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILVSRTHPELVKRLFESEVAEVREGIVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVSELRGEKIDIINWSENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|331090930|ref|ZP_08339772.1| transcription termination factor NusA [Lachnospiraceae bacterium 2_1_46FAA] gi|330405152|gb|EGG84688.1| transcription termination factor NusA [Lachnospiraceae bacterium 2_1_46FAA] Length = 368 Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F Sbjct: 4 ELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVIMNRETCDYSVFAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVENVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR+K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRSKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNE 340 >gi|294500900|ref|YP_003564600.1| transcription termination factor NusA [Bacillus megaterium QM B1551] gi|295706246|ref|YP_003599321.1| transcription termination factor NusA [Bacillus megaterium DSM 319] gi|294350837|gb|ADE71166.1| transcription termination factor NusA [Bacillus megaterium QM B1551] gi|294803905|gb|ADF40971.1| transcription termination factor NusA [Bacillus megaterium DSM 319] Length = 370 Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 219/328 (66%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I +DV++ + ++ A + + ++RV++N E G + +F +VV+EV + + Sbjct: 15 EKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDLNLERGSMRVFARKDVVDEVYDPRLE 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D+ Sbjct: 75 ISVEEAQTINPNFQLDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAERGVIYSEFSDRE 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +I++G V+R + + V LG + ++ + E + E +P DR+K YI V + +GPQ+ Sbjct: 135 EDIMTGIVQRQDSRFIYVSLGKIEALLPQSEQMPNEQYKPHDRIKVYITKVEKTTKGPQI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SRTHP + +LF EVPEIY+G V++K+V+R+ G R+K++V S + +DPVG+CVG + Sbjct: 195 YVSRTHPGLLKRLFEKEVPEIYDGTVELKSVAREAGDRSKISVHSEYAEVDPVGSCVGPK 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RVQAVV EL+ EKIDIV WS D FV NAL P+ V V++DE+ VIVP QLS Sbjct: 255 GQRVQAVVNELKGEKIDIVRWSNDPVEFVANALSPSKVVDVIVDENEKATTVIVPDYQLS 314 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEE 346 LAIG+RGQN RLA++LTGW IDI ++ E Sbjct: 315 LAIGKRGQNARLAAKLTGWKIDIKSQSE 342 >gi|281355268|ref|ZP_06241762.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548] gi|281318148|gb|EFB02168.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548] Length = 414 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 158/400 (39%), Positives = 240/400 (60%), Gaps = 7/400 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL I + + E+ I RD ++ + +I AAR S+++V+I+P TG I + LE Sbjct: 4 ELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWATLE 63 Query: 68 VVEEVENYTC-QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE N TC Q+ + AR+R P + +G V + P +FGR+A Q+A+Q I+Q++R+AE Sbjct: 64 VVEE--NPTCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLRKAE 121 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ EF D++G+IISGTV+R E GN+I+D ++G++ E I E PGD +++ + Sbjct: 122 KENVQEEFADRIGQIISGTVRRFEAGNIIIDFQKAEGIMPSKEKIHDEQYMPGDIIRALL 181 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V GP +++SR+ P+F+ +LF E+ EI++G+V++ ++R+ G R K++V S+D Sbjct: 182 LRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVMSTDP 241 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRG RV+ + EL +E+IDIV + D + NAL PA V V ++E Sbjct: 242 RVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVNEAKH 301 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER----TQFF 362 + V V EQ LA G++ QNVRL S+L GW I+I EEE E+ Q Sbjct: 302 ELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIAAQKL 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 +AI V E A LLV G+ V+ + + IEG D Sbjct: 362 AEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGID 401 >gi|325569920|ref|ZP_08145914.1| transcription elongation factor NusA [Enterococcus casseliflavus ATCC 12755] gi|325157043|gb|EGC69211.1| transcription elongation factor NusA [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 223/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D + Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSNVIFDVDNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSE 341 >gi|150016083|ref|YP_001308337.1| transcription elongation factor NusA [Clostridium beijerinckii NCIMB 8052] gi|149902548|gb|ABR33381.1| NusA antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 225/327 (68%), Gaps = 4/327 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRLLEVVEEVEN 74 EK I D++ + + D++ A + Y + +++V I+ ETG+I ++ VV+EV + Sbjct: 15 EKGICEDLLFTTIQDAMVAAYKKNYANANTNAQNVKVNIDRETGEIHVYAQKTVVDEVYD 74 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +ISL+ A++ +P ++ ++S + P +FGRVA Q AKQV+ Q+++EAER Y E+ Sbjct: 75 DVTEISLEEAKELNPKSEVDDIISLEVTPKNFGRVAAQLAKQVVTQRIKEAERTIIYDEY 134 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K+K +II+GT+ R + G V V+LG +G+I +E I E + +++K YI +V+ + Sbjct: 135 KEKEFDIITGTILRKDKGIVFVNLGKLEGIIGPNEQIPNEEYKFNEKLKLYIVEVKNGNK 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GPQ+ +SRTHP + +LF +EVPEI+ G+V++K++SR+ GSR+K+AV+S+D +DP+GAC Sbjct: 195 GPQIHVSRTHPGLVKRLFELEVPEIFEGVVEIKSISREAGSRSKIAVYSNDEEVDPMGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG +G RVQ++V EL++EKIDI+ WS + F+ N+L PA V V +DE+ +V+V Sbjct: 255 VGPKGVRVQSIVNELKNEKIDIIKWSKNPEEFIANSLSPAKVLSVAVDENNKSAKVVVDD 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 315 NQLSLAIGKEGQNVRLAAKLTNWKIDI 341 >gi|188588167|ref|YP_001920615.1| transcription elongation factor NusA [Clostridium botulinum E3 str. Alaska E43] gi|188498448|gb|ACD51584.1| transcription termination factor NusA [Clostridium botulinum E3 str. Alaska E43] Length = 384 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/355 (41%), Positives = 235/355 (66%), Gaps = 13/355 (3%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRLLEVVEE 71 + EK I D++ + + D++ A + Y ++ ++++ IN E G+I ++ VV+E Sbjct: 12 IVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIHVYAQKMVVDE 71 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+++EAER+ Y Sbjct: 72 VYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQRIKEAERNIIY 131 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R + +K YI +V+ Sbjct: 132 SEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEMLKLYIVEVKN 191 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV+S+D +D + Sbjct: 192 TSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAVYSNDEEVDAM 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V ++E+ +++ Sbjct: 252 GACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEVNEESKSAKIV 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT---------EEEDSINRQKDFNE 357 V +QLSLAIG+ GQNVRLA++LT W IDI + E+E +I++ D +E Sbjct: 312 VADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQDVDMSE 366 >gi|293374143|ref|ZP_06620477.1| transcription termination factor NusA [Turicibacter sanguinis PC909] gi|325837442|ref|ZP_08166424.1| transcription termination factor NusA [Turicibacter sp. HGF1] gi|292647246|gb|EFF65222.1| transcription termination factor NusA [Turicibacter sanguinis PC909] gi|325490974|gb|EGC93272.1| transcription termination factor NusA [Turicibacter sp. HGF1] Length = 351 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 150/342 (43%), Positives = 217/342 (63%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E + + EK I +D+++ ++ A + + ++++VEIN TG + L++ Sbjct: 2 NTKEFFAALELLEKEKGISKDIIIEAFEHALISAYKKNFNQATNVKVEINEVTGTVKLYQ 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVEEV QISL A +P G +++ + P DFGR+A Q+AKQV+ Q++R+ Sbjct: 62 QKTVVEEVTRPQEQISLDEAMRLNPHYQEGDIINFEVTPKDFGRIATQTAKQVVKQRIRQ 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD + EFKD+ GEI++G V + + +V VDLG + ++ E ++ + ++P R+K Sbjct: 122 AERDNLFQEFKDREGEIVTGIVVKDDGKHVFVDLGKIEALLPIREIMNPDEIKPNSRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + + +GP V +SR P + +LF +EVPEIY+G V++ +V+RD G R K+ V S Sbjct: 182 YISKIESKNKGPVVYVSRKDPNLIKRLFELEVPEIYDGTVEIMSVARDAGDRTKICVASE 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVGACVG G RVQ +V EL EKIDI+ +S D A V NAL PA V+KVV+DE Sbjct: 242 DENVDPVGACVGPSGQRVQNIVDELNGEKIDIIQFSKDPAVLVANALSPAQVSKVVVDEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+RGQN RLA+QLTGW IDI E E Sbjct: 302 KKATVVLVPDNQLSLAIGKRGQNARLAAQLTGWKIDIKPESE 343 >gi|311030088|ref|ZP_07708178.1| transcription elongation factor NusA [Bacillus sp. m3-13] Length = 374 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 224/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + EK I +DV++ + ++ A + + ++RV++N ETG + +F + Sbjct: 4 ELFDALTLMEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDMNLETGTMRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ AR DP+ VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVFDSRLEISIQEARQIDPNYQENDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K ++ Sbjct: 124 GVIYSEYIEREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNEHYKPHDRIKVFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + Sbjct: 184 KVEKTTKGPQIFVSRSHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHCDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V +V ++E+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSKDPVEFVANALSPSKVLEVQVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|227499045|ref|ZP_03929182.1| NusA antitermination factor [Acidaminococcus sp. D21] gi|226904494|gb|EEH90412.1| NusA antitermination factor [Acidaminococcus sp. D21] Length = 359 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 145/331 (43%), Positives = 219/331 (66%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A EK I DV+ S + +++ A + +G+ ++RV +N E G+I ++ +V EVEN Sbjct: 12 LAKEKHISPDVLYSAVEEALITAYKKNFGSTQNVRVSMNKENGEIHVYAQKNIVTEVENP 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +ISL A +P G VV + + P +FGR+A Q+AKQVI+Q++REAER Y ++ Sbjct: 72 LTEISLDEAFKLNPRYQAGDVVEEEVTPKNFGRIAAQNAKQVIVQRIREAERGMVYEKYS 131 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 D+ +I++GT++R+E N+ VDLG ++G + +E I E R+K Y+ +V++ +G Sbjct: 132 DRENDIVTGTIQRIEGRNIFVDLGTAEGTLLPNEQIPGETYEYHQRIKCYVVEVKKTTKG 191 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++ S+DPVGACV Sbjct: 192 PQIILSRTHPGLLKRLFELEVAEIQDGTVIIDSVAREPGMRSKIAVHSTNPSVDPVGACV 251 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G +G RVQ VV EL EKIDIV +S + +V +AL P+ V D + V+VP Sbjct: 252 GPKGMRVQTVVDELGGEKIDIVKYSDNPEEYVASALSPSKVVSAAADAEHKICRVVVPDF 311 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 312 QLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342 >gi|255284074|ref|ZP_05348629.1| transcription termination factor NusA [Bryantella formatexigens DSM 14469] gi|255265419|gb|EET58624.1| transcription termination factor NusA [Bryantella formatexigens DSM 14469] Length = 427 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ D + EK+I ++V+L + S+ +A ++ +G +++V+INP+T + S+ Sbjct: 4 ELMEALDVLEKEKNISKEVLLEAIEQSLLQACKNHFGKADNVKVDINPDTCEFSVHAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL A+ +D ++G VV+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVEEVEDPVTEISLVDAKMKDSRYEVGDVVNVEIKSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K E+++G V+R NV ++LG D ++ +E + E RP +R+K Y+ Sbjct: 124 KVLYNEYYSKEREVVTGIVQRYLGRNVSINLGKVDAILNENEMVKGETFRPTERIKVYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++K ++R+ G+R K+AV+S+D Sbjct: 184 EVKDTPKGPKVLVSRTHPELVKRLFESEVTEVRDGTVEIKCIAREAGNRTKMAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG+ GSRV +V ELR EKIDI+ W + A + NAL PA V V D D Sbjct: 244 VDAVGACVGINGSRVNTIVEELRGEKIDIINWDENPALLIENALSPAKVIYVAADNDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|225570594|ref|ZP_03779619.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM 15053] gi|225160607|gb|EEG73226.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM 15053] Length = 397 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ ET D +F Sbjct: 4 ELLEALNILEKEKDISKETLLDAIENSLLNACKNHFGKADNIKVIMDRETCDYKVFAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEVE+ QISL+ AR+ D + ++G +V P+ FGR+A Q+AK +I+QK+RE ER Sbjct: 64 AVEEVEDDLEQISLEDAREIDSTFELGDIVQIPIESKSFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV +V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNTIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|187934771|ref|YP_001885468.1| transcription elongation factor NusA [Clostridium botulinum B str. Eklund 17B] gi|187722924|gb|ACD24145.1| transcription termination factor NusA [Clostridium botulinum B str. Eklund 17B] Length = 384 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 141/330 (42%), Positives = 225/330 (68%), Gaps = 4/330 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRLLEVVEE 71 + EK I D++ + + D++ A + Y ++ ++++ IN E G+I ++ VV+E Sbjct: 12 IVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIHVYAQKMVVDE 71 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+++EAER+ Y Sbjct: 72 VYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQRIKEAERNIIY 131 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R +++K YI +V+ Sbjct: 132 SEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEKLKLYIVEVKN 191 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV+S+D +D + Sbjct: 192 TSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAVYSNDEEVDAM 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G RVQ +V EL++EKIDI+ W+ D A F+ NAL PA V ++E+ +++ Sbjct: 252 GACVGPKGIRVQNIVNELKNEKIDIIKWNKDPAEFISNALSPAKVISAEVNEESKSAKIV 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V +QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 312 VADDQLSLAIGKEGQNVRLAAKLTNWKIDI 341 >gi|156741122|ref|YP_001431251.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941] gi|156232450|gb|ABU57233.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941] Length = 442 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 145/329 (44%), Positives = 218/329 (66%), Gaps = 3/329 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I ++ ++ VM ++ A R G +I V ++P TG ++ +VV++V Sbjct: 12 IASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPLTGAARVYSEKQVVDDV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q ++E ER+ Y Sbjct: 72 YDERFEIDLESARKIKPDVELGESVVVETTPKDFGRIAAQTAKQVILQGIKEVEREHIYG 131 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ D+ GE+++ TV+R+ GNVI+++G ++ V+ E + + G R+K Y+ ++RRE Sbjct: 132 EYMDREGELVTATVQRMAKGNVILEMGKAEAVLPPKEQVETDRYYHGQRLKVYLMEIRRE 191 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV + IDPVG Sbjct: 192 ERGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVAARQEGIDPVG 251 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 +CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L +D VIV Sbjct: 252 SCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLRDDEHAATVIV 311 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 PDKQLSLAIGKEGQNVRLAAKLTGWRIDI 340 >gi|253573564|ref|ZP_04850907.1| transcription termination factor NusA [Paenibacillus sp. oral taxon 786 str. D14] gi|251847092|gb|EES75097.1| transcription termination factor NusA [Paenibacillus sp. oral taxon 786 str. D14] Length = 365 Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 146/349 (41%), Positives = 231/349 (66%), Gaps = 2/349 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +D++ + ++ + + + T ++RV++N TG+I ++ Sbjct: 3 MDFIEALNELEREKGISKDILFEAIEAALISSYKRNFNTAQNVRVDMNRHTGEIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV + +ISL+ AR+ +P+ + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LVVEEVLDPRTEISLQAAREINPNYHLDDITEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F +K +I++G V+R + N+ VDLG + + +E + E + GDR+K+YI Sbjct: 123 RGLIYNAFVEKEEDIVTGIVQRQDLRNIYVDLGKVEAHLPLNELMPNEKFKHGDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ+LLSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S +S Sbjct: 183 TKVENTTKGPQILLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRNS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E Sbjct: 243 EVDPVGSCVGPKGTRVQTIVNELRGEKIDIVRYSENVEEYVANALSPSKVLEVQVFEAEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII--TEEEDSINRQK 353 VIVP QLSLAIG +GQN RLA++LTGW IDI T+ E+ R+K Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEEFGREK 351 >gi|257865909|ref|ZP_05645562.1| transcription termination factor NusA [Enterococcus casseliflavus EC30] gi|257872242|ref|ZP_05651895.1| transcription termination factor NusA [Enterococcus casseliflavus EC10] gi|257799843|gb|EEV28895.1| transcription termination factor NusA [Enterococcus casseliflavus EC30] gi|257806406|gb|EEV35228.1| transcription termination factor NusA [Enterococcus casseliflavus EC10] Length = 404 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 223/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D + Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSDVIFDVDNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSE 341 >gi|291536069|emb|CBL09181.1| transcription termination factor NusA [Roseburia intestinalis M50/1] Length = 402 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 226/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 5 ELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQEKT 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 65 VVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQKIREEER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K YI Sbjct: 125 KVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVYIL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 185 EVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSNDPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 245 VDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEEKS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 305 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 341 >gi|253580823|ref|ZP_04858086.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847893|gb|EES75860.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 406 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D + EKSI +D +L + S+ +A ++ +G ++ V I+PET D S++ Sbjct: 4 ELREALDILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNVHVTIDPETCDFSVYADRS 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE VE+ +ISL A +IGG++ P+ +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 IVEYVEDPAMEISLADALKITSRAEIGGMIQVPIQSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K E+++G V+RV NV ++LG +D V+ +E + E +P +R+K YI Sbjct: 124 KVLYDEYYGKEKEVVTGIVQRVMGKNVSINLGKADAVLSENEQVKGETFQPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDAVGACVGMNGARVNAVVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|257413921|ref|ZP_04744677.2| transcription termination factor NusA [Roseburia intestinalis L1-82] gi|257201821|gb|EEV00106.1| transcription termination factor NusA [Roseburia intestinalis L1-82] Length = 425 Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 226/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 23 ELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQEKT 82 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 83 VVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQKIREEER 142 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K YI Sbjct: 143 KVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVYIL 202 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 203 EVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSNDPD 262 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 263 VDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEEKS 322 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 323 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 359 >gi|257869192|ref|ZP_05648845.1| transcription termination factor NusA [Enterococcus gallinarum EG2] gi|257803356|gb|EEV32178.1| transcription termination factor NusA [Enterococcus gallinarum EG2] Length = 398 Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 222/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 TIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA VT V+ D D + Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNDDPAVFIANALNPAEVTDVIFDVDNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSE 341 >gi|299823034|ref|ZP_07054920.1| transcription termination factor NusA [Listeria grayi DSM 20601] gi|299816563|gb|EFI83801.1| transcription termination factor NusA [Listeria grayi DSM 20601] Length = 367 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 226/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + +K I R+V++ + ++ A + + ++RV++N E G I + + Sbjct: 4 ELMEALYVLENDKGISREVLVDAIEAALVSAYKRNFDKAENVRVDLNMENGSIRVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + +IS + A+ +P ++G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDQVFDSRLEISPEEAQKINPVYNVGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E R DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYRAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY G V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYEGSVEIKSVAREAGDRSKISVYTANKE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G+RVQA+V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 IDPVGACVGPKGARVQAIVDELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|255976057|ref|ZP_05426643.1| transcription termination factor NusA [Enterococcus faecalis T2] gi|307279086|ref|ZP_07560144.1| transcription termination factor NusA [Enterococcus faecalis TX0860] gi|255968929|gb|EET99551.1| transcription termination factor NusA [Enterococcus faecalis T2] gi|306504211|gb|EFM73423.1| transcription termination factor NusA [Enterococcus faecalis TX0860] Length = 399 Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|299139239|ref|ZP_07032415.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8] gi|298598919|gb|EFI55081.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8] Length = 544 Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/424 (40%), Positives = 253/424 (59%), Gaps = 22/424 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + ++ EK ID ++V+ + D+I A R Y T+ ++R E++ ETG+I + V Sbjct: 5 LYQSIELLSREKGIDPEIVVGAVEDAIALATRKYYKTVENMRGEMDRETGEIRAYVFKTV 64 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGG---VVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VE VE+ Q++L+ AR+ P +++GG D P GR+A Q AKQVI QKV Sbjct: 65 VETPELVEDADNQLALEQARELAPEVEVGGELRFYKDTTP---LGRIAAQMAKQVIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 REAERD + E+ + GEI++ TVKR+E +VI DLG ++ + + E E +RV Sbjct: 122 REAERDTVFNEYAHRAGEILTATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFSVAERV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV Sbjct: 182 RVVLLRVDRAAKGPQVIVSRAAPALVQSLFQSEVPEIYDGTVSIRAIAREAGERTKIAVV 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 S D +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + Sbjct: 242 SRDKDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSIT 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 D ++EVIV QLSLAIG++GQNVRLA++L W IDI +EEE ++++ ++ Q Sbjct: 302 DLAEKQLEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEE----KRQEVEQQMQA 357 Query: 362 FM--------QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 Q + E + L+A G VE LA + E+ + G ++T +I Sbjct: 358 MTGGPSTPIEQVTELGESVMEKLIAAGITTVESLADMTAEELGEVPGIGDKTVEKIAVAV 417 Query: 414 REYL 417 R Y Sbjct: 418 RHYF 421 >gi|291460012|ref|ZP_06599402.1| transcription termination factor NusA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417353|gb|EFE91072.1| transcription termination factor NusA [Oribacterium sp. oral taxon 078 str. F0262] Length = 444 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/338 (45%), Positives = 218/338 (64%), Gaps = 6/338 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LELL+ EK I + ++ + S+Q A R+ +G+ ++RV ++PE+ D S+ Sbjct: 9 LELLE------KEKGIPKQALIEAIELSLQTACRNHFGSADNVRVNVDPESCDFSVIADK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE V N +I L A+ DP ++G +V P+ FGR+A Q+AK VI+QK+RE E Sbjct: 63 TVVETVSNPIAEIGLSEAKLVDPKYELGDIVQVPVDSRSFGRIATQNAKGVIVQKIREEE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ E++SG V+R ++IV+LG DG + +E + E L P DR+K Y+ Sbjct: 123 RRVLYREYYSMAREVVSGVVERDTGRSIIVNLGRVDGYLSENEQVKGEVLNPTDRIKVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR +GP+VLLSRTHP+ + KLF E PEI GIV+++A++R+ GSR K+AV S+D Sbjct: 183 VEVRDSPKGPRVLLSRTHPELVKKLFEEEAPEIREGIVEIRAIAREAGSRTKMAVLSNDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG+ G+RV AVV ELR EKIDI+ + + A + NAL PA V V+ D D Sbjct: 243 DVDPVGSCVGLDGTRVNAVVEELRGEKIDIINYDENPAYLIENALSPAKVIAVIADPDNK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RL+++LTG+ IDI +E Sbjct: 303 DAMVIVPDTQLSLAIGKEGQNARLSAKLTGYKIDIKSE 340 >gi|258645576|ref|ZP_05733045.1| transcription termination factor NusA [Dialister invisus DSM 15470] gi|260402934|gb|EEW96481.1| transcription termination factor NusA [Dialister invisus DSM 15470] Length = 377 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 152/342 (44%), Positives = 220/342 (64%), Gaps = 4/342 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LLQ + + +K ++ DVV + + A + G+ + + ++ TG+ ++ V Sbjct: 5 LLQAVNFLVDKKKVEADVVFDALEMVLLTAYKKEMGSNAKTSISLDRTTGEYKIYEEKTV 64 Query: 69 VE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VE E EN +I+++ A+ + G ++ + P DFGRVA Q+AKQV+IQK+RE Sbjct: 65 VEVIDPESENAINEITVENAKKISKDYEAGDMLRVDVTPKDFGRVAAQAAKQVLIQKLRE 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF + G+II+GTVK E V VDLG +G++ E I E +P D++K Sbjct: 125 AERGSIYEEFSGREGDIITGTVKWSESRTVFVDLGRVEGILPFAEQIEGETFQPNDKIKC 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +VR+ +GP+++LSRTHP + +LF MEVPEIY+G V++K+V R+ GSRAK+AV++ Sbjct: 185 YVQEVRKTTKGPEIILSRTHPGLLKRLFEMEVPEIYSGTVEIKSVVREAGSRAKIAVYAM 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ NAL PA V V + ++ Sbjct: 245 DPNVDPVGACVGPKGQRVQNIVNELHDEKIDIVRWDEDPAIYIANALSPAKVVSVSVWDE 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LT W IDI +E + Sbjct: 305 ERSSYVIVPDYQLSLAIGKAGQNARLANKLTNWKIDIKSESQ 346 >gi|329577093|gb|EGG58566.1| transcription termination factor NusA [Enterococcus faecalis TX1467] Length = 399 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|302874660|ref|YP_003843293.1| NusA antitermination factor [Clostridium cellulovorans 743B] gi|307690726|ref|ZP_07633172.1| transcription elongation factor NusA [Clostridium cellulovorans 743B] gi|302577517|gb|ADL51529.1| NusA antitermination factor [Clostridium cellulovorans 743B] Length = 356 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 223/338 (65%), Gaps = 4/338 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I D + + D++ A + Y T + +V +N ETGDI +F ++VE Sbjct: 12 IVKEKGISEDQLFETIEDAMVAAYKKNYSKGSETNQNFKVTMNRETGDIKVFSRKDIVEN 71 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V N +I+L+ A++ DP +IG +V + P DFGRVA Q+AKQ++IQ+++EAER+ Y Sbjct: 72 VLNPVNEITLEEAKNYDPRYEIGEIVDIEVTPKDFGRVAAQAAKQLVIQRIKEAERNLIY 131 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EF +K +II+GTV R + NV+V++G + V+ E I E +++K Y+ +V++ Sbjct: 132 EEFAEKEFDIINGTVIRKDKKNVLVNIGRIETVLNESEQIPGEQYNFNEKLKLYVVEVKK 191 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GP +++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S+D +D + Sbjct: 192 TSKGPSIVVSRTHPNLVKRLFEIEVPEIYEGIVEIKSIAREAGSRTKIAVYSNDEDVDAM 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G RVQ +V EL +EKIDI+ W+ ++ N+L PA V +DE +VI Sbjct: 252 GACVGSKGLRVQNIVNELGNEKIDIIKWNKLPEEYIANSLSPAKTLDVSIDEQNKCAKVI 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V QLSLAIG+ GQNVRLA++LTGW IDI ++ + S+ Sbjct: 312 VDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQHSV 349 >gi|56963996|ref|YP_175727.1| transcription elongation factor NusA [Bacillus clausii KSM-K16] gi|56910239|dbj|BAD64766.1| transcriptional elongation protein [Bacillus clausii KSM-K16] Length = 368 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 148/339 (43%), Positives = 220/339 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ + +K I ++V++ + ++ + +G ++RV++N + G I +F Sbjct: 4 EFMEALSTLEADKGIKKEVIIEAIEAALISGYKRNFGQAQNVRVDVNRDNGSIRVFARKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +IS A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDKRLEISEAEAQRINPHYEVDDIVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+YI Sbjct: 124 GIIYSDFIDREEDIMNGIVQRQDHRFIYVDLGKVEALLPLSEQMPNETYKHNDRIKAYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV S + Sbjct: 184 KVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHSDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG RG RVQ +V EL+ EKIDIV WS D +V NAL PA V KV + E Sbjct: 244 VDSVGACVGQRGQRVQTIVDELKGEKIDIVEWSEDPVVYVANALSPAKVMKVNVLEGEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESE 342 >gi|315641143|ref|ZP_07896222.1| transcription elongation factor NusA [Enterococcus italicus DSM 15952] gi|315483151|gb|EFU73668.1| transcription elongation factor NusA [Enterococcus italicus DSM 15952] Length = 376 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 219/338 (64%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +D+V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKDIVIDALEAALISAYKRHYGQSQNVEVEFDRKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + ++ E +P DR+K Y+ Sbjct: 124 SIIYNEFSAYEKDIMQGIVERQDSRYIYVNLGKIEAVLSKQDQMANEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKIAVRSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W D A F+ NAL PA VT V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQALVNELKGENMDIVEWDEDPAIFIANALNPAEVTDVLFDTTNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|257085469|ref|ZP_05579830.1| transcription termination factor NusA [Enterococcus faecalis Fly1] gi|256993499|gb|EEU80801.1| transcription termination factor NusA [Enterococcus faecalis Fly1] Length = 403 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|29375840|ref|NP_814994.1| transcription elongation factor NusA [Enterococcus faecalis V583] gi|227518531|ref|ZP_03948580.1| transcription elongation factor NusA [Enterococcus faecalis TX0104] gi|227553057|ref|ZP_03983106.1| transcription elongation factor NusA [Enterococcus faecalis HH22] gi|229546052|ref|ZP_04434777.1| transcription elongation factor NusA [Enterococcus faecalis TX1322] gi|229550242|ref|ZP_04438967.1| transcription elongation factor NusA [Enterococcus faecalis ATCC 29200] gi|255973018|ref|ZP_05423604.1| transcription termination factor NusA [Enterococcus faecalis T1] gi|256762268|ref|ZP_05502848.1| transcription termination factor NusA [Enterococcus faecalis T3] gi|256852913|ref|ZP_05558283.1| transcription elongation factor NusA [Enterococcus faecalis T8] gi|256958759|ref|ZP_05562930.1| transcription termination factor NusA [Enterococcus faecalis DS5] gi|256962135|ref|ZP_05566306.1| transcription termination factor NusA [Enterococcus faecalis Merz96] gi|256965334|ref|ZP_05569505.1| transcription termination factor NusA [Enterococcus faecalis HIP11704] gi|257078788|ref|ZP_05573149.1| transcription termination factor NusA [Enterococcus faecalis JH1] gi|257082768|ref|ZP_05577129.1| transcription termination factor NusA [Enterococcus faecalis E1Sol] gi|257086618|ref|ZP_05580979.1| transcription termination factor NusA [Enterococcus faecalis D6] gi|257089675|ref|ZP_05584036.1| transcriptional termination factor nusA [Enterococcus faecalis CH188] gi|257415889|ref|ZP_05592883.1| transcription termination factor NusA [Enterococcus faecalis AR01/DG] gi|257419091|ref|ZP_05596085.1| transcription termination factor nusA [Enterococcus faecalis T11] gi|257422841|ref|ZP_05599831.1| transcription elongation factor nusA [Enterococcus faecalis X98] gi|293383160|ref|ZP_06629077.1| transcription termination factor NusA [Enterococcus faecalis R712] gi|293387686|ref|ZP_06632231.1| transcription termination factor NusA [Enterococcus faecalis S613] gi|294780121|ref|ZP_06745494.1| transcription termination factor NusA [Enterococcus faecalis PC1.1] gi|300859670|ref|ZP_07105758.1| transcription termination factor NusA [Enterococcus faecalis TUSoD Ef11] gi|307268540|ref|ZP_07549913.1| transcription termination factor NusA [Enterococcus faecalis TX4248] gi|307273441|ref|ZP_07554686.1| transcription termination factor NusA [Enterococcus faecalis TX0855] gi|307277604|ref|ZP_07558696.1| transcription termination factor NusA [Enterococcus faecalis TX2134] gi|307288429|ref|ZP_07568417.1| transcription termination factor NusA [Enterococcus faecalis TX0109] gi|307291252|ref|ZP_07571136.1| transcription termination factor NusA [Enterococcus faecalis TX0411] gi|312899340|ref|ZP_07758673.1| transcription termination factor NusA [Enterococcus faecalis TX0470] gi|312904021|ref|ZP_07763189.1| transcription termination factor NusA [Enterococcus faecalis TX0635] gi|312907251|ref|ZP_07766242.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 512] gi|312909869|ref|ZP_07768717.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 516] gi|312952268|ref|ZP_07771143.1| transcription termination factor NusA [Enterococcus faecalis TX0102] gi|29343302|gb|AAO81064.1| N utilization substance protein A [Enterococcus faecalis V583] gi|227074013|gb|EEI11976.1| transcription elongation factor NusA [Enterococcus faecalis TX0104] gi|227177800|gb|EEI58772.1| transcription elongation factor NusA [Enterococcus faecalis HH22] gi|229304680|gb|EEN70676.1| transcription elongation factor NusA [Enterococcus faecalis ATCC 29200] gi|229308825|gb|EEN74812.1| transcription elongation factor NusA [Enterococcus faecalis TX1322] gi|255964036|gb|EET96512.1| transcription termination factor NusA [Enterococcus faecalis T1] gi|256683519|gb|EEU23214.1| transcription termination factor NusA [Enterococcus faecalis T3] gi|256711372|gb|EEU26410.1| transcription elongation factor NusA [Enterococcus faecalis T8] gi|256949255|gb|EEU65887.1| transcription termination factor NusA [Enterococcus faecalis DS5] gi|256952631|gb|EEU69263.1| transcription termination factor NusA [Enterococcus faecalis Merz96] gi|256955830|gb|EEU72462.1| transcription termination factor NusA [Enterococcus faecalis HIP11704] gi|256986818|gb|EEU74120.1| transcription termination factor NusA [Enterococcus faecalis JH1] gi|256990798|gb|EEU78100.1| transcription termination factor NusA [Enterococcus faecalis E1Sol] gi|256994648|gb|EEU81950.1| transcription termination factor NusA [Enterococcus faecalis D6] gi|256998487|gb|EEU85007.1| transcriptional termination factor nusA [Enterococcus faecalis CH188] gi|257157717|gb|EEU87677.1| transcription termination factor NusA [Enterococcus faecalis ARO1/DG] gi|257160919|gb|EEU90879.1| transcription termination factor nusA [Enterococcus faecalis T11] gi|257164665|gb|EEU94625.1| transcription elongation factor nusA [Enterococcus faecalis X98] gi|291079499|gb|EFE16863.1| transcription termination factor NusA [Enterococcus faecalis R712] gi|291082875|gb|EFE19838.1| transcription termination factor NusA [Enterococcus faecalis S613] gi|294452796|gb|EFG21225.1| transcription termination factor NusA [Enterococcus faecalis PC1.1] gi|295112810|emb|CBL31447.1| transcription termination factor NusA [Enterococcus sp. 7L76] gi|300850488|gb|EFK78237.1| transcription termination factor NusA [Enterococcus faecalis TUSoD Ef11] gi|306497483|gb|EFM67016.1| transcription termination factor NusA [Enterococcus faecalis TX0411] gi|306500600|gb|EFM69929.1| transcription termination factor NusA [Enterococcus faecalis TX0109] gi|306505869|gb|EFM75047.1| transcription termination factor NusA [Enterococcus faecalis TX2134] gi|306509968|gb|EFM78993.1| transcription termination factor NusA [Enterococcus faecalis TX0855] gi|306515136|gb|EFM83678.1| transcription termination factor NusA [Enterococcus faecalis TX4248] gi|310626279|gb|EFQ09562.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 512] gi|310629652|gb|EFQ12935.1| transcription termination factor NusA [Enterococcus faecalis TX0102] gi|310632497|gb|EFQ15780.1| transcription termination factor NusA [Enterococcus faecalis TX0635] gi|311289827|gb|EFQ68383.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 516] gi|311293491|gb|EFQ72047.1| transcription termination factor NusA [Enterococcus faecalis TX0470] gi|315027493|gb|EFT39425.1| transcription termination factor NusA [Enterococcus faecalis TX2137] gi|315030928|gb|EFT42860.1| transcription termination factor NusA [Enterococcus faecalis TX4000] gi|315034084|gb|EFT46016.1| transcription termination factor NusA [Enterococcus faecalis TX0017] gi|315036752|gb|EFT48684.1| transcription termination factor NusA [Enterococcus faecalis TX0027] gi|315145578|gb|EFT89594.1| transcription termination factor NusA [Enterococcus faecalis TX2141] gi|315147751|gb|EFT91767.1| transcription termination factor NusA [Enterococcus faecalis TX4244] gi|315151452|gb|EFT95468.1| transcription termination factor NusA [Enterococcus faecalis TX0012] gi|315153231|gb|EFT97247.1| transcription termination factor NusA [Enterococcus faecalis TX0031] gi|315155990|gb|EFU00007.1| transcription termination factor NusA [Enterococcus faecalis TX0043] gi|315157838|gb|EFU01855.1| transcription termination factor NusA [Enterococcus faecalis TX0312] gi|315160336|gb|EFU04353.1| transcription termination factor NusA [Enterococcus faecalis TX0645] gi|315165485|gb|EFU09502.1| transcription termination factor NusA [Enterococcus faecalis TX1302] gi|315166759|gb|EFU10776.1| transcription termination factor NusA [Enterococcus faecalis TX1341] gi|315169950|gb|EFU13967.1| transcription termination factor NusA [Enterococcus faecalis TX1342] gi|315575674|gb|EFU87865.1| transcription termination factor NusA [Enterococcus faecalis TX0309B] gi|315578368|gb|EFU90559.1| transcription termination factor NusA [Enterococcus faecalis TX0630] gi|315579882|gb|EFU92073.1| transcription termination factor NusA [Enterococcus faecalis TX0309A] gi|323480502|gb|ADX79941.1| transcription elongation protein nusA [Enterococcus faecalis 62] gi|327534893|gb|AEA93727.1| transcription termination factor NusA [Enterococcus faecalis OG1RF] Length = 399 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|167758065|ref|ZP_02430192.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704] gi|167663962|gb|EDS08092.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704] Length = 398 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ ++ T D LF Sbjct: 4 ELLEALNILEEEKDISKETLLDAIENSLLNACKNHFGKADNIKLIMDRTTCDYQLFAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEDVEDKLEQISLEDAKEIDSQYELGDIVQIPIESKSFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVIEVKEGIVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|312143666|ref|YP_003995112.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus'] gi|311904317|gb|ADQ14758.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus'] Length = 402 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/340 (44%), Positives = 228/340 (67%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E +Q D + +K I ++V++ + ++ A + +G+ ++R++I+ + G++ ++ Sbjct: 3 VEFIQALDDIEKDKGISKEVLIDAIETALVSAYKKDFGSKDNVRIDISTDAGEVKVYSRK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVEEVEN QISLK A D IG +V + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 EVVEEVENENTQISLKEADKIDGKYKIGDIVEIEVTPGNFGRIAAQTAKQVVMQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + +FK+K E+I+GT++R N+++D+G ++ ++ E I+ E G R+K Y+ Sbjct: 123 RDVIFDQFKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGEKYEIGKRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +GP++L+SRTHP + +LF +EVPEI+ G+V++KAV+R+ G R+K+AV S D Sbjct: 183 VEVSSTSKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKAVAREAGQRSKMAVASKDK 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG +G RVQAVV +L EKIDIV W FV NAL PA V V +++ Sbjct: 243 QVDPVGACVGPKGMRVQAVVEQLNREKIDIVKWDESPEVFVANALNPAEVIDVKINKSDK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 EV+VP QLSLAIG+ GQN RLA++LTGW +DI E E Sbjct: 303 IAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESE 342 >gi|315648098|ref|ZP_07901199.1| NusA antitermination factor [Paenibacillus vortex V453] gi|315276744|gb|EFU40087.1| NusA antitermination factor [Paenibacillus vortex V453] Length = 365 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/340 (42%), Positives = 223/340 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+YI Sbjct: 123 RGLIYSAFIDKEDDIVTGTLQRQDMRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 183 TKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRND 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + ED Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELRGEKIDIVRYSEEVEEYVANALSPSKVLEVQVFEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQ 342 >gi|320103081|ref|YP_004178672.1| NusA antitermination factor [Isosphaera pallida ATCC 43644] gi|319750363|gb|ADV62123.1| NusA antitermination factor [Isosphaera pallida ATCC 43644] Length = 520 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 164/414 (39%), Positives = 251/414 (60%), Gaps = 39/414 (9%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+L +I D + EK I +D+++ + +I AAR + + + I+P+T I R Sbjct: 3 LDLPRIIDTIHREKGIPKDLLIDAIQTAILNAARKFFNDSEGLSITIDPQTLKIDATRGG 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E V DP++ FGR+A Q+AKQ++IQK REAE Sbjct: 63 ERV------------------DPAV--------------FGRIAAQTAKQIMIQKFREAE 90 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + EF+ + G++++GTV+R E G V+V+LG +D ++ R E I E L PGDR+++ + Sbjct: 91 RDTLFEEFESQKGDLLTGTVQRFEGGAVLVNLGKTDAILPRPEQIPGEALHPGDRIRAVV 150 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++V+++ + +++LSRTHP F+ KLF +E+PEI + +Q++A++R+ G R K+AV S D Sbjct: 151 HEVKKQGQRVKIILSRTHPDFVRKLFELEIPEIADNTIQIRALAREAGYRTKVAVASVDP 210 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +D VGACVG+RGSR++ + EL E+IDIV W+ + NAL PA + +V+L +G Sbjct: 211 KVDAVGACVGVRGSRIKTITDELGGERIDIVRWNDSLQVLIPNALAPAEIDEVMLCGLLG 270 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQA 365 R V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T EE D + + Q F Q Sbjct: 271 RAIVLVRDDQLSLAIGRRGQNVRLASKLVGWDIEIMTAEELDEV-----IDRAIQMFTQI 325 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVEIQGRAREYLE 418 VD +A LV +G ++L+ ++I + +A+IEG D E A+ I A E E Sbjct: 326 EGVDAELAQNLVEQGILSYDDLSVMEIDDLVATIEGLDHERAIRIVEAAEELAE 379 >gi|222099941|ref|YP_002534509.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359] gi|221572331|gb|ACM23143.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359] Length = 344 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 227/334 (67%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G+ ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGSSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ T QISL+ A+ DP+ +IG ++ L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VENVEDSTTQISLEEAKKLDPTAEIGSIIKKELDVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++PGD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSDWADIRIGKLETRLPKKEWIPGEEIKPGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PEI NGIV++KA++R+PG R K+AV S++ ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEIENGIVEIKAIAREPGVRTKVAVTSNNPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILRELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENRA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|206972659|ref|ZP_03233600.1| N utilization substance protein A [Bacillus cereus AH1134] gi|218235265|ref|YP_002368617.1| transcription elongation factor NusA [Bacillus cereus B4264] gi|228922570|ref|ZP_04085870.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954092|ref|ZP_04116121.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960032|ref|ZP_04121696.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047502|ref|ZP_04193092.1| Transcription elongation protein nusA [Bacillus cereus AH676] gi|229071314|ref|ZP_04204537.1| Transcription elongation protein nusA [Bacillus cereus F65185] gi|229081071|ref|ZP_04213581.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2] gi|229111287|ref|ZP_04240840.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15] gi|229146387|ref|ZP_04274758.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24] gi|229152015|ref|ZP_04280210.1| Transcription elongation protein nusA [Bacillus cereus m1550] gi|229180092|ref|ZP_04307436.1| Transcription elongation protein nusA [Bacillus cereus 172560W] gi|296504311|ref|YP_003666011.1| transcription elongation factor NusA [Bacillus thuringiensis BMB171] gi|206732416|gb|EDZ49597.1| N utilization substance protein A [Bacillus cereus AH1134] gi|218163222|gb|ACK63214.1| N utilization substance protein A [Bacillus cereus B4264] gi|228603301|gb|EEK60778.1| Transcription elongation protein nusA [Bacillus cereus 172560W] gi|228631364|gb|EEK87998.1| Transcription elongation protein nusA [Bacillus cereus m1550] gi|228637020|gb|EEK93479.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24] gi|228672063|gb|EEL27354.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15] gi|228702115|gb|EEL54591.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2] gi|228711768|gb|EEL63720.1| Transcription elongation protein nusA [Bacillus cereus F65185] gi|228723749|gb|EEL75104.1| Transcription elongation protein nusA [Bacillus cereus AH676] gi|228799548|gb|EEM46501.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805658|gb|EEM52248.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836999|gb|EEM82340.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325363|gb|ADH08291.1| transcription elongation factor NusA [Bacillus thuringiensis BMB171] Length = 368 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/352 (42%), Positives = 225/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|225374838|ref|ZP_03752059.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM 16841] gi|225213299|gb|EEG95653.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM 16841] Length = 390 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/343 (41%), Positives = 229/343 (66%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + A ELL+ + + EK+I ++ +L + +S+ A ++ +G +++V I+PET + Sbjct: 5 IMAKNNELLEALNILEQEKNISKETLLEAIENSLITACKNHFGKSENVKVNIDPETCEYH 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +F+ +VVE+VE+ +ISL A+ D ++ +V+ + +FGR+A Q+AK VI+QK Sbjct: 65 VFQEKKVVEKVEDPVEEISLVNAKMIDSKYELDDIVNVEVKSKEFGRIATQNAKNVILQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +RE ER + E+ K +I++G V+R NV ++LG D ++ +E + E +P +R Sbjct: 125 IREEERKVLFDEYYSKEKDIVTGIVQRYVGKNVSINLGKVDAILTENEQVKGEVFQPTER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++KA++R+ GSR K+AV Sbjct: 185 IKVYILEVKSTSKGPRVLVSRTHPELVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ Sbjct: 245 WSNDPDVDPVGACVGMNGARVNAIVNELRGEKIDIITWNENPAMLIENALSPAKVISVIA 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 D + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 305 DAEEKAAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 347 >gi|291538564|emb|CBL11675.1| transcription termination factor NusA [Roseburia intestinalis XB6B4] Length = 407 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 5 ELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQEKT 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A+ + +IG V + + +FGR+A Q+AK VI+QK+RE ER Sbjct: 65 VVETVEDPVEQISLVNAKMINSKYEIGDVANIEVQSKEFGRIATQNAKNVILQKIREEER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K YI Sbjct: 125 KVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVYIL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 185 EVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSNDPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 245 VDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEEKS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 305 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 341 >gi|229086368|ref|ZP_04218545.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44] gi|228696980|gb|EEL49788.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44] Length = 366 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 219/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVSNVFDPRLEISVEEARQMNPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|229191985|ref|ZP_04318955.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876] gi|228591536|gb|EEK49385.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876] Length = 368 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|314936573|ref|ZP_07843920.1| transcription termination factor NusA [Staphylococcus hominis subsp. hominis C80] gi|313655192|gb|EFS18937.1| transcription termination factor NusA [Staphylococcus hominis subsp. hominis C80] Length = 408 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|228475002|ref|ZP_04059730.1| transcription termination factor NusA [Staphylococcus hominis SK119] gi|228270987|gb|EEK12375.1| transcription termination factor NusA [Staphylococcus hominis SK119] Length = 408 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|256618850|ref|ZP_05475696.1| transcription termination factor NusA [Enterococcus faecalis ATCC 4200] gi|256598377|gb|EEU17553.1| transcription termination factor NusA [Enterococcus faecalis ATCC 4200] Length = 399 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 219/338 (64%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSKYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|16078723|ref|NP_389542.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. 168] gi|221309538|ref|ZP_03591385.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. 168] gi|221313862|ref|ZP_03595667.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318785|ref|ZP_03600079.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323057|ref|ZP_03604351.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. SMY] gi|321315427|ref|YP_004207714.1| transcription elongation factor NusA [Bacillus subtilis BSn5] gi|7404400|sp|P32727|NUSA_BACSU RecName: Full=Transcription elongation protein nusA gi|2634032|emb|CAB13533.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. subtilis str. 168] gi|291484215|dbj|BAI85290.1| transcription elongation factor NusA [Bacillus subtilis subsp. natto BEST195] gi|320021701|gb|ADV96687.1| transcription elongation factor NusA [Bacillus subtilis BSn5] Length = 371 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|296330875|ref|ZP_06873350.1| transcription elongation factor NusA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674393|ref|YP_003866065.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. spizizenii str. W23] gi|296151880|gb|EFG92754.1| transcription elongation factor NusA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412637|gb|ADM37756.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. spizizenii str. W23] Length = 372 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|255524231|ref|ZP_05391190.1| NusA antitermination factor [Clostridium carboxidivorans P7] gi|296185352|ref|ZP_06853762.1| transcription termination factor NusA [Clostridium carboxidivorans P7] gi|255512056|gb|EET88337.1| NusA antitermination factor [Clostridium carboxidivorans P7] gi|296050186|gb|EFG89610.1| transcription termination factor NusA [Clostridium carboxidivorans P7] Length = 368 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 224/338 (66%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G +++V +N E G+I ++ Sbjct: 4 EFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYINQGGNNQNVKVTMNRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V++EV + +ISL+ A+ DP+ DI VVS + P FGRVA Q+AKQV+IQ+++ Sbjct: 64 SQKTVIDEVFDEINEISLEEAKSIDPNYDIDDVVSIEVTPKKFGRVAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y +F +K +II+G V R + NV+VDLG ++ V+ +E + E D++K Sbjct: 124 EEERRIVYNDFIEKEDDIITGAVIRKDKNNVLVDLGKTEAVLGPNEQMPGEKYNFNDKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V++K+++R+ GSR K+AV S Sbjct: 184 LYIVEVKNTTKGAQIVISRTHPGLVKRLFELEVPEIFDGTVEIKSIAREAGSRTKIAVNS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ NAL PA V V LDE Sbjct: 244 NDENVDPMGACVGPKGIRVQNIVNELKNEKIDIIKWSKLPEEYIANALSPAKVIDVTLDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +++V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 ENKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|70726649|ref|YP_253563.1| transcription elongation factor NusA [Staphylococcus haemolyticus JCSC1435] gi|68447373|dbj|BAE04957.1| transcription termination-antitermination factor [Staphylococcus haemolyticus JCSC1435] Length = 410 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYTEFIDKEDDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|158320557|ref|YP_001513064.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs] gi|158140756|gb|ABW19068.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 345 Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 139/339 (41%), Positives = 225/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + + +K I +D+++ + ++ + + +G+ ++RVEIN + G++ ++ + Sbjct: 4 EFTEALEQIEKDKGISKDILIDAVEAALISSYKRNFGSSQNVRVEINRDNGEVHVYAQKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 + ++V + +I + A+ +P +G + P +FGR+A Q+AKQV++Q++REAER Sbjct: 64 ITDDVIDDLLEIHIDDAKIVNPKYSVGDTFESEVTPKNFGRIAAQTAKQVVVQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF ++ EII+G V RV GNV + LG ++ ++ E I E GDR+K YI Sbjct: 124 GIVYDEFINRESEIITGEVSRVAKGNVYISLGRTEAILGPGEQIPNEVYEHGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+LLSRTHP + +LF +EVPEI++G V++K++SR+ GSRAK+AV S D + Sbjct: 184 EVKKTTKGPQILLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREAGSRAKIAVDSKDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG +G+RVQ +V EL+ EKIDI+ +S D+ F+ ++L PA V ++ D Sbjct: 244 VDAVGACVGPKGARVQTIVDELKGEKIDIIKYSEDAKEFIASSLSPAKVLLCDINNDAKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 304 AKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|148657848|ref|YP_001278053.1| NusA antitermination factor [Roseiflexus sp. RS-1] gi|148569958|gb|ABQ92103.1| NusA antitermination factor [Roseiflexus sp. RS-1] Length = 442 Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 144/329 (43%), Positives = 217/329 (65%), Gaps = 3/329 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I ++ ++ VM ++ A R G +I V ++P TG ++ +VV++V Sbjct: 12 IASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPVTGMARVYAEKQVVDDV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q ++E ER+ Y Sbjct: 72 FDERFEIDLESARKIKPDVELGESVVVEATPRDFGRIAAQTAKQVILQGIKEVEREHIYG 131 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ D+ GE+++ TV+R+ GNVI+++G ++ ++ E + + G R+K Y+ ++RRE Sbjct: 132 EYMDREGELVTATVQRIAKGNVILEMGKAEAILPPKEQVETDRYYHGQRLKVYLMEIRRE 191 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV + IDPVG Sbjct: 192 DRGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVAARQEGIDPVG 251 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 +CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L +D VIV Sbjct: 252 SCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLRDDEHAATVIV 311 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 PDKQLSLAIGKEGQNVRLAAKLTGWRIDI 340 >gi|114566431|ref|YP_753585.1| transcription elongation factor NusA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337366|gb|ABI68214.1| NusA antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 378 Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 142/341 (41%), Positives = 225/341 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+Q + + E+ I + ++ + ++ A + +G ++ VE N G++ +F + Sbjct: 4 DLVQALNDIEKERGIPKRALIEAIKSALSTAYKKNFGIAQNVSVEFNEINGEVKVFSQKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 + +EV++ ++SL+ A++ P + +V P DFGR+A Q+AKQV+IQK+REAER Sbjct: 64 ISDEVKDPRLEMSLEEAQELYPDCKVEDLVYVEATPSDFGRIAAQTAKQVVIQKLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF ++ GEII+GT++R+E V + LG ++G++ + I E G R+K+YIY Sbjct: 124 SLIYEEFLEREGEIITGTIQRLESKTVYISLGRTEGIMMASDQIFGERYEVGQRIKAYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP + +SR+HP F+ +LF MEVPEIY+G+V++K+++R+ G+R+K+AV+S D Sbjct: 184 EVKNTSKGPNIFVSRSHPYFLRRLFEMEVPEIYDGVVEIKSIAREAGARSKIAVYSLDDK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG RG RVQ +V+EL EKIDI+ + D ++ NAL P+ V V ++E Sbjct: 244 IDSVGACVGPRGLRVQNIVSELGGEKIDIIKYDKDPERYISNALSPSRVVAVNINETDKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG+ GQN RLA++LTGW +DI +E + S Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKVDIRSESQMS 344 >gi|228966761|ref|ZP_04127805.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar sotto str. T04001] gi|228792860|gb|EEM40418.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar sotto str. T04001] Length = 368 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 150/352 (42%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|315174358|gb|EFU18375.1| transcription termination factor NusA [Enterococcus faecalis TX1346] Length = 399 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 146/338 (43%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALEVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSE 341 >gi|218898968|ref|YP_002447379.1| N utilization substance protein A [Bacillus cereus G9842] gi|228909640|ref|ZP_04073463.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 200] gi|228940904|ref|ZP_04103463.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973833|ref|ZP_04134409.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980422|ref|ZP_04140732.1| Transcription elongation protein nusA [Bacillus thuringiensis Bt407] gi|218542029|gb|ACK94423.1| N utilization substance protein A [Bacillus cereus G9842] gi|228779242|gb|EEM27499.1| Transcription elongation protein nusA [Bacillus thuringiensis Bt407] gi|228785858|gb|EEM33861.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818740|gb|EEM64806.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849929|gb|EEM94760.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 200] gi|326941582|gb|AEA17478.1| transcription elongation factor NusA [Bacillus thuringiensis serovar chinensis CT-43] Length = 368 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 150/352 (42%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|153814921|ref|ZP_01967589.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756] gi|145847952|gb|EDK24870.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756] Length = 404 Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 139/338 (41%), Positives = 230/338 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++ Sbjct: 3 IELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAEK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE E Sbjct: 63 NVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREEE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y+ Sbjct: 123 RKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 183 VEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSNDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D + Sbjct: 243 NVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 303 IASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|261407939|ref|YP_003244180.1| NusA antitermination factor [Paenibacillus sp. Y412MC10] gi|329929345|ref|ZP_08283098.1| transcription termination factor NusA [Paenibacillus sp. HGF5] gi|261284402|gb|ACX66373.1| NusA antitermination factor [Paenibacillus sp. Y412MC10] gi|328936714|gb|EGG33157.1| transcription termination factor NusA [Paenibacillus sp. HGF5] Length = 365 Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 143/340 (42%), Positives = 222/340 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+YI Sbjct: 123 RGLIYSAFIDKEDDIVTGTLQRQDLRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 183 TKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRND 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V ELR EKIDIV +S +V NAL P+ V +V + ED Sbjct: 243 EVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRYSDQVEEYVANALSPSKVLEVQVFEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQ 342 >gi|269837284|ref|YP_003319512.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269786547|gb|ACZ38690.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 443 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 229/346 (66%), Gaps = 9/346 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP----ETGDISLFRLLEVVEE 71 +A E++I R+ VLS + +++ + + GT ++ V+I+P G I +F + VVEE Sbjct: 12 IAAERNIPREAVLSSVEHALRTVYKKMAGTEEEVEVQIDPTLDPNKGGIRIFVVKRVVEE 71 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 VE+ +IS++ AR P +G V+ P +FGR+A Q+AKQV++Q++R+ ERD Y Sbjct: 72 VEDPNTEISVEEARKTHPDAVVGDVIRFDRTPQNFGRIAAQTAKQVVLQRIRDYERDSVY 131 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+ D+VGE+++G V+R + VIVDLG ++ V+ E + E R G R+K Y+ +V + Sbjct: 132 AEYIDRVGEVLNGIVQRADPKAVIVDLGKAEAVMPAREQVPNERYRVGQRLKVYLLEVNK 191 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + RGPQ+++SRTH + +LF +EVPEIY+G V++ AV+R+PG R+K+AV + +DPV Sbjct: 192 DTRGPQLIVSRTHANLIRRLFELEVPEIYSGAVEIMAVAREPGLRSKVAVAARQEKVDPV 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G+CVG+RG R+Q +V EL EKID++ WSPD+ TF+ NAL PA V L+E VI Sbjct: 252 GSCVGVRGVRIQNIVNELYGEKIDVIEWSPDTPTFIANALSPAKPISVQLNEAEKVARVI 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE-----EDSINRQ 352 VP EQ+SLAIG+ GQN RLA +LTGW IDI E +D I RQ Sbjct: 312 VPTEQMSLAIGKDGQNARLAYKLTGWRIDIKGPEALRGSDDDILRQ 357 >gi|229019010|ref|ZP_04175852.1| Transcription elongation protein nusA [Bacillus cereus AH1273] gi|229162752|ref|ZP_04290709.1| Transcription elongation protein nusA [Bacillus cereus R309803] gi|228620634|gb|EEK77503.1| Transcription elongation protein nusA [Bacillus cereus R309803] gi|228742338|gb|EEL92496.1| Transcription elongation protein nusA [Bacillus cereus AH1273] Length = 368 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 148/352 (42%), Positives = 224/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|226323231|ref|ZP_03798749.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758] gi|225208421|gb|EEG90775.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758] Length = 393 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 153/337 (45%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + EK I RD ++ + +S+ A ++ +G +I+V ++ ET D +L + Sbjct: 4 ELLEALTILEEEKDISRDTLMDAIENSLINACKNHFGKADNIKVIMDKETCDYTLIQEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL A+ DPS +IG +V P+ FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVEDKVEQISLADAKMIDPSYEIGDIVQIPVESKSFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R NV V+LG +D ++ +E + E P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGVVQRYIGKNVSVNLGKADAILTENEQVKGEKFEPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFEAEVTEVRDGIVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVGAVVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDERT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNE 340 >gi|317500433|ref|ZP_07958657.1| transcription termination factor NusA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089560|ref|ZP_08338459.1| transcription termination factor NusA [Lachnospiraceae bacterium 3_1_46FAA] gi|316898188|gb|EFV20235.1| transcription termination factor NusA [Lachnospiraceae bacterium 8_1_57FAA] gi|330404928|gb|EGG84466.1| transcription termination factor NusA [Lachnospiraceae bacterium 3_1_46FAA] Length = 404 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 139/337 (41%), Positives = 229/337 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++ Sbjct: 4 ELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAEKN 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y+ Sbjct: 124 KVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D + Sbjct: 184 EVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D + Sbjct: 244 VDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEEKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|52080267|ref|YP_079058.1| transcription elongation factor NusA [Bacillus licheniformis ATCC 14580] gi|52785644|ref|YP_091473.1| transcription elongation factor NusA [Bacillus licheniformis ATCC 14580] gi|319645953|ref|ZP_08000183.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2] gi|52003478|gb|AAU23420.1| NusA [Bacillus licheniformis ATCC 14580] gi|52348146|gb|AAU40780.1| NusA [Bacillus licheniformis ATCC 14580] gi|317391703|gb|EFV72500.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2] Length = 372 Score = 286 bits (731), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N +TG I +F + Sbjct: 4 ELLDALTVLEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRDTGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISIEDAVNINPNYIVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ E + E +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRIDNKFIYVSLGKIEALLPVAEQMPNEVYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 IDPVGACVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 340 >gi|194014307|ref|ZP_03052924.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061] gi|194013333|gb|EDW22898.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061] Length = 371 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISVDDAANMNPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 340 >gi|167465394|ref|ZP_02330483.1| transcription elongation factor NusA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382349|ref|ZP_08056256.1| transcription elongation factor NusA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153702|gb|EFX46077.1| transcription elongation factor NusA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 365 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 222/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ + EK I +D+++ + ++ + + + T ++RV+IN +TG I +F Sbjct: 4 EFIEALSEIEREKGISKDLLIDAIEAAMISSYKRNFNTAQNVRVDINRQTGVIRVFARKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + +ISL AR+ + + +G +V + P DFGR+A Q+AKQV+ Q++REAER Sbjct: 64 VVEDVLDPRLEISLTAAREINQNYQLGDIVEIEVTPRDFGRIAAQTAKQVVTQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y F DK +I++G V+R + + VDLG + V+ +E + E + GDRVK+YI Sbjct: 124 GLIYNAFIDKEEDIVTGIVQRQDQRSYYVDLGKVEAVLPLNEVMPTEKFKHGDRVKAYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S + Sbjct: 184 KVENTTKGPQIILSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVDSRNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V ELR EKIDIV W + +V NAL P+ V +V + ED Sbjct: 244 VDPVGSCVGPKGLRVQTIVNELRGEKIDIVRWMESTEEYVANALSPSKVLEVNIFEDEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG +GQN RLA++LTGW IDI +E Sbjct: 304 ARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSE 340 >gi|160947563|ref|ZP_02094730.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270] gi|158446697|gb|EDP23692.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270] Length = 378 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/334 (41%), Positives = 220/334 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + L+ D + EK + ++++ + ++ K+ +G ++++ IN TG + LF + Sbjct: 13 DFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVELFAIKT 72 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ +ISL A+ +G VS L MDFGRVA Q+A+ ++IQK+++AER Sbjct: 73 VVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQKIKDAER 132 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y +F+DK E+ISG ++R++ N+ ++LG + ++ E I E R G+R+K Y+ Sbjct: 133 EVIYNDFQDKERELISGQIQRIDRNNLFINLGKLEAIVTPPEQIKSEVYRVGERLKFYVK 192 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +G QVLLSR+ F++KLF +EVPEI +G V++++++R+PGSR K+AVFS + Sbjct: 193 EVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAVFSKNDD 252 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG + SRV +++ EL+ EKIDI+V+S + ++ N+L P+ V V +E R Sbjct: 253 VDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFTNESENR 312 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +IVP QLSLAIG+ GQN RLA++LT W IDI Sbjct: 313 ARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDI 346 >gi|168184627|ref|ZP_02619291.1| N utilization substance protein A [Clostridium botulinum Bf] gi|237795857|ref|YP_002863409.1| transcription elongation factor NusA [Clostridium botulinum Ba4 str. 657] gi|182672266|gb|EDT84227.1| N utilization substance protein A [Clostridium botulinum Bf] gi|229261617|gb|ACQ52650.1| N utilization substance protein A [Clostridium botulinum Ba4 str. 657] Length = 439 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/360 (41%), Positives = 244/360 (67%), Gaps = 9/360 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I ++ Sbjct: 4 EFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIKVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R +++K Sbjct: 124 EEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 +D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V ++D Sbjct: 244 NDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT----EEEDSINRQKDFNER 358 E+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI + E+E ++N + +E+ Sbjct: 304 EENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKDEK 363 >gi|331002483|ref|ZP_08326001.1| transcription termination factor NusA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410299|gb|EGG89733.1| transcription termination factor NusA [Lachnospiraceae oral taxon 107 str. F0167] Length = 395 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/333 (43%), Positives = 220/333 (66%), Gaps = 6/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE------VE 73 K+I + +L + +S+ A ++ +GT +++V +NP+T D S+ + EVVE +E Sbjct: 16 KNISKAAILEAIENSLISACKNNFGTADNVKVSVNPDTCDYSIIQAKEVVETLGNKPTIE 75 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + + Sbjct: 76 DKATKISLAEARMKNPNLSVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + K +I+SG V R N+ ++LG D V+ E + E L+ GDR+K ++ +V+ Sbjct: 136 YYMKERDIVSGAVTRFMGKNIAINLGRIDAVLAESEQVKSEELKLGDRLKVFVLEVKDNP 195 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++ +SRTHP+F+ +LF EVPEI +G+V++K++SR+ GSR K+AVFS ++ IDPVGA Sbjct: 196 KGPRISVSRTHPEFVKRLFESEVPEIRDGVVEIKSISREAGSRTKIAVFSHEADIDPVGA 255 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVG+ G RV AVV ELR EK+DIV W + + NAL PA V VV DE+ +VIVP Sbjct: 256 CVGVDGVRVNAVVEELRGEKVDIVNWDDNPGYLIENALSPAKVIAVVADEETKEADVIVP 315 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 348 >gi|242373557|ref|ZP_04819131.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W1] gi|242348920|gb|EES40522.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W1] Length = 403 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 222/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|163941553|ref|YP_001646437.1| transcription elongation factor NusA [Bacillus weihenstephanensis KBAB4] gi|229061419|ref|ZP_04198764.1| Transcription elongation protein nusA [Bacillus cereus AH603] gi|229134623|ref|ZP_04263433.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196] gi|229168555|ref|ZP_04296278.1| Transcription elongation protein nusA [Bacillus cereus AH621] gi|163863750|gb|ABY44809.1| NusA antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228614961|gb|EEK72063.1| Transcription elongation protein nusA [Bacillus cereus AH621] gi|228648884|gb|EEL04909.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196] gi|228717842|gb|EEL69490.1| Transcription elongation protein nusA [Bacillus cereus AH603] Length = 368 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/352 (42%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|160880908|ref|YP_001559876.1| NusA antitermination factor [Clostridium phytofermentans ISDg] gi|160429574|gb|ABX43137.1| NusA antitermination factor [Clostridium phytofermentans ISDg] Length = 354 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/341 (43%), Positives = 225/341 (65%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + + EK I ++V+L M +S+ A ++ +G +I+V I+ TG +S+F Sbjct: 6 ELIEALNQIEKEKDISKEVLLDAMENSLVAACKNHFGKADNIKVYIDRTTGAVSVFAERV 65 Query: 68 VVEEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V++ +ISL A + P ++G +V + P +FGR+A Q AKQV++QK+RE Sbjct: 66 VVEQVQDPVLEISLAEATMKFPKGKYELGDIVQVEVTPKNFGRIAAQKAKQVVVQKIREE 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ + +I++G V+R NV ++LG D V+ +E I E+ RP DR+K Y Sbjct: 126 ERKVLFNQYYGREKDIVTGIVQRYVGNNVSINLGKVDAVLMENEQIKGEHFRPTDRIKLY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP+ + +LF EV E+ GIV++K++SR+ G R K+AV S+D Sbjct: 186 VLEVKDTTKGPKITVSRTHPELVKRLFEAEVTEVKEGIVEIKSISREAGDRTKMAVSSND 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ G+RV A+V EL EKIDIV WS D A + NAL PA V V + E Sbjct: 246 PNVDPVGACVGLNGARVNAIVNELGGEKIDIVNWSDDPAELIENALSPAKVVSVDVSEGE 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIGR+GQN RLA++LTG+ IDI +E + Sbjct: 306 MSAKVIVPDYQLSLAIGRQGQNARLAARLTGYKIDIKSESQ 346 >gi|116624262|ref|YP_826418.1| NusA antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|116227424|gb|ABJ86133.1| NusA antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 542 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 249/411 (60%), Gaps = 12/411 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + Q + ++ EK ID +VL + D++ AAR Y + D +++P+TG I L+ + +V Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ + +++L AR D + ++GG V P GR++ Q+AKQVI QKVREAER+ Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + GE+++ T+KRVE + I+DLG ++ + + E E GDRV+ I Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGKTEAKLPKKEQSRLEGYSVGDRVRCIIKL 205 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP VL+SR P+ +++LF EVPEIY+G V ++ +R+ G R K+AV S D + Sbjct: 206 VDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRDV 265 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 D VGACVGM+G RVQ+++ ELR EKIDI+ +S DS F +AL PA V+++ V+D Sbjct: 266 DSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEKH 325 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE RQ+ ++ Sbjct: 326 MEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEE---KRQEVESQMAALVAPGAP 382 Query: 368 VDEIIAHLLVAE--------GFADVEELACVKISEIASIEGFDEETAVEIQ 410 V +I + + E G A +E+L + E+ + G E+ IQ Sbjct: 383 VSVLIDYGMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQ 433 >gi|223044244|ref|ZP_03614281.1| transcription termination factor NusA [Staphylococcus capitis SK14] gi|222442394|gb|EEE48502.1| transcription termination factor NusA [Staphylococcus capitis SK14] Length = 407 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 223/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNAD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|227551756|ref|ZP_03981805.1| transcription termination factor NusA [Enterococcus faecium TX1330] gi|257895648|ref|ZP_05675301.1| transcription termination factor NusA [Enterococcus faecium Com12] gi|293377741|ref|ZP_06623930.1| transcription termination factor NusA [Enterococcus faecium PC4.1] gi|227179061|gb|EEI60033.1| transcription termination factor NusA [Enterococcus faecium TX1330] gi|257832213|gb|EEV58634.1| transcription termination factor NusA [Enterococcus faecium Com12] gi|292643741|gb|EFF61862.1| transcription termination factor NusA [Enterococcus faecium PC4.1] Length = 391 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/362 (41%), Positives = 229/362 (63%), Gaps = 3/362 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +Q+ NE + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEHQNETEELHDE 363 Query: 365 AI 366 AI Sbjct: 364 AI 365 >gi|313680244|ref|YP_004057983.1| nusa antitermination factor [Oceanithermus profundus DSM 14977] gi|313152959|gb|ADR36810.1| NusA antitermination factor [Oceanithermus profundus DSM 14977] Length = 401 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 153/354 (43%), Positives = 221/354 (62%), Gaps = 11/354 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINP 55 NR E ++ VA E+ + D ++ +++ KA G + V + P Sbjct: 2 NR-EFVEALQHVALERGVSTDELIEAFEEALAKAYLRHKGFKPKEVEEGLGPLVEVHLEP 60 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 TG+I + + VVEEVEN I L+ A+ DP + +G + P+ P +F R+AVQ+AK Sbjct: 61 STGEIEVLEIRRVVEEVENPDRDIPLEEAKKYDPEVQVGEEMEFPVDPDEFSRIAVQAAK 120 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++EAER+R Y E+KD+ GEII+G V RV+ GNV VDLG + ++ E I E Sbjct: 121 QILTQRLKEAERNRVYEEYKDREGEIITGQVTRVDNRGNVYVDLGRGEALMPPREQIPGE 180 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG RVK Y+ +VRR +GP +++SR H + + L EVPEI G V++K V+R+PG Sbjct: 181 RYHPGQRVKVYLKEVRRSSKGPSLIVSRAHEELLKYLMRQEVPEIAEGTVEIKVVAREPG 240 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV S + ++DP+GAC+G +G R+QAV EL EKID++ WS + F+ NAL PA Sbjct: 241 SRSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGREKIDVIPWSSNPREFIRNALSPA 300 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V + +D + GR V V K+Q S+AIGR GQNVRLAS+LTG+ ID EE S Sbjct: 301 TVGNIEIDTEAGRAVVSVGKDQHSVAIGRGGQNVRLASKLTGFEIDFKEAEEVS 354 >gi|153938223|ref|YP_001391719.1| transcription elongation factor NusA [Clostridium botulinum F str. Langeland] gi|152934119|gb|ABS39617.1| N utilization substance protein A [Clostridium botulinum F str. Langeland] gi|295319745|gb|ADG00123.1| N utilization substance protein A [Clostridium botulinum F str. 230613] Length = 439 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/360 (41%), Positives = 244/360 (67%), Gaps = 9/360 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I ++ Sbjct: 4 EFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIKVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R +++K Sbjct: 124 EEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 +D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V ++D Sbjct: 244 NDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT----EEEDSINRQKDFNER 358 E+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI + E+E ++N + +E+ Sbjct: 304 EENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKDEK 363 >gi|257887083|ref|ZP_05666736.1| transcription termination factor NusA [Enterococcus faecium 1,141,733] gi|257823137|gb|EEV50069.1| transcription termination factor NusA [Enterococcus faecium 1,141,733] Length = 391 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/362 (41%), Positives = 229/362 (63%), Gaps = 3/362 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +Q+ NE + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEQQNETEELHDE 363 Query: 365 AI 366 AI Sbjct: 364 AI 365 >gi|289550942|ref|YP_003471846.1| Transcription termination protein NusA [Staphylococcus lugdunensis HKU09-01] gi|289180474|gb|ADC87719.1| Transcription termination protein NusA [Staphylococcus lugdunensis HKU09-01] Length = 387 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 219/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|315658444|ref|ZP_07911316.1| transcription termination factor NusA [Staphylococcus lugdunensis M23590] gi|315496773|gb|EFU85096.1| transcription termination factor NusA [Staphylococcus lugdunensis M23590] Length = 387 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 219/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|293570613|ref|ZP_06681664.1| transcription termination factor NusA [Enterococcus faecium E980] gi|291609284|gb|EFF38555.1| transcription termination factor NusA [Enterococcus faecium E980] Length = 391 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/362 (41%), Positives = 229/362 (63%), Gaps = 3/362 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +Q+ NE + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEQQNETEELHDE 363 Query: 365 AI 366 AI Sbjct: 364 AI 365 >gi|30021905|ref|NP_833536.1| transcription elongation factor NusA [Bacillus cereus ATCC 14579] gi|229129092|ref|ZP_04258065.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4] gi|29897461|gb|AAP10737.1| N utilization substance protein A [Bacillus cereus ATCC 14579] gi|228654329|gb|EEL10194.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4] Length = 368 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 224/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKI IV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIAIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|157692343|ref|YP_001486805.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032] gi|157681101|gb|ABV62245.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032] Length = 371 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISVDDAANINPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 340 >gi|229031446|ref|ZP_04187446.1| Transcription elongation protein nusA [Bacillus cereus AH1271] gi|229098285|ref|ZP_04229232.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29] gi|229104378|ref|ZP_04235047.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28] gi|229117302|ref|ZP_04246680.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3] gi|229174482|ref|ZP_04302014.1| Transcription elongation protein nusA [Bacillus cereus MM3] gi|228609042|gb|EEK66332.1| Transcription elongation protein nusA [Bacillus cereus MM3] gi|228666202|gb|EEL21666.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3] gi|228679076|gb|EEL33284.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28] gi|228685183|gb|EEL39114.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29] gi|228729735|gb|EEL80715.1| Transcription elongation protein nusA [Bacillus cereus AH1271] Length = 368 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/352 (42%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|94971244|ref|YP_593292.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|94553294|gb|ABF43218.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 534 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 169/425 (39%), Positives = 254/425 (59%), Gaps = 14/425 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + DA++ EK ID VV++ + D+I A R Y T + R ++ E+G I + + + Sbjct: 4 ELYNVIDALSREKGIDPQVVVTAVEDAIVVATRKFYKTGENFRAVLDKESGQIRAYAVRQ 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV +E+E+ Q+ L+ AR+ DP+ ++GG + GR+A Q AKQVI QKVRE Sbjct: 64 VVINEDELEDPATQVPLEEARELDPAAEVGGELLIEKKTDMLGRIAAQLAKQVIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD Y E+ +VGEI++ T+KR E ++I D+G ++ + + E E+ G+RV+ Sbjct: 124 AERDTVYNEYIGRVGEIVNATMKRNEGPDLIWDIGKAEARMPKKEQSRLESFAIGERVRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V + +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S Sbjct: 184 VITRVEKASKGPQVIVSRAAPELVSHLFQTEVPEIYDNTVVIRAIAREAGERTKIAVMSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 D +D VGACVGM+G RVQ+++ ELR EKIDI+ + D+ TF AL+PA V++V +L+ Sbjct: 244 DKDVDAVGACVGMKGMRVQSIIRELRGEKIDIIEYHEDAVTFAEKALQPAKVSRVTILES 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE RQ+ + + Sbjct: 304 GDKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEE---KRQEVEQQMSALVN 360 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 +I ++ E I L A G VE LA + ++ + G +T +I Y Sbjct: 361 PSITPLDKVPDLGEAIIEKLSAAGINSVEALADMTPEQLEEVPGIGPKTVDKIFVAVNAY 420 Query: 417 LEGID 421 +D Sbjct: 421 FSALD 425 >gi|218661268|ref|ZP_03517198.1| transcription elongation factor NusA [Rhizobium etli IE4771] Length = 189 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 140/189 (74%), Positives = 163/189 (86%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 MVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV Sbjct: 1 MVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120 Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 VRLASQLTGW IDI+TE E+S RQK+FNERT FM +++VDE++ +L +EGFA VEEL Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEEL 180 Query: 388 ACVKISEIA 396 A V + EI+ Sbjct: 181 AYVDLDEIS 189 >gi|148380376|ref|YP_001254917.1| N utilization substance protein A [Clostridium botulinum A str. ATCC 3502] gi|153933708|ref|YP_001384596.1| transcription elongation factor NusA [Clostridium botulinum A str. ATCC 19397] gi|153936194|ref|YP_001388112.1| transcription elongation factor NusA [Clostridium botulinum A str. Hall] gi|170761276|ref|YP_001787732.1| transcription elongation factor NusA [Clostridium botulinum A3 str. Loch Maree] gi|226949774|ref|YP_002804865.1| N utilization substance protein A [Clostridium botulinum A2 str. Kyoto] gi|148289860|emb|CAL83968.1| putative transcription elongation protein NusA [Clostridium botulinum A str. ATCC 3502] gi|152929752|gb|ABS35252.1| transcription termination factor NusA [Clostridium botulinum A str. ATCC 19397] gi|152932108|gb|ABS37607.1| N utilization substance protein A [Clostridium botulinum A str. Hall] gi|169408265|gb|ACA56676.1| N utilization substance protein A [Clostridium botulinum A3 str. Loch Maree] gi|226843922|gb|ACO86588.1| N utilization substance protein A [Clostridium botulinum A2 str. Kyoto] gi|322806687|emb|CBZ04256.1| transcription termination protein NusA [Clostridium botulinum H04402 065] Length = 457 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/339 (42%), Positives = 231/339 (68%), Gaps = 5/339 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I ++ Sbjct: 4 EFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIKVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R +++K Sbjct: 124 EEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 +D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V ++D Sbjct: 244 NDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E+ +V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 EENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 342 >gi|332686768|ref|YP_004456542.1| transcription termination protein NusA [Melissococcus plutonius ATCC 35311] gi|332370777|dbj|BAK21733.1| transcription termination protein NusA [Melissococcus plutonius ATCC 35311] Length = 396 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 141/338 (41%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ EK I +++V+ + ++ A + YG ++ VE N + GDI ++ + E Sbjct: 4 EILNALNALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFNNKKGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + +I+L+ A + + +IG V+ + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEIALEDALAINGAYEIGDVIHFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E + DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQAHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +++R+ G R+K+AV S D + Sbjct: 184 KVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSIAREAGDRSKIAVRSIDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D ++ NAL PA V V+ D + + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPVVYISNALNPAQVVDVIFDPENNK 303 Query: 308 I-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + ++VP QLSLAIG+RGQN RLA++LTG+ IDI E Sbjct: 304 VCTIVVPDHQLSLAIGKRGQNARLAAKLTGFKIDIKAE 341 >gi|325479444|gb|EGC82540.1| transcription termination factor NusA [Anaerococcus prevotii ACS-065-V-Col13] Length = 425 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 141/344 (40%), Positives = 226/344 (65%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 D + EK +D+ +L + ++ K+ + Y ++ V I+ E+G I +F L VVEEVE Sbjct: 10 DELCKEKGLDKATILDALKKALIKSYQKNYDNQENVDVIIDEESGKIEVFALKNVVEEVE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +IS+K A+ + + D+G VV L P +FGRVA Q+A+ ++IQK+R+A+RD Y E Sbjct: 70 DSISEISIKDAKKVNSTYDLGDVVRIELTPKNFGRVAAQTARNIVIQKIRDAQRDSLYGE 129 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + ++ E+I+G ++R + N+ V+L +GV+ E + EN P +R+K I +VR Sbjct: 130 YIERSNEMITGLIQRADNYNLYVNLDKIEGVVPLKEQVPTENYAPNERMKFLIKEVRNSS 189 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 + PQ++LSR+ + +LF +EVPEI G++++ +++R+ GSR K+AVFS+D +ID VGA Sbjct: 190 KDPQIILSRSSQDLITRLFELEVPEITEGVIEIYSIAREAGSRTKMAVFSNDETIDAVGA 249 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 C+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + V+++E + V+V Sbjct: 250 CIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIDVIVNEKNKQSLVVVS 309 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +QLSLAIG+ GQN RLA++LTGW IDI ++EE Q D +E Sbjct: 310 SDQLSLAIGKEGQNARLAARLTGWKIDIKSKEEFDTLSQDDIDE 353 >gi|168180700|ref|ZP_02615364.1| N utilization substance protein A [Clostridium botulinum NCTC 2916] gi|182668525|gb|EDT80504.1| N utilization substance protein A [Clostridium botulinum NCTC 2916] Length = 457 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 144/339 (42%), Positives = 231/339 (68%), Gaps = 5/339 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I ++ Sbjct: 4 EFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIKVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R +++K Sbjct: 124 EEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 +D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V ++D Sbjct: 244 NDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E+ +V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 EENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 342 >gi|229012999|ref|ZP_04170164.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048] gi|228748253|gb|EEL98113.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048] Length = 364 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/341 (42%), Positives = 219/341 (64%), Gaps = 10/341 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I +D+++ + ++ A + + ++RV NPE G I + +VV+ V + + Sbjct: 11 EKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKDVVDNVFDPRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Y EF D+ Sbjct: 71 ISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAERGVIYSEFSDRE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +I+ G V+R + + V LG + ++ E + E +P DR++ +I V + +GPQ+ Sbjct: 131 EDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFITKVEKTTKGPQI 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + +DPVG+CVG + Sbjct: 191 YVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENIDVDPVGSCVGPK 250 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE V+VP QLS Sbjct: 251 GQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKATTVVVPDHQLS 310 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 LAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 311 LAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 351 >gi|257878526|ref|ZP_05658179.1| transcription termination factor NusA [Enterococcus faecium 1,230,933] gi|257894715|ref|ZP_05674368.1| transcription termination factor NusA [Enterococcus faecium 1,231,408] gi|294618723|ref|ZP_06698255.1| transcription termination factor NusA [Enterococcus faecium E1679] gi|257812754|gb|EEV41512.1| transcription termination factor NusA [Enterococcus faecium 1,230,933] gi|257831094|gb|EEV57701.1| transcription termination factor NusA [Enterococcus faecium 1,231,408] gi|291595036|gb|EFF26381.1| transcription termination factor NusA [Enterococcus faecium E1679] Length = 391 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 218/338 (64%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNSK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSE 341 >gi|331269630|ref|YP_004396122.1| NusA antitermination factor [Clostridium botulinum BKT015925] gi|329126180|gb|AEB76125.1| NusA antitermination factor [Clostridium botulinum BKT015925] Length = 348 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/341 (42%), Positives = 224/341 (65%), Gaps = 5/341 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I ++ Sbjct: 4 EFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + +EE +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 -AQKRIEEDPLTINEISLEEAREFNPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQRIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D++K Sbjct: 123 EAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDKLK 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV+S Sbjct: 183 LYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAVYS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++D GACVG +G RVQ +VTEL++EKIDI+ W D ++ NAL PA V V +DE Sbjct: 243 NDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKDPEKYIANALSPARVVSVEIDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +++V QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 303 ENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSE 343 >gi|49316|emb|CAA79231.1| ORF2 [Bacillus subtilis subsp. subtilis str. 168] Length = 371 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 224/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+A +V+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTANEVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|170754323|ref|YP_001781964.1| transcription elongation factor NusA [Clostridium botulinum B1 str. Okra] gi|169119535|gb|ACA43371.1| N utilization substance protein A [Clostridium botulinum B1 str. Okra] Length = 457 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 144/339 (42%), Positives = 232/339 (68%), Gaps = 5/339 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I ++ Sbjct: 4 EFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIKVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R +++K Sbjct: 124 EEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 +D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V ++D Sbjct: 244 NDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E+ V+V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 EENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 342 >gi|304439999|ref|ZP_07399892.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371491|gb|EFM25104.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 412 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/335 (43%), Positives = 227/335 (67%), Gaps = 1/335 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E + + + EK I +D+V + ++ + + +G + +I V+IN E G+I +F+ + Sbjct: 4 EFILALNQLESEKGIKKDIVFEALEAALISSYKKNFGMSNQNIVVDINKENGNIKIFKEM 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EVE+ +ISL+ A + +G +V + PM FGR+A Q+AKQV+IQK+++AE Sbjct: 64 TVVDEVEDEDTEISLEDAEEISSKYKVGSIVRIEIDPMKFGRIAAQTAKQVVIQKIKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 +D Y +F D+ GE+I+G V+R G V +DLG S+G++ +E I E+ G+R K I Sbjct: 124 KDIIYDDFIDREGELITGQVQRSSKGYVFIDLGKSEGILPPNEQIKGEDYSHGNRYKMII 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ++LSR+HP + +LF +EVPEI++GIV+V +SR+ GSR K+AVFS Sbjct: 184 LEVKKTPKGPQIILSRSHPNLIKRLFELEVPEIHDGIVEVFNISREAGSRTKIAVFSKSE 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DP+GACVG +G+RV+A++ + +EKIDI++W D F+ NAL P+ V KV +D+ Sbjct: 244 DVDPLGACVGFKGARVKAILDSIGEEKIDIIIWDRDIDHFIANALSPSNVEKVFIDDSNK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V+VP QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 304 QALVVVPDYQLSLAIGKEGQNVRLAAKLTNWKIDI 338 >gi|328950381|ref|YP_004367716.1| NusA antitermination factor [Marinithermus hydrothermalis DSM 14884] gi|328450705|gb|AEB11606.1| NusA antitermination factor [Marinithermus hydrothermalis DSM 14884] Length = 397 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 143/344 (41%), Positives = 218/344 (63%), Gaps = 10/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETG 58 E ++ VA E+ + + ++ +++ KA G + V ++P+ G Sbjct: 4 EFVEALQHVALERGVSPEELIQAFEEALAKAYVRQKGFRPKEVEEGKGPLVEVHLDPQQG 63 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 I + + VVE+VEN +I+L A DP + +G + P+ P +F R+AVQ+AKQ++ Sbjct: 64 TIEVLEIKRVVEKVENPEREIALADALTYDPEVQVGEEMEFPVDPEEFSRIAVQTAKQIL 123 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 Q+++EAER+R Y E+KDK GEI++G V RV+ GNV VDLG + ++ E I E Sbjct: 124 TQRLKEAERNRVYEEYKDKKGEILTGQVTRVDNRGNVYVDLGRGEALMPPREQIPTERYY 183 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PG R+K Y+ +V+R +GP +++SR H + + L EVPEI G+V+VKA++R+PGSR+ Sbjct: 184 PGQRIKVYLKEVQRSSKGPSLIVSRAHEELLRYLLKQEVPEIAEGVVEVKAIAREPGSRS 243 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WSP+ F+ NAL PA V Sbjct: 244 KVAVMSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSPNPREFIRNALSPATVG 303 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +D + G V V K+Q SLAIG+ GQNVRLAS+LTG+ ID Sbjct: 304 AIEIDPETGHAAVTVAKDQHSLAIGKAGQNVRLASKLTGYEIDF 347 >gi|297588445|ref|ZP_06947088.1| transcription termination factor NusA [Finegoldia magna ATCC 53516] gi|297573818|gb|EFH92539.1| transcription termination factor NusA [Finegoldia magna ATCC 53516] Length = 424 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 145/340 (42%), Positives = 218/340 (64%), Gaps = 6/340 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM------SDIRVEINPETGDIS 61 + ++ D + K I R+VV + ++ K+ + S + V IN + G ++ Sbjct: 4 DFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGKVN 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+ + VVE VE+ +ISL+ A+ D+G V + P +FGR+A Q+A+ ++IQK Sbjct: 64 LYAIKTVVENVEDKNTEISLEEAKTIKRKYDLGDKVKIEITPKNFGRIAAQTARNIVIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P R Sbjct: 124 LKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKSEEYTPNKR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+AV Sbjct: 184 LKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V + Sbjct: 244 FSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIATFI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 DE VIV ++QLSLAIG+ GQN RLA++LT W IDI Sbjct: 304 DEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDI 343 >gi|301300268|ref|ZP_07206477.1| transcription termination factor NusA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214374|gb|ADJ78790.1| N utilization substance protein A [Lactobacillus salivarius CECT 5713] gi|300852109|gb|EFK79784.1| transcription termination factor NusA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 375 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + E Sbjct: 4 ELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ ER Sbjct: 64 VVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K YIY Sbjct: 124 EVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++ Sbjct: 184 KVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDG 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 +DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V DE+ Sbjct: 244 VDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 ACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSE 341 >gi|30263819|ref|NP_846196.1| transcription elongation factor NusA [Bacillus anthracis str. Ames] gi|42782904|ref|NP_980151.1| transcription elongation factor NusA [Bacillus cereus ATCC 10987] gi|47529243|ref|YP_020592.1| transcription elongation factor NusA [Bacillus anthracis str. 'Ames Ancestor'] gi|47569093|ref|ZP_00239782.1| transcription termination factor nusA [Bacillus cereus G9241] gi|49186666|ref|YP_029918.1| transcription elongation factor NusA [Bacillus anthracis str. Sterne] gi|49479412|ref|YP_037877.1| transcription elongation factor NusA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141674|ref|YP_085157.1| transcription elongation factor NusA [Bacillus cereus E33L] gi|65321143|ref|ZP_00394102.1| COG0195: Transcription elongation factor [Bacillus anthracis str. A2012] gi|118479036|ref|YP_896187.1| transcription elongation factor NusA [Bacillus thuringiensis str. Al Hakam] gi|165872619|ref|ZP_02217250.1| N utilization substance protein A [Bacillus anthracis str. A0488] gi|167639787|ref|ZP_02398056.1| N utilization substance protein A [Bacillus anthracis str. A0193] gi|170706870|ref|ZP_02897328.1| N utilization substance protein A [Bacillus anthracis str. A0389] gi|177652046|ref|ZP_02934592.1| N utilization substance protein A [Bacillus anthracis str. A0174] gi|190568469|ref|ZP_03021376.1| N utilization substance protein A [Bacillus anthracis Tsiankovskii-I] gi|196042176|ref|ZP_03109459.1| N utilization substance protein A [Bacillus cereus NVH0597-99] gi|196044653|ref|ZP_03111888.1| N utilization substance protein A [Bacillus cereus 03BB108] gi|206978435|ref|ZP_03239302.1| N utilization substance protein A [Bacillus cereus H3081.97] gi|217961236|ref|YP_002339804.1| transcription elongation factor NusA [Bacillus cereus AH187] gi|218904944|ref|YP_002452778.1| N utilization substance protein A [Bacillus cereus AH820] gi|222097260|ref|YP_002531317.1| transcription elongation factor nusa [Bacillus cereus Q1] gi|225865795|ref|YP_002751173.1| N utilization substance protein A [Bacillus cereus 03BB102] gi|227813276|ref|YP_002813285.1| N utilization substance protein A [Bacillus anthracis str. CDC 684] gi|228916453|ref|ZP_04080019.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928864|ref|ZP_04091896.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947535|ref|ZP_04109825.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986959|ref|ZP_04147085.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092856|ref|ZP_04223990.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42] gi|229123329|ref|ZP_04252533.1| Transcription elongation protein nusA [Bacillus cereus 95/8201] gi|229140457|ref|ZP_04269012.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26] gi|229186053|ref|ZP_04313223.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1] gi|229197926|ref|ZP_04324642.1| Transcription elongation protein nusA [Bacillus cereus m1293] gi|229602496|ref|YP_002868054.1| N utilization substance protein A [Bacillus anthracis str. A0248] gi|254721998|ref|ZP_05183787.1| transcription elongation factor NusA [Bacillus anthracis str. A1055] gi|254735854|ref|ZP_05193560.1| transcription elongation factor NusA [Bacillus anthracis str. Western North America USA6153] gi|254756007|ref|ZP_05208038.1| transcription elongation factor NusA [Bacillus anthracis str. Vollum] gi|254759332|ref|ZP_05211357.1| transcription elongation factor NusA [Bacillus anthracis str. Australia 94] gi|301055306|ref|YP_003793517.1| transcription elongation factor NusA [Bacillus anthracis CI] gi|30258463|gb|AAP27682.1| N utilization substance protein A [Bacillus anthracis str. Ames] gi|42738831|gb|AAS42759.1| N utilization substance protein A [Bacillus cereus ATCC 10987] gi|47504391|gb|AAT33067.1| N utilization substance protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|47554255|gb|EAL12617.1| transcription termination factor nusA [Bacillus cereus G9241] gi|49180593|gb|AAT55969.1| N utilization substance protein A [Bacillus anthracis str. Sterne] gi|49330968|gb|AAT61614.1| N utilization substance protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975143|gb|AAU16693.1| N utilization substance protein A [Bacillus cereus E33L] gi|118418261|gb|ABK86680.1| N utilization substance protein A [Bacillus thuringiensis str. Al Hakam] gi|164711651|gb|EDR17197.1| N utilization substance protein A [Bacillus anthracis str. A0488] gi|167512188|gb|EDR87565.1| N utilization substance protein A [Bacillus anthracis str. A0193] gi|170128288|gb|EDS97157.1| N utilization substance protein A [Bacillus anthracis str. A0389] gi|172082415|gb|EDT67480.1| N utilization substance protein A [Bacillus anthracis str. A0174] gi|190560473|gb|EDV14451.1| N utilization substance protein A [Bacillus anthracis Tsiankovskii-I] gi|196024688|gb|EDX63360.1| N utilization substance protein A [Bacillus cereus 03BB108] gi|196027028|gb|EDX65652.1| N utilization substance protein A [Bacillus cereus NVH0597-99] gi|206743350|gb|EDZ54790.1| N utilization substance protein A [Bacillus cereus H3081.97] gi|217063696|gb|ACJ77946.1| N utilization substance protein A [Bacillus cereus AH187] gi|218538022|gb|ACK90420.1| N utilization substance protein A [Bacillus cereus AH820] gi|221241318|gb|ACM14028.1| N utilization substance protein A [Bacillus cereus Q1] gi|225790987|gb|ACO31204.1| N utilization substance protein A [Bacillus cereus 03BB102] gi|227004195|gb|ACP13938.1| N utilization substance protein A [Bacillus anthracis str. CDC 684] gi|228585644|gb|EEK43746.1| Transcription elongation protein nusA [Bacillus cereus m1293] gi|228597472|gb|EEK55122.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1] gi|228643018|gb|EEK99294.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26] gi|228660105|gb|EEL15741.1| Transcription elongation protein nusA [Bacillus cereus 95/8201] gi|228690478|gb|EEL44261.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42] gi|228772737|gb|EEM21177.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812055|gb|EEM58386.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830671|gb|EEM76276.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843032|gb|EEM88114.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266904|gb|ACQ48541.1| N utilization substance protein A [Bacillus anthracis str. A0248] gi|300377475|gb|ADK06379.1| transcription elongation factor NusA [Bacillus cereus biovar anthracis str. CI] gi|324327710|gb|ADY22970.1| transcription elongation factor NusA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 368 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|229157392|ref|ZP_04285470.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342] gi|228626119|gb|EEK82868.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342] Length = 368 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|75760860|ref|ZP_00740874.1| N utilization substance protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902319|ref|ZP_04066476.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 4222] gi|74491644|gb|EAO54846.1| N utilization substance protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857288|gb|EEN01791.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 4222] Length = 368 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 149/352 (42%), Positives = 222/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV N E G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNTEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|257898238|ref|ZP_05677891.1| transcription termination factor NusA [Enterococcus faecium Com15] gi|257836150|gb|EEV61224.1| transcription termination factor NusA [Enterococcus faecium Com15] Length = 391 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/362 (41%), Positives = 228/362 (62%), Gaps = 3/362 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQIKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +Q+ NE + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEQQNETEELHDE 363 Query: 365 AI 366 AI Sbjct: 364 AI 365 >gi|293556649|ref|ZP_06675214.1| transcription termination factor NusA [Enterococcus faecium E1039] gi|291601184|gb|EFF31471.1| transcription termination factor NusA [Enterococcus faecium E1039] Length = 391 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 218/338 (64%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSE 341 >gi|90961545|ref|YP_535461.1| transcription elongation factor NusA [Lactobacillus salivarius UCC118] gi|227890633|ref|ZP_04008438.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC 11741] gi|90820739|gb|ABD99378.1| N utilization substance protein A [Lactobacillus salivarius UCC118] gi|227867571|gb|EEJ74992.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC 11741] Length = 375 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + E Sbjct: 4 ELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ ER Sbjct: 64 VVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K YIY Sbjct: 124 EVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++ Sbjct: 184 KVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDG 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 +DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V DE+ Sbjct: 244 VDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 ACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSE 341 >gi|320144367|gb|EFW36133.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MRSA177] Length = 391 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRVEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|152976182|ref|YP_001375699.1| transcription elongation factor NusA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024934|gb|ABS22704.1| NusA antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 366 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 143/337 (42%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQNGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVSVLVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|228935130|ref|ZP_04097957.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824495|gb|EEM70300.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 368 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVLKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|170288839|ref|YP_001739077.1| NusA antitermination factor [Thermotoga sp. RQ2] gi|281412459|ref|YP_003346538.1| NusA antitermination factor [Thermotoga naphthophila RKU-10] gi|170176342|gb|ACB09394.1| NusA antitermination factor [Thermotoga sp. RQ2] gi|281373562|gb|ADA67124.1| NusA antitermination factor [Thermotoga naphthophila RKU-10] Length = 344 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 141/334 (42%), Positives = 224/334 (67%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIRVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|69246862|ref|ZP_00604154.1| Transcription termination factor NusA [Enterococcus faecium DO] gi|257882944|ref|ZP_05662597.1| transcription termination factor NusA [Enterococcus faecium 1,231,502] gi|257884342|ref|ZP_05663995.1| transcription termination factor NusA [Enterococcus faecium 1,231,501] gi|257889277|ref|ZP_05668930.1| transcription termination factor NusA [Enterococcus faecium 1,231,410] gi|260560111|ref|ZP_05832289.1| transcription termination factor NusA [Enterococcus faecium C68] gi|261207401|ref|ZP_05922087.1| transcription termination factor NusA [Enterococcus faecium TC 6] gi|289566677|ref|ZP_06447094.1| transcription termination factor NusA [Enterococcus faecium D344SRF] gi|293560200|ref|ZP_06676702.1| transcription termination factor NusA [Enterococcus faecium E1162] gi|293567723|ref|ZP_06679065.1| transcription termination factor NusA [Enterococcus faecium E1071] gi|294613937|ref|ZP_06693872.1| transcription termination factor NusA [Enterococcus faecium E1636] gi|294620763|ref|ZP_06699970.1| transcription termination factor NusA [Enterococcus faecium U0317] gi|314937505|ref|ZP_07844838.1| transcription termination factor NusA [Enterococcus faecium TX0133a04] gi|314942164|ref|ZP_07849018.1| transcription termination factor NusA [Enterococcus faecium TX0133C] gi|314947496|ref|ZP_07850911.1| transcription termination factor NusA [Enterococcus faecium TX0082] gi|314951483|ref|ZP_07854532.1| transcription termination factor NusA [Enterococcus faecium TX0133A] gi|314992573|ref|ZP_07857991.1| transcription termination factor NusA [Enterococcus faecium TX0133B] gi|314995492|ref|ZP_07860592.1| transcription termination factor NusA [Enterococcus faecium TX0133a01] gi|68195043|gb|EAN09506.1| Transcription termination factor NusA [Enterococcus faecium DO] gi|257818602|gb|EEV45930.1| transcription termination factor NusA [Enterococcus faecium 1,231,502] gi|257820180|gb|EEV47328.1| transcription termination factor NusA [Enterococcus faecium 1,231,501] gi|257825637|gb|EEV52263.1| transcription termination factor NusA [Enterococcus faecium 1,231,410] gi|260073946|gb|EEW62270.1| transcription termination factor NusA [Enterococcus faecium C68] gi|260078292|gb|EEW65997.1| transcription termination factor NusA [Enterococcus faecium TC 6] gi|289161536|gb|EFD09419.1| transcription termination factor NusA [Enterococcus faecium D344SRF] gi|291589566|gb|EFF21372.1| transcription termination factor NusA [Enterococcus faecium E1071] gi|291593212|gb|EFF24786.1| transcription termination factor NusA [Enterococcus faecium E1636] gi|291599743|gb|EFF30753.1| transcription termination factor NusA [Enterococcus faecium U0317] gi|291605872|gb|EFF35304.1| transcription termination factor NusA [Enterococcus faecium E1162] gi|313590326|gb|EFR69171.1| transcription termination factor NusA [Enterococcus faecium TX0133a01] gi|313592865|gb|EFR71710.1| transcription termination factor NusA [Enterococcus faecium TX0133B] gi|313596323|gb|EFR75168.1| transcription termination factor NusA [Enterococcus faecium TX0133A] gi|313599087|gb|EFR77932.1| transcription termination factor NusA [Enterococcus faecium TX0133C] gi|313643146|gb|EFS07726.1| transcription termination factor NusA [Enterococcus faecium TX0133a04] gi|313646046|gb|EFS10626.1| transcription termination factor NusA [Enterococcus faecium TX0082] Length = 391 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 218/338 (64%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT IDI +E Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSE 341 >gi|227499286|ref|ZP_03929398.1| transcription termination factor NusA [Anaerococcus tetradius ATCC 35098] gi|227218637|gb|EEI83871.1| transcription termination factor NusA [Anaerococcus tetradius ATCC 35098] Length = 407 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 242/381 (63%), Gaps = 11/381 (2%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I ++ L E+V+EV Sbjct: 10 DELCKEKNLDKPTILDALQKALIKSYQKNYDNQENVDVIIDEETGKIEVYALKEIVDEVN 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISLK AR +P+ +G + L P +FGRVA Q+A+ ++IQK+R+A+RD Y E Sbjct: 70 DNIVEISLKDARVINPTYRLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDAQRDSLYGE 129 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + ++ E+I+GT++R + NV V+L +G++ E +S E P R+K I +VR Sbjct: 130 YIERANEMITGTIQREDKYNVYVNLDKIEGIVPAKEQVSTEKYLPNARMKFLIKEVRNSS 189 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 + PQ++LSR + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D +ID +GA Sbjct: 190 KEPQIILSRASQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSNDENIDAIGA 249 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 C+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + KV+++E + V+V Sbjct: 250 CIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIKVLVNEKNKQSLVVVA 309 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE---------DSINRQKDFNERTQFFMQ 364 +QLSLAIG+ GQN RLA++LTGW IDI + EE D I + +E +Q + Sbjct: 310 SDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEFEKLSQVDIDEILGLNELDEESQLSEE 369 Query: 365 AINVDEIIAHLLVAEGFADVE 385 +++ DE L V+E + + E Sbjct: 370 SLSKDE--EDLEVSEDYDNKE 388 >gi|302387320|ref|YP_003823142.1| transcription termination factor NusA [Clostridium saccharolyticum WM1] gi|302197948|gb|ADL05519.1| transcription termination factor NusA [Clostridium saccharolyticum WM1] Length = 400 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + E +I +D +L + +S+ A ++ +G +I+V IN ET D ++F E Sbjct: 4 ELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNIKVSINRETCDFNVFAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A+ DP D+G V+ P+ FGR+A Q+AK VI+QK+RE R Sbjct: 64 VVETVEDPLLQISLAEAKMTDPKYDVGDVIHCPIDSKKFGRIATQNAKNVILQKIREEGR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ + E+++G V+R NV ++LG D ++ E + E + +R+K ++ Sbjct: 124 KSLFNDWYCQEREVVTGIVQRYLGRNVSINLGKVDAILNETEMVKGEVFKATERIKVFVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D++ Sbjct: 184 EVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSNDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE Sbjct: 244 VDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEVSKE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|300854498|ref|YP_003779482.1| transcription elongation protein [Clostridium ljungdahlii DSM 13528] gi|300434613|gb|ADK14380.1| transcription elongation protein [Clostridium ljungdahlii DSM 13528] Length = 354 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 141/338 (41%), Positives = 223/338 (65%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y +++V +N E G+I ++ Sbjct: 4 EFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYMGHGAGSQNVKVTMNRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV + +IS++ A+ D S ++G + + + P FGRVA Q+AKQV+IQ+++ Sbjct: 64 SQKNVVEEVCDKFGEISVEDAKSMDSSYEVGDIANIEVTPRKFGRVAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y +F +K +II+GTV R + NV++DLG ++ V+ +E I E D++K Sbjct: 124 EEERRIIYSDFAEKEDDIITGTVIRKDKNNVLIDLGKTEAVLGPNEQIPGEKYNFNDKLK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V +K+++R+ GSR K+AV S Sbjct: 184 LYIIEVKNTTKGAQIVISRTHPGLIKRLFELEVPEIFDGTVDIKSIAREAGSRTKIAVHS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ N+L PA V V L+E Sbjct: 244 NDENVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKLPEEYIANSLSPAKVLDVDLNE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ +++V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 DIKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|331082958|ref|ZP_08332078.1| transcription termination factor NusA [Lachnospiraceae bacterium 6_1_63FAA] gi|330399953|gb|EGG79611.1| transcription termination factor NusA [Lachnospiraceae bacterium 6_1_63FAA] Length = 384 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D + Sbjct: 4 ELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K YI Sbjct: 124 KVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D Sbjct: 184 EVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D + Sbjct: 244 VDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|260438329|ref|ZP_05792145.1| transcription termination factor NusA [Butyrivibrio crossotus DSM 2876] gi|292808916|gb|EFF68121.1| transcription termination factor NusA [Butyrivibrio crossotus DSM 2876] Length = 366 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 138/339 (40%), Positives = 220/339 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ D + EK I + V++ + +S+ A ++ +G + +++ +TGD + E Sbjct: 4 ELITALDILEKEKKISKKVLIEAIENSLLAACKNHFGKNENFTAKVDTKTGDFKVTAAKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL A+ P +IG ++ + +FGR+AVQ++K I+QK+RE ER Sbjct: 64 VVETVEDSVTQISLADAQMISPKYNIGDTINVEIKSAEFGRIAVQNSKSAILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K +I++G V R N++++LG +D ++ + + E +P DR+K Y+ Sbjct: 124 QAVYNEYHAKEKDIVTGIVSRYAGNNLVINLGRADAILSEADMVKGEKYKPNDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ E++G ++ +SR HP+F+ +LF EV E+ +G V++++++R+ GSR K+AV+S + + Sbjct: 184 EVKTEKKGLKIAVSRCHPEFVKRLFEAEVAELRDGTVEIRSIAREAGSRTKMAVWSKNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG+ GSRV AVV+EL EKIDI+ WS + A + NAL PA V V D + Sbjct: 244 VDPVGSCVGVNGSRVNAVVSELNGEKIDIINWSKNPANLIENALSPAKVVYVAADAEEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIGR GQN RLA++LTG+ IDI +E + Sbjct: 304 AQVIVPDYQLSLAIGREGQNARLAARLTGFKIDIKSESQ 342 >gi|15644522|ref|NP_229574.1| transcription elongation factor NusA [Thermotoga maritima MSB8] gi|16975175|pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima gi|4982355|gb|AAD36840.1|AE001815_14 N utilization substance protein A [Thermotoga maritima MSB8] Length = 344 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 141/334 (42%), Positives = 224/334 (67%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|320108355|ref|YP_004183945.1| NusA antitermination factor [Terriglobus saanensis SP1PR4] gi|319926876|gb|ADV83951.1| NusA antitermination factor [Terriglobus saanensis SP1PR4] Length = 562 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 167/420 (39%), Positives = 248/420 (59%), Gaps = 14/420 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF---RL 65 L Q + ++ +K ID +V+ + D+I A R Y T ++R E + E+G+I + + Sbjct: 5 LYQAIELMSRDKGIDPQIVVGAVEDAIALATRKFYKTQENMRGEFDKESGEIRAYVYKTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +E E+VE+ Q++L A++ +++G + GR+A Q AKQVI QKVREA Sbjct: 65 VEGAEQVEDAENQLTLDQAKELAGEVEVGAELRFYKDTSPLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ +VGEI++ TVKRVE +VIVDL ++ + + E E G+R++ Sbjct: 125 ERDTVFNEYNHRVGEILNATVKRVEPMDVIVDLDKAEARMPKREQSRLEQFAVGERIRVA 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D Sbjct: 185 LIRVDRAAKGPQVIVSRAAPSLVQNLFQSEVPEIYDGTVMIRAIAREAGERTKIAVVSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V +V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEITTFAEKALQPAKVARVSITDLA 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 +IEVIV QLSLAIG++GQNVRLA++L GW IDI +EEE RQ+ + + Sbjct: 305 EKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEE---KRQEVEQQMSAMQGA 361 Query: 362 ----FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q + E + L+A G VE LA + E+ + G E++ +I R Y Sbjct: 362 PQTPIEQVTELGESVLEKLIAAGITTVESLADMTAEELEEVPGIGEKSVEKITVAVRHYF 421 >gi|314933445|ref|ZP_07840810.1| transcription termination factor NusA [Staphylococcus caprae C87] gi|313653595|gb|EFS17352.1| transcription termination factor NusA [Staphylococcus caprae C87] Length = 407 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+ G + V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSEKPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|315652148|ref|ZP_07905146.1| transcription termination factor NusA [Eubacterium saburreum DSM 3986] gi|315485640|gb|EFU76024.1| transcription termination factor NusA [Eubacterium saburreum DSM 3986] Length = 386 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/333 (43%), Positives = 220/333 (66%), Gaps = 6/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV------E 73 K+I + +L + +S+ A ++ +GT +++V +NP T D S+ + EVVE + E Sbjct: 16 KNISKAAILEAIENSLISACKNSFGTADNVKVSVNPTTCDYSIIQAKEVVESLGNKPSLE 75 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + + Sbjct: 76 DRATKISLAEARMQNPNLGVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + K +I+SG V R N+ ++LG D V+ E + E+L+ GDR+K ++ +V+ Sbjct: 136 YYMKERDIVSGVVTRFMGKNIAINLGKIDAVLAESEQVKGEDLKLGDRLKVFVLEVKDNP 195 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++ +SRTHP+F+ +LF +VPEI +G+V++K+++R+ GSR K+AV S + IDPVGA Sbjct: 196 KGPRISVSRTHPEFVKRLFEAQVPEIRDGVVEIKSIAREAGSRTKIAVCSHEPDIDPVGA 255 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVG+ G RV AVV ELRDEK+DIV W + A + NAL PA V VV DE+ +VIVP Sbjct: 256 CVGVDGVRVNAVVEELRDEKVDIVNWDDNPAYLIENALSPAKVIAVVADEETKEADVIVP 315 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 348 >gi|260589530|ref|ZP_05855443.1| transcription termination factor NusA [Blautia hansenii DSM 20583] gi|260540098|gb|EEX20667.1| transcription termination factor NusA [Blautia hansenii DSM 20583] Length = 384 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D + Sbjct: 4 ELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K YI Sbjct: 124 KVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D Sbjct: 184 EVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D + Sbjct: 244 VDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|148270198|ref|YP_001244658.1| transcription elongation factor NusA [Thermotoga petrophila RKU-1] gi|147735742|gb|ABQ47082.1| NusA antitermination factor [Thermotoga petrophila RKU-1] Length = 344 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 223/334 (66%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QIS++ A+ DP ++G VV L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISIEEAKKVDPLAEVGSVVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E + GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTGEWADIRIGKLETRLPKKEWIPDEEIEAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVSSNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVIVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|217967593|ref|YP_002353099.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724] gi|217336692|gb|ACK42485.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 360 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/335 (43%), Positives = 219/335 (65%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + + EK +D++VVL + ++ A + YGT RVEIN +I+++ + ++VE+ Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEINIYVVKKIVEK 69 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ P IG + + P +FGR+AVQ AKQVI+Q ++EAER Y Sbjct: 70 VNDNISEISLEEAKSLKPDAKIGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERKILY 129 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++K K GE+++GTV RVE GNV V + + ++ E I E G R+++Y+ +VR+ Sbjct: 130 EKYKAKEGELVNGTVVRVEKGNVYVRFPDIEAILPVKEQIPGEEYWIGRRLRAYLLEVRK 189 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+ Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + ED + VI Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPLSVEIREDEHKAIVI 309 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQ 344 >gi|37926540|pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A Structure-Based Role Of The N-Terminal Domain Length = 369 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 141/334 (42%), Positives = 224/334 (67%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 30 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 89 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 90 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 149 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 150 KQFEKYSELKGTVTTAEVIRVXGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 209 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 210 VVKTTKGPKILVSRRVPEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 269 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 270 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 329 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 330 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 363 >gi|303233744|ref|ZP_07320398.1| transcription termination factor NusA [Finegoldia magna BVS033A4] gi|302495178|gb|EFL54930.1| transcription termination factor NusA [Finegoldia magna BVS033A4] Length = 422 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/340 (42%), Positives = 218/340 (64%), Gaps = 6/340 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM------SDIRVEINPETGDIS 61 + ++ D + K I R+VV + ++ K+ + S + V IN + G ++ Sbjct: 4 DFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGKVN 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++IQK Sbjct: 64 LYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P R Sbjct: 124 LKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPNKR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+AV Sbjct: 184 LKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V + Sbjct: 244 FSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIATFI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 DE VIV ++QLSLAIG+ GQN RLA++LT W IDI Sbjct: 304 DEGQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDI 343 >gi|312898335|ref|ZP_07757725.1| transcription termination factor NusA [Megasphaera micronuciformis F0359] gi|310620254|gb|EFQ03824.1| transcription termination factor NusA [Megasphaera micronuciformis F0359] Length = 375 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/339 (43%), Positives = 217/339 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++ EK + DV+ + + A + Y + V ++ TGD S+ Sbjct: 4 ELLSAIEYLSKEKGVTADVICDSLEAVLITAYKKEYDGNPNATVRLDRLTGDYSIVSPKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISL+ AR D + G + + P +FGR+A Q+AKQV+IQ++REAER Sbjct: 64 VVAEVADEENEISLEDARAIDKGYEEGDEILVDVTPKNFGRIAAQAAKQVMIQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF + +II+G ++R+E NV +DLG ++ V+ E I E G R+K Y+ Sbjct: 124 NIVYDEFYGRTDDIITGIIQRIEQKNVYIDLGKAEAVLPYSEQIPTEEYTVGQRIKCYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR +G Q+ LSRTHP + +LF +EVPEIY+G+V++ +V+R+PG R+K+AV+S D + Sbjct: 184 EVRNSPKGAQIQLSRTHPGLLKRLFELEVPEIYDGVVELHSVAREPGKRSKIAVYSRDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG +G+RVQ +V EL++EKIDIV W D A ++ NAL PA V V +DE Sbjct: 244 VDCVGACVGPKGARVQNIVMELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEGAKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Sbjct: 304 SVVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQ 342 >gi|169824466|ref|YP_001692077.1| transcription terminator [Finegoldia magna ATCC 29328] gi|167831271|dbj|BAG08187.1| transcription terminator [Finegoldia magna ATCC 29328] Length = 422 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/340 (42%), Positives = 218/340 (64%), Gaps = 6/340 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM------SDIRVEINPETGDIS 61 + ++ D + K I R+VV + ++ K+ + S + V IN + G ++ Sbjct: 4 DFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGKVN 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++IQK Sbjct: 64 LYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P R Sbjct: 124 LKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPNKR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+AV Sbjct: 184 LKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V + Sbjct: 244 FSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIATFI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 DE VIV ++QLSLAIG+ GQN RLA++LT W IDI Sbjct: 304 DEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDI 343 >gi|167635811|ref|ZP_02394120.1| N utilization substance protein A [Bacillus anthracis str. A0442] gi|170687901|ref|ZP_02879115.1| N utilization substance protein A [Bacillus anthracis str. A0465] gi|254683477|ref|ZP_05147337.1| transcription elongation factor NusA [Bacillus anthracis str. CNEVA-9066] gi|254739620|ref|ZP_05197314.1| transcription elongation factor NusA [Bacillus anthracis str. Kruger B] gi|167528768|gb|EDR91526.1| N utilization substance protein A [Bacillus anthracis str. A0442] gi|170668217|gb|EDT18966.1| N utilization substance protein A [Bacillus anthracis str. A0465] Length = 368 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 223/352 (63%), Gaps = 10/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGIIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------EEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E EEDS+ Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSV 355 >gi|228992544|ref|ZP_04152471.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM 12442] gi|228998592|ref|ZP_04158179.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17] gi|229006092|ref|ZP_04163780.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4] gi|228755168|gb|EEM04525.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4] gi|228761060|gb|EEM10019.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17] gi|228767178|gb|EEM15814.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM 12442] Length = 366 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 219/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPIEYVANALSPSQVVKVLVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSE 340 >gi|257425320|ref|ZP_05601745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 55/2053] gi|257427981|ref|ZP_05604379.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430614|ref|ZP_05606996.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus 68-397] gi|257433374|ref|ZP_05609732.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus E1410] gi|257436216|ref|ZP_05612263.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M876] gi|282914043|ref|ZP_06321830.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M899] gi|282924088|ref|ZP_06331764.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C101] gi|293501075|ref|ZP_06666926.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 58-424] gi|293510037|ref|ZP_06668745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M809] gi|293526623|ref|ZP_06671308.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M1015] gi|257271777|gb|EEV03915.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274822|gb|EEV06309.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278742|gb|EEV09361.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus 68-397] gi|257281467|gb|EEV11604.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus E1410] gi|257284498|gb|EEV14618.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M876] gi|282314060|gb|EFB44452.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C101] gi|282322111|gb|EFB52435.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M899] gi|290920695|gb|EFD97758.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M1015] gi|291096080|gb|EFE26341.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 58-424] gi|291466981|gb|EFF09499.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M809] Length = 391 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|282916526|ref|ZP_06324284.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus D139] gi|283770330|ref|ZP_06343222.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus H19] gi|282319013|gb|EFB49365.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus D139] gi|283460477|gb|EFC07567.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus H19] Length = 391 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|49483429|ref|YP_040653.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MRSA252] gi|82750867|ref|YP_416608.1| transcription elongation factor NusA [Staphylococcus aureus RF122] gi|258423893|ref|ZP_05686778.1| transcription termination factor NusA [Staphylococcus aureus A9635] gi|282903821|ref|ZP_06311709.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C160] gi|282905584|ref|ZP_06313439.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908559|ref|ZP_06316389.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910838|ref|ZP_06318641.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WBG10049] gi|282918965|ref|ZP_06326700.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C427] gi|283958009|ref|ZP_06375460.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus A017934/97] gi|295427753|ref|ZP_06820385.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591289|ref|ZP_06949927.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MN8] gi|49241558|emb|CAG40244.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus MRSA252] gi|82656398|emb|CAI80817.1| transcription termination-antitermination factor [Staphylococcus aureus RF122] gi|257845922|gb|EEV69951.1| transcription termination factor NusA [Staphylococcus aureus A9635] gi|282316775|gb|EFB47149.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C427] gi|282325443|gb|EFB55752.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327621|gb|EFB57904.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330876|gb|EFB60390.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595439|gb|EFC00403.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C160] gi|283790158|gb|EFC28975.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus A017934/97] gi|295128111|gb|EFG57745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576175|gb|EFH94891.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MN8] gi|302332872|gb|ADL23065.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus JKD6159] gi|312438354|gb|ADQ77425.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH60] gi|315194154|gb|EFU24547.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS00] gi|323441046|gb|EGA98753.1| transcription elongation factor NusA [Staphylococcus aureus O11] gi|323443915|gb|EGB01526.1| transcription elongation factor NusA [Staphylococcus aureus O46] Length = 391 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|15924256|ref|NP_371790.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu50] gi|15926849|ref|NP_374382.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus N315] gi|148267756|ref|YP_001246699.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus JH9] gi|150393815|ref|YP_001316490.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus JH1] gi|156979587|ref|YP_001441846.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu3] gi|253315622|ref|ZP_04838835.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733496|ref|ZP_04867661.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus TCH130] gi|255006053|ref|ZP_05144654.2| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795678|ref|ZP_05644657.1| transcription termination factor NusA [Staphylococcus aureus A9781] gi|258416081|ref|ZP_05682349.1| transcription termination-antitermination factor [Staphylococcus aureus A9763] gi|258421664|ref|ZP_05684588.1| transcription termination factor NusA [Staphylococcus aureus A9719] gi|258444604|ref|ZP_05692933.1| transcription termination-antitermination factor [Staphylococcus aureus A8115] gi|258447563|ref|ZP_05695707.1| transcription termination-antitermination factor [Staphylococcus aureus A6300] gi|258449405|ref|ZP_05697508.1| transcription termination-antitermination factor [Staphylococcus aureus A6224] gi|258454784|ref|ZP_05702748.1| transcription termination-antitermination factor [Staphylococcus aureus A5937] gi|269202883|ref|YP_003282152.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ED98] gi|282892754|ref|ZP_06300989.1| transcription termination factor NusA [Staphylococcus aureus A8117] gi|282927608|ref|ZP_06335224.1| transcription termination factor NusA [Staphylococcus aureus A10102] gi|295406203|ref|ZP_06816010.1| transcription termination factor NusA [Staphylococcus aureus A8819] gi|296274824|ref|ZP_06857331.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MR1] gi|297244431|ref|ZP_06928314.1| transcription termination factor NusA [Staphylococcus aureus A8796] gi|13701066|dbj|BAB42361.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus N315] gi|14247036|dbj|BAB57428.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus Mu50] gi|147740825|gb|ABQ49123.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus JH9] gi|149946267|gb|ABR52203.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus JH1] gi|156721722|dbj|BAF78139.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus Mu3] gi|253728550|gb|EES97279.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus TCH130] gi|257789650|gb|EEV27990.1| transcription termination factor NusA [Staphylococcus aureus A9781] gi|257839229|gb|EEV63705.1| transcription termination-antitermination factor [Staphylococcus aureus A9763] gi|257842350|gb|EEV66775.1| transcription termination factor NusA [Staphylococcus aureus A9719] gi|257850097|gb|EEV74050.1| transcription termination-antitermination factor [Staphylococcus aureus A8115] gi|257853754|gb|EEV76713.1| transcription termination-antitermination factor [Staphylococcus aureus A6300] gi|257857393|gb|EEV80291.1| transcription termination-antitermination factor [Staphylococcus aureus A6224] gi|257863167|gb|EEV85931.1| transcription termination-antitermination factor [Staphylococcus aureus A5937] gi|262075173|gb|ACY11146.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ED98] gi|282590611|gb|EFB95688.1| transcription termination factor NusA [Staphylococcus aureus A10102] gi|282764751|gb|EFC04876.1| transcription termination factor NusA [Staphylococcus aureus A8117] gi|285816948|gb|ADC37435.1| Transcription termination protein NusA [Staphylococcus aureus 04-02981] gi|294968791|gb|EFG44813.1| transcription termination factor NusA [Staphylococcus aureus A8819] gi|297178461|gb|EFH37707.1| transcription termination factor NusA [Staphylococcus aureus A8796] gi|312829660|emb|CBX34502.1| transcription elongation protein nusA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131060|gb|EFT87044.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS03] gi|329727637|gb|EGG64093.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21172] Length = 391 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|283470481|emb|CAQ49692.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ST398] Length = 391 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|57651836|ref|YP_186142.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus COL] gi|87160356|ref|YP_493856.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194976|ref|YP_499776.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221388|ref|YP_001332210.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509432|ref|YP_001575091.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142500|ref|ZP_03566993.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452565|ref|ZP_05700571.1| transcription termination-antitermination factor [Staphylococcus aureus A5948] gi|262048158|ref|ZP_06021045.1| transcription elongation factor NusA [Staphylococcus aureus D30] gi|262051328|ref|ZP_06023551.1| transcription elongation factor NusA [Staphylococcus aureus 930918-3] gi|282920510|ref|ZP_06328231.1| transcription termination factor NusA [Staphylococcus aureus A9765] gi|284024259|ref|ZP_06378657.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus 132] gi|294848262|ref|ZP_06789009.1| transcription termination factor NusA [Staphylococcus aureus A9754] gi|304381170|ref|ZP_07363823.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286022|gb|AAW38116.1| N utilization substance protein A, putative [Staphylococcus aureus subsp. aureus COL] gi|87126330|gb|ABD20844.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202534|gb|ABD30344.1| transcription termination-antitermination factor, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374188|dbj|BAF67448.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus str. Newman] gi|160368241|gb|ABX29212.1| N utilization substance A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859783|gb|EEV82625.1| transcription termination-antitermination factor [Staphylococcus aureus A5948] gi|259160703|gb|EEW45724.1| transcription elongation factor NusA [Staphylococcus aureus 930918-3] gi|259163724|gb|EEW48279.1| transcription elongation factor NusA [Staphylococcus aureus D30] gi|269940757|emb|CBI49139.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus TW20] gi|282594172|gb|EFB99159.1| transcription termination factor NusA [Staphylococcus aureus A9765] gi|294825062|gb|EFG41484.1| transcription termination factor NusA [Staphylococcus aureus A9754] gi|302751089|gb|ADL65266.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340153|gb|EFM06094.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198508|gb|EFU28837.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS01] gi|320140917|gb|EFW32764.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MRSA131] gi|329313936|gb|AEB88349.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus T0131] gi|329727836|gb|EGG64287.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21189] gi|329733550|gb|EGG69878.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21193] Length = 391 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|304404290|ref|ZP_07385952.1| transcription termination factor NusA [Paenibacillus curdlanolyticus YK9] gi|304347268|gb|EFM13100.1| transcription termination factor NusA [Paenibacillus curdlanolyticus YK9] Length = 366 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 141/340 (41%), Positives = 223/340 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + EK I +D+++ + ++ + + + T ++RV++N TG I ++ Sbjct: 3 MEFIEALQEIEREKGISKDILIDAIEAALISSYKRNFNTAQNVRVDVNRFTGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +I+++ AR+ +P + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 TVVDEVLDSRMEITVEAAREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKS+I Sbjct: 123 RGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSFI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ+++SRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV S + Sbjct: 183 TKVENTTKGPQIIMSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVHSRNV 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS + +V NAL P+ V +V++ E Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELKGEKIDIVRWSENIDEYVANALSPSKVLEVIVFEQEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQ 342 >gi|167766535|ref|ZP_02438588.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1] gi|317498935|ref|ZP_07957218.1| transcription termination factor NusA [Lachnospiraceae bacterium 5_1_63FAA] gi|167711658|gb|EDS22237.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1] gi|291558575|emb|CBL37375.1| transcription termination factor NusA [butyrate-producing bacterium SSC/2] gi|316893768|gb|EFV15967.1| transcription termination factor NusA [Lachnospiraceae bacterium 5_1_63FAA] Length = 395 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/338 (42%), Positives = 223/338 (65%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK ID+DV++ + +S+ A + +G+ ++ V ++ ETGDI ++ + E Sbjct: 3 ELIAALNQLEKEKGIDKDVIMEAIENSLLAACKRDFGSADNVVVNMDRETGDIYVYAIKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ D ++++G V + P DFGR+A A+ VI+QK++E ER Sbjct: 63 VVDEVYDPALEISLGKAKAIDQNLNLGDTVRIEITPKDFGRIAAMHARSVIVQKIKEEER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 Y F K +I++G V+R NV V L + +D ++ + E I E +P +R+K YI Sbjct: 123 RVVYDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFKPTERIKLYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ RGP++L+SRTHP + +LF EV EI +G V++K + R+ GSR K+AV+S+D Sbjct: 183 VEVKETNRGPRILVSRTHPDLVKRLFEKEVAEIQDGTVEIKNIVREAGSRTKMAVWSNDK 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ G+RV A+V +L+ EKIDI+ W+ D F+ NAL P+ V V +D + Sbjct: 243 NVDPVGACVGLNGARVNAIVNDLKGEKIDIINWNEDPCVFIENALSPSKVVSVAVDVEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 EV+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 303 SAEVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|253682577|ref|ZP_04863374.1| transcription termination factor NusA [Clostridium botulinum D str. 1873] gi|253562289|gb|EES91741.1| transcription termination factor NusA [Clostridium botulinum D str. 1873] Length = 348 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/341 (42%), Positives = 223/341 (65%), Gaps = 5/341 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I ++ Sbjct: 4 EFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + +EE +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 -AQKRIEEDPLTINEISLEEAREINPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQRIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D++K Sbjct: 123 EAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDKLK 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV+S Sbjct: 183 LYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAVYS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++D GACVG +G RVQ +V EL++EKIDI+ W D ++ NAL PA V V +DE Sbjct: 243 NDENVDATGACVGPKGMRVQNIVNELKNEKIDIIKWDKDPEKYIANALSPARVVNVEIDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +++V QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 303 ENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSE 343 >gi|258434820|ref|ZP_05688894.1| transcription termination-antitermination factor [Staphylococcus aureus A9299] gi|257849181|gb|EEV73163.1| transcription termination-antitermination factor [Staphylococcus aureus A9299] Length = 391 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPNDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|225848027|ref|YP_002728190.1| transcription termination factor NusA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644454|gb|ACN99504.1| transcription termination factor NusA [Sulfurihydrogenibium azorense Az-Fu1] Length = 370 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/358 (43%), Positives = 226/358 (63%), Gaps = 18/358 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRL 65 ++L + + VA EK+I +V+ + D I A + Y +D I+V + + ++ + Sbjct: 3 IKLKNVIETVAKEKNIPEEVIERALKDGIFVAVKKEYKLRNDQIKVIYDKDKDELKVLIK 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V VE+ +ISL+ A+ +P++D G V PL D GR+A+ AK+VI +KV Sbjct: 63 KKVTPFVEDEKKEISLEEAKKYNPNVDYGKFVEVPLDLEDIGRIALSVAKEVIAEKVSRV 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EFK+ G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDRV++ Sbjct: 123 ERDILYKEFKEYEGKIITGTVRRFEGEDIIVDLGRVEAILPKEEQIPKEKYKIGDRVRAL 182 Query: 186 IYDVRREQR-----------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + V +E + GP ++LSRTHP F+ KL +EVPEI G ++VKA Sbjct: 183 VLKVLKENKYPILEKGKVKRVIKVSEGPLIILSRTHPNFLKKLLEIEVPEIQEGEIEVKA 242 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 V+R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL DEKID++ WS D A FVI Sbjct: 243 VAREPGERAKVAVYTKDKNIDPVGVVVGLKGSRIQNVSNELSDEKIDVIEWSEDPARFVI 302 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 AL PA TK L RIEV VPKE+LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 303 RALSPARPTKYRLLPKEKRIEVAVPKEELSLAIGKNGINAKLAHKLTGWHIDILSEED 360 >gi|320159637|ref|YP_004172861.1| transcription elongation protein NusA [Anaerolinea thermophila UNI-1] gi|319993490|dbj|BAJ62261.1| transcription elongation protein NusA [Anaerolinea thermophila UNI-1] Length = 633 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 147/329 (44%), Positives = 217/329 (65%), Gaps = 6/329 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVE--INPETGDISLFRLLEVVEEVENYT 76 EK + RDV+L + ++ A R + +VE ++ +TG ++++ EVVE+V Sbjct: 15 EKQLPRDVILKALESAMVSAYRRAVNASNAQQVEAKVDLDTGKVTIYAEKEVVEQVREPL 74 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 ++SL+ AR +P + +G ++ P DFGRVA Q+A+QVI Q++R+AER Q + Sbjct: 75 TEVSLEEARRYNPHVQLGDMIVVESTPRDFGRVAAQTARQVIQQRIRDAERQMQLNHYAK 134 Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +VGEI+SG V+ V + + L ++G + R E I E R DRV++ I +V+ RG Sbjct: 135 QVGEIVSGVVQAVNAQGLTIGLEMRAEGTMPRKEMIPGERFRVHDRVRALIAEVKDSPRG 194 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ++LSRTH F+ +L EVPEIY+GIV++++++R+PG RAK+AV ++ IDPVGACV Sbjct: 195 PQIILSRTHRNFLRRLLETEVPEIYHGIVEIRSIAREPGERAKVAVSATQPGIDPVGACV 254 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG---RIEVIV 312 G+RG R+QA+V EL DEKID++ W+ D A ++ AL PA VT V LD+ V+V Sbjct: 255 GIRGVRIQAIVRELHDEKIDVIEWNADPAVYIAKALSPARVTGVYLDDKSSVNKTATVVV 314 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P++QLSLAIGR GQN RLA++LTGW IDI Sbjct: 315 PEDQLSLAIGRDGQNARLAAKLTGWRIDI 343 >gi|21282878|ref|NP_645966.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MW2] gi|49486105|ref|YP_043326.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MSSA476] gi|253731885|ref|ZP_04866050.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208088|ref|ZP_06924519.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912169|ref|ZP_07129612.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH70] gi|21204317|dbj|BAB95014.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus MW2] gi|49244548|emb|CAG42977.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus MSSA476] gi|253724295|gb|EES93024.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887331|gb|EFH26233.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886415|gb|EFK81617.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH70] Length = 391 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|163791587|ref|ZP_02185988.1| transcription elongation factor NusA [Carnobacterium sp. AT7] gi|159873136|gb|EDP67239.1| transcription elongation factor NusA [Carnobacterium sp. AT7] Length = 425 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + E Sbjct: 4 EMLNALNALEQEKGIPKEFVIEALEVALISAYKRNYDQAQNVEVEFDLKKGNIHVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + V + ++ L+ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VADVVYDSRLEVGLEEALELNKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y+ Sbjct: 124 NIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + + Sbjct: 184 KVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSREEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E G Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNEAAGS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 CLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSE 340 >gi|310641593|ref|YP_003946351.1| transcription elongation factor-like protein [Paenibacillus polymyxa SC2] gi|309246543|gb|ADO56110.1| Transcription elongation factor-like protein [Paenibacillus polymyxa SC2] Length = 365 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/338 (42%), Positives = 223/338 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++ Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VEEV + +ISL AR+ +P + V + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVEEVLDPRTEISLPAAREINPHFQLEDVAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+YI Sbjct: 123 RGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLSELMPNEKFNHLDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S ++ Sbjct: 183 TKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRNA 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+ Sbjct: 243 EVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG +GQN RLA++LTGW IDI +E Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSE 340 >gi|256544696|ref|ZP_05472068.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC 51170] gi|256399585|gb|EEU13190.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC 51170] Length = 415 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 216/327 (66%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L VVEEV +I Sbjct: 16 KNVDKRIILEALEKALVKSYQKNYDNNENVDVSIDDETGEIEVYSLKNVVEEVNEPIAEI 75 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 S A++ DP +D+G + + P +FGRVA Q+A+ ++IQK+R+A+RD Y E+ D+ Sbjct: 76 SKTKAKEIDPKLDLGDICRVKIAPKNFGRVAAQTARNIVIQKIRDAQRDSVYSEYLDRAN 135 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 EII+G V+R + N+ ++L +G+I E + E P R+K I +V+ + PQ++ Sbjct: 136 EIITGVVQREDKFNIYINLDKIEGIIPLKEQVENETYTPNQRIKVLIKEVKNTTKEPQII 195 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D ID +GAC+G +G Sbjct: 196 LSRKDKALVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSNDPEIDSIGACIGFKG 255 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 SRV ++V EL+ EKIDI+ + D F+ N+L PA + +V +++ + V+V ++QLSL Sbjct: 256 SRVNSIVEELQGEKIDIINYDKDIKVFIKNSLSPAEINEVYINDKKKQSLVVVREDQLSL 315 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEE 346 AIG+ GQN RLA++LTGW IDI ++EE Sbjct: 316 AIGKEGQNARLAARLTGWKIDIKSQEE 342 >gi|224476389|ref|YP_002633995.1| transcription elongation factor NusA [Staphylococcus carnosus subsp. carnosus TM300] gi|222420996|emb|CAL27810.1| putative transcription elongation protein NusA [Staphylococcus carnosus subsp. carnosus TM300] Length = 437 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/337 (42%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYEAARNVRVELNMDEGTFHVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + ++ + A +++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVDDVFDDREEVDISTALEKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDIVTGIIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V +K+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVVIKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G RV+A+V EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGSKGVRVEAIVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDEANQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|73662811|ref|YP_301592.1| transcription elongation factor NusA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495326|dbj|BAE18647.1| transcription termination-antitermination factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 397 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + +RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARTVRVELNMDQGSFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE + +ISL A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEESMDDREEISLDTALVKNPAYEIGDIYEEDVTPSDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R++ Y+ Sbjct: 125 EILYDEFIDKEDDIVTGLIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNERIRVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVHSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLQVIVDEPNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|239636256|ref|ZP_04677258.1| transcription termination factor NusA [Staphylococcus warneri L37603] gi|239597611|gb|EEQ80106.1| transcription termination factor NusA [Staphylococcus warneri L37603] Length = 410 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 222/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K ++ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVFVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVYSDNPE 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|328957408|ref|YP_004374794.1| transcription elongation factor NusA [Carnobacterium sp. 17-4] gi|328673732|gb|AEB29778.1| transcription elongation factor NusA [Carnobacterium sp. 17-4] Length = 425 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 143/348 (41%), Positives = 225/348 (64%), Gaps = 1/348 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + E Sbjct: 4 EMLNALEALEQEKGISKEFVIEALEVALVSAYKRNYDQAQNVEVEFDLKKGNIHVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + ++ ++ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDVVYDSRLEVGIEEALEINKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y+ Sbjct: 124 NIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + Sbjct: 184 KVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSREEH 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E G Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNESNGS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKD 354 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + ++IN K+ Sbjct: 304 CLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMEAINLAKE 351 >gi|329121255|ref|ZP_08249882.1| transcription termination factor NusA [Dialister micraerophilus DSM 19965] gi|327470189|gb|EGF15652.1| transcription termination factor NusA [Dialister micraerophilus DSM 19965] Length = 373 Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 143/326 (43%), Positives = 213/326 (65%), Gaps = 4/326 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78 D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN + Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF + Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++ Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITE 344 LAIG+ GQN RLA++LT W IDI +E Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSE 344 >gi|313892549|ref|ZP_07826136.1| transcription termination factor NusA [Dialister microaerophilus UPII 345-E] gi|313118946|gb|EFR42151.1| transcription termination factor NusA [Dialister microaerophilus UPII 345-E] Length = 373 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 143/326 (43%), Positives = 213/326 (65%), Gaps = 4/326 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78 D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN + Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF + Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++ Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITE 344 LAIG+ GQN RLA++LT W IDI +E Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSE 344 >gi|310658997|ref|YP_003936718.1| transcription translation coupling factor [Clostridium sticklandii DSM 519] gi|308825775|emb|CBH21813.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Clostridium sticklandii] Length = 357 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 144/352 (40%), Positives = 231/352 (65%), Gaps = 14/352 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + + EK I ++++ + ++ A + +GT S++RVE++ + G++ +F Sbjct: 4 EFIAALEQIETEKGISKEILFEALESALLNAYKKNFGTSSNVRVEMDKDKGEVKVFSRKS 63 Query: 68 VVEEVENYTC---QISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + E Y +IS++ A++R P+ G V+ + + P +FGR+A Q+A+Q++IQK++ Sbjct: 64 VVNKYE-YDLGEGEISVEEAQERYGPNYGDGDVIEEEVTPKNFGRIAAQAARQMVIQKIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISRE 174 EAERD Y EF ++ EII+G V R GNV V+L +++ V+ E I E Sbjct: 123 EAERDIVYEEFLNRESEIITGEVSRQGKGNVYVNLSIIGSKDITISAEAVLPPSEQIPFE 182 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 N PG RVK Y+ +V++ PQ+L+SR+HP + +LF EVPEI++G+VQ+K++SR+ G Sbjct: 183 NYMPGARVKVYVLEVKKNNNVPQILVSRSHPGLVKRLFESEVPEIFDGVVQIKSISREAG 242 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR K+AV S D ++DP+GACVG +G RV+ +V EL+ EKIDI+++S D F+ +L P+ Sbjct: 243 SRTKMAVHSVDENVDPIGACVGPKGQRVKNIVDELKGEKIDIIIYSEDPKEFISASLSPS 302 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V V ++ED +V+VP ++LSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 303 KVISVDVNEDDKSAKVVVPDDKLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 354 >gi|153954053|ref|YP_001394818.1| transcription elongation factor NusA [Clostridium kluyveri DSM 555] gi|219854666|ref|YP_002471788.1| hypothetical protein CKR_1323 [Clostridium kluyveri NBRC 12016] gi|146346934|gb|EDK33470.1| NusA [Clostridium kluyveri DSM 555] gi|219568390|dbj|BAH06374.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 139/350 (39%), Positives = 230/350 (65%), Gaps = 4/350 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y + +++V +N E G+I ++ Sbjct: 4 EFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYIGHGISNQNVKVTMNRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V+ V + +ISL+ A++ D + D+G +V+ + P FGRVA Q+AKQV+IQ+++ Sbjct: 64 SQKSIVDNVVDDVSEISLEDAKEIDSNYDMGDIVNIEVTPRKFGRVAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y +F +K +II+GTV R + N++V+LG ++ ++ +E I E D++K Sbjct: 124 EEERRIIYNDFVEKEDDIITGTVIRKDKNNILVNLGKTEAILGPNEQIPGEKYNFNDKLK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +G Q+++SRTHP + +LF +EVPE+++G V +K+++R+ GSR K+AV S Sbjct: 184 LYIVEVKNTTKGAQIVISRTHPGLIKRLFELEVPEVFDGTVDIKSIAREAGSRTKIAVHS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++DP+GACVG +G RVQ +V EL+ EKIDI+ WS ++ NAL PA V V LDE Sbjct: 244 NDENVDPMGACVGPKGVRVQNIVNELKSEKIDIIKWSKLPEEYIANALSPAKVLDVTLDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +K Sbjct: 304 EIKFAQIVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQSDVEDEK 353 >gi|293366770|ref|ZP_06613446.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W2(grey)] gi|291319071|gb|EFE59441.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W2(grey)] gi|329736653|gb|EGG72919.1| transcription termination factor NusA [Staphylococcus epidermidis VCU045] Length = 407 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|329736283|gb|EGG72555.1| transcription termination factor NusA [Staphylococcus epidermidis VCU028] Length = 404 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|308068697|ref|YP_003870302.1| transcription elongation protein nusA [Paenibacillus polymyxa E681] gi|305857976|gb|ADM69764.1| Transcription elongation protein nusA [Paenibacillus polymyxa E681] Length = 365 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 141/338 (41%), Positives = 223/338 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++ Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VEEV + +ISL AR+ +P + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVEEVLDPRTEISLPAAREINPHFQLEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+YI Sbjct: 123 RGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLGELMPNEKFSHLDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S ++ Sbjct: 183 TKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRNA 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+ Sbjct: 243 EVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG +GQN RLA++LTGW IDI +E Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSE 340 >gi|242242549|ref|ZP_04796994.1| transcription elongation factor NusA [Staphylococcus epidermidis W23144] gi|242233976|gb|EES36288.1| transcription elongation factor NusA [Staphylococcus epidermidis W23144] Length = 407 Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|229824767|ref|ZP_04450836.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC 49176] gi|229791096|gb|EEP27210.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC 49176] Length = 360 Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/342 (42%), Positives = 218/342 (63%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL++ D + I ++++L + +S+ A + +G +I+V IN E G +S+ Sbjct: 15 NSKELIEALDQLEKTNDISKEIILEAVENSLLVACKDEFGKADNIKVTINRENGKVSVLS 74 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE VE+ QISL A++ P+ G VV+ + P +FGR+A Q AKQV++QK+RE Sbjct: 75 EKTVVETVEDPITQISLAEAKETFPNAVEGQVVNIVITPKNFGRIAAQKAKQVVVQKIRE 134 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER + ++ K +I++G V+R GN+ ++LG D ++ E + E DR+K Sbjct: 135 EERKVLFNQYFAKEHDIVTGIVQRYTGGNISINLGKVDALLSESERVKTEKFSSTDRIKL 194 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++ +SRTHP + +LF EV EI +G V++K++SR+ GSR K+AV+S+ Sbjct: 195 YVVEVKDTSKGPRITVSRTHPDLVKRLFESEVTEIKDGTVEIKSISREAGSRTKIAVYSN 254 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +D VGACVG+ SRV+AVV ELR EKIDIVVWS D F++NAL PA V D + Sbjct: 255 NPEVDAVGACVGLNRSRVEAVVDELRGEKIDIVVWSEDPRVFIMNALSPARAISVEADPE 314 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIV QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 315 EKTAKVIVADSQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 356 >gi|329724329|gb|EGG60841.1| transcription termination factor NusA [Staphylococcus epidermidis VCU144] Length = 407 Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|319401444|gb|EFV89654.1| transcription elongation protein nusA [Staphylococcus epidermidis FRI909] Length = 407 Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|27467860|ref|NP_764497.1| transcription elongation factor NusA [Staphylococcus epidermidis ATCC 12228] gi|251810697|ref|ZP_04825170.1| transcription elongation factor NusA [Staphylococcus epidermidis BCM-HMP0060] gi|282876302|ref|ZP_06285169.1| transcription termination factor NusA [Staphylococcus epidermidis SK135] gi|27315405|gb|AAO04539.1|AE016747_36 transcription termination-antitermination factor [Staphylococcus epidermidis ATCC 12228] gi|251805857|gb|EES58514.1| transcription elongation factor NusA [Staphylococcus epidermidis BCM-HMP0060] gi|281295327|gb|EFA87854.1| transcription termination factor NusA [Staphylococcus epidermidis SK135] Length = 407 Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 218/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|297180246|gb|ADI16466.1| transcription elongation factor [uncultured bacterium HF770_11D24] Length = 467 Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 151/387 (39%), Positives = 235/387 (60%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK +DR++++S + D++ AA+ G ++R EI+ + GDI F L VVE V + + Sbjct: 15 EKGLDREILISAVEDAMVSAAKRAVGPARELRCEIDRKDGDIRAFATLIVVETVTDKQNE 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISL A+ P + + + P +FGR+A Q+AKQ ++Q +R AE+ Y EFKD+V Sbjct: 75 ISLDSAQRIKPDAQLEEELEVEVTPKNFGRIASQNAKQALMQAIRRAEKALIYTEFKDRV 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+I+SG V+ + +V+VDLG + ++ E + E + G+R++ + V ++ Sbjct: 135 GDIVSGEVRGFDRSDVLVDLGKFEALLPNRERVPTEEYQRGERIRCLVKAVEGSDSSSEI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +LSR F++KLF +EV EI +G +++KA++R+PG R KLAV S D +DPVGACVG+R Sbjct: 195 ILSRRDSDFVIKLFQLEVSEINDGTIEIKAIAREPGFRTKLAVHSRDEKVDPVGACVGLR 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL +EKIDI+ W D T+V N+L PA + ++ + +D R+ V+V +QLS Sbjct: 255 GQRVKNIVRELNNEKIDIIRWDSDVETYVTNSLAPAQLKRLEIQQDRKRVHVLVDPDQLS 314 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVA 378 LAIGRRGQN RL S LTGW IDI E+E + ++ + +++ A LV Sbjct: 315 LAIGRRGQNARLTSLLTGWQIDIDPEQEVRVGFEEQVADAVDALAAIPGIEKEQADALVH 374 Query: 379 EGFADVEELACVKISEIASIEGFDEET 405 G ++ L V+ S++A I G E Sbjct: 375 AGLLTLDALNGVEASDLADIPGLAEHA 401 >gi|126640415|ref|YP_001083399.1| transcription elongation factor NusA [Acinetobacter baumannii ATCC 17978] Length = 418 Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 173/412 (41%), Positives = 252/412 (61%), Gaps = 12/412 (2%) Query: 76 TCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 CQ ++ D DP+ IG V + ++FGR+A Q AKQVI+QK+REAER + Sbjct: 3 ACQDAIS---DVDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQKIREAERALVADAY 59 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + KVGE+I G VK+ I+DLG N++ + R+E I +E LRP RV + +Y V RE Sbjct: 60 ESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPKQRVNAILYSVNREG 119 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+AV ++D IDPVGA Sbjct: 120 RGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKIAVKTNDHRIDPVGA 179 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI-V 312 C+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +VLDED ++I Sbjct: 180 CIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGIVLDEDAKSADIIFA 239 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + F+ ++++E + Sbjct: 240 TNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQYLDMFVSRLDIEEDL 299 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432 A LV GF +EE+A V IE D E +Q RA+E + Q+ I+E Sbjct: 300 AMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAALTDALKQQENIQE-- 356 Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNI 481 S +L ++ G+ S+I +L GI T++DLA + DD+ G K G + Sbjct: 357 PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIEGLGHEKAGQL 408 >gi|330685665|gb|EGG97306.1| transcription termination factor NusA [Staphylococcus epidermidis VCU121] Length = 410 Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 143/337 (42%), Positives = 222/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEKVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K ++ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVFVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVYSENPE 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 341 >gi|164688521|ref|ZP_02212549.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM 16795] gi|164602934|gb|EDQ96399.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM 16795] Length = 384 Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 2/336 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ D + ++ ID+++++ + ++ A + +G+ ++RV ++ E G++ ++ Sbjct: 4 EFMEALDELEKDRGIDKEIIIDTIEQALLTAYKKNFGSAQNVRVSVDREGGEVRVYSQRR 63 Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E + Y +I L A DPS ++G ++ + + P +FGR+A Q+AKQV++Q++REA Sbjct: 64 VVDESDLYDTFLEIELADAIKIDPSYELGDIIENEVTPKEFGRIAAQTAKQVVVQRIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +K EI++G + R V V++G + + +E I E + G ++K Y Sbjct: 124 EREIVYNEFIEKESEIVTGEIARATSKTVYVNVGKIEASMPENEQIPGEVYKAGQKIKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SR+HP + +LF M+V EI+ GIVQ+K+VSR+ GSR K+AV S D Sbjct: 184 ILEVKKTNKGPQIVVSRSHPGLVKRLFEMQVVEIFEGIVQIKSVSREAGSRTKIAVQSID 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+GACVG +GSRV+AVV EL EKIDI+ +S D A F+ AL P+ V KV ++E+ Sbjct: 244 EKIDPIGACVGPKGSRVKAVVDELGGEKIDIINYSEDPAEFISAALSPSKVEKVEINEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LT W IDI Sbjct: 304 KTALVVVPDYQLSLAIGKSGQNARLAAKLTNWKIDI 339 >gi|28210959|ref|NP_781903.1| transcription elongation factor NusA [Clostridium tetani E88] gi|28203398|gb|AAO35840.1| N utilization substance protein A [Clostridium tetani E88] Length = 361 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 145/330 (43%), Positives = 218/330 (66%), Gaps = 4/330 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I +++ + + D++ A + Y T + V +N ETG+I ++ VVEE Sbjct: 12 IVKEKGISAELLFNTIEDALVAAYKKNYSKQGATSQHVNVSMNRETGEIHVYSRKNVVEE 71 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 VE+ +I ++ A+ DP ++ +V + P FGRVA Q+AKQV++Q+++E ER Y Sbjct: 72 VEDEFNEIFVEDAKTIDPRYELEDIVDIEVTPEKFGRVAAQAAKQVVVQRIKEEERRIVY 131 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EF +K +II+G V R + NV ++LG + V+ +E + E D++K YI +V+ Sbjct: 132 NEFIEKECDIITGNVIRKDKTNVFINLGKIEAVLGPNEQMPGEEYNFNDKLKLYIVEVKN 191 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +G QV++SRTHP + +LF +EVPEIYNGIV++K++SR+ GSR K+AV S+D ++D + Sbjct: 192 TTKGAQVVVSRTHPGLVKRLFELEVPEIYNGIVEIKSISREAGSRTKIAVHSNDENVDSM 251 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G+RVQ +V EL++EKIDI+ WS F+ NAL PA V KV +DE+ +V+ Sbjct: 252 GACVGPKGTRVQNIVNELKNEKIDIIKWSKLPDEFISNALSPARVLKVDVDEESKSAKVL 311 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 VEDNQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|332638631|ref|ZP_08417494.1| transcription elongation factor NusA [Weissella cibaria KACC 11862] Length = 379 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/341 (42%), Positives = 227/341 (66%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ EK I +V++ + ++++KA Y ++ V+ + + G+I ++ + Sbjct: 4 ELVNALDALEQEKGIKAEVLVEAIEEALKKAYEKNYDESENVEVQFDQKKGNIKVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE++ QI+L+ A + + + +IG + + P DFGR+A Q+AKQ+I+QKVREAER Sbjct: 64 VVEEIDEPYEQITLEEALELNKAYEIGDEIRFEVTPADFGRLAAQTAKQIIMQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186 Y +F E+I+G V+R + + + L GN + +++ + + E+ R GD++K + Sbjct: 124 GVVYDKFIGYENEVITGEVERQDSRFLYIILPGNQEAAMKQGDQMPNESYRMGDKIKVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V+ EQ+GPQV +SRTHP+ + +LF EVPE+++G V++K+++R+ G R+K+AV+S +S Sbjct: 184 SQVQNEQKGPQVFVSRTHPELVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSHNS 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++D VG VG RG+RVQAVVTEL E +DIV W+ D A F+ NAL PA V V+ D Sbjct: 244 NLDAVGTMVGQRGARVQAVVTELSGENMDIVEWTEDPAQFIKNALNPAEVVDVIFDPTND 303 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R + V+VP QLSLAIG+RGQN RLA++LTG+ IDI E E Sbjct: 304 RAVTVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESE 344 >gi|254519187|ref|ZP_05131243.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA] gi|226912936|gb|EEH98137.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA] Length = 360 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/338 (43%), Positives = 225/338 (66%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLF 63 E + + +K I D++ S + D++ A + Y + + +++V IN ETG+I ++ Sbjct: 4 EFIGALKEIVKDKGISEDLIFSTIEDALVAAYKKNYASPTTSAQNVKVSINRETGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+V + +ISL+ A++ P D+ +V + P +FGRVA Q AK V+ Q++R Sbjct: 64 AQKVVVEDVYDDVTEISLEEAKEVSPRYDLDDIVDLEVTPKNFGRVAAQLAKGVVTQRIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y E+K+ +II+GTV R + GNV V+LG + I +E I RE + ++VK Sbjct: 124 EAERNIVYSEYKELEYDIITGTVLRKDKGNVFVNLGRIETSIGPNEQIPREEYKFNEKVK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +G Q+L+SRTHP + +LF +EVPEIY G+V++K++SR+ GSR+K+AV+S Sbjct: 184 LYVVEVKNGSKGAQILVSRTHPGLVKRLFELEVPEIYEGVVEIKSISREAGSRSKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++DP+GACVG +G+RVQ +V EL+ EKIDI+ WS + F+ +L PA V +VV E Sbjct: 244 NDENVDPMGACVGPKGTRVQNIVNELKGEKIDIIKWSKNPEEFIAASLSPAKVLEVVACE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +V+V QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 304 ETKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDI 341 >gi|291519298|emb|CBK74519.1| transcription termination factor NusA [Butyrivibrio fibrisolvens 16/4] Length = 393 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/343 (42%), Positives = 217/343 (63%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++AN + + +A EK+I DV++ + +S+ A ++ YG + +VEI+ TG+ Sbjct: 1 MAANTNDFWEALTDLAKEKNISMDVLIETIENSLLIACKNNYGKADNAKVEIDKNTGEYH 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL A+D +G +V + DFGR+A +AK I QK Sbjct: 61 VYLSKTVVDEVMDPVEEISLSDAQDISGKHQVGDIVQIEVKSKDFGRIAATAAKNTITQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +RE ER Y E+ + ++++G V R N+ V+LG +G + E + E +P DR Sbjct: 121 IREEERKVLYEEYYELQHKVVTGVVTRFSGNNIHVNLGKLEGFLSETEQVKGEYYKPQDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GP++L+SRTHP+ + KLF EV E+ +GIV++K++SR+ GSR K+AV Sbjct: 181 IKVYIVEVKTSNKGPRILVSRTHPELVKKLFEEEVSEVRDGIVEIKSISREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DPVGACVG G+RV A+V ELR EKIDIV W + A + NAL PA V V+ Sbjct: 241 WSNDEDVDPVGACVGQNGARVNAIVNELRGEKIDIVEWDENPAYLIENALSPAKVVAVIA 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 D D V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 301 DADEKTARVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 343 >gi|222526490|ref|YP_002570961.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl] gi|222450369|gb|ACM54635.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl] Length = 442 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/331 (43%), Positives = 220/331 (66%), Gaps = 5/331 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G ++ +VV+EV Sbjct: 12 IASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARVYAEKQVVDEV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I L+ AR P IG V P DFGR+A Q+AKQV++Q +++ ER+ Y Sbjct: 72 YDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGIKDIERNYIYS 131 Query: 133 EFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G R+K Y+ +V+ Sbjct: 132 EFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQRLKVYLMEVK 191 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 +++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+AV + IDP Sbjct: 192 KDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVAVAARQEGIDP 251 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V L++ V Sbjct: 252 VGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVHLNDHEHTALV 311 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 IVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 IVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 342 >gi|57866748|ref|YP_188415.1| transcription elongation factor NusA [Staphylococcus epidermidis RP62A] gi|57637406|gb|AAW54194.1| N utilization substance protein A, putative [Staphylococcus epidermidis RP62A] Length = 407 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/337 (42%), Positives = 217/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+ G + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT W IDI +E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSE 341 >gi|313608989|gb|EFR84731.1| transcription termination factor NusA [Listeria monocytogenes FSL F2-208] Length = 330 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 215/327 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334 VIVP QLSLAIG+RGQN RLA++L Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKL 330 >gi|163848555|ref|YP_001636599.1| transcription termination factor NusA [Chloroflexus aurantiacus J-10-fl] gi|163669844|gb|ABY36210.1| transcription termination factor NusA [Chloroflexus aurantiacus J-10-fl] Length = 442 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/331 (43%), Positives = 219/331 (66%), Gaps = 5/331 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G ++ +VV+EV Sbjct: 12 IASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARVYAEKQVVDEV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I L+ AR P IG V P DFGR+A Q+AKQV++Q +++ ER+ Y Sbjct: 72 YDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGIKDIERNYIYS 131 Query: 133 EFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G R+K Y+ +V+ Sbjct: 132 EFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQRLKVYLMEVK 191 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 +++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+AV + IDP Sbjct: 192 KDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVAVAARQEGIDP 251 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V L++ V Sbjct: 252 VGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVHLNDHEHTALV 311 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 IVP +QLSLAIG+ GQNVRLA +LTGW IDI Sbjct: 312 IVPDKQLSLAIGKEGQNVRLAEKLTGWRIDI 342 >gi|291562551|emb|CBL41367.1| transcription termination factor NusA [butyrate-producing bacterium SS3/4] Length = 388 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 219/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + + E +I +D +L + +S+ A ++ +G +++V I+P+ D S++ E Sbjct: 4 ELMESMNILEKEYNISKDTLLEAIENSLLTACKNHFGKADNVKVIIDPDGCDYSVYMEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ QISL AR P +G +V P+ DFGR+A Q+AK VI+QK+RE R Sbjct: 64 VVETVEDPITQISLADARMIAPRHVLGDIVQIPIDSHDFGRIATQNAKNVILQKIREESR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Q E++ K E+++G V+R NV VDLG D ++ E + E + +R+K YI Sbjct: 124 KSQLSEWQCKEKEVVTGIVQRYIGRNVSVDLGKIDAILPEAEQVKGEVFQRTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++ +SRTHP + +LF E+ E+ +G V+++A++R+ GSR K+AV S+D + Sbjct: 184 EVKDSPKGPRISVSRTHPDLVRRLFEAEIAEVRDGTVEIRAIAREAGSRTKIAVSSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV A+V ELR EKIDI+ W + A + NAL PA V VV DED Sbjct: 244 VDPVGACVGLNGARVNAIVNELRGEKIDIINWDDNPAFLIENALSPAKVISVVADEDEKE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LT + IDI +E Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTTYKIDIKSE 340 >gi|325661695|ref|ZP_08150318.1| transcription termination factor NusA [Lachnospiraceae bacterium 4_1_37FAA] gi|331084712|ref|ZP_08333800.1| transcription termination factor NusA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471948|gb|EGC75163.1| transcription termination factor NusA [Lachnospiraceae bacterium 4_1_37FAA] gi|330410806|gb|EGG90228.1| transcription termination factor NusA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 377 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 225/337 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + EK I ++ +L + +S+ A ++ +G +I++ +N ET D S+F Sbjct: 4 ELLEALTILEEEKDISKETMLDAIENSLMNACKNHFGKADNIKIIMNRETCDYSVFAEKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE ER Sbjct: 64 VVEEVEDEVMEISLADAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y+ Sbjct: 124 KVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K++SR+ GSR K+AV+S+D Sbjct: 184 EVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSISREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 ASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|329769654|ref|ZP_08261058.1| transcription termination factor NusA [Gemella sanguinis M325] gi|328838409|gb|EGF88018.1| transcription termination factor NusA [Gemella sanguinis M325] Length = 343 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/340 (42%), Positives = 215/340 (63%), Gaps = 2/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + +L+ A +P+ ++G + + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEEEDLPSDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K YI Sbjct: 124 EILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGEEYVPQTPIKVYIA 183 Query: 188 DVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V RG P VL SR+HP+F+ +LF +EVPEIYNG+V++K+VSR+ G R K+AV+S D Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYNGVVEIKSVSREAGDRTKIAVYSED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RV +V+EL EKIDI+ W D F+ NAL PA V ++ +DE+ Sbjct: 244 KNIDPVGACVGNKGERVNRIVSELNGEKIDIITWDADPVKFITNALAPAKVEEISIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V +QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDIKAAE 343 >gi|254375031|ref|ZP_04990511.1| transcription elongation factor [Francisella novicida GA99-3548] gi|151572749|gb|EDN38403.1| transcription elongation factor [Francisella novicida GA99-3548] Length = 489 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 289/473 (61%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKLSTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 417 ---VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELL 466 >gi|154485019|ref|ZP_02027467.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC 27560] gi|149733972|gb|EDM50091.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC 27560] Length = 408 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/339 (42%), Positives = 222/339 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + + EK I ++ + + +++ A ++ + ++ V ++ ETGD ++ E Sbjct: 4 ELIEALNILEKEKDISKESLFEAIENNLVVAYKNNFNKADNVTVTMDRETGDFHIYSQKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ AR + ++G +V+ + DFGR+A QSAK I+QK+RE ER Sbjct: 64 VVEEVMDPVTEISLEDARSIKGTYELGDIVNIEIQSKDFGRIATQSAKNGILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ +K +I++G V+R+ N+ V+LG D V+ E E+ RP +R+K YI Sbjct: 124 KSLYEQYFEKQDDIVTGIVQRINGKNISVNLGKVDTVLMEKEQAKGEHFRPTERIKLYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ RGP++++SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S++ Sbjct: 184 EVKDNGRGPRIVVSRTHPGLVKRLFEQEVTEIQDGTVEIKSIAREAGSRTKMAVWSNNED 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG+ G+RV AVV ELRDEKIDIV WS + A + NAL P+ V V+ D D Sbjct: 244 VDAVGACVGVNGARVNAVVDELRDEKIDIVNWSENPAILIENALSPSKVVAVLADPDNKE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 ALVVVPDFQLSLAIGKEGQNARLAAKLTGFKIDIKSESQ 342 >gi|187778986|ref|ZP_02995459.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC 15579] gi|187772611|gb|EDU36413.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC 15579] Length = 454 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/339 (42%), Positives = 233/339 (68%), Gaps = 5/339 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E+G+I ++ Sbjct: 4 EFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRESGEIKVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKVVELVEEEIEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R +++K Sbjct: 124 EEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEKIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNG+V++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGVVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 +D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V ++D Sbjct: 244 NDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELISNALSPAKVIDVTIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E+ V+V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 EENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 342 >gi|291546819|emb|CBL19927.1| transcription termination factor NusA [Ruminococcus sp. SR1/5] Length = 397 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/331 (43%), Positives = 217/331 (65%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 D + EK+I +D +L + S+ +A ++ +G ++ V I+PET D S++ VVE VE Sbjct: 10 DVLEKEKNISKDTLLEAIEQSLIQACKNHFGKADNVHVMIDPETCDFSVYADRTVVEHVE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL A+ + + +IG V+ + +FGR+A Q+AK VI+QK+RE ER Y + Sbjct: 70 DPALEISLVDAQKTNTNAEIGDVMKVEIQSKEFGRIATQNAKNVILQKIREEERKVLYDQ 129 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + E+++G V+RV NV ++LG +D V+ +E + E +P +RVK YI +V+ Sbjct: 130 YYGIEKEVVTGIVQRVMGKNVSINLGKADAVLTENEQVKGETFQPTERVKVYILEVKDTP 189 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D +D VGA Sbjct: 190 KGPRILVSRTHPGLVKRLFESEVAEVRDGTVEIKSIAREAGSRTKIAVWSNDPDVDAVGA 249 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVGM G+RV AVV EL EKIDI+ W + A + NAL PA V V+ D D V+VP Sbjct: 250 CVGMNGARVGAVVNELHGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKTALVVVP 309 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 310 DYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|229918666|ref|YP_002887312.1| NusA antitermination factor [Exiguobacterium sp. AT1b] gi|229470095|gb|ACQ71867.1| NusA antitermination factor [Exiguobacterium sp. AT1b] Length = 387 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 153/341 (44%), Positives = 218/341 (63%), Gaps = 6/341 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAAR-SLYGTMSDIRVEINPETGDISLFRLL 66 +LL D +A EK ID+++++ + ++ A R ++ ++VE + TGDI ++ LL Sbjct: 4 QLLTTIDQIAKEKGIDKNIIIDALEQALISAYRRNVANPNEHVKVEFDQVTGDIRVYALL 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE + Q+SL+ A + DP+ ++G + + P DFGRVA +AKQV+ QK+REAE Sbjct: 64 EVVERLTQPDQQLSLEEAHEIDPNYELGDFHKEEVTPSDFGRVAAMTAKQVVTQKMREAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSY 185 R+R Y F DK EI++G V+R + N+ + L N+ + V+ +E + E+ + DR+K Y Sbjct: 124 RERIYNHFADKEDEIMTGIVERFDPRNLYIGLENNIEAVLTPNEQMPNESYQIHDRIKVY 183 Query: 186 IYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V +G + +SRTHP + +LF +EVPEI NG V V +VSR+ G R+K+AV S Sbjct: 184 VTKVDSTTKGSGAAIQVSRTHPGLLRRLFELEVPEISNGTVDVMSVSREAGDRSKIAVHS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +DPVGACVG +G RVQ +V EL EKIDIV WS D FV NAL PA V V ++E Sbjct: 244 D--IVDPVGACVGPKGQRVQTIVDELNGEKIDIVRWSEDPKEFVRNALSPAQVVAVYVNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 302 PAKSTTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 342 >gi|332184778|gb|AEE27032.1| Transcription termination protein NusA [Francisella cf. novicida 3523] Length = 489 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 288/473 (60%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSENEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y +IVDLGN ++G++ + + I+RE R GD+++ Sbjct: 124 FEREKTARFYQNKIGDIVYGEIKRATYEILIVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V + G V+LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVESVECDDSGKPNTVMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASTLIGWKINVLSDAEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 417 ---VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELL 466 >gi|118498223|ref|YP_899273.1| transcription elongation factor NusA [Francisella tularensis subsp. novicida U112] gi|194324407|ref|ZP_03058180.1| transcription termination factor NusA [Francisella tularensis subsp. novicida FTE] gi|208780250|ref|ZP_03247592.1| transcription termination factor NusA [Francisella novicida FTG] gi|118424129|gb|ABK90519.1| transcription elongation factor [Francisella novicida U112] gi|194321472|gb|EDX18957.1| transcription termination factor NusA [Francisella tularensis subsp. novicida FTE] gi|208743899|gb|EDZ90201.1| transcription termination factor NusA [Francisella novicida FTG] gi|332678959|gb|AEE88088.1| Transcription termination protein NusA [Francisella cf. novicida Fx1] Length = 489 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 289/473 (61%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 417 ---VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELL 466 >gi|251797400|ref|YP_003012131.1| NusA antitermination factor [Paenibacillus sp. JDR-2] gi|247545026|gb|ACT02045.1| NusA antitermination factor [Paenibacillus sp. JDR-2] Length = 365 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 220/340 (64%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + +K I ++V+L + ++ + + + ++RV+IN +G I ++ Sbjct: 3 MDFIEALSEIERDKGIAKEVLLEAIEAALISSYKRNFNAAQNVRVDINRHSGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +I++ +R+ +P + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 TVVDEVLDPRLEITVDASREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKSYI Sbjct: 123 RGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV+S + Sbjct: 183 TKVENTTKGPQIILSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVYSRNE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V EL EKIDIV WS +V NAL P+ V +V++ E Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELTGEKIDIVRWSESVEEYVANALSPSKVLEVIVFEQEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQ 342 >gi|212696551|ref|ZP_03304679.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM 7454] gi|212676487|gb|EEB36094.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM 7454] Length = 410 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 216/327 (66%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L VV+EV + +I Sbjct: 16 KNVDKKIILEALEKALVKSYQKNYENNENVDVNIDDETGEIEVYSLKNVVDEVNDPIAEI 75 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 S AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A+RD Y E+ D+ Sbjct: 76 SKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDAQRDSVYSEYLDRAN 135 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 EII+G V+R + NV ++L +G+I E + E R+K I DV+ + PQ++ Sbjct: 136 EIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVLIKDVKNTTKEPQII 195 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D ID +GAC+G +G Sbjct: 196 LSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSNDPEIDSIGACIGFKG 255 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 SRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++ + V+V ++QLSL Sbjct: 256 SRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMKKQSLVVVREDQLSL 315 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEE 346 AIG+ GQN RLA++LTGW IDI ++EE Sbjct: 316 AIGKEGQNARLAARLTGWKIDIKSQEE 342 >gi|325847934|ref|ZP_08170105.1| transcription termination factor NusA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480803|gb|EGC83857.1| transcription termination factor NusA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 410 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 216/327 (66%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L VV+EV + +I Sbjct: 16 KNVDKKIILEALEKALVKSYQKNYENNENVDVNIDEETGEIEVYSLKNVVDEVNDPIAEI 75 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 S AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A+RD Y E+ D+ Sbjct: 76 SKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDAQRDSVYSEYLDRAN 135 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 EII+G V+R + NV ++L +G+I E + E R+K I DV+ + PQ++ Sbjct: 136 EIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVLIKDVKNTTKEPQII 195 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D ID +GAC+G +G Sbjct: 196 LSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSNDPEIDSIGACIGFKG 255 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 SRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++ + V+V ++QLSL Sbjct: 256 SRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMKKQSLVVVREDQLSL 315 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEE 346 AIG+ GQN RLA++LTGW IDI ++EE Sbjct: 316 AIGKEGQNARLAARLTGWKIDIKSQEE 342 >gi|312972559|ref|ZP_07786732.1| transcription elongation protein nusA [Escherichia coli 1827-70] gi|310332501|gb|EFP99714.1| transcription elongation protein nusA [Escherichia coli 1827-70] Length = 335 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 140/321 (43%), Positives = 212/321 (66%), Gaps = 3/321 (0%) Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 +I R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI + Sbjct: 1 MILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEV 60 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 +++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + Sbjct: 61 IEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 120 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T Sbjct: 121 AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 180 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 ++ Q + + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE Sbjct: 181 VDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE 240 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 T ++ RA+ L I ++ + + +++L ++ G+D + L G+ T+EDLA Sbjct: 241 PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLA 300 Query: 464 GCSVDDLL---GWSENKGGNI 481 +DDL G ++ K G + Sbjct: 301 EQGIDDLADIEGLTDEKAGAL 321 >gi|266625027|ref|ZP_06117962.1| transcription termination factor NusA [Clostridium hathewayi DSM 13479] gi|288863082|gb|EFC95380.1| transcription termination factor NusA [Clostridium hathewayi DSM 13479] Length = 401 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 221/337 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + E +I +D +L + +S+ A ++ +G +++V +N ET D S++ E Sbjct: 4 ELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL A+ DP DIG +V P+ FGR+A Q+AK VI+QK+RE R Sbjct: 64 VVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIREEGR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ + E+++G V+R NV ++LG D ++ E + E + +R+K Y+ Sbjct: 124 KALYNDWYCQEKEVVTGIVQRYLGKNVSINLGKVDAILNETEMVKGEVFKATERIKVYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D + Sbjct: 184 EVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 244 VDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEESRE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 340 >gi|227486447|ref|ZP_03916763.1| transcription termination factor NusA [Anaerococcus lactolyticus ATCC 51172] gi|227235628|gb|EEI85643.1| transcription termination factor NusA [Anaerococcus lactolyticus ATCC 51172] Length = 407 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 136/341 (39%), Positives = 235/341 (68%), Gaps = 1/341 (0%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 D + +K+++++V+L + ++ K+ + Y ++ V I+ ETG+I ++ L EVV++VE Sbjct: 10 DELCKDKNVEKEVILDALEKALVKSYQKNYDNQENVDVTIDHETGEIGVYALKEVVDKVE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + QI+LK A+D D S+ +G L P +FGRVA Q+A+ ++IQK+R+A+R+ + + Sbjct: 70 DPINQINLKDAKDLDASLAVGDTARIKLVPKNFGRVAAQTARNIVIQKIRDAQRESLFGD 129 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + D+ E+I+G ++RV+ NV V+L +G++ E + E+ P +R+K I +VR Sbjct: 130 YLDRENELITGLIQRVDKYNVYVNLDRIEGIVPLKEQVPTESYIPNERMKFLIKEVRNSG 189 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 + PQ++LSR+ + +LF +EVPEI +G++++ +++R+ GSR K+AVFS+D +ID VGA Sbjct: 190 KDPQIVLSRSSENLVTRLFELEVPEITDGVIEIYSIAREAGSRTKMAVFSNDETIDAVGA 249 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 C+G +G+RV ++V L+ EKIDI+ +S D +F+ NAL PA + +V ++E + V+V Sbjct: 250 CIGYKGARVNSIVDSLQGEKIDIINYSKDIESFISNALSPADIIEVYVNERNKQSLVVVE 309 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQK 353 +QLSLAIG+ GQN RLA++LTGW IDI ++ E DS+++++ Sbjct: 310 DDQLSLAIGKEGQNARLAARLTGWKIDIKSKLEFDSLSQEE 350 >gi|210622610|ref|ZP_03293270.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275] gi|210154111|gb|EEA85117.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275] Length = 390 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 151/359 (42%), Positives = 230/359 (64%), Gaps = 5/359 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E L + + K ID++V++ + ++ A + +G ++ VE + + GDI ++ Sbjct: 4 EFLNALNEIVETKGIDKEVLIDTIEQALLTAYKKNFGQARNVEVEFDRDNGDIKVYSTRT 63 Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E + Y +I L AR PS +IG V+ + + P +FGR+A Q+AKQV++Q++REA Sbjct: 64 VVDESDYYDSFLEIELSEARKISPSYEIGDVIRNEVTPSNFGRIAAQTAKQVVVQRLREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF ++ EI+ G + R V VDLG +GV+ R E I E + G R+K Y Sbjct: 124 EREIVYNEFMERESEIVDGEITRATPSVVYVDLGKIEGVMPRSEKIDNETYKEGQRIKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQ+++SR++ + +LF +EVPEI GIVQ+K+++R+ GSR K+AV S D Sbjct: 184 VVEVKKGSKGPQIIVSRSNKGLVGRLFELEVPEIEQGIVQIKSIAREAGSRTKMAVKSLD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+GACVG +GSRV+ +V EL DEKIDI+ +S D A ++ +L P+ V KV ++E+ Sbjct: 244 DKIDPIGACVGPKGSRVKNIVDELGDEKIDIIKYSDDFAEYISASLSPSKVVKVEVNEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE---EEDSINRQKDFNERTQF 361 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E EED N D E ++ Sbjct: 304 KSALVVVPDYQLSLAIGKDGQNARLAAKLTGWKIDIKSESQYEEDLANGVYDKKEESEL 362 >gi|182417570|ref|ZP_02948895.1| transcription termination factor NusA [Clostridium butyricum 5521] gi|237667179|ref|ZP_04527163.1| transcription termination factor NusA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378583|gb|EDT76111.1| transcription termination factor NusA [Clostridium butyricum 5521] gi|237655527|gb|EEP53083.1| transcription termination factor NusA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 384 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/327 (43%), Positives = 223/327 (68%), Gaps = 4/327 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRLLEVVEEVEN 74 EK I D++ + + D++ A + Y ++ +++V I+ ETG+I ++ VV+EV + Sbjct: 15 EKGICEDLIFTTIQDALVAAYKKNYANVNTNAQNVKVNIDRETGEIRVYAQKVVVDEVYD 74 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +IS++ A+ P ++ +V + P +FGRVA Q AKQV+ Q+++EAER+ Y E+ Sbjct: 75 DVTEISIEEAKVVSPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQRIKEAERNIIYDEY 134 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K++ +II+GT+ R + G V V+LG +GVI +E I E + +++K YI +V+ + Sbjct: 135 KEQEFDIITGTILRKDKGMVFVNLGKLEGVIGPNEQIPGEEYKFNEKLKLYIVEVKNGSK 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GPQ+ +SRTHP + +LF +EVPEI+ G+V+VK++SR+ GSR+K+AV+S+D +D +GAC Sbjct: 195 GPQIHVSRTHPGLVKRLFELEVPEIFEGVVEVKSISREAGSRSKIAVYSNDEEVDAMGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG +G RVQ +V EL++EKIDI+ WS D A F+ N+L PA V V +DE+ +V+V Sbjct: 255 VGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFIANSLSPAKVLSVEVDEENKTAKVVVDD 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 315 NQLSLAIGKEGQNVRLAAKLTNWKIDI 341 >gi|259046783|ref|ZP_05737184.1| N utilization substance protein A [Granulicatella adiacens ATCC 49175] gi|259036551|gb|EEW37806.1| N utilization substance protein A [Granulicatella adiacens ATCC 49175] Length = 366 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 139/337 (41%), Positives = 216/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I +DVV++ + ++ A + YG ++ VE + + G++ ++ + E Sbjct: 4 EMLRALTVLEEEKGISKDVVITALEAALVSAYKKNYGQAQNVEVEFDQKKGNMHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T ++SL+ A ++ + ++G + + P DFGR+A Q+AKQVI+Q++R+AER Sbjct: 64 VVEYVFDSTLEVSLEEAHEKHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF EI++G V R ++ V V+LG + + + I E P R+K + Sbjct: 124 TNIYNEFIQYENEIMTGVVDRQDFRYVYVNLGRIVAGMAKQDQIPTEEYLPDQRIKVLVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SRTHP + +LF EVPEIY+G+V++ +++R+ G RAK+AV ++D++ Sbjct: 184 KVDNTTKGPQIFVSRTHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRTNDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG RG RV +V EL E +DIV W+ D A ++ NAL PA V KV + D Sbjct: 244 LDPVGTCVGPRGQRVHNIVEELNGENMDIVEWNEDPAIYIKNALNPAQVLKVEFNSDNNG 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 CIVVVPDHQLSLAIGKRGQNARLAAKLTGYRIDIKSE 340 >gi|229824126|ref|ZP_04450195.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271] gi|229786480|gb|EEP22594.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271] Length = 397 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 212/337 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + EK I R V+ + ++ A + Y ++ V+ + G I ++ + E Sbjct: 4 ELVKAMQVLEEEKGISRQVIKEALESALALAYKKNYDQAQNVEVQFDENKGTIKVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE + T +ISL+ A + + +IG + + P DFGR+A Q+AK VI+Q++REAER Sbjct: 64 VVETNYDSTLEISLEEALKINRAYEIGDKIKFEVTPKDFGRIATQTAKHVIMQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF V EI++GTV+R ++ + V++G + ++ E I E P R+K Y+ Sbjct: 124 ENIFEEFSQYVDEIMTGTVERQDHRFIYVNIGRVEAIMPLGEQIPSEQFEPDQRIKVYVA 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+++SR H F+ +LF EVPEIY+G V+V A++R+ G RAK+AV S D + Sbjct: 184 KVDKTSKGPQIVVSRAHNDFLRRLFEQEVPEIYDGTVEVMAIAREAGDRAKVAVRSRDKN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG RG RVQA+V EL E +DI+ W+ D F+ NAL PA V KV +E+ Sbjct: 244 IDPVGTCVGPRGQRVQAIVNELNGENMDIIEWNEDPVVFIQNALSPAQVIKVDFNEEAHA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LT + IDI +E Sbjct: 304 CIVVVPDNQLSLAIGKRGQNARLAARLTTYKIDIKSE 340 >gi|56707228|ref|YP_169124.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis SCHU S4] gi|110669698|ref|YP_666255.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis FSC198] gi|134301263|ref|YP_001121231.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis WY96-3418] gi|224456289|ref|ZP_03664762.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis MA00-2987] gi|254369913|ref|ZP_04985921.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874067|ref|ZP_05246777.1| transcription factor nusA [Francisella tularensis subsp. tularensis MA00-2987] gi|56603720|emb|CAG44682.1| N utilization substance protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320031|emb|CAL08065.1| N utilization substance protein A [Francisella tularensis subsp. tularensis FSC198] gi|134049040|gb|ABO46111.1| transcription factor NusA [Francisella tularensis subsp. tularensis WY96-3418] gi|151568159|gb|EDN33813.1| hypothetical protein FTBG_01505 [Francisella tularensis subsp. tularensis FSC033] gi|254840066|gb|EET18502.1| transcription factor nusA [Francisella tularensis subsp. tularensis MA00-2987] gi|282158336|gb|ADA77727.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis NE061598] Length = 489 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 288/473 (60%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ I+++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSIDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 417 ---VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELL 466 >gi|323340011|ref|ZP_08080277.1| transcription termination factor NusA [Lactobacillus ruminis ATCC 25644] gi|323092517|gb|EFZ35123.1| transcription termination factor NusA [Lactobacillus ruminis ATCC 25644] Length = 401 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/356 (41%), Positives = 218/356 (61%), Gaps = 19/356 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL DA+ EK I ++V++ + ++ A + YG +++V + GDI +F + E Sbjct: 4 ELLNALDALETEKGIKKEVIIDALEQALVSAYKKNYGQAQNVKVTFDARRGDIKVFAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + ++SL A + + + +IG + + P DFGR+A Q+AKQVI+Q+VRE ER Sbjct: 64 VVNEVLDSCLEVSLSDALEINRAYEIGDTIDFEVTPRDFGRIAAQTAKQVIMQRVREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ EI++G V+R + V V+LGN + V+ + + + E DR+K Y+Y Sbjct: 124 QMIYNQYSRYENEIMTGEVERRDSRYVYVNLGNVEAVLSKRDQVPGEVYNSHDRIKVYVY 183 Query: 188 DV------------------RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 V +R RGPQV +SR+HP + ++F EVPEI++G V++K++ Sbjct: 184 KVVDPNENQNAEQNEEEGKKKRRNRGPQVYVSRSHPDLLKRMFENEVPEIFDGTVEIKSI 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +R+ G RAK+AV S IDP+G CVG RG RV+A+V EL EK+DIV WS D + ++ Sbjct: 244 AREAGDRAKIAVCSDQEGIDPIGTCVGPRGERVKAIVEELNGEKMDIVEWSEDPSEYIKA 303 Query: 290 ALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 AL+PA + +V D ED V+VP QLSLAIG+RGQN RLA+ LTG+ IDI +E Sbjct: 304 ALKPAEILEVRFDREDDHACTVVVPDTQLSLAIGKRGQNARLAAHLTGYKIDIKSE 359 >gi|225849798|ref|YP_002730032.1| transcription termination factor NusA [Persephonella marina EX-H1] gi|225646384|gb|ACO04570.1| transcription termination factor NusA [Persephonella marina EX-H1] Length = 374 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/359 (41%), Positives = 224/359 (62%), Gaps = 19/359 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++L + +AVA EK++ +++ + D I A + YG +++V + E ++ + Sbjct: 3 VKLKNVIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLLKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V VEN ISL+ A+ DP ++G V PL + GR+A+ +AK+VI KV E Sbjct: 63 RVTPFVENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVARVE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ + EFK+ G+I++GTV+R E G++IVDLG + V+ +E I +E R GDR+++ I Sbjct: 123 KNILFKEFKELEGKIVTGTVRRFEDGDIIVDLGRIEAVLPEEEQIKKEKYRVGDRIRALI 182 Query: 187 YDVRRE------QRG-------------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 V ++ +RG P V+LSRTHP F+ KL +EVPEI G +++K Sbjct: 183 LKVIKDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEIEIK 242 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A++R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL EKID++ W PD A F+ Sbjct: 243 AIAREPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPAQFI 302 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + AL P+ K L ED RIEV VPK +LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 303 LRALSPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSEED 361 >gi|291296311|ref|YP_003507709.1| NusA antitermination factor [Meiothermus ruber DSM 1279] gi|290471270|gb|ADD28689.1| NusA antitermination factor [Meiothermus ruber DSM 1279] Length = 392 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/302 (45%), Positives = 205/302 (67%), Gaps = 4/302 (1%) Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108 I V ++P+ G + + + VVEEV++ +I L+ A+ DP +++G + P+ P +F R Sbjct: 55 IEVHLDPQEGHLEVLEIRRVVEEVKDPDKEIDLETAKKYDPEVEVGEEMEFPVDPEEFSR 114 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRR 167 +AVQ AKQV+ Q+++EAER R + E+KDK GE+++G+V RV+ GNV V+LG + ++ + Sbjct: 115 IAVQIAKQVLTQRLKEAERTRVHNEYKDKEGEVVTGSVARVDNRGNVYVELGRGEALMPQ 174 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E I E PG R+K Y+ V+R +GP +++SR H + + L EVPEI GIV+VK Sbjct: 175 KEQIPTERYHPGQRIKVYLKQVQRSSKGPSLVVSRAHEELLRYLLRQEVPEIAEGIVEVK 234 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 AV+R+PGSR+K+AV S + ++DP+GAC+G +G R+QAV EL E+IDI+ WSP+ F+ Sbjct: 235 AVAREPGSRSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGRERIDIIQWSPNPKEFI 294 Query: 288 INALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NAL PA V ++ ++ R V+V K+Q SLAIG+ GQNVRLAS+LTG+ I+ Sbjct: 295 RNALSPATVGEITIENSENGQNRASVVVAKDQHSLAIGKAGQNVRLASKLTGYEINFEEA 354 Query: 345 EE 346 EE Sbjct: 355 EE 356 >gi|300087631|ref|YP_003758153.1| transcription termination factor NusA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527364|gb|ADJ25832.1| transcription termination factor NusA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 500 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 217/327 (66%), Gaps = 1/327 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++ EK++ ++VVL+ + ++ A R + +I+ E++ TG I ++ +VVE+V + Sbjct: 12 LSAEKNLSKEVVLAAVEAALVSAYRKESFTPNQNIQAELDTMTGKIKVWAEKKVVEKVTD 71 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +++L AR +PSI +G V P D GR+A Q+AKQVI+Q++ EAE E+ Sbjct: 72 RRIEVTLDEARKVNPSIQLGEPVLIEDTPHDAGRIAAQTAKQVILQRLHEAENTAIVDEY 131 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K G+I+SG ++RVE VI+DLG ++ V+ E + E RPG R+K ++ +V + Sbjct: 132 AGKAGDIVSGVIQRVEPKQVIIDLGRAEAVMPPSEQVYTERYRPGQRLKVFLVEVATTIK 191 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G V++SR+HP + +LF ME+PEIY+G+V++KAV+R+ G+R+K+AV + S IDPVG C Sbjct: 192 GATVIVSRSHPGLLRRLFEMEIPEIYSGMVEIKAVAREGGARSKVAVSARQSGIDPVGCC 251 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG+RG R+Q +V+EL EKID++ WS D A + NAL PA V +V+++E + ++P Sbjct: 252 VGLRGIRIQNIVSELNGEKIDVIPWSEDPALLITNALSPAQVVRVIINEALKSATAVIPD 311 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 Q SLAIG+ GQNVRLA +LTGW IDI Sbjct: 312 RQQSLAIGKEGQNVRLAVKLTGWRIDI 338 >gi|187931005|ref|YP_001890989.1| transcription elongation factor NusA [Francisella tularensis subsp. mediasiatica FSC147] gi|187711914|gb|ACD30211.1| transcription termination factor NusA [Francisella tularensis subsp. mediasiatica FSC147] Length = 489 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 288/473 (60%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 417 ---VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELL 466 >gi|167627171|ref|YP_001677671.1| transcription elongation factor NusA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597172|gb|ABZ87170.1| transcription elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 489 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 286/473 (60%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ ++ K+G+I+ G VKR Y +++DLGN ++G++ + + ISRE R GD+++ Sbjct: 124 FEREKTARFYQSKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDKIR 183 Query: 184 SYIYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 S + V ++ G V+LSR + LF +EVPE+ ++ V V R+PG R+K+ V Sbjct: 184 SCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +E+L ++ G++ ++ L +N I TME+LA SVD+LL Sbjct: 417 ---VILSQALGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDELL 466 >gi|206901624|ref|YP_002250930.1| transcription termination factor NusA [Dictyoglomus thermophilum H-6-12] gi|206740727|gb|ACI19785.1| transcription termination factor NusA [Dictyoglomus thermophilum H-6-12] Length = 364 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 146/335 (43%), Positives = 219/335 (65%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + + EK +D++VVL + ++ A + YGT RVEIN +IS+F + +VVE+ Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFVVKKVVEK 69 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ P +G + + P +FGR+AVQ AKQVI+Q ++EAER Y Sbjct: 70 VNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERRILY 129 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++K K GE+++GTV R+E GNV V + + V+ E I E G R+++Y+ +VR+ Sbjct: 130 EKYKAKEGELVNGTVVRIEKGNVYVRFPDIEAVLPVKEQIPGEEYWIGRRLRAYLLEVRK 189 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+ Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + E+ + VI Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIREEEHKAIVI 309 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQ 344 >gi|168187910|ref|ZP_02622545.1| transcription termination factor NusA [Clostridium botulinum C str. Eklund] gi|169294236|gb|EDS76369.1| transcription termination factor NusA [Clostridium botulinum C str. Eklund] Length = 348 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 143/343 (41%), Positives = 222/343 (64%), Gaps = 5/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I +++ + D++ A + Y G +++V I+ E G+I ++ Sbjct: 4 EFIEALREIVKEKGIGEELLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 ++ EE +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKIEEEPSGVN-EISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQRIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E ++K Sbjct: 123 EAERKVIYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQKLK 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +GPQV++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S Sbjct: 183 LYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGIVEIKSIAREAGSRTKIAVYS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V +D+ Sbjct: 243 NDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDIDD 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 303 ENKSAKIVVEDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQ 345 >gi|241667733|ref|ZP_04755311.1| transcription elongation factor NusA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876277|ref|ZP_05248987.1| transcription elongation factor nusA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842298|gb|EET20712.1| transcription elongation factor nusA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 489 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 286/473 (60%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ ++ K+G+I+ G VKR Y +++DLGN ++G++ + + ISRE R GD+++ Sbjct: 124 FEREKTARFYQGKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDKIR 183 Query: 184 SYIYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 S + V ++ G V+LSR + LF +EVPE+ ++ V V R+PG R+K+ V Sbjct: 184 SCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +E+L ++ G++ ++ L +N I TME+LA SVD+LL Sbjct: 417 ---VILSQALGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDELL 466 >gi|169350438|ref|ZP_02867376.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552] gi|169292758|gb|EDS74891.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552] Length = 432 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 147/336 (43%), Positives = 221/336 (65%), Gaps = 1/336 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I++DV L ++ +SI KA + Y + +++RVEIN +TG LF L Sbjct: 4 IKFMEALNLLIEEKGIEKDVFLEMLKESIAKAYKKNYLNSDANVRVEINEKTGKFRLFEL 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+++E+ ++SL+ A+ +P IG VV GR+A KQ+ QK+RE Sbjct: 64 RTVVDDLEDEDLELSLEEAQAINPFYKIGDVVETEADVEHIGRLAAIQTKQLFRQKIRET 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EF DK +II+G V RVE IV++G + + ++ I E L+ G +K Y Sbjct: 124 EKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLALNQQIPGEKLKEGQHLKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV R +G +++SRT P F+ +LF +EVPE+++G V++KAVSR+PG R+K+AV++S+ Sbjct: 184 VCDVDRGTKGTHIVVSRTEPNFVKRLFELEVPEVFDGTVEIKAVSREPGERSKIAVYASN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E Sbjct: 244 ENIDPIGSCVGPKGSRVKNVVDELNGEMIDIIIWSNDPVEFISNALSPSEVKYVSINEKD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VIVP +QLSLAIG+RGQN RLA +LTGW IDI Sbjct: 304 HSALVIVPDDQLSLAIGKRGQNARLAVRLTGWKIDI 339 >gi|329767072|ref|ZP_08258600.1| transcription termination factor NusA [Gemella haemolysans M341] gi|328837797|gb|EGF87422.1| transcription termination factor NusA [Gemella haemolysans M341] Length = 343 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 145/340 (42%), Positives = 212/340 (62%), Gaps = 2/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + SL+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFSLEDALQINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K YI Sbjct: 124 EILYKEYIEHEGEILSGTVDRIDSRYVYVKLGKIEAILGENERVKGETYIPQTPIKVYIA 183 Query: 188 DVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V RG P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ D Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYAED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE+ Sbjct: 244 KNIDPVGACVGNKGDRVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEITIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V +QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDIKATE 343 >gi|319937395|ref|ZP_08011802.1| transcription termination-antitermination factor [Coprobacillus sp. 29_1] gi|319807761|gb|EFW04354.1| transcription termination-antitermination factor [Coprobacillus sp. 29_1] Length = 481 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 247/392 (63%), Gaps = 8/392 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +Q + + EK I+++VVL + ++++K+ + YG S IRV+IN G I L+ + Sbjct: 6 FIQALELLESEKGIEKEVVLEALKEALEKSYKKNYGGPESIIRVDINENNGKIRLYEIKH 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + ++SL+ A+ +P IG V + + P FGR+A KQ++ QK+REAE+ Sbjct: 66 VVDDVNDEDFELSLEEAQMINPKYQIGDDVVNEIDPEVFGRLAAVQTKQLLKQKIREAEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +II+G V RVE I+++G + ++ ++ I E + G +K Y+ Sbjct: 126 ETLYNEFVDKKDDIITGIVDRVEERFAIINIGRTGALLPSNQQIPGETIYEGQHLKVYVS 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV R +G + +SRT P + +LF MEVPEIY+G V++K+VSR+ G R+K+AV++++ + Sbjct: 186 DVERNTKGTHIGVSRTEPGLVKRLFEMEVPEIYDGTVEIKSVSREAGDRSKIAVYTTNEN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+G+CVG +GSRV+ VV EL E IDIV W+ + F+ +AL P+ V V ++E+ Sbjct: 246 VDPIGSCVGPKGSRVRNVVNELNGEMIDIVEWNENPVIFISHALSPSEVVNVDINENDHS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS----INRQKDFNERTQFFM 363 VIVP QLSLAIG++GQN RLA +LTGW IDI + E + I Q E+T F+ Sbjct: 306 ALVIVPDNQLSLAIGKKGQNARLAVRLTGWKIDIKSVSEAAREGIIYGQDAEFEKT--FV 363 Query: 364 QAINVDE-IIAHLLVAEGFADVEELACVKISE 394 + + DE +I +++ E F ++E++ I+E Sbjct: 364 EEMTKDEPVIEDVMIEESFEELEDIIEEPITE 395 >gi|257066114|ref|YP_003152370.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548] gi|256797994|gb|ACV28649.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548] Length = 433 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 219/333 (65%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I +F L EVV+EV+ Sbjct: 10 DELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFALKEVVDEVD 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISLK A + + S +G + L P +FGRVA Q+A+ ++IQK+R+A+RD Y E Sbjct: 70 DTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDAQRDSLYGE 129 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + ++ E+I+GT++R + NV V+L +GV+ E + E ++K I +VR Sbjct: 130 YIERANEMITGTIQRQDKYNVYVNLDKIEGVVPIKEQVPTEEYPANAKMKFLIKEVRNSS 189 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 + PQ++LSR+ + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D ID VGA Sbjct: 190 KEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSNDEGIDAVGA 249 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 C+G +G RV ++V EL+ EKIDI+ + D F+ NAL PA + +V+++E + V+V Sbjct: 250 CIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNEKSKKSLVVVS 309 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +QLSLAIG+ GQN RLA++LTGW IDI + EE Sbjct: 310 SDQLSLAIGKEGQNARLAARLTGWKIDIKSSEE 342 >gi|289450259|ref|YP_003474585.1| transcription termination factor NusA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184806|gb|ADC91231.1| transcription termination factor NusA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 372 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 147/354 (41%), Positives = 224/354 (63%), Gaps = 2/354 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS--DIRVEINPETGDISLFR 64 +EL++ + E+ ID +++ + +++ A + + S +IR E++ ETGD+ +F Sbjct: 3 VELIEAIKLLEKERGIDAEILFQSIEEALVSAYKREFDVKSSDNIRAEVDRETGDMQVFL 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 EVVEEV + + Q+SL+ AR P DIG V+ L P DFGR+A +AK VI QK+ Sbjct: 63 EKEVVEEVADSSLQVSLEEARKFSPDFDIGDVLEYQLSPQDFGRLAAATAKNVINQKLCN 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER+R EF ++ E+ +G V+R + +VIVD+G ++ ++ +E + EN +++ Sbjct: 123 AERERIQNEFSSRINELANGVVQRRDRRDVIVDIGRAEAILPGNEQVRGENYDFNKQMRL 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V + P V +SR+HP + KLF EVPEI +G V++ AVSR+ GSR+K+AV S+ Sbjct: 183 YILRVNEKMGRPVVYVSRSHPNLVRKLFEHEVPEIKDGTVEIMAVSREAGSRSKIAVRSN 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++DP+GACVG RG RVQAV+ EL E+IDI+ WSP+ F+ NAL PA V V + + Sbjct: 243 NENVDPLGACVGQRGMRVQAVMDELNGERIDIIQWSPNPEEFIANALSPAKVVSVEVAPE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+VP QL+LAIG+ GQN LA++LTGW IDI +E + N +++ R Sbjct: 303 SKMAAVVVPDNQLALAIGKEGQNAHLAARLTGWKIDIKSESQVRQNLEQELIHR 356 >gi|157363142|ref|YP_001469909.1| transcription elongation factor NusA [Thermotoga lettingae TMO] gi|157313746|gb|ABV32845.1| NusA antitermination factor [Thermotoga lettingae TMO] Length = 344 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 220/336 (65%), Gaps = 1/336 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L LL D + EK I +D ++ ++ ++ A + +GT ++ V+I+ TGDI LF++ Sbjct: 3 LGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQVF 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVEEVE+ Q+S++ AR DP + G + + +FGR+A Q+AKQV+IQ++RE E Sbjct: 63 DVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIRELE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++RQY + G +I+ V RV + +G + + + E IS E++ G+ +K Y+ Sbjct: 123 KERQYEHYSTLAGSVITVEVIRVTSDWADIRVGKIETRLPKREWISGESISAGELIKVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V ++++GP++++SR P+F+ L +E+PEI N IVQ+KA+ R+PG R K+AV S++ Sbjct: 183 QSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVSTNP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 +DPVGAC+G GSR+ A++ EL+ EK+DI W+ D ++NAL PA VT V +LD + Sbjct: 243 QVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILDFER 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 303 KAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|118443498|ref|YP_878211.1| transcription elongation factor NusA [Clostridium novyi NT] gi|118133954|gb|ABK60998.1| transcription termination factor NusA [Clostridium novyi NT] Length = 348 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 143/343 (41%), Positives = 221/343 (64%), Gaps = 5/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLF 63 E ++ + EK I ++ + D++ A + Y G +++V I+ E G+I ++ Sbjct: 4 EFIEALREIVKEKGIGEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 ++ EE +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+++ Sbjct: 64 AQKKIEEEPSGVN-EISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQRIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E ++K Sbjct: 123 EAERKVVYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQKLK 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V+VK+++R+ GSR K+AV+S Sbjct: 183 LYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGVVEVKSIAREAGSRTKIAVYS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V +D+ Sbjct: 243 NDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDIDD 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 303 ENKSAKIVVEDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQ 345 >gi|237734616|ref|ZP_04565097.1| transcription termination-antitermination factor [Mollicutes bacterium D7] gi|229382436|gb|EEO32527.1| transcription termination-antitermination factor [Coprobacillus sp. D7] Length = 443 Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 146/324 (45%), Positives = 215/324 (66%), Gaps = 1/324 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF L VV+++++ Sbjct: 16 EKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFELRTVVDDLDDEDI 75 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE E++ Y EF DK Sbjct: 76 ELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRETEKETLYNEFADK 135 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +II+G V RVE IV++G + + ++ I E L G +K Y+ DV R +G Sbjct: 136 KDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKVYVSDVDRGTKGTH 195 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S+ +IDP+G+CVG Sbjct: 196 IVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTSNENIDPIGSCVGP 255 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+ V+VP +QL Sbjct: 256 KGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEENHSALVVVPDDQL 315 Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341 SLAIG+RGQN RLA +LTGW IDI Sbjct: 316 SLAIGKRGQNARLAVRLTGWKIDI 339 >gi|167756908|ref|ZP_02429035.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402] gi|167703083|gb|EDS17662.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402] Length = 448 Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 146/324 (45%), Positives = 215/324 (66%), Gaps = 1/324 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF L VV+++++ Sbjct: 16 EKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFELRTVVDDLDDEDI 75 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE E++ Y EF DK Sbjct: 76 ELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRETEKETLYNEFADK 135 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +II+G V RVE IV++G + + ++ I E L G +K Y+ DV R +G Sbjct: 136 KDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKVYVSDVDRGTKGTH 195 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S+ +IDP+G+CVG Sbjct: 196 IVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTSNENIDPIGSCVGP 255 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+ V+VP +QL Sbjct: 256 KGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEENHSALVVVPDDQL 315 Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341 SLAIG+RGQN RLA +LTGW IDI Sbjct: 316 SLAIGKRGQNARLAVRLTGWKIDI 339 >gi|172057849|ref|YP_001814309.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15] gi|171990370|gb|ACB61292.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15] Length = 375 Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 153/350 (43%), Positives = 224/350 (64%), Gaps = 5/350 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLL 66 +LL+ + +A EK ID+++++ + ++ A R +G S+ ++VE + +TGDI +F L Sbjct: 4 QLLEAIEQIAKEKEIDKNIIIDALEQALISAYRRNFGKESEAVKVEFDQQTGDIRVFALK 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE + Q+SL+ A + DP+ ++G + P DFGRVA Q+AKQ++ QK+REAE Sbjct: 64 EVVERLTQPEEQLSLEEAHEIDPTYELGDFHKVEVTPGDFGRVAAQTAKQIVTQKMREAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+R Y F D+ EI++G V+R + N+ V+L + V+ E + E + +K Y+ Sbjct: 124 RERIYNHFADREDEIMTGMVERQDARNLYVNLEGIEAVLTTHEQMPNERFGIREYIKVYV 183 Query: 187 Y--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 D + G +L+SRTHP + +LF +EVPEI +G V+VK+V+R+ G R+K+AV S Sbjct: 184 TKVDPMVKGSGASILVSRTHPGLLKRLFEIEVPEIASGEVEVKSVAREAGDRSKIAVASD 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + IDPVGACVG +G+RVQ +V EL EKIDIV +S D +V NAL PA V V ++E Sbjct: 244 E--IDPVGACVGQKGARVQRIVNELNGEKIDIVRYSDDPKEYVANALSPAQVVAVYVNEP 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E KD Sbjct: 302 AKATIVVVPDFQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAESMELKD 351 >gi|160932906|ref|ZP_02080295.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753] gi|156867980|gb|EDO61352.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753] Length = 361 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 146/340 (42%), Positives = 214/340 (62%), Gaps = 3/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ + + E+ I D +L + +I A +S Y D + +NP+TG ++ Sbjct: 4 EVFEALSLLEKERGIPVDFMLDKIKKAILTACKSSYNGNDDAIINMNPDTGVFEVYLQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL AR+ DP+ +G V L FGR+A Q+A+ +I Q +R+ ER Sbjct: 64 VVEEVEDKGREISLLDAREIDPNTAVGEKVGVQLDTKQFGRIAAQTARNIIRQGIRDGER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF+ + E+++ TV+R++ G + +G ++ V+ + E + E LR GD VK Y Sbjct: 124 GQMMQEFQSRHQELVTATVERIDPRSGAATLKIGKAEAVLPKSEQVGGEELREGDHVKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+ ++GP+ ++SRTHP + +LF EVPEIY+G V++K+VSR+ GSR KLAV+S D Sbjct: 184 VVDVKETEKGPRAMISRTHPDLVKRLFETEVPEIYDGTVEIKSVSREAGSRTKLAVWSKD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++D VGAC+G RG+RV VV EL EKIDI+ +S D A F+ AL PA V V +D D Sbjct: 244 PNVDAVGACIGARGARVGNVVNELGGEKIDIIEYSEDPAKFIAAALSPADVLSVEVDPDG 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +V VP QLSLAIG +GQN RLA++LTGW IDI E Sbjct: 304 MKACQVTVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPE 343 >gi|154497680|ref|ZP_02036058.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC 29799] gi|150273178|gb|EDN00323.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC 29799] Length = 400 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 148/330 (44%), Positives = 214/330 (64%), Gaps = 7/330 (2%) Query: 19 EKSIDRDVVLSVMADSIQKA-ARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 EK I + +L + ++ A R G +I VE + E G++ ++ +VVE V+N Sbjct: 29 EKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMYVKKDVVETVDNPYT 88 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++SL AR R P I +G VV + DFGR+A Q+A+QVIIQ +REAER Y EF K Sbjct: 89 EVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMREAERGMIYDEFSSK 148 Query: 138 VGEIISGTVKRVE--YGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+++G V R++ G+ + +G+ +D + E + E R GDR+K Y+ +VRR Sbjct: 149 EHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFREGDRLKVYVVEVRR 208 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GPQVL+SRTHP + +LF +EVPEI++G V+VK+++R+ GSR KLAV+S+D ++DP+ Sbjct: 209 STKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRTKLAVWSADPNVDPI 268 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG RG RV +V EL+ EK+DI+ +S D A +V AL PA V V +D V+ Sbjct: 269 GACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVISVTTLDDGKSCRVV 328 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VP +QLSLAIG+ GQN RLA++LTG+ IDI Sbjct: 329 VPDDQLSLAIGKEGQNARLAAKLTGFKIDI 358 >gi|116333944|ref|YP_795471.1| transcription elongation factor NusA [Lactobacillus brevis ATCC 367] gi|116099291|gb|ABJ64440.1| Transcription elongation factor [Lactobacillus brevis ATCC 367] Length = 401 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 148/342 (43%), Positives = 213/342 (62%), Gaps = 1/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK ID+ VV+ + ++ A + Y ++ VE + GDI ++ + + Sbjct: 4 ELLGALDVLETEKGIDKQVVIDALEAALVSAYKRNYDQAQNVEVEFDQRKGDIHVYAVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + ++ L A + ++G + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDQVYDSRLEVGLDEALTINKGYELGDDIKFEVTPKNFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++ EI++G V+R + V V LG + V+ R + + E R DRVK Y+ Sbjct: 124 NIIYNQYSQYENEIVTGEVERQDSRFVYVSLGKVEAVMGRQDQMPNETYRIHDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTH + +LF EVPEIY+G V++ A++R+ G RAK+AV S++ Sbjct: 184 RVENATKGPQVFVSRTHADLLKRLFEQEVPEIYDGTVEIMAIAREAGDRAKVAVRSNNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG VG RG RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R Sbjct: 244 IDPVGTSVGPRGQRVQTIVNELGGENMDIVEWTDDEAKFIANALNPAEVLDVIFDPNNER 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 EVIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E S Sbjct: 304 ACEVIVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSESEAS 345 >gi|89257073|ref|YP_514435.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica LVS] gi|115315429|ref|YP_764152.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica OSU18] gi|156503283|ref|YP_001429348.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009460|ref|ZP_02274391.1| transcription termination factor NusA [Francisella tularensis subsp. holarctica FSC200] gi|290954351|ref|ZP_06558972.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica URFT1] gi|295312215|ref|ZP_06803015.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica URFT1] gi|89144904|emb|CAJ80249.1| N utilization substance protein A [Francisella tularensis subsp. holarctica LVS] gi|115130328|gb|ABI83515.1| N utilization substance protein A [Francisella tularensis subsp. holarctica OSU18] gi|156253886|gb|ABU62392.1| transcription termination factor NusA [Francisella tularensis subsp. holarctica FTNF002-00] Length = 489 Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 287/473 (60%), Gaps = 19/473 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E E+ Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEIKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+ G R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREHGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +Q E+ Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQE-EKQMSIVEK 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 363 ---FVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA--- 416 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + L + + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 417 ---VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELL 466 >gi|219850522|ref|YP_002464955.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485] gi|219544781|gb|ACL26519.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485] Length = 442 Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/331 (42%), Positives = 215/331 (64%), Gaps = 5/331 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFRLLEVVEEV 72 +A E+ I ++ ++ VM ++ A + L G ++ V+++P +G ++ +VV+EV Sbjct: 12 IASERGIPKEAIIDVMERALVSAYKRLLGPNPPAVEVTVKLDPVSGMARVYAEKQVVDEV 71 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I L AR P + IG V P DFGR+A Q+AKQV++Q ++E ER Y Sbjct: 72 YDERFEIDLNSARQIKPDVQIGETVLVESTPRDFGRIAAQTAKQVVLQGIKEIERSYIYS 131 Query: 133 EFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 EF+D+ GE+++ TV+R GNVI+++G ++ +I E ++ + G R+K + +V+ Sbjct: 132 EFEDREGELVTATVQRNNGPRGNVILEIGKAEAIIPPKEQVANDRYYHGQRLKVLLLEVK 191 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 ++ RGP+++ SR H + +LF MEVPEIYNG V++K+V+R+PG R K+AV + IDP Sbjct: 192 KDDRGPRLIASRAHKNLINRLFEMEVPEIYNGSVEIKSVAREPGLRTKVAVAARQEGIDP 251 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V L + V Sbjct: 252 VGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVHLHDHDHTALV 311 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 IVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 IVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 342 >gi|326803576|ref|YP_004321394.1| transcription termination factor NusA [Aerococcus urinae ACS-120-V-Col10a] gi|326651243|gb|AEA01426.1| transcription termination factor NusA [Aerococcus urinae ACS-120-V-Col10a] Length = 455 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 224/362 (61%), Gaps = 2/362 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+Q + + EK I +D ++ + ++ A + + ++ V + + G ++ + E Sbjct: 4 QLIQAFEMLEQEKGISKDTIIDAVQSALVFAYKRNFDQAQNVEVVFDDKKGSFHVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI Q++REAER Sbjct: 64 VVETVMDSNLEVSLEDALEINRGYEIGDKIRCEVTPEDFGRIAAQTAKQVITQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF D ++++GTV+R + + V+LG + V+ + I E +P DR++ Y+ Sbjct: 124 EIIYEEFIDYEDDLLTGTVERQDRRYIYVNLGKIEAVLTPEGQIPGEYFQPHDRIQVYVE 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SRTHP + +LF EVPEIY+G V++++++R+ G R+KLAV+S+D + Sbjct: 184 RVENTTKGPQIYVSRTHPNMLKRLFEQEVPEIYDGTVEIRSIAREAGDRSKLAVYSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG RGSRVQ VV EL+ E +DI+ W D A + NAL PA V V + Sbjct: 244 VDPVGTCVGPRGSRVQTVVNELKGENMDIIEWDEDPAVLIANALNPADVLAVHFVPNEQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP LSLAIG+RGQN RLA++LTG+ IDI +E E +D E + F+Q N Sbjct: 304 CVVVVPDNHLSLAIGKRGQNARLAAKLTGYKIDIKSETE--YEDYQDSEEYKETFLQDQN 361 Query: 368 VD 369 ++ Sbjct: 362 LE 363 >gi|241889783|ref|ZP_04777081.1| transcription termination factor NusA [Gemella haemolysans ATCC 10379] gi|241863405|gb|EER67789.1| transcription termination factor NusA [Gemella haemolysans ATCC 10379] Length = 343 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/336 (42%), Positives = 211/336 (62%), Gaps = 2/336 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNVAKNVRVDFNRTTGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ + GEI+SGT+ R++ V V LG + ++ +E + E P +K YI Sbjct: 124 EILYKEYIEHEGEILSGTIDRIDSRYVYVKLGKIEAILGENERVKGETYVPQTPIKVYIA 183 Query: 188 DVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V RG P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ D Sbjct: 184 KVDNPTRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYAED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE+ Sbjct: 244 KNIDPVGACVGNKGERVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEINIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +QLSLAIG++GQNVRLA++LTGW IDI Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339 >gi|187735458|ref|YP_001877570.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835] gi|187425510|gb|ACD04789.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835] Length = 431 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/426 (37%), Positives = 251/426 (58%), Gaps = 24/426 (5%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFRLLEV 68 + D EK + R+ +L + + A R + G+++ +R EIN + G + +F LEV Sbjct: 8 LIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVRIFADLEV 67 Query: 69 V--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP----PMDFGRVAVQSAKQVIIQKV 122 V EE + QI L +A +D V+ D LP P FGR+AVQ+A+Q ++QK+ Sbjct: 68 VPDEEYSDKFNQIPLSLA----VKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTMLQKL 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +AE++ Y EFKD+ G++++GT++R E G++ VDLG +GV+ E + E+ GDR+ Sbjct: 124 LDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGKFEGVMTSRERVPNEDYSVGDRM 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGP+V+LSR+HP + +LF EV EI + V++ ++R+ G R K+AV Sbjct: 184 RFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTKVAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DPVGACVGMRG+RV+ +V EL +EK+DI+ W+ D TFV AL P ++ +D Sbjct: 244 SHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPREITVD 303 Query: 303 EDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDI-ITEEEDSINRQ-------- 352 E+ +I VIV ++ LS AIGRRGQN RL S+L GW + + + + +++ RQ Sbjct: 304 EEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAAAEEV 363 Query: 353 -KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + + + + E A LV G D+ L + S+IA G E A +I Sbjct: 364 MRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAAQILD 423 Query: 412 RAREYL 417 +AR+ + Sbjct: 424 KARDLI 429 >gi|283782403|ref|YP_003373158.1| NusA antitermination factor [Pirellula staleyi DSM 6068] gi|283440856|gb|ADB19298.1| NusA antitermination factor [Pirellula staleyi DSM 6068] Length = 404 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 243/410 (59%), Gaps = 37/410 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+I D++ EK+ID+DVV + ++ AA+ YG +DI + I+ TG +S Sbjct: 2 NPADMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALS--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF-GRVAVQSAKQVIIQKVR 123 G L P + GR+ Q+AKQVIIQK+R Sbjct: 59 -----------------------------GIADGQALDPEEISGRIGAQTAKQVIIQKIR 89 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD E+ D++G++I+G V R E IV LG + ++ R E I E P +RV+ Sbjct: 90 EAERDSLLGEYGDQIGQLINGVVTRSEGAATIVSLGTIEAILPRSEQIPGETHHPNERVR 149 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +++V+ + +V+LSRT PQF+ +LF E+PEI +G++ V A++R+P R+K+AV S Sbjct: 150 AIVFEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVSS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +D VGACVG+RG+R++ +V EL E+IDIV WS D+ T + +L+PA V +V+L + Sbjct: 210 TDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLCD 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR V+V ++QLSLAIGR+GQNVRLAS+L GW I+I+T +E ++ + F Sbjct: 270 MIGRAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDE----LEQQIDRAVGGFS 325 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + V E +A LV +G+ ++L+ ++ + + G EE EI +A Sbjct: 326 KIEGVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQA 375 >gi|160892797|ref|ZP_02073587.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50] gi|156865838|gb|EDO59269.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50] Length = 393 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 219/338 (64%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + EK+I +D++L + S++ A + + T +I V ++ ETG+ ++ E Sbjct: 3 EIIEALNQLEKEKNISKDILLDAIERSLKAACKKDFDTDENIDVVMDRETGEFHVYAKKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE QISL+ A+ + D+G +++ + DFGR+A Q A+ VI+Q + E+ER Sbjct: 63 VVEEVERPATQISLEKAKMMNSKYDLGDIINIEITTKDFGRIAAQRARNVIVQAINESER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 D Y F K +II+G V+R N+ V L + ++ +++ E + E GDR+K Y+ Sbjct: 123 DAIYDHFYTKEKDIITGIVQRYVGNNINVSLDDKTEAILKESEMVPGEVYNRGDRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ RGP++ +SRTHP + +LF EV EI +G V++K+ R+ GSR+K+AV+S D Sbjct: 183 TEVKKGSRGPKITVSRTHPDLVKRLFEKEVTEIADGTVEIKSSCREAGSRSKIAVYSHDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ GSRV VV +L EKIDI+ W + A F+ NAL P+ V V +D + Sbjct: 243 NVDPVGACVGVNGSRVNNVVEDLNGEKIDIICWDENPAIFIKNALSPSEVIAVDVDLNEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG++GQN RLA++LTG+ IDI +E Sbjct: 303 SAFVVVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKSE 340 >gi|297565903|ref|YP_003684875.1| transcription termination factor NusA [Meiothermus silvanus DSM 9946] gi|296850352|gb|ADH63367.1| transcription termination factor NusA [Meiothermus silvanus DSM 9946] Length = 393 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 144/341 (42%), Positives = 214/341 (62%), Gaps = 10/341 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDISLFRLL 66 VA E+ + D +++ +S++ A G + V ++P G + + + Sbjct: 12 VALERGVTADELITAFEESLRLAYLRQKGYKPKDVEEGLGPVVEVHLDPAGGGLEVLEIK 71 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE+VE+ +ISL A DP + +G + P+ P +F R+AVQ AKQV+ Q+++EAE Sbjct: 72 TVVEKVEDPDKEISLADALAYDPDVQLGEEMEFPVDPEEFSRIAVQIAKQVLTQRLKEAE 131 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+R + E+KDK GE+I+G V RV+ GNV VDLG + ++ E I E PG RVK Y Sbjct: 132 RNRVHTEYKDKEGEVITGQVTRVDNRGNVYVDLGRGEALMPPKEQIPSERYHPGQRVKVY 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V+R +GP +++SR + + L EVPEI GIV++KAV+R+PGSR+K+AV S + Sbjct: 192 LKQVQRSAKGPSLIVSRASEELLKYLLRQEVPEINEGIVEIKAVAREPGSRSKVAVTSHN 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DP+GAC+G +G R+QAV EL E++DI+ WS + F+ NAL PA V + D + Sbjct: 252 PNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSANPREFIRNALSPAQVGNIETDNET 311 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R +V+V K+Q SLAIG+ GQNVRLAS+LTG+ ID EE Sbjct: 312 KRAKVVVSKDQHSLAIGKAGQNVRLASKLTGYEIDFEEAEE 352 >gi|241895994|ref|ZP_04783290.1| transcription elongation factor [Weissella paramesenteroides ATCC 33313] gi|241870725|gb|EER74476.1| transcription elongation factor [Weissella paramesenteroides ATCC 33313] Length = 386 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 142/339 (41%), Positives = 222/339 (65%), Gaps = 2/339 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ EK I +V+++ + ++++KA Y ++ V+ + + G I ++ + Sbjct: 14 ELVSALDALEEEKGIKAEVLIAALEEALKKAYEKNYDESENVEVQFDKKKGSIKVYAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E+E QISL+ A + + + ++G + + P DFGR+A Q+AKQ+I+QKVREAER Sbjct: 74 VVDEIEEPYEQISLEEALELNKAYEVGDEIRFEVTPKDFGRLAAQTAKQIIMQKVREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186 Y F EII+G V+R + + + L GN ++ ++ + EN + GD++K + Sbjct: 134 GVVYDNFVGYEDEIITGEVEREDSRYLYIILPGNQMAAMKPNDQMPSENYQMGDKIKVLV 193 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V+ EQ+GPQV +SRTHP + +LF EVPE+++G V++K+++R+ G R+K+AV+S + Sbjct: 194 SQVQNEQKGPQVFVSRTHPDLVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSHNE 253 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++D VG VG RG+RVQ+VVTEL E +DIV W+ D A F+ N+L PA V +V+ D Sbjct: 254 NLDAVGTMVGQRGARVQSVVTELSGENMDIVEWTEDPAEFIKNSLNPAEVVEVIFDPTND 313 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 R V+VP QLSLAIG+RGQN RLA++LTG+ IDI E Sbjct: 314 RAATVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPE 352 >gi|260583738|ref|ZP_05851486.1| transcription termination factor NusA [Granulicatella elegans ATCC 700633] gi|260158364|gb|EEW93432.1| transcription termination factor NusA [Granulicatella elegans ATCC 700633] Length = 369 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/337 (40%), Positives = 213/337 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + EK I ++VV++ + ++ A + YG ++ VE + + G + ++ + E Sbjct: 4 EMIKALNILEEEKGISKEVVITALEAALVSAYKKNYGQAQNVEVEFDAKKGKMHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T ++S+ A + + ++G + + P DFGR+A Q+AKQVI+Q++R+AER Sbjct: 64 VVEYVFDSTLEVSIDEAHELHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + EI++G V R ++ V V+LG + + + I E P R+K + Sbjct: 124 TNIYNEFIEYENEIMTGVVDRQDFRYVYVNLGKIVAGMTKQDQIPTEEYLPDQRIKVLVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GP + +SRTHP + +LF EVPEIY G+V++ +++R+ G RAK+AV S D++ Sbjct: 184 KVDNTTKGPLIFVSRTHPDLLKRLFEQEVPEIYEGVVEIVSIAREAGDRAKVAVRSRDTN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG RG RVQ +V EL E +DIV W+ D + ++ NAL PA V KV D D Sbjct: 244 LDPVGTCVGPRGQRVQNIVNELNGENMDIVEWNEDPSVYIANALNPAQVVKVDFDSDRNS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 CIVVVPDHQLSLAIGKRGQNARLAAKLTGFRIDIKSE 340 >gi|289522943|ref|ZP_06439797.1| transcription termination factor NusA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503486|gb|EFD24650.1| transcription termination factor NusA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 375 Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 232/355 (65%), Gaps = 7/355 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + EK + +V++S + ++ A + GT S++ VE++ + G I ++ + E Sbjct: 9 DFMRALKQIETEKGLPLEVIISSIEAALVSAYKKYKGTNSNVEVELDSDNGIIKIYEVKE 68 Query: 68 VVEEVENYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ V N +IS++ A+ D + + G ++ + P DFGR+AVQ+A+QVI Q++++A Sbjct: 69 VVDTVRNPAFEISVEEAKSMGLDDAKE-GEMIKVEVSPRDFGRIAVQTARQVITQRLKDA 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER Y +F KVGEI++G V R E G +V +G+ D ++ R+E I E+ RPGDR K Sbjct: 128 ERQIIYNDFSGKVGEIVTGVVFRDEGGQALVRIGDKIDAMLPREERIPTESYRPGDRKKF 187 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DVR+ +GP+++LSR+HP + L +EVPEI G++ +K ++R+ G R+K+AV + Sbjct: 188 YVLDVRKTSKGPRIVLSRSHPGLLKSLLELEVPEIKEGVIDIKNIAREAGVRSKVAVTTL 247 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLD 302 D ++DPVGAC+G +G+R++A+ EL E+ID+++WS D ++ NAL PA V K+ LD Sbjct: 248 DPNVDPVGACIGTKGNRIKAISDELAGERIDVIIWSNDPIAYIKNALSPAKVVKIEPRLD 307 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ED + V V +QLSLAIG+ GQNVRLA++LTGW IDI E D + +D E Sbjct: 308 EDKA-VNVYVRPDQLSLAIGKGGQNVRLAAKLTGWKIDINVMEPDRLPTLQDLFE 361 >gi|283797337|ref|ZP_06346490.1| transcription termination factor NusA [Clostridium sp. M62/1] gi|291075009|gb|EFE12373.1| transcription termination factor NusA [Clostridium sp. M62/1] gi|295090489|emb|CBK76596.1| transcription termination factor NusA [Clostridium cf. saccharolyticum K10] Length = 408 Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 137/337 (40%), Positives = 216/337 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + + E +I ++V+ + +S+ A ++ +G +I+V I+ E D +++ E Sbjct: 4 ELFEALNVLEKENNISKEVLFEAIENSLLTACKNHFGRADNIKVYIDREKCDFAVYAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ Q+SL A+ DP G +V + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVENVEDPLTQVSLAEAKLMDPRHVYGDIVRVNINSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + + ++++G V+R +V +DLG D V++ E + E +P +K +I Sbjct: 124 TALFDHWYCREKDVVTGIVQRYVGHDVYIDLGKIDAVLKESEQVKGEEFKPTQHIKLFIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ ++GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D + Sbjct: 184 EVKNTKKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVASNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV +VV+EL EKIDI+ W + A + NAL PA V V DE+ Sbjct: 244 VDPVGACVGLNGARVNSVVSELNGEKIDIINWDDNPALLIENALSPAKVIFVAADEEARE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSE 340 >gi|294055327|ref|YP_003548985.1| transcription termination factor NusA [Coraliomargarita akajimensis DSM 45221] gi|293614660|gb|ADE54815.1| transcription termination factor NusA [Coraliomargarita akajimensis DSM 45221] Length = 416 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 157/415 (37%), Positives = 249/415 (60%), Gaps = 9/415 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK IDR +++ ++ +I AA+ DIRVEINP TG + + LE Sbjct: 4 EILSVLEYMEKEKGIDRADMITAISAAIASAAQKGVSAGQDIRVEINPRTGALKAWSRLE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +I ++ AR DP +IG V+ + P GR+A Q+A+Q I+Q++R+ E+ Sbjct: 64 VVDSVSDQALEIHIEKARQIDPDAEIGQVIEKEMDPAYLGRIAAQTARQAIMQRIRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DR Y +FKD VG+I++GTV+R E G++I+DLG ++ ++ E + E+ GD ++ + Sbjct: 124 DRIYDDFKDTVGDIVTGTVRRRERGDLIIDLGKAEAILPPRERVPGEDYSIGDSIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + + RGP ++LSR++ F+ +LF +EV EI +G V ++A++R+ G R K+AV S+D Sbjct: 184 KIEQTNRGPDIILSRSNLNFVRRLFELEVTEIADGTVTIEAMAREAGYRTKIAVHSADPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+ +V EL EKIDI+ D + ALRPA+ V L++ R Sbjct: 244 VDPVGACVGARGARVKTIVRELGGEKIDIIRHFTDPVQMLEEALRPAVPKNVRLNDVERR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + V ++ LS+AIGRRG N +L S+L GW +DI EE+++I F+E+ +Q I Sbjct: 304 MHFEVAEDDLSIAIGRRGFNAKLTSRLLGWKLDIGKEEKEAIG----FDEKIAKAIQGIT 359 Query: 368 V----DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V + IA LV G E V +++ GF A +I + Y + Sbjct: 360 VIPGIEPAIAQRLVGIGLISPEAFEGVAANDLVD-AGFTAAEADDIISKVAAYAQ 413 >gi|218513202|ref|ZP_03510042.1| transcription elongation factor NusA [Rhizobium etli 8C-3] Length = 213 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 127/181 (70%), Positives = 159/181 (87%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I L RLLEVV++ E+Y+ Q Sbjct: 20 KKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIRLQRLLEVVDKAEDYSTQ 79 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QKVREAERDRQ+ EFKD+V Sbjct: 80 IPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAERDRQFDEFKDRV 139 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+ Sbjct: 140 GEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQI 199 Query: 199 L 199 L Sbjct: 200 L 200 >gi|315302978|ref|ZP_07873697.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] gi|313628646|gb|EFR97060.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] Length = 312 Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 133/278 (47%), Positives = 193/278 (69%) Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAE Sbjct: 3 EAVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAE 62 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 63 RGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYL 122 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 123 TKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANE 182 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 183 EVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQ 242 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 243 ATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 280 >gi|227872001|ref|ZP_03990386.1| transcription elongation factor NusA [Oribacterium sinus F0268] gi|227842144|gb|EEJ52389.1| transcription elongation factor NusA [Oribacterium sinus F0268] Length = 390 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 140/339 (41%), Positives = 212/339 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL D + EK I + ++ + S+Q A ++ +G+ ++ V +NP+T S+ Sbjct: 4 ELRLALDMLEKEKKISKQALIEAIELSLQTACKNHFGSADNVHVSMNPDTAVFSVLADKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + + +ISL+ A + DPS +G VV P+ F R+A Q+AK VI+QK+RE ER Sbjct: 64 VVEKVGDKSTEISLEEAHEMDPSYTLGDVVQVPIDSKSFSRIAAQNAKGVIVQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ +I + V++ +I++LG DG + E I ENL PG R K Y+ Sbjct: 124 KNLFEEYYAMSKKIFTALVEKNTGRALIMNLGKVDGYLAEAEQIPGENLTPGQRAKVYVV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+++LSRTHP+ + KLF EV E+ GIV++K+++R+ GSR K+AV S++ Sbjct: 184 EVKDSPKGPKLMLSRTHPELVRKLFFEEVSELREGIVEIKSIAREAGSRTKMAVISNEED 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG+ G+RV +V ELR EKIDI+ + + A + N+L PA V V+ D D Sbjct: 244 VDAVGACVGLNGNRVNTIVEELRGEKIDIINYDENPAYLIENSLSPAKVIAVIADPDNKE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LT + IDI +E + Sbjct: 304 ALVIVPDNQLSLAIGKEGQNARLAAKLTNYKIDIKSESQ 342 >gi|225027047|ref|ZP_03716239.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353] gi|224955511|gb|EEG36720.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353] Length = 414 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 232/352 (65%), Gaps = 2/352 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK I+++V++ + DS+ A +G + ++V ++ +TGDIS++ Sbjct: 3 ELIDALNQLQKEKHIEKEVIMQAIEDSLVAACNRDFGKNAIVKVNMDRDTGDISVYVEKT 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL A+ +IG VV+ + P +FGR+A Q A+ VI+QK++E ER Sbjct: 63 VVEEVEDPATEISLADAKMIRFHYEIGDVVNIEVTPKNFGRIAAQHARSVIVQKIKEEER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 + F K +I++G V+R N+ V L + +D V+ E + E +P DR+K YI Sbjct: 123 RVVFEHFAHKEKDIVTGVVQRYNGKNISVSLDDKTDAVLTEKEQVKGEVFKPTDRIKLYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GP++L+SRTHP+ + +LF EV E+Y+G V++K+++R+ GSR K+AV S+D Sbjct: 183 VEVKDTNKGPKILVSRTHPELVKRLFEKEVAEVYDGTVEIKSIAREAGSRTKIAVASNDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ G+RV A+V++LR EKIDI+ W+ D A + NAL P+ V V +DE+ Sbjct: 243 NVDPVGACVGINGARVNAIVSDLRGEKIDIIEWNDDPAVLIENALSPSNVVSVDVDEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS-INRQKDFNE 357 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + DF E Sbjct: 303 SARVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQAAELAEELDFGE 354 >gi|295396943|ref|ZP_06807065.1| transcription termination factor NusA [Aerococcus viridans ATCC 11563] gi|294974796|gb|EFG50501.1| transcription termination factor NusA [Aerococcus viridans ATCC 11563] Length = 447 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 150/373 (40%), Positives = 233/373 (62%), Gaps = 4/373 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ +A+ EK I ++V+L + ++ A + Y ++ V + + G I ++ + E Sbjct: 4 EMLRAFEALEDEKGISKEVILEALEAALVSAYKRNYQQAQNVEVNFDVKKGSIEVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDLVMDSQLEVSLEDAHHLNSAYEIGDKIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D +I++G V+R + V V LG + VI + I E +P +RV+ Y+ Sbjct: 124 SIIYNEYIDYEDDILTGIVERQDRRYVYVSLGKIEAVIPPEGQIPNETFQPHERVQVYVE 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPEI++G V++KA++R+ G R+K+AV S+D++ Sbjct: 184 RVENTTKGPQVYVSRSHPSLLKRLFEQEVPEIFDGTVEIKAIAREAGDRSKVAVVSNDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG RGSRVQ +V EL+ E +DIV WS D ATF+ NAL PA V V Sbjct: 244 IDAVGTCVGPRGSRVQRIVDELKGENMDIVQWSDDMATFISNALNPADVLSVHFVPGETS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQAI 366 V+VP+ LSLAIG+RGQN RLA++LT IDI +E + ++ + +++ ER F + + Sbjct: 304 CVVVVPENHLSLAIGKRGQNARLAAKLTNHKIDIKSEADFEAYIQTEEYAER---FAEKV 360 Query: 367 NVDEIIAHLLVAE 379 VDE + +L + Sbjct: 361 LVDEDVDPILAGD 373 >gi|317495160|ref|ZP_07953530.1| transcription termination factor NusA [Gemella moribillum M424] gi|316914582|gb|EFV36058.1| transcription termination factor NusA [Gemella moribillum M424] Length = 343 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/340 (42%), Positives = 215/340 (63%), Gaps = 2/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPDDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ + GEI+SGTV R++ V V LG + ++ +E + EN P +K YI Sbjct: 124 EILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGENYVPQIPIKVYIA 183 Query: 188 DVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V RG P VL SR+HP+F+ +LF MEVPEIY+G V++K+VSR+ G R KLAVFS D Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEMEVPEIYSGTVEIKSVSREAGERTKLAVFSED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++++DE+ Sbjct: 244 KNVDPVGACVGNKGDRVNRIVDELNGEKIDIITWDADPVKFITNALAPAKVEEIIIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V ++QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 304 KIANVKVKEDQLSLAIGKKGQNVRLAARLTGWKIDIKAAE 343 >gi|188996513|ref|YP_001930764.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931580|gb|ACD66210.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 371 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/359 (41%), Positives = 224/359 (62%), Gaps = 19/359 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFR 64 ++L + + ++ EK+I DV+ + D I A + + +++ + E ++ + Sbjct: 3 VKLKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKVLI 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V VE+ T +I+L+ A++ DP+ D G V PL D GR+A+ AK+VI +KV + Sbjct: 63 KKKVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKVSK 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y EFKD G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDR+++ Sbjct: 123 VERDILYREFKDYEGKIITGTVRRFEGDDIIVDLGRIEAILPKEEQIPKEKYKIGDRIRA 182 Query: 185 YIYDVRRE------QRG-----------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + V +E ++G P V+LSRTHP F+ KL +EVPEI G ++VK Sbjct: 183 LVLKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEIEVK 242 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 AV+R+PG RAK+AV+S D +IDPVG VG++GSR+ V +EL EKID++ W D A F+ Sbjct: 243 AVAREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPAKFI 302 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 I AL PA K L RIE+ VP+E+LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 303 IRALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSEED 361 >gi|325282976|ref|YP_004255517.1| NusA antitermination factor [Deinococcus proteolyticus MRP] gi|324314785|gb|ADY25900.1| NusA antitermination factor [Deinococcus proteolyticus MRP] Length = 405 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/336 (41%), Positives = 218/336 (64%), Gaps = 4/336 (1%) Query: 10 LQIADA---VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 + ADA VA +++I+ ++ +S+ A + + V ++P++G++ + + Sbjct: 5 INFADALREVAQQRNINELQLIEAFEESLALAYKRNIDAEKRVEVHLDPQSGELEVLIIK 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE+VE+ QISL A + DP +++G + P+ F R+A+Q+AKQ + QK+RE E Sbjct: 65 EVVEKVEDENMQISLAEALELDPGVEVGMEMEFPVEREQFSRIALQAAKQTLTQKMRETE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+KD+ G++++ V R + GN V+LG + ++ E I E L PG+RVK Y Sbjct: 125 RNVVYNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAIMPPREQIPGEKLTPGNRVKIY 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +GP +L SR + + L E+PE+ NG+V++KAVSR+ G R+K+AVFS++ Sbjct: 185 LKEVRKTPKGPTILASRADERLLDYLLRQEIPEVQNGVVEIKAVSREAGQRSKVAVFSNN 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DP+GAC+G RG R+QAV EL E++D+++W D F+ NAL PA V + LDE+ Sbjct: 245 SNVDPIGACIGHRGGRIQAVTGELGRERVDVILWDEDQREFIRNALSPAKVGPIDLDEET 304 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 G V V +QLSLAIG+ GQNVRLA++LTG ID+ Sbjct: 305 GTATVTVTPDQLSLAIGKGGQNVRLAAKLTGQKIDL 340 >gi|81428862|ref|YP_395862.1| transcription elongation factor NusA [Lactobacillus sakei subsp. sakei 23K] gi|78610504|emb|CAI55555.1| Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) [Lactobacillus sakei subsp. sakei 23K] Length = 405 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/340 (40%), Positives = 212/340 (62%), Gaps = 1/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK + +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLGALDALEQEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++S + A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSYQDALEINKAYEVGDTIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ + + I E DR+K Y+ Sbjct: 124 SIIYNEYSQYENEIMQGIVERRDNKFIYVNLGKIEAVLSKQDQIPNEVYNAHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 KVENTTKGPQVFVSRTHPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 +DPVG CVG +G RVQ VV EL E +DIV W D + ++ NAL PA V V D + Sbjct: 244 VDPVGTCVGPKGQRVQLVVNELHGENMDIVKWEEDPSDYIANALNPAEVIAVQFNDGNEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 TCTVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESE 343 >gi|258539789|ref|YP_003174288.1| transcription elongation factor NusA [Lactobacillus rhamnosus Lc 705] gi|257151465|emb|CAR90437.1| Transcription elongation factor NusA [Lactobacillus rhamnosus Lc 705] Length = 404 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/341 (42%), Positives = 214/341 (62%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V DED Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESE 344 >gi|199597100|ref|ZP_03210532.1| transcription elongation factor NusA [Lactobacillus rhamnosus HN001] gi|258508610|ref|YP_003171361.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG] gi|199591904|gb|EDY99978.1| transcription elongation factor NusA [Lactobacillus rhamnosus HN001] gi|257148537|emb|CAR87510.1| Transcription elongation factor NusA [Lactobacillus rhamnosus GG] gi|259649917|dbj|BAI42079.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG] Length = 402 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/341 (42%), Positives = 214/341 (62%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V DED Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESE 344 >gi|116495058|ref|YP_806792.1| transcription elongation factor NusA [Lactobacillus casei ATCC 334] gi|191638561|ref|YP_001987727.1| transcription elongation factor NusA [Lactobacillus casei BL23] gi|239631347|ref|ZP_04674378.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066621|ref|YP_003788644.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|116105208|gb|ABJ70350.1| Transcription elongation factor [Lactobacillus casei ATCC 334] gi|190712863|emb|CAQ66869.1| Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) [Lactobacillus casei BL23] gi|239525812|gb|EEQ64813.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439028|gb|ADK18794.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327382599|gb|AEA54075.1| N utilization substance protein A [Lactobacillus casei LC2W] gi|327385797|gb|AEA57271.1| N utilization substance protein A [Lactobacillus casei BD-II] Length = 417 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/341 (41%), Positives = 213/341 (62%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG- 306 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEAND 303 Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESE 344 >gi|254556874|ref|YP_003063291.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1] gi|300768187|ref|ZP_07078092.1| transcription termination factor NusA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180815|ref|YP_003924943.1| transcription elongation factor NusA [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045801|gb|ACT62594.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1] gi|300494251|gb|EFK29414.1| transcription termination factor NusA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046306|gb|ADN98849.1| transcription elongation factor NusA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 405 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/342 (42%), Positives = 218/342 (63%), Gaps = 1/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + E Sbjct: 4 ELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y+ Sbjct: 124 GIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ + Sbjct: 184 KVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R Sbjct: 244 VDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTDDQAVFIANALNPAEVLDVIFDPENER 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S Sbjct: 304 GCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAS 345 >gi|87309244|ref|ZP_01091380.1| transcription elongation factor NusA [Blastopirellula marina DSM 3645] gi|87287883|gb|EAQ79781.1| transcription elongation factor NusA [Blastopirellula marina DSM 3645] Length = 425 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/398 (38%), Positives = 239/398 (60%), Gaps = 37/398 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L+I DA+ +K+ID++VV + ++ A R + S++ + I+ E G IS Sbjct: 2 NPTEVLRIVDAIHRDKNIDKEVVFQAIESALVSATRKYHSEESEVVIHIDREDGSIS--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVR 123 G + +P+ P + GR+ Q+AKQVIIQK+R Sbjct: 59 -----------------------------GHIDGEPVDPEEAVGRIGAQTAKQVIIQKIR 89 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD + E+ + VG++++GTV R E G IV LGN + ++ R E I E+ DRV+ Sbjct: 90 EAERDSLHDEYDEMVGQMVNGTVHRAEGGAAIVALGNVEAILPRSEQIPGESFHANDRVR 149 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + +VR++ +V+LSR + +F+ +LF E+PEI + ++++K +SR+PG R+K+AV S Sbjct: 150 AIVLEVRKQGSRVKVVLSRANKRFVQRLFEQEIPEITDEVIEIKNISREPGYRSKVAVDS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD +D VGACVG+RG+R++ +V EL E+IDIV W+ D T + NAL+PA V +V+L + Sbjct: 210 SDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWTDDPETLIPNALQPAEVEEVILCK 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+ EE ++ F Sbjct: 270 MMGRAIVLVREDQLSLAIGRRGQNVRLASKLCGWDIEIMLREE----LEEQIERAVTAFT 325 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 V + +A LV EGF ++L+ ++ + ++ F Sbjct: 326 GIDGVTDSVAEQLVGEGFLSYDDLSVIESDALMAMGEF 363 >gi|226226960|ref|YP_002761066.1| transcription elongation protein NusA [Gemmatimonas aurantiaca T-27] gi|226090151|dbj|BAH38596.1| transcription elongation protein NusA [Gemmatimonas aurantiaca T-27] Length = 438 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 147/330 (44%), Positives = 212/330 (64%), Gaps = 3/330 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K I R+ + ++ D I A +G VEI+ G+I + L VV+EV + + ++ Sbjct: 18 KQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIVLLKTVVDEVTDESREV 77 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 +++ AR DP +G V+ P+ M+FGR AVQ+AKQ IIQ+VRE ER R EF +VG Sbjct: 78 TVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVREGERTRIRDEFAGRVG 137 Query: 140 EIISGTVKRVEYGNVIVDLGN---SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +++SG V+++E G ++V L ++ +I E RE+ G+ V++ + V +GP Sbjct: 138 DLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGEPVRAVLKRVEDTPKGP 197 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSR+ F+ LF +EVPEI GIV++KA +R+ GSR K+AV S D ++DPVGACVG Sbjct: 198 RLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIAVTSRDEAVDPVGACVG 257 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++G+RVQAVV EL E+IDIV WSPD F AL PA V +V D I+ +V ++Q Sbjct: 258 LKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVFSDAASRTIQAVVDEDQ 317 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIGR GQNVRLAS+LTGW ID+ + E Sbjct: 318 LSLAIGRNGQNVRLASELTGWKIDLYSSRE 347 >gi|28378676|ref|NP_785568.1| transcription elongation factor NusA [Lactobacillus plantarum WCFS1] gi|28271512|emb|CAD64417.1| transcription termination-antitermination factor NusA [Lactobacillus plantarum WCFS1] Length = 405 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 145/342 (42%), Positives = 218/342 (63%), Gaps = 1/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + E Sbjct: 4 ELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y+ Sbjct: 124 GIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ + Sbjct: 184 KVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R Sbjct: 244 VDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTYDQAVFIANALNPAEVLDVIFDPENER 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S Sbjct: 304 GCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAS 345 >gi|297623578|ref|YP_003705012.1| transcription termination factor NusA [Truepera radiovictrix DSM 17093] gi|297164758|gb|ADI14469.1| transcription termination factor NusA [Truepera radiovictrix DSM 17093] Length = 397 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 219/336 (65%), Gaps = 1/336 (0%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 + +A+E+++D++ +L+ +++++A I V ++PE+G+I + + VVE VE Sbjct: 10 NQLAHERNLDKEQLLASFEEALEQAYERNVEPGKQIEVHVDPESGEIDVLVVKRVVETVE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + ++SL+ AR+ DP++++G + P+ P F R+AVQ+ KQVI QK+REAER + E Sbjct: 70 DPGLEMSLEEARELDPTVEVGMEMELPVDPERFTRIAVQTTKQVITQKIREAERALVFNE 129 Query: 134 FKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 +KD+ G++I+ V R + NV VDLG + ++ E I E G R+K ++ V Sbjct: 130 YKDRAGDVITAVVSRTDNKRNVFVDLGRGEAIMPPKEQIPGERYMVGMRLKVFVMKVELG 189 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP +L+SR P+ + L E+PEI + V++KAV+R+ G R+K+AV S + ++DP+G Sbjct: 190 NRGPSILVSRAAPELLEYLMRQEIPEIADDTVEIKAVAREAGQRSKVAVVSRNPNVDPIG 249 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 AC+G RG+R+QAV EL+ E++DI++W P F+ NAL PA V + ++ + G +V V Sbjct: 250 ACIGHRGARIQAVTGELQRERVDIILWDPSPREFIRNALSPAKVGTIEVNSETGEAKVTV 309 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +QLSLAIG+ GQNVRLA++LTG+ ID++ E S Sbjct: 310 SNDQLSLAIGKGGQNVRLAAKLTGFKIDLVASEHIS 345 >gi|229552419|ref|ZP_04441144.1| transcription termination factor NusA [Lactobacillus rhamnosus LMS2-1] gi|229314156|gb|EEN80129.1| transcription termination factor NusA [Lactobacillus rhamnosus LMS2-1] Length = 404 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/341 (41%), Positives = 214/341 (62%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ V+ +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVKFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V DED Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESE 344 >gi|182414628|ref|YP_001819694.1| NusA antitermination factor [Opitutus terrae PB90-1] gi|177841842|gb|ACB76094.1| NusA antitermination factor [Opitutus terrae PB90-1] Length = 408 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 144/405 (35%), Positives = 249/405 (61%), Gaps = 4/405 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK I R +++ +A++++ AA+ + ++++EIN + G + + LL+ Sbjct: 4 EILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWCLLK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V N +I ++ A+ P IG ++ + P GR+A Q+A+Q ++Q++R+ E+ Sbjct: 64 VVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DR + +FKD+VG I++GTV+R E ++ +DLG ++ V+ E + E +PG+R++ + Sbjct: 124 DRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGKAEAVMPAKEQVPGEEYQPGERIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 ++ RGP+++L+R P+F+ +LF +EV EI +G V+++A +R+PG R K+AV S+D Sbjct: 184 NIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVISTDPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+ +V EL EKIDI+ + +I A++PA+ ++ LDE R Sbjct: 244 VDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDEKNHR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 I + V + L++AIGR+GQN RL S+L GW +DI EE ++ N ++A Sbjct: 304 ILLKVATDDLAIAIGRKGQNARLTSRLIGWRLDI--EEFRAVGDDPRGNA-IASLVKAFA 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +D +A LV G V+ +++ GF E A +I GR Sbjct: 361 LDATVAGRLVDMGINSPAAFEGVEANDLVD-AGFTEAEATDIIGR 404 >gi|297520389|ref|ZP_06938775.1| transcription elongation factor NusA [Escherichia coli OP50] Length = 323 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 135/309 (43%), Positives = 203/309 (65%), Gaps = 3/309 (0%) Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGS Sbjct: 1 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 60 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA Sbjct: 61 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 120 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + Sbjct: 121 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 180 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 181 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 240 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---G 472 L I ++ + + +++L ++ G+D + L G+ T+EDLA +DDL G Sbjct: 241 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEG 300 Query: 473 WSENKGGNI 481 ++ K G + Sbjct: 301 LTDEKAGAL 309 >gi|327542469|gb|EGF28948.1| transcription elongation factor NusA [Rhodopirellula baltica WH47] Length = 498 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 154/402 (38%), Positives = 236/402 (58%), Gaps = 41/402 (10%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I+ Sbjct: 2 NPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIA--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + +PL GR+ Q+AKQVIIQKVRE Sbjct: 59 -----------------------------ATLAGEPLGDDQIGRIGAQTAKQVIIQKVRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV++ Sbjct: 90 AERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVRA 149 Query: 185 YIYDVRREQRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV S Sbjct: 150 IVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVSS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L + Sbjct: 210 EDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLCD 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--EEEDSINRQKDFNERTQF 361 +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E E+ I R Sbjct: 270 MIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEEQIERA------VGG 323 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 F Q + E IA LV +G+ ++L+ ++ + G E Sbjct: 324 FSQIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSE 365 >gi|32473747|ref|NP_866741.1| transcription elongation factor NusA [Rhodopirellula baltica SH 1] gi|32444283|emb|CAD74281.1| N utilization substance protein A [Rhodopirellula baltica SH 1] Length = 498 Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 154/402 (38%), Positives = 236/402 (58%), Gaps = 41/402 (10%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I+ Sbjct: 2 NPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIA--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + +PL GR+ Q+AKQVIIQKVRE Sbjct: 59 -----------------------------ATLAGEPLGDDQIGRIGAQTAKQVIIQKVRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV++ Sbjct: 90 AERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVRA 149 Query: 185 YIYDVRREQRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV S Sbjct: 150 IVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVSS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L + Sbjct: 210 EDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLCD 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--EEEDSINRQKDFNERTQF 361 +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E E+ I R Sbjct: 270 MIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEEQIERA------VGG 323 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 F Q + E IA LV +G+ ++L+ ++ + G E Sbjct: 324 FSQIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSE 365 >gi|189485237|ref|YP_001956178.1| transcription antitermination factor NusA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287196|dbj|BAG13717.1| transcription antitermination factor NusA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 418 Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 237/383 (61%), Gaps = 1/383 (0%) Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDR 87 L V+ +++ A + G ++ ++NPE G+++ + VV++V N +I ++ A+ Sbjct: 26 LVVIENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKVVVKDVVNPLLEICVQDAKKF 85 Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 D S++IG V PL DF R+A Q+AKQVI+QK+RE+ERD + E K+K+G+I +G + Sbjct: 86 DQSVEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESERDSLFDEMKEKIGQIANGAIY 145 Query: 148 RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 R+ N+IVDLG ++ ++ E + +E G +K+ I V + +G V+LSRT + Sbjct: 146 RITNRNLIVDLGKTEAILPSSEQVFKEKFSVGQYIKAVIIKVEKSVKGSGVVLSRTSIEL 205 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 + +LF +EVPEIY IV++ V R+PG R K+ V S + +DPVGACVG++G+RV+ ++ Sbjct: 206 VKRLFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNPKVDPVGACVGVKGARVKPIID 265 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQ 326 ELR E+ID+V +S D A ++ +A+ PA IV+ + E+ + EV+V + L LAIG+ G Sbjct: 266 ELRGERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEEKKAEVLVTDDMLFLAIGKNGH 325 Query: 327 NVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 NVRLA++LTGW ID+ +E + + ++ + F + E I +LV G DVE+ Sbjct: 326 NVRLAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKLEGFSERIIKMLVKAGITDVEK 385 Query: 387 LACVKISEIASIEGFDEETAVEI 409 L+ + + ++ G +TA +I Sbjct: 386 LSLLTTEYLITLPGIGHKTAEKI 408 >gi|227513181|ref|ZP_03943230.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC 11577] gi|227083562|gb|EEI18874.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC 11577] Length = 440 Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 223/365 (61%), Gaps = 7/365 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+ Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ ++D R Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDNDR 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF-NERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E K+F ER Q QA Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETE-----AKEFLAERKQKAQQA 358 Query: 366 INVDE 370 N DE Sbjct: 359 ENEDE 363 >gi|227524396|ref|ZP_03954445.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC 8290] gi|227088627|gb|EEI23939.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC 8290] Length = 440 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 223/365 (61%), Gaps = 7/365 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+ Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ ++D R Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDNDR 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF-NERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E K+F ER Q QA Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETE-----AKEFLAERKQKAQQA 358 Query: 366 INVDE 370 N DE Sbjct: 359 ENEDE 363 >gi|255027177|ref|ZP_05299163.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-003] Length = 301 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 129/268 (48%), Positives = 187/268 (69%) Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D Sbjct: 2 LEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFID 61 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 + +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ V + +GP Sbjct: 62 REDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGP 121 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 Q+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ +DPVGACVG Sbjct: 122 QIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEEVDPVGACVG 181 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E VIVP Q Sbjct: 182 PKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQ 241 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 LSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 242 LSLAIGKRGQNARLAAKLTGWKIDIKSE 269 >gi|227534931|ref|ZP_03964980.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187687|gb|EEI67754.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/341 (41%), Positives = 212/341 (62%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG- 306 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEAND 303 Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQN RLA++LTG+ I I E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIHIKPESE 344 >gi|167772658|ref|ZP_02444711.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM 17241] gi|167665136|gb|EDS09266.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM 17241] Length = 358 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 145/346 (41%), Positives = 214/346 (61%), Gaps = 3/346 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ + E + + EK I R ++ +A +I A R G D V+INP+TG Sbjct: 7 MNTSNTEFFEALALMEKEKGIPRSLLAEKIATAIGNAIRRDMGASEDSVVDINPDTGRFY 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + VV+++ + +I + A D +G +V PL FGR+A Q+AK VI Q Sbjct: 67 VAMRKTVVDDLLDPAQEILPEEAVKYDSGATLGDIVEIPLDTKQFGRIAAQTAKHVIRQG 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPG 179 +REAER + + EF + +I++ TV R + GNV ++LG S+ V+ + E + E G Sbjct: 127 IREAERGQLFAEFSSRQHDIVTATVLRTDQVRGNVTLELGKSEAVLPKGEQVPGEEYADG 186 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K Y+ DV ++GP++++SRTHP + +LF MEVPEI++G ++VK++SR+ GSR K+ Sbjct: 187 ARIKVYVVDVVNGEKGPRIMISRTHPGLVKRLFEMEVPEIFDGTIEVKSISREAGSRTKI 246 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+D ++DPVGAC+G +G RV A+V EL EKID+V +S D A F+ AL PA V V Sbjct: 247 AVWSNDENVDPVGACIGPKGQRVSAIVEELGGEKIDVVRYSADPAEFIAAALSPADVVSV 306 Query: 300 VLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D D + V VP QLSLAIG +GQN RLA++LTGW IDI E Sbjct: 307 EVDPDGAKSCRVSVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPE 352 >gi|227510252|ref|ZP_03940301.1| transcription elongation factor NusA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189904|gb|EEI69971.1| transcription elongation factor NusA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 444 Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 222/365 (60%), Gaps = 7/365 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+ Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D+D R Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFDDDNDR 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF-NERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E K+F ER Q Q Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETE-----AKEFLAERKQKAQQV 358 Query: 366 INVDE 370 N DE Sbjct: 359 ENEDE 363 >gi|167746758|ref|ZP_02418885.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662] gi|317471572|ref|ZP_07930918.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA] gi|167653718|gb|EDR97847.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662] gi|316900951|gb|EFV22919.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA] Length = 391 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 145/344 (42%), Positives = 222/344 (64%), Gaps = 5/344 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK ID+DV++ + +S+ A + +G ++ V ++ ETGDI ++ E Sbjct: 3 ELIDALNQLEKEKHIDKDVIMEAIENSLVAACKRDFGNADNVVVNMDRETGDIVVYAEKE 62 Query: 68 VVEEVE----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE + + QISL A+ DP ++G +V + P DFGR+A A+ VI+QK++ Sbjct: 63 VVETADGEDFDPALQISLAKAKAMDPKYELGDIVRVEITPKDFGRIAAMHARSVIVQKIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 E ER + F K +I++G V+R NV V L + +D ++ + E I E +P +R+ Sbjct: 123 EEERRVVFDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFQPTERI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K YI +V+ RGP++L+SRTHP + +LF EV EI +GIV++K + R+ GSR KLAV+ Sbjct: 183 KLYIVEVKDTNRGPRILVSRTHPDLVKRLFEKEVAEIQDGIVEIKNIVREAGSRTKLAVW 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D ++DPVGACVGM G+RV A+V +L+ EKIDI+ W+ D ++ NAL P+ V V +D Sbjct: 243 SNDPNVDPVGACVGMNGARVNAIVNDLKGEKIDIINWNEDPCVYIENALSPSKVVSVSVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 303 VEEKSAQVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 346 >gi|270308254|ref|YP_003330312.1| transcription elongation factor [Dehalococcoides sp. VS] gi|270154146|gb|ACZ61984.1| transcription elongation factor [Dehalococcoides sp. VS] Length = 487 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 137/327 (41%), Positives = 211/327 (64%), Gaps = 1/327 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++ EK++ ++VVL+ + ++ A R + +I V+I+P TG + + +VVE+V + Sbjct: 12 LSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDPLTGKVKVMAEKQVVEKVID 71 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ L A+ + IG ++ P D GR+A Q+AKQVI+Q++ EAE + E+ Sbjct: 72 SRQEMRLLEAKRQKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHEAENTAIFDEY 131 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K G+ + G V+R+E + VD+G + ++ E E R G R+K Y+ DV + + Sbjct: 132 ASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKVYVVDVAKTAK 191 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + IDPVG C Sbjct: 192 GPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGALQPGIDPVGCC 251 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG+RG R+Q +V+EL EKID+V W + ATF+ N+L PA VTKV+L+E V++P Sbjct: 252 VGLRGIRIQNIVSELNGEKIDVVAWDNEIATFIANSLSPAQVTKVILNEAEKSAIVVIPD 311 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 QLSL IG+ GQNVRLA +LTGW IDI Sbjct: 312 RQLSLGIGKEGQNVRLAVKLTGWRIDI 338 >gi|149178853|ref|ZP_01857433.1| transcription elongation factor NusA [Planctomyces maris DSM 8797] gi|148842328|gb|EDL56711.1| transcription elongation factor NusA [Planctomyces maris DSM 8797] Length = 494 Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 158/402 (39%), Positives = 248/402 (61%), Gaps = 32/402 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+I DA+ +KSID+++V + +I AAR +G ++ V+I+ +TG+ ++ Sbjct: 5 EVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTGEPTVL---- 60 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 C K+ +D I G + GRVA Q+AKQV+IQK+REAER Sbjct: 61 ---------CD-GDKLGKD------ILGEI--------LGRVAAQTAKQVMIQKIREAER 96 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + E+ + + +SGTV RVE G V+V+LG +G++ R E I E+ R DRV++ + Sbjct: 97 DTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGKIEGILPRGEQIPGESFRVNDRVRAVVL 156 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVR+ +V+LSRTHP + +LF +E+PE+ + I+ V++++R+ G R+K+AV DSS Sbjct: 157 DVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSCIDSS 216 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVGMRG+R++ +V EL E+IDIV W+ V N+L+PA V V+L +GR Sbjct: 217 IDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCPMLGR 276 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + V+V +QL LAIGR+GQNVRLAS+L GW I+++T+ E ++ Q ++ + F Sbjct: 277 VIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMTQTE--LDEQ--LDKTVEAFSSIPG 332 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 V E +A LV++GF +L+ ++ ++A + G E +I Sbjct: 333 VSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQI 374 >gi|168214478|ref|ZP_02640103.1| N utilization substance protein A [Clostridium perfringens CPE str. F4969] gi|170714047|gb|EDT26229.1| N utilization substance protein A [Clostridium perfringens CPE str. F4969] Length = 366 Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 143/338 (42%), Positives = 219/338 (64%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 E L + EK I + +L + D+I A + + T +++V+ + ++G+I ++ Sbjct: 4 EFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+++ Sbjct: 64 AQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++++ Sbjct: 124 ESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEKLQ 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V DE Sbjct: 244 NDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSSTPSEYIENALSPAKVISVEADE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +VIV QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 ETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|110803140|ref|YP_698976.1| transcription elongation factor NusA [Clostridium perfringens SM101] gi|110683641|gb|ABG87011.1| N utilization substance protein A [Clostridium perfringens SM101] Length = 366 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 143/338 (42%), Positives = 219/338 (64%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 E L + EK I + +L + D+I A + + T +++V+ + ++G+I ++ Sbjct: 4 EFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+++ Sbjct: 64 AQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++++ Sbjct: 124 ESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEKLQ 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V DE Sbjct: 244 NDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVVSVEADE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +VIV QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 ETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|18310671|ref|NP_562605.1| transcription elongation factor NusA [Clostridium perfringens str. 13] gi|110800366|ref|YP_696376.1| transcription elongation factor NusA [Clostridium perfringens ATCC 13124] gi|168211423|ref|ZP_02637048.1| N utilization substance protein A [Clostridium perfringens B str. ATCC 3626] gi|168216976|ref|ZP_02642601.1| N utilization substance protein A [Clostridium perfringens NCTC 8239] gi|169342667|ref|ZP_02863708.1| N utilization substance protein A [Clostridium perfringens C str. JGS1495] gi|18145352|dbj|BAB81395.1| probable transcriptional terminator [Clostridium perfringens str. 13] gi|110675013|gb|ABG84000.1| N utilization substance protein A [Clostridium perfringens ATCC 13124] gi|169299173|gb|EDS81243.1| N utilization substance protein A [Clostridium perfringens C str. JGS1495] gi|170710583|gb|EDT22765.1| N utilization substance protein A [Clostridium perfringens B str. ATCC 3626] gi|182380937|gb|EDT78416.1| N utilization substance protein A [Clostridium perfringens NCTC 8239] Length = 366 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 143/338 (42%), Positives = 219/338 (64%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 E L + EK I + +L + D+I A + + T +++V+ + ++G+I ++ Sbjct: 4 EFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+++ Sbjct: 64 AQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++++ Sbjct: 124 ESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEKLQ 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V DE Sbjct: 244 NDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEADE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +VIV QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 ETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|304384867|ref|ZP_07367213.1| transcription termination factor NusA [Pediococcus acidilactici DSM 20284] gi|304329061|gb|EFL96281.1| transcription termination factor NusA [Pediococcus acidilactici DSM 20284] Length = 388 Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 137/327 (41%), Positives = 205/327 (62%), Gaps = 1/327 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I + VV+ + ++ A + YG ++ VE N GDI ++ + +VVEEVE+ Q Sbjct: 15 EKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAVKKVVEEVEDDQLQ 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER+ Y ++ + Sbjct: 75 VSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAEREVIYEKYSQYL 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E+++G V R + V VDLG + V+ + + I E P D +K Y+ V RGPQ+ Sbjct: 135 DEMVTGEVARRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVYVTKVEYSGRGPQI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++ ID VG CVG R Sbjct: 195 FVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNNPDIDAVGTCVGPR 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVPKEQL 317 G R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+ VIVP QL Sbjct: 255 GQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEEENSCIVIVPDYQL 314 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITE 344 SLAIG+RGQN RLA++LT + IDI +E Sbjct: 315 SLAIGKRGQNARLAAKLTNYKIDIKSE 341 >gi|332653588|ref|ZP_08419333.1| transcription termination factor NusA [Ruminococcaceae bacterium D16] gi|332518734|gb|EGJ48337.1| transcription termination factor NusA [Ruminococcaceae bacterium D16] Length = 392 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 147/350 (42%), Positives = 222/350 (63%), Gaps = 10/350 (2%) Query: 2 VSANRLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPET 57 V++N L+ + A+A EK I ++ + ++ A R + G ++ V+ NPET Sbjct: 9 VNSNELDGQEFFAAIAQIEQEKGIKPGYMMEKITQALVSAYRRDHEGVGDNLIVDANPET 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + +F +VVE V+N +ISL+ A+ P ++G VV + P FGR+A Q+A+QV Sbjct: 69 NTVRMFLKKDVVEVVDNPNTEISLQEAKAALPRAELGDVVRIEVKPKSFGRIAAQTARQV 128 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL----GN--SDGVIRRDETI 171 IIQ +REAE+ Y EF K E+++G V R++ N V L G+ +D + +E + Sbjct: 129 IIQGIREAEQGMVYDEFSSKEHELLTGVVTRIDPRNGAVTLRISSGSEFTDAYLGANEQV 188 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E+ G R+K Y+ +VR+ +GPQV++SRTHP + +LF +EVPEIY+G V++++++R Sbjct: 189 KGESYVEGQRLKVYMVEVRKATKGPQVIISRTHPGLVKRLFELEVPEIYDGTVEIRSIAR 248 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + GSR KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A ++ AL Sbjct: 249 EAGSRTKLAVWSADPNVDPIGACVGPRGQRVNTIVEELKGEKMDIIKYSDDPAEYIAAAL 308 Query: 292 RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 PA V V D V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 SPADVVSVEPLPDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGWKIDI 358 >gi|73748752|ref|YP_307991.1| transcription elongation factor NusA [Dehalococcoides sp. CBDB1] gi|147669518|ref|YP_001214336.1| transcription elongation factor NusA [Dehalococcoides sp. BAV1] gi|289432778|ref|YP_003462651.1| transcription termination factor NusA [Dehalococcoides sp. GT] gi|73660468|emb|CAI83075.1| N utilization substance protein A [Dehalococcoides sp. CBDB1] gi|146270466|gb|ABQ17458.1| NusA antitermination factor [Dehalococcoides sp. BAV1] gi|288946498|gb|ADC74195.1| transcription termination factor NusA [Dehalococcoides sp. GT] Length = 491 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 137/337 (40%), Positives = 216/337 (64%), Gaps = 1/337 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + + +VVE+V + Sbjct: 12 LSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDQLTGKVKVMAEKQVVEKVID 71 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ EAE + E+ Sbjct: 72 SRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHEAENTAIFDEY 131 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K G+ + G V+R+E + VD+G + ++ +E E R G R+K Y+ DV + + Sbjct: 132 ASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPANEQAYGERYRAGQRIKVYVVDVAKTAK 191 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + IDPVG C Sbjct: 192 GPSVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGALQPGIDPVGCC 251 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG+RG R+Q +V+EL EKID+V WS + A+F+ N+L PA VTKV+L+E V++P Sbjct: 252 VGLRGIRIQNIVSELNGEKIDVVAWSSEIASFIANSLSPAQVTKVILNEAERSAIVVIPD 311 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 QLSL IG+ GQNVRLA +LTGW IDI + ++ + R Sbjct: 312 RQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEDVER 348 >gi|163815206|ref|ZP_02206583.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759] gi|158449401|gb|EDP26396.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759] Length = 398 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 137/335 (40%), Positives = 219/335 (65%), Gaps = 1/335 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + E++I +DV+L + S++ A + + T +I V ++ ETG+ ++ E Sbjct: 3 EIIEALNQLEKERNISKDVLLEAIERSLKTACKKDFNTDENITVSLDRETGECHVYAAKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN + QISL A+ + +IG V+ + +FGR+A Q A+ VI+Q + E ER Sbjct: 63 VVDEVENPSFQISLSQAKMLNRRYEIGDTVNVEITTKNFGRIAAQRARNVIVQAINENER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 Y F K ++++G V+R +V V L + ++ +++ E I E GDR+K Y+ Sbjct: 123 AAIYDHFHMKEKDVVTGIVERQVGDSVNVSLDDKTEALLKPSEMIEGETYERGDRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GP++++SRTHP+ + +LF EV EI +G+V++K+ R+ GSR+K+AV+S+D Sbjct: 183 TEVKKTNKGPKIVVSRTHPELVKRLFEKEVTEIADGVVEIKSFCREAGSRSKIAVWSNDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++D VGACVG+ G RV AVV +L EKIDI+ WS + A F+ NAL P+ V V +D D Sbjct: 243 NVDAVGACVGVNGDRVNAVVADLNGEKIDIIPWSENPAEFIYNALSPSDVEDVSVDLDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG++GQN RLA++LTG+ IDI Sbjct: 303 SAFVVVPDTQLSLAIGKKGQNARLAAKLTGYKIDI 337 >gi|229829176|ref|ZP_04455245.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM 14600] gi|229792339|gb|EEP28453.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM 14600] Length = 406 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 136/340 (40%), Positives = 214/340 (62%), Gaps = 3/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG---TMSDIRVEINPETGDISLFR 64 +LL+ DA+ E+ I ++ +L + S+ A + Y +++R ++ ETGD +F Sbjct: 5 DLLEALDALETERGISKEHILEAIEKSLVAACKVTYKFSDNATNLRAVVDRETGDFHVFV 64 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+EV N ++SL+ A D D S+++G + L DF R+A +AK ++ Q + E Sbjct: 65 KKTVVDEVTNPQSEMSLEEAHDIDGSLNVGDTAEEELQSHDFSRIAASTAKNIMKQMILE 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER E+ +I++G V+R N+ V+LG D + E + E+ DR++ Sbjct: 125 EERKILLDEYIKIEHDIVTGVVQRFIGRNISVNLGKVDAFLPESEQVKGEHYHQSDRIRV 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ +GIV++KA++R+ GSR K+AV+S+ Sbjct: 185 YVLEVKDAAKGPRIRVSRTHPELVKRLFEEEVTEVKDGIVEIKAIAREAGSRTKMAVWSN 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+GACVG+ GSRV A+V EL +EKIDI+ W+ + A + NAL PA V V+ DED Sbjct: 245 DPDVDPLGACVGVNGSRVNAIVNELHNEKIDIINWNENPAMLIENALSPAKVIAVLADED 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E Sbjct: 305 AREAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSE 344 >gi|270290314|ref|ZP_06196539.1| transcription termination factor NusA [Pediococcus acidilactici 7_4] gi|270281095|gb|EFA26928.1| transcription termination factor NusA [Pediococcus acidilactici 7_4] Length = 388 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 137/327 (41%), Positives = 205/327 (62%), Gaps = 1/327 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I + VV+ + ++ A + YG ++ VE N GDI ++ + +VVEEVE+ Q Sbjct: 15 EKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAVKKVVEEVEDDQLQ 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER+ Y ++ + Sbjct: 75 VSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAEREVIYEKYSQYL 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E+++G V R + V VDLG + V+ + + I E P D +K Y+ V RGPQ+ Sbjct: 135 DEMVTGEVVRRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVYVTKVEYSGRGPQI 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++ ID VG CVG R Sbjct: 195 FVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNNPDIDAVGTCVGPR 254 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVPKEQL 317 G R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+ VIVP QL Sbjct: 255 GQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEEENSCIVIVPDYQL 314 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITE 344 SLAIG+RGQN RLA++LT + IDI +E Sbjct: 315 SLAIGKRGQNARLAAKLTNYKIDIKSE 341 >gi|313906214|ref|ZP_07839560.1| transcription termination factor NusA [Eubacterium cellulosolvens 6] gi|313468944|gb|EFR64300.1| transcription termination factor NusA [Eubacterium cellulosolvens 6] Length = 415 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 212/337 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK+I ++ +L + S+ +A ++ Y ++ V I+P+T D ++ Sbjct: 4 ELLDALNILEKEKNISKETLLEAIQQSLLQAYKNQYDRSDNVVVSIDPDTCDFHIYAEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ +I+ A D + IG V + +FGR+A +AK VI+QK+RE ER Sbjct: 64 VVETVEDPVTEIAQIDAFKYDSTAQIGETVRVEIQSKNFGRIATTNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+++K E+++GTV+R NV V+LG D ++ E + E R +RVK Y+ Sbjct: 124 RALFNEYREKEHEVMTGTVQRYVGQNVNVNLGKVDALLTAKEMVKGEKFRLTERVKIYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR +GP++L+SRTHP+ + +LF EV EI GI+++K+++R+ GSR K+AV+S+D Sbjct: 184 EVRDTPKGPKILVSRTHPELVKRLFEEEVAEIREGIIEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVG+ GSRV A+V EL EKID++ W + A + +AL PA V V+ D D Sbjct: 244 VDAVGACVGVNGSRVNAIVDELDGEKIDVIEWDENEAVLIEHALSPAKVISVLADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+ GQN RLA+ LT + IDI +E Sbjct: 304 ALVIVPDYQLSLAIGKEGQNARLAAHLTQYKIDIKSE 340 >gi|302670327|ref|YP_003830287.1| transcription termination factor NusA [Butyrivibrio proteoclasticus B316] gi|302394800|gb|ADL33705.1| transcription termination factor NusA [Butyrivibrio proteoclasticus B316] Length = 384 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/342 (39%), Positives = 215/342 (62%), Gaps = 3/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ D + EK+I +D + + +S+ A ++ +G +IRVE++ D + E Sbjct: 4 ELMDALDLLEKEKNISKDSLFDAIENSLITACKNNFGKADNIRVEVDRNNCDFKCYADKE 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE +V + +ISL A+ +G +V+ L +FGR+A Q+AK VI+QK+RE Sbjct: 64 VVETADDVMDPQIEISLDDAKKISKKAKVGDIVAVSLNSKEFGRIATQNAKNVILQKIRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER Y E+ +K +I++G V+R N+ ++LG +D ++ +E + E RP R++ Sbjct: 124 EERGAIYNEYFEKEHDIVTGVVQRFIGKNISINLGRADAILNENEQVKGEVYRPTQRLRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++L+SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S+ Sbjct: 184 YVLEVKNGSKGPRILVSRTHPDLVKRLFEQEVAEIQDGTVEIKSIAREAGSRTKIAVYST 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++D VGACVG+ G+RV +V EL EKID++ W + + NAL PA + V D D Sbjct: 244 NPNVDAVGACVGVNGARVNLIVDELGGEKIDVINWDENPGNLIQNALSPAKIVAVFADPD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 EKSAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQ 345 >gi|170017453|ref|YP_001728372.1| transcription elongation factor [Leuconostoc citreum KM20] gi|169804310|gb|ACA82928.1| Transcription elongation factor [Leuconostoc citreum KM20] Length = 363 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/343 (40%), Positives = 218/343 (63%), Gaps = 4/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R +V+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIERAIVIEALEDALKAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKH 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ EN +ISL+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDEDFENEDTEISLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIMQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+K Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDSRFLYMTLPGNQEAAMAPNDQMPNEHYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DPVGA VG RG RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D + Sbjct: 244 DPDLDPVGAMVGQRGGRVQSVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFDSE 303 Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSETE 346 >gi|46446396|ref|YP_007761.1| transcription elongation factor NusA [Candidatus Protochlamydia amoebophila UWE25] gi|46400037|emb|CAF23486.1| putative transcription termination-antitermination factor nusA [Candidatus Protochlamydia amoebophila UWE25] Length = 424 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 154/426 (36%), Positives = 251/426 (58%), Gaps = 26/426 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I + + EK I R++V+S + +S+Q AAR S++ V I+P+TG+I ++ E Sbjct: 4 DLIAIFEYLEREKGIKRELVISAIEESLQAAARKSVSGASNVTVTIHPKTGNIDVYCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V++VE + +ISL AR+ DP +IG + + P DFGR+A Q A+Q+I QK+R AER Sbjct: 64 IVDDVEVPSQEISLLAAREIDPDAEIGQFIDIVVTPKDFGRIAAQKARQIITQKLRGAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ ++ E+ISGT+KR G N+I+DLG + ++ E E + G++V + + Sbjct: 124 DVIYEEYRHRINELISGTIKRFVRGSNLIIDLGKVEAILPTREYPKTEKYQVGEKVLALV 183 Query: 187 YDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +V+ E G +V+LSR+HP+F+ +L EVPE+ +G + + + RD G R KL V S+D Sbjct: 184 LEVKDTENGGAEVILSRSHPEFVKQLLVQEVPEVSDGTIIIDKIVRDAGYRTKLTVRSTD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGMRG+RV+ +V EL +EKIDI+ +S D + NAL P + K+ L+E+ Sbjct: 244 LKVDPVGACVGMRGNRVKNIVRELHNEKIDIIPFSNDPIELLQNALSPIEIRKINLNEED 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN-----ERTQ 360 G I ++V + + IG++G N RL S+L G+ ++ + R D+N ER + Sbjct: 304 GIISIVVEDDDFAAVIGKKGMNARLNSRLIGYDLE--------VQRMTDYNRAMAIERNE 355 Query: 361 F-----------FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + ++ +I LV G+ ++ L E+A+I G E A +I Sbjct: 356 LAATDDPTLDQPLVGIEGINSLIFDHLVDAGYHTLKSLLTATPKELAAIPGISLEMADKI 415 Query: 410 QGRARE 415 + R+ Sbjct: 416 LEQIRK 421 >gi|182626384|ref|ZP_02954138.1| N utilization substance protein A [Clostridium perfringens D str. JGS1721] gi|177908335|gb|EDT70883.1| N utilization substance protein A [Clostridium perfringens D str. JGS1721] Length = 366 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/338 (42%), Positives = 218/338 (64%), Gaps = 4/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 E L + EK I + +L + D+I A + + T +++V+ + ++G+I ++ Sbjct: 4 EFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIHVY 63 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+++ Sbjct: 64 AQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQRIK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E+ER+ Y EF +K +I+ TV R + GNV VDLG +GV+ +E + E ++++ Sbjct: 124 ESERNVIYSEFAEKEFDILPSTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEKLQ 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S Sbjct: 184 LYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAVYS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V DE Sbjct: 244 NDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEADE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +VIV QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 304 ETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|332298598|ref|YP_004440520.1| NusA antitermination factor [Treponema brennaborense DSM 12168] gi|332181701|gb|AEE17389.1| NusA antitermination factor [Treponema brennaborense DSM 12168] Length = 483 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/429 (36%), Positives = 244/429 (56%), Gaps = 18/429 (4%) Query: 11 QIADAV---AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 Q+ADA+ +K I D +L + ++++ A + +GT + V+ + + D++++ Sbjct: 4 QMADAIRQLTQDKGISEDAILQTIENTLKAAYKRKFGTSDNAVVKFSDDLSDVAIYSRKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+ V + +I L A + P ++G + + P +F R AVQ+ KQ Q + E ++ Sbjct: 64 IVDGVYDPVTEIELDEALELSPECEVGDEIDILVDPKEFDRSAVQTGKQTAHQSLSEIQK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + E+KDKVGEII G +R G++ VDLG +GV+ RE DR+K+ I Sbjct: 124 DSLFAEYKDKVGEIIIGYYQRERNGSIYVDLGKIEGVLPAKNQSPRETYHKNDRIKALIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++ G Q++LSRT P F+ + +EVPEIY+ V++ + R+PG R K+AVFS Sbjct: 184 DVKKTNSGLQLVLSRTDPDFVRAVVELEVPEIYDKTVEIHKIVREPGYRTKIAVFSHRED 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVG 306 IDPVGACVG++G R+QAV+ EL EKIDI+ + PD F+ NAL PA ++ V+LDE Sbjct: 244 IDPVGACVGLKGVRIQAVIRELEGEKIDILKYDPDPREFIKNALSPAEVLDVVILDESKR 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT----EEEDSINRQ---------K 353 + +VP+EQ SLAIG++G NVRLA++L W+ID+ T EE DS+ + Sbjct: 304 QALAVVPEEQFSLAIGKQGLNVRLANRLADWSIDVKTEAQYEEFDSVVAESRKAVEQLFS 363 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEE-LACVKISEIASIEGFDEETAVEIQGR 412 D E + VDE +A +L G D+E+ + V+ I IEG + +Q Sbjct: 364 DIPETIASVAELPGVDEQVAAVLKENGIEDIEQFMQSVESGAIRQIEGLSDTDITAVQSL 423 Query: 413 AREYLEGID 421 + +E ++ Sbjct: 424 INDTVEFVE 432 >gi|91200793|emb|CAJ73846.1| strongly similar to transcription elongation protein NusA [Candidatus Kuenenia stuttgartiensis] Length = 357 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 214/338 (63%), Gaps = 32/338 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL++ D++ +K I ++VV + ++ AA+ + + + ++I+ +TG+I Sbjct: 6 LLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEI-------- 57 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VA + D ID P + GR+ Q+AKQVIIQK+REAERD Sbjct: 58 --------------VAMEGDRKID----------PSELGRITAQTAKQVIIQKIREAERD 93 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + +F + G I+SG V+R E +IV+LG ++GV+++ E + E+ G+RV++ I D Sbjct: 94 VIFEDFCKRKGVIVSGKVQRFEGATMIVNLGKTEGVLQKSEQTANEHYTIGERVRAVILD 153 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V++ ++ LSRTHP F+ KLF +EVPEI +++KA++R+ G R+K+AV SSD ++ Sbjct: 154 VKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVASSDENV 213 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 D VGACVGMRGSR++ +V EL EKIDI+ WS + + NAL+PA V+ ++L + Sbjct: 214 DCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILSPENRTA 273 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ++VP +QLSLAIG+RGQNVRLAS+LT W IDIIT+ E Sbjct: 274 TIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAE 311 >gi|298694558|gb|ADI97780.1| N utilization substance protein A, putative [Staphylococcus aureus subsp. aureus ED133] Length = 340 Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/289 (46%), Positives = 196/289 (67%), Gaps = 3/289 (1%) Query: 59 DISLFRLL---EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 D F+++ +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AK Sbjct: 2 DQGTFKVIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAK 61 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175 Q ++Q++R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E Sbjct: 62 QAVMQRLRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEK 121 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 P +R+K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G Sbjct: 122 YIPNERIKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGD 181 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K++VFS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ Sbjct: 182 RSKISVFSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQ 241 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V +V++DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 242 VLEVIVDETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 290 >gi|307565711|ref|ZP_07628180.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A] gi|307345537|gb|EFN90905.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A] Length = 421 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 223/355 (62%), Gaps = 8/355 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV +E+EN Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADDELENENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++K++ Sbjct: 84 QISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKNR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I+SG V + V+ VD N++ ++ + E I R+N R G+ +++ I+ V + P Sbjct: 144 VGQIVSGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRKGETIRAVIHRVTNDNNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIKKVARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSSLTIDEETKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII-----TEEEDSINRQKDFNERTQFFMQAI 366 +SLAIGR G N++LAS LT +TID+ E ED I + +E Q+ + AI Sbjct: 324 VSLAIGRNGLNIKLASMLTDYTIDVFRELDENETEDDIYLDEFADEIDQWVIDAI 378 >gi|326692688|ref|ZP_08229693.1| transcription elongation factor NusA [Leuconostoc argentinum KCTC 3773] Length = 365 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 141/343 (41%), Positives = 218/343 (63%), Gaps = 4/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIERAVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKV 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ EN +I L+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDEDFENEDTEIPLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + + + E+ R GDR+K Sbjct: 124 SREAIYNKFADYQDEIITGEVDRQDTRFLYLTLPGNQEAAMAPADQMPNEHYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ VT V+ D + Sbjct: 244 DADLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPE 303 Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESE 346 >gi|296111951|ref|YP_003622333.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU 11154] gi|295833483|gb|ADG41364.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU 11154] Length = 363 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 140/343 (40%), Positives = 217/343 (63%), Gaps = 4/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIERTVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKS 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ EN +I+L+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDEDFENEDTEIALQDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+K Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDARFLYLTLPGNQEAAMAPNDQMPNEHYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D + Sbjct: 244 DTDLDPVGAMVGQRGGRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFDPE 303 Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESE 346 >gi|269792606|ref|YP_003317510.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100241|gb|ACZ19228.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 369 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 145/343 (42%), Positives = 227/343 (66%), Gaps = 5/343 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK + DV+ S + ++ A R G ++ V I+ E G+I L + +VV EV + Sbjct: 17 EKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSEVKQVVREVTCPDTE 76 Query: 79 ISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 IS++ A R ++ G V+ + P +FGR+A Q+A+QVIIQ++++AER + EF D+ Sbjct: 77 ISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAERQIIFEEFADR 136 Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 G+++ GT+ +VE ++V L + ++ ++ R+E + E R GDR K ++ DVR+ +GP Sbjct: 137 TGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRYKFFLLDVRQTTKGP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRTHP + KLF +EVPEI +GI+++K V R+ G R+K+AV S DS++DPVGACVG Sbjct: 197 RIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQSLDSNVDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRIEVIVPK 314 +G+R+++V+ EL E++D++VWS D +V NAL PA V KV +LD++ + V V Sbjct: 257 PKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPLLDQERA-LRVFVRP 315 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +QLSLAIG+ GQNVRLA++LTGW IDI E + + KD E Sbjct: 316 DQLSLAIGKAGQNVRLAARLTGWKIDIKVLEPERLPTLKDLFE 358 >gi|331701346|ref|YP_004398305.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329128689|gb|AEB73242.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 398 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 141/340 (41%), Positives = 216/340 (63%), Gaps = 1/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ + ++ A + YG ++ V + + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVSFDDKKGEMHVYAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + Q+SL A + + ++G + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDDVVDDQLQVSLDEALEINKGYELGDEIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ E+++GTV+R + V V+LG + V+ + + E RP DR+K Y+ Sbjct: 124 ENVFDEYSKYEDELVTGTVERQDTRFVYVNLGKVEAVMGSKDQMPNEVYRPQDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 KVENATKGPQVFVSRTATGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG VG RG RVQ +V EL E +DIV W D A+++ N+L PA V V+ D+D R Sbjct: 244 IDPVGTAVGPRGQRVQTIVNELHGENMDIVEWDEDDASYIANSLNPAEVIDVIFDDDNER 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 ACTVIVPDYQLSLAIGKKGQNARLAAKLTGFKIDIKSETE 343 >gi|57234284|ref|YP_181708.1| transcription elongation factor NusA [Dehalococcoides ethenogenes 195] gi|57224732|gb|AAW39789.1| N utilization substance protein A [Dehalococcoides ethenogenes 195] Length = 491 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 136/340 (40%), Positives = 214/340 (62%), Gaps = 1/340 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + + VVE+V + Sbjct: 12 LSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVMAEKLVVEKVTD 71 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ EAE + E+ Sbjct: 72 SRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHEAENTAIFDEY 131 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K G+ + G V+R+E + VD+G + ++ E E R G R+K Y+ DV + + Sbjct: 132 ASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKVYVVDVAKTAK 191 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + IDPVG C Sbjct: 192 GPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGALQPGIDPVGCC 251 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG+RG R+Q +V+EL EKID+V W + A F+ N+L PA VTKV+L+E V++P Sbjct: 252 VGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILNEAEKSAIVVIPD 311 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ Sbjct: 312 RQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEE 351 >gi|306820436|ref|ZP_07454072.1| transcription termination factor NusA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551511|gb|EFM39466.1| transcription termination factor NusA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 359 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 219/358 (61%), Gaps = 26/358 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ D + +K I ++++L + +I A + YG+ +++ V I+ + GDI + + Sbjct: 4 EFIRALDQLEKQKGIKKEILLDAINQAILNAYKKNYGSNAEVEVSIDTKKGDIKIINPIT 63 Query: 68 VVEE-----VEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 +V++ ++N Y Q K ++ G +V + + P DFGR+A Q+A+Q+ Sbjct: 64 IVDDDKVDILDNEMTVEYANQFFGKQYKE-------GDIVREEVTPKDFGRIATQAARQI 116 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRD 168 ++QK++EAE+D QY EFK K EII+G V R+ V D+ N++GV+ Sbjct: 117 VVQKIKEAEKDIQYTEFKKKETEIITGMVSRISKSTVYADISILGENDIMINAEGVLPNG 176 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 E +S +N G +K YI +V+R Q++LSR+HP + +LF MEVPEI++G V++ + Sbjct: 177 EQMSGDNYELGQNMKFYILEVKRTNNKTQIVLSRSHPGLVKRLFEMEVPEIFDGTVEIIS 236 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 +SR+ GSR K+AV ++ +DP+GACVG RG RV+ + E+ EKIDI+ ++ D A ++ Sbjct: 237 ISREAGSRTKMAVKTNMQDVDPIGACVGTRGQRVKNITDEINGEKIDIIEYNDDLAEYIT 296 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +L PA V V +DE+ +VIVP ++LSLAIG+ GQN RLA++LT W IDI E E Sbjct: 297 ASLSPAKVVSVEIDEEEKIAKVIVPDDKLSLAIGKEGQNARLAAKLTNWKIDIKCESE 354 >gi|168704029|ref|ZP_02736306.1| transcription elongation factor NusA [Gemmata obscuriglobus UQM 2246] Length = 497 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 156/424 (36%), Positives = 242/424 (57%), Gaps = 40/424 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L++ D + E+ I +DV+ ++ +IQ AA + + V I+ TG I Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHI-------- 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VA+ D +D P+ GR+A QSAKQ+IIQK+REAE D Sbjct: 65 --------------VAKYGDQELD----------PITLGRIAAQSAKQMIIQKIREAESD 100 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF K E++ GTV RV+ G IV LG S+ ++ R E I E G+RVK+ I + Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGKSEALLPRSEQIPGETHHVGERVKAIIME 160 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR++ +++LSR HP+F+ LF E+PEI I+ ++AV+R+ G R+K+AV S D + Sbjct: 161 VRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMKV 220 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 D VGACVG+RGSR++ V+ EL E+IDIV W+ + NAL+PA ++ V +GR Sbjct: 221 DAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGRA 280 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQFFMQAI 366 V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T +E +++ R + ++F Q Sbjct: 281 IVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELAEALERAE------RWFGQLP 334 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 + + + L+ EGF ++ +A G +E A E+ A EY + ++ ++++ Sbjct: 335 HASPELTNALIEEGFLSYNDITMTDDEGLAEFTGLTQEAADEVVMYAEEYADVMERSVEE 394 Query: 427 KIRE 430 + R+ Sbjct: 395 ERRQ 398 >gi|256847048|ref|ZP_05552494.1| transcription termination factor NusA [Lactobacillus coleohominis 101-4-CHN] gi|256715712|gb|EEU30687.1| transcription termination factor NusA [Lactobacillus coleohominis 101-4-CHN] Length = 385 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/358 (40%), Positives = 215/358 (60%), Gaps = 22/358 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64 + ELL D + EK I +DV+++ + D++ A + Y +++ V+I+ +TGD +F Sbjct: 7 KAELLGAMDVLEKEKGIKKDVIVNALTDALANAYQKNYDDNNANVEVKIDEQTGDFKVFA 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VV+EV N QISL+ A +IG + + P DFGR+A Q+AK V++Q++RE Sbjct: 67 TKKVVDEVTNPIEQISLRDAMHVSHGYEIGDDFKEEVTPNDFGRIAAQTAKSVVLQQLRE 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 ER Y ++ +++ G V R + + ++L G + + + + + E+ R D V+ Sbjct: 127 EERRIVYEKYNKLKDDLVDGEVAREDSRFIYINLTGGVEAAMNKHDQMPNEHYRTHDHVQ 186 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V ++ +GPQV +SRT P + +LF EVPEI GIV++K + R+ G RAK+AVFS Sbjct: 187 VYVTRVLKDTKGPQVFVSRTAPDLLKRLFEKEVPEISQGIVEIKGIVREAGDRAKVAVFS 246 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DS++D VG CVG RG+RVQ +V +L E IDIV + + F+ NAL PA V V+ DE Sbjct: 247 RDSNVDAVGTCVGPRGARVQTIVNQLGGENIDIVKFEEEPEDFIRNALNPAEVKAVIFDE 306 Query: 304 DVGRIE--------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + G IE VIVP +QLSLAIG+RGQNVRLA+QLTG+ IDI Sbjct: 307 NNGEIEENQPKVDGEESEPRVHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDI 364 >gi|300173097|ref|YP_003772263.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG 18811] gi|299887476|emb|CBL91444.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG 18811] Length = 363 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/351 (39%), Positives = 224/351 (63%), Gaps = 6/351 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R++V++ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIEREIVVAALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKN 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV ++ EN +ISL A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDDDFENEDTEISLTDALVINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + ++ + E R GDR+K Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDARFLYMTLPGNQEAAMAPNDQMPNERYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ + + Sbjct: 244 DTDLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFNPE 303 Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQ 352 R + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E +S+++Q Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLSKQ 354 >gi|302338537|ref|YP_003803743.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM 11293] gi|301635722|gb|ADK81149.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM 11293] Length = 496 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/333 (41%), Positives = 211/333 (63%), Gaps = 1/333 (0%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++ ++ I ++V + D + A + +GT + V + + ++++F E+VE VE+ Sbjct: 11 SLVQDRGISEELVRKTIEDFLLAAYKRKFGTTENAVVRFSEDGNEVAIFAAKEIVENVED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ LK A + +IG + + P +F RVAVQSAKQ Q +RE ++D Y EF Sbjct: 71 PVTEMPLKEALTYNEECEIGDELLIEINPKEFDRVAVQSAKQKAKQTLREIQKDTLYSEF 130 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K+K GE++ G +R GN+ VDLG +G++ R RE RP DR+K+ IY+V + Sbjct: 131 KEKEGEMVIGYYQRERNGNIFVDLGKIEGILPRRYQSPREVYRPNDRIKALIYEVSKSPS 190 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G Q++LSRTH F+ ++F +EVPE+Y+ V++ + R+PG R K+AV+S+ +DPVGAC Sbjct: 191 GLQIVLSRTHTDFVKRIFELEVPEVYDKTVEIFKIVREPGYRTKIAVYSNRDDVDPVGAC 250 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVP 313 VGM+G R+QAVV EL EKIDI+ + D+ +F+ NAL PA V VV LDE + +V Sbjct: 251 VGMKGVRIQAVVRELEGEKIDILKYDIDARSFIKNALSPAEVQNVVILDEAKRQALAVVE 310 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + QLSLAIG++G NVRLA++L W ID+ T E+ Sbjct: 311 ENQLSLAIGKQGLNVRLANRLVDWNIDVKTIEQ 343 >gi|313885291|ref|ZP_07819042.1| transcription termination factor NusA [Eremococcus coleocola ACS-139-V-Col8] gi|312619397|gb|EFR30835.1| transcription termination factor NusA [Eremococcus coleocola ACS-139-V-Col8] Length = 415 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/339 (41%), Positives = 209/339 (61%), Gaps = 2/339 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + EK I DV+ + ++ A + Y ++ V N + G I +F++ + Sbjct: 4 ELVQAMQVLEEEKGISADVIKDALESALVLAYKRNYDQSQNVEVVFNADKGTIKVFQVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +I+L A D + ++ + + P DFGR+A Q+AK VI+Q++REAER Sbjct: 64 VVEEVNDPNEEIALSDALDIHKAYELDDTIKFEITPKDFGRIATQTAKHVILQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ EI++GTV+R + + ++LG + V+ E I E L RVK Y+ Sbjct: 124 NIVYDEYIQYEDEILNGTVERQDNRFIYINLGKIEAVMPVREQIPTEELTMDQRVKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGPQ+++SR H F+ +LF EVPEI+NGIV++ +++R+ G R+K+AV S DS Sbjct: 184 KVDKTNRGPQIIVSRAHANFLRRLFENEVPEIFNGIVEIMSIAREAGDRSKVAVRSQDSQ 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDV 305 IDP+G CVG G RV +V EL E IDIV + D A F+ NA+ P+ V VV + E+ Sbjct: 244 IDPIGTCVGAGGERVNTIVAELNGENIDIVEYDDDPAQFIKNAMSPSQVIDVVFNDPENP 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG++GQN RLA++LTG+ IDI +E Sbjct: 304 NHCIVVVPDYQLSLAIGKKGQNARLAARLTGYKIDIKSE 342 >gi|261367202|ref|ZP_05980085.1| transcription termination factor NusA [Subdoligranulum variabile DSM 15176] gi|282570800|gb|EFB76335.1| transcription termination factor NusA [Subdoligranulum variabile DSM 15176] Length = 357 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/349 (42%), Positives = 212/349 (60%), Gaps = 6/349 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59 M +AN E A+ E+ + D ++ + +I A + Y D + V+I+PE G Sbjct: 1 MATANN-EFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGA 59 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L ++VEEVEN Q+SL+ A+ S +G + L +FGR+A Q+AK VI Sbjct: 60 FRASLLRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIR 119 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRENL 176 Q +RE ER+ Q E + + E+I+ TV + E GNV++DLG V+ R+E + E Sbjct: 120 QGLREGERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETF 179 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+ V+ Y+ DV RGP+V +SRTHP + ++F +EVPEIY+G V++KA++R+ G+R Sbjct: 180 HEGETVQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGAR 239 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 KLAV+S + +DPVGAC+G RG+RV+ +V EL EKID++ WS D F+ AL PA V Sbjct: 240 TKLAVWSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKV 299 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 KV +L + V VP QLSLAIG +GQNVRL + LTG+ IDI E Sbjct: 300 VKVELLPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDIRPE 348 >gi|312793236|ref|YP_004026159.1| nusa antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180376|gb|ADQ40546.1| NusA antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 357 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/342 (40%), Positives = 212/342 (61%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E IDRD V SV+ ++ A + + G +S+++V I+PE G + ++ Sbjct: 12 ELFSAIDELEREYKIDRDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +I K+R Sbjct: 72 EYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E R + + K+ I++G ++R++ NVIV++ G + ++ +E IS E +PG Sbjct: 132 EKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQISGEEYKPGTM 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K YI DV+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYITDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|298242762|ref|ZP_06966569.1| transcription termination factor NusA [Ktedonobacter racemifer DSM 44963] gi|297555816|gb|EFH89680.1| transcription termination factor NusA [Ktedonobacter racemifer DSM 44963] Length = 374 Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 218/337 (64%), Gaps = 9/337 (2%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 IA +A EK + R+VV+ +A+++ A R +G ++R+E++ + G++ ++ VV + Sbjct: 9 IAQLIA-EKGLPREVVMETVANALLAAYRKSFGGGENVRIEVD-KNGEVHVWASKRVVAQ 66 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL A+ P+ +G ++ D F R+ Q+AKQVI+Q++REAE + Y Sbjct: 67 VNDSNEEISLAEAQRLVPNAALGQLL-DVDSSFIFSRIPTQTAKQVILQRIREAEHEHLY 125 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYI 186 + K VGEI GT+ R E +VD +G++ ETI E+ R R++ YI Sbjct: 126 EQVKGWVGEIRLGTLIREEQRGWVVDFDLDKVDKVEGLMPISETIPGEHYRMKQRLRLYI 185 Query: 187 YDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 YDVRR Q R Q+L+SRTH + +LF EVPEIY+G V++KA++R+PGSRAK+AV++ Sbjct: 186 YDVRRIQGRMLQILVSRTHRDLVRRLFENEVPEIYDGSVEIKAITREPGSRAKVAVYARQ 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G+CVG+RG R+ +V EL DEKIDI+ WSPD+A+FV NAL P KV L + Sbjct: 246 EGLDPIGSCVGVRGQRISNIVRELNDEKIDIIQWSPDTASFVANALSPVKPLKVELRDSD 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V VP+ QLSLAIG+ GQN RLA++LTGW +D++ Sbjct: 306 HTAIVTVPERQLSLAIGKDGQNARLAAKLTGWRVDVV 342 >gi|315924374|ref|ZP_07920596.1| transcription termination factor NusA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622253|gb|EFV02212.1| transcription termination factor NusA [Pseudoramibacter alactolyticus ATCC 23263] Length = 411 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/334 (38%), Positives = 214/334 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E L D + EK I+++ ++ + SI++A R YG+ ++ V + +G+I ++ Sbjct: 4 EFLAALDVLEKEKGINKEELIEAIESSIEQAYRKNYGSEQNVEVRFDRSSGEIQVYTTWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + + +L A D + +IG ++ + P FGR+A Q+AKQ+I QK++E ER Sbjct: 64 VVDEVMDPDKEKTLAEALAIDEAAEIGQMIEKKIAPRHFGRIAAQNAKQMIYQKIKEQER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y F ++ E+++G + V+ V VD+G++ G++ E I E+ + G R++ YI Sbjct: 124 KNIYDTFIERQDEVVTGKIDHVDRRMVYVDIGDATGLMPLSEQIPTEHYKAGQRIRVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V+ +GP++++SRTH + +L EVPEIY+G+V V++++R+ GSR+K+AV S+DS+ Sbjct: 184 SVKETSKGPEIMVSRTHSGLLKRLLEEEVPEIYDGVVDVESIAREAGSRSKIAVKSNDST 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG RG+R+Q ++ EL EKID++ ++ D F+ NAL PA V +V+ + + Sbjct: 244 VDPVGSCVGYRGTRIQNIIDELGGEKIDVIRYNEDIHEFIANALSPANVIEVLANPRDKQ 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +V Q SLAIG+ GQNVRLA +LTGW IDI Sbjct: 304 AYAVVDDFQFSLAIGKEGQNVRLAVRLTGWKIDI 337 >gi|281491260|ref|YP_003353240.1| transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] gi|281375001|gb|ADA64519.1| Transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] Length = 382 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/339 (39%), Positives = 212/339 (62%), Gaps = 1/339 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIHELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADE 341 >gi|15672746|ref|NP_266920.1| transcription elongation factor NusA [Lactococcus lactis subsp. lactis Il1403] gi|12723682|gb|AAK04862.1|AE006310_4 transcription termination protein NusA [Lactococcus lactis subsp. lactis Il1403] Length = 382 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/343 (39%), Positives = 215/343 (62%), Gaps = 1/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGTKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLD 345 >gi|125624585|ref|YP_001033068.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris MG1363] gi|124493393|emb|CAL98367.1| transcription elongation factor nusA [Lactococcus lactis subsp. cremoris MG1363] gi|300071376|gb|ADJ60776.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris NZ9000] Length = 382 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/339 (39%), Positives = 212/339 (62%), Gaps = 1/339 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADE 341 >gi|326406315|gb|ADZ63386.1| transcription antitermination factor [Lactococcus lactis subsp. lactis CV56] Length = 382 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 135/343 (39%), Positives = 215/343 (62%), Gaps = 1/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLD 345 >gi|218296560|ref|ZP_03497288.1| NusA antitermination factor [Thermus aquaticus Y51MC23] gi|218243102|gb|EED09634.1| NusA antitermination factor [Thermus aquaticus Y51MC23] Length = 385 Score = 256 bits (655), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 232/373 (62%), Gaps = 18/373 (4%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA---RSLY-------GTMSDIRVEIN 54 NR E ++ +A E+ + + VL ++++KA + Y G ++ V I+ Sbjct: 2 NR-EFIEALQQLALERGVSAEEVLEAFKEALRKAYIKRQKGYKKEEVEEGKGPEVDVYID 60 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 P+TG I + + VVE+VE+ +ISL A DP + +G + P+ P RVA+Q Sbjct: 61 PQTGRIEMVEVRRVVEKVEDPDKEISLAEALQYDPEVQLGDEMEFPIDPEGLSRVAIQDL 120 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISR 173 +Q++ Q+++E+ER+R + E+KDK G++++G V RV+ GNV VDLG + + + E I Sbjct: 121 RQLLTQRLKESERNRIFNEYKDKEGQVLTGVVTRVDNRGNVFVDLGRGEAYLPKSEQIPT 180 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E PG R+K+Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+P Sbjct: 181 ERYYPGQRLKAYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREP 240 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL P Sbjct: 241 GRRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSP 300 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI----ITEEEDSI 349 A V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I I++ +++I Sbjct: 301 AQVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAEISDLDEAI 360 Query: 350 NR--QKDFNERTQ 360 R Q++ E+T+ Sbjct: 361 RRAAQEEAEEKTR 373 >gi|116492653|ref|YP_804388.1| transcription elongation factor [Pediococcus pentosaceus ATCC 25745] gi|116102803|gb|ABJ67946.1| Transcription elongation factor [Pediococcus pentosaceus ATCC 25745] Length = 362 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 137/338 (40%), Positives = 206/338 (60%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ D + EK I ++V++ + ++ A + YG ++ VE N GDI ++ + + Sbjct: 4 EMITALDILEKEKGIKKEVIVEALEAALVSAFKRNYGQAQNVEVEFNDRKGDIHVYAVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ ++SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEEVEDDQLEVSLADALMINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ EI++G V + V VDLG + V+ + + I E P D +K YI Sbjct: 124 GVIYEKYGQYEDEIVTGEVSHRDNRYVYVDLGGVEAVMAKSDQIPGEQYEPHDHIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ SRT + +LF EVPE+Y+G V++ +++R+ G RAK+AV S+D Sbjct: 184 KVENNGKGPQIFASRTDSGLLKRLFEQEVPEVYDGTVEIMSIAREAGDRAKIAVRSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 ID VG CVG +G RVQ +V EL E +DI+ W D A ++ NAL+P+ V V+ + ED Sbjct: 244 IDAVGTCVGAKGQRVQTIVNELHGENMDIIEWKEDPAEYIANALKPSEVIDVLFNEEDEN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIGRRGQN RLA++L + IDI +E Sbjct: 304 YCMVIVPDYQLSLAIGRRGQNARLAAKLVNFKIDIKSE 341 >gi|254369910|ref|ZP_04985919.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp. holarctica FSC022] gi|157122880|gb|EDO66997.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp. holarctica FSC022] Length = 447 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 149/433 (34%), Positives = 268/433 (61%), Gaps = 19/433 (4%) Query: 48 DIRVEINPETGDISLFRLLEVVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPM 104 +I V+I+ TGD R+ +V E E+ Y+ ++ V +++ ++ G V+ +P+ Sbjct: 2 NIEVKIDRVTGDFKADRVWHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVK 61 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDG 163 ++GR+A AKQ++++K++ ER++ +++K+G+I+ G +KR Y ++VDLGN ++G Sbjct: 62 EYGRIAATMAKQILMKKIKNFEREKSARFYQNKIGDIVYGEIKRTTYEILVVDLGNNAEG 121 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + + I+RE R GD++++ + V ++ G ++LSR+ + LF +EVPE+ Sbjct: 122 ILPKKDLIARERYRVGDKIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEE 181 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 ++ + V R+ G R+K+ V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ Sbjct: 182 ELINIVNVVREHGFRSKVTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNE 241 Query: 282 DSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 D + IN+L P A + +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW Sbjct: 242 DIVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWK 301 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 I+++++ E +Q E+ F++A+++D A +L+ EG +E+LA + +E+ I Sbjct: 302 INVLSDAEQE-EKQMSIVEK---FVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLEI 357 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 EGFDEE E+Q RA+ + L + + +++L + G+ + L +N I T Sbjct: 358 EGFDEEIVDELQERAKA------VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVT 411 Query: 459 MEDLAGCSVDDLL 471 MEDLA SVD+LL Sbjct: 412 MEDLAELSVDELL 424 >gi|218133589|ref|ZP_03462393.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC 43243] gi|217990964|gb|EEC56970.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC 43243] Length = 393 Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 138/341 (40%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFRL 65 EL+ DA+ EK I +D+++ + +S+ + +G D I V I+ TGD +F Sbjct: 4 ELIGALDALEKEKGISKDILIEAIENSLITGCKQHFGITKDDGIVVRIDRNTGDFRVFIT 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL+ A + IG ++ + DF R+A Q AK +I+Q++RE Sbjct: 64 KRVVEHVEDPVEQISLEDAVKINSKAQIGNGINVEIKSEDFSRIAAQKAKGIILQRIREE 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K +I++G V+R+ + ++LG D V+ E + E P +R+K Y Sbjct: 124 ERKSVYSEYAMKEKDIVTGIVQRINGDKISINLGKMDAVLLPKEQVKGEVFVPTERIKLY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +G V +SR+HP + +LF EV E+ +G V++K ++R+ GSR K+AV+S++ Sbjct: 184 VVSVTDTAKGVIVKVSRSHPDLVKRLFESEVTEVKDGTVEIKGIAREAGSRTKMAVWSNN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D++ Sbjct: 244 PDVDPVGACVGLNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVVSVIADDEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 KTAQVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSESQ 344 >gi|295112228|emb|CBL28978.1| NusA antitermination factor [Synergistetes bacterium SGP1] Length = 364 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 136/338 (40%), Positives = 218/338 (64%), Gaps = 5/338 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + +Q + +A E+++ ++++S + ++ A + + V +N ETGDI + L Sbjct: 6 DFVQALNQIAEERNLAPELIVSSLEAALISAYKKYQSGDQRVEVHVNTETGDILVEELRT 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I+L A+ +G + P FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVEELESPDTEITLGDAKRLGFADASVGDELHLEKDPGHFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R Y EF DKVGE+++GT+ + E V+ +G ++ ++ R E I E PG +K Y Sbjct: 126 RQVIYSEFSDKVGEMMTGTIVKAENDQVLARIGERTEAILPRKERIPGEEYVPGQTMKFY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + KL +E+PE+ +G+++++ + R+ G RAK+++ + D Sbjct: 186 VLDVRQMTRGPKIVISRTHPGLLRKLMELEIPEVRDGVIEIRNIVREGGGRAKVSLSTMD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDE 303 ++DPVGACVG G+R++A+ EL EK+DI+VWS D ++ NAL PA V KV VLD+ Sbjct: 246 QNVDPVGACVGAGGARIKAISQELMGEKVDIIVWSSDPLAYIRNALSPAQVVKVEPVLDQ 305 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + P EQLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 306 EHAAKAYVEP-EQLSLAIGKAGQNVRLAARLTGWKIDI 342 >gi|325110092|ref|YP_004271160.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324970360|gb|ADY61138.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 496 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 149/405 (36%), Positives = 239/405 (59%), Gaps = 36/405 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L+I DA+ +K ID+++V + +I A R YG ++ V I+ +G Sbjct: 2 NASEVLRIVDAIHRDKGIDKEIVFEGIEQAILTALRKYYGDEDELIVLIDRNSGA----- 56 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 PS+ G + L P GR+A Q+AKQV+IQK+RE Sbjct: 57 ------------------------PSVQHNG---EYLDPDILGRIAAQTAKQVMIQKIRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD Y EF ++ ++++GTV R+E+G V++G + ++ R E I E+ R +R+++ Sbjct: 90 AERDALYDEFIEQKSQLLTGTVTRLEHGVATVNIGKVEAILPRSEQIPGESHRVNERIRA 149 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DVR+ +++LSR HP F+ +LF +E+PEI +++V++++R+ G R K+AV Sbjct: 150 VITDVRKAGSRIKIVLSRVHPDFVRRLFEVEIPEIAENVIEVRSLAREAGYRTKIAVSCY 209 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+SID VGACVG+RG+R++ +V EL E+IDIV W+ + NAL+PA V V+L Sbjct: 210 DNSIDAVGACVGVRGARIRNIVDELSGERIDIVRWNDSLQILIPNALQPAEVEDVILCPM 269 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +GR+ V+V +QLSLAIG++GQNVRLAS+L GW I+++T +E ++ Q F + Sbjct: 270 LGRVIVLVRDDQLSLAIGKKGQNVRLASKLVGWDIEVMTRDE--LDEQ--LERSVIAFSE 325 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 V E +A LV++GF ++L+ ++ + + G +E EI Sbjct: 326 VPLVTEDLAESLVSQGFFSFDDLSVIEPEHLVELSGLTDEQCDEI 370 >gi|329942818|ref|ZP_08291597.1| transcription termination factor NusA [Chlamydophila psittaci Cal10] gi|332287410|ref|YP_004422311.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC] gi|313847990|emb|CBY16987.1| N utilization substance protein A [Chlamydophila psittaci RD1] gi|325507005|gb|ADZ18643.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC] gi|328815078|gb|EGF85067.1| transcription termination factor NusA [Chlamydophila psittaci Cal10] gi|328914659|gb|AEB55492.1| N utilization substance protein A [Chlamydophila psittaci 6BC] Length = 434 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 152/429 (35%), Positives = 245/429 (57%), Gaps = 25/429 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F E Sbjct: 4 DLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ +V EI+SG VKR G N+I+DLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SSD Sbjct: 184 YEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSSSD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + ED Sbjct: 244 PKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN-----ERTQ 360 I ++V + IG+RG N RL SQ+ + ++ + R ++N +R Q Sbjct: 304 KVIAIVVQDADYATVIGKRGINARLISQILDYELE--------VQRMSEYNKLLEIQRLQ 355 Query: 361 FF----------MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 ++ + +++ LV G+ + ++ +++AS+ G E A +I Sbjct: 356 LAEFDSPLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKIL 415 Query: 411 GRAREYLEG 419 + +Y EG Sbjct: 416 EQVSKYGEG 424 >gi|303235674|ref|ZP_07322281.1| transcription termination factor NusA [Prevotella disiens FB035-09AN] gi|302484121|gb|EFL47109.1| transcription termination factor NusA [Prevotella disiens FB035-09AN] Length = 409 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/328 (41%), Positives = 210/328 (64%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV EV++ Sbjct: 12 KSIDRTTLVSVLEESFRNVIAKIYGSDENFDVIVNPDKGDFEIYRNRVVVADGEVQDENK 71 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A+ P ++G VS+P+ FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 72 EISLTDAQKIVPDYEVGEDVSEPVDFAKFGRRAILNLRQTLSSKVLELEHDSLYNKYKDR 131 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V +V V+ VD N++ ++ + E I R+ R G+ +++ I V E P Sbjct: 132 VGQIISGEVYQVWKREVLLVDEDNNELILPKGEQIPRDQYRKGETIRAVILRVDNENNNP 191 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 192 KIILSRTAPTFLERLLEAEVPEIEDGLISIKGIARMPGERAKIAVESYDDRIDPVGACVG 251 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 252 VRGSRVHGIVRELCNENIDVINWTANTKLFIQRALSPAKVSSLTIDEENKKAEVFLQPEE 311 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 312 VSLAIGRGGMNIKLASMLTGYTIDVFRE 339 >gi|315185930|gb|EFU19694.1| transcription termination factor NusA [Spirochaeta thermophila DSM 6578] Length = 488 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/328 (41%), Positives = 203/328 (61%), Gaps = 3/328 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYT 76 E+ I ++V + D + A + +GT + VE + + +++L+ +VV E+ E+ Sbjct: 15 ERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQVVADEDFEDEV 74 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 QI L AR P + G + + P F R AVQ AKQ Q+++E +RD Y EFKD Sbjct: 75 LQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEIQRDTLYSEFKD 134 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 KVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+ IY+V + G Sbjct: 135 KVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKALIYEVNKTPSGL 194 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S +DPVGACVG Sbjct: 195 QVILSRTHTEFVRKILELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRKEGVDPVGACVG 254 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKE 315 ++G R+QA+V EL E++D++ + PD F+ N+L PA V +V +LD + +V Sbjct: 255 VKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRNKKHALAVVKDN 314 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIIT 343 QLSLAIG++G NVRLA++L W ID+ T Sbjct: 315 QLSLAIGKQGLNVRLANRLVDWNIDVKT 342 >gi|160913530|ref|ZP_02076221.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991] gi|158434082|gb|EDP12371.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991] Length = 548 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 218/335 (65%), Gaps = 8/335 (2%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFRLLEVVEEV 72 A+ ++ + +++V+ + +++ KA R + + D +RV ++ E G+I +F+ VVE V Sbjct: 12 AIESDRQLSKEIVVDALQEALSKAFRK-HIEIPDALVRVAVDDENGEIKVFQQRAVVETV 70 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 E+ +ISL A+ + ++++G VV + + DFGR AV AK V+ QK+REAE+ Y Sbjct: 71 EDDELEISLNDAKRINEALELGDVVEEEVNIADFGRAAVILAKNVMKQKIREAEKLAVYE 130 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ DKV E+I GTV+ VE +V++G + ++ +++ I E R G ++ I +V +E Sbjct: 131 EYCDKVEEMIFGTVESVEEKFCVVNIGKTLAIMPKNQQIPNETYREGSMIRVVISEVNKE 190 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +G QVL+SR + +LF EVPEIY GI+++KA++R+ G R K+AV+S + +IDP+G Sbjct: 191 TKGAQVLVSRADATLVKRLFEKEVPEIYQGIIEIKAIAREAGERTKMAVYSHNENIDPIG 250 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE--- 309 AC+G RG+RVQ ++ EL+ EKIDI WS D + + NAL PA V V+ +E R + Sbjct: 251 ACIGPRGTRVQVIIDELKGEKIDIFEWSDDVSELIKNALSPAEVLAVIPNE--ARKDGLL 308 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+RG+N RLA +LTG IDI +E Sbjct: 309 VVVPDNQLSLAIGKRGKNARLAVKLTGHKIDIKSE 343 >gi|146297077|ref|YP_001180848.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410653|gb|ABP67657.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 356 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 135/342 (39%), Positives = 216/342 (63%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I+R+ + SV+ ++ A + + G +S+++V I+PE GD+ +F Sbjct: 12 ELFSAIDELEREYKIEREYIYSVLESALLTAYKQVRGIKDKNLSNVKVSIDPEKGDVKIF 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +IS++ AR D +G +V+ +P DF R A + +Q +I K+R Sbjct: 72 EYKKVVENVKDKRNEISVEDARKIDKRYQVGDIVAIEVPISDFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E +R+ + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKKRNIIFEDYSAKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGTM 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ DV+ +++ P V LSRTHP + +L EVPEI GI+++K ++R+ GSR+K+ Sbjct: 192 MKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKGIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKYLGSEKIDIVRWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLVEKKAFVLVPNDQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|307718805|ref|YP_003874337.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] gi|306532530|gb|ADN02064.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] Length = 488 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/328 (41%), Positives = 203/328 (61%), Gaps = 3/328 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYT 76 E+ I ++V + D + A + +GT + VE + + +++L+ +VV E+ E+ Sbjct: 15 ERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQVVADEDFEDEV 74 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 QI L AR P + G + + P F R AVQ AKQ Q+++E +RD Y EFKD Sbjct: 75 LQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEIQRDTLYSEFKD 134 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 KVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+ IY+V + G Sbjct: 135 KVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKALIYEVNKTPSGL 194 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S +DPVGACVG Sbjct: 195 QVILSRTHTEFVRKVLELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRKEGVDPVGACVG 254 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKE 315 ++G R+QA+V EL E++D++ + PD F+ N+L PA V +V +LD + +V Sbjct: 255 VKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRNKKHALAVVKDN 314 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIIT 343 QLSLAIG++G NVRLA++L W ID+ T Sbjct: 315 QLSLAIGKQGLNVRLANRLVDWNIDVKT 342 >gi|89898348|ref|YP_515458.1| transcription elongation factor NusA [Chlamydophila felis Fe/C-56] gi|89331720|dbj|BAE81313.1| N utilization protein A [Chlamydophila felis Fe/C-56] Length = 434 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 246/421 (58%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F E Sbjct: 4 DLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ +V EI+SG VKR G N+++DLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRVNEILSGVVKRFAKGSNLVIDLGKVEGLLPARYYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR+HP+F+ +LF EVPE+ +G V++ ++R+ G R KLAV S+D Sbjct: 184 YEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEDGSVEIIKIAREAGYRTKLAVSSTD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + ED Sbjct: 244 PKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DF-NER 358 I ++V + IG+RG N RL SQ+ + +++ ++E + Q+ +F N + Sbjct: 304 KVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDNPQ 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + + +++ LV G+ + ++ +++AS+ G E A +I + +Y E Sbjct: 364 LDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKYGE 423 Query: 419 G 419 G Sbjct: 424 G 424 >gi|62185081|ref|YP_219866.1| transcription elongation factor NusA [Chlamydophila abortus S26/3] gi|62148148|emb|CAH63905.1| N utilization substance protein A [Chlamydophila abortus S26/3] Length = 434 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/429 (35%), Positives = 245/429 (57%), Gaps = 25/429 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F E Sbjct: 4 DLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ +V EI+SG VKR G N+I+DLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SSD Sbjct: 184 YEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSSSD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + ED Sbjct: 244 PKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAVLEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN-----ERTQ 360 I ++V + IG+RG N RL SQ+ + ++ + R ++N +R Q Sbjct: 304 KVIAIVVQDADYATVIGQRGINARLISQILDYELE--------VQRMSEYNKLLEIQRLQ 355 Query: 361 FF----------MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 ++ + +++ LV G+ + ++ +++AS+ G E A +I Sbjct: 356 LAEFDSPLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKIL 415 Query: 411 GRAREYLEG 419 + +Y EG Sbjct: 416 EQVSKYGEG 424 >gi|213418035|ref|ZP_03351112.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 319 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 199/305 (65%), Gaps = 3/305 (0%) Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 1 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 60 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 61 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 120 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 121 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 180 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 181 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 240 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSEN 476 + + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ Sbjct: 241 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDE 300 Query: 477 KGGNI 481 K G + Sbjct: 301 KAGEL 305 >gi|296122805|ref|YP_003630583.1| transcription termination factor NusA [Planctomyces limnophilus DSM 3776] gi|296015145|gb|ADG68384.1| transcription termination factor NusA [Planctomyces limnophilus DSM 3776] Length = 442 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/419 (37%), Positives = 251/419 (59%), Gaps = 39/419 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L+I D++ +KSID+++V + +I AAR +G I V I+ +G Sbjct: 2 NGNEVLRIVDSIHRDKSIDKEIVFEGVEQAILSAARKHFGEEEVIEVHIDRTSGQPM--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ +I DRD DI GR++ Q+AKQV+IQK+RE Sbjct: 59 -------VKTNGREI------DRDELGDI------------LGRISAQTAKQVMIQKIRE 93 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD + E+ G+I+SGTV R E + V++G ++ ++ R E I E+ RP +R+++ Sbjct: 94 AERDTLFDEYAQLRGQIVSGTVTRNEGSAITVNIGKAEAILPRSEMIPGESHRPNERIRA 153 Query: 185 YIYDVRREQRGPQV--LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +V++ GP+V +LSR HP F+ +L +E+PE+ I+++++++R+ G R K+AV Sbjct: 154 VVLEVKK--MGPRVRVVLSRAHPDFVRRLLELEIPEVNERIIEIRSLAREAGYRTKVAVS 211 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 +DS+IDPVGACVG+RG+R++ V EL E+I++V W+ V NA++P+ V V+L Sbjct: 212 CADSNIDPVGACVGVRGARIRNVGEELGGERIEVVRWNDSLQVLVPNAMQPSEVEDVILC 271 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +GR+ V+V +QLSLAIG+RGQNVRLAS+L GW ID++T EE +++Q D + + Sbjct: 272 PMLGRVLVLVRDDQLSLAIGKRGQNVRLASKLVGWDIDVMTREE--LDQQLD--QAVVAY 327 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA---VEIQGRAREYLE 418 Q V E +A LV++GF E+L+ ++ E+ + +E A VE R E +E Sbjct: 328 SQIPGVSEELAEGLVSQGFLSFEDLSVIEPDELMEMGSLTQEQADVIVEYAERESERIE 386 >gi|261881035|ref|ZP_06007462.1| N utilization substance protein A [Prevotella bergensis DSM 17361] gi|270332217|gb|EFA43003.1| N utilization substance protein A [Prevotella bergensis DSM 17361] Length = 424 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 137/326 (42%), Positives = 209/326 (64%), Gaps = 3/326 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR ++SV+ +S + YG+ + V +NP+ GD ++R VVE EVE+ Sbjct: 23 DKDIDRTTLVSVLEESFRNVLAKKYGSDENFDVIVNPDKGDFEIYRNRVVVENGEVEDDN 82 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 QISL A+ +P ++G VS+P+ FGR A+ + +Q + K+ E E D Y ++KD Sbjct: 83 KQISLADAQKIEPDYEVGEDVSEPVDFAKFGRRAILTLRQTLASKILELEHDSLYNKYKD 142 Query: 137 KVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +VG++ISG V +V V+ VD N++ ++ R E I R+ R G+ +++ I V E Sbjct: 143 RVGQVISGEVYQVWKREVLLVDDENNELILPRSEQIPRDQYRKGETLRAVIDRVENENNN 202 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P FM +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 203 PKIILSRTSPVFMERLLEQEVPEIADGLIAIKKIARMPGERAKIAVESYDDRIDPVGACV 262 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G+RGSRV +V EL +E ID++ W+ ++ F+ AL PA +T + LDE+ + +V + E Sbjct: 263 GVRGSRVHGIVRELCNENIDVINWTANTMLFIQRALSPAKITSISLDEENRKADVYLQPE 322 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDI 341 ++SLAIGR G N++LAS LT +TID+ Sbjct: 323 EVSLAIGRGGLNIKLASMLTEYTIDV 348 >gi|222529041|ref|YP_002572923.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|222455888|gb|ACM60150.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725] Length = 357 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/342 (39%), Positives = 213/342 (62%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I++D V SV+ ++ A + + G +S+++V I+PE G + ++ Sbjct: 12 ELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q +I K+R Sbjct: 72 EYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEIPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGTL 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ DV+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|255994863|ref|ZP_05427998.1| transcription termination factor NusA [Eubacterium saphenum ATCC 49989] gi|255993576|gb|EEU03665.1| transcription termination factor NusA [Eubacterium saphenum ATCC 49989] Length = 367 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 136/338 (40%), Positives = 213/338 (63%), Gaps = 1/338 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + E I +D ++ +M +S+ A YG S V+I+ +TG + + Sbjct: 4 EIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIVSKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V EVEN ++SL + D + GGVV + FGR+A Q+AKQV +QK++E E+ Sbjct: 64 IVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKEREK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EFK + GEII+G V RV + V L + +I E I E GDR+K+ I Sbjct: 124 QKIFSEFKGREGEIITGKVSRVTMRAIHVALNTTTAIIPLAEQIQGETYEVGDRIKACIK 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V QRGPQ++LSR PQF+ +LF EVPEI NG V++ ++R+ G+R K+AV+S + Sbjct: 184 TVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYSDNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGAC+G+RG+R+ A++ +L EK+D+V+W+ D FV A++PA +++L E+ + Sbjct: 244 LDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLEE-DK 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + VIV ++LSLAIGR+GQNVRLAS+L +ID+ T++ Sbjct: 303 VIVIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKD 340 >gi|15806798|ref|NP_295520.1| transcription elongation factor NusA [Deinococcus radiodurans R1] gi|6459575|gb|AAF11353.1|AE002021_2 N-utilization substance protein A [Deinococcus radiodurans R1] Length = 401 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 133/327 (40%), Positives = 211/327 (64%), Gaps = 1/327 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 VA ++I+ ++ S+Q+A I V ++P++G + + + EVVE+VE+ Sbjct: 19 VAQARNINELQLIEAFEQSLQQAYVRNVEPDKRIEVHLDPQSGVLEVLIVREVVEKVEDE 78 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+ + E+K Sbjct: 79 HMQISLADALELDPGVEIGMEMEFPVDQEMFSRIALQAAKQTLTQKMRETERNVVFNEYK 138 Query: 136 DKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 D+ G++++ V R + GN V+LG + ++ E I E L PG RVK Y+ +VR+ + Sbjct: 139 DREGQVLNAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGGRVKIYLKEVRKTPK 198 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS +S++DP+GAC Sbjct: 199 GPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNSNVDPIGAC 258 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 +G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + +D V V Sbjct: 259 IGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGPIEVQQDSRDATVTVTP 318 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++LTG+ ID+ Sbjct: 319 DQLSLAIGKGGQNVRLAAKLTGFKIDL 345 >gi|312622703|ref|YP_004024316.1| nusa antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203170|gb|ADQ46497.1| NusA antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 357 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 135/342 (39%), Positives = 213/342 (62%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I++D V SV+ ++ A + + G +S+++V I+PE G + ++ Sbjct: 12 ELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q +I K+R Sbjct: 72 EYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGTL 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ DV+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|317051740|ref|YP_004112856.1| transcription termination factor NusA [Desulfurispirillum indicum S5] gi|316946824|gb|ADU66300.1| transcription termination factor NusA [Desulfurispirillum indicum S5] Length = 382 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 143/342 (41%), Positives = 219/342 (64%), Gaps = 5/342 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG--DISLFRL 65 E + + + EK++D+ +L + ++ A + Y +I I+ ETG D+S + Sbjct: 4 EFISSIEQLCREKNLDKTTLLEAIETAVVAALKRKYSQECEIFFRIDDETGVFDVSFEK- 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE+V + + +ISL A +G + P+ R+ Q+AKQ+I+Q+VR+ Sbjct: 63 -EVVEKVRDKSLEISLTDAIKIQEDAKVGQRIHVPIDIQTIARITAQTAKQIIMQRVRDV 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ E+++++GE+I V+RVE V++ +G DGV+ + + + + + GD VK+ Sbjct: 122 EKASLMDEYRERIGELILAPVERVEARRVVLSMGECDGVLLQSDILPTDTYKQGDVVKAV 181 Query: 186 IYDVRREQRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DV+ +RG Q+LLSRT QF+++LF EVPEI + V +KAV+R+ GSR+K+AV + Sbjct: 182 IRDVQLSRRGDVQILLSRTSEQFLLQLFREEVPEISSSNVVIKAVAREGGSRSKIAVKAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S +DPVGACVG++GSRV AVV E+ EKIDI+ WS + A F+ NAL PA V K+ + ++ Sbjct: 242 KSGMDPVGACVGVKGSRVSAVVEEIGGEKIDIIEWSDEPALFICNALNPAEVVKMDIYDE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 G V+VP+ QLSLAIGR+GQN RLA++LT W IDI +EEE Sbjct: 302 EGVAVVVVPERQLSLAIGRKGQNARLAAKLTNWKIDIYSEEE 343 >gi|224543310|ref|ZP_03683849.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM 15897] gi|224523843|gb|EEF92948.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 134/324 (41%), Positives = 208/324 (64%), Gaps = 2/324 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 +K +D +V+ + +++ K+ + Y GT S + I+ + G I +F VV++V + Sbjct: 18 DKGLDSAIVIEALTEALAKSYKKNYCGTESIVDCRIDGD-GQIRIFITHHVVDDVNDEDY 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 + S++ A++ DP +G V + +FGR+A KQ++ QK+REAE++ Y E+ +K Sbjct: 77 EYSIEEAQEIDPKYQVGDEVVEEADISEFGRLAAIQTKQLLRQKIREAEKEALYNEYINK 136 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 + EII+GTV RVE I+++G + ++ + I E L G+ VK Y+ +V R +G Sbjct: 137 LDEIINGTVDRVEERFAIINIGKTGALLSSKDQIPGETLVEGEHVKVYVSEVERTTKGTH 196 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + +SRTH + +LF MEVPEI+ G V++K+VSR+ G R+K+AV++++ IDP+GACVG Sbjct: 197 ISVSRTHEGLVKRLFEMEVPEIFEGTVEIKSVSREAGERSKIAVYTANPDIDPIGACVGP 256 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +G+RV+ VV EL E IDI+ WS D TF+ +AL PA V +V L+ V+VP +QL Sbjct: 257 KGNRVRNVVEELNGEMIDIIEWSDDPVTFISHALSPAKVERVKLNHAKNSALVVVPDDQL 316 Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341 SLAIG+RGQN RLA +LT W IDI Sbjct: 317 SLAIGKRGQNARLAVKLTNWKIDI 340 >gi|116618453|ref|YP_818824.1| transcription elongation factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097300|gb|ABJ62451.1| Transcription elongation factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 365 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 141/343 (41%), Positives = 216/343 (62%), Gaps = 4/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++ Sbjct: 4 ELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQVKH 63 Query: 68 VVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R Y +F D EII+G V R + + V+L GN + V+ ++ + E GDR+K Sbjct: 124 GRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPNDQMPNERYHMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 244 DTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPA 303 Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESE 346 >gi|312127897|ref|YP_003992771.1| transcription termination factor nusa [Caldicellulosiruptor hydrothermalis 108] gi|311777916|gb|ADQ07402.1| transcription termination factor NusA [Caldicellulosiruptor hydrothermalis 108] Length = 357 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 137/342 (40%), Positives = 212/342 (61%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I++D V SV+ ++ A + + G +S+++V I+PE G + ++ Sbjct: 12 ELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +I K+R Sbjct: 72 EYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E R + ++ KV I++G V+R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKRRSIIFEDYSSKVDNIVTGVVQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGVM 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K YI +VR +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYITEVRIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|29840227|ref|NP_829333.1| transcription elongation factor NusA [Chlamydophila caviae GPIC] gi|29834575|gb|AAP05211.1| N utilization substance protein A [Chlamydophila caviae GPIC] Length = 434 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/421 (36%), Positives = 244/421 (57%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F E Sbjct: 4 DLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ +V EI+SG VKR G N+I+DLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +V+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R KLAV SSD Sbjct: 184 QEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGFVEIVKIAREAGYRTKLAVSSSD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + ED Sbjct: 244 PKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DF-NER 358 I ++V + IG+RG N RL SQ+ + +++ ++E + Q+ +F N + Sbjct: 304 KVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDNPQ 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + + +++ LV G+ + ++ +++AS+ G E A +I + +Y E Sbjct: 364 LDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKYGE 423 Query: 419 G 419 G Sbjct: 424 G 424 >gi|297621094|ref|YP_003709231.1| Transcription elongation protein nusA [Waddlia chondrophila WSU 86-1044] gi|297376395|gb|ADI38225.1| Transcription elongation protein nusA [Waddlia chondrophila WSU 86-1044] Length = 424 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 235/392 (59%), Gaps = 26/392 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I + + EK I R++V+ + +S+Q AAR S++ V+I+P+TG+I++F E Sbjct: 4 DLVAIFEYLEKEKGIQREIVIHAIEESLQAAARKSVSGASNVTVQIDPKTGNINVFSEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+EVE +I L+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R AER Sbjct: 64 IVDEVEVPAQEILLEEAREIDPDCEIGQFIDILATPKDFGRIAAQKARQIISQKLRSAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ +V E++SGTVKR V+ N++VDLG + ++ + E + GDRV + + Sbjct: 124 DVIYEEYRHRVNEVVSGTVKRFVKGANLVVDLGKVEALMPMRQYPKTEKYKIGDRVLALL 183 Query: 187 YDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +V + G +V+LSR+ P+F+ +L EVPEI GIV + + R+ G R KL V ++D Sbjct: 184 MEVNDTDSGGAEVILSRSSPEFVRQLMIQEVPEIVEGIVVIDKIEREAGYRTKLTVRATD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGMRG+RV+ VV EL EKIDI+ +S D + NAL P + K+ + ED Sbjct: 244 QKVDPVGACVGMRGNRVKNVVRELNSEKIDIIPYSDDPIELLQNALSPIEIRKISISEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN-----ERTQ 360 I +++ + + IG++G N RL S+L G+ ++ + R D+N +RT+ Sbjct: 304 RVISIVIDDDDYAAVIGKKGMNARLNSRLIGYELE--------VQRMTDYNKTMAIQRTE 355 Query: 361 FF----------MQAI-NVDEIIAHLLVAEGF 381 + I V++++ LVAEGF Sbjct: 356 LAESDDPTLDHPLTGIEGVNKLVFEHLVAEGF 387 >gi|282857788|ref|ZP_06266997.1| transcription termination factor NusA [Pyramidobacter piscolens W5455] gi|282584458|gb|EFB89817.1| transcription termination factor NusA [Pyramidobacter piscolens W5455] Length = 364 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 213/335 (63%), Gaps = 5/335 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 E+ + +V+ S + ++ A R D V I+ TG +S+F + V+ + + Sbjct: 17 ERGLSEEVIFSSIEAALALAYRKFRDGKFDPVVAIDRATGSVSIFDVRRAVDAETHSDSE 76 Query: 79 ISLKVARDRD-PSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 ISL AR P + G V P+ P FGR+A Q+A+QVI Q++++AER+ Y EF Sbjct: 77 ISLAEARALGYPDVREGDSVKVPVLEHPKSFGRIAAQTARQVITQRLKDAEREIVYNEFN 136 Query: 136 DKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 DK+G++I+ T+ + E ++V L S+ V+ R+E I+ E PG+ K ++ DVR+ R Sbjct: 137 DKIGDLITATIFKAENDQILVRLSERSEAVLPREERIAGEVYTPGESKKFFLLDVRQTGR 196 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP++++SRTHP + KL +E+PEI++G V++K + R+ G+RAK+AV S+D ++D VGAC Sbjct: 197 GPRIVVSRTHPGLLRKLLELEIPEIHDGTVEIKGIVREAGARAKVAVASTDPAVDSVGAC 256 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI-EVIVP 313 VG G+R++++ +L DEKIDI+VW+ D F+ NAL PA VT V E R +V P Sbjct: 257 VGNSGARIRSISADLCDEKIDIIVWNEDPLEFIRNALSPARVTGVEAVEGQDRTAKVYAP 316 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +QLSLAIG+ GQNVRLA++LTGW +DI T D+ Sbjct: 317 ADQLSLAIGKAGQNVRLAARLTGWKVDINTNTGDT 351 >gi|46198657|ref|YP_004324.1| transcription elongation factor NusA [Thermus thermophilus HB27] gi|55980670|ref|YP_143967.1| transcription elongation factor NusA [Thermus thermophilus HB8] gi|1352608|sp|P48514|NUSA_THET8 RecName: Full=Transcription elongation protein nusA gi|642364|emb|CAA88036.1| NusA protein [Thermus thermophilus] gi|46196280|gb|AAS80697.1| N utilization substance protein A [Thermus thermophilus HB27] gi|55772083|dbj|BAD70524.1| N utilization substance protein A (NusA) [Thermus thermophilus HB8] Length = 387 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/345 (39%), Positives = 214/345 (62%), Gaps = 11/345 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAA---RSLY-------GTMSDIRVEINPET 57 E ++ +A E+ + + +L ++++KA + Y G ++ V I+P + Sbjct: 4 EFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYIDPNS 63 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 G I + + VVE+VE+ +I+L A DP + +G + P+ P + R+A+Q +Q+ Sbjct: 64 GRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDLRQI 123 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENL 176 + Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + R E I E Sbjct: 124 LTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPRSEQIPTEKY 183 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 PG R+K Y+ V + +GP +L+SR H + + L EVPEI GIV++KA++R+PG R Sbjct: 184 HPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPGRR 243 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA V Sbjct: 244 SKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPAQV 303 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I Sbjct: 304 GSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHF 348 >gi|282859024|ref|ZP_06268160.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010] gi|282588192|gb|EFB93361.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010] Length = 421 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 213/328 (64%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--LLEVVEEVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD ++R ++ ++VE+ Sbjct: 24 KSIDRTTLMSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADDDVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR +P ++G VS+ + FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLASKVLELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+II+G V + V+ VD N++ ++ + E I R+N R G+ +++ I+ V E P Sbjct: 144 VGQIITGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRKGETIRAVIHRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIKKIARMPGERAKIAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 324 VSLAIGRGGLNIKLASMLTGYTIDVFRE 351 >gi|291541940|emb|CBL15050.1| transcription termination factor NusA [Ruminococcus bromii L2-63] Length = 386 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 211/342 (61%), Gaps = 5/342 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + EK I D +L + +I A ++ YG ++ +++PE + Sbjct: 5 DLFEALRTFEKEKGIPMDYMLQNIEKAISVACKNYYGGNENVVFKVDPEKNSFDAKLVKT 64 Query: 68 VVEEVENYTCQISLKVAR--DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +++++ A+ ++ +G + P+ P G +V SA+ VI Q +R+ Sbjct: 65 VVDEVFDPNFEVTVEEAQQINKRKKFIVGDEIEVPIDPKHLGWTSVSSARNVIRQGIRQG 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E+ + +EF+ K+GEI++ TV+R++ G + +G S+ + + E + ++L+ GD +K Sbjct: 125 EKGQTLIEFQSKLGEIVTATVERIDPKSGVATIKIGKSEATLPKSEQLGHDDLKEGDHIK 184 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI DV+ +RGP ++SRTHP + +LF EVPEIY+G+V++K++SR+ GSR K+AV+S Sbjct: 185 VYIADVKDNERGPHAIISRTHPGLVKRLFEQEVPEIYDGVVEIKSISREAGSRTKMAVYS 244 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 S+ +D +G+C+G +G+RV +V EL EKIDIV++S D ++ AL PA V KV + D Sbjct: 245 SNPDVDAIGSCIGNKGARVNKIVEELGGEKIDIVLYSDDPEKYISAALSPASVCKVEITD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 E+ VP QLSLAIG +GQN RLA++LTGW IDI E Sbjct: 305 EETKSCRATVPDGQLSLAIGNKGQNARLAARLTGWRIDIRPE 346 >gi|309775437|ref|ZP_07670440.1| N utilization substance protein A [Erysipelotrichaceae bacterium 3_1_53] gi|308916826|gb|EFP62563.1| N utilization substance protein A [Erysipelotrichaceae bacterium 3_1_53] Length = 565 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/333 (40%), Positives = 217/333 (65%), Gaps = 4/333 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFRLLEVVEEV 72 A+ ++ + ++VV+ + +++ KA R + + D +RV++N ++GDI +++ +VE V Sbjct: 12 AIETDRKLSKEVVVDALQEALAKAFRK-HIEIPDALVRVDVNEKSGDIKVYQQRLIVENV 70 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 E+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REAE+ Y Sbjct: 71 EDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREAEKLVVYE 130 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ I +V +E Sbjct: 131 EYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVVITEVNKE 190 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S + +IDP+G Sbjct: 191 TKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHNENIDPIG 250 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VGRIEVI 311 AC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ E+ G + V+ Sbjct: 251 ACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEERKGGLLVV 310 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VP QLSLAIG+RG+N RLA +LTG IDI E Sbjct: 311 VPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAE 343 >gi|227431859|ref|ZP_03913883.1| transcription termination factor NusA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352401|gb|EEJ42603.1| transcription termination factor NusA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 365 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/343 (41%), Positives = 215/343 (62%), Gaps = 4/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++ Sbjct: 4 ELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQVKH 63 Query: 68 VVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R Y +F D EII+G V R + + V+L GN + V+ + + E GDR+K Sbjct: 124 GRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPSDQMPNERYHMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 244 DTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPA 303 Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESE 346 >gi|313897438|ref|ZP_07830981.1| transcription termination factor NusA [Clostridium sp. HGF2] gi|312957808|gb|EFR39433.1| transcription termination factor NusA [Clostridium sp. HGF2] Length = 566 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/333 (40%), Positives = 217/333 (65%), Gaps = 4/333 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFRLLEVVEEV 72 A+ ++ + ++VV+ + +++ KA R + + D +RV++N ++GDI +++ +VE V Sbjct: 12 AIETDRKLSKEVVVDALQEALAKAFRK-HIEIPDALVRVDVNEKSGDIKVYQQRLIVENV 70 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 E+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REAE+ Y Sbjct: 71 EDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREAEKLVVYE 130 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ I +V +E Sbjct: 131 EYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVVITEVNKE 190 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S + +IDP+G Sbjct: 191 TKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHNENIDPIG 250 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VGRIEVI 311 AC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ E+ G + V+ Sbjct: 251 ACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEERKGGLLVV 310 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VP QLSLAIG+RG+N RLA +LTG IDI E Sbjct: 311 VPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAE 343 >gi|116511573|ref|YP_808789.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris SK11] gi|116107227|gb|ABJ72367.1| Transcription elongation factor [Lactococcus lactis subsp. cremoris SK11] Length = 382 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 133/339 (39%), Positives = 210/339 (61%), Gaps = 1/339 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ + + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIAIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN DRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVDDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTVPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADE 341 >gi|312876952|ref|ZP_07736927.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796267|gb|EFR12621.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A] Length = 357 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 134/342 (39%), Positives = 211/342 (61%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I++D V SV+ ++ A + + G +S+++V I+PE G + ++ Sbjct: 12 ELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +I K+R Sbjct: 72 EYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E R + + K+ I++G ++R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGTM 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K YI +V+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|268316867|ref|YP_003290586.1| NusA antitermination factor [Rhodothermus marinus DSM 4252] gi|262334401|gb|ACY48198.1| NusA antitermination factor [Rhodothermus marinus DSM 4252] Length = 421 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/342 (39%), Positives = 212/342 (61%), Gaps = 5/342 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ +A+ K IDRD + ++ D + R YG+ + NP+ GDI + + E Sbjct: 5 ELVSSFAEIAHSKGIDRDTLQLIVEDVFRAMIRKRYGSDEAFEIIFNPDHGDIQILHIRE 64 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+E+ QI L AR DP ++G V+ + +FGR A+ +A+Q Q++R+ Sbjct: 65 VVPDWELEDPVTQIELSEARKIDPDFEVGDEVASEVNIAEFGRRAIMTARQTFSQRIRDL 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++ Y E+ + +GEI+ G + ++ V+V ++ ++ R+E I R+ R GD +++ Sbjct: 125 EKEKIYQEYSELIGEIVVGEIYQIRRREVLVMHNRTELILPREEQIPRDRYRKGDTLRAI 184 Query: 186 IYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VRRE G PQV++SR P F+ +L +EVPEI GIV+VK + R+PG RAK+AV S Sbjct: 185 VKEVRREAGGAPQVIISRADPVFLERLLELEVPEIEEGIVEVKKIVREPGERAKVAVVSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DPVGACVG+RG+R+ A+V EL +E ID++ WS D + AL PA V L+E+ Sbjct: 245 DERVDPVGACVGLRGNRIHAIVRELSNENIDVIEWSDDPRELIKRALTPARPLSVTLNEE 304 Query: 305 VG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 R +V+V +++S AIGR G N+RLAS+LTG+ +D+ E Sbjct: 305 ANPPRAKVVVRADEVSQAIGRGGVNIRLASRLTGYELDVYRE 346 >gi|332295450|ref|YP_004437373.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796] gi|332178553|gb|AEE14242.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 340 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 132/337 (39%), Positives = 218/337 (64%), Gaps = 2/337 (0%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + + + EK + ++S + ++ + + Y + ++ ++I P+TG + + VV Sbjct: 5 LHVLEQLEKEKGVSLPAMISALESALLASYKKYYPS-KNVSLKIIPDTGVLEIVVKKTVV 63 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++V N +ISL AR+ DP ++IG + + P +FGR+A +AKQV QK++EAERD Sbjct: 64 DKVNNIFDEISLTQAREIDPKVNIGETIEIQVDPKNFGRIAALTAKQVWQQKIKEAERDA 123 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + EFKD+V +ISG + R E N IV LG ++G++ + ET+ ++ +R Y+ V Sbjct: 124 VFEEFKDRVFGVISGKILRPEGKNWIVQLGRAEGILPQKETVFQDKYNINERYVFYVLSV 183 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 +++++ +++LSR+HP + ++F +E EI +GIV++ +++RDPGSR K+AV S D +D Sbjct: 184 KKQKKDVEIILSRSHPNLVKRIFELESAEIRSGIVEIVSIARDPGSRTKIAVLSRDPHVD 243 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P+G C+G+R SR+Q V ELR EKID+++++PD ++ +AL PA + +V +LD+ Sbjct: 244 PLGVCLGIRNSRIQNVTKELRGEKIDVILYNPDPKIYIASALSPAKIKRVEILDQVKKES 303 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V K QLSLAIG+ QNVRLA +LTG+ IDI EE Sbjct: 304 RVYVDKSQLSLAIGKDAQNVRLAHKLTGYKIDIKIEE 340 >gi|294101966|ref|YP_003553824.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261] gi|293616946|gb|ADE57100.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261] Length = 362 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/327 (40%), Positives = 218/327 (66%), Gaps = 5/327 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 E+ + +V+ S + ++ A + G ++ V I+ E+G++S++ + VV+EV+N Q Sbjct: 17 ERGLTSEVIASSLEAALISAYKKYQGGDRNVEVHIDLESGNVSIYEVRLVVDEVDNPDAQ 76 Query: 79 ISL-KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ISL V + +++ V P +FGR+A Q+A+QVIIQK+++AER + EF + Sbjct: 77 ISLIDVQKLGFTDVEVNEYVRIEKNPENFGRIAAQTARQVIIQKLKDAERQIIFEEFSGR 136 Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++++G + + E V+V L + ++ ++ ++E + E PG+R+K Y+ DVR+ RGP Sbjct: 137 VGDLVNGIIFKSENDQVLVRLNDRTEAILPKEERVINEKYTPGERLKFYLLDVRQTTRGP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRTHP + KL +EVPEI GI+++K++ R+ G+RAK+AV + D ++DPVGACVG Sbjct: 197 RIVVSRTHPGLLRKLLELEVPEIQEGIIEIKSIVREAGTRAKVAVQTLDINVDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRIEVIVPK 314 G+R++++ EL EKID+++WS D FV N+L PA + K+ +L++D + V Sbjct: 257 NNGARIKSISQELSGEKIDVIIWSSDPLIFVRNSLSPAKIVKIEPILEQDKA-VTVYARP 315 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++LT W IDI Sbjct: 316 DQLSLAIGKAGQNVRLAARLTSWKIDI 342 >gi|282889767|ref|ZP_06298306.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500341|gb|EFB42621.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 424 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 152/420 (36%), Positives = 248/420 (59%), Gaps = 14/420 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I + + EK I R++V++ + +S++ AA+ S++ V INP++G+I ++ E Sbjct: 4 DLIAIFEYLEREKGIKRNIVVAAIEESLRAAAKKSISGASNVTVTINPKSGNIDVYCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEVE +ISL+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R AER Sbjct: 64 IVEEVEVEAQEISLQDAREIDPDCEIGQFIDVVATPKDFGRIAAQKARQIITQKLRNAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + E+ISGT+KR G NV++DLG + ++ E G++V + + Sbjct: 124 DVIYEEYRHRTNELISGTIKRFVRGSNVVIDLGKVEAIMPTKHYPKTEKYHVGEKVLALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V E G +V+LSR+HP+F+ +L EVPE+ +GIV + + R+ G R K+ V S+D Sbjct: 184 YEVNETENGGAEVVLSRSHPEFVKQLMMQEVPELNDGIVVIDRIVREAGYRTKMTVRSTD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S IDPVG+CVGMRG RV+ VV EL +EKIDI+ +S D + NAL P + KV ++ED Sbjct: 244 SKIDPVGSCVGMRGIRVKNVVRELNNEKIDIIPYSQDPVELLQNALDPIEIRKVSVNEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI----------ITEEEDSINRQKDF 355 I ++V + IG++G N RL SQL G+ +++ E + Q+ + Sbjct: 304 KTISIVVDDADFAAVIGKKGMNARLNSQLIGYELEVQRMAEYNHAMAVERSELATSQEPW 363 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ ++ +N +I L+AEG++ + ++A++ G E A +I + R+ Sbjct: 364 LDKPLKNIEGVNT--LIFEHLIAEGYSTPRAILTAAPEKLATVPGISIELADKILEQIRK 421 >gi|293400740|ref|ZP_06644885.1| N utilization substance protein A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305766|gb|EFE47010.1| N utilization substance protein A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 559 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 136/333 (40%), Positives = 216/333 (64%), Gaps = 4/333 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFRLLEVVEEV 72 A+ ++ + ++VV+ + +++ KA R + + D +RV++N +TG+I +++ +VE V Sbjct: 12 AIESDRKLPQEVVVEALQEALAKAFRK-HIEIPDALVRVDVNEKTGNIKVYQQRTIVETV 70 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 E+ +ISL+ A+ + +++ GVV + + GR AV AK V+ QK+REAE+ Y Sbjct: 71 EDDELEISLEDAKKINQELELDGVVEEEVDITQLGRAAVILAKNVMKQKIREAEKLIVYE 130 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+ DKV E++ GT++ VE IV++G + ++ +++ I E GDR++ I +V +E Sbjct: 131 EYCDKVDEMVVGTIESVEEKFCIVNIGKTLALMPKNQQIPNERYHEGDRIRVVIIEVNKE 190 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +G QVL+SR + +LF EVPEI+ G++++KA++R+ G R K+AV+S + +IDP+G Sbjct: 191 TKGAQVLVSRGDATLVKRLFEKEVPEIFQGVIEIKAIAREAGERTKMAVYSHNENIDPIG 250 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VGRIEVI 311 AC+G RG RVQ ++ EL EKIDI WS D A + NAL PA V V+ E+ G + V+ Sbjct: 251 ACIGPRGQRVQVIINELGGEKIDIFEWSEDVAELIKNALSPAEVLAVIPSEERKGGLLVV 310 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VP QLSLAIG+RG+N RLA +LTG IDI E Sbjct: 311 VPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAE 343 >gi|325856510|ref|ZP_08172199.1| transcription termination factor NusA [Prevotella denticola CRIS 18C-A] gi|327313033|ref|YP_004328470.1| transcription termination factor NusA [Prevotella denticola F0289] gi|325483479|gb|EGC86452.1| transcription termination factor NusA [Prevotella denticola CRIS 18C-A] gi|326944462|gb|AEA20347.1| transcription termination factor NusA [Prevotella denticola F0289] Length = 421 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 135/328 (41%), Positives = 209/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV EVE+ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + V+ VD N++ ++ +DE I R+ R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKDEQIPRDQYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRE 351 >gi|256371439|ref|YP_003109263.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008023|gb|ACU53590.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 330 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 139/342 (40%), Positives = 211/342 (61%), Gaps = 30/342 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ + +A EK + + +L +A+++ A + G + VEI+P +G I + Sbjct: 7 EVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIRVI---- 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVREA 125 CQ +D G V P DFGR+A Q+AKQV++QK+REA Sbjct: 63 ---------CQ-----------ELDENGTVVREWEDTPRDFGRIAAQAAKQVMLQKIREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+++Y E+ + G++++G V +++ ++DLG + ++ E+ S E R+K+Y Sbjct: 103 EREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGKIEAIMPHSESPSNERYSVNQRLKAY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VRR +GPQ+++SRTHP + +LF +EVPEI +G+V+VKA++R+PG R K+AV+S+D Sbjct: 163 IVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAVWSND 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+DPVGACVG RGSRV VV EL EK+DIV +S D A FV A+ PA ++ Sbjct: 223 RSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATVE--- 279 Query: 306 GR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 GR V+VP +QLSLAIGR GQN RLA++LTG ++I + E Sbjct: 280 GRDALVVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSE 321 >gi|255348459|ref|ZP_05380466.1| transcription elongation factor NusA [Chlamydia trachomatis 70] gi|255503001|ref|ZP_05381391.1| transcription elongation factor NusA [Chlamydia trachomatis 70s] Length = 434 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/421 (35%), Positives = 243/421 (57%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F + Sbjct: 4 DLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SSD Sbjct: 184 YEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + ED Sbjct: 244 PQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DFNE-R 358 I +IV + IG+RG N RL SQ+ G+ +++ ++E + Q+ +F + R Sbjct: 304 KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFEDPR 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y E Sbjct: 364 LDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKYGE 423 Query: 419 G 419 G Sbjct: 424 G 424 >gi|94985335|ref|YP_604699.1| transcription elongation factor NusA [Deinococcus geothermalis DSM 11300] gi|94555616|gb|ABF45530.1| NusA antitermination factor [Deinococcus geothermalis DSM 11300] Length = 395 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 132/336 (39%), Positives = 212/336 (63%), Gaps = 4/336 (1%) Query: 10 LQIADA---VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ADA VA ++I+ ++ S+ +A + V ++P +G++ + + Sbjct: 6 FNFADALREVAQARNINELQLIEAFEQSLAQAYSRNVEPDRRVEVHLDPVSGELEVLIVR 65 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE+VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE E Sbjct: 66 EVVEKVEDENLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+KD+ G++++ V R + GN V+LG + ++ E I E L PG+RVK Y Sbjct: 126 RNVVYNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLVPGNRVKIY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +GP +L SR + + L E+PE+ NGIV++KA++R+ G R+K+AV+S + Sbjct: 186 LKEVRKTPKGPTILASRADERLLEYLLRQEIPEVANGIVEIKAIAREAGQRSKVAVYSHN 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DP+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D Sbjct: 246 PNVDPIGACIGHRGNRIQAVTGELGRERVDVILWDANARDFIRNALSPAKVGLIEVRPDT 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ Sbjct: 306 REATVTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDL 341 >gi|332830404|gb|EGK03032.1| transcription termination factor NusA [Dysgonomonas gadei ATCC BAA-286] Length = 420 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 212/325 (65%), Gaps = 3/325 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ DS + L+G+ + V INP+ GD+ ++R +VE E+E+ Sbjct: 20 KNIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEIWRNRTIVEDSELEDENT 79 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D ++G V+D + DFGR A+ + +Q + K+ E +++ Y +K+K Sbjct: 80 QISLTEARKIDEDFEVGEDVTDEVFFEDFGRRAILNLRQTLTSKILELQKEGLYNRYKEK 139 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +GEI+SG V ++ +++ D + ++ + E I + R G+ V++ + V + P Sbjct: 140 IGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKGEHVRAVVERVENKNNNP 199 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 200 KIILSRTSPVFLERLLEIEVPEINDGLITIKNIARIPGERAKVAVESYDDRIDPVGACVG 259 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V ELR+E IDI+ ++P+ + ++ AL PA +T V L+E+ R EV++ E+ Sbjct: 260 MKGSRIHGIVRELRNENIDIINYTPNMSLYIQRALSPAKITSVKLNEEEKRAEVLLRPEE 319 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI 341 +SLAIG+ G N++LAS LTG+TID+ Sbjct: 320 VSLAIGKGGFNIKLASMLTGYTIDV 344 >gi|320449995|ref|YP_004202091.1| transcription termination factor NusA [Thermus scotoductus SA-01] gi|320150164|gb|ADW21542.1| transcription termination factor NusA [Thermus scotoductus SA-01] Length = 387 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 215/348 (61%), Gaps = 12/348 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA---RSLY-------GTMSDIRVEIN 54 NR E + +A E+ + + VL ++++KA + Y G ++ V I+ Sbjct: 2 NR-EFIDAMQQLALERGVTTEEVLEAFKEALRKAYIKRQKGYRKEEIDAGKGPEVDVYID 60 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 P+TG I + + VVE+VE+ +I+L A DP + +G + P+ P R+A+Q Sbjct: 61 PQTGRIEMVEVRRVVEKVEDPDKEIALSEALQYDPEVQVGDEMEFPIDPEGLSRMAIQDL 120 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISR 173 +Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + + E I Sbjct: 121 RQILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPKSEQIPT 180 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E PG R+K Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+P Sbjct: 181 ERYYPGQRLKVYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREP 240 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R+K+AV + + ++DP+GAC+G +G R+QAV EL EK+DI++W+ D F+ NAL P Sbjct: 241 GRRSKVAVMTHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWAKDPKEFIRNALSP 300 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V + L+ D + V V K+Q SLAIG GQNVRLAS+LTG+ I Sbjct: 301 AQVGSIELEPDGQKARVKVTKDQHSLAIGTGGQNVRLASKLTGYEIHF 348 >gi|295098916|emb|CBK88005.1| transcription termination factor NusA [Eubacterium cylindroides T2-87] Length = 545 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 138/329 (41%), Positives = 211/329 (64%), Gaps = 6/329 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGT---MSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 DR + ++ D++++A Y + D VE+ E G I ++ +VVE+VE+ +I Sbjct: 18 DRQLSSEIVEDALREALTKAYRKHIEIPDAYVEVVIEDGIIHIYHQRKVVEDVEDDELEI 77 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 SL+ AR + +I + V++ + F R AV AK V+ QK+REAE+ + Y E+ DK+ Sbjct: 78 SLEDARKVNKNIQLDDFVNEEVDFTTFDRAAVVLAKNVMKQKIREAEKAQVYEEYCDKLD 137 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 E++ G V+ VE VIV++G + ++++ + I E G ++ I +V +E +G QVL Sbjct: 138 EMVLGVVETVEEKFVIVNIGKTLAMLKKSQQIPTEKYYEGQKLLVVITEVNKETKGAQVL 197 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 +SR P F+ +LF EVPEIYNGI+++KA++RDPG R K+AV+S + +IDP+GAC+G RG Sbjct: 198 VSRATPVFVRRLFEREVPEIYNGIIEIKAIARDPGERCKIAVYSHNENIDPIGACIGPRG 257 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQL 317 SRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E+V G I V+VP QL Sbjct: 258 SRVQTIINELNGEKIDIFEWSDNISELIENALSPSEAVAVIPNENVKDGLI-VVVPDSQL 316 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEE 346 SLAIG+RG+N RLA +L+ IDI +E E Sbjct: 317 SLAIGKRGKNARLAVKLSNRKIDIKSESE 345 >gi|260654723|ref|ZP_05860211.1| transcription termination factor NusA [Jonquetella anthropi E3_33 E1] gi|260630438|gb|EEX48632.1| transcription termination factor NusA [Jonquetella anthropi E3_33 E1] Length = 358 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 223/345 (64%), Gaps = 5/345 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+ ++ ++A E ++ DV+++ + ++ A R ++ V +N ETG++ ++ + Sbjct: 5 LDCIRALKSLAEESNLSEDVIVASLEAALGAAYRKYREGTTEPEVHLNRETGEVEIYDVR 64 Query: 67 EVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123 E T +I+ A S + G +V P+ P FGR+A Q+A+QVIIQ+++ Sbjct: 65 RTTENPVAGTSEITQAEAAQMGYSDVQPGDLVRVPVYVHPEKFGRIAAQTARQVIIQRLK 124 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +AER+ + EF +K+G+++ G V R E V++ +G S+ +++R+E I E G R+ Sbjct: 125 DAEREVVFNEFSEKIGDLVLGEVIRSENDQVLIHIGERSEALLQREERIPNEKYDIGMRL 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + ++ DVR+ RGP+++LSRTHP + +L +E+PEI +G V++K + R+ G+RAK+AV Sbjct: 185 RFFLLDVRQTTRGPRIVLSRTHPGLLRRLMELEIPEIADGTVEIKGIVREAGARAKVAVA 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D S+DP+GACVG G+R++++ +EL +EKIDIV+W D T+V N+L PA K+ L Sbjct: 245 TTDPSVDPLGACVGASGARIRSISSELCEEKIDIVLWDEDPLTYVKNSLSPATPVKIELV 304 Query: 303 EDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R + V V +QLSLAIG+ GQNVRLA++LTGW +DI + E+ Sbjct: 305 PDAERSVRVFVKPDQLSLAIGKTGQNVRLAARLTGWKLDIQSSEK 349 >gi|166154318|ref|YP_001654436.1| transcription elongation factor NusA [Chlamydia trachomatis 434/Bu] gi|166155193|ref|YP_001653448.1| transcription elongation factor NusA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335569|ref|ZP_07223813.1| transcription elongation factor NusA [Chlamydia trachomatis L2tet1] gi|2160697|gb|AAB58904.1| NusA [Chlamydia trachomatis] gi|165930306|emb|CAP03792.1| N utilization substance protein A [Chlamydia trachomatis 434/Bu] gi|165931181|emb|CAP06746.1| N utilization substance protein A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 434 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/421 (35%), Positives = 243/421 (57%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F + Sbjct: 4 DLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SSD Sbjct: 184 YEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + ED Sbjct: 244 PQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DFNE-R 358 I +IV + IG+RG N RL SQ+ G+ +++ ++E + Q+ +F + R Sbjct: 304 KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFEDPR 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y E Sbjct: 364 LDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKYGE 423 Query: 419 G 419 G Sbjct: 424 G 424 >gi|302872115|ref|YP_003840751.1| transcription termination factor NusA [Caldicellulosiruptor obsidiansis OB47] gi|302574974|gb|ADL42765.1| transcription termination factor NusA [Caldicellulosiruptor obsidiansis OB47] Length = 356 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/342 (39%), Positives = 210/342 (61%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I+RD + SV+ ++ A + + G +S+++V I PE G + ++ Sbjct: 12 ELFSAIDELEREYKIERDYIYSVLESALLTAYKQVKGIKDKNLSNVKVSIEPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +ISL+ A+ D +G +V +P F R A + +Q +I K+R Sbjct: 72 EYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVVIEVPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E + + ++ KV I++G ++R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKRKSIIFEDYSSKVDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGVM 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K YI +V+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|302344943|ref|YP_003813296.1| transcription termination factor NusA [Prevotella melaninogenica ATCC 25845] gi|302149887|gb|ADK96149.1| transcription termination factor NusA [Prevotella melaninogenica ATCC 25845] Length = 409 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 209/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV EVE+ Sbjct: 12 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 71 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 72 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 131 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + V+ VD N++ ++ + E I R+ R G+ V++ I+ V E P Sbjct: 132 VGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAVIHRVDNENNNP 191 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 192 KIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 251 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 252 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 311 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 312 VSLAIGRGGMNIKLASMLTGYTIDVFRE 339 >gi|184155206|ref|YP_001843546.1| transcription termination-antitermination factor NusA [Lactobacillus fermentum IFO 3956] gi|260662294|ref|ZP_05863190.1| transcription termination factor NusA [Lactobacillus fermentum 28-3-CHN] gi|183226550|dbj|BAG27066.1| transcription termination-antitermination factor NusA [Lactobacillus fermentum IFO 3956] gi|260553677|gb|EEX26569.1| transcription termination factor NusA [Lactobacillus fermentum 28-3-CHN] Length = 408 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 216/362 (59%), Gaps = 25/362 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 +R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++ Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 + ER+ + ++ +++ G V R + + V+LG+ + + + + + E+ R DR+ Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185 Query: 183 KSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+ Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305 Query: 301 LDEDVGRIE---------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE+ G ++ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I Sbjct: 306 FDENNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365 Query: 340 DI 341 DI Sbjct: 366 DI 367 >gi|227514704|ref|ZP_03944753.1| transcription termination factor NusA [Lactobacillus fermentum ATCC 14931] gi|227086908|gb|EEI22220.1| transcription termination factor NusA [Lactobacillus fermentum ATCC 14931] gi|299783112|gb|ADJ41110.1| Transcription termination factor NusA [Lactobacillus fermentum CECT 5716] Length = 408 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 216/362 (59%), Gaps = 25/362 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 +R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++ Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 + ER+ + ++ +++ G V R + + V+LG+ + + + + + E+ R DR+ Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185 Query: 183 KSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+ Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305 Query: 301 LDEDVGRIE---------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE+ G ++ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I Sbjct: 306 FDENNGEVDEPASVDENGRKHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365 Query: 340 DI 341 DI Sbjct: 366 DI 367 >gi|288801646|ref|ZP_06407088.1| transcription termination factor NusA [Prevotella melaninogenica D18] gi|288335688|gb|EFC74121.1| transcription termination factor NusA [Prevotella melaninogenica D18] Length = 421 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 209/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV EVE+ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + V+ VD N++ ++ + E I R+ R G+ V++ I+ V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAVIHRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTVDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRE 351 >gi|295102730|emb|CBL00275.1| transcription termination factor NusA [Faecalibacterium prausnitzii L2-6] Length = 373 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/351 (41%), Positives = 214/351 (60%), Gaps = 8/351 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59 M +AN E + + +E+ I + ++ + +I A + Y D + VEI+P TG Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDHVMVEIDPNTGK 59 Query: 60 ISLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 ++ + +VV + + Y +I + A+ S +G V PL DFGR+A Q+AK V Sbjct: 60 FNVALIQDVVADEDWYDEHSEIGITEAQHIRKSYQVGDRVVTPLKTKDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRE 174 I Q +REAER +Q E + + +I+ TV RV E G V +DLG + ++ R+E + E Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPRNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G ++ YI DV +RGP+V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G Sbjct: 180 VYTEGQMLQVYIVDVVASERGPRVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D++++PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDANVNPVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V KV +L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPE 350 >gi|227892601|ref|ZP_04010406.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM 16047] gi|227865586|gb|EEJ73007.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM 16047] Length = 413 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 211/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 19 EMLEAFATLEKTKGIKQDVIIDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 78 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 79 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 138 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + +S E P D+++ + Sbjct: 139 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMSNEVYNPQDQIRVLVT 198 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 199 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 258 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 259 IDPVGTCVGQKGTRVQNVVNELGGENIDIVKYEDDPSDFIANALNPAEVIAVQFGEDEDE 318 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 319 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 359 >gi|15604816|ref|NP_219600.1| transcription elongation factor NusA [Chlamydia trachomatis D/UW-3/CX] gi|76788811|ref|YP_327897.1| transcription elongation factor NusA [Chlamydia trachomatis A/HAR-13] gi|237802529|ref|YP_002887723.1| transcription elongation factor NusA [Chlamydia trachomatis B/Jali20/OT] gi|255310899|ref|ZP_05353469.1| transcription elongation factor NusA [Chlamydia trachomatis 6276] gi|255317199|ref|ZP_05358445.1| transcription elongation factor NusA [Chlamydia trachomatis 6276s] gi|255506672|ref|ZP_05382311.1| transcription elongation factor NusA [Chlamydia trachomatis D(s)2923] gi|3328493|gb|AAC67688.1| Transcription antitermination factor [Chlamydia trachomatis D/UW-3/CX] gi|76167341|gb|AAX50349.1| N utilization substance protein A [Chlamydia trachomatis A/HAR-13] gi|231273763|emb|CAX10544.1| N utilization substance protein A [Chlamydia trachomatis B/Jali20/OT] gi|289525141|emb|CBJ14613.1| N utilization substance protein A [Chlamydia trachomatis Sweden2] gi|296434685|gb|ADH16863.1| transcription elongation factor NusA [Chlamydia trachomatis E/150] gi|296435614|gb|ADH17788.1| transcription elongation factor NusA [Chlamydia trachomatis G/9768] gi|296436537|gb|ADH18707.1| transcription elongation factor NusA [Chlamydia trachomatis G/11222] gi|296437474|gb|ADH19635.1| transcription elongation factor NusA [Chlamydia trachomatis G/11074] gi|296438402|gb|ADH20555.1| transcription elongation factor NusA [Chlamydia trachomatis E/11023] gi|297139973|gb|ADH96731.1| transcription elongation factor NusA [Chlamydia trachomatis G/9301] Length = 434 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 149/421 (35%), Positives = 242/421 (57%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F + Sbjct: 4 DLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SS+ Sbjct: 184 YEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + ED Sbjct: 244 PQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DFNE-R 358 I +IV + IG+RG N RL SQ+ G+ +++ ++E + Q+ +F + R Sbjct: 304 KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFEDPR 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y E Sbjct: 364 LDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKYGE 423 Query: 419 G 419 G Sbjct: 424 G 424 >gi|327183772|gb|AEA32219.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1118] Length = 395 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 344 >gi|330444480|ref|YP_004377466.1| transcription termination factor NusA [Chlamydophila pecorum E58] gi|328807590|gb|AEB41763.1| transcription termination factor NusA [Chlamydophila pecorum E58] Length = 435 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 148/422 (35%), Positives = 243/422 (57%), Gaps = 10/422 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++S + +++ AA+ ++I V INP TGDI +F E Sbjct: 4 DLIAIFDYMEKEKGIQRTTIISAIESALKIAAKKTLRDDANISVNINPRTGDIEVFCEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+ N + +I L AR+ DP +IG + P +FGR+A +A+Q+I QK+R AER Sbjct: 64 IVDFCNNPSKEIPLDKAREFDPDCEIGQYMDVPFVSENFGRIAAHTARQIIGQKLRYAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ +V EI+SG VKR V+ N+I+DLG + ++ E + GD++ + + Sbjct: 124 DVIYEEYRHRVNEILSGVVKRFVKGSNLIIDLGKVEAILPARFYPKTEKHKIGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ + G +V+LSR+HP+F+ +LF EVPE+ G+V + ++R+PG R KLAV SSD Sbjct: 184 YEVQELDNGGAEVILSRSHPEFVKQLFLQEVPELEEGVVSIVKIAREPGYRTKLAVSSSD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 DPVGA VGMRG+RV+ ++ EL DEKIDIV +S + N L P + K+ + ED Sbjct: 244 FKTDPVGAFVGMRGARVKNIIRELNDEKIDIVNYSSTPTELLQNLLYPIEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK------DFNE 357 I ++V + IG+RG N RL SQ+ + +++ ++E + Q+ D + Sbjct: 304 KVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDSPQ 363 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q + + +++ L G+ + ++ S+++S+ G E A +I + +Y Sbjct: 364 LDQPLQEIEGISKLVIQNLEHAGYDTIRKVLLASASDLSSVPGIGLELAYKILEQVSKYG 423 Query: 418 EG 419 EG Sbjct: 424 EG 425 >gi|297748226|gb|ADI50772.1| N utilization substance protein A [Chlamydia trachomatis D-EC] gi|297749106|gb|ADI51784.1| N utilization substance protein A [Chlamydia trachomatis D-LC] Length = 465 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 149/421 (35%), Positives = 242/421 (57%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F + Sbjct: 35 DLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQ 94 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 95 IVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAER 154 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + + Sbjct: 155 DVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALL 214 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SS+ Sbjct: 215 YEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSN 274 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + ED Sbjct: 275 PQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD 334 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DFNE-R 358 I +IV + IG+RG N RL SQ+ G+ +++ ++E + Q+ +F + R Sbjct: 335 KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFEDPR 394 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y E Sbjct: 395 LDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKYGE 454 Query: 419 G 419 G Sbjct: 455 G 455 >gi|300812554|ref|ZP_07092971.1| transcription termination factor NusA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496427|gb|EFK31532.1| transcription termination factor NusA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 403 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/343 (42%), Positives = 215/343 (62%), Gaps = 5/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV--IRRDETISRENLRPGDRVKSY 185 E+ E+++GTV+R + V V++GN + V I+RD TI E+ P DRV+ Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRD-TIPGEHYNPQDRVRVL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 183 VTKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSND 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V DED Sbjct: 243 PNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDED 302 Query: 305 VGRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 303 DERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 345 >gi|237804446|ref|YP_002888600.1| transcription elongation factor NusA [Chlamydia trachomatis B/TZ1A828/OT] gi|231272746|emb|CAX09650.1| N utilization substance protein A [Chlamydia trachomatis B/TZ1A828/OT] Length = 434 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 149/421 (35%), Positives = 242/421 (57%), Gaps = 9/421 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F + Sbjct: 4 DLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEKCQNPSKEIPLDEAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SS+ Sbjct: 184 YEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + ED Sbjct: 244 PQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DFNE-R 358 I +IV + IG+RG N RL SQ+ G+ +++ ++E + Q+ +F + R Sbjct: 304 KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFEDPR 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y E Sbjct: 364 LDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKYGE 423 Query: 419 G 419 G Sbjct: 424 G 424 >gi|313124031|ref|YP_004034290.1| transcription elongation factor nusa [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280594|gb|ADQ61313.1| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685946|gb|EGD28009.1| N utilization substance protein A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 383 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/343 (42%), Positives = 215/343 (62%), Gaps = 5/343 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV--IRRDETISRENLRPGDRVKSY 185 E+ E+++GTV+R + V V++GN + V I+RD TI E+ P DRV+ Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRD-TIPGEHYNPQDRVRVL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 183 VTKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSND 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V DED Sbjct: 243 PNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDED 302 Query: 305 VGRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 303 DERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 345 >gi|315038575|ref|YP_004032143.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1112] gi|312276708|gb|ADQ59348.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1112] Length = 395 Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 344 >gi|284044673|ref|YP_003395013.1| NusA antitermination factor [Conexibacter woesei DSM 14684] gi|283948894|gb|ADB51638.1| NusA antitermination factor [Conexibacter woesei DSM 14684] Length = 503 Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 219/362 (60%), Gaps = 24/362 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A EK+I + ++ + D++ A + G +VE++ E GD +++ L + Sbjct: 4 EILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVWEL-K 62 Query: 68 VVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLP--------------------PMD 105 + E++E+ T Q + A + G P P P D Sbjct: 63 IPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEYEDQIERVDVTPED 122 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGV 164 FGR+A Q+AKQVI+Q++REAERD + E++D+VGE+I+G V++ + +V L + + Sbjct: 123 FGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERVEAL 182 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 + + E + E R+K+ I DV +GP +++SR P+ + LF +EVPEI +G+V Sbjct: 183 LPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIADGLV 242 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++ V+R+PG R+K+AV S +DPVGACVG RGSRV+ VV+ELR EKIDI+ ++ + A Sbjct: 243 EITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYNDEPA 302 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV AL PA V +V++D+D + VIVP +QLSLAIGR GQN RLA++LTGW IDI +E Sbjct: 303 RFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDIRSE 362 Query: 345 EE 346 E Sbjct: 363 TE 364 >gi|325957049|ref|YP_004292461.1| transcription elongation factor NusA [Lactobacillus acidophilus 30SC] gi|325333614|gb|ADZ07522.1| transcription elongation factor NusA [Lactobacillus acidophilus 30SC] Length = 395 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYKQAQNVEVDFDERKGDFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 344 >gi|194467745|ref|ZP_03073731.1| NusA antitermination factor [Lactobacillus reuteri 100-23] gi|194452598|gb|EDX41496.1| NusA antitermination factor [Lactobacillus reuteri 100-23] Length = 393 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 218/370 (58%), Gaps = 25/370 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 9 EMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYGD-KNVEVEFNSLTGNIKVYAVKT 67 Query: 68 VVEEVENYTCQ----ISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + ++ E +SL AR DIG + + + P DFGR+A Q+AKQV++Q+ Sbjct: 68 ITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVMQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ D Sbjct: 128 LREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHVHD 187 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+A Sbjct: 188 RIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVA 247 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ Sbjct: 248 VYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVI 307 Query: 301 LDED-----------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +ED V+VP QLSLAIG+RGQN RLA++LT + IDI + Sbjct: 308 FNEDKPASENEESEETTEGQTERSCTVVVPDNQLSLAIGKRGQNARLAARLTKYKIDIKS 367 Query: 344 EEEDSINRQK 353 E E + N Q+ Sbjct: 368 ESEMAENDQE 377 >gi|326799022|ref|YP_004316841.1| NusA antitermination factor [Sphingobacterium sp. 21] gi|326549786|gb|ADZ78171.1| NusA antitermination factor [Sphingobacterium sp. 21] Length = 411 Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 215/333 (64%), Gaps = 5/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R +GT + V +NP+ GD+ ++R VVE+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMIRKRFGTDENCDVIVNPDNGDLEIWRTRTVVEDEFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L AR DP ++IG + + FGR A+ +A+Q ++ KV E E+D + ++KD+ Sbjct: 77 EIELAEARKVDPDLEIGDDFIEEITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGEI++G V ++ +V D GN + ++ + E I + + GD +++ +Y V Sbjct: 137 VGEIVTGEVYQIWKKETLVLDDEGN-ELILPKTEQIPADYFKKGDTIRAVVYKVDMMNTT 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACV Sbjct: 196 PKIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + LD++ R V + + Sbjct: 256 GMKGSRIHGIVRELRNENIDVINFTNNISLYIQRALSPARISSIKLDDEEKRAAVYLQSD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 Q+SLAIGR G N++LA +LTG+ ID+ E +++ Sbjct: 316 QVSLAIGRGGHNIKLAGKLTGYEIDVYRESDEN 348 >gi|325269683|ref|ZP_08136296.1| N utilization substance protein A [Prevotella multiformis DSM 16608] gi|324988051|gb|EGC20021.1| N utilization substance protein A [Prevotella multiformis DSM 16608] Length = 421 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 134/328 (40%), Positives = 208/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV EVE+ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QISLTDARKIEDDYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + V+ VD N++ ++ + E I R+ R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRE 351 >gi|160943264|ref|ZP_02090500.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii M21/2] gi|158445503|gb|EDP22506.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii M21/2] gi|295105168|emb|CBL02712.1| transcription termination factor NusA [Faecalibacterium prausnitzii SL3/3] Length = 368 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 146/351 (41%), Positives = 220/351 (62%), Gaps = 8/351 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETG- 58 M +AN+ + + + +E+ I + ++ + +I A + Y D IRV+I+P+TG Sbjct: 1 MTAANK-DFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHIRVDIDPDTGR 59 Query: 59 -DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 D++L + + E+ + +I + AR S ++G + PL DFGR+A Q+AK V Sbjct: 60 FDVALIQDIVADEDWYDEHAEIGVTEARKIRSSYEVGDRIITPLKTRDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRE 174 I Q +REAER++Q E + + +I+ TV RV E G V +DLG + V+ R+E + E Sbjct: 120 IRQGIREAERNQQLSEIQSRAHDIVQATVTRVDTEKGIVALDLGKGGEAVLPRNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G+ ++ YI DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G Sbjct: 180 VYTEGETLQVYIVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V KV +L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPE 350 >gi|323343775|ref|ZP_08084002.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269] gi|323095594|gb|EFZ38168.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269] Length = 421 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 134/335 (40%), Positives = 212/335 (63%), Gaps = 6/335 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV EV + Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRMVVADGEVADENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+LK A+ +P +IG VS+P+ FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EIALKEAQKIEPDYEIGEEVSEPVNFAKFGRRAILNLRQTLASKVLELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V ++ V +VD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQVISGEVYQIWKREVLVVDDENNELILPKSEQIPSDQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA VT + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVTSITVDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTID---IITEEEDS 348 +SLAIGR G N++LAS LT +TID ++ E ED+ Sbjct: 324 VSLAIGRSGLNIKLASMLTEFTIDVFRVLDENEDN 358 >gi|148543928|ref|YP_001271298.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016] gi|184153324|ref|YP_001841665.1| transcription termination-antitermination factor [Lactobacillus reuteri JCM 1112] gi|227364837|ref|ZP_03848884.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3] gi|325682537|ref|ZP_08162054.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A] gi|148530962|gb|ABQ82961.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016] gi|183224668|dbj|BAG25185.1| transcription termination-antitermination factor [Lactobacillus reuteri JCM 1112] gi|227070100|gb|EEI08476.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3] gi|324978376|gb|EGC15326.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A] Length = 395 Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 218/372 (58%), Gaps = 27/372 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 9 EMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYGD-KNVEVEFNSLTGNIKVYAVKT 67 Query: 68 VVEEVENYTCQ----ISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + ++ E +SL AR DIG + + + P DFGR+A Q+AKQV++Q+ Sbjct: 68 ITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVMQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +RE ER Y +K EII+G V R + VDLG+ +G + + + E+ D Sbjct: 128 LREEERKIIYDRYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHVHD 187 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+A Sbjct: 188 RIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVA 247 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ Sbjct: 248 VYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVI 307 Query: 301 LDEDVGRIE-------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +E+ E V+VP QLSLAIG+RGQN RLA++LT + IDI Sbjct: 308 FNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKIDI 367 Query: 342 ITEEEDSINRQK 353 +E E + N Q+ Sbjct: 368 KSESEMAENDQE 379 >gi|330718231|ref|ZP_08312831.1| transcription elongation factor NusA [Leuconostoc fallax KCTC 3537] Length = 375 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/344 (40%), Positives = 216/344 (62%), Gaps = 5/344 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 EL+ DA+ E+ IDR +V+ + ++ A + + T S++ V N G I++ ++ Sbjct: 4 ELVDALDALENERGIDRQIVVDALELALAAAYKKQFNATQSNVDVTFNDRNGSITIKQIK 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV E+ E+ +I L A + + + G + + P +FGR+A Q+AKQVI+QK+RE Sbjct: 64 TVVLDEDFEDEVIEIPLSEALAINRAYEAGDEIRFDVTPKNFGRIAAQTAKQVIMQKLRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 A R+ Y +F + EII+G V+R + + V L GN + V+ +++ + E+ R DR+K Sbjct: 124 AGREAIYKKFSEYQDEIITGEVERQDARFLYVMLPGNQEAVMAQNDQMPNEHYRMHDRIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V +GPQ+ +SR + +LF EVPE+Y+G V++ +++R+ G R+K+AV++ Sbjct: 184 VLVSKVENSPKGPQIFVSRAAEDLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD- 302 DS +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D Sbjct: 244 HDSDLDPVGALVGQRGTRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVVDVIFDP 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 E+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 304 ENNHAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESE 347 >gi|325677914|ref|ZP_08157556.1| transcription termination factor NusA [Ruminococcus albus 8] gi|324110468|gb|EGC04642.1| transcription termination factor NusA [Ruminococcus albus 8] Length = 372 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 148/355 (41%), Positives = 215/355 (60%), Gaps = 29/355 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV--- 68 +AD V+ E IDR+V++ + D+I KA + G+ ++RV+I+P TG + ++ L EV Sbjct: 9 LADLVS-ENEIDREVLIEKIRDAITKAIKKETGS-ENVRVDIDPATGKLEMYILKEVMKV 66 Query: 69 --VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V+E EN +I + A+ DP I +G V P+ P GRVA Q AKQ I +++ E Sbjct: 67 MFVDEPEN---EIYIGEAQAYDPDIKVGDFVEIPVNPAKIGRVAAQFAKQSIKHDIKDFE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 R++ ++KD+ EI++ TV++VE GN I+ + ++ R E I E L+ GD++K Sbjct: 124 RNKLIEQYKDREHEIVTATVQKVEPATGNAIITIDKNEHYFYRSEQIPGEVLKEGDKIKV 183 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI + E+R P V LSRTH + +LF +EVPEI +G V+VKA+SR G R+K+AV+S Sbjct: 184 YIVSLGDSEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEVKAISRTEGVRSKIAVWS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D ++D VGAC+G + SR+ AV EL+ EKID++ W D F+ AL PA V KV L E Sbjct: 244 KDPNVDAVGACIGPKKSRITAVCQELKGEKIDVINWVEDEEQFIAKALAPAEVLKVELLE 303 Query: 304 DVGRIE----------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 RIE V+VP Q SLAIG +GQN +LA+ LTG+ IDI+ Sbjct: 304 PEVRIEHKGEEKEFERVIKKCRVVVPNNQFSLAIGNKGQNAKLAAGLTGYKIDIV 358 >gi|15834991|ref|NP_296750.1| transcription elongation factor NusA [Chlamydia muridarum Nigg] gi|270285160|ref|ZP_06194554.1| transcription elongation factor NusA [Chlamydia muridarum Nigg] gi|270289179|ref|ZP_06195481.1| transcription elongation factor NusA [Chlamydia muridarum Weiss] gi|301336555|ref|ZP_07224757.1| transcription elongation factor NusA [Chlamydia muridarum MopnTet14] gi|7190412|gb|AAF39230.1| N utilization substance protein A [Chlamydia muridarum Nigg] Length = 434 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 146/418 (34%), Positives = 240/418 (57%), Gaps = 9/418 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F + Sbjct: 4 DLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R AER Sbjct: 64 IVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDQFGRIAAHAARQIIGQKLRHAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y E++ + EIISG +K G N++VDLG +G++ E + GD++ + + Sbjct: 124 DVIYEEYRHRKNEIISGVIKSFSRGSNLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALL 183 Query: 187 YDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 Y+V+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV SS Sbjct: 184 YEVQESENGGAEVILSRSHPEFVKQLFMQEVPELEEGSVEIVKIAREAGYRTKMAVRSSS 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + ED Sbjct: 244 PQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQK----DFNE-R 358 I +IV + IG+RG N RL SQ+ G+ +++ ++E + Q+ +F + R Sbjct: 304 KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFEDPR 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 364 LDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 >gi|325294242|ref|YP_004280756.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064690|gb|ADY72697.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 374 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 151/347 (43%), Positives = 220/347 (63%), Gaps = 22/347 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I ++ V+ + I AAR G + V+I+ + D +F+ VVE+V++ + Sbjct: 14 EKGISKEDVVKAVKVGIINAARKA-GYKGHLVVKIDEDGKDFGIFQEKTVVEDVKDIDYE 72 Query: 79 ISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ISL+ A++ S+ +G V + + GR+A ++A QVI +K+ EAER Y FK+K Sbjct: 73 ISLEEAKELFGDSVKLGDKVLVEIKTEELGRIAAKAAAQVIHEKISEAERKALYDYFKEK 132 Query: 138 VGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV----RRE 192 VG+IISGTVK ++ G+VI+DLG G++ ++E IS+E R GDRV++YIYDV +R Sbjct: 133 VGDIISGTVKEIKRNGDVILDLGRIVGILPKEEQISKEKYRIGDRVRAYIYDVVFDYKRY 192 Query: 193 QR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 R P V+LSRTHP+F+ +L +E+PE+ +G+V++KAV+R+PG RAK+AV Sbjct: 193 NRRKPSKIDDYPPPYVILSRTHPKFLKRLMEIEIPEVADGLVEIKAVAREPGIRAKVAVD 252 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + IDPVGAC+G++GSR+ + EL EKI+I+ W+ D A V L PA V + Sbjct: 253 SKEEYIDPVGACIGVKGSRILPISRELSGEKIEIIRWTDDVAELVARVLSPAKVLQSESY 312 Query: 303 EDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT--IDIITE 344 ED R+EV+VP +QLSLAIG+ G N RLAS+L G IDII E Sbjct: 313 EDENGELRVEVVVPDDQLSLAIGKHGVNARLASKLVGQIVGIDIIKE 359 >gi|304383857|ref|ZP_07366314.1| transcription termination factor NusA [Prevotella marshii DSM 16973] gi|304334935|gb|EFM01208.1| transcription termination factor NusA [Prevotella marshii DSM 16973] Length = 420 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 137/331 (41%), Positives = 209/331 (63%), Gaps = 3/331 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R VV EV++ Sbjct: 24 KNIDRTTLVSVLEESFRNVIAKLFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVQDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A+ + +IG VS+P+ FGR AV + +Q + KV E E D Y ++KD+ Sbjct: 84 EISLSEAQKIEKDYEIGEEVSEPVDFAKFGRRAVLNLRQTLASKVLELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V +V V IVD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIISGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGETIRTVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ V+ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLQRLLEAEVPEIGDGLITVRKIARIPGERAKVAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVYELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEENRKAEVFLKPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +SLAIGR G N++LAS LT +TID+ E ED Sbjct: 324 VSLAIGRSGMNIKLASMLTEYTIDVFREIED 354 >gi|227544951|ref|ZP_03975000.1| transcription termination factor NusA [Lactobacillus reuteri CF48-3A] gi|300910018|ref|ZP_07127478.1| transcription termination factor NusA [Lactobacillus reuteri SD2112] gi|227185062|gb|EEI65133.1| transcription termination factor NusA [Lactobacillus reuteri CF48-3A] gi|300892666|gb|EFK86026.1| transcription termination factor NusA [Lactobacillus reuteri SD2112] Length = 395 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 219/372 (58%), Gaps = 27/372 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 9 EMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYGD-KNVEVEFNSLTGNIKVYAVKT 67 Query: 68 VVEEVENYTCQ----ISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + ++ E +SL AR DIG + + + P DFGR+A Q+AKQV++Q+ Sbjct: 68 ITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVMQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ D Sbjct: 128 LREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHVHD 187 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+A Sbjct: 188 RIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVA 247 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + + A F+ NAL PA V V+ Sbjct: 248 VYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKEPAKFIANALNPAEVLDVI 307 Query: 301 LDEDVGRIE-------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +E+ E V+VP QLSLAIG+RGQN RLA++LT + IDI Sbjct: 308 FNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKIDI 367 Query: 342 ITEEEDSINRQK 353 +E E + N Q+ Sbjct: 368 KSESEMAENDQE 379 >gi|257791560|ref|YP_003182166.1| NusA antitermination factor [Eggerthella lenta DSM 2243] gi|317490693|ref|ZP_07949159.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA] gi|325833259|ref|ZP_08165765.1| transcription termination factor NusA [Eggerthella sp. HGA1] gi|257475457|gb|ACV55777.1| NusA antitermination factor [Eggerthella lenta DSM 2243] gi|316910224|gb|EFV31867.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA] gi|325485641|gb|EGC88109.1| transcription termination factor NusA [Eggerthella sp. HGA1] Length = 405 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/364 (40%), Positives = 219/364 (60%), Gaps = 43/364 (11%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S+ +E LQ A+A+E+ ID ++ + S+ K+ + + D RV I+ +TG I Sbjct: 1 MASSELIEALQ---ALAHERKIDEFYLIERLEASLAKSYQHILDLEWDARVTIDRQTGHI 57 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ L+ V E E T + S RD + P D R+A Q+AK VI Sbjct: 58 YVYELVPVGEPDEE-TGEYSEFEERD--------------VTPDDVSRIAAQNAKGVIAS 102 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-------------IRR 167 VREA R Y EF D+VG++++GTV + I+ + DGV R Sbjct: 103 IVREAGRQSIYEEFSDRVGDLVTGTVLQGTPDFTIIKI--RDGVEAELPHYDVKRNPNER 160 Query: 168 DETISRENLRPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVP 217 +E S E+ R R+K I +VR EQ P +++SRTHP + +LF +EVP Sbjct: 161 NERPSNEHYRHNQRLKVLIIEVRDPNSDAPKMRGEQARPAIVVSRTHPDLIRRLFEIEVP 220 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+G+V++K+++R+PG+R+K+AV S ++++DPVGACVG +GSRV+ VV ELR+E++D++ Sbjct: 221 EIYDGMVEIKSIAREPGARSKIAVASREANLDPVGACVGPKGSRVRMVVEELRNERVDVI 280 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 W+ D A +V NAL PA VT+VV+DED V+VP +QLSLAIG+ GQN RLA++LTGW Sbjct: 281 QWAEDPAVYVANALSPAKVTRVVIDEDNHYATVVVPDDQLSLAIGKEGQNARLAARLTGW 340 Query: 338 TIDI 341 IDI Sbjct: 341 HIDI 344 >gi|312880100|ref|ZP_07739900.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260] gi|310783391|gb|EFQ23789.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260] Length = 375 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 131/343 (38%), Positives = 225/343 (65%), Gaps = 5/343 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK + +++ S + ++ A + G + V ++ E G+ISL + +VV E+EN + Sbjct: 17 EKGLSEEIIASSLEAALVSAYKKFKGGNQTVEVFLDFENGEISLCEVRQVVGEIENPDQE 76 Query: 79 ISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++L A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AER + EF D+ Sbjct: 77 VTLDEAHAMGFADVESGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAERQVIFEEFADR 136 Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G++++G++ + E ++V + ++ ++ R+E I E PGDR+K ++ DVR+ RGP Sbjct: 137 IGDLVTGSIFKTEGDQILVRVNERTEAILPREERIVGEAYHPGDRLKFFLLDVRQTTRGP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRTHP + +L +E+PEI G ++++ + R+ G+RAK+AV S D+++DPVGACVG Sbjct: 197 RIVVSRTHPGLLRRLLELEIPEIQEGTIEIRNIVREAGARAKVAVASLDTNVDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRIEVIVPK 314 RG+R++++ EL E+ID++VWS D +V NAL PA + K+ +L+++ + V V Sbjct: 257 SRGTRIKSISGELGGERIDVIVWSSDPLAYVRNALSPAKIAKIEPILEQEKA-LRVFVRP 315 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +QLSL+IG+ GQNVRLA++LTGW IDI E + + KD E Sbjct: 316 DQLSLSIGKAGQNVRLAARLTGWKIDIKVLEPERLPTLKDLFE 358 >gi|312865489|ref|ZP_07725716.1| transcription termination factor NusA [Streptococcus downei F0415] gi|311099007|gb|EFQ57224.1| transcription termination factor NusA [Streptococcus downei F0415] Length = 429 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 207/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID++ ++ + +S++ A + YG VE N +TGD ++ + E Sbjct: 4 EMLEAFRVLEEEKHIDKNDIIDAVTESLKSAYKRRYGQSDSCEVEFNEKTGDFQVYSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLADALKISSAYELGDKIRFEESVKEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSIEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPRGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ VV++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKVVSKFHPVRLDPKSGLAVPVEENIDVIQWEEDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE+ V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDYVIFDDENSKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|238916823|ref|YP_002930340.1| N utilization substance protein A [Eubacterium eligens ATCC 27750] gi|238872183|gb|ACR71893.1| N utilization substance protein A [Eubacterium eligens ATCC 27750] Length = 381 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 135/348 (38%), Positives = 219/348 (62%), Gaps = 14/348 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E ID++++ + + S+ ++ + + RVE++ TGD ++ Sbjct: 4 ELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYSDRT 63 Query: 68 VVEEV----------ENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 VVEEV E Y I+L+ AR P +G V++ + +F R A ++AK Sbjct: 64 VVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAKNAK 123 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRE 174 I+Q +RE E++ Y E+ K E+I+G V+RV + G++ +DLG V++ D+ + Sbjct: 124 NTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGRLQTVLKADDKFKDK 183 Query: 175 NLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 PGDR+K Y+ DV RE+ GP V +SR + + KLF EV EI +G+V++ ++R+ Sbjct: 184 KFVPGDRIKLYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIMGIAREA 243 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSR K+AV ++ +++DPVGACVG+ G+RV+A+V EL +E+IDI+ W +SA ++NAL P Sbjct: 244 GSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLIVNALSP 303 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V D++ + +++V ++QLSLAIG++GQNVRLA++LTG+ IDI Sbjct: 304 AKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDI 351 >gi|332523131|ref|ZP_08399383.1| transcription termination factor NusA [Streptococcus porcinus str. Jelinkova 176] gi|332314395|gb|EGJ27380.1| transcription termination factor NusA [Streptococcus porcinus str. Jelinkova 176] Length = 384 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 208/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 4 EMLEAFRILEEEKHINKDDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDMVLFDEIDSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|260591778|ref|ZP_05857236.1| transcription termination factor NusA [Prevotella veroralis F0319] gi|260536062|gb|EEX18679.1| transcription termination factor NusA [Prevotella veroralis F0319] Length = 421 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 131/328 (39%), Positives = 207/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV EV++ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVKDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + V+ VD N++ ++ + E I R+ R G+ +++ I V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEIAEGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LTG+TID+ E Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRE 351 >gi|255033849|ref|YP_003084470.1| transcription elongation factor NusA [Dyadobacter fermentans DSM 18053] gi|254946605|gb|ACT91305.1| NusA antitermination factor [Dyadobacter fermentans DSM 18053] Length = 413 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 136/346 (39%), Positives = 220/346 (63%), Gaps = 6/346 (1%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV----EEV 72 A K+IDR ++SV+ + + R YGT + V INPE+GD+ ++R E+V E++ Sbjct: 14 ASSKNIDRPTMISVLEEVFRTMIRKKYGTDDNFDVIINPESGDLEMWRTREIVDDNSEDI 73 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 Y +I L AR ++G V++ + ++FGR VQ+A+Q +IQK+++ E++ Y Sbjct: 74 WEYN-KIPLNEARKIQSDFEVGEEVAEEVKLVEFGRRLVQTARQTLIQKIKDMEKEIMYE 132 Query: 133 EFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++KD+VGE+I+G V + + + +IVD ++ + R E IS++ R G+ VKS I+ V Sbjct: 133 KYKDQVGEMITGEVYQTLRHEVIIVDSEGNELSLPRTEQISKDRFRKGESVKSVIHKVEM 192 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 P++ LSRT P F+ +LF +E+PEIY+GI+ V+ V R+PG RAK+AV S D IDPV Sbjct: 193 NNGSPKITLSRTSPVFLERLFEVEIPEIYDGIISVRKVVREPGERAKVAVESYDDRIDPV 252 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVGM+GSR+ ++V EL +E ID++ ++ + + AL PA V+ + +D + R+ V Sbjct: 253 GACVGMKGSRIHSIVRELGNENIDVINYTDNLELLISRALSPAKVSSMQIDREAKRVSVF 312 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + +Q+SLAIG+ GQN++LA +L G ID+ + E+ + D E Sbjct: 313 LKPDQVSLAIGKGGQNIKLAGKLVGMEIDVFRDIEEQNDEDVDLTE 358 >gi|283769341|ref|ZP_06342240.1| transcription termination factor NusA [Bulleidia extructa W1219] gi|283103998|gb|EFC05382.1| transcription termination factor NusA [Bulleidia extructa W1219] Length = 569 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 136/330 (41%), Positives = 204/330 (61%), Gaps = 4/330 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRV--EINPETGDISLFRLLEVVEEVE 73 V E+SI + V+L + +++ KA + + DI V EIN + I LF+ VV EVE Sbjct: 15 VEEERSIPQSVILEALKEAMAKAYKK-NEELPDIDVVAEINEKKKSIDLFQNYVVVTEVE 73 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + ++SL+ AR D + +G V P+ R A AK V+ QK+REAE++ Y E Sbjct: 74 DDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREAEKEAVYNE 133 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + ++ E++ GT++ ++ +V+LG + ++ E I E LR R+K I +V +E Sbjct: 134 YIGQLNEMVFGTIESIKDKFTLVNLGKTTALMLSGEQIPNERLRENQRIKVVITEVNKEG 193 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +G QVL+SR + +LF EVPEI+ G+V++KA++R+ G R K+AV S +DP+GA Sbjct: 194 KGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSHHPEVDPIGA 253 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 C+G RGSRVQ ++ EL+ EK+DI WS D + V NAL PA + V+ +ED G + VIV Sbjct: 254 CIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED-GSLMVIVA 312 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 ++QLSLAIG+RG+N RLA +LT IDI T Sbjct: 313 EDQLSLAIGKRGKNARLAVKLTNRKIDIKT 342 >gi|312130305|ref|YP_003997645.1| nusa antitermination factor [Leadbetterella byssophila DSM 17132] gi|311906851|gb|ADQ17292.1| NusA antitermination factor [Leadbetterella byssophila DSM 17132] Length = 414 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 222/351 (63%), Gaps = 12/351 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L++ A EK+IDR +++++ D ++ R YG + + +NPE+GD+ ++R E Sbjct: 5 DLIESFAEFAREKNIDRPTMIAILEDVLRTMIRKAYGEDHNFDIILNPESGDLEMWRKRE 64 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E++ ++ +I L A+ +P +IG V++P+ DFGR VQ+A+Q +IQKV+ Sbjct: 65 IVDDNSEDIWDHD-KIPLSEAKKIEPDFEIGEEVAEPVKIEDFGRRIVQTARQTLIQKVK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 + E++ Y ++KD+VGE+++ V ++ VI +D ++ + + E I ++ + G + Sbjct: 124 DLEKEMLYDQYKDQVGELVTVEVYQILSREVICIDEEGNELSLPKGEQIPKDRFKKGSSI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I+ V P++ LSRT P F+ +LF +E+PEI +GI+ ++ + R+PG RAK+AV Sbjct: 184 RAIIHKVEIHNGNPKLTLSRTSPVFLERLFELEIPEIQDGIISIRKIVREPGERAKVAVE 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ ++V EL +E ID++ W+ + + AL PA ++ V D Sbjct: 244 SFDDRIDPVGACVGMKGSRIHSIVRELENENIDVIQWTDNINLLISRALSPAKISNVRFD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI------ITEEED 347 E+ R+ V + +Q+SLAIG+ G N++LAS+L G ID+ + EEED Sbjct: 304 ENAERVSVFLKPDQVSLAIGKGGLNIKLASKLIGLEIDVFRDIDGVVEEED 354 >gi|111225121|ref|YP_715915.1| transcription elongation protein nusA [Frankia alni ACN14a] gi|111152653|emb|CAJ64394.1| Transcription elongation protein nusA [Frankia alni ACN14a] Length = 365 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 200/334 (59%), Gaps = 28/334 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D ++ M ++ A G+ D RV I+ TG++S+ Sbjct: 14 EKDIAFDTLVQAMETALLTAYHHTAGSAPDARVVIDRTTGEVSVL--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 R+P D D P DFGR+A +AKQVI+Q++REA+++ Y ++ D+ Sbjct: 59 -------AREPGPDGTSREYDDTP-ADFGRIATMTAKQVIMQRLREAQQEVTYGQYADRE 110 Query: 139 GEIISGTVKRVE--YGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 E++SG V+ E G+ V+VDLG +GV+ E + E L GDR+K Y+ V R Sbjct: 111 HEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERLEHGDRIKCYVVHVARGPH 170 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S + ++P GAC Sbjct: 171 GPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSKVAGVNPKGAC 230 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G GSRV+AV+ EL EKIDIV WS D ATFV +AL PA V +V + + R V+VP Sbjct: 231 IGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGSALSPARVARVEVTDLASRSARVVVP 290 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 QLSLAIGR GQN RLA++LTGW IDI ++ ED Sbjct: 291 DYQLSLAIGREGQNARLAARLTGWRIDIHSDAED 324 >gi|294507805|ref|YP_003571863.1| transcription factor [Salinibacter ruber M8] gi|294344133|emb|CBH24911.1| transcription factor [Salinibacter ruber M8] Length = 536 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 136/334 (40%), Positives = 208/334 (62%), Gaps = 5/334 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVE 73 +A K +DRD + ++ D + R YG+ + NP+ GDI + + EVV EVE Sbjct: 13 IARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQEVVGDWEVE 72 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +I A+ D +G V+ L +FGR AV +A+Q Q++R+ E+++ Y E Sbjct: 73 DPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDIEKEQVYQE 132 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + + +GEI+ G + +V ++ +++ V+ RDE I ++ R G+ +++ + +VRR+ Sbjct: 133 YTELIGEIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTVVKEVRRDA 192 Query: 194 -RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S D +DPVG Sbjct: 193 GSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESHDEKVDPVG 252 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEV 310 ACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L DED R V Sbjct: 253 ACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQDEDPPRARV 312 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VP +++S AIG+RG N++LASQLTG+ ID+ E Sbjct: 313 EVPADEVSQAIGKRGVNIKLASQLTGYEIDVYRE 346 >gi|295693137|ref|YP_003601747.1| transcription termination-antitermination factor nusa [Lactobacillus crispatus ST1] gi|295031243|emb|CBL50722.1| Transcription termination-antitermination factor NusA [Lactobacillus crispatus ST1] Length = 397 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 133/341 (39%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 344 >gi|269120926|ref|YP_003309103.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386] gi|268614804|gb|ACZ09172.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386] Length = 358 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 132/321 (41%), Positives = 201/321 (62%), Gaps = 3/321 (0%) Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDR 87 L + ++ A + YG + V+IN +TG++ +F E+V+EVEN +ISL A++ Sbjct: 28 LEAVETALLAAYKKNYGEKENAEVKINHDTGEVKVFSRKEIVDEVENPEYEISLDDAKNF 87 Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 +GGVV + DF R A+Q+AKQ++IQKVRE E+ Y FK+K I++G V+ Sbjct: 88 KKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQKVRECEKQNIYNNFKEKENSIVTGIVR 147 Query: 148 RV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 +V E G++ +D+ + +I E + + GDRVK YI V + + +SR + Sbjct: 148 KVDEKGSLYIDINGLEAIIPEKELSDTDVFKQGDRVKVYIGKVEEGTKFTKTFISRKSEE 207 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266 + KLF +E+PEI +G++ +K+V+R+ GSR K+A++S D ++D GAC+G G R+Q+++ Sbjct: 208 MIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKVAIYSDDPNLDVKGACIGKGGMRIQSII 267 Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--IEVIVPKEQLSLAIGRR 324 EL+ EKIDIV+W+ D FV NAL PA V V + ED G +V V +QLSLAIG++ Sbjct: 268 DELKGEKIDIVLWNEDIRYFVKNALNPAEVISVEIIEDNGEEVAKVEVASDQLSLAIGKK 327 Query: 325 GQNVRLASQLTGWTIDIITEE 345 GQN RLA++L G IDI T E Sbjct: 328 GQNSRLAAKLCGIKIDIFTSE 348 >gi|227904178|ref|ZP_04021983.1| transcription elongation factor NusA [Lactobacillus acidophilus ATCC 4796] gi|227868197|gb|EEJ75618.1| transcription elongation factor NusA [Lactobacillus acidophilus ATCC 4796] Length = 400 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 211/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 EMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 134 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 194 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V V DE+ Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDEEE 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 354 >gi|218282331|ref|ZP_03488621.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989] gi|218216704|gb|EEC90242.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989] Length = 536 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 139/341 (40%), Positives = 219/341 (64%), Gaps = 4/341 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + ++ + +D+V + +++ KA R + + +++V ++ G I ++ Sbjct: 9 DLAKALQGIESDRQLSKDIVEDALKEALTKAYRR-HIDIPEVQVRVDIVDGTIHIYHERV 67 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ ++ L ++ +P+I IG +V + + DF R AV AK V+ QK+REAE+ Sbjct: 68 VVEEVEDDELEVQLDEIQNENPNIKIGDIVDEEVDFKDFDRAAVVLAKNVMKQKIREAEK 127 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ DKV E++ GT++ VE VIV++G + V+++ I E+ + GD + I Sbjct: 128 AQVYEEYCDKVDEMVLGTIETVEEKFVIVNIGKTLAVMKKSAQIPTEHYKEGDNILVVIT 187 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++R+ G R K+AV+S + + Sbjct: 188 EVNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIAREAGERCKIAVYSHNEN 247 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-- 305 IDP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E V Sbjct: 248 IDPIGACIGPRGSRVQTIIEELNGEKIDIFEWSDNISELIANALSPSTGVAVIPNETVKD 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 G I V+VP QLSLAIG+RG+N RLA +LT IDI +E E Sbjct: 308 GLI-VVVPDNQLSLAIGKRGKNARLAVKLTNHKIDIKSESE 347 >gi|86742245|ref|YP_482645.1| NusA antitermination factor [Frankia sp. CcI3] gi|86569107|gb|ABD12916.1| NusA antitermination factor [Frankia sp. CcI3] Length = 365 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/331 (42%), Positives = 203/331 (61%), Gaps = 28/331 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D ++ M ++ A G+ D RV I+ TGD+S+ E+ + T Sbjct: 14 EKDIAFDTLVQAMETALLTAYHHTAGSAQDARVVIDRTTGDVSVL----AREQGPDGT-- 67 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +R+ D + P DFGR+A +AKQVI+Q++REA+++ Y ++ D+ Sbjct: 68 -----SREYDDT------------PADFGRIATMTAKQVIMQRLREAQQEVTYGQYADRE 110 Query: 139 GEIISGTVKRVEY--GN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 EI+SG V+ E G+ V+V+LG +GV+ E + E L GDR+K Y+ V R Sbjct: 111 HEIVSGVVQHHEQRAGSRVVLVNLGTVEGVLPPAEQVPGERLEHGDRIKCYVVHVARGPH 170 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S + ++P GAC Sbjct: 171 GPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSRVAGVNPKGAC 230 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G GSRV+AV+ ELR EKIDIV WS D ATFV +AL PA V +V + + R V+VP Sbjct: 231 IGPMGSRVRAVMAELRGEKIDIVDWSADPATFVGSALSPARVARVEVTDPASRSARVVVP 290 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 QLSLAIGR GQN RLA++LTGW IDI ++ Sbjct: 291 DYQLSLAIGREGQNARLAARLTGWRIDIHSD 321 >gi|238854742|ref|ZP_04645072.1| transcription termination factor NusA [Lactobacillus jensenii 269-3] gi|260663974|ref|ZP_05864827.1| transcription termination factor NusA [Lactobacillus jensenii SJ-7A-US] gi|282932867|ref|ZP_06338264.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|313472265|ref|ZP_07812757.1| transcription termination factor NusA [Lactobacillus jensenii 1153] gi|238832532|gb|EEQ24839.1| transcription termination factor NusA [Lactobacillus jensenii 269-3] gi|239529661|gb|EEQ68662.1| transcription termination factor NusA [Lactobacillus jensenii 1153] gi|260561860|gb|EEX27829.1| transcription termination factor NusA [Lactobacillus jensenii SJ-7A-US] gi|281302902|gb|EFA95107.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] Length = 368 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I +++++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDARLEVSLKEALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++G V+R + V V + + V+ R + + E P D+++ + Sbjct: 124 NHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D + Sbjct: 184 KVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA--IVTKVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA I + DED Sbjct: 244 IDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQ 344 >gi|257063653|ref|YP_003143325.1| transcription termination factor NusA [Slackia heliotrinireducens DSM 20476] gi|256791306|gb|ACV21976.1| transcription termination factor NusA [Slackia heliotrinireducens DSM 20476] Length = 401 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/358 (41%), Positives = 215/358 (60%), Gaps = 43/358 (12%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ A+A+EK ID ++ + S+ K+ +S+ D RV I+ TG I ++ L+ Sbjct: 4 ELMDALQALAHEKKIDEIYLIERLEASLAKSYQSILNLEWDARVTIDRTTGQIYVYELVP 63 Query: 68 VVEEVEN-YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E E+ Y + +RD + P + R+A Q+AK VI VREA Sbjct: 64 TGEMDEDGYWTEFE-----ERD------------VTPSNVSRIAAQNAKSVIASIVREAG 106 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-------------RRDETISR 173 R Y EF+D+VG+I++GTV + IV + DGV R+E + Sbjct: 107 RQSIYDEFRDRVGDIVTGTVLQGTPDFTIVKI--RDGVEAELPHYDEKRNPGERNEVPAG 164 Query: 174 ENLRPGDRVKSYIYDVRR----EQRG------PQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 E R R+K+ I DVR E RG P +++SRTHP + +LF +EVPEIY+G+ Sbjct: 165 ERYRHNQRIKTLIIDVRDPNSVENRGRGDQARPAIVVSRTHPDLIRRLFELEVPEIYDGM 224 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V++K+++R+PG+R+K+AV S + ++DPVGACVG +GSRV+ VV ELR+E++D++ WS D Sbjct: 225 VEIKSIAREPGARSKVAVASREPNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSEDP 284 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A +V NAL PA VT+V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 285 AKYVANALSPARVTRVSVDEENQYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDI 342 >gi|58337537|ref|YP_194122.1| transcription elongation factor NusA [Lactobacillus acidophilus NCFM] gi|58254854|gb|AAV43091.1| transcription termination-antitermination factor [Lactobacillus acidophilus NCFM] Length = 389 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 211/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 344 >gi|282881115|ref|ZP_06289802.1| transcription termination factor NusA [Prevotella timonensis CRIS 5C-B1] gi|281304919|gb|EFA96992.1| transcription termination factor NusA [Prevotella timonensis CRIS 5C-B1] Length = 421 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 210/332 (63%), Gaps = 3/332 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+LK A + +P +IG VS+P+ FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EIALKEALEIEPDYEIGEEVSEPINFSKFGRRAILNLRQTLASKVLELEHDALYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V ++ V+ +D N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIISGEVYQIWKREVLLIDDENNELILPKSEQIPSDQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPVFLERLLEAEVPEINDGLISIKRIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID+V ++ + V AL PA ++ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVVNYTSNIKLLVQRALSPAHISSINIDEENHKAEVYLKPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +SLAIGR G N++LAS LT +TID+ E D+ Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFREVSDA 355 >gi|256851259|ref|ZP_05556648.1| transcription termination factor NusA [Lactobacillus jensenii 27-2-CHN] gi|260660683|ref|ZP_05861598.1| transcription termination factor NusA [Lactobacillus jensenii 115-3-CHN] gi|282934727|ref|ZP_06339970.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|297206126|ref|ZP_06923521.1| transcription termination factor NusA [Lactobacillus jensenii JV-V16] gi|256616321|gb|EEU21509.1| transcription termination factor NusA [Lactobacillus jensenii 27-2-CHN] gi|260548405|gb|EEX24380.1| transcription termination factor NusA [Lactobacillus jensenii 115-3-CHN] gi|281301302|gb|EFA93603.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|297149252|gb|EFH29550.1| transcription termination factor NusA [Lactobacillus jensenii JV-V16] Length = 368 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 211/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I +++++ + ++ A + Y ++ V+++ G+ + + Sbjct: 4 EMLEAFATLETEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDLDERKGNFKVMAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++G V+R + V V + + V+ R + + E P D+++ + Sbjct: 124 NHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D + Sbjct: 184 KVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA--IVTKVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA I + DED Sbjct: 244 IDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQ 344 >gi|313889714|ref|ZP_07823357.1| transcription termination factor NusA [Streptococcus pseudoporcinus SPIN 20026] gi|313122011|gb|EFR45107.1| transcription termination factor NusA [Streptococcus pseudoporcinus SPIN 20026] Length = 384 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 208/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D+ D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDMVLFDDTDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|312869034|ref|ZP_07729211.1| transcription termination factor NusA [Lactobacillus oris PB013-T2-3] gi|311095460|gb|EFQ53727.1| transcription termination factor NusA [Lactobacillus oris PB013-T2-3] Length = 398 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/358 (38%), Positives = 214/358 (59%), Gaps = 20/358 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ D + EK I ++VV+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 9 EMIGALDYLEKEKGIKKEVVIEALEQALESAYKQNYGD-KNVEVEFNATTGNIKVYAVKT 67 Query: 68 VVEEVENYTCQ----ISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + ++ E +SL AR D+ + + + P +FGR+A Q+AKQV++Q+ Sbjct: 68 ITDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQVVMQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ R D Sbjct: 128 LREEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYRVHD 187 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+A Sbjct: 188 RIQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVA 247 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D +IDPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ Sbjct: 248 VYSNDDNIDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVI 307 Query: 301 LDEDVG------------RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ++ V V+VP +QLSLAIG+RGQN RLA++LT + IDI + E Sbjct: 308 FNDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKSASE 365 >gi|268319261|ref|YP_003292917.1| transcription elongation factor NusA [Lactobacillus johnsonii FI9785] gi|262397636|emb|CAX66650.1| transcription elongation factor NusA [Lactobacillus johnsonii FI9785] Length = 394 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 216/344 (62%), Gaps = 8/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 124 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 181 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 DS IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 241 DSDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ED VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + Sbjct: 301 EDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQ 344 >gi|42519362|ref|NP_965292.1| transcription elongation factor NusA [Lactobacillus johnsonii NCC 533] gi|41583650|gb|AAS09258.1| N utilization substance protein A-like protein [Lactobacillus johnsonii NCC 533] Length = 406 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 216/344 (62%), Gaps = 8/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 124 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 181 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 DS IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 241 DSDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ED VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + Sbjct: 301 EDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQ 344 >gi|302528542|ref|ZP_07280884.1| transcription termination factor NusA [Streptomyces sp. AA4] gi|302437437|gb|EFL09253.1| transcription termination factor NusA [Streptomyces sp. AA4] Length = 350 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 135/332 (40%), Positives = 205/332 (61%), Gaps = 27/332 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I D V+ + ++ A + G R++I+ +TG L R+L Sbjct: 8 AIERDKDIPFDTVIEAIETALLTAYKHTEGHQPHARIDIDRKTG---LVRVLA------- 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +T +V + D + P FGR+A +A+QVI+Q++R+AE ++ Y EF Sbjct: 58 HTLTSEGEVDEEWDDT------------PEGFGRIAATTARQVILQRLRDAEHEKTYGEF 105 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 K GEI++G V+R N V++ +G+++GV+ + E ++ E+ G R+K++++ V Sbjct: 106 SAKEGEIVAGVVQRDARANARGMVVIQVGDTEGVLPQAEQVAGESYEHGTRIKAFVFGVS 165 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGPQ++LSR+HP + KLF +EVPEI +G V++ AV+R+PG R+K+AV S+ ++ Sbjct: 166 RSNRGPQIMLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRSKIAVRSTIPGVNA 225 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G+RV+ V++EL EKIDI+ WS D A FV NAL PA V V V+DE Sbjct: 226 KGACIGPMGARVRNVMSELAGEKIDIIDWSDDPAKFVGNALSPAKVVSVRVVDERAKTAR 285 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 286 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 317 >gi|329667119|gb|AEB93067.1| N utilization substance protein A-like protein [Lactobacillus johnsonii DPC 6026] Length = 406 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 216/344 (62%), Gaps = 8/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 124 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 181 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 DS IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 241 DSDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ED VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + Sbjct: 301 EDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQ 344 >gi|227890227|ref|ZP_04008032.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC 33200] gi|227849229|gb|EEJ59315.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC 33200] Length = 416 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 216/344 (62%), Gaps = 8/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 14 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 133 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 134 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRV 190 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 191 LVTRVGSDSKGAQITVSRTAPALVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 250 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 DS IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 251 DSDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGD 310 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ED VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + Sbjct: 311 EDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQ 354 >gi|83815918|ref|YP_445895.1| transcription elongation factor NusA [Salinibacter ruber DSM 13855] gi|83757312|gb|ABC45425.1| N utilization substance protein A [Salinibacter ruber DSM 13855] Length = 546 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 135/334 (40%), Positives = 208/334 (62%), Gaps = 5/334 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVE 73 +A K +DRD + ++ D + R YG+ + NP+ GDI + + EVV EVE Sbjct: 13 IARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQEVVGDWEVE 72 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +I A+ D +G V+ L +FGR AV +A+Q Q++R+ E+++ Y E Sbjct: 73 DPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDIEKEQVYQE 132 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + + +G+I+ G + +V ++ +++ V+ RDE I ++ R G+ +++ + +VRR+ Sbjct: 133 YTELIGDIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTVVKEVRRDA 192 Query: 194 -RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S D +DPVG Sbjct: 193 GSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESHDEKVDPVG 252 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEV 310 ACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L DED R V Sbjct: 253 ACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQDEDPPRARV 312 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VP +++S AIG+RG N++LASQLTG+ ID+ E Sbjct: 313 EVPADEVSQAIGKRGVNIKLASQLTGYEIDVYRE 346 >gi|307297718|ref|ZP_07577524.1| transcription termination factor NusA [Thermotogales bacterium mesG1.Ag.4.2] gi|306916978|gb|EFN47360.1| transcription termination factor NusA [Thermotogales bacterium mesG1.Ag.4.2] Length = 342 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/340 (40%), Positives = 209/340 (61%), Gaps = 9/340 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L LL+ D + EK+I+++ V+ ++ ++Q A + + + SD+ V I+ TGDI +F L Sbjct: 3 LNLLEALDQLQDEKNIEKEEVIDILEKALQSAYKKNFASESDVDVRIDRLTGDIEVFEKL 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE VEN + ++ L+ A D S +IG V L F R+A Q+A+QV+IQK+RE E Sbjct: 63 LVVEAVENPSLEVKLEEALKLDSSAEIGSTVERKLNIKKFKRIAAQTARQVLIQKIREKE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ + ++ D G + + V RV + + +G + I E I E R +K Y+ Sbjct: 123 KENLFDKYVDMKGTVTTSEVLRVTDEWIDLRIGKLETRIPTKELIPGEQPRLNSLMKVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV + RGP++L++R P F+++L ++VPEI +G V VKA++R+ G R K+AVFS ++ Sbjct: 183 VDVTKSVRGPRLLVTRRTPDFVIELLKLQVPEIASGDVTVKAIAREEGIRTKVAVFSQNT 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGAC+G G+R+ V+ E++ EK+DI+ WS + A FV N++ PA L+ V Sbjct: 243 KVDPVGACIGESGTRIAEVLREIKPEKVDILRWSDNPAEFVGNSIAPA----SALEVKVA 298 Query: 307 RIE-----VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 IE V V QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 299 NIENHEATVFVSPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|256838936|ref|ZP_05544446.1| transcription termination factor NusA [Parabacteroides sp. D13] gi|262382600|ref|ZP_06075737.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B] gi|301308163|ref|ZP_07214117.1| transcription termination factor NusA [Bacteroides sp. 20_3] gi|256739855|gb|EEU53179.1| transcription termination factor NusA [Parabacteroides sp. D13] gi|262295478|gb|EEY83409.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B] gi|300833633|gb|EFK64249.1| transcription termination factor NusA [Bacteroides sp. 20_3] Length = 421 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 209/327 (63%), Gaps = 5/327 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+ID+D ++SV+ DS + ++GT + V INPE GD ++R VV +E+E+ Sbjct: 21 KNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDFEIWRNRTVVADDELEDENL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++L AR D ++G V+D + DFGR A+ + +Q + K+ E ++D Y ++KDK Sbjct: 81 QLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTLASKILELQKDSLYAKYKDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +G II+ V +V +++ D GN + ++ + E I + R G+ V++ + V Sbjct: 141 IGHIIAAEVYQVWKKEILLLDDDGN-ELLLPKSEQIPTDFYRKGETVRAIVQRVDNYNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERAKVAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + ++E+ + EV + E Sbjct: 260 GMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKISSIRVNEEEKKAEVYLRPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++SLAIG+ G N++LA LT +TID+ Sbjct: 320 EVSLAIGKGGLNIKLACMLTEYTIDVF 346 >gi|116629468|ref|YP_814640.1| transcription elongation factor NusA [Lactobacillus gasseri ATCC 33323] gi|116095050|gb|ABJ60202.1| Transcription elongation factor [Lactobacillus gasseri ATCC 33323] Length = 423 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 216/344 (62%), Gaps = 8/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 21 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 80 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 81 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 140 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 141 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMTHNDQLPGENYNPQDKVRV 197 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 198 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 257 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 258 DPDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGD 317 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + Sbjct: 318 DDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQ 361 >gi|15639877|ref|NP_219327.1| transcription elongation factor NusA [Treponema pallidum subsp. pallidum str. Nichols] gi|189026115|ref|YP_001933887.1| transcription elongation factor NusA [Treponema pallidum subsp. pallidum SS14] gi|3323210|gb|AAC65849.1| N utilization substance protein A (nusA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018690|gb|ACD71308.1| N utilization substance protein A [Treponema pallidum subsp. pallidum SS14] gi|291060251|gb|ADD72986.1| transcription elongation protein NusA [Treponema pallidum subsp. pallidum str. Chicago] Length = 485 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 160/467 (34%), Positives = 248/467 (53%), Gaps = 30/467 (6%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A EK +D D ++ +++ A ++ + T + V E + ++ VVEEV + Sbjct: 13 AQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEER--VCIYARKRVVEEVYDRV 70 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 ++ L A + DP+ + V L DF R +VQ+A Q I + RE ++D Y E+K Sbjct: 71 SEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYAEYKS 130 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 K GEII G +R ++ VDLG +G++ + + +++ R DR+KS + +VR+ + Sbjct: 131 KEGEIIVGYYQRARNEHIYVDLGKVEGLMPKSHQLPQDDYRQNDRIKSLVREVRKHPKSS 190 Query: 197 --QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 Q++LSRT F+ +L +EVPEIY+GIV+V + R+PG R K+AV S +DPVGAC Sbjct: 191 VVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVDPVGAC 250 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVIVP 313 VG RG R++ V+ EL DEKID++ +SPD F+ NAL PA ++ VVLDE+ IV Sbjct: 251 VGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSALAIVA 310 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIIT----EEEDSINRQK---------DFNERTQ 360 + QLS+AIG++G NVRLA++L W ID+ T EE D + D+ E ++ Sbjct: 311 ESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDYQEESE 370 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F E+I +L G DV+ L + + ++EG DE E+ E E Sbjct: 371 FSSYVGFTPELI-KILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLAAIEENFE-- 427 Query: 421 DITLQKKIRELGVSEELCSIPGI--DSKIKVALGENGIKTMEDLAGC 465 + E G + S PG D + E G++ D++ C Sbjct: 428 -------VVEEGEEASVTSSPGTGGDEDQALQCPECGVRITTDMSEC 467 >gi|332883100|gb|EGK03384.1| transcription termination factor NusA [Dysgonomonas mossii DSM 22836] Length = 418 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 125/325 (38%), Positives = 210/325 (64%), Gaps = 3/325 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 KSIDR ++SV+ DS + L+G+ + V INP+ GD+ ++R +VE ++E+ Sbjct: 20 KSIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEIWRNRVIVEDDQLEDDNT 79 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L A+ D ++G V+D + DFGR A+ + +Q + K+ E +++ Y +K+K Sbjct: 80 EIALSEAKKIDEDFEVGEEVTDEVFFEDFGRRAILNLRQTLTSKILELQKESLYNRYKEK 139 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +GEI+SG V ++ +++ D + ++ + E I + R G+ V++ + V + P Sbjct: 140 IGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKGEHVRAVVERVDNKNNNP 199 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 200 KIILSRTSPTFLERLLELEVPEINDGLITIKNIARIPGERAKVAVESYDERIDPVGACVG 259 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V ELR+E IDI+ ++ + ++ AL PA +T V ++E+ R EV++ E+ Sbjct: 260 MKGSRIHGIVRELRNENIDIINYTSNMNLYIQRALSPAKITSVKINEEEKRAEVLLRPEE 319 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI 341 +SLAIG+ G N++LAS LTG+TID+ Sbjct: 320 VSLAIGKGGFNIKLASMLTGYTIDV 344 >gi|269795641|ref|YP_003315096.1| transcription termination factor NusA [Sanguibacter keddieii DSM 10542] gi|269097826|gb|ACZ22262.1| transcription termination factor NusA [Sanguibacter keddieii DSM 10542] Length = 365 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 140/339 (41%), Positives = 205/339 (60%), Gaps = 24/339 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL--LEVVEEVENYT 76 E+ I DV++S + ++ A + G RVEI+ ++G ++++ +E E VE Sbjct: 14 EREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWAREDIETEEPVEPRY 73 Query: 77 CQ------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + +V R P D P DFGR+A +A+QVI+Q++R+ Sbjct: 74 SDGDDADGTEDDEAPTTRVVRTLGPEFDD--------TPTDFGRIATSTARQVIMQRLRD 125 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVK 183 AE D+ +F+DK GE++SG +++ V+ VD+G ++ V+ E + E G+R++ Sbjct: 126 AEDDQVLGQFRDKEGELVSGIIQQGRDPRVVLVDVGGTEAVLGAHEQVPTEKYTHGERLR 185 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 SY+ DV R +GPQ+ LSRTHP + KLF MEVPE+ +G V++ A++R+ G R K+AV + Sbjct: 186 SYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRTKMAVRA 245 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 S ++ GAC+G GSRV+AV+ EL DEKIDIV W+ D A FV +AL PA V V V+D Sbjct: 246 RVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVISVTVVD 305 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 306 ADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDI 344 >gi|150010113|ref|YP_001304856.1| transcription elongation factor NusA [Parabacteroides distasonis ATCC 8503] gi|255012627|ref|ZP_05284753.1| transcription elongation factor NusA [Bacteroides sp. 2_1_7] gi|298374483|ref|ZP_06984441.1| transcription termination factor NusA [Bacteroides sp. 3_1_19] gi|149938537|gb|ABR45234.1| putative nitrogen utilization substance protein [Parabacteroides distasonis ATCC 8503] gi|298268851|gb|EFI10506.1| transcription termination factor NusA [Bacteroides sp. 3_1_19] Length = 421 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 209/327 (63%), Gaps = 5/327 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+ID+D ++SV+ DS + ++GT + V INPE GD ++R VV +E+E+ Sbjct: 21 KNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDFEIWRNRTVVADDELEDENL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++L AR D ++G V+D + DFGR A+ + +Q + K+ E ++D Y ++KDK Sbjct: 81 QLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTLASKILELQKDSLYAKYKDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +G II+ V +V +++ D GN + ++ + E I + R G+ V++ + V Sbjct: 141 IGHIIAAEVYQVWKKEILLLDDDGN-ELLLPKSEQIPTDFYRKGETVRAIVQRVDNYNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERAKVAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + ++E+ + EV + E Sbjct: 260 GMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKISSIRVNEEEKKAEVYLRPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++SLAIG+ G N++LA LT +TID+ Sbjct: 320 EVSLAIGKGGLNIKLACMLTEYTIDVF 346 >gi|288924202|ref|ZP_06418238.1| NusA antitermination factor [Frankia sp. EUN1f] gi|288344449|gb|EFC78942.1| NusA antitermination factor [Frankia sp. EUN1f] Length = 362 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 205/338 (60%), Gaps = 28/338 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D ++ + ++ A + G+ D RV I+ +G++++F E + T Sbjct: 14 EKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF----ARESAPDGT-- 67 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +R+ D + P DFGR+A +AKQVI+Q++REA+++ Y ++ D+ Sbjct: 68 -----SREWDDT------------PADFGRIATMTAKQVIMQRLREAQQEVTYGQYADRE 110 Query: 139 GEIISGTVKRVEY--GN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 E++SG V+ E G+ V+VDLG +GV+ E + E L GDR+K Y+ V R Sbjct: 111 HEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYVVHVSRGAH 170 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S ++P GAC Sbjct: 171 GPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAPGVNPKGAC 230 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G GSRV+AV+ EL EKIDIV WS D A FV +AL PA V+KV + + R V+VP Sbjct: 231 IGPMGSRVRAVMAELHGEKIDIVDWSADPAAFVGSALSPARVSKVEVTDLANRSARVVVP 290 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 QLSLAIGR GQN RLA++LTGW IDI ++ E + +R Sbjct: 291 DYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGNPDR 328 >gi|238852618|ref|ZP_04643028.1| transcription termination factor NusA [Lactobacillus gasseri 202-4] gi|238834764|gb|EEQ26991.1| transcription termination factor NusA [Lactobacillus gasseri 202-4] Length = 406 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 132/342 (38%), Positives = 215/342 (62%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 124 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 181 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 241 DPDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E Sbjct: 301 DDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPE 342 >gi|288574932|ref|ZP_06393289.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570673|gb|EFC92230.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 366 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 223/348 (64%), Gaps = 14/348 (4%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVE----INPETGDISLFRLLEVVEEVENYTCQ 78 +R++ S++ SI+ A S Y + +E I+ ETGDIS+ + VV+EV+N + Sbjct: 17 ERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIMEIRRVVDEVKNSDAE 76 Query: 79 I-SLKVARDRDPSIDIGGVVSD--PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 + S + A P + G VV + P FGR+A Q+A+QVIIQ++++AER+ + EF Sbjct: 77 LTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQRLKDAEREIIFNEFS 136 Query: 136 DKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 ++VG++++G V + E ++V + ++ ++ R+E I+ E G R+K Y+ DVR+ R Sbjct: 137 ERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGSRMKFYLLDVRQTTR 196 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP++++SRTHP + +L +E+PEI +G+V++ + R+ G+RAK+AV + D ++DPVGAC Sbjct: 197 GPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVAVTTLDPNVDPVGAC 256 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRIEVIV 312 VG GSR++ + EL EKID+V+WS D ++ N L PA V +V +L+++ +V Sbjct: 257 VGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVEPILEQE-KSAKVFA 315 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDII---TEEEDSINRQKDFNE 357 +QLSLAIG+ GQNVRLA++LTGW +DI E+DS+ +D E Sbjct: 316 RPDQLSLAIGKAGQNVRLAARLTGWKVDINPLEAPEKDSMPTLQDLFE 363 >gi|160902006|ref|YP_001567587.1| transcription elongation factor NusA [Petrotoga mobilis SJ95] gi|160359650|gb|ABX31264.1| NusA antitermination factor [Petrotoga mobilis SJ95] Length = 341 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 129/339 (38%), Positives = 214/339 (63%), Gaps = 8/339 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L LL+ DA+ +K I RD ++ ++A SI+ A + YG ++ +EI+ +++++L Sbjct: 3 LNLLEALDALERDKGISRDSLVDIIAKSIKSAYKKNYGA-KNVEIEIDKNLTKLNVYQLW 61 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVREA 125 +VVE VEN +ISL+ A+ +P I+IG +V + DF RVA Q+AKQVI+Q ++E Sbjct: 62 KVVETVENPKEEISLEEAKKINPKIEIGEMVRKKINLKKDFRRVAAQTAKQVILQNLKEL 121 Query: 126 ERDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 E+ +Y+ K+++ + + +V + + +G + + ETI E + G+ V Sbjct: 122 EKKNLFDKYVALKNRIS---TAEIIKVSDEYIDIRIGKLETKLPMKETIPGETFKSGELV 178 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K YI +++ +GP++++SRT P+ + +L VPEI GI+++ + R+PG R K+AV Sbjct: 179 KVYIKNIQNTSKGPKIMVSRTVPELITELLSSIVPEIEEGIIKIVKIVREPGIRTKVAVV 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 SS +DPVGAC+G +GSR+ ++ EL++EK+DI+ +S D F+ +AL PA V ++L+ Sbjct: 239 SSMPGVDPVGACIGEKGSRISELLKELKNEKVDIIEYSEDPKIFIKHALAPAEVKNIILN 298 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ED V VP+ QLSLA+G+ GQ RLA+++TGW IDI Sbjct: 299 EDEKTAFVYVPENQLSLAVGKGGQTARLAAKITGWKIDI 337 >gi|311110885|ref|ZP_07712282.1| transcription termination factor NusA [Lactobacillus gasseri MV-22] gi|311066039|gb|EFQ46379.1| transcription termination factor NusA [Lactobacillus gasseri MV-22] Length = 406 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 132/342 (38%), Positives = 215/342 (62%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 124 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 181 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 241 DPDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E Sbjct: 301 DDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPE 342 >gi|317057642|ref|YP_004106109.1| NusA antitermination factor [Ruminococcus albus 7] gi|315449911|gb|ADU23475.1| NusA antitermination factor [Ruminococcus albus 7] Length = 372 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 145/354 (40%), Positives = 211/354 (59%), Gaps = 22/354 (6%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 +AD V+ E ID+DV++ + + I KA + IRV+I P TG + + L EV++ Sbjct: 9 LADLVS-ENEIDKDVLIEKIREGIIKAIKKENPESEHIRVDIEPATGKLEMCILKEVMKV 67 Query: 72 --VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 V++ +I + A+ DP I +G V P+ P GRVA Q AKQ I +++ ER++ Sbjct: 68 MFVDDPANEIYIGEAQTYDPDIKVGDWVEIPVNPAKIGRVAAQFAKQSIKHDIKDFERNK 127 Query: 130 QYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++KDK EI++ TV++VE GN ++ + ++ R E I E L+ GD++K YI Sbjct: 128 LIEQYKDKEHEIVTATVQKVEPATGNAVITIDKNEHYFYRSEQIPGEVLKEGDKIKVYIV 187 Query: 188 DVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + E+R P V LSRTH + +LF +EVPEI +G V++K++SR G R+K+AV+S D Sbjct: 188 SLGGGEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEIKSISRTEGVRSKIAVWSKDK 247 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++D VGAC+G + SR+ AVV EL+ EKID++ W D A F+ AL PA V V L E Sbjct: 248 NVDAVGACIGPKKSRISAVVQELKGEKIDVINWVEDEAEFIAKALAPAEVLSVELLEPEV 307 Query: 307 RIE----------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 RIE VIVP Q SLAIG +GQN +LA+ LTG+ IDI+ E Sbjct: 308 RIEHKGEEKEFERVIKKCRVIVPNSQFSLAIGNKGQNAKLAAGLTGYKIDIVPE 361 >gi|253581490|ref|ZP_04858715.1| transcription elongation factor NusA [Fusobacterium varium ATCC 27725] gi|251836560|gb|EES65095.1| transcription elongation factor NusA [Fusobacterium varium ATCC 27725] Length = 361 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 138/347 (39%), Positives = 213/347 (61%), Gaps = 3/347 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+ Sbjct: 1 MKSKDAKVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60 Query: 61 SLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 L+ + VVE + Y +ISL A++ +G +V + +F R A+Q+ KQ++ Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER Y FK+K +II+G ++R+ E N+ V+ + ++ E + R Sbjct: 121 IQKVREAERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+SSD +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V Sbjct: 241 KVAVYSSDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTE 347 >gi|257463891|ref|ZP_05628277.1| transcription elongation factor NusA [Fusobacterium sp. D12] gi|317061420|ref|ZP_07925905.1| transcription elongation factor NusA [Fusobacterium sp. D12] gi|313687096|gb|EFS23931.1| transcription elongation factor NusA [Fusobacterium sp. D12] Length = 353 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 211/344 (61%), Gaps = 3/344 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ + + EK I ++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDAKAFLEALNELEKEKGIAKESLLQAVEQALLTAYKKNYGDEENVEVIIDRENGDV 60 Query: 61 SLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + VVEE + Y +ISL+ AR +G + + F R A+Q+ KQ+I Sbjct: 61 KVYEVKTVVEEEDLYDAALEISLEEARKISRKAKLGEEIRIEVDCESFRRNAIQNGKQII 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R+ E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCISDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGVIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S ++ID VGAC+G + SR++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELANIDIVGACIGQKRSRIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344 >gi|154249422|ref|YP_001410247.1| transcription elongation factor NusA [Fervidobacterium nodosum Rt17-B1] gi|154153358|gb|ABS60590.1| NusA antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 344 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 207/334 (61%), Gaps = 2/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ + EK I D + ++ ++ A ++ G ++ + IN +G+I +++LEV Sbjct: 6 LLEALRELEREKGISVDESIEILEKALMSAYKNKTGE-RNVEIVINKLSGEIEAYQILEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE+VEN QISL+ A P IG +V + GR A+Q AKQV+IQK+RE E++ Sbjct: 65 VEKVENENIQISLEDALKIKPDATIGDIVKRKMNIKRLGRFAIQVAKQVLIQKIREIEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +QY ++ + VG +++ V +V + + +G + + + E I E D +K Y+ + Sbjct: 125 KQYEKYAELVGRVVTAEVLKVTPEWLDIRIGKLETHLPKKEWIPGEEFEQSDLIKVYVRE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+++++GP+++++R +F+V L +EVPEI +GI+++ + R+PG R K+AV S D + Sbjct: 185 VKKDKKGPKIIVTRIDNEFVVGLLKLEVPEIESGIIEIVKIVREPGVRTKIAVISHDPKV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DPVG+C+G GSR+ ++ EL+ EKIDI+ WS D + NAL PA V V +LD + Sbjct: 245 DPVGSCIGPEGSRIAPILKELKIEKIDIIKWSNDPKELIANALLPASVIDVEILDYESKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+V QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 SRVLVSPNQLSLAIGKAGQNARLAAKLTGWKIDI 338 >gi|19746626|ref|NP_607762.1| transcription elongation factor NusA [Streptococcus pyogenes MGAS8232] gi|139473254|ref|YP_001127969.1| transcription elongation factor NusA [Streptococcus pyogenes str. Manfredo] gi|161761305|ref|YP_060778.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10394] gi|162139101|ref|YP_599142.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10270] gi|162139179|ref|YP_603019.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10750] gi|162139397|ref|YP_280920.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS6180] gi|306826865|ref|ZP_07460165.1| transcription termination factor NusA [Streptococcus pyogenes ATCC 10782] gi|19748845|gb|AAL98261.1| transcription termination-antitermination factor [Streptococcus pyogenes MGAS8232] gi|134271500|emb|CAM29721.1| putative N utilization substance protein A [Streptococcus pyogenes str. Manfredo] gi|304430883|gb|EFM33892.1| transcription termination factor NusA [Streptococcus pyogenes ATCC 10782] Length = 385 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|312892421|ref|ZP_07751916.1| transcription termination factor NusA [Mucilaginibacter paludis DSM 18603] gi|311295205|gb|EFQ72379.1| transcription termination factor NusA [Mucilaginibacter paludis DSM 18603] Length = 411 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 209/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ D + R YGT + V +N + GD+ ++R V+E+ E+ Sbjct: 17 KNIDRPTMMSVLEDVFRSMIRKKYGTDENCDVIVNTDNGDLEIWRTRVVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A+ DP +++G + + FGR A+ +A+Q ++ K+ E E+D Y ++KD+ Sbjct: 77 EIELAEAKLLDPDLEVGDEHIELITLESFGRRAILAARQTLVSKILELEKDEIYKKYKDR 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGEII+G V +V +V D GN + ++ + E I + + GD V++ ++ V Sbjct: 137 VGEIITGEVYQVWKKETLVLDDEGN-ELLLPKSEQIPADYFKKGDSVRAVVHKVDMMNTN 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACV Sbjct: 196 PKIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ + ++ AL PA +T + LD+D V + + Sbjct: 256 GMKGSRIHGIVRELKNENIDVINFTNNVQLYIQRALSPAKITSIKLDDDKKTAAVYLKPD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 Q+SLAIGR G N++LA +LTG+ ID+ E Sbjct: 316 QVSLAIGRGGHNIKLAGKLTGYEIDVYRE 344 >gi|94544550|gb|ABF34598.1| N utilization substance protein A [Streptococcus pyogenes MGAS10270] Length = 396 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 15 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 75 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 135 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 194 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 195 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 254 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 255 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 314 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 315 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 368 >gi|50903880|gb|AAT87595.1| N utilization substance protein A [Streptococcus pyogenes MGAS10394] gi|71803212|gb|AAX72565.1| N utilization substance protein A [Streptococcus pyogenes MGAS6180] gi|94548429|gb|ABF38475.1| N utilization substance protein A [Streptococcus pyogenes MGAS10750] Length = 396 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 15 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 75 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 135 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 194 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 195 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 254 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 255 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 314 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 315 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 368 >gi|329954143|ref|ZP_08295238.1| transcription termination factor NusA [Bacteroides clarus YIT 12056] gi|328528120|gb|EGF55100.1| transcription termination factor NusA [Bacteroides clarus YIT 12056] Length = 421 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 213/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEEHKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAV 353 >gi|222153583|ref|YP_002562760.1| transcription elongation factor NusA [Streptococcus uberis 0140J] gi|222114396|emb|CAR43159.1| putative N utilization substance protein A [Streptococcus uberis 0140J] Length = 382 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 209/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRFDAKTGIEIPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D+D+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|15675574|ref|NP_269748.1| transcription elongation factor NusA [Streptococcus pyogenes M1 GAS] gi|71911225|ref|YP_282775.1| transcription elongation factor NusA [Streptococcus pyogenes MGAS5005] gi|162139078|ref|YP_597145.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS9429] gi|162139127|ref|YP_601034.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS2096] gi|13622778|gb|AAK34469.1| transcription termination-antitermination factor [Streptococcus pyogenes M1 GAS] gi|71854007|gb|AAZ52030.1| N utilization substance protein A [Streptococcus pyogenes MGAS5005] Length = 385 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|28895281|ref|NP_801631.1| transcription elongation factor NusA [Streptococcus pyogenes SSI-1] gi|161485737|ref|NP_665302.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS315] gi|209559841|ref|YP_002286313.1| transcription elongation factor NusA [Streptococcus pyogenes NZ131] gi|28810527|dbj|BAC63464.1| putative transcription termination-antitermination factor [Streptococcus pyogenes SSI-1] gi|209541042|gb|ACI61618.1| Transcription termination protein NusA [Streptococcus pyogenes NZ131] Length = 385 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|323127911|gb|ADX25208.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 385 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 208/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D+D+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|257439271|ref|ZP_05615026.1| transcription termination factor NusA [Faecalibacterium prausnitzii A2-165] gi|257198146|gb|EEU96430.1| transcription termination factor NusA [Faecalibacterium prausnitzii A2-165] Length = 358 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 140/334 (41%), Positives = 207/334 (61%), Gaps = 7/334 (2%) Query: 18 YEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVENY- 75 +E+ I + ++ + +I A + Y D + VEI+P++G ++ + VV + + Y Sbjct: 4 HERGITAEYLIEKIKAAIVIAVKKNYEVEDDNVLVEIDPDSGKFNVALVQNVVADEDWYD 63 Query: 76 -TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I + A+ S ++G V PL DFGR+A Q+AK VI Q +REAER +Q E Sbjct: 64 EHAEIGITEAQKIRKSYEVGDRVVTPLKTKDFGRIAAQTAKHVIRQGIREAERSQQLSEI 123 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRR 191 + + +II TV RV E G V +DLG + ++ R+E + E G ++ Y+ DV Sbjct: 124 QSRAHDIIQATVTRVDNEKGIVALDLGKGGEAILPRNEQVPGETYTEGQTLQVYVVDVVS 183 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +RG +V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G+R K+AV+S D++++PV Sbjct: 184 GERGARVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAGARTKMAVWSKDANVNPV 243 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEV 310 AC+G G RV AVV +L EKIDIV WS D + F+ AL PA V KV +L + V Sbjct: 244 SACIGPHGDRVAAVVEKLGGEKIDIVKWSEDVSEFISAALSPAKVLKVELLPGETRSCRV 303 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 304 TVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPE 337 >gi|323466337|gb|ADX70024.1| transcription elongation factor NusA [Lactobacillus helveticus H10] Length = 410 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 211/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 21 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 80 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 81 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 140 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ + Sbjct: 141 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQRDQMPNEVYNPQDQIRVLVT 200 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 201 HVGSDSKGVQIVVSRTAPNVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 260 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 261 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 320 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 321 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 361 >gi|322412488|gb|EFY03396.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 385 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 208/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D+D+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|251783184|ref|YP_002997489.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391816|dbj|BAH82275.1| N utilization substance protein A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 404 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 208/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 23 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 82 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 83 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 142 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 143 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 202 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 203 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 262 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 263 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 322 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D+D+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 323 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 371 >gi|289643647|ref|ZP_06475760.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata] gi|289506538|gb|EFD27524.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata] Length = 362 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 140/335 (41%), Positives = 201/335 (60%), Gaps = 28/335 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D ++ + ++ A R G +D RV I+ +G ++++ Sbjct: 14 EKDIAFDTLVEAIETALLTAYRHTDGAAADARVVIDRTSGHVAVY--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 R+ S+D G P DFGR+A +AKQVI+Q++REA+++ Y ++ D+ Sbjct: 59 -------ARETSLD-GMTREWEDTPADFGRIATMTAKQVIMQRLREAQQEITYGQYADRE 110 Query: 139 GEIISGTVKRVE--YGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 E++SG V+ E G+ V+VDLG +GV+ E + E GDR+K Y+ V R Sbjct: 111 HEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERFEHGDRIKCYVVSVTRGVH 170 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V LSRTHP+ + LF MEVPE+ +G V++ A++R+ G R+K+AV S+ + ++P GAC Sbjct: 171 GPTVTLSRTHPELVKGLFRMEVPEVADGTVEIAAIAREAGHRSKIAVRSTVAGVNPKGAC 230 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G G+RV+AV+ EL EKIDIV WS D A FV NAL PA V +V V D V V+VP Sbjct: 231 IGPMGARVRAVMAELHGEKIDIVDWSADPAAFVGNALSPARVARVEVADPAVRAARVVVP 290 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 291 DYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGA 325 >gi|116514302|ref|YP_813208.1| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093617|gb|ABJ58770.1| Transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 406 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 139/342 (40%), Positives = 212/342 (61%), Gaps = 3/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V DED Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303 Query: 306 GRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KRKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 345 >gi|257468347|ref|ZP_05632441.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] gi|317062620|ref|ZP_07927105.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] gi|313688296|gb|EFS25131.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] Length = 361 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 218/355 (61%), Gaps = 6/355 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+ Sbjct: 1 MKSKDAKVFLEALDELEREKGISKENLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60 Query: 61 SLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 L+ + VVE + Y +ISL A++ + +G +V + +F R A+Q+ KQ++ Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRVKVGDIVRIEINCEEFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER Y FK K +II+G ++R+ E N+ V+ + ++ E + R Sbjct: 121 IQKVREAERQYIYDRFKGKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+D +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V Sbjct: 241 KVAVYSADPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE---EEDSI 349 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE +EDS+ Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKEDSL 355 >gi|161507684|ref|YP_001577638.1| transcription elongation factor NusA [Lactobacillus helveticus DPC 4571] gi|160348673|gb|ABX27347.1| transcription termination-antitermination factor [Lactobacillus helveticus DPC 4571] Length = 393 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 211/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ + Sbjct: 124 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 344 >gi|94542552|gb|ABF32601.1| N utilization substance protein A [Streptococcus pyogenes MGAS9429] gi|94546443|gb|ABF36490.1| N utilization substance protein A [Streptococcus pyogenes MGAS2096] Length = 396 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 15 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 75 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 135 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 194 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 195 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 254 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 255 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 314 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 315 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 368 >gi|329117087|ref|ZP_08245804.1| transcription termination factor NusA [Streptococcus parauberis NCFD 2020] gi|326907492|gb|EGE54406.1| transcription termination factor NusA [Streptococcus parauberis NCFD 2020] Length = 395 Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++ ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 15 EMLEAFRILEEEKHINKSDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFTVRE 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +I LK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 75 VVEEVFDSRLEIGLKDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 135 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 194 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 195 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 254 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 255 VDAIGTIVGRGGSNIKKVISKFHPKRFDQKAGAEIPVEENIDVIQWVDDPAEFIYNAIAP 314 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 315 AEVDMVLFDEADSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDI 363 >gi|167764123|ref|ZP_02436250.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC 43183] gi|167698239|gb|EDS14818.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC 43183] Length = 421 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 213/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEEHKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAV 353 >gi|162139854|ref|YP_619194.2| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 406 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 139/342 (40%), Positives = 212/342 (61%), Gaps = 3/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V DED Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303 Query: 306 GRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 345 >gi|256843341|ref|ZP_05548829.1| transcription termination factor NusA [Lactobacillus crispatus 125-2-CHN] gi|256849840|ref|ZP_05555271.1| transcription termination-antitermination factor [Lactobacillus crispatus MV-1A-US] gi|262046914|ref|ZP_06019874.1| transcription termination factor NusA [Lactobacillus crispatus MV-3A-US] gi|256614761|gb|EEU19962.1| transcription termination factor NusA [Lactobacillus crispatus 125-2-CHN] gi|256713329|gb|EEU28319.1| transcription termination-antitermination factor [Lactobacillus crispatus MV-1A-US] gi|260572896|gb|EEX29456.1| transcription termination factor NusA [Lactobacillus crispatus MV-3A-US] Length = 397 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 228/399 (57%), Gaps = 7/399 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LT + IDI E E +E+T A Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEF-----VDEKTNDTADA 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + E ++ + ADVE E +S E EE Sbjct: 359 ADSSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE 397 >gi|288928619|ref|ZP_06422465.1| transcription termination factor NusA [Prevotella sp. oral taxon 317 str. F0108] gi|288329603|gb|EFC68188.1| transcription termination factor NusA [Prevotella sp. oral taxon 317 str. F0108] Length = 422 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 129/328 (39%), Positives = 208/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNPDKGDFEIYRNRMVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ +P ++G V++ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QIALAEAQKIEPDYEVGEEVTERVDFAKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++I+G V +V V IVD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLISIKRIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ ++ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENIDVINYTANTKLFIQRALSPAQVSSINIDEETRKAEVFLRPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFRE 351 >gi|158313032|ref|YP_001505540.1| NusA antitermination factor [Frankia sp. EAN1pec] gi|158108437|gb|ABW10634.1| NusA antitermination factor [Frankia sp. EAN1pec] Length = 361 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 203/338 (60%), Gaps = 28/338 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D ++ + ++ A + G+ D RV I+ +G++++F Sbjct: 14 EKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Y ++ D+ Sbjct: 59 -----ARESGPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVTYGQYADRE 110 Query: 139 GEIISGTVKRVE--YGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 E++SG V+ E G+ V+VDLG +GV+ E + E L GDR+K Y+ V R Sbjct: 111 HEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYVVHVARGMH 170 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S + ++P GAC Sbjct: 171 GPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAAGVNPKGAC 230 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G GSRV+AV+ EL EKIDIV WS D A+FV +AL PA V++V + + R V+VP Sbjct: 231 IGPMGSRVRAVMAELHGEKIDIVDWSADPASFVGSALSPARVSRVEVTDLASRSARVVVP 290 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 QLSLAIGR GQN RLA++LTGW IDI ++ E S R Sbjct: 291 DYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGSEPR 328 >gi|300727483|ref|ZP_07060874.1| transcription termination factor NusA [Prevotella bryantii B14] gi|299775186|gb|EFI71787.1| transcription termination factor NusA [Prevotella bryantii B14] Length = 420 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 138/355 (38%), Positives = 218/355 (61%), Gaps = 8/355 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV E+E+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEIEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR +P ++G VS+ + FGR AV + +Q + K+ E E D Y ++KD+ Sbjct: 84 QISLTEARKIEPDYEVGEDVSEKVDFSKFGRRAVLNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V ++ V IVD N++ ++ + E I + R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQIWKREVLIVDDENNELILPKSEQIPADQYRKGETVRAVIARVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + ++E+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPAKVSSININEEEKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII-----TEEEDSINRQKDFNERTQFFMQAI 366 +SLAIGR G N++LAS LT +TID+ E ED I + +E Q+ + AI Sbjct: 324 VSLAIGRGGLNIKLASMLTEFTIDVFREIDENEAEDDIYLDEFSDEIDQWVIDAI 378 >gi|328465727|gb|EGF36931.1| transcription elongation factor NusA [Lactobacillus helveticus MTCC 5463] Length = 405 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 210/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 16 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 76 VVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ + Sbjct: 136 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 196 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 256 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 315 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 356 >gi|227878819|ref|ZP_03996726.1| transcription elongation factor NusA [Lactobacillus crispatus JV-V01] gi|227861567|gb|EEJ69179.1| transcription elongation factor NusA [Lactobacillus crispatus JV-V01] Length = 407 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 208/341 (60%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 134 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 194 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E E Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESE 354 >gi|257457666|ref|ZP_05622833.1| transcription elongation factor NusA [Treponema vincentii ATCC 35580] gi|257445052|gb|EEV20128.1| transcription elongation factor NusA [Treponema vincentii ATCC 35580] Length = 485 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 238/419 (56%), Gaps = 18/419 (4%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISLFRLLEVVEEVEN 74 A EK +D D+ + ++ +++ A ++ + T ++ V TGD I+++ ++V++V Sbjct: 13 ALEKELDEDLAIKIVEQTLKAAYKTAFKTDANAVVI----TGDDAINIYARKKIVDDVVK 68 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ ++ A P +IG + L P DF R ++Q+ Q + Q RE ++D Y E+ Sbjct: 69 PELEVDIEEATKLAPDCEIGDELLFELDPKDFKRGSIQAGVQRVHQSTREIQKDSIYSEY 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K GEII G +R + N+ VDLG +G++ R + +E P DR+K+ I +V++ ++ Sbjct: 129 KAKEGEIIIGYYQRKKNDNIYVDLGKVEGLLPRKFQLPQEIYHPNDRIKALIKEVKKHRQ 188 Query: 195 GP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 Q++LSRT P F+ +L +EVPEIY+ IV++ + R+PG R K+AV S +DPVG Sbjct: 189 SNVVQLILSRTDPDFVRRLMELEVPEIYDNIVELYKIVREPGYRTKVAVISHREDVDPVG 248 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVI 311 ACVG +GSR+Q ++TEL EKID++ +S D A F+ NAL PA ++ V+LD + + Sbjct: 249 ACVGPKGSRIQTIITELEGEKIDVLEYSSDPAVFIANALSPAEVLNVVILDAEKRMALAV 308 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE---------EDSINRQKDFNERTQFF 362 V + QLS+AIG++G NVRLA++L W+ID+ TE+ E ++ FN+ Sbjct: 309 VAESQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFQEMDIHAETRKAAEELFNDDAVLL 368 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +D + L VE+L + E+ ++ G EE A ++ E E ID Sbjct: 369 KDVEGIDPGVLAALHENHIETVEQLLDIPHEELRALPGMSEEKAAALEALINETFEIID 427 >gi|269303191|gb|ACZ33291.1| transcription termination factor NusA [Chlamydophila pneumoniae LPCoLN] Length = 434 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/428 (34%), Positives = 236/428 (55%), Gaps = 25/428 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F E+ Sbjct: 5 LVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCEKEI 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R AERD Sbjct: 65 VEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHAERD 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E++ +V EI+SG VKR G N+I+DLG + ++ E + GD++ + +Y Sbjct: 125 VIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYALLY 184 Query: 188 DVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV SSD Sbjct: 185 EVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRSSDP 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + ED Sbjct: 245 KTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILEDDK 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN-----ERTQF 361 I ++V + IG+RG N RL SQ+ + ++ + R ++N +R Q Sbjct: 305 VIAIVVNDADYATVIGKRGINARLISQILDYELE--------VQRMSEYNKLLEIQRLQL 356 Query: 362 F----------MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 ++ + +++ L G+ + + +++AS+ G E A +I Sbjct: 357 AEFDSPHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILE 416 Query: 412 RAREYLEG 419 + +Y E Sbjct: 417 QVSKYGES 424 >gi|169334799|ref|ZP_02861992.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM 17244] gi|169257537|gb|EDS71503.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM 17244] Length = 394 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 217/355 (61%), Gaps = 21/355 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ D + K ID++ ++ + ++ A + T D+ V IN +G I F + Sbjct: 15 DFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSKQ 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEVE+ +ISL A D S +G + + P FGR+A Q+AKQ+IIQK++E+ER Sbjct: 75 IVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESER 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----------------VIVDLGNSDGVIRRDETI 171 + F K E+++G ++R EY + +DLG ++G++ + Sbjct: 135 NIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGKAEGIMNSQNQV 194 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E+ PG R+K Y+ DV +GPQ++LSRTHP + +LF EV EI +GIV++K++SR Sbjct: 195 RSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSISR 254 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + GSR+K+AV+++D IDPVG C+G +G R+Q V+ E+ DEKIDI+ +S D ++ NAL Sbjct: 255 EAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKNAL 314 Query: 292 RPAIVTKVVL---DEDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 PA V +V + +E+ G+ V+V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 315 APADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDI 369 >gi|226355942|ref|YP_002785682.1| transcription elongation factor NusA [Deinococcus deserti VCD115] gi|226317932|gb|ACO45928.1| putative Transcription elongation factor NusA [Deinococcus deserti VCD115] Length = 395 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/336 (40%), Positives = 215/336 (63%), Gaps = 4/336 (1%) Query: 10 LQIADA---VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 + ADA VA ++I+ ++ S+ +A I V ++P++G++ + + Sbjct: 6 INFADALREVAQARNINELQLIEAFEQSLAQAYTRNVEPDKRIEVHLDPQSGELEVLVVR 65 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE+VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE E Sbjct: 66 EVVEKVEDEHLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+KD+ G++++ V R + GN V+LG + ++ E I E L PG+RVK Y Sbjct: 126 RNVVFNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGNRVKIY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +GP +L SR + + L E+PE+ NGIV+VKA+SR+ G R+K+AVFS + Sbjct: 186 LKEVRKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAISREAGQRSKVAVFSHN 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DP+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D Sbjct: 246 SNVDPIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGLIEVQPDR 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ Sbjct: 306 REATVTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDL 341 >gi|300361902|ref|ZP_07058079.1| transcription termination factor NusA [Lactobacillus gasseri JV-V03] gi|300354521|gb|EFJ70392.1| transcription termination factor NusA [Lactobacillus gasseri JV-V03] Length = 416 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 132/342 (38%), Positives = 216/342 (63%), Gaps = 9/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 14 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 133 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 134 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRV 190 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 191 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 250 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 251 DPDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGD 310 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D + VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E Sbjct: 311 DDKNAL-VIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPE 351 >gi|293381214|ref|ZP_06627222.1| transcription termination factor NusA [Lactobacillus crispatus 214-1] gi|290922254|gb|EFD99248.1| transcription termination factor NusA [Lactobacillus crispatus 214-1] Length = 397 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/399 (36%), Positives = 228/399 (57%), Gaps = 7/399 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +D+++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENTKGIKQDIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LT + IDI E E +E+T A Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEF-----VDEKTNDTADA 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + E ++ + ADVE E +S E EE Sbjct: 359 ADSSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE 397 >gi|311748745|ref|ZP_07722530.1| transcription termination factor NusA [Algoriphagus sp. PR1] gi|126577279|gb|EAZ81527.1| transcription termination factor NusA [Algoriphagus sp. PR1] Length = 414 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/333 (37%), Positives = 213/333 (63%), Gaps = 6/333 (1%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV----EEV 72 A K++DR ++ ++ D + R + + V IN + GD+ +FR+ E+V E++ Sbjct: 14 ARSKNVDRPTMIRILEDVFRAMIRKKFENDENFDVTINADKGDLEIFRIREIVDDNSEDI 73 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 ++ +ISL AR +P +IG V + + +FGR AVQ A+Q +IQ++++ E+D Y Sbjct: 74 WDFD-KISLTEARKIEPDFEIGEEVYEKIELEEFGRRAVQMARQTLIQRIKDLEKDILYN 132 Query: 133 EFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 +++++VGEI+S V ++ V++ D ++ ++ + E I ++ R GD VK+ ++ V Sbjct: 133 KYEEQVGEIVSAEVYQILGREVLLMDNEGNELILPKGEQIPKDRFRKGDAVKAIVHRVDM 192 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 P+++LSRT P F+ +LF EVPE+Y+G++ + + R+PG RAK+AV S D IDPV Sbjct: 193 MNGNPKIILSRTSPVFLERLFENEVPEVYDGLITIVKIVREPGERAKVAVESYDDRIDPV 252 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVGM+GSR+ AVV EL++E ID++ ++ + +V AL PA V+ + D++ RI V Sbjct: 253 GACVGMKGSRIHAVVRELQNENIDVINFTDNLDLYVTRALSPAKVSSITADQETKRISVF 312 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +Q+SLAIG+ G N++LAS+L G+ ID+ E Sbjct: 313 LKPDQVSLAIGKGGYNIKLASKLVGYEIDVFRE 345 >gi|21905243|gb|AAM80105.1| putative transcription termination-antitermination factor [Streptococcus pyogenes MGAS315] Length = 381 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 204/343 (59%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK ID+ ++ + +S++ A + YG +E N +T D +F + EVVEEV + + Sbjct: 11 EKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVREVVEEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ + E+K+ Sbjct: 71 ISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMREVMFNEYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y V +G V Sbjct: 131 GEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVYKVENNPKGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 GS ++ V+++ +E ID++ W D A F+ NA+ PA V V+ DE Sbjct: 251 GSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAPAEVDMVLFDDE 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|259503125|ref|ZP_05746027.1| N utilization substance protein A [Lactobacillus antri DSM 16041] gi|259168991|gb|EEW53486.1| N utilization substance protein A [Lactobacillus antri DSM 16041] Length = 389 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/352 (38%), Positives = 211/352 (59%), Gaps = 20/352 (5%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + + ++ E Sbjct: 6 DYLEKEKGIKKEIVIEALEQALESAYKQNYGD-KNVEVEFNATTGNIKVYAVKTITDDEE 64 Query: 74 NYTCQ----ISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +SL AR D+ + + + P +FGR+A Q+AKQV++Q++RE ER Sbjct: 65 KVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQVVMQRLREEER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 Y ++K EII+G V R + VDLG+ +G + + + E+ R DR++ Y+ Sbjct: 125 RIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYRVHDRIQVYV 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+AV+S+D Sbjct: 185 SKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVAVYSNDD 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ ++ V Sbjct: 245 NVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVIFNDPVT 304 Query: 307 ------------RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP +QLSLAIG+RGQN RLA++LT + IDI + E Sbjct: 305 IEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKSASE 356 >gi|320334652|ref|YP_004171363.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211] gi|319755941|gb|ADV67698.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211] Length = 397 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/327 (40%), Positives = 210/327 (64%), Gaps = 1/327 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 VA ++I+ ++ S+ +A + V ++P++G+I + + EVVE+VE+ Sbjct: 13 VAQSRNINEMQLIEAFEQSLAQAYTRNVDPDKRVEVHLDPKSGEIEVLVVKEVVEKVEDE 72 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 QISL A + DP ++G + P+ F R+A+Q+AKQ + QK+RE ER+ + E+K Sbjct: 73 NVQISLADALELDPEAELGEEMVFPVEREKFTRIALQAAKQTLTQKMRETERNVVFNEYK 132 Query: 136 DKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 DK G++++ V R++ GN VDLG + ++ + E I E L PG+RVK Y+ +VR+ + Sbjct: 133 DKEGQVLNAVVARLDNKGNYFVDLGAGEAILPQREAIPGERLMPGNRVKIYLKEVRKTPK 192 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS + ++DP+GAC Sbjct: 193 GPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNPNVDPIGAC 252 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 +G RG+R+QAV EL E++D+++W F+ NAL PA V + ++ D V V Sbjct: 253 IGHRGNRIQAVTGELGRERVDVILWDATPREFIRNALSPAKVGLIEVNADTREATVTVTP 312 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++LTG+ +D+ Sbjct: 313 DQLSLAIGKGGQNVRLAAKLTGYKVDL 339 >gi|108804247|ref|YP_644184.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941] gi|108765490|gb|ABG04372.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941] Length = 381 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/338 (39%), Positives = 198/338 (58%), Gaps = 30/338 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL + EK I + V V+ +S+ A R G + V ++ ETGD L V Sbjct: 5 LLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGD------LRV 58 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 +++ E+ T + DF R+A +Q +Q++ E Sbjct: 59 MKDGEDITPE------------------------DFDFTRIAASLMRQNFMQRLNEVHNQ 94 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ +++G++++G V++ I+DLG + ++ E + E G R+K Y+ D Sbjct: 95 QLVKEYGERIGDVVTGIVQQAHRRMTIIDLGRVEALLPASEQVPGERYENGQRLKVYLLD 154 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 ++ RGP +++SR H + LF +EVPEIY+G+V++KAV+R+ G R+K+AV+S++ I Sbjct: 155 IKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAVWSNEPGI 214 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVG RGSRV+AVV+ELR+EKIDI+ W PD A F+ AL PA V +V LDE+ + Sbjct: 215 DPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYLDEEEKQA 274 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 EVIVP +QLSLAIGR GQN RLA +LT W IDI E + Sbjct: 275 EVIVPDDQLSLAIGREGQNARLAVKLTDWKIDIKPESQ 312 >gi|110639790|ref|YP_680000.1| transcription elongation factor NusA [Cytophaga hutchinsonii ATCC 33406] gi|110282471|gb|ABG60657.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] Length = 418 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/333 (37%), Positives = 209/333 (62%), Gaps = 8/333 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-----EEVEN 74 KSIDR ++ ++ D + R YGT + V IN + GD+ ++ + E+V E+ + Sbjct: 17 KSIDRPTMMKIVEDVFRTMIRKKYGTDDNFNVIINVDKGDLEIWWMREIVSDDFAEDSFD 76 Query: 75 Y--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 Y ISL A + + G V+ + DFGR VQ+A+Q +IQKV++ E+D + Sbjct: 77 YDPNKHISLTDAHLIEKDFEEGEEVATEVKLEDFGRRMVQTARQTLIQKVKDLEKDNLFQ 136 Query: 133 EFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++KD VGEII+G + +V ++ +D ++ + + E I ++ R GD V++ ++ V Sbjct: 137 KYKDLVGEIINGEIYQVLSKEILLIDADGNELALPKYEQIPKDRFRKGDNVRAIVHRVEM 196 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 P+++LSRT P+F+ +LF +EVPE+Y+G++ ++ + R+PG RAK+AV S D IDPV Sbjct: 197 HNGNPKIILSRTSPKFLERLFELEVPEVYDGLISIRNIVREPGERAKVAVESYDDRIDPV 256 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA ++ + ++ D GR V Sbjct: 257 GACVGMKGSRIHSIVRELENENIDVINFTDNIDLFIARALSPAKISSLKVEADKGRASVY 316 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +Q+SLAIG+ GQN++LAS+L G ID+ E Sbjct: 317 LKPDQVSLAIGKGGQNIKLASKLVGLEIDVFRE 349 >gi|327398877|ref|YP_004339746.1| NusA antitermination factor [Hippea maritima DSM 10411] gi|327181506|gb|AEA33687.1| NusA antitermination factor [Hippea maritima DSM 10411] Length = 360 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 210/335 (62%), Gaps = 2/335 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+LQIA ++ E ID + V+ +A++++ A + YG +D+R+E + + +I + + Sbjct: 3 EILQIAKKISEEHEIDLERVVEYLAEALKIAIQKKYGDEADVRIETDVDN-EIFDVYVKK 61 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E QISL+ A+ P +G V + + GR+AV + K VI + +R+ E+ Sbjct: 62 KVVEKPMLDSQISLEEAKAIKPDAKVGDYVEEKVDAKSLGRIAVTTIKNVITKLLRDIEK 121 Query: 128 DRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y E+K+ +G+II G V + NVIVD N+ GV+ + E + G+ +K+Y+ Sbjct: 122 HKAYEEYKEYIGKIIVGEVWSIGSNNNVIVDFKNAIGVLPKREQGINDKYVVGEHIKAYV 181 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV E + +++LSRTHP F+ +LF EVPE+ G V++KAV+R+P R K+AV+S DS Sbjct: 182 LDVLEEAKQVRLILSRTHPGFVKELFKKEVPEVREGSVEIKAVAREPSRRTKVAVYSKDS 241 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDP+G CVG +G R+ A+V EL DEKID++ WS D + ++ NA+ PA V V +DED+ Sbjct: 242 RIDPIGTCVGSKGVRIAAIVRELGDEKIDVIKWSADPSIYIRNAMSPAKVISVEIDEDLK 301 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +V V + S+AIG+ G N +LA++LTG+ IDI Sbjct: 302 KAKVYVDDAEYSMAIGKGGVNAKLAAKLTGYNIDI 336 >gi|198277417|ref|ZP_03209948.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135] gi|198269915|gb|EDY94185.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135] Length = 419 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 129/329 (39%), Positives = 207/329 (62%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV EE+ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEELTNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG +IS V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTVISAEVYQIWKKEILLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDERIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ +++ ED R EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKVSSIIMHEDEKRAEVYLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVYRE 348 >gi|24378911|ref|NP_720866.1| transcription elongation factor NusA [Streptococcus mutans UA159] gi|290581068|ref|YP_003485460.1| putative transcription factor [Streptococcus mutans NN2025] gi|24376794|gb|AAN58172.1|AE014888_10 putative transcription factor NusA [Streptococcus mutans UA159] gi|254997967|dbj|BAH88568.1| putative transcription factor [Streptococcus mutans NN2025] Length = 397 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 208/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E + ++GD +F + E Sbjct: 4 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQAESAEIEFDEKSGDFKVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISTAYELGDKIRFEESPKEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ EI++GTV+R + + V+LG + + R + + E DR++ Y+Y Sbjct: 124 EVTFNEYKEHEREIMTGTVERFDNRFIYVNLGTIEAQLSRQDQVPGETFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG +G+ ++ V ++ +E +D++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRKGANIKKVTSKFHPKRFDQKTGLWVPMEENVDVIEWVDDPAEFIYNAVAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDQVLFDEEDDKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|329964512|ref|ZP_08301566.1| transcription termination factor NusA [Bacteroides fluxus YIT 12057] gi|328524912|gb|EGF51964.1| transcription termination factor NusA [Bacteroides fluxus YIT 12057] Length = 423 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/329 (38%), Positives = 210/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVVE E+EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVEDAELENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ D S ++G V+D + +FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEEHKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|319790652|ref|YP_004152285.1| NusA antitermination factor [Thermovibrio ammonificans HB-1] gi|317115154|gb|ADU97644.1| NusA antitermination factor [Thermovibrio ammonificans HB-1] Length = 380 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/350 (42%), Positives = 216/350 (61%), Gaps = 25/350 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I ++ V+ + I AA+ G D+ V+I+ + D +++ +VVEEV + + Sbjct: 14 EKGISKEDVIEAVKVGIINAAKKA-GYRGDLVVKIDEDGKDFGIYQRKKVVEEVTDPDHE 72 Query: 79 ISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ISL+ AR+ + +G V + + GR+A ++A QVI K+ EAER + F+ K Sbjct: 73 ISLEEARELFGDQVKLGDEVLIEIKTEELGRIAAKAAAQVIHDKITEAERRALFDYFRQK 132 Query: 138 VGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV----RRE 192 +G++ISGTVK ++ G+++VDLG GV+ ++E I +E R GDRV++YIYDV +R Sbjct: 133 IGDVISGTVKEIKRNGDIVVDLGRVIGVLPKEEQIPKERYRIGDRVRAYIYDVVFDYKRY 192 Query: 193 QRG----------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 R P V+LSRTHP+ + +L +E+PE+ G+V+VKAV+R+PG RAK+AV Sbjct: 193 NRKKPSRIDDYPPPYVILSRTHPKLLKRLMEIEIPEVAEGLVEVKAVAREPGVRAKVAVD 252 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + IDPVGAC+G++GSR+ + EL EKI+I+ WS D A V AL PA V + Sbjct: 253 SKEDYIDPVGACIGVKGSRILPISRELSGEKIEIIRWSDDVAELVARALSPAKVIQAESY 312 Query: 303 EDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT-----IDIITE 344 ED R+EV+VP +QLSLAIG+ G N RLAS+L G IDII E Sbjct: 313 EDENGEFRVEVVVPDDQLSLAIGKHGVNARLASKLAGQAGHVVGIDIIKE 362 >gi|255530056|ref|YP_003090428.1| transcription elongation factor NusA [Pedobacter heparinus DSM 2366] gi|255343040|gb|ACU02366.1| transcription termination factor NusA [Pedobacter heparinus DSM 2366] Length = 411 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/329 (37%), Positives = 209/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R YGT + V +NP+ GD+ ++R +V+E+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L + DP +++G + + FGR A+ +A+Q ++ KV E E+D + ++KD+ Sbjct: 77 EIELAEVKQLDPDMEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGEI++G V +V +V D GN + ++ + E I + + GD V++ I V Sbjct: 137 VGEIVTGEVYQVWKKETLVLDDEGN-ELMMPKTEQIPADYFKKGDTVRAVILKVDMVNAT 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++++SR P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACV Sbjct: 196 PKIIISRIAPEFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T + LD++ V + + Sbjct: 256 GMKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 Q+SLAIGR G N++LA +LTG+ ID+ E Sbjct: 316 QVSLAIGRGGHNIKLAGKLTGYEIDVYRE 344 >gi|325126000|gb|ADY85330.1| Transcription termination-antitermination factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 468 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/342 (40%), Positives = 212/342 (61%), Gaps = 3/342 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 66 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 125 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 126 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 185 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 186 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 245 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 246 TKVGADGKGAQIRVSRTPPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 305 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V DED Sbjct: 306 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 365 Query: 306 GRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 366 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 407 >gi|103423295|emb|CAI98136.1| Transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 402 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/341 (40%), Positives = 211/341 (61%), Gaps = 3/341 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L V Sbjct: 1 MLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKTV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 61 VDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAENA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 121 HIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLVT 180 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D + Sbjct: 181 KVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDPN 240 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V DED Sbjct: 241 IDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDDE 300 Query: 307 RIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 R VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 301 RKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 341 >gi|189459826|ref|ZP_03008611.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136] gi|189433436|gb|EDV02421.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136] Length = 418 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/329 (39%), Positives = 208/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV +E+ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADDELTNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ V++ + V + Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGN-ELLLPKTEQIPSDFYRKGETVRAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPMFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDERIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + FV AL PA V+ +++ E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFVQRALSPAKVSSIIMHEEEKKAEVYLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGMNIKLASMLTEYTIDVYRE 348 >gi|296877069|ref|ZP_06901110.1| transcription termination factor NusA [Streptococcus parasanguinis ATCC 15912] gi|296431930|gb|EFH17736.1| transcription termination factor NusA [Streptococcus parasanguinis ATCC 15912] Length = 380 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLERMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|239617901|ref|YP_002941223.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239506732|gb|ACR80219.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 130/323 (40%), Positives = 202/323 (62%), Gaps = 1/323 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K+I +D V+S++ ++Q A R +GT +++ V I+ TGDI+++ L+VV+EVEN +I Sbjct: 16 KNIKKDEVISILEKALQSAYRKNFGTENEVEVRIDRLTGDIAIYEKLKVVDEVENPYREI 75 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 +L A+ D +I G V L F R+A Q+A+QV+IQK+RE E++ + + G Sbjct: 76 TLSEAKKIDSDAEIDGYVYRKLNIKKFKRIAAQTARQVLIQKIREMEKENLFQTYSALKG 135 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 + + + RV + +G + + E I E LR G +K ++ DV R +GP++L Sbjct: 136 SVTTAEILRVTENWADIRIGKLESRLPTREMIPGERLRAGSFIKVFVVDVVRTTKGPKIL 195 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 ++R +F+V+L ++VPEI +G V VKAV+R+ G R K+AV S++ +DP+GAC+G G Sbjct: 196 VTRKGTEFVVELLKLQVPEIESGDVVVKAVAREEGIRTKVAVASTNPKVDPIGACIGEGG 255 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI-VPKEQLS 318 R+ V+ E+R EK+DI+ WS D A FV NA+ PA +V + R V+ V QLS Sbjct: 256 VRIAEVLREIRPEKVDILKWSDDPAEFVGNAIAPATAVEVKIVSSANREAVVYVSPTQLS 315 Query: 319 LAIGRRGQNVRLASQLTGWTIDI 341 LAIG+ GQN RLA++LTGW +DI Sbjct: 316 LAIGKGGQNARLAAKLTGWKVDI 338 >gi|312867863|ref|ZP_07728068.1| transcription termination factor NusA [Streptococcus parasanguinis F0405] gi|311096618|gb|EFQ54857.1| transcription termination factor NusA [Streptococcus parasanguinis F0405] Length = 380 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 210/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA Q+AKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQAAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI ++ E Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSDSE 357 >gi|55820434|ref|YP_138876.1| transcription elongation factor NusA [Streptococcus thermophilus LMG 18311] gi|55822318|ref|YP_140759.1| transcription elongation factor NusA [Streptococcus thermophilus CNRZ1066] gi|55736419|gb|AAV60061.1| transcription termination-antitermination factor [Streptococcus thermophilus LMG 18311] gi|55738303|gb|AAV61944.1| transcription termination-antitermination factor [Streptococcus thermophilus CNRZ1066] Length = 395 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + E Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|322391042|ref|ZP_08064546.1| transcription elongation factor NusA [Streptococcus parasanguinis ATCC 903] gi|321142272|gb|EFX37746.1| transcription elongation factor NusA [Streptococcus parasanguinis ATCC 903] Length = 380 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 209/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|295132451|ref|YP_003583127.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87] gi|294980466|gb|ADF50931.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87] Length = 410 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 206/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + YG + + +NP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIWRNRVVVADGEVEDPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 QEISLAEARKIEPDFEVGEDVSEEVKLKDLGRRAILALRQNLISKIHEHDNTNIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI + V + + +I+ D GN + V+ +D I + R G+ V+ I V + Sbjct: 136 LEGEIYTAEVHHIRHRAIILLDDEGN-EIVLPKDRQIPSDFFRKGENVRGVIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P ++LSRT P F+ KLF E+PE+++G++ +K V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPSIILSRTAPAFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T + +DE+ R EV++ Sbjct: 255 VGMKGSRIHSIVRELGNENIDVINYTNNDQLFITRALSPAKITSIKIDEENKRAEVMLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEED 349 >gi|291166364|gb|EFE28410.1| transcription termination factor NusA [Filifactor alocis ATCC 35896] Length = 412 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 220/353 (62%), Gaps = 16/353 (4%) Query: 7 LELLQIADAVAYEKS-IDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +++A AY+K+ ++++ + ++K + L ++++V I+ ETGDI +F Sbjct: 24 IEAVEMALVKAYKKNFVEKNNYNDTL---VEKDPKKLSLEKNNVQVSIDRETGDIKVFSK 80 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV E++ +ISL+ A++ D + +G +V + + P +FGR+A Q+A+QV+IQK+ Sbjct: 81 KEVVNKREIDLLEGEISLEGAQEIDINYKVGDIVQEEITPRNFGRIATQTARQVVIQKIT 140 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGNS---DGVIRRDETISR 173 EA RD Y EF ++ EI+ G V R+ N ++ + G++ + + E I Sbjct: 141 EAGRDIIYNEFSNRESEIMIGEVVRIGKHNTCHLNLSLVSEKGHTIYGEATMISQEQIPY 200 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E G R+ YI +V++ PQ+L+SR+ P + +LF EVPEI +GIVQ+K+++R+ Sbjct: 201 EEYSVGQRIIVYILEVKKHNNVPQILVSRSRPGLVKRLFEREVPEISDGIVQIKSIAREA 260 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSR KL+V S D S+D +GACVG +G RV +V EL EKIDIV + + ++ NAL P Sbjct: 261 GSRTKLSVCSVDPSVDAIGACVGGKGIRVANIVEELHGEKIDIVNYDENPIEYISNALSP 320 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + V V ++E+ +VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 321 SKVVDVSVNEEEKTAKVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 373 >gi|325299860|ref|YP_004259777.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170] gi|324319413|gb|ADY37304.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170] Length = 423 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 129/329 (39%), Positives = 208/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E+ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDFANPNR 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ D+ Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDR 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ V++ + V + Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGN-ELLLPKAEQIPSDFYRKGETVRAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P+F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTAPEFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ +V+ E+ R EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPATVSSIVMHEEEKRAEVYLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGMNIKLASMLTEYTIDVYRE 348 >gi|160887870|ref|ZP_02068873.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492] gi|317477855|ref|ZP_07937041.1| transcription termination factor NusA [Bacteroides sp. 4_1_36] gi|156862556|gb|EDO55987.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492] gi|316905991|gb|EFV27759.1| transcription termination factor NusA [Bacteroides sp. 4_1_36] Length = 421 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 214/334 (64%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ D S ++G V+D + +FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEERKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E +++I Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAI 353 >gi|319900402|ref|YP_004160130.1| NusA antitermination factor [Bacteroides helcogenes P 36-108] gi|319415433|gb|ADV42544.1| NusA antitermination factor [Bacteroides helcogenes P 36-108] Length = 421 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/329 (38%), Positives = 208/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV + VEN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADADVENSNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI L AR D S ++G V+D + +FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIPLSEARKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKIMELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPIFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEEHKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|270294867|ref|ZP_06201068.1| transcription termination factor NusA [Bacteroides sp. D20] gi|270274114|gb|EFA19975.1| transcription termination factor NusA [Bacteroides sp. D20] Length = 421 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 214/334 (64%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ D S ++G V+D + +FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEERKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E +++I Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAI 353 >gi|306832818|ref|ZP_07465953.1| transcription termination factor NusA [Streptococcus bovis ATCC 700338] gi|304425053|gb|EFM28184.1| transcription termination factor NusA [Streptococcus bovis ATCC 700338] Length = 399 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGIEVPIEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 355 >gi|320547937|ref|ZP_08042220.1| transcription termination factor NusA [Streptococcus equinus ATCC 9812] gi|320447477|gb|EFW88237.1| transcription termination factor NusA [Streptococcus equinus ATCC 9812] Length = 389 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 360 >gi|306830580|ref|ZP_07463747.1| transcription termination factor NusA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977559|ref|YP_004287275.1| transcription elongation protein nusA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304427298|gb|EFM30403.1| transcription termination factor NusA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177487|emb|CBZ47531.1| Transcription elongation protein nusA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 399 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 360 >gi|255692953|ref|ZP_05416628.1| transcription termination factor NusA [Bacteroides finegoldii DSM 17565] gi|260621264|gb|EEX44135.1| transcription termination factor NusA [Bacteroides finegoldii DSM 17565] Length = 421 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 213/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++S+ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDESV 353 >gi|330466360|ref|YP_004404103.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] gi|328809331|gb|AEB43503.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] Length = 347 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 202/340 (59%), Gaps = 29/340 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I D +L+ + ++ A R G S RVEI+ ++G Sbjct: 10 ALEREREIPFDTILAAIETALLTAYRHTEGAQSHARVEIDRKSG---------------- 53 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +L A++ DP GGVV + P DFGR+A +AKQVI+Q++REA + + E Sbjct: 54 ----AALVYAQEMDPE---GGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGE 106 Query: 134 FKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ + V Sbjct: 107 YVGRDGDLVTGVVQAHEARAEKGIVTVDLGKLEGVLPQSEQVPGERYTHGERIRCVVVHV 166 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ ++ Sbjct: 167 AKGMRGPQITLSRTHPNLVKKLFALEVPEIADGTVEISAIAREAGHRTKIAVRSTTPGVN 226 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 227 AKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLANRAA 286 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 287 RVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQA 326 >gi|315606722|ref|ZP_07881732.1| transcription termination factor NusA [Prevotella buccae ATCC 33574] gi|315251577|gb|EFU31556.1| transcription termination factor NusA [Prevotella buccae ATCC 33574] Length = 421 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/328 (39%), Positives = 207/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A+ +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 EISLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++ I V E P Sbjct: 144 VGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGMNIKLASMLTEYTIDVFRE 351 >gi|254479107|ref|ZP_05092459.1| transcription termination factor NusA [Carboxydibrachium pacificum DSM 12653] gi|214034956|gb|EEB75678.1| transcription termination factor NusA [Carboxydibrachium pacificum DSM 12653] Length = 227 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 113/222 (50%), Positives = 156/222 (70%), Gaps = 1/222 (0%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K Sbjct: 1 EAERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIK 60 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS Sbjct: 61 VYIVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFS 120 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 D ++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V ++D Sbjct: 121 RDPNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVD 180 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 E VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 181 EKEKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSE 222 >gi|126663078|ref|ZP_01734076.1| transcription elongation factor NusA [Flavobacteria bacterium BAL38] gi|126624736|gb|EAZ95426.1| transcription elongation factor NusA [Flavobacteria bacterium BAL38] Length = 413 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 212/339 (62%), Gaps = 9/339 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + YG+ + + INP+ GD+ ++R VVE EVE+ Sbjct: 16 DKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIWRNRVVVEDGEVEDPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + + GR A+ S +Q +I K+ E + Y +FKD Sbjct: 76 SEISLTEARRIEPDFEVGEDVSEEVKLIQLGRRAILSLRQNLISKIHEHDNTNLYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 +G+I + V V VI+ D GN + V+ +++ I + + GD V+ I +V + Sbjct: 136 LIGDIYTAEVHHVRPKAVILMDDEGN-EIVLPKEKQIPNDYFKKGDNVRGVIENVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 PQ+++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPQIIMSRTAPEFLEKLFEQEIPEVFDGLITIKKVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ V ++E+ EV + Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINFTTNAQLYITRALSPAKVSTVKINEEAKTAEVFLKI 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSI 349 E++S AIGR G N++LAS LTG+ ID+I E EED + Sbjct: 315 EEVSKAIGRGGNNIKLASLLTGYEIDVIREGIAQEEDDV 353 >gi|300871262|ref|YP_003786135.1| putative transcription elongation factor NusA [Brachyspira pilosicoli 95/1000] gi|300688963|gb|ADK31634.1| putative transcription elongation factor, NusA [Brachyspira pilosicoli 95/1000] Length = 495 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 135/394 (34%), Positives = 230/394 (58%), Gaps = 17/394 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D++ V+ + A + YG + + + + +++R + VVEEV++ + Sbjct: 15 EKDISIDLLKEVVESVMILALKKKYGDNVNFHINFD-NNNNPTVYRGVNVVEEVKDDRKE 73 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ISL+ A+ D I++G V + + DFGR+ +AK QK+ E E++ Y EFK + Sbjct: 74 ISLEEAKKLDSDINLGDEVLILVDHVGDFGRIESTAAKTTFFQKISELEKNIIYNEFKRR 133 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG-P 196 ++++G +R GN+ V+LG ++GV+ + + RE+ GDR+++YIY V ++ G P Sbjct: 134 ENQLVNGYFQRENRGNIYVNLGKTEGVLLKKDLSPREHYAAGDRIRAYIYKVENDRSGHP 193 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 + L+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+ +DP+GAC+G Sbjct: 194 TIYLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKIAVVSNKPEVDPIGACIG 253 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKE 315 +G R+QA++ E+ EKID+V WS D ++ A+ PA T++++ D + +I+P + Sbjct: 254 QKGIRIQAIIKEIEGEKIDVVKWSKDIREYIAEAIAPAKPTRIIITDPEKKEAMIIIPDD 313 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA-- 373 QLSLA+GR G NV+LASQLTG+T D+ TE D E + + +++I A Sbjct: 314 QLSLALGRSGYNVKLASQLTGYTFDLKTE--------TDIKENPELLKDIVPLNQIFAEN 365 Query: 374 ---HLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E AD E+ +S + S+ D++ Sbjct: 366 VEENVENEEAIADTEDTQEAAVSNLYSLTDIDKD 399 >gi|322373936|ref|ZP_08048471.1| transcription termination factor NusA [Streptococcus sp. C150] gi|321277308|gb|EFX54378.1| transcription termination factor NusA [Streptococcus sp. C150] Length = 396 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG VE N +TGD ++ + E Sbjct: 4 EMLEAFRVLEEEKHINKDDIIEAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDYVLFDENDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|218131824|ref|ZP_03460628.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697] gi|317474560|ref|ZP_07933834.1| transcription termination factor NusA [Bacteroides eggerthii 1_2_48FAA] gi|217986127|gb|EEC52466.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697] gi|316909241|gb|EFV30921.1| transcription termination factor NusA [Bacteroides eggerthii 1_2_48FAA] Length = 422 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 213/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV +++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADKDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEAQKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEEHKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAV 353 >gi|171778095|ref|ZP_02919352.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283077|gb|EDT48501.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 397 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 355 >gi|150003921|ref|YP_001298665.1| transcription elongation factor NusA [Bacteroides vulgatus ATCC 8482] gi|212692747|ref|ZP_03300875.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855] gi|237709443|ref|ZP_04539924.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA] gi|237724957|ref|ZP_04555438.1| transcription elongation factor NusA [Bacteroides sp. D4] gi|254880838|ref|ZP_05253548.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA] gi|265754642|ref|ZP_06089694.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA] gi|294775077|ref|ZP_06740606.1| transcription termination factor NusA [Bacteroides vulgatus PC510] gi|319639848|ref|ZP_07994577.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A] gi|149932345|gb|ABR39043.1| putative nitrogen utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212664683|gb|EEB25255.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855] gi|229436695|gb|EEO46772.1| transcription elongation factor NusA [Bacteroides dorei 5_1_36/D4] gi|229456499|gb|EEO62220.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA] gi|254833631|gb|EET13940.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA] gi|263234756|gb|EEZ20324.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA] gi|294451121|gb|EFG19592.1| transcription termination factor NusA [Bacteroides vulgatus PC510] gi|317388512|gb|EFV69362.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A] Length = 418 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 211/333 (63%), Gaps = 5/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ D+ Sbjct: 81 QISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSLYNKYIDR 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG +IS V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTVISAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ +VL E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIVLHEEEKKAEVYLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 ++SLAIG+ G N++LAS LT +TID+ E ++S Sbjct: 320 EVSLAIGKGGMNIKLASMLTEYTIDVYRELDES 352 >gi|313115476|ref|ZP_07800941.1| transcription termination factor NusA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622186|gb|EFQ05676.1| transcription termination factor NusA [Faecalibacterium cf. prausnitzii KLE1255] Length = 368 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 140/351 (39%), Positives = 213/351 (60%), Gaps = 8/351 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59 M +AN E + + +E+ I + ++ + +I A + Y D ++V+I+P G Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHVKVDIDPAAGR 59 Query: 60 ISLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + +VV + + Y +I + A+ S ++G + PL DFGR+A Q+AK V Sbjct: 60 FDVALIQDVVADEDWYDEHSEIGITEAQKIRKSYEVGDRIVTPLKTKDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRE 174 I Q +REAER +Q E + + +I+ TV RV E G V +DLG + ++ +E + E Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPHNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G ++ Y+ DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G Sbjct: 180 VYTEGQTLQVYVVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V KV +L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPE 350 >gi|312862513|ref|ZP_07722755.1| transcription termination factor NusA [Streptococcus vestibularis F0396] gi|322517414|ref|ZP_08070287.1| transcription termination factor NusA [Streptococcus vestibularis ATCC 49124] gi|311101918|gb|EFQ60119.1| transcription termination factor NusA [Streptococcus vestibularis F0396] gi|322123896|gb|EFX95455.1| transcription termination factor NusA [Streptococcus vestibularis ATCC 49124] Length = 399 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + E Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGALEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|288904585|ref|YP_003429806.1| transcription termination factor NusA [Streptococcus gallolyticus UCN34] gi|288731310|emb|CBI12861.1| Transcription termination factor NusA [Streptococcus gallolyticus UCN34] Length = 396 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|319947585|ref|ZP_08021815.1| transcription elongation factor NusA [Streptococcus australis ATCC 700641] gi|319746273|gb|EFV98536.1| transcription elongation factor NusA [Streptococcus australis ATCC 700641] Length = 381 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLDAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQAESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDEEDSKHALVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|134102374|ref|YP_001108035.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|291004241|ref|ZP_06562214.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|133914997|emb|CAM05110.1| putative transcriptional termination/antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length = 352 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 141/339 (41%), Positives = 200/339 (58%), Gaps = 27/339 (7%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I + VL + ++ A R G RVE++ +TG V V Sbjct: 10 AIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTG----------VVRVIA 59 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +T VA + D + P FGR+A +A+QVI+Q++R+AE +R + EF Sbjct: 60 HTLGADGTVAEEWDDT------------PEGFGRIAATTARQVILQRLRDAEHERTFGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 K GEI+ G ++R N VIV +G+S+GVI E + E G R+K Y+ V Sbjct: 108 STKEGEILGGVIQRDAKANSRGMVIVQVGDSEGVIPAAEQVPGERYEHGMRIKCYVVGVS 167 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV S+ ++ Sbjct: 168 RSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTVGGVNA 227 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G+RV+ V++EL EKIDI+ +S D ATFV NAL PA V V V+DE Sbjct: 228 KGACIGPMGARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDERAKTAR 287 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + S Sbjct: 288 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDADPS 326 >gi|325105520|ref|YP_004275174.1| NusA antitermination factor [Pedobacter saltans DSM 12145] gi|324974368|gb|ADY53352.1| NusA antitermination factor [Pedobacter saltans DSM 12145] Length = 411 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 208/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R +GT + V +NP+ GD+ ++R V+E+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKRFGTDENCDVIVNPDNGDLEIWRTRTVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A DP +++G + + FGR A+ +A+Q ++ K+ E E+D + +KD+ Sbjct: 77 EIELADAHKIDPDLEVGDDFIEQITLESFGRRAILAARQTLVSKILELEKDEIFKNYKDR 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +GEI++G V +V +V D GN + ++ + E I + + GD V++ + V Sbjct: 137 IGEIVTGEVYQVWKKETLVLDDEGN-ELILPKTEQIPADYFKKGDSVRAVVLKVDMMNAN 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++++SRT P F+ +LF +EVPE+++G++ +K + R+PG RAK+AV S D IDPVGACV Sbjct: 196 PKIIISRTAPAFLQRLFELEVPEVFDGLITIKNIVREPGERAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ + + ++ AL PA ++ + LD++ R V + + Sbjct: 256 GMKGSRIHGIVRELKNENIDVINFTNNISLYIQRALSPAKISSIKLDDETKRAAVYLKPD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 Q+SLAIGR G N++LA +LTG+ ID+ E Sbjct: 316 QVSLAIGRGGHNIKLAGKLTGYEIDVYRE 344 >gi|322376136|ref|ZP_08050645.1| transcription termination factor NusA [Streptococcus sp. C300] gi|321278904|gb|EFX55948.1| transcription termination factor NusA [Streptococcus sp. C300] Length = 378 Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLETFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|194398628|ref|YP_002037214.1| transcription elongation factor NusA [Streptococcus pneumoniae G54] gi|194358295|gb|ACF56743.1| transcription termination factor NusA [Streptococcus pneumoniae G54] Length = 378 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPXNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|297626628|ref|YP_003688391.1| Transcription termination/ antitermination factor NusA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922393|emb|CBL56965.1| Transcription termination/ antitermination factor NusA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 352 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 139/329 (42%), Positives = 196/329 (59%), Gaps = 24/329 (7%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +EK I D ++ + D++ A V +N TG++S+ + EV +E E+ Sbjct: 10 ALEHEKEIPLDYLVGTLEDALLNAYEKTEHPKPGAHVVLNRRTGEVSVM-VPEVNDEGES 68 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 G D P DFGRVA +A+QVI Q++REAE +++Y +F Sbjct: 69 V-------------------GEYDDT--PTDFGRVAASTARQVIFQRLREAEDEQKYGKF 107 Query: 135 KDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 G+++ G V++ I VDLG+ + ++ E + E+ + G R++ Y+ VR+E Sbjct: 108 SAVEGDVVMGVVQQDRGSKTIRVDLGDIEAIMPLAEQVPGEDYKHGTRLRVYVVTVRKEA 167 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 RGPQV++SRTHP + KLF +EVPEI G+V+VKA++R+ G R K+AV S + + GA Sbjct: 168 RGPQVVVSRTHPNLVKKLFELEVPEIEQGVVEVKAIARESGHRTKIAVVSHNPDVSAKGA 227 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G G RV+AV+ EL DEKIDI+ WS D A FV NAL PA KV V+D VIV Sbjct: 228 CIGPMGQRVRAVMRELNDEKIDIIDWSADPAEFVANALSPAKALKVTVVDAGARAARVIV 287 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P QLSLAIGR GQN RLA++LTGW IDI Sbjct: 288 PDYQLSLAIGREGQNARLAARLTGWRIDI 316 >gi|270292191|ref|ZP_06198406.1| N utilization substance protein A [Streptococcus sp. M143] gi|270279719|gb|EFA25561.1| N utilization substance protein A [Streptococcus sp. M143] Length = 378 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|289167249|ref|YP_003445516.1| transcription termination-antitermination factor [Streptococcus mitis B6] gi|288906814|emb|CBJ21648.1| transcription termination-antitermination factor [Streptococcus mitis B6] Length = 378 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|260101365|ref|ZP_05751602.1| N utilization substance protein A [Lactobacillus helveticus DSM 20075] gi|260084817|gb|EEW68937.1| N utilization substance protein A [Lactobacillus helveticus DSM 20075] Length = 364 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 130/341 (38%), Positives = 209/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++G V+R + V V +GN + ++ + + + E P D+++ + Sbjct: 134 SHIIDEYSQYEDELVTGPVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 194 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE 354 >gi|154491955|ref|ZP_02031581.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC 43184] gi|154088196|gb|EDN87241.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC 43184] Length = 424 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 208/327 (63%), Gaps = 5/327 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+ID+D ++SV+ DS + ++GT + V INPE GD ++R VV +E+E+ Sbjct: 21 KNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDFEIWRNRTVVADDELEDENL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++L AR D ++G V+D + DFGR A+ + +Q + K+ E ++D + ++KDK Sbjct: 81 QLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTLASKILELQKDSLFAKYKDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +G II+ V +V +++ D GN + ++ + E I + R G+ V++ + V Sbjct: 141 IGNIIAADVYQVWKKEILLLDDEGN-ELLLPKTEQIPTDFYRKGETVRAIVQRVDNYNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERAKVAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + ++E+ + EV + E Sbjct: 260 GMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRVNEEEHKAEVYLRPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++SLAIG+ G N++LA LT + ID+ Sbjct: 320 EVSLAIGKGGLNIKLACMLTEYAIDVF 346 >gi|15618236|ref|NP_224521.1| transcription elongation factor NusA [Chlamydophila pneumoniae CWL029] gi|15835851|ref|NP_300375.1| transcription elongation factor NusA [Chlamydophila pneumoniae J138] gi|16752722|ref|NP_444989.1| transcription elongation factor NusA [Chlamydophila pneumoniae AR39] gi|33241661|ref|NP_876602.1| transcription elongation factor NusA [Chlamydophila pneumoniae TW-183] gi|4376593|gb|AAD18465.1| N Utilization Protein A [Chlamydophila pneumoniae CWL029] gi|7189363|gb|AAF38280.1| N utilization substance protein A [Chlamydophila pneumoniae AR39] gi|8978690|dbj|BAA98526.1| N utilization protein A [Chlamydophila pneumoniae J138] gi|33236170|gb|AAP98259.1| transcription termination-antitermination factor [Chlamydophila pneumoniae TW-183] Length = 434 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/428 (34%), Positives = 234/428 (54%), Gaps = 25/428 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F E+ Sbjct: 5 LVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCEKEI 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R AERD Sbjct: 65 VEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHAERD 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E++ +V E +SG VKR G N+I+DLG + ++ E + GD++ + +Y Sbjct: 125 VIYEEYRHRVNETLSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYALLY 184 Query: 188 DVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV SSD Sbjct: 185 EVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRSSDP 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + ED Sbjct: 245 KTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILEDDK 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN-----ERTQF 361 I ++V + IG+RG N RL S + + ++ + R ++N +R Q Sbjct: 305 VIAIVVNDADYATVIGKRGINARLISHILDYELE--------VQRMSEYNKLLEIQRLQL 356 Query: 362 F----------MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 ++ + +++ L G+ + + +++AS+ G E A +I Sbjct: 357 AEFDSPHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILE 416 Query: 412 RAREYLEG 419 + +Y E Sbjct: 417 QVSKYGES 424 >gi|15900465|ref|NP_345069.1| transcription elongation factor NusA [Streptococcus pneumoniae TIGR4] gi|111657275|ref|ZP_01408041.1| hypothetical protein SpneT_02001513 [Streptococcus pneumoniae TIGR4] gi|148983931|ref|ZP_01817250.1| transcription elongation factor NusA [Streptococcus pneumoniae SP3-BS71] gi|148990071|ref|ZP_01821325.1| transcription elongation factor NusA [Streptococcus pneumoniae SP6-BS73] gi|148992337|ref|ZP_01822060.1| transcription elongation factor NusA [Streptococcus pneumoniae SP9-BS68] gi|148998226|ref|ZP_01825695.1| transcription elongation factor NusA [Streptococcus pneumoniae SP11-BS70] gi|149005663|ref|ZP_01829402.1| transcription elongation factor NusA [Streptococcus pneumoniae SP18-BS74] gi|149012573|ref|ZP_01833570.1| transcription elongation factor NusA [Streptococcus pneumoniae SP19-BS75] gi|149021508|ref|ZP_01835563.1| transcription elongation factor NusA [Streptococcus pneumoniae SP23-BS72] gi|168482793|ref|ZP_02707745.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1873-00] gi|168488244|ref|ZP_02712443.1| transcription termination factor NusA [Streptococcus pneumoniae SP195] gi|168490557|ref|ZP_02714700.1| transcription termination factor NusA [Streptococcus pneumoniae CDC0288-04] gi|168576545|ref|ZP_02722419.1| transcription termination factor NusA [Streptococcus pneumoniae MLV-016] gi|169834095|ref|YP_001694040.1| transcription elongation factor NusA [Streptococcus pneumoniae Hungary19A-6] gi|182683486|ref|YP_001835233.1| transcription elongation factor NusA [Streptococcus pneumoniae CGSP14] gi|221231386|ref|YP_002510538.1| N utilization substance protein A [Streptococcus pneumoniae ATCC 700669] gi|225854094|ref|YP_002735606.1| transcription elongation factor NusA [Streptococcus pneumoniae JJA] gi|225856263|ref|YP_002737774.1| transcription elongation factor NusA [Streptococcus pneumoniae P1031] gi|225858391|ref|YP_002739901.1| transcription elongation factor NusA [Streptococcus pneumoniae 70585] gi|225860558|ref|YP_002742067.1| transcription elongation factor NusA [Streptococcus pneumoniae Taiwan19F-14] gi|237650175|ref|ZP_04524427.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI 1974] gi|237821775|ref|ZP_04597620.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI 1974M2] gi|298230907|ref|ZP_06964588.1| transcription elongation factor NusA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255627|ref|ZP_06979213.1| transcription elongation factor NusA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502347|ref|YP_003724287.1| transcription elongation factor NusA [Streptococcus pneumoniae TCH8431/19A] gi|303255252|ref|ZP_07341325.1| transcription elongation factor NusA [Streptococcus pneumoniae BS455] gi|303260042|ref|ZP_07346015.1| transcription elongation factor NusA [Streptococcus pneumoniae SP-BS293] gi|303261226|ref|ZP_07347174.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS292] gi|303263891|ref|ZP_07349812.1| transcription elongation factor NusA [Streptococcus pneumoniae BS397] gi|303267073|ref|ZP_07352944.1| transcription elongation factor NusA [Streptococcus pneumoniae BS457] gi|303269288|ref|ZP_07355062.1| transcription elongation factor NusA [Streptococcus pneumoniae BS458] gi|307126756|ref|YP_003878787.1| transcription termination factor NusA [Streptococcus pneumoniae 670-6B] gi|14972027|gb|AAK74709.1| N utilization substance protein A [Streptococcus pneumoniae TIGR4] gi|147755869|gb|EDK62913.1| transcription elongation factor NusA [Streptococcus pneumoniae SP11-BS70] gi|147762603|gb|EDK69563.1| transcription elongation factor NusA [Streptococcus pneumoniae SP18-BS74] gi|147763378|gb|EDK70315.1| transcription elongation factor NusA [Streptococcus pneumoniae SP19-BS75] gi|147924078|gb|EDK75190.1| transcription elongation factor NusA [Streptococcus pneumoniae SP3-BS71] gi|147924597|gb|EDK75684.1| transcription elongation factor NusA [Streptococcus pneumoniae SP6-BS73] gi|147928963|gb|EDK79975.1| transcription elongation factor NusA [Streptococcus pneumoniae SP9-BS68] gi|147930204|gb|EDK81189.1| transcription elongation factor NusA [Streptococcus pneumoniae SP23-BS72] gi|168996597|gb|ACA37209.1| transcription termination factor NusA [Streptococcus pneumoniae Hungary19A-6] gi|172043571|gb|EDT51617.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1873-00] gi|182628820|gb|ACB89768.1| transcription elongation factor NusA [Streptococcus pneumoniae CGSP14] gi|183573000|gb|EDT93528.1| transcription termination factor NusA [Streptococcus pneumoniae SP195] gi|183574829|gb|EDT95357.1| transcription termination factor NusA [Streptococcus pneumoniae CDC0288-04] gi|183577711|gb|EDT98239.1| transcription termination factor NusA [Streptococcus pneumoniae MLV-016] gi|220673846|emb|CAR68349.1| putative putative N utilization substance protein A [Streptococcus pneumoniae ATCC 700669] gi|225720770|gb|ACO16624.1| transcription termination factor NusA [Streptococcus pneumoniae 70585] gi|225723031|gb|ACO18884.1| transcription termination factor NusA [Streptococcus pneumoniae JJA] gi|225725477|gb|ACO21329.1| transcription termination factor NusA [Streptococcus pneumoniae P1031] gi|225727542|gb|ACO23393.1| transcription termination factor NusA [Streptococcus pneumoniae Taiwan19F-14] gi|298237942|gb|ADI69073.1| transcription elongation factor NusA [Streptococcus pneumoniae TCH8431/19A] gi|301793757|emb|CBW36144.1| putative putative N utilization substance protein A [Streptococcus pneumoniae INV104] gi|301799610|emb|CBW32165.1| putative putative N utilization substance protein A [Streptococcus pneumoniae OXC141] gi|301801434|emb|CBW34121.1| putative putative N utilization substance protein A [Streptococcus pneumoniae INV200] gi|302597793|gb|EFL64866.1| transcription elongation factor NusA [Streptococcus pneumoniae BS455] gi|302637360|gb|EFL67847.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS292] gi|302638737|gb|EFL69199.1| transcription elongation factor NusA [Streptococcus pneumoniae SP-BS293] gi|302641185|gb|EFL71558.1| transcription elongation factor NusA [Streptococcus pneumoniae BS458] gi|302643401|gb|EFL73677.1| transcription elongation factor NusA [Streptococcus pneumoniae BS457] gi|302646296|gb|EFL76522.1| transcription elongation factor NusA [Streptococcus pneumoniae BS397] gi|306483818|gb|ADM90687.1| transcription termination factor NusA [Streptococcus pneumoniae 670-6B] gi|327390293|gb|EGE88634.1| transcription termination factor NusA [Streptococcus pneumoniae GA04375] gi|332074367|gb|EGI84843.1| transcription termination factor NusA [Streptococcus pneumoniae GA17570] gi|332076389|gb|EGI86852.1| transcription termination factor NusA [Streptococcus pneumoniae GA41301] gi|332202437|gb|EGJ16506.1| transcription termination factor NusA [Streptococcus pneumoniae GA41317] gi|332204573|gb|EGJ18638.1| transcription termination factor NusA [Streptococcus pneumoniae GA47901] Length = 378 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|227537266|ref|ZP_03967315.1| transcription elongation factor NusA [Sphingobacterium spiritivorum ATCC 33300] gi|300772910|ref|ZP_07082779.1| transcription termination factor NusA [Sphingobacterium spiritivorum ATCC 33861] gi|227242870|gb|EEI92885.1| transcription elongation factor NusA [Sphingobacterium spiritivorum ATCC 33300] gi|300759081|gb|EFK55908.1| transcription termination factor NusA [Sphingobacterium spiritivorum ATCC 33861] Length = 412 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 210/332 (63%), Gaps = 5/332 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R +GT ++ V +NP+ GD+ ++R VVE+ E+ Sbjct: 18 KNIDRPTVISVLEEVFRSMIRKRFGTDENVDVIVNPDNGDLEIWRTRVVVEDEFSEDDDL 77 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A D +++G + + FGR A+ +A+Q ++ K+ E E+D + ++KD+ Sbjct: 78 EIELAEAVKHDADLEVGDDYIEQITLESFGRRAILAARQTLVSKILELEKDEVFKKYKDR 137 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 GE++ G V ++ ++V D GN + ++ + E I + + GD +++ ++ V Sbjct: 138 EGELVIGEVYQIWKKEILVLDDDGN-ELILPKTEQIPADYFKKGDSIRAVVHKVDMMNNN 196 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++++SRT P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACV Sbjct: 197 PKIIISRTAPAFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACV 256 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + +DED V + + Sbjct: 257 GMKGSRIHGIVRELRNENIDVINFTTNHSLYITRALSPARISSIKIDEDNKTAAVYLKSD 316 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 Q+SLAIGR G N++LA +LTG+ ID+ E ++ Sbjct: 317 QVSLAIGRGGHNIKLAGKLTGYEIDVYRENDE 348 >gi|149002224|ref|ZP_01827166.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS69] gi|168485664|ref|ZP_02710172.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1087-00] gi|147759539|gb|EDK66530.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS69] gi|183571232|gb|EDT91760.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1087-00] Length = 378 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|307707652|ref|ZP_07644133.1| transcription termination factor NusA [Streptococcus mitis NCTC 12261] gi|307616365|gb|EFN95557.1| transcription termination factor NusA [Streptococcus mitis NCTC 12261] Length = 378 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|306824618|ref|ZP_07457963.1| transcription termination factor NusA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433186|gb|EFM36157.1| transcription termination factor NusA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 378 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|306830060|ref|ZP_07463246.1| transcription termination factor NusA [Streptococcus mitis ATCC 6249] gi|304427773|gb|EFM30867.1| transcription termination factor NusA [Streptococcus mitis ATCC 6249] Length = 378 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|322377700|ref|ZP_08052190.1| transcription termination factor NusA [Streptococcus sp. M334] gi|321281465|gb|EFX58475.1| transcription termination factor NusA [Streptococcus sp. M334] Length = 378 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|260910869|ref|ZP_05917513.1| N utilization substance protein A [Prevotella sp. oral taxon 472 str. F0295] gi|260635020|gb|EEX53066.1| N utilization substance protein A [Prevotella sp. oral taxon 472 str. F0295] Length = 422 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 207/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNPDKGDFEIYRNRMVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ + ++G V++ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QIALTEAQKIEHDYEVGEEVTERVDFAKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++I+G V +V V IVD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLISIKRIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ ++ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENIDVINYTANTKLFIQRALSPAQVSSINIDEENRKAEVFLHPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFRE 351 >gi|293364176|ref|ZP_06610903.1| transcription elongation factor NusA [Streptococcus oralis ATCC 35037] gi|315611732|ref|ZP_07886654.1| transcription termination factor NusA [Streptococcus sanguinis ATCC 49296] gi|291317354|gb|EFE57780.1| transcription elongation factor NusA [Streptococcus oralis ATCC 35037] gi|315316147|gb|EFU64177.1| transcription termination factor NusA [Streptococcus sanguinis ATCC 49296] Length = 378 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|195977581|ref|YP_002122825.1| transcription elongation factor NusA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869110|ref|YP_002745058.1| N utilization substance protein A [Streptococcus equi subsp. zooepidemicus] gi|225869938|ref|YP_002745885.1| N utilization substance protein A [Streptococcus equi subsp. equi 4047] gi|195974286|gb|ACG61812.1| transcription termination protein NusA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699342|emb|CAW92741.1| putative N utilization substance protein A [Streptococcus equi subsp. equi 4047] gi|225702386|emb|CAX00230.1| putative N utilization substance protein A [Streptococcus equi subsp. zooepidemicus] Length = 384 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 207/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIEAVTESLKSAYKRRYGQAESCVIEFNDKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++++R R Sbjct: 64 VVEEVFDSRLEISLNDALAISSAYELGDKIRFEESVSEFGRVAAQSAKQTIMERMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EITFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ D+D+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|217077786|ref|YP_002335504.1| transcription elongation factor NusA [Thermosipho africanus TCF52B] gi|217037641|gb|ACJ76163.1| transcription termination factor NusA [Thermosipho africanus TCF52B] Length = 344 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 213/336 (63%), Gaps = 1/336 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+ LQ + + EK + D ++ V+ ++ A + +G ++ + IN +TG+I ++LL Sbjct: 3 LDFLQALEQLEEEKGVKVDEIIPVIEKALISAYKKDFGGEKNVEIIINRQTGEIEAYQLL 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VE QISL+ A + S IG +V L FGR+A Q+AKQV+IQK+RE E Sbjct: 63 EVVENVEKPNLQISLEEALKINSSAKIGDIVKKRLNIKKFGRIAAQTAKQVLIQKIREIE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 +++Q+ ++ + G+I + V RV + +G + + + E I E ++P +K Y+ Sbjct: 123 KEKQFEKYSELAGKITTAEVVRVTKDWADIRIGKLETRLPKKEWIPGEEIQPASLIKVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV+++++GP++L++R + +F+ L +EVPEI + +V+V + R+PG R K+AV S++ Sbjct: 183 KDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEVVKIVREPGIRTKVAVKSNNP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 +DPVGAC+G G R+ A++ EL EKIDI+ WS D + +AL+PA V +V +LD + Sbjct: 243 KVDPVGACIGEEGIRIAAILKELNGEKIDIIKWSDDPKELIASALQPANVIEVEILDYEN 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VIV QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 303 KASRVIVSPNQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|116627258|ref|YP_819877.1| transcription elongation factor NusA [Streptococcus thermophilus LMD-9] gi|116100535|gb|ABJ65681.1| Transcription elongation factor [Streptococcus thermophilus LMD-9] gi|312277742|gb|ADQ62399.1| Putative transcription factor [Streptococcus thermophilus ND03] Length = 391 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 129/338 (38%), Positives = 201/338 (59%), Gaps = 15/338 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I+++ ++ + +S++ A + YG VE N +TGD +F + EVV+EV + + Sbjct: 11 EKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R+ Y E+K Sbjct: 71 ISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMREITYNEYKQHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y V +G V Sbjct: 131 GEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVYKVENNPKGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 GS ++ VV+ +E ID++ W D A F+ NA+ PA V V+ DE Sbjct: 251 GSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAPAEVDYVLFDED 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 311 DSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 348 >gi|257465970|ref|ZP_05630281.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] gi|315917126|ref|ZP_07913366.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] gi|313691001|gb|EFS27836.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] Length = 353 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/344 (37%), Positives = 209/344 (60%), Gaps = 3/344 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60 Query: 61 SLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + VV E + Y +ISL+ A+ +G V + F R A+Q+ KQ++ Sbjct: 61 KVYEVKTVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R+ E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344 >gi|116515364|ref|YP_815985.1| transcription elongation factor NusA [Streptococcus pneumoniae D39] gi|116075940|gb|ABJ53660.1| transcription termination factor NusA [Streptococcus pneumoniae D39] Length = 378 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|150021290|ref|YP_001306644.1| transcription elongation factor NusA [Thermosipho melanesiensis BI429] gi|149793811|gb|ABR31259.1| NusA antitermination factor [Thermosipho melanesiensis BI429] Length = 344 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/336 (38%), Positives = 215/336 (63%), Gaps = 1/336 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+ LQ + + EK I D ++ ++ ++ A + +G ++ + IN +TG+I L++LL Sbjct: 3 LDFLQALEQLEEEKGIKVDEIIPIIEKALVSAYKKDFGGEKNVEITINRQTGEIELYQLL 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVV++VE T QISL+ A + IG + + FGR+A Q+AKQV+IQ++RE E Sbjct: 63 EVVDKVEKETTQISLEDALKISSNAKIGDTIRKRINVKKFGRIAAQTAKQVLIQRIREIE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 +++Q+ ++ + G+I + V R+ + +G + + + E I E + P +K Y+ Sbjct: 123 KEKQFEKYSELAGKITTAEVIRITKEWADIRIGKLETRLPKKEWIPGETIEPASLIKVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV+++++GP++L++R + +F+ L +EVPEI + +V++ + R+PG R K+AV S++ Sbjct: 183 KDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEIVKIVREPGIRTKVAVKSNNP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 +DPVGAC+G G R+ A++ EL+ EK+DI+ WS D + +AL+PA V +V +LD + Sbjct: 243 KVDPVGACIGEEGVRIAAILRELKGEKLDIIKWSDDPKELIASALQPANVVEVEILDPEN 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +IVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 303 KASRIIVPPTQLSLAIGKGGQNARLAAKLTGWKIDI 338 >gi|288800576|ref|ZP_06406034.1| transcription termination factor NusA [Prevotella sp. oral taxon 299 str. F0039] gi|288332789|gb|EFC71269.1| transcription termination factor NusA [Prevotella sp. oral taxon 299 str. F0039] Length = 421 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 129/328 (39%), Positives = 203/328 (61%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R VV EV + Sbjct: 24 KNIDRATLVSVLEESFRNVLAKLFGSDENFDVIVNPDKGDFEIYRNRVVVANGEVSDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L A +P ++G VS+ + FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EIALNDAIKIEPDYEVGEEVSERVNFAGFGRRAILNLRQTLASKVLELEHDALYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IIS V +V V+ VD N++ + + E I + R G+ V++ I V E P Sbjct: 144 VGQIISAEVYQVWKREVLLVDDENNELKLPKSEQIPSDVYRKGETVRAVIARVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIFLSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++G+R+ +V EL +E ID+V ++ ++ F+ AL PA++ + +DE+ + EV + EQ Sbjct: 264 VKGNRIHGIVRELCNENIDVVNYTSNTKLFIQRALSPAVINSINIDEEAHKAEVFLQPEQ 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRSGLNIKLASMLTEYTIDVFRE 351 >gi|218264757|ref|ZP_03478469.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii DSM 18315] gi|218221806|gb|EEC94456.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii DSM 18315] Length = 424 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 208/327 (63%), Gaps = 5/327 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+ID+D ++SV+ DS + ++GT + V INPE GD ++R VV +E+E+ Sbjct: 21 KNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDFEIWRNRTVVADDELEDENL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++L AR D ++G V+D + DFGR A+ + +Q + K+ E ++D + ++KDK Sbjct: 81 QLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTLASKILELQKDSLFAKYKDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +G II+ V +V +++ D GN + ++ + E I + R G+ V++ + V Sbjct: 141 IGNIIAADVYQVWKKEILLLDDEGN-ELLLPKTEQIPTDFYRKGETVRAIVQRVDNYNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + ++E+ + EV + + Sbjct: 260 GMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRVNEEERKAEVYLHPD 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++SLAIG+ G N++LA LT + ID+ Sbjct: 320 EVSLAIGKGGLNIKLACMLTEYAIDVF 346 >gi|224025208|ref|ZP_03643574.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM 18228] gi|224018444|gb|EEF76442.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 129/333 (38%), Positives = 209/333 (62%), Gaps = 5/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTLVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNS 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S +IG V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSQARQIDASYEIGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG +IS V ++ +++ D GN + ++ + E I + R G+ ++ + V Sbjct: 141 VGTVISAEVYQIWKKEILLLDDEGN-ELLLPKTEQIPGDFYRKGETARAVVARVDNPGNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPMFLQRLFEQEVPEIADGLITIRRIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ +V+ ED + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIVMHEDEKKAEVYLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 ++SLAIG+ G N++LAS LT +TID+ E ++S Sbjct: 320 EVSLAIGKGGMNIKLASMLTEYTIDVYRELDES 352 >gi|256379832|ref|YP_003103492.1| transcription elongation factor NusA [Actinosynnema mirum DSM 43827] gi|255924135|gb|ACU39646.1| NusA antitermination factor [Actinosynnema mirum DSM 43827] Length = 337 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/339 (41%), Positives = 201/339 (59%), Gaps = 31/339 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I D VL + ++ A + G RVEI+ ++G + + Sbjct: 10 AIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVL----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 A+D P GVV++ P FGR+A +A+QVI+Q++R+AE +R + Sbjct: 59 ---------AQDLGPD----GVVTEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFG 105 Query: 133 EFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF K GEII G V+R N V+V +G+++GV+ E + E + G R+K Y+ Sbjct: 106 EFSAKEGEIIGGVVQRDARANARGMVVVQVGDTEGVLPPAEQVPGEEYKHGARIKCYVVG 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV +S + Sbjct: 166 VSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSVPGV 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G+RV+ V++EL EKIDI+ S D ATFV NAL PA V V VLDE Sbjct: 226 NAKGACIGPMGARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDERAKT 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 286 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAE 324 >gi|212550409|ref|YP_002308726.1| transcription elongation factor NusA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548647|dbj|BAG83315.1| transcription elongation factor NusA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 417 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 207/332 (62%), Gaps = 5/332 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ ++ + A ++G+ + + +NP+ GD ++R EVV +++EN Sbjct: 21 KNIDRTTLISVLEETFRNAINKMFGSDKNYNIIVNPDKGDFEIWRNREVVPDDKLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L AR DP + G +SD + FGR V + +Q++ K+ E + + Y ++KDK Sbjct: 81 QITLSEARKIDPDYESGEEISDAVNFSSFGRRTVLNLRQILTSKILELQNNSLYNKYKDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +G I++G V ++ +++ D GN + ++ + E I + R + ++ + V Sbjct: 141 IGHIVTGEVYQIWKKEILLLDDEGN-ELILPKSEQIPNDFFRKNESCRAVVLRVDNNYSN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT FM +LF +EVPEI +G++ +K ++R PG RAK+AV S + IDP+G CV Sbjct: 200 PKIILSRTSNSFMQQLFELEVPEIQDGLITIKHIARIPGERAKIAVESYNERIDPIGTCV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+G R+ +V ELR+E IDI+ ++ + + F+ AL PA ++ + + E + EV + E Sbjct: 260 GMKGMRIHGIVRELRNENIDIINYTSNISLFIQRALSPAKISSIKIHEKEKKAEVFLRPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 ++SLAIG+ G N++LAS LTG+TID+ E E+ Sbjct: 320 EVSLAIGKSGLNIKLASILTGYTIDVFREGEN 351 >gi|256827233|ref|YP_003151192.1| transcription termination factor NusA [Cryptobacterium curtum DSM 15641] gi|256583376|gb|ACU94510.1| transcription termination factor NusA [Cryptobacterium curtum DSM 15641] Length = 402 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/360 (39%), Positives = 213/360 (59%), Gaps = 46/360 (12%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL- 66 EL++ A+A+E+ ID ++ + S+ K+ +++ D RV I+ TG I ++ L+ Sbjct: 5 ELIEALHALAHERKIDEFYLIERLEASLAKSYQNILDLEWDARVTIDRNTGKIYVYELVP 64 Query: 67 --EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E E YT +RD + P D R+A Q+AK VI VRE Sbjct: 65 QGEPDPETGEYTD------FEERD------------VTPDDVSRIAAQNAKGVINAIVRE 106 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-------------IRRDETI 171 A R Y EF +VG++++GTV + I+ + DGV R+E Sbjct: 107 AGRQSIYEEFSQRVGDLVTGTVLQGTPDFTIIKI--RDGVEAELPHYDQKRFPDERNERP 164 Query: 172 SRENLRPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + E R R+K+ I +VR EQ P +++SRTHP + +LF +EVPEIY+ Sbjct: 165 ANERYRHNQRLKTLIIEVRNPNSEESRQRGEQARPSIVVSRTHPDLIRRLFEIEVPEIYD 224 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V++K+++R+PG+R+K+AV S ++ +DPVGACVG +GSRV+ VV ELR+E++D++ WS Sbjct: 225 GVVEIKSIAREPGARSKVAVVSHENHLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSD 284 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+AT+V NAL PA V+ V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 285 DAATYVRNALSPARVSHVDIDEETHYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDI 344 >gi|149197530|ref|ZP_01874581.1| transcription elongation factor NusA [Lentisphaera araneosa HTCC2155] gi|149139548|gb|EDM27950.1| transcription elongation factor NusA [Lentisphaera araneosa HTCC2155] Length = 413 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/413 (33%), Positives = 236/413 (57%), Gaps = 5/413 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + + EK+ID+ ++ ++ D++ G S+I+VEIN TGD+++ + Sbjct: 4 ELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIADVV 63 Query: 68 VVEEVENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + EEV + +I L A ++ + IG V L R+A Q+ +Q I+Q++R E Sbjct: 64 IAEEVFDKRHEIDLASAQKEYGDEVAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRLRTFE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++R E+ D VGE+ISGTV+ E +IVD G + G + + + + RE GD + + + Sbjct: 124 KERVVEEYSDMVGELISGTVRHFEKNELIVDFGRAQGGLGKMDRVPRERFDNGDHITALL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++ + GP ++LSRT + + KLF EV EI NG+V++KAV+R G R K+AV S Sbjct: 184 KEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAVAS--D 241 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 S+DPVGAC+G+RGSRV+ + EL +EK+DI+ +S D +V A +P + +V +D+D Sbjct: 242 SLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEIDQDGR 301 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS-INRQKDFNERTQFFMQA 365 I+++V +E +GR G+N+RL +L W I++ D+ I + E Q M+ Sbjct: 302 LIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQTMMKL 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 N+DE A +++ G+ +E ++ ++ G + + A EI A+ L+ Sbjct: 362 PNMDEGKARMMIDGGYLSLEGVSEASTDDLVEA-GIEADHATEIIEYAKSRLQ 413 >gi|288925326|ref|ZP_06419260.1| transcription termination factor NusA [Prevotella buccae D17] gi|288337797|gb|EFC76149.1| transcription termination factor NusA [Prevotella buccae D17] Length = 421 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 206/328 (62%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 EICLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++ I V E P Sbjct: 144 VGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGMNIKLASMLTEYTIDVFRE 351 >gi|319744370|gb|EFV96730.1| transcription termination factor NusA [Streptococcus agalactiae ATCC 13813] Length = 386 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + E Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVDEVFDSRLEISLKNALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 127 EVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S+ Sbjct: 187 KVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V++ +E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 360 >gi|327403853|ref|YP_004344691.1| NusA antitermination factor [Fluviicola taffensis DSM 16823] gi|327319361|gb|AEA43853.1| NusA antitermination factor [Fluviicola taffensis DSM 16823] Length = 411 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 140/408 (34%), Positives = 234/408 (57%), Gaps = 10/408 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ KSID+ + V+ D + + + T I V +N + GD+ +F Sbjct: 2 NSLELVESFSEFKELKSIDKQTMQHVLEDVFRAMLKKKFNTDEHIDVIVNIDKGDVQIFV 61 Query: 65 LLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 E+V EVE+ +I+ A +P +IG VS+ DFGR + S +Q +I ++ Sbjct: 62 NKEIVADGEVEDQNTEIAYSDAIKIEPDFEIGEEVSEEFRFNDFGRRNILSLRQNLISRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E E+D Y ++K+++GEII+G V +V ++V D N++ ++ + E I + + G+ Sbjct: 122 LELEKDHLYKKYKERIGEIITGEVYQVWKKEIMVLDDENNELILPKSEQIPSDYFKKGES 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V P ++LSR P+F+ +LF +EVPE+++G++ +K + R+PG RAK+AV Sbjct: 182 IRAVVSKVDMRNSSPVIILSRIAPEFLERLFELEVPEVFDGLITIKRIVREPGERAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + F+ AL PA +T + + Sbjct: 242 ESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINFTSNPKLFIQRALSPAKITNIEI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ R V + +Q+SLAIG+ G N+RLA +LTG+ ID+ + E S N D E Sbjct: 302 DEEQKRASVFLKPDQVSLAIGKGGYNIRLAGKLTGFEIDVFRDGE-SDNEDVDLEEF--- 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 A +D I L A G + + + ++++ +EET E+ Sbjct: 358 ---ADEIDSWILDELKAVGCDTAKSVLELTVADLVQRTDLEEETVQEV 402 >gi|189465081|ref|ZP_03013866.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM 17393] gi|189437355|gb|EDV06340.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM 17393] Length = 440 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 210/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ D S ++G V+D + +FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGNIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEERKAEVFLRPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|309799813|ref|ZP_07694020.1| transcription termination factor NusA [Streptococcus infantis SK1302] gi|308116529|gb|EFO53998.1| transcription termination factor NusA [Streptococcus infantis SK1302] Length = 378 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|310778372|ref|YP_003966705.1| transcription termination factor NusA [Ilyobacter polytropus DSM 2926] gi|309747695|gb|ADO82357.1| transcription termination factor NusA [Ilyobacter polytropus DSM 2926] Length = 356 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 134/331 (40%), Positives = 203/331 (61%), Gaps = 4/331 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLEVVEEVENY-- 75 EK I ++ ++ + ++ A + YG S I VEIN E+GD+ ++ + VVE + Y Sbjct: 19 EKGISKESLIETVEQALLAAYKKHYGEEDSSIEVEINRESGDVKVYEIKTVVEAEDLYDS 78 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 C+I L+ A +G V+ + +F R A+Q+ KQ++IQKVREAER + +FK Sbjct: 79 ACEIILEDALLEKKRAKVGDVLKIEVNCEEFRRNAIQNGKQIVIQKVREAERQFVFDKFK 138 Query: 136 DKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 + +II+G ++R++ N+ ++ + ++ E + R GDR+K Y+ +V + R Sbjct: 139 SREKDIINGIIRRIDDRRNIFIEFDGIEAMLPIVEQSPSDVYRVGDRLKVYVVEVEKTSR 198 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P++L+SR H + KLF +E+PEI +G++++KAV+R+ GSRAK+AV+S + ID VGAC Sbjct: 199 FPKILISRKHEGLLKKLFELEIPEIEDGLIEIKAVAREAGSRAKVAVYSENKEIDTVGAC 258 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 +G +G R++ VV EL EKIDIV W FV AL PA V V + ED VIV Sbjct: 259 IGQKGLRIKNVVNELNGEKIDIVEWLDSQEEFVSAALSPAKVMSVEVLEDQVTARVIVDT 318 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 QLSLAIG+ GQN RLA++LTG +DI T E Sbjct: 319 SQLSLAIGKNGQNARLAAKLTGMRVDIKTPE 349 >gi|281422606|ref|ZP_06253605.1| transcription termination factor NusA [Prevotella copri DSM 18205] gi|281403276|gb|EFB33956.1| transcription termination factor NusA [Prevotella copri DSM 18205] Length = 420 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 208/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 23 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 82 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 83 EITLSEARKIEPDYEVGEDVSETVDFNKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 142 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V +V V IVD N++ ++ + E I + R G+ V++ I V E P Sbjct: 143 VGQVISGEVYQVWKREVLIVDDENNELMLPKTEQIPGDTYRKGETVRAVILRVDNENNNP 202 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV + D IDPVGACVG Sbjct: 203 KIILSRTAPIFLQRLLEAEVPEIADGLIAIRRIARLPGERAKIAVETFDERIDPVGACVG 262 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E +D++ +S ++ F+ AL PA V+ + +D++ + EV + E+ Sbjct: 263 VKGSRVHGIVRELCNENLDVINYSSNTKLFIQRALAPAKVSSINVDDENKKAEVYLQPEE 322 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 323 VSLAIGRGGMNIKLASMLTEYTIDVFRE 350 >gi|320537771|ref|ZP_08037693.1| transcription termination factor NusA [Treponema phagedenis F0421] gi|320145361|gb|EFW37055.1| transcription termination factor NusA [Treponema phagedenis F0421] Length = 488 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 258/465 (55%), Gaps = 22/465 (4%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A EK +D D+ ++ +++ A ++ + T + V +S++ +VV+EV++ Sbjct: 13 AQEKEMDEDLAFKIVEQTLKAAYKTTFKTDENAVVTFG--DNHVSIYSRKKVVDEVDDDV 70 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L+ A+ + ++G + L P +F R +VQ+A Q I Q RE ++D Y E+K Sbjct: 71 TEIDLEDAKKLTENAELGDELLVELDPENFKRGSVQAAVQRIHQLSRELQKDSLYAEYKS 130 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG- 195 K GEII G +R+ G++ VDLG +GV+ R I E DR+K+ I +V++ Q Sbjct: 131 KEGEIIIGYFQRMREGSIYVDLGKVEGVLPRKYQIPGEEFHQNDRIKALIREVKKHQSNL 190 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 Q++LSRT F+ L E+PEIY+GIV++ + R+PG R K+AVF+ IDPVGACV Sbjct: 191 VQLILSRTDADFVRGLLSSEIPEIYDGIVEIHKIVREPGYRTKVAVFTRREDIDPVGACV 250 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVIVPK 314 G RG+R+Q ++ EL DEKID+V +S D A F+ NAL PA ++ ++LDE+ +V Sbjct: 251 GQRGARIQTIIKELDDEKIDVVEYSDDPAEFIRNALSPAEVLNVIILDEEKRSALAVVSD 310 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--------DSINRQK----DFNERTQFF 362 QLS+AIG++G NVRLA++L W+ID+ TE++ DS + D E ++ Sbjct: 311 SQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFAEMEVVTDSRKAAEELFSDDEEVAEYD 370 Query: 363 MQA--INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 +Q N+D I +L G ++E L + +E+ ++EG E E+ +E E Sbjct: 371 IQEELPNLDPAIITILHQNGIKEIETLVNLSENEVRALEGMTSEYVEEL---FKEINENF 427 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 +I +++I E + +P + + E G + D+ C Sbjct: 428 EIVQEERIDEPEQTNTEEQLPEYEEQ-SFECPECGARITTDMTEC 471 >gi|322387178|ref|ZP_08060788.1| transcription elongation factor NusA [Streptococcus infantis ATCC 700779] gi|321141707|gb|EFX37202.1| transcription elongation factor NusA [Streptococcus infantis ATCC 700779] Length = 378 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|224536664|ref|ZP_03677203.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus DSM 14838] gi|224521755|gb|EEF90860.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus DSM 14838] Length = 446 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 210/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++EN Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLENPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ D S ++G V+D + +FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGNIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEERKAEVFLRPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|255010119|ref|ZP_05282245.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] gi|313147917|ref|ZP_07810110.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] gi|313136684|gb|EFR54044.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] Length = 420 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 209/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLTEAQQIDASYEVGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEERKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|282850815|ref|ZP_06260189.1| transcription termination factor NusA [Lactobacillus gasseri 224-1] gi|282557767|gb|EFB63355.1| transcription termination factor NusA [Lactobacillus gasseri 224-1] Length = 406 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/342 (38%), Positives = 213/342 (62%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + +Y ++KD EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 124 EHIISEYSQYKD---EIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+ Sbjct: 181 LVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D ID VG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D Sbjct: 241 DPDIDSVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D VIVP QLSLAIG+RGQNVRLA++L G+ IDI E Sbjct: 301 DDDKNALVIVPDYQLSLAIGKRGQNVRLAARLAGYKIDIKPE 342 >gi|322391412|ref|ZP_08064882.1| transcription elongation factor NusA [Streptococcus peroris ATCC 700780] gi|321145838|gb|EFX41229.1| transcription elongation factor NusA [Streptococcus peroris ATCC 700780] Length = 378 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 211/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|53711553|ref|YP_097545.1| transcription elongation factor NusA [Bacteroides fragilis YCH46] gi|60679812|ref|YP_209956.1| transcription elongation factor NusA [Bacteroides fragilis NCTC 9343] gi|253564386|ref|ZP_04841843.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5] gi|265764945|ref|ZP_06093220.1| transcription termination factor NusA [Bacteroides sp. 2_1_16] gi|52214418|dbj|BAD47011.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] gi|60491246|emb|CAH05994.1| putative N utilization substance protein A [Bacteroides fragilis NCTC 9343] gi|251948162|gb|EES88444.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5] gi|263254329|gb|EEZ25763.1| transcription termination factor NusA [Bacteroides sp. 2_1_16] gi|301161335|emb|CBW20875.1| putative N utilization substance protein A [Bacteroides fragilis 638R] Length = 420 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 209/329 (63%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEERKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LAS LT +TID+ E Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|315222140|ref|ZP_07864049.1| transcription termination factor NusA [Streptococcus anginosus F0211] gi|315188766|gb|EFU22472.1| transcription termination factor NusA [Streptococcus anginosus F0211] Length = 397 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 AITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDSEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|307702469|ref|ZP_07639424.1| transcription elongation protein nusA [Streptococcus oralis ATCC 35037] gi|307623963|gb|EFO02945.1| transcription elongation protein nusA [Streptococcus oralis ATCC 35037] Length = 374 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EVV+EV + + Sbjct: 11 DKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 71 ISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V Sbjct: 131 QEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE Sbjct: 251 GANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEN 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|307705617|ref|ZP_07642469.1| transcription elongation protein nusA [Streptococcus mitis SK597] gi|307620894|gb|EFN99978.1| transcription elongation protein nusA [Streptococcus mitis SK597] Length = 374 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EVV+EV + + Sbjct: 11 DKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 71 ISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V Sbjct: 131 QEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE Sbjct: 251 GANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEN 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|307710806|ref|ZP_07647234.1| transcription elongation protein nusA [Streptococcus mitis SK321] gi|307617412|gb|EFN96584.1| transcription elongation protein nusA [Streptococcus mitis SK321] Length = 374 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EVV+EV + + Sbjct: 11 DKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 71 ISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V Sbjct: 131 QEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE Sbjct: 251 GANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEN 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|183603429|ref|ZP_02716853.2| transcription termination factor NusA [Streptococcus pneumoniae CDC3059-06] gi|307067174|ref|YP_003876140.1| transcription elongation factor [Streptococcus pneumoniae AP200] gi|183576810|gb|EDT97338.1| transcription termination factor NusA [Streptococcus pneumoniae CDC3059-06] gi|306408711|gb|ADM84138.1| Transcription elongation factor [Streptococcus pneumoniae AP200] gi|332076985|gb|EGI87447.1| transcription termination factor NusA [Streptococcus pneumoniae GA17545] Length = 374 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EVV+EV + + Sbjct: 11 DKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 71 ISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V Sbjct: 131 QEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE Sbjct: 251 GANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEN 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|307709807|ref|ZP_07646258.1| transcription elongation protein nusA [Streptococcus mitis SK564] gi|307619509|gb|EFN98634.1| transcription elongation protein nusA [Streptococcus mitis SK564] Length = 374 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EVV+EV + + Sbjct: 11 DKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 71 ISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V Sbjct: 131 QEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE Sbjct: 251 GANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEN 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|331265777|ref|YP_004325407.1| transcription termination-antitermination factor [Streptococcus oralis Uo5] gi|326682449|emb|CBZ00066.1| transcription termination-antitermination factor [Streptococcus oralis Uo5] Length = 374 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EVV+EV + + Sbjct: 11 DKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 71 ISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V Sbjct: 131 QEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 191 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE- 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE Sbjct: 251 GANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEN 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|258647228|ref|ZP_05734697.1| transcription termination factor NusA [Prevotella tannerae ATCC 51259] gi|260852981|gb|EEX72850.1| transcription termination factor NusA [Prevotella tannerae ATCC 51259] Length = 419 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 226/372 (60%), Gaps = 11/372 (2%) Query: 6 RLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E++ + D A K+IDR ++SV+ +S + L+G+ + V +NP+ GD + Sbjct: 5 KAEVISLTDTFAEFKENKNIDRTTLVSVLEESFRSVITKLFGSDENFDVIVNPDKGDCEI 64 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV + VE++ QISL AR+ D + G VS+P+ FGR A+ + +Q + Sbjct: 65 YRNRVVVADNAVEDHKSQISLTEAREIDSDYEEGEEVSEPINFAKFGRRAILTLRQTLAS 124 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+ E + D + ++KD+VGEII+ V + + +++D ++ + +++ I R+ G Sbjct: 125 KLLELDHDALFNKYKDRVGEIIAAEVYQTWKQETLLMDDEGNELYLPKNQQIPRDFFHKG 184 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D V++ I V P++ LSRT P+F+ +L E+PEI +G++ +K ++R PG RAK+ Sbjct: 185 DNVRAVIDRVDNLNGTPKIFLSRTSPEFLRRLLEQEIPEIGDGLISLKRIARIPGERAKI 244 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + A F+ AL PA V+ + Sbjct: 245 AVESYDDRIDPVGACVGVKGSRIHGIVRELHNENIDVINYTSNPALFIQRALNPAQVSSI 304 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-----EEDSINRQKD 354 LDE+ + +V + E++SLAIG+ GQN++LAS LT +TID+ E +ED I + Sbjct: 305 QLDEENRKAQVYLRPEEVSLAIGKGGQNIKLASMLTEYTIDVFREVEGDDQEDDIFLDEF 364 Query: 355 FNERTQFFMQAI 366 +E Q+ + AI Sbjct: 365 ADEIDQWVIDAI 376 >gi|317504200|ref|ZP_07962194.1| transcription elongation factor NusA [Prevotella salivae DSM 15606] gi|315664689|gb|EFV04362.1| transcription elongation factor NusA [Prevotella salivae DSM 15606] Length = 421 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 207/328 (63%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++L AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QVALTEARKIEPDYEVGEEVSEQVNFAKFGRRAILNLRQTLASKILELEHDTLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V ++ V +VD N++ ++ + E I + R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPLFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +D++ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENLDVVNYTSNINLFIQRALSPARVSSINIDQENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGLNIKLASMLTEFTIDVFRE 351 >gi|319939747|ref|ZP_08014104.1| transcription termination factor NusA [Streptococcus anginosus 1_2_62CV] gi|319811085|gb|EFW07396.1| transcription termination factor NusA [Streptococcus anginosus 1_2_62CV] Length = 397 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 AITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 ID +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 IDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ D +D V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDSQDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|256832250|ref|YP_003160977.1| NusA antitermination factor [Jonesia denitrificans DSM 20603] gi|256685781|gb|ACV08674.1| NusA antitermination factor [Jonesia denitrificans DSM 20603] Length = 354 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 136/342 (39%), Positives = 207/342 (60%), Gaps = 30/342 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 E+ I DV+L + ++ A + ++ RVEI+ +TG + ++ EE+E Sbjct: 14 EREISLDVLLEAIEQALALAYQRTPDSLRHARVEIDRKTGQVVVW----AREEIE----- 64 Query: 79 ISLKVARDRDPS-IDIGGVVSDPL---------PPMDFGRVAVQSAKQVIIQKVREAERD 128 R+P+ +D G P+ P DFG VA +A+QVI Q++R+ E D Sbjct: 65 --------REPARVDDEGAYVPPVRELGDEFDHTPKDFGHVATATARQVIFQRMRDVEDD 116 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +FKDK G ++SG +++ + + VDLGN + V+ E + E+ R G RV++Y+ Sbjct: 117 QVLGQFKDKEGHVVSGIIQQAAHPRAVNVDLGNGVEAVLPEHEQVPGEDYRHGARVRAYV 176 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V R+ +GP + LSRTHP + +LF MEVPE+ +G V++ A++R+ G R K+AV S+ Sbjct: 177 VEVARKAKGPSITLSRTHPNLVRRLFEMEVPEVADGAVEIIALAREAGHRTKMAVTSTIP 236 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 ++P GAC+G G RV+AV+ EL EKIDIV ++ D A F+ +AL PA V+ V +LDE Sbjct: 237 GLNPKGACIGPMGQRVRAVMAELGGEKIDIVDYTEDPAQFIASALSPATVSSVSILDERA 296 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ +D Sbjct: 297 RMARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIRSDADD 338 >gi|25010487|ref|NP_734882.1| transcription elongation factor NusA [Streptococcus agalactiae NEM316] gi|76788260|ref|YP_329098.1| transcription elongation factor NusA [Streptococcus agalactiae A909] gi|161485616|ref|NP_687412.2| transcription elongation factor NusA [Streptococcus agalactiae 2603V/R] gi|23094840|emb|CAD46058.1| Unknown [Streptococcus agalactiae NEM316] gi|76563317|gb|ABA45901.1| transcription termination factor NusA [Streptococcus agalactiae A909] Length = 383 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 208/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 124 EVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S+ Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|237716685|ref|ZP_04547166.1| transcription elongation factor NusA [Bacteroides sp. D1] gi|262405461|ref|ZP_06082011.1| transcription termination factor NusA [Bacteroides sp. 2_1_22] gi|293370440|ref|ZP_06616993.1| transcription termination factor NusA [Bacteroides ovatus SD CMC 3f] gi|294646240|ref|ZP_06723894.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a] gi|294809092|ref|ZP_06767810.1| transcription termination factor NusA [Bacteroides xylanisolvens SD CC 1b] gi|229442668|gb|EEO48459.1| transcription elongation factor NusA [Bacteroides sp. D1] gi|262356336|gb|EEZ05426.1| transcription termination factor NusA [Bacteroides sp. 2_1_22] gi|292634432|gb|EFF52968.1| transcription termination factor NusA [Bacteroides ovatus SD CMC 3f] gi|292638458|gb|EFF56822.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a] gi|294443646|gb|EFG12395.1| transcription termination factor NusA [Bacteroides xylanisolvens SD CC 1b] Length = 424 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 212/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S + G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++S+ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDESV 353 >gi|228476580|ref|ZP_04061262.1| transcription termination factor NusA [Streptococcus salivarius SK126] gi|228251775|gb|EEK10840.1| transcription termination factor NusA [Streptococcus salivarius SK126] Length = 399 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD ++ + E Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|15902522|ref|NP_358072.1| transcription elongation factor NusA [Streptococcus pneumoniae R6] gi|15458048|gb|AAK99282.1| Transcription termination [Streptococcus pneumoniae R6] Length = 378 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 210/354 (59%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEAFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|281424957|ref|ZP_06255870.1| transcription termination factor NusA [Prevotella oris F0302] gi|281400801|gb|EFB31632.1| transcription termination factor NusA [Prevotella oris F0302] Length = 421 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 206/328 (62%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A +P +IG VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQTLASKILELEHDTLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I+SG V ++ V +VD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIVSGEVYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARVSSINIDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFRE 351 >gi|167751796|ref|ZP_02423923.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216] gi|167660037|gb|EDS04167.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216] Length = 410 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 130/334 (38%), Positives = 206/334 (61%), Gaps = 7/334 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID+ ++ V+ D + A + + T + V INPE GD+ ++R VVE+ VEN Sbjct: 17 KNIDKATMIGVLEDVFRHALQKQFETDENFDVIINPEKGDLEIWRNRTVVEDGAVENPNM 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI++ + DP+ ++G DP+ FGR AV S +Q + ++ + E+ Y ++ +K Sbjct: 77 QIAVSEVKAIDPTYEVGDEYVDPIKLESFGRRAVLSLRQNLASRILDLEKANLYEKYSEK 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGEII+G V +V V++ D GN + ++ + E I + R GD +K+ + V Sbjct: 137 VGEIITGEVYQVWKKEVLILDDEGN-ELILPKTEQIPNDYYRKGDTIKAIVKSVEMNNNQ 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+AV S D IDPVGACV Sbjct: 196 PRIILSRTANQFLERLFEQEVPEIFDGLITLKKIVRIPGERAKVAVESYDERIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ ++V ELR+E ID+V ++ + + AL PA ++ + +DE+ V + + Sbjct: 256 GMKGSRIYSIVKELRNENIDVVNYTTNPQLMIQRALNPAKISSITIDEEKKTASVYLKPD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII--TEEED 347 Q+SLAIG+ G N+RL+ LTG+ ID+ EEED Sbjct: 316 QVSLAIGKGGLNIRLSKMLTGYDIDVYREIEEED 349 >gi|298480547|ref|ZP_06998744.1| transcription termination factor NusA [Bacteroides sp. D22] gi|295086245|emb|CBK67768.1| transcription termination factor NusA [Bacteroides xylanisolvens XB1A] gi|298273368|gb|EFI14932.1| transcription termination factor NusA [Bacteroides sp. D22] Length = 426 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 212/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S + G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV 353 >gi|317133695|ref|YP_004093009.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315471674|gb|ADU28278.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 370 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/356 (39%), Positives = 211/356 (59%), Gaps = 11/356 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL- 66 E +A+ EK I + +A++I A + Y T + VE++P+ +FR+ Sbjct: 4 EFFDALEALEKEKGIPEGHLAEKIANAITIAVKHNYKTGDNTIVELDPQK---RIFRVAL 60 Query: 67 --EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V E VEN +I L A+ DP + IG V L FGR+A Q+AK VI Q +RE Sbjct: 61 RKTVSETVENPQMEIYLDEAKAIDPRVTIGDTVDIELDTRKFGRIAAQTAKHVIRQGIRE 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ER+ E + E+++ + R++ G+ +D+G ++ V+ +E I E LR G V Sbjct: 121 VEREIIKDESMSRQHEMVTAGISRIDSVTGSAYLDIGRAEAVMPANEQIPGEQLREGQMV 180 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ +V+ ++G + L+SRTHP + +LF +EVPEIY+G V++ ++R+PGSR K+AV Sbjct: 181 KVYVVEVKNGEKGVRTLVSRTHPGMIRRLFELEVPEIYDGTVEIMGIAREPGSRTKVAVA 240 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + +D +G+C+G +G RV +V EL EKID++ ++ D ++ AL PA V +V D Sbjct: 241 SKNEDVDAIGSCIGPKGGRVGNIVEELHGEKIDLIPYAQDIGQYIAAALAPAAVVEVTTD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE---EEDSINRQKDF 355 E R VIVP +QLSLAIG RGQNVRLA++LTGW IDI E +ED RQ + Sbjct: 301 EKERRARVIVPDDQLSLAIGNRGQNVRLAAKLTGWRIDIRPESGADEDPQPRQTNM 356 >gi|160883929|ref|ZP_02064932.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483] gi|237720417|ref|ZP_04550898.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4] gi|299147096|ref|ZP_07040163.1| transcription termination factor NusA [Bacteroides sp. 3_1_23] gi|156110659|gb|EDO12404.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483] gi|229450168|gb|EEO55959.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4] gi|298514981|gb|EFI38863.1| transcription termination factor NusA [Bacteroides sp. 3_1_23] Length = 431 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 212/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S + G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV 353 >gi|299142250|ref|ZP_07035383.1| transcription termination factor NusA [Prevotella oris C735] gi|298576339|gb|EFI48212.1| transcription termination factor NusA [Prevotella oris C735] Length = 421 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 127/328 (38%), Positives = 206/328 (62%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV EVE+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A +P +IG VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQTLASKILELEHDTLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I+SG + ++ V +VD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIVSGEIYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARVSSINIDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIGR G N++LAS LT +TID+ E Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFRE 351 >gi|282879392|ref|ZP_06288135.1| transcription termination factor NusA [Prevotella buccalis ATCC 35310] gi|281298505|gb|EFA90931.1| transcription termination factor NusA [Prevotella buccalis ATCC 35310] Length = 421 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 131/332 (39%), Positives = 208/332 (62%), Gaps = 3/332 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV EV + Sbjct: 24 KNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRIVVPDGEVADENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISLK AR+ + + G VS+ + FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EISLKEAREIEDDYEEGEEVSEQIDFAKFGRRAILNLRQTLKSKVLELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V ++ V+ VD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQVISGEVYQIWKREVLLVDDENNELILPKSEQIPADQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPVFLERLLEAEVPEINDGLISIKKIARMPGERAKVAVESYDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA ++ + LDE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPARISSINLDEENRKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +SLAIGR G N++LAS LT +TID+ E D+ Sbjct: 324 VSLAIGRGGLNIKLASMLTEFTIDVYREVSDA 355 >gi|260172453|ref|ZP_05758865.1| transcription elongation factor NusA [Bacteroides sp. D2] gi|315920747|ref|ZP_07916987.1| transcription elongation factor NusA [Bacteroides sp. D2] gi|313694622|gb|EFS31457.1| transcription elongation factor NusA [Bacteroides sp. D2] Length = 427 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 212/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S + G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV 353 >gi|119953577|ref|YP_945787.1| transcription elongation factor NusA [Borrelia turicatae 91E135] gi|119862348|gb|AAX18116.1| N utilization substance protein A [Borrelia turicatae 91E135] Length = 495 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 124/336 (36%), Positives = 208/336 (61%), Gaps = 7/336 (2%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +SI A + +GT + ++ + +TGD+ ++ ++VE Sbjct: 21 QMIANIANERGMSIDAIRKTVRESIMIAYKKYFGTSENALIKFDEDTGDLIVYSKKKIVE 80 Query: 71 EVENYTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 EV++ L++ +D ++ G + P F R+++Q AKQ ++ E + Sbjct: 81 EVQDDI----LEILKDDSQEFEVMEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDN 136 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y Sbjct: 137 ELYLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYGLNDKVRVLVYS 196 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V++ + G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S I Sbjct: 197 VKKGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGLIKIHKIVRDPGYRTKVAVYSEKEEI 256 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DPVG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + V ++DED+ + Sbjct: 257 DPVGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIRDALTPAKIDNVYIVDEDLHK 316 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+V EQLSLAIG+ GQNVRLA++L W ID+ T Sbjct: 317 ALVVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKT 352 >gi|150024572|ref|YP_001295398.1| transcription elongation factor NusA [Flavobacterium psychrophilum JIP02/86] gi|149771113|emb|CAL42580.1| Transcription elongation protein NusA [Flavobacterium psychrophilum JIP02/86] Length = 413 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 208/329 (63%), Gaps = 3/329 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF--RLLEVVEEVENYT 76 +KSIDR +++++ D + A + YG+ + + INP+ GD+ ++ R++ ++++ Sbjct: 16 DKSIDRPTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIWQRRVIVADDDLDLDH 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I+L AR +P +IG VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 LEITLTDARKIEPDFEIGEEVSEEVKLIDLGRRAILALRQNLISKIHEHDNTNLYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +G+I +G V V VI VD ++ ++ +++ I + R GD V+ I V + Sbjct: 136 LIGDIYTGEVHHVRPRVVILVDDEGNEIILPKEKQIPSDFFRKGDNVRGIIESVELKGNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGACV Sbjct: 196 PQIIMSRTSEKFLEKLFEQEIPEVFDGLIMVKNVVRIPGEKAKVAVDSYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ + ++E+ R EV + E Sbjct: 256 GMKGSRIHGIVRELGNENIDVINYTTNTQLYITRALSPAKVSSIKINEETKRAEVFLKLE 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++S AIGR G N++LA QLTG+ +D+I E Sbjct: 316 EVSKAIGRGGHNIKLAGQLTGYELDVIRE 344 >gi|269127538|ref|YP_003300908.1| NusA antitermination factor [Thermomonospora curvata DSM 43183] gi|268312496|gb|ACY98870.1| NusA antitermination factor [Thermomonospora curvata DSM 43183] Length = 351 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 137/330 (41%), Positives = 199/330 (60%), Gaps = 24/330 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I ++V + D++ A G RVE++ +TG ++++ E ++ Sbjct: 10 EKDISLELVAQAIEDALLIAYHRTEGAAPRARVELDRKTGHVTVW-----AAETDDEG-- 62 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 V R+ D + P DF R+A +AKQVI+QK+R+AE + + E+ + Sbjct: 63 ---NVLREYDDT------------PEDFSRIAATTAKQVILQKLRDAEDEVTFGEYAGRE 107 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I+SG +++ + NV+VDLG + ++ E + E+ GDR+++Y+ VR+ RGP Sbjct: 108 GDIVSGVIQQGKDPRNVLVDLGRIEAILPPSEQVPGESYEHGDRIRAYVVQVRKGHRGPS 167 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S ++ GAC+G Sbjct: 168 VQLSRTHPNLVRKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRKPGVNAKGACIGP 227 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 GSRV+ V+ ELR EKIDIV WS D A FV NAL PA V+ V V+DE VIVP Q Sbjct: 228 MGSRVRNVMHELRGEKIDIVDWSEDPAEFVGNALSPARVSSVQVIDEAARTARVIVPDYQ 287 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 288 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 317 >gi|284036133|ref|YP_003386063.1| NusA antitermination factor [Spirosoma linguale DSM 74] gi|283815426|gb|ADB37264.1| NusA antitermination factor [Spirosoma linguale DSM 74] Length = 414 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 125/335 (37%), Positives = 212/335 (63%), Gaps = 6/335 (1%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV----EEV 72 A K+IDR +++++ D + R YGT + V IN E+GD+ ++R E+V E++ Sbjct: 14 ARSKNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREIVDDNSEDI 73 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 +Y +I L AR ++G V++ + DFGR VQ+A+Q +IQK+++ E++ Y Sbjct: 74 WDYD-KIPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKDMEKELLYQ 132 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISRENLRPGDRVKSYIYDVRR 191 ++KD+VG++++ V ++ +I+ G S+ + + R E IS++ R G+ VK+ I V Sbjct: 133 KYKDQVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVKAVISRVDM 192 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 P+++LSRT P F+ +LF +EVPEIY+G++ ++ + R+PG RAK+AV S D IDPV Sbjct: 193 LNGTPKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVESYDDRIDPV 252 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVGM+GSR+ +V EL +E ID++ ++ + + AL PA ++ + +D + R+ V Sbjct: 253 GACVGMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDRETKRVSVF 312 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + +Q+SLAIG+ GQN++LA +L ID+ + E Sbjct: 313 LKPDQVSLAIGKGGQNIKLAGRLVDMEIDVFRDNE 347 >gi|76798057|ref|ZP_00780314.1| transcription termination factor NusA [Streptococcus agalactiae 18RS21] gi|77406370|ref|ZP_00783432.1| transcription termination factor NusA [Streptococcus agalactiae H36B] gi|77408786|ref|ZP_00785516.1| transcription termination factor NusA [Streptococcus agalactiae COH1] gi|77411664|ref|ZP_00788004.1| transcription termination factor NusA [Streptococcus agalactiae CJB111] gi|22533395|gb|AAM99284.1|AE014208_24 N utilization substance protein A [Streptococcus agalactiae 2603V/R] gi|76586616|gb|EAO63117.1| transcription termination factor NusA [Streptococcus agalactiae 18RS21] gi|77162308|gb|EAO73279.1| transcription termination factor NusA [Streptococcus agalactiae CJB111] gi|77172631|gb|EAO75770.1| transcription termination factor NusA [Streptococcus agalactiae COH1] gi|77175039|gb|EAO77846.1| transcription termination factor NusA [Streptococcus agalactiae H36B] Length = 379 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 203/343 (59%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I+++ ++ + +S++ A + YG +E N + D +++ + EVV+EV + + Sbjct: 11 EKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ + E+K Sbjct: 71 ISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMREVTFNEYKQHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y V +G V Sbjct: 131 GEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYKVENNPKGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++D +G VG Sbjct: 191 FVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 GS ++ V++ +E ID++ W D A F+ NA+ PA V V+ DE Sbjct: 251 GSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPAEVDMVLFDDE 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|120434526|ref|YP_956870.1| transcription elongation factor NusA [Gramella forsetii KT0803] gi|117576676|emb|CAL65145.1| transcription elongation protein [Gramella forsetii KT0803] Length = 410 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 206/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + YG + + +NP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIWRNRIVVADGEVEDDN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 REISLAQARKIEPDFEVGEDVSEEVKLVDLGRRAILALRQNLISKIHEHDNTNIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI + V + + +I+ D GN + V+ +D I + R G+ V+ I V + Sbjct: 136 LEGEIYTAEVHHIRHRAIILLDDEGN-EIVLPKDRQIPSDFFRKGENVRGIIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ KLF E+PE+++G++ +K V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPTIIMSRTAPGFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T + +DE+ EV++ Sbjct: 255 VGMKGSRIHSIVRELGNENIDVINFTNNEQLFITRALSPAKITSIKMDEEARTAEVMLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEED 349 >gi|29348812|ref|NP_812315.1| transcription elongation factor NusA [Bacteroides thetaiotaomicron VPI-5482] gi|253568843|ref|ZP_04846253.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6] gi|298387892|ref|ZP_06997441.1| transcription termination factor NusA [Bacteroides sp. 1_1_14] gi|29340718|gb|AAO78509.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840862|gb|EES68943.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6] gi|298259299|gb|EFI02174.1| transcription termination factor NusA [Bacteroides sp. 1_1_14] Length = 439 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 212/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D S + G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLTEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV 353 >gi|149277310|ref|ZP_01883452.1| transcription elongation factor NusA [Pedobacter sp. BAL39] gi|149232187|gb|EDM37564.1| transcription elongation factor NusA [Pedobacter sp. BAL39] Length = 411 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 123/329 (37%), Positives = 207/329 (62%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R YGT + V +NP+ GD+ ++R +V+E+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L + D +++G + + FGR A+ +A+Q ++ KV E E+D + ++KD+ Sbjct: 77 EIELAEVKLLDADMEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGEI++G V +V +V D GN + ++ + E I + + GD V++ I V Sbjct: 137 VGEIVTGEVYQVWKKETLVLDDEGN-ELMMPKTEQIPADYFKKGDTVRAVILKVDMVNAT 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P++++SR P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACV Sbjct: 196 PKIIISRIAPDFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T + LD++ V + + Sbjct: 256 GMKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 Q+SLAIGR G N++LA +LTG+ ID+ E Sbjct: 316 QVSLAIGRGGHNIKLAGKLTGYEIDVYRE 344 >gi|259501585|ref|ZP_05744487.1| N utilization substance protein A [Lactobacillus iners DSM 13335] gi|259167103|gb|EEW51598.1| N utilization substance protein A [Lactobacillus iners DSM 13335] Length = 374 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 209/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 16 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 76 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 136 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD + Sbjct: 196 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 256 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 315 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 356 >gi|309804404|ref|ZP_07698478.1| transcription termination factor NusA [Lactobacillus iners LactinV 11V1-d] gi|309807206|ref|ZP_07701180.1| transcription termination factor NusA [Lactobacillus iners LactinV 03V1-b] gi|309808384|ref|ZP_07702285.1| transcription termination factor NusA [Lactobacillus iners LactinV 01V1-a] gi|309809697|ref|ZP_07703552.1| transcription termination factor NusA [Lactobacillus iners SPIN 2503V10-D] gi|312871846|ref|ZP_07731931.1| transcription termination factor NusA [Lactobacillus iners LEAF 3008A-a] gi|312872033|ref|ZP_07732111.1| transcription termination factor NusA [Lactobacillus iners LEAF 2062A-h1] gi|312873348|ref|ZP_07733401.1| transcription termination factor NusA [Lactobacillus iners LEAF 2052A-d] gi|312875707|ref|ZP_07735704.1| transcription termination factor NusA [Lactobacillus iners LEAF 2053A-b] gi|325912466|ref|ZP_08174859.1| transcription termination factor NusA [Lactobacillus iners UPII 143-D] gi|325912547|ref|ZP_08174934.1| transcription termination factor NusA [Lactobacillus iners UPII 60-B] gi|329919859|ref|ZP_08276797.1| transcription termination factor NusA [Lactobacillus iners SPIN 1401G] gi|308163519|gb|EFO65792.1| transcription termination factor NusA [Lactobacillus iners LactinV 11V1-d] gi|308166427|gb|EFO68632.1| transcription termination factor NusA [Lactobacillus iners LactinV 03V1-b] gi|308168369|gb|EFO70486.1| transcription termination factor NusA [Lactobacillus iners LactinV 01V1-a] gi|308169977|gb|EFO72015.1| transcription termination factor NusA [Lactobacillus iners SPIN 2503V10-D] gi|311088772|gb|EFQ47219.1| transcription termination factor NusA [Lactobacillus iners LEAF 2053A-b] gi|311091138|gb|EFQ49529.1| transcription termination factor NusA [Lactobacillus iners LEAF 2052A-d] gi|311092446|gb|EFQ50812.1| transcription termination factor NusA [Lactobacillus iners LEAF 2062A-h1] gi|311092627|gb|EFQ50986.1| transcription termination factor NusA [Lactobacillus iners LEAF 3008A-a] gi|325475713|gb|EGC78886.1| transcription termination factor NusA [Lactobacillus iners UPII 143-D] gi|325478156|gb|EGC81281.1| transcription termination factor NusA [Lactobacillus iners UPII 60-B] gi|328936949|gb|EGG33379.1| transcription termination factor NusA [Lactobacillus iners SPIN 1401G] Length = 362 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 209/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 4 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 124 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD + Sbjct: 184 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 244 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 344 >gi|77414451|ref|ZP_00790602.1| transcription termination factor NusA [Streptococcus agalactiae 515] gi|77159496|gb|EAO70656.1| transcription termination factor NusA [Streptococcus agalactiae 515] Length = 381 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 203/343 (59%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I+++ ++ + +S++ A + YG +E N + D +++ + EVV+EV + + Sbjct: 11 EKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREVVDEVFDSRLE 70 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ + E+K Sbjct: 71 ISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMREVTFNEYKQHE 130 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y V +G V Sbjct: 131 GEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYKVENNPKGVNV 190 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++D +G VG Sbjct: 191 FVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNVDAIGTIVGRG 250 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 GS ++ V++ +E ID++ W D A F+ NA+ PA V V+ DE Sbjct: 251 GSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPAEVDMVLFDDE 310 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 311 DTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 353 >gi|300788185|ref|YP_003768476.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] gi|299797699|gb|ADJ48074.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] Length = 348 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 134/328 (40%), Positives = 201/328 (61%), Gaps = 31/328 (9%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 D+D+ + ++I+ A + Y G S R++I+ +TG L R+L +T Sbjct: 14 DKDIPFETVIEAIETALLTAYKHTEGHQSHARIDIDRKTG---LVRVLA-------HTLT 63 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +V + D + P FGR+A +A+QVI+Q++R+AE ++ + EF K Sbjct: 64 HDGQVDEEWDDT------------PEGFGRIAATTARQVILQRLRDAEHEKTFGEFSTKE 111 Query: 139 GEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI++G ++R N V+V +G+++GV+ E ++ E+ G R+K+Y+ V R R Sbjct: 112 GEIVAGVIQRDARANARGMVVVQVGDTEGVLPSGEQVAGESYEHGSRIKAYVVTVSRSNR 171 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GPQ+ LSR+HP + KLF +EVPEI +G V++ AV+R+PG R K+AV S+ ++ GAC Sbjct: 172 GPQITLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRTKIAVKSTVPGVNAKGAC 231 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G G+RV+ V++EL EKIDI+ +S D A FV NAL PA V V V+DE V+VP Sbjct: 232 IGPVGARVRNVMSELAGEKIDIIDFSEDPARFVGNALSPAKVVSVRVVDERAKTARVVVP 291 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 292 DFQLSLAIGKEGQNARLAARLTGWRIDI 319 >gi|302191441|ref|ZP_07267695.1| transcription elongation factor NusA [Lactobacillus iners AB-1] Length = 362 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 209/341 (61%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 4 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 124 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD + Sbjct: 184 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 244 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 344 >gi|225016950|ref|ZP_03706142.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum DSM 5476] gi|224950264|gb|EEG31473.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum DSM 5476] Length = 412 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 136/340 (40%), Positives = 214/340 (62%), Gaps = 3/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + +A EK I + ++ ++++I A + +G + ++ V I+P T + + Sbjct: 4 EFFDALEMIAKEKGISMEYLIEKISNAITIAVKKDFGGIENVNVVIDPLTRRYKVSIIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EVE+ +I + A +G V L FGR+A Q+AK VI Q +REAER Sbjct: 64 VVREVEDPVNEILIDEALKYSKRAMVGEPVEIKLETKQFGRIAAQTAKHVIRQGIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ++ + DKVGE+I+ TV +++ GNVIV++ S+ ++ ++E + ++L PGD+VK Y Sbjct: 124 EQMLAQMGDKVGEVITATVSKIDPTNGNVIVEIDKSEVILFKNEQLPTDHLLPGDKVKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV ++ + +SRTH + +LF +EVPEI++G V+VK++SR+ GSR K+AV+S D Sbjct: 184 VVDVMASEKRCSLKISRTHKDLVKRLFEIEVPEIFDGTVEVKSISREAGSRTKIAVYSKD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DP+GAC+G +G RV ++ EL EKID+V +S D A F+ AL PA V +V L +D Sbjct: 244 ENVDPIGACIGPKGMRVGNIIDELGGEKIDVVKYSEDPAKFIAEALSPATVVEVQLSDDG 303 Query: 306 GRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +I + VP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 304 EKIAFVSVPDHQLSLAIGNKGQNAKLAARLTGYKIDISPE 343 >gi|325686965|gb|EGD28989.1| N utilization substance protein A [Streptococcus sanguinis SK72] Length = 420 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 143/423 (33%), Positives = 233/423 (55%), Gaps = 28/423 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSGAEATDFDAVAEETVLETVGL 412 Query: 413 ARE 415 RE Sbjct: 413 ERE 415 >gi|315653432|ref|ZP_07906354.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] gi|315489357|gb|EFU78997.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] Length = 374 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 208/341 (60%), Gaps = 2/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 16 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 76 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 136 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD Sbjct: 196 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPD 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 256 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 315 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 356 >gi|153809150|ref|ZP_01961818.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185] gi|149128126|gb|EDM19346.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185] Length = 430 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/334 (37%), Positives = 212/334 (63%), Gaps = 5/334 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E++ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDLTNPNM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A+ D S + G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QIALSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKILELEKDSIYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG II+ V ++ +++ D GN + ++ + E I + R G+ ++ + V + Sbjct: 141 VGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKGETARAVVARVDNKNNN 199 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D IDPVGACV Sbjct: 200 PKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACV 259 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ + L+E+ + EV + E Sbjct: 260 GVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRLNEEEKKAEVFLKPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++SLAIG+ G N++LAS LT +TID+ E ++++ Sbjct: 320 EVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV 353 >gi|312194982|ref|YP_004015043.1| transcription termination factor NusA [Frankia sp. EuI1c] gi|311226318|gb|ADP79173.1| transcription termination factor NusA [Frankia sp. EuI1c] Length = 391 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 124/249 (49%), Positives = 170/249 (68%), Gaps = 5/249 (2%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY--GN--VIVDL 158 P DFGR+A +AKQVI+Q++REA+++ Y ++ D+ EI+SG V+ E G+ V+VDL Sbjct: 85 PADFGRIAQATAKQVIMQRLREAKQEVTYGQYADREHEIVSGVVQHHEQRAGSRVVLVDL 144 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 G +GV+ E + E L GDR+K Y+ V R G V LSRTHP+ + LF +EVPE Sbjct: 145 GTIEGVLPPAEQVPGETLEHGDRIKCYVVHVARGPHGAAVTLSRTHPELVKGLFRLEVPE 204 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + +G V++ A++R+ G R+K+AV S + ++P GAC+G GSRV+AV+ EL EKIDIV Sbjct: 205 VADGTVEIAAIAREAGHRSKIAVRSKVAGVNPKGACIGPMGSRVRAVMAELHGEKIDIVD 264 Query: 279 WSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ATFV NAL PA V++V + + GR V VP QLSLAIGR GQN RLA++LT W Sbjct: 265 WSADPATFVGNALSPARVSRVEVTDLAGRAARVTVPDYQLSLAIGREGQNARLAARLTSW 324 Query: 338 TIDIITEEE 346 IDI ++ E Sbjct: 325 RIDIHSDTE 333 >gi|332358012|gb|EGJ35845.1| N utilization substance protein A [Streptococcus sanguinis SK1056] Length = 420 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/419 (33%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+ V E V +E + EET +EI G Sbjct: 364 EAANELGGFAQEA---EEILGDAAVLE--------TEVSAAEATDFDAVAEETVLEIAG 411 >gi|325695172|gb|EGD37073.1| N utilization substance protein A [Streptococcus sanguinis SK150] Length = 420 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 233/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A ADV E V +E + EET VE G Sbjct: 364 EAANELGGFAQEA---EEILAD-------ADVLETE-VSAAEATDFDAAAEETVVETAG 411 >gi|332364628|gb|EGJ42397.1| N utilization substance protein A [Streptococcus sanguinis SK1059] Length = 420 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/419 (33%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSAAEATDFDAAAEETVLETAG 411 >gi|313158663|gb|EFR58052.1| transcription termination factor NusA [Alistipes sp. HGB5] Length = 410 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 206/333 (61%), Gaps = 5/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++R VVE+ VE+ Sbjct: 17 KNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIWRNRTVVEDGAVEDPNA 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI++ + DP+ +IG +D + FGR AV S +Q + ++ + E+ Y ++ +K Sbjct: 77 QIAVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASRILDLEKASLYEKYSEK 136 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGEI++G V +V V I+D ++ ++ + E I + R GD +K+ + V P Sbjct: 137 VGEIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGDTIKAIVKSVEMNNNQP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+AV S D IDPVGACVG Sbjct: 197 RIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVAVESYDERIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ ++V ELR+E ID+V ++ + + + AL PA ++ + +DE+ V + +Q Sbjct: 257 MKGSRIYSIVKELRNENIDVVNYTANPSLMIQRALNPAKISSITIDEEKMTASVYLKPDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII--TEEED 347 +SLAIG+ G N+RL+ LTG+ ID+ EEED Sbjct: 317 VSLAIGKGGLNIRLSKMLTGYDIDVYREVEEED 349 >gi|325280551|ref|YP_004253093.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324312360|gb|ADY32913.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 412 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/329 (38%), Positives = 203/329 (61%), Gaps = 5/329 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++ V+ D + YGT + + IN + GD+ ++R VVE+ +EN Sbjct: 17 KNIDRATLMRVLEDIFRNMLLKRYGTDENFDIIINIDKGDLEIWRNRTVVEDDKLENPNS 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L A+ D ++G V+D + DFGR +V + +Q + ++ E E+D Y ++KDK Sbjct: 77 EITLTEAKKIDEDYELGEEVTDEVKFKDFGRRSVLALRQNLSARILELEKDNVYNKYKDK 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VG+II G V +V ++V D GN + ++ + E I + + GD +K+ + V Sbjct: 137 VGQIILGEVYQVWKKEMLVLDDEGN-ELILPKQEQIPTDFFKKGDSIKAVVIRVEMRNSN 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P ++LSRT P F+ +LF EVPEI++G++ +K V R PG RAK+AV S D IDPVGACV Sbjct: 196 PYIILSRTSPVFLERLFENEVPEIFDGLITIKNVVRVPGERAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V ELR+E ID++ ++ + ++ AL PA + + +DE + V + E Sbjct: 256 GMKGSRIHGIVRELRNENIDVINYTNNLQLYITRALNPAKIKNIEIDEAHKKANVYLDPE 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++SLAIG+ G N++LASQLTG+ ID+ E Sbjct: 316 EVSLAIGKGGLNIKLASQLTGYDIDVYRE 344 >gi|268608287|ref|ZP_06142014.1| NusA antitermination factor [Ruminococcus flavefaciens FD-1] Length = 416 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/337 (39%), Positives = 204/337 (60%), Gaps = 4/337 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLE 67 + +++ E S++ D+++ + ++ KAA+ Y D IRVEI+P+T +F + + Sbjct: 7 FFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKFEMFIVQD 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 ++++ ++++ VAR DP+ +GG + + GR+A SAKQ I +RE R Sbjct: 67 IIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKGDLREINR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ++ +F+ K E I+ V +VE G V V ++ + R+E I E L G VK Y Sbjct: 127 EQMLGKFEQKEHECITAKVSQVEPGRGTVTVVYEGTELYLFRNEQIPGETLEEGQSVKVY 186 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I + + + P V +SRTH + +LF +EVPEIY+G V+VK++SR+ GSR K+AV+S D Sbjct: 187 ITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTKIAVWSKD 246 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDED 304 ++D VGAC+G + SR+ A+V EL EKIDI+ WS + F+ AL PA V K +V E+ Sbjct: 247 PNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLKTIVTSEE 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VIVP QLSLAIG +GQN +LA++LTG+ IDI Sbjct: 307 ENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDI 343 >gi|322386001|ref|ZP_08059641.1| transcription elongation factor NusA [Streptococcus cristatus ATCC 51100] gi|321269984|gb|EFX52904.1| transcription elongation factor NusA [Streptococcus cristatus ATCC 51100] Length = 413 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 207/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFHVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A ++ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPTEENIDVIEWVSDPAEYIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFHAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSASE 359 >gi|254302278|ref|ZP_04969636.1| N utilization substance protein A [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322470|gb|EDK87720.1| N utilization substance protein A [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 357 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 220/355 (61%), Gaps = 7/355 (1%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S N LE L D + EK I ++ VL + ++ A + YG ++ V ++ E GDI + Sbjct: 6 SKNFLEAL---DELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRENGDIKV 62 Query: 63 F--RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 F +++ +E+ + +ISL+ A+ I +G + + DF R AVQ+ KQ++IQ Sbjct: 63 FASKIIVNTDELLDPNKEISLEDAKQIKKRIKVGDTLKFEVNCEDFRRNAVQNGKQIVIQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R G Sbjct: 123 KVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSVSDVYRVG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRAK+ Sbjct: 183 ERIKVYVLSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ V Sbjct: 243 AVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVSNV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 + ED G V+V QLSLAIG+ GQN RLA++LTG +DI E +++ +++ Sbjct: 303 TILED-GTARVLVAPSQLSLAIGKNGQNARLAARLTGMRVDIKVIENETLKEEEN 356 >gi|159036964|ref|YP_001536217.1| transcription elongation factor NusA [Salinispora arenicola CNS-205] gi|157915799|gb|ABV97226.1| NusA antitermination factor [Salinispora arenicola CNS-205] Length = 347 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 202/340 (59%), Gaps = 29/340 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I D +L+ + ++ A R G RVEI+ +TG Sbjct: 10 ALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTG---------------- 53 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 ++L A++ D GGVV + P DFGR+A +AKQVI+Q++REA + + E Sbjct: 54 ----VALVYAQEMDAD---GGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGE 106 Query: 134 FKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+ + V Sbjct: 107 YVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCVVVHV 166 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + ++ Sbjct: 167 AKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVN 226 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 227 AKGACIGPMGQRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLASRTA 286 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 287 RVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDVEPA 326 >gi|324994121|gb|EGC26035.1| N utilization substance protein A [Streptococcus sanguinis SK678] Length = 420 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/419 (33%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSAAEATDFDAAAEETVLETAG 411 >gi|332362937|gb|EGJ40726.1| N utilization substance protein A [Streptococcus sanguinis SK49] Length = 420 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/419 (34%), Positives = 233/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A ADV E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILAD-------ADVLETE-VSAAEATDFDAAAEETVLETAG 411 >gi|327472754|gb|EGF18181.1| N utilization substance protein A [Streptococcus sanguinis SK408] Length = 420 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/419 (34%), Positives = 233/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A ADV E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILAD-------ADVLETE-VSAAEATDFDAVAEETVLETAG 411 >gi|298206855|ref|YP_003715034.1| transcription elongation factor NusA [Croceibacter atlanticus HTCC2559] gi|83849489|gb|EAP87357.1| transcription elongation factor NusA [Croceibacter atlanticus HTCC2559] Length = 410 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 207/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYT 76 +K IDR +++++ + + A + +G + + INP+ GD+ ++R VVE+ VE+ Sbjct: 16 DKLIDRVTLMAILEEVFRSALKRKFGEDDNFDIIINPDKGDLEIWRNRVVVEDGMVEDDN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ E + Y +FK+ Sbjct: 76 SEISLTQARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAKIHEHDNTNIYNQFKE 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 +GE+ S V + + VI+ D GN + ++ +D I + R G+ V+ I V + Sbjct: 136 LIGEMYSAEVHHIRHRVVILLDDEGN-ELIMPKDRQIPSDFFRKGESVRGVIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P ++ SRT P F+ KLF E+PE+++G++QVK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPAIIFSRTSPLFLEKLFEQEIPEVFDGLIQVKKVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG++GSR+ +V EL +E ID++ ++ + + AL PA VT V L+ + R EV++ Sbjct: 255 VGVKGSRIHGIVRELGNENIDVINYTSNDQLLINRALSPARVTSVKLNSETMRAEVMLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLASQLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLASQLTGYEIDVFREGVEED 349 >gi|332366408|gb|EGJ44159.1| N utilization substance protein A [Streptococcus sanguinis SK355] Length = 417 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 207/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSVAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 306 AEVDQVIFNEEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDI 354 >gi|324991725|gb|EGC23657.1| N utilization substance protein A [Streptococcus sanguinis SK353] Length = 420 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/419 (33%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + ++LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYINLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSAAEATDFDAAAEETVLETAG 411 >gi|225619365|ref|YP_002720591.1| transcription elongation factor NusA [Brachyspira hyodysenteriae WA1] gi|225214184|gb|ACN82918.1| putative transcription elongation factor NusA [Brachyspira hyodysenteriae WA1] Length = 496 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 150/472 (31%), Positives = 259/472 (54%), Gaps = 64/472 (13%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPET-GDISLFRLLE 67 L Q++D EK I +++ V+A +++ A + YG DI+ I+ + + ++++ Sbjct: 9 LQQLSD----EKDISVELLKEVIASTMELALKKKYG--DDIKFHIHFDNKNNPTVYKGAS 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAE 126 VVEEV N +ISL+ A+ D I++G V + ++ FGR+ A+ QK+ E E Sbjct: 63 VVEEVRNKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESTVARTAFFQKISELE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YI Sbjct: 123 KNIIYNEFKRRENQLVNGYFQREHRGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYI 182 Query: 187 YDVR--REQRGPQV----LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 Y V+ ++++G ++ LL+RT P F+ KLF +E+PEI +G +++K V R PG + K+A Sbjct: 183 YKVQGGKDEKGKEIHTKILLTRTKPDFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+ +DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA +++ Sbjct: 243 VASNKPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRII 302 Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + D + +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE D E Sbjct: 303 ITDPEKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTE--------TDIKENP 354 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + + +++I F+D E E+Q A E LE Sbjct: 355 ELLKDIVPLNQI---------FSDNTE---------------------EVQA-ADEELET 383 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ L S+ GID I L +N I ++E+L SV+D++ Sbjct: 384 AEV----------FESNLYSLQGIDEAIIKTLIDNNINSIEELYNMSVEDIM 425 >gi|332878281|ref|ZP_08446007.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683732|gb|EGJ56603.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 410 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 209/344 (60%), Gaps = 5/344 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N +I+L VAR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRIVVEDGAVTNDNQEIALSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 E + Y FKD +G+I+ + + + +I+ D GN + ++ +++ I + + G+ Sbjct: 122 HEYDSTTIYRRFKDLIGQIVVAEIHHIRHKAIILLDDEGN-EIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +GI+ V V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPIFLQRLFEQEIPEIADGIITVNKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + + AL PA VT V Sbjct: 241 VDSFDERIDAVGACVGVRGARIHGIVRELGNENIDVIPFTNNVSLLITRALAPAHVTSVT 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 L+E+ R +V +P E++S AIG+ G N+RLASQLTG+ ID+ E Sbjct: 301 LNEEEKRADVFLPNEEVSKAIGKSGYNIRLASQLTGYEIDVYRE 344 >gi|328944976|gb|EGG39133.1| N utilization substance protein A [Streptococcus sanguinis SK1087] Length = 420 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 141/419 (33%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSAAEATDFDAAAEETILETAG 411 >gi|325688733|gb|EGD30742.1| N utilization substance protein A [Streptococcus sanguinis SK115] Length = 420 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/419 (34%), Positives = 233/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A ADV E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILAD-------ADVLETE-VSAAEATDFDAAAEETVLETAG 411 >gi|327462402|gb|EGF08727.1| N utilization substance protein A [Streptococcus sanguinis SK1057] Length = 420 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/419 (33%), Positives = 231/419 (55%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSGAEATDFDAVAEETVLETAG 411 >gi|315502523|ref|YP_004081410.1| nusa antitermination factor [Micromonospora sp. L5] gi|315409142|gb|ADU07259.1| NusA antitermination factor [Micromonospora sp. L5] Length = 347 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 204/344 (59%), Gaps = 27/344 (7%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++ +E++ Sbjct: 10 ALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY-----AQELDA 64 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 V R+ D + P DFGR+A +AKQVI+Q++REA + + E+ Sbjct: 65 DGT-----VTREWDDT------------PHDFGRIAAMTAKQVILQRLREATDEVHFGEY 107 Query: 135 KDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ + V Sbjct: 108 VGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCVVVHVA 167 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ Sbjct: 168 KGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTTSGVNA 227 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 228 KGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLASRTAR 287 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + Sbjct: 288 VTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSR 331 >gi|145593916|ref|YP_001158213.1| transcription elongation factor NusA [Salinispora tropica CNB-440] gi|145303253|gb|ABP53835.1| transcription termination factor NusA [Salinispora tropica CNB-440] Length = 347 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/340 (41%), Positives = 200/340 (58%), Gaps = 29/340 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I D +L+ + ++ A R G RVEI+ +TG +F +EVE Sbjct: 10 ALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVF-----AQEVE- 63 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 P GGVV + P DFGR+A +AKQVI+Q++REA + + E Sbjct: 64 --------------PD---GGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGE 106 Query: 134 FKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+ + V Sbjct: 107 YVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCVVVHV 166 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + ++ Sbjct: 167 AKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVN 226 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 GAC+G G RV+AV+ EL EKIDI+ WS D A FV NAL PA +V V+D Sbjct: 227 AKGACIGPMGQRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLASRTA 286 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 287 RVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEPA 326 >gi|323342029|ref|ZP_08082262.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464454|gb|EFY09647.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 536 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 133/323 (41%), Positives = 193/323 (59%), Gaps = 1/323 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVENYTCQ 78 ++I +++++ + DS+ KA R G + V I+ T ++ LF VVEEV + + Sbjct: 17 RNISKEIIIDALQDSLIKAYRKQIGVPDALVDVIIDERTQEMKLFHKFLVVEEVMDDELE 76 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + + +G P ++ GR A AK VI QK+REAE+ Y E+ D++ Sbjct: 77 VGITELPEGAEGLQVGEYYMIEEPIVELGRAAATLAKNVIKQKIREAEKQAVYDEYIDQL 136 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 GE+I V+ VE V+++LG S V+ R I E R G +K I DV R+ +G Q+ Sbjct: 137 GEMIMAMVESVEEKFVVLNLGKSLAVMPRAAQIEGETYREGQTLKVVITDVNRDTKGAQI 196 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 L+SR + +LF EVPEI+ G V++KA++R+ G R K+AV+S DS IDP+GAC+G R Sbjct: 197 LVSRADAMLVRRLFENEVPEIFEGQVEIKAIAREAGERTKIAVYSHDSDIDPIGACIGPR 256 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 GSRVQA++ EL+ EKIDI WS + + NAL PA V V + D + VIV QLS Sbjct: 257 GSRVQAIIEELKGEKIDIFEWSDNMVELINNALAPAEVIAVYPNADNKGLVVIVDDNQLS 316 Query: 319 LAIGRRGQNVRLASQLTGWTIDI 341 LAIG+RG+N RLA +LT IDI Sbjct: 317 LAIGKRGKNARLAVRLTKQRIDI 339 >gi|326791500|ref|YP_004309321.1| NusA antitermination factor [Clostridium lentocellum DSM 5427] gi|326542264|gb|ADZ84123.1| NusA antitermination factor [Clostridium lentocellum DSM 5427] Length = 376 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 211/362 (58%), Gaps = 28/362 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD----IRVEINPETGDISLF 63 E + D +A K I+++ ++ + SI+ A + +G ++ I++ I+ +TGD+ +F Sbjct: 4 EFIMAIDQIAKSKGINKEKLIDAIKQSIEVACKKHFGISTNGKQNIKINIDEKTGDVKVF 63 Query: 64 RLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV EEV N ++ + A++ + + + ++ + P +FGR+A Q+AKQV+IQK Sbjct: 64 AAKTVVPDEEVTNELLEVGITEAQNLNRLVQLDDIIDIEITPRNFGRIAAQNAKQVVIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN----LR 177 ++EAER Y E+ K+ +I+ G V R E IV L ++ + E + +N + Sbjct: 124 IKEAERQMVYEEYSVKLNDIVKGKVLRREKNGYIVQLDFTEASLPSTEAMPNDNFDEQME 183 Query: 178 PGDRVKSY--IY--------------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 D + +Y Y D + + G QV++SRTHP+ + +LF EV EI + Sbjct: 184 MNDGIGTYKAFYLLNVKDFNKNENKLDGKSKNAGAQVIVSRTHPELVKRLFEQEVVEIKD 243 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V +K+++R+ GSR K+AV+S+D +DPVGACVG +G R+ +V EL EKID+V WS Sbjct: 244 GTVVIKSIAREAGSRTKIAVYSNDPLVDPVGACVGEKGKRINNIVQELNGEKIDVVHWSE 303 Query: 282 DSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D F+ AL PA V V L+E G +VIVP L+LAIG+ GQNVRLA++L G+ I Sbjct: 304 DPKEFIREALSPAKVIDVELEETEGERNAKVIVPSHILTLAIGKGGQNVRLAAKLCGFKI 363 Query: 340 DI 341 DI Sbjct: 364 DI 365 >gi|183220911|ref|YP_001838907.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911007|ref|YP_001962562.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775683|gb|ABZ93984.1| Transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779333|gb|ABZ97631.1| N utilization substance protein A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 466 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 159/453 (35%), Positives = 239/453 (52%), Gaps = 40/453 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEI---NPETGDISLF 63 L + +KS+DR++VL V+ DS+ A R G +D R ++ + +I + Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L +VV E ++SL+ A+ DP I++G + P D RV AKQ++ Q++R Sbjct: 72 VLRDVVAEKTINPLEVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRLR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + E++ Y E+K K GE+ G +R + + +DLG +G++ + + E R GDR+K Sbjct: 132 DMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGKVEGIMLKKDQNPGEKYRQGDRLK 191 Query: 184 SYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + I V R P + LSR F+ KLF ME+PE+Y+GIV+++ V+R P R K+ V Sbjct: 192 AIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKVVV 251 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S S +DPVGACVGM+G R+QA+V EL +E+IDIV+ S + + F+ NA+ PA +V + Sbjct: 252 TTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEVHV 311 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT------------------ 343 D G VIVP E LSLAIG G NV+L SQL+G+ IDI T Sbjct: 312 DRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTVSQYNQELASPEAREKLD 371 Query: 344 -----------EEEDSINRQ-KDFNERTQFFMQAINVDEI---IAHLLVAEGFADVEELA 388 E ED N+ +D E F + + I LL A G +VE L Sbjct: 372 RLFNAQQEAMEESEDGYNQSGQDEEEEDSGFTPLSEIPGLTPRIVGLLEAGGIKNVETLL 431 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 E++ I G + TA +I RE +E ++ Sbjct: 432 EFSQEELSKISGIGKTTAEQILRLLRESIEWVE 464 >gi|291513589|emb|CBK62799.1| transcription termination factor NusA [Alistipes shahii WAL 8301] Length = 409 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 205/333 (61%), Gaps = 5/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++R VVE+ VE+ Sbjct: 17 KNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIWRNRTVVEDDAVEDPNA 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QIS+ + DP+ +IG +D + FGR AV S +Q + ++ + E+ Y ++ +K Sbjct: 77 QISVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASRILDLEKASLYEKYSEK 136 Query: 138 VGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I++G V +V V I+D ++ ++ + E I + R GD +K+ + V P Sbjct: 137 VGDIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGDTIKAIVKSVEMNNNQP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+AV S D IDPVGACVG Sbjct: 197 RIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVAVESYDERIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ ++V ELR+E ID+V ++ + + +L PA V+ + +DE+ V + +Q Sbjct: 257 MKGSRIYSIVKELRNENIDVVNYTANPTLMIQRSLNPAKVSSITIDEEKMTASVYLKPDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII--TEEED 347 +SLAIG+ G N+RL+ LTG+ ID+ EEED Sbjct: 317 VSLAIGKGGLNIRLSKMLTGYDIDVYREVEEED 349 >gi|72161180|ref|YP_288837.1| transcription elongation factor NusA [Thermobifida fusca YX] gi|71914912|gb|AAZ54814.1| transcription termination factor NusA [Thermobifida fusca YX] Length = 329 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 137/330 (41%), Positives = 200/330 (60%), Gaps = 24/330 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+V+ + D++ A R G ++ RVE++ TG ++++ EE + Sbjct: 14 EKDISVDLVVKAIEDALLIAYRRQEGPDTNARVELDRATGHVTVW-----AEERDEEG-- 66 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ++ R+ D + P FGR+A +AKQVI+Q++R+AE + EF + Sbjct: 67 ---RLIREYDAT------------PSGFGRIAASTAKQVILQRLRDAEDEITLGEFAGRE 111 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +I+SG V++ + NV+VDLG + ++ E + E G+R+++Y+ VRR RGP Sbjct: 112 SQIVSGVVQQGKDPRNVLVDLGRVEAILPPQEQVPTETYTHGERLRAYVVQVRRGHRGPS 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ ++ GAC+G Sbjct: 172 ITLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVKSNKPGVNAKGACIGP 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 GSRV+ V+ ELR EKIDIV +S D A FV NAL PA VT V VLD VIVP Q Sbjct: 232 LGSRVRNVMNELRGEKIDIVDYSDDPAQFVANALSPAQVTHVEVLDAAARVARVIVPDYQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 SLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 292 QSLAIGKEGQNARLAARLTGWRIDIRSDTE 321 >gi|332520007|ref|ZP_08396471.1| transcription termination factor NusA [Lacinutrix algicola 5H-3-7-4] gi|332044566|gb|EGI80760.1| transcription termination factor NusA [Lacinutrix algicola 5H-3-7-4] Length = 410 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 206/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + +G + + INP+ GD+ ++R VV EVE Sbjct: 16 DKLIDRVTLMAILEDVFRSALKKKFGDDDNFDIIINPDKGDLEIWRNRIVVADGEVEEPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ E + + +FK+ Sbjct: 76 QEISLTAARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISKIHEHDNTNIFKQFKE 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 G++ + V + + VI+ D GN + ++ +D+ I + R GD V+ I V + Sbjct: 136 LEGDLYTAEVHHIRHRAVILLDDEGN-EIILPKDKQIPSDFFRKGDNVRGIIDSVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPAIIMSRTSPKFLEKLFESEIPEVFDGLITIKNVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + ++ AL PA VT + +DE+ R E I+ Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTNNLQLYITRALSPARVTSIKIDEENKRAEAILKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYDIDVFREGAEED 349 >gi|302865966|ref|YP_003834603.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] gi|302568825|gb|ADL45027.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] Length = 347 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 204/344 (59%), Gaps = 27/344 (7%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++ +E++ Sbjct: 10 ALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY-----AQELDA 64 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 V R+ D + P DFGR+A +AKQVI+Q++REA + + E+ Sbjct: 65 DGT-----VTREWDDT------------PHDFGRIAAMTAKQVILQRLREATDEVHFGEY 107 Query: 135 KDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ + V Sbjct: 108 VGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCVVVHVA 167 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ Sbjct: 168 KGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTTSGVNA 227 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 228 KGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLASRTAR 287 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + Sbjct: 288 VTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSR 331 >gi|325697660|gb|EGD39545.1| N utilization substance protein A [Streptococcus sanguinis SK160] gi|327490545|gb|EGF22326.1| N utilization substance protein A [Streptococcus sanguinis SK1058] Length = 420 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDI 354 >gi|261416680|ref|YP_003250363.1| NusA antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373136|gb|ACX75881.1| NusA antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327396|gb|ADL26597.1| N utilization substance protein A [Fibrobacter succinogenes subsp. succinogenes S85] Length = 407 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 144/362 (39%), Positives = 208/362 (57%), Gaps = 16/362 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + ++ LL + V +KS+D V+L + ++ AAR I V+I+ ET ++ Sbjct: 1 MKNEPKVNLLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEV 60 Query: 61 SLFRLLEVVEEVENYTCQIS-------------LKVARDRDPSIDIGGVVSDPLPPMDFG 107 +F +EVV++ +Y ++ + ARD + G + LP FG Sbjct: 61 HVFLNVEVVDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIR 166 R A+Q+AKQ++ Q +R AE R ++ ++G II+GTV R+E NVIVDLGN + + Sbjct: 121 RQAIQTAKQLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELP 180 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E I E L G VK+ I V + G QV+LSR++ F+ L EVPEIY G V+ Sbjct: 181 AREQIPHERLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVE 240 Query: 226 VKAVSRDPGSR-AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +KAV+RD +R AK+AV+S D IDPVGACVGM+G+RVQ +V EL +E+IDIV W + Sbjct: 241 IKAVARDSKNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFD 300 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV +L PA V K+ D RI +IV E L+ AIG+ GQNV LA +L +D+ E Sbjct: 301 VFVQRSLAPASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDVHGE 360 Query: 345 EE 346 +E Sbjct: 361 QE 362 >gi|332665272|ref|YP_004448060.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100] gi|332334086|gb|AEE51187.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100] Length = 416 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 128/326 (39%), Positives = 197/326 (60%), Gaps = 4/326 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR + V+ D + + +G+ + V +N + GD+ L+R+ E+V EV + Sbjct: 14 KNIDRPTMARVLEDVFRTLIKKKFGSDDNFNVIVNTQNGDLELWRVREIVPDGEVTDDRA 73 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QIS+ A D +IG + L DFGR A+ +A+Q +I ++ E E+D Y + ++ Sbjct: 74 QISISEALAIDEDYEIGEECYERLQLEDFGRRAIMAARQTLISRIMELEKDEVYKSYSER 133 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGE+I G + ++ +V D ++ V+ R ETI + R GD VK I V Sbjct: 134 VGEVIVGEIHQILKKEFLVVDDATGNELVLPRTETIKADFFRKGDMVKGIIRRVELRNNT 193 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P V++SRT F+ KL EVPEI +G++ +K + R PG RAK+AV S D IDPVGACV Sbjct: 194 PIVVMSRTDNAFLEKLLEAEVPEIEDGLISIKKIVRLPGERAKVAVESYDDRIDPVGACV 253 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL +E IDIV ++ +++ ++ AL PA VT++ L+ + +V + E Sbjct: 254 GMKGSRIHGIVRELNNENIDIVNYTNNASLYIQRALTPAKVTRIELNTETNHADVYLEPE 313 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDI 341 Q+SLAIG+ G N++LASQLTG+ ID+ Sbjct: 314 QVSLAIGKSGTNIKLASQLTGYEIDV 339 >gi|327467113|gb|EGF12623.1| N utilization substance protein A [Streptococcus sanguinis SK330] Length = 420 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 140/419 (33%), Positives = 230/419 (54%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+ V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILGDAAVLE--------TEVSAAEATDFDAVAEETVLETAG 411 >gi|125718693|ref|YP_001035826.1| transcription elongation factor NusA [Streptococcus sanguinis SK36] gi|125498610|gb|ABN45276.1| N utilization substance protein A, putative [Streptococcus sanguinis SK36] Length = 420 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 306 AEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDI 354 >gi|327459330|gb|EGF05676.1| N utilization substance protein A [Streptococcus sanguinis SK1] Length = 420 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDI 354 >gi|317508529|ref|ZP_07966195.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] gi|316253173|gb|EFV12577.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] Length = 342 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 207/352 (58%), Gaps = 31/352 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q A+ EK + + ++ +A ++ A + G +D RV+I+ + G + + Sbjct: 5 VQTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHHADARVDIDRKHGAVKVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD +I G D P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 59 --------------VAERDEDGNILGEYDDT--PADFGRIATMTARQVILQRLRDAEGDQ 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNS----DGVIRRDETISRENLRPGDR 181 + + K GEI++G V+R E G IV LG+ +GV+ E + E+L GDR Sbjct: 103 GFADLPVKEGEIVAGVVQRDARANERGLQIVKLGSELKSYEGVLPVAEQVPGESLVHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI G VQ+ AV+R+ G R+K+AV Sbjct: 163 VKCYVVSVKAGRRGPQITLSRTHPNLVRKLFALEVPEIGEGSVQIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVV 300 S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA + V Sbjct: 223 KSTVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALATRV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 LD + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ Sbjct: 283 LDPVAKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARR 334 >gi|323350354|ref|ZP_08086018.1| transcription elongation factor NusA [Streptococcus sanguinis VMC66] gi|322123427|gb|EFX95103.1| transcription elongation factor NusA [Streptococcus sanguinis VMC66] Length = 420 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDI 354 >gi|330836562|ref|YP_004411203.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374] gi|329748465|gb|AEC01821.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374] Length = 477 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 128/330 (38%), Positives = 209/330 (63%), Gaps = 5/330 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY--- 75 EK I +D+V+S + D ++ A + +GT ++ V+ + + +++L +VE+ ENY Sbjct: 15 EKGISQDLVISTIEDFLRAAYKRKFGTDANAVVQFSDDLSNVTLNARRIIVED-ENYYDM 73 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 T +ISL+ A + +IG + P+ +F R+++QSAKQ Q +R+ ++D + E++ Sbjct: 74 TTEISLEEAEELVGKCEIGDELLVPIDLKEFDRISIQSAKQRSRQSLRDIQKDTTFKEYE 133 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 +K G++I G V+R + VD+G+++G++ R SRE R GD+VK Y+ V + G Sbjct: 134 NKTGQLIIGYVQRQIGDDFYVDIGSTEGILPRRNQSSREVYRQGDKVKFYVEKVEKTDHG 193 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRT + + LF +EVPEIY+ +++ + R+ G R K+AV+S IDPVGACV Sbjct: 194 VRVVLSRTSAELVKLLFELEVPEIYDHSIEIHDIVREAGYRTKVAVYSHRDDIDPVGACV 253 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPK 314 G++G R+Q ++ E+ EKIDI+ + P+ F+ NAL PA V V+ L ++ R IV Sbjct: 254 GLKGMRIQTIMKEIEGEKIDILKYDPNPEVFIRNALAPAEVKDVILLKQNERRALAIVDD 313 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 QLSLAIG++G NVRLA+QL+ W I++ TE Sbjct: 314 TQLSLAIGKQGLNVRLANQLSDWIIEVKTE 343 >gi|330997781|ref|ZP_08321616.1| transcription termination factor NusA [Paraprevotella xylaniphila YIT 11841] gi|329569669|gb|EGG51434.1| transcription termination factor NusA [Paraprevotella xylaniphila YIT 11841] Length = 420 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 210/347 (60%), Gaps = 6/347 (1%) Query: 4 ANRLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D A K+IDR ++SV+ +S + L+G+ + V +NP+ GD Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV EV++ +ISL AR D ++G VS+ + FGR A+ + +Q + Sbjct: 62 EIYRNRTVVADGEVKDGNREISLTEARQIDEDYEVGEEVSENVDFAGFGRRAILTLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLR 177 K+ E E D Y ++KD+VGEI+S V ++ ++ VD ++ ++ + E I + R Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPATVN 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E Sbjct: 302 SVRIHEEERKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFRE 348 >gi|332881709|ref|ZP_08449357.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680348|gb|EGJ53297.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 420 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 210/347 (60%), Gaps = 6/347 (1%) Query: 4 ANRLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D A K+IDR ++SV+ +S + L+G+ + V +NP+ GD Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV EV++ +ISL AR D ++G VS+ + FGR A+ + +Q + Sbjct: 62 EIYRNRTVVADGEVKDDNREISLTEARRIDEDYEVGEEVSENVDFAKFGRRAILTLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLR 177 K+ E E D Y ++KD+VGEI+S V ++ ++ VD ++ ++ + E I + R Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPAAVN 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E Sbjct: 302 SVRIHEEEHKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFRE 348 >gi|227875842|ref|ZP_03993968.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC 35243] gi|269977478|ref|ZP_06184450.1| transcription termination factor NusA [Mobiluncus mulieris 28-1] gi|306819123|ref|ZP_07452837.1| transcription termination factor NusA [Mobiluncus mulieris ATCC 35239] gi|307700036|ref|ZP_07637085.1| transcription termination factor NusA [Mobiluncus mulieris FB024-16] gi|227843590|gb|EEJ53773.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC 35243] gi|269934394|gb|EEZ90956.1| transcription termination factor NusA [Mobiluncus mulieris 28-1] gi|304648099|gb|EFM45410.1| transcription termination factor NusA [Mobiluncus mulieris ATCC 35239] gi|307614797|gb|EFN94017.1| transcription termination factor NusA [Mobiluncus mulieris FB024-16] Length = 327 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/335 (40%), Positives = 203/335 (60%), Gaps = 28/335 (8%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V EK +D + +++ + +++ KA R+ G + RVE++ +TG++ ++ + E+ EE Sbjct: 11 VEAEKGMDFESLVATVEEALLKAYRNQSGVKAPARVEVDRKTGEVKVW-VTELDEE---- 65 Query: 76 TCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL-E 133 G + D + P DFGR A + K VIIQ+ +E E D+Q L + Sbjct: 66 ------------------GNALGDVEVTPEDFGRTAAATVKSVIIQRFQE-EEDKQVLGD 106 Query: 134 FKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 FK+++G+++SG V I VDLG+ +GVI E E+ R G+R++ Y+ R Sbjct: 107 FKERIGQVVSGVVVAARDPKFIAVDLGDIEGVIPPAEQAPGEHFRDGERIRVYVLSAARG 166 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP + LSRTHP + LF+ EVPEI G+V +++V+R+PG R K+AV + + ++P G Sbjct: 167 MKGPHIELSRTHPGLVQGLFNREVPEIEKGLVVIESVAREPGHRTKIAVRALEKGMNPKG 226 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 AC+G GSRV+AV+ EL EKIDI+ WS + F+ NAL PA V V VLDED V+ Sbjct: 227 ACIGPNGSRVRAVMNELNGEKIDIIDWSDNPVEFIANALSPAKVVSVRVLDEDRRLARVV 286 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 287 VPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDSE 321 >gi|163753871|ref|ZP_02160994.1| transcription elongation factor NusA [Kordia algicida OT-1] gi|161326085|gb|EDP97411.1| transcription elongation factor NusA [Kordia algicida OT-1] Length = 410 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 208/335 (62%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + +G+ + + INP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIWRNRIVVADGEVEDPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L AR +P ++G VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 QEIELTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISKIHEHDNTTIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 VG+I + V + + VI+ D GN + V+ ++ I + R G+ V+ I V + Sbjct: 136 LVGDIYTAEVHHIRHRAVILLDDEGN-EIVLPKENQIPSDFFRKGENVRGIIDRVDLKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P+F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPMIVMSRTAPEFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + ++ AL PA V+ + +DE+ R+EV + Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTTNLQLYITRALSPARVSSLKIDEEAKRVEVFLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIG+ G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGKGGFNIRLAGQLTGYEIDVYREGVEED 349 >gi|256396850|ref|YP_003118414.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928] gi|256363076|gb|ACU76573.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928] Length = 324 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/330 (40%), Positives = 202/330 (61%), Gaps = 29/330 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 DR + + + I+ A Y G + RV+++ +G ++++ VE++E+ + Sbjct: 14 DRGIPFEKLVEDIEAALLIAYKRTDGAKTRARVQVDRSSGHVTVW----AVEDIEDGST- 68 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 R+ D + P +FGR+A +AKQVI+Q++R+ E ++ + EF + Sbjct: 69 ------REYDDT------------PSEFGRIASTTAKQVILQRLRDHEDEQTFGEFSGRK 110 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G++I+G V++ + V+V++G +G + E + E R G+R+K Y+ DVRR QRGPQ Sbjct: 111 GDLITGVVQQGRDPRAVLVNIGKIEGTLPAAEQVPGEEYRHGERLKCYVVDVRRGQRGPQ 170 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI G V++ A++R+ G R K+AV S + ++ GAC+G Sbjct: 171 VTLSRTHPDLVRKLFALEVPEIAEGAVEITAIAREAGHRTKIAVRSHRAGVNAKGACIGP 230 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D D VIVP Q Sbjct: 231 MGARVRNVMAELHGEKIDIVDWSEDPAEMVGNALSPARVSKVQVVDLDQRSARVIVPDFQ 290 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 291 LSLAIGKEGQNARLAARLTGWRIDIRSDAE 320 >gi|163786551|ref|ZP_02180999.1| transcription elongation factor NusA [Flavobacteriales bacterium ALC-1] gi|159878411|gb|EDP72467.1| transcription elongation factor NusA [Flavobacteriales bacterium ALC-1] Length = 410 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 204/335 (60%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D ++ A + YG + + INP+ GD+ ++R VV EVE Sbjct: 16 DKLIDRVTLMAILEDVLRNALKKKYGDDDNFDIIINPDKGDLEIWRNRIVVANGEVEEPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L A+ +P ++G V++ + +D GR ++ + +Q +I K+ E + Y FK+ Sbjct: 76 QEIELSEAQKIEPDFEVGEDVAEEVKLIDLGRRSILALRQNLISKIHEHDNTNIYKHFKE 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI + V + + +I+ D GN + ++ +D I + R G+ V+ I V + Sbjct: 136 LEGEIYTAEVHHIRHRAIILLDDDGN-EIILPKDRQIPSDFFRKGENVRGIIESVELKGS 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPAIIMSRTSPLFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + FV AL PA VT + LDE+ R EV++ Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTNNIQLFVTRALSPARVTSLKLDEENMRAEVLLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVFREGAEED 349 >gi|89889478|ref|ZP_01200989.1| transcription termination factor NusA [Flavobacteria bacterium BBFL7] gi|89517751|gb|EAS20407.1| transcription termination factor NusA [Flavobacteria bacterium BBFL7] Length = 412 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 207/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + YG + + INP+ GD+ ++R VV EVE+ Sbjct: 18 DKMIDRVTLMAILEDVFRSALKRKYGDDDNFDIIINPDKGDLEIWRNRVVVADGEVEDDN 77 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L AR +P ++G V++ + + GR A+ + +Q +I K+ E + Y +FK+ Sbjct: 78 SEIELTAARKIEPDYEVGEDVAEEVKLIQLGRRAILALRQNLIAKIHEHDNTNIYKQFKE 137 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GE+ S V + + +I+ D GN + ++ +D I + R G+ V+ I V Sbjct: 138 LEGELYSAEVHHIRHRAIILLDDEGN-EIIMPKDRQIGSDFFRKGENVRGIIESVELRGN 196 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P ++LSRT P+F+ KLF E+PE+++G++ VKAV R+PG +AK+AV S D IDPVGAC Sbjct: 197 KPNIILSRTSPKFLEKLFEQEIPEVFDGLITVKAVVREPGEKAKVAVDSYDDRIDPVGAC 256 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG++GSR+ +V EL +E ID++ ++ ++ ++ AL PA + + ++E+ + EV + Sbjct: 257 VGVKGSRIHGIVRELGNENIDVINYTSNTQLYIARALSPAKIISMEINEETKKAEVRLNP 316 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGRRG N+RLA +LTG+ ID+I + EED Sbjct: 317 EEVSKAIGRRGHNIRLAGKLTGYDIDVIRDGAEED 351 >gi|331698436|ref|YP_004334675.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326953125|gb|AEA26822.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 348 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/334 (41%), Positives = 203/334 (60%), Gaps = 29/334 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I D+VL + ++ A + G R++I+ +TG L R+L +E+ + Sbjct: 10 AIERDKDIPFDMVLEAIETALLTAYKHTDGHEPHARIDIDRKTG---LVRVL--AQELGD 64 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +VAR+ D + P FGRVA +A+QVI+Q++R+AE +R + EF Sbjct: 65 -----DGQVAREWDDT------------PEGFGRVAATTARQVIVQRLRDAEHERTFGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGNS--DGVIRRDETISRENLRPGDRVKSYIYD 188 K GEII+G V+ N V+V L S +GV+ + E + E + GDR++ Y+ Sbjct: 108 SAKEGEIITGEVQADSRANARGVVVVSLSGSQAEGVLPQTEQVPGERYQHGDRLRCYVLG 167 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RG Q+ LSRTHP + KLF +EVPE+ +G V++ AV+R+ G R K+AV S+ + Sbjct: 168 VSRGPRGTQITLSRTHPNLVRKLFALEVPELVDGSVEIVAVAREAGHRTKIAVRSTVPGV 227 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGR 307 +P GAC+G G+RV+ V++EL EKIDI+ WS D ATFV NAL P+ +V+ V+D Sbjct: 228 NPKGACIGPMGARVRGVMSELAGEKIDIIDWSDDPATFVGNALSPSKVVSVTVIDAKTRT 287 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 321 >gi|19705318|ref|NP_602813.1| transcription elongation factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328566|ref|ZP_06871085.1| transcription termination factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713289|gb|AAL94112.1| N utilization substance protein A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154375|gb|EFG95174.1| transcription termination factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 357 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/342 (38%), Positives = 213/342 (62%), Gaps = 7/342 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S N LE L D + EK I ++ VL + ++ A + YG ++ V ++ E GDI + Sbjct: 6 SKNFLEAL---DELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRENGDIKV 62 Query: 63 F--RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 F +++ +++ + +ISL+ A+ + +G + + DF R AVQ+ KQ++IQ Sbjct: 63 FASKIIVNADDLLDPNKEISLEDAKKIKKRVKVGDTLKFEVNCEDFRRNAVQNGKQIVIQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R G Sbjct: 123 KVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSISDVYRVG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRAK+ Sbjct: 183 ERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ V Sbjct: 243 AVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVIEEFVSAVLSPAVVSNV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + ED G V+V QLSLAIG+ GQN RLA++LTG +DI Sbjct: 303 TILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDI 343 >gi|238063380|ref|ZP_04608089.1| transcription elongation factor nusA [Micromonospora sp. ATCC 39149] gi|237885191|gb|EEP74019.1| transcription elongation factor nusA [Micromonospora sp. ATCC 39149] Length = 347 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 201/341 (58%), Gaps = 27/341 (7%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I D +L+ + ++ A R G S RVEI+ + G ++ +E+++ Sbjct: 10 ALEREREIPFDTILAAIETALLTAYRHTEGAESHARVEIDRKNGAALVY-----AQELDD 64 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 V R+ D + P DFGR+A +AKQVI+Q++REA + + E+ Sbjct: 65 DGT-----VVREWDDT------------PHDFGRIAAMTAKQVILQRLREATDEVHFGEY 107 Query: 135 KDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ + V Sbjct: 108 VGRDGDLVTGVVQAHEARSEKGIVSVDLGKLEGVLPQSEQVPGERYTHGERIRCVVVHVA 167 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ ++ Sbjct: 168 KGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSAVPGVNA 227 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 228 KGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLATRTAR 287 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 288 VTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQATT 328 >gi|324992028|gb|EGC23950.1| N utilization substance protein A [Streptococcus sanguinis SK405] Length = 420 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 140/419 (33%), Positives = 230/419 (54%), Gaps = 28/419 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++ + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELRDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATE--FEEM 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + NE F +A +EI+A V E V +E + EET +E G Sbjct: 364 EAANELGGFAQEA---EEILADAAVLE--------TEVSAAEATDFDAAAEETVLETAG 411 >gi|320528334|ref|ZP_08029496.1| transcription termination factor NusA [Solobacterium moorei F0204] gi|320131248|gb|EFW23816.1| transcription termination factor NusA [Solobacterium moorei F0204] Length = 581 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 134/341 (39%), Positives = 207/341 (60%), Gaps = 3/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRV--EINPETGDISLFRL 65 +LL V +K++ ++VL + +++ KA + + DI V EIN ++ I +++ Sbjct: 7 QLLNAIRGVEDDKNVPENIVLEALTEAVAKAFKK-DSELQDIEVKAEINKKSKTIDIYQY 65 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ A+ D + ++GG V + R A AK V QK+REA Sbjct: 66 YNVVEEVEDDELEISLEDAKKLDSNAELGGQVREKKEITSMSRAAASLAKNVFRQKIREA 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y E+ D+ E++ GTV+ V+ ++ LG + ++ + I E L G ++ Sbjct: 126 EKVAVYNEYIDQKDEMVIGTVESVKDKFTLISLGKTVALLSKSAEIPHEKLTEGQSIRVV 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV++E +G QVL+SR + +LF EVPEIY G+V++K+++R+ G R K+AV S + Sbjct: 186 ITDVQKETKGSQVLVSRADATLVKRLFEKEVPEIYQGVVEIKSIAREAGERTKMAVLSHN 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G+C+G RGSRVQ ++ EL EKIDI W+ D V NAL PA + V+ +D Sbjct: 246 PDVDPIGSCIGPRGSRVQKIIDELHGEKIDIFQWNDDITELVKNALAPAEIISVLPGQDD 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + VIV ++QLSLAIG+RG+N RLA +LTG IDI T +E Sbjct: 306 NSLLVIVSEDQLSLAIGKRGKNARLAVKLTGHKIDIKTRQE 346 >gi|149370939|ref|ZP_01890534.1| transcription elongation factor NusA [unidentified eubacterium SCB49] gi|149355725|gb|EDM44283.1| transcription elongation factor NusA [unidentified eubacterium SCB49] Length = 410 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/335 (37%), Positives = 205/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYT 76 +K IDR +++++ + + A + YG+ + + +NP+ GD+ ++R VV +++ + Sbjct: 16 DKQIDRVTLMAILEEVFRNALKKKYGSDDNFDIIVNPDKGDLEIWRNRVVVADIDVMDPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR + ++G VS + MD GR ++ + +Q +I K+ E + Y +FKD Sbjct: 76 EEISLTDARKIEDDFEVGEDVSQEVKLMDLGRRSILALRQNLISKIHEHDNTIIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI + V + + VI+ D GN + ++ +D I + R GD V+ + V + Sbjct: 136 MEGEIYTAEVHHIRHRAVILLDDEGN-EMIMPKDRQIPSDFFRKGDNVRGIVESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SR P F+ KLF E+PE+++G++ VK V R PG +AK+AV + D IDPVGAC Sbjct: 195 KPTIIMSRASPLFLEKLFEQEIPEVFDGLINVKKVVRIPGEKAKVAVDTYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + F+ AL PA VT V ++E+ R EVI+ Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTENITLFITRALSPAKVTSVKVNEENKRAEVILKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID++ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVLREGAEED 349 >gi|15605801|ref|NP_213178.1| transcription elongation factor NusA [Aquifex aeolicus VF5] gi|2982967|gb|AAC06581.1| transcription termination NusA [Aquifex aeolicus VF5] Length = 337 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 167/242 (69%), Gaps = 1/242 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNS 161 P D R+A +AK+ +++ AE++R YLEFK+ GEI+ G V++V E G+VIVDLG Sbjct: 76 PEDLNRLAAYAAKEEFYKELERAEQERGYLEFKELEGEIVYGIVRKVLENGDVIVDLGRI 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 D ++ + E + +N + GD+VK+ + +VR+ + P ++LSRTHP F+ KL EVPEI Sbjct: 136 DAILPKREQLPTDNFKTGDKVKALLLEVRKRRGEPVLILSRTHPNFLRKLLEQEVPEIKE 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V++KAV+R PG RAK+AV + + +DPVG VG++G R+Q V EL EKID++ WS Sbjct: 196 GLVEIKAVARIPGERAKVAVEAKEMKMDPVGIVVGLKGMRIQKVSEELGGEKIDVIRWSD 255 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A + AL PA K+ L R EV VP+E+LSLAIG++G NV+LAS+LTGW ID+ Sbjct: 256 DIAELIKRALAPAHPEKIKLFPYEKRAEVAVPEEELSLAIGKKGINVKLASKLTGWHIDV 315 Query: 342 IT 343 ++ Sbjct: 316 LS 317 >gi|325286756|ref|YP_004262546.1| NusA antitermination factor [Cellulophaga lytica DSM 7489] gi|324322210|gb|ADY29675.1| NusA antitermination factor [Cellulophaga lytica DSM 7489] Length = 410 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 203/334 (60%), Gaps = 5/334 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ + + A + +G+ + + INP+ GD+ ++R VVE EVE Sbjct: 16 DKFIDRVTLMAILEEVFRNALKKKFGSDDNFDIIINPDKGDLEIWRNRIVVEDGEVEEPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 EEISLTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAKIHEHDNTTIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 GEI + V + + VI VD ++ V+ +D I + R GD V+ I V + Sbjct: 136 LEGEIYTAEVHHIRHRAVILVDDEGNEIVMPKDRQIPSDFFRKGDNVRGIIESVELKGNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P +++SRT P+F+ +LF E+PE+++G++ +K R PG +AK+AV S D IDPVGACV Sbjct: 196 PSIIMSRTSPKFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVAVDSYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSR+ +V EL +E ID+V W+ + V AL PA ++ V LD++ +V + + Sbjct: 256 GVKGSRIHGIVRELGNENIDVVNWTSNPQLLVTRALSPAKISSVKLDDEKMTAQVYLKPD 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 ++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 316 EVSRAIGRGGHNIRLAGQLTGYEIDVFREGVEED 349 >gi|305665253|ref|YP_003861540.1| transcription elongation factor NusA [Maribacter sp. HTCC2170] gi|88710006|gb|EAR02238.1| transcription elongation factor NusA [Maribacter sp. HTCC2170] Length = 410 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 204/335 (60%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + +G+ + + INP+ GD+ ++R VVE EVE Sbjct: 16 DKFIDRVTLMAILEDVFRNALKKKFGSDENFDIIINPDKGDLEIWRNRIVVEDGEVEEPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL A+ +P ++G VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 EEISLSEAQKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISKIHEHDNTTIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI + V + + VI+ D GN + ++ +D I + R GD V+ I V + Sbjct: 136 LEGEIYTAEVHHIRHKAVILLDDEGN-EIILPKDRQIPSDFFRKGDNVRGIIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SR+ P+F+ +LF E+PE+++G++ +K R PG +AK+AV S D IDPVGAC Sbjct: 195 KPSIIMSRSSPRFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V L+++ +V + Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINWTNNPQLLVTRALSPARVSSVKLNDEKMTAQVYLRP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEED 349 >gi|333029428|ref|ZP_08457489.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011] gi|332740025|gb|EGJ70507.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011] Length = 420 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 205/328 (62%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K ID+ ++SV+ +S + + GT + V +NP+ GD ++R EVV + V + Sbjct: 21 KKIDKTTMISVLEESFRSVIAKIVGTDENYDVIVNPDQGDFEIWRNREVVADGDVTDENM 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S +IG V+D + FGR A+ + +Q + K+ E E+D Y ++ ++ Sbjct: 81 QISLTEARKTDESYEIGEEVTDKVHFESFGRRAILNLRQTLASKILELEKDSLYNKYIER 140 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG I+S V ++ ++ VD ++ ++ + E I R+ R G+ V++ + V + P Sbjct: 141 VGMIVSAEVYQIWKKEILLVDDEGNELILPKSEQIPRDFFRKGESVRAVVARVDNKNNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +LF +EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIILSRTSPLFLERLFELEVPEINDGLITIKKVARIPGERAKVAVESYDDRIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSR+ +V EL +E ID++ ++ + F+ +L PA ++ + L+E+ + E+ + ++ Sbjct: 261 VKGSRIHGIVRELCNENIDVINYTSNIQLFIQRSLSPATISSIRLNEEEHKAEIFLQPDE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +SLAIG+ G N++LAS LT +TID+ E Sbjct: 321 VSLAIGKGGLNIKLASMLTEYTIDVFRE 348 >gi|294783786|ref|ZP_06749110.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA] gi|294480664|gb|EFG28441.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA] Length = 353 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 218/344 (63%), Gaps = 6/344 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I + V Sbjct: 9 FLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEIKVLASKTV 68 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V+ ++ + +ISL+ A++ + IG V+ + +F R AVQ+ KQ++IQKVREAE Sbjct: 69 VDADDLLDPNEEISLEDAKEIKKRVKIGDVLKFEVSCDNFRRNAVQNGKQIVIQKVREAE 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R G+R+K + Sbjct: 129 REHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYRVGERIKVF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRAK+AV+S Sbjct: 189 VYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRAKVAVYSQV 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ V + ED Sbjct: 249 PNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVSSVEILED- 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEED 347 G +V+V QLSLAIG+ GQN RLA++LTG +DI + +EED Sbjct: 308 GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEED 351 >gi|257055490|ref|YP_003133322.1| transcription elongation factor NusA [Saccharomonospora viridis DSM 43017] gi|256585362|gb|ACU96495.1| transcription termination factor NusA [Saccharomonospora viridis DSM 43017] Length = 348 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/347 (39%), Positives = 202/347 (58%), Gaps = 27/347 (7%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I + VL + ++ A + G R++I+ +TG + + Sbjct: 10 AIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRVI----------A 59 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 YT + +V + D + P FGR+A +A+QVI+Q++R+AE ++ Y EF Sbjct: 60 YTLDENGEVVEEWDDT------------PEGFGRIAAATARQVILQRLRDAEHEKTYGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 + GEI++G V+R N VIV +G+++GV+ E + E G R+K+Y+ V Sbjct: 108 SAQEGEIVAGVVQRDAKANARGMVIVQVGDTEGVLPPAEQVPGEVYEHGARLKAYVVGVS 167 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ ++ Sbjct: 168 RTARGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTVPGVNA 227 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G+RV+ V++EL EKIDI+ S D A FV NAL PA V V V+DE Sbjct: 228 KGACIGHVGARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDERTKTAR 287 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Q+ + Sbjct: 288 VIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPEPGEQQHMD 334 >gi|146299389|ref|YP_001193980.1| transcription elongation factor NusA [Flavobacterium johnsoniae UW101] gi|146153807|gb|ABQ04661.1| NusA antitermination factor [Flavobacterium johnsoniae UW101] Length = 417 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 124/328 (37%), Positives = 203/328 (61%), Gaps = 3/328 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K IDR +++++ D + A + YG+ + + INP+ GD+ ++R +V E+++ Sbjct: 17 KLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIWRRRVIVADEDLDFENE 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L AR + +IG VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 77 EITLTEARMIEADFEIGEEVSEEVKLIDLGRRAILALRQNLISKIHEHDNTNLYKQFKDI 136 Query: 138 VGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G+I + V V VI VD ++ V+ +++ I + R GD V+ I V + P Sbjct: 137 IGDIYTAEVHHVRPRVVILVDDEGNEIVLPKEKQIPSDFFRKGDNVRGIIESVELKGNKP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 Q+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGACVG Sbjct: 197 QIIMSRTSEKFLEKLFEQEIPEVFDGLITVKNVVRIPGEKAKVAVDSYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ R EV + E+ Sbjct: 257 MKGSRIHGIVRELGNENIDVINYTNNIQLFITRALSPAKVSSIKIDEESKRAEVFLKLEE 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 +S AIGR G N++LA QLTG+ +D+I E Sbjct: 317 VSKAIGRGGHNIKLAGQLTGYELDVIRE 344 >gi|296269042|ref|YP_003651674.1| NusA antitermination factor [Thermobispora bispora DSM 43833] gi|296091829|gb|ADG87781.1| NusA antitermination factor [Thermobispora bispora DSM 43833] Length = 333 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 134/342 (39%), Positives = 202/342 (59%), Gaps = 24/342 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+V+ + D++ A G R E++ ETG ++++ E EN Sbjct: 14 EKDISFDLVVKAIEDALLIAYHRTEGAAPKARAELDRETGHVTIW----AAELDENG--- 66 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +V R+ D + P +F R+A +AKQVI+Q++R+AE + + EF + Sbjct: 67 ---EVIREYDDT------------PSNFSRIAATTAKQVILQQLRDAEDEINFGEFASRE 111 Query: 139 GEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 GE++SG +++ V+ VDLG + ++ +E + E R GDR++ Y+ V++ +GP Sbjct: 112 GELVSGVIQQGRDSRVVHVDLGKIEAILPPNEQVPGEEYRHGDRIRCYVVQVKKGPKGPS 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S ++ GAC+G Sbjct: 172 VTLSRTHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGVNAKGACIGP 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 GSRV+ V+ EL EKIDI+ WS D A FV NAL PA V++V V+D + V VP Q Sbjct: 232 MGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPARVSRVEVVDRENRVARVTVPDYQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 LSLAIG+ GQN RLA++LTGW IDI + +++ D + R Sbjct: 292 LSLAIGKEGQNARLAARLTGWRIDIRPDTQEAPADPADVSAR 333 >gi|313676538|ref|YP_004054534.1| nusa antitermination factor [Marivirga tractuosa DSM 4126] gi|312943236|gb|ADR22426.1| NusA antitermination factor [Marivirga tractuosa DSM 4126] Length = 413 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 219/347 (63%), Gaps = 6/347 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L L++ A +K+IDR ++ ++ D + R Y T + + IN + GD+ ++R Sbjct: 4 LNLIESFADFARQKNIDRPTMIRILEDVFKTMIRKKYETDDNFDIIINADKGDLEIWRFR 63 Query: 67 EVV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 E+V E++ ++ +ISL AR +P +IG V++ + FGR AV +A+Q +IQKV Sbjct: 64 EIVDDNSEDIWDHD-KISLTEARKIEPDFEIGEEVAEEVELEHFGRRAVTTARQTLIQKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ E+D + ++ + VGEII+G V ++ ++ D ++ V+ + E I ++ R GD Sbjct: 123 KDLEKDILFNKYSELVGEIIAGEVYQILSRETLLTDADGNELVLLKSEQIPKDRFRKGDS 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ ++ V + P+++LSRT P F+ +LF EVPE+Y+ ++ +K + R+PG RAK++V Sbjct: 183 VRAVVHRVEMQNGNPKIILSRTSPVFLERLFEQEVPEVYDELITIKKIVREPGERAKVSV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + + Sbjct: 243 ESYDDRIDPVGACVGMKGSRIHSIVRELQNENIDVINYTENMELYIQRALSPAKLSSMKI 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 D + R+ V + +Q+SLAIG+ GQN++LAS+L G ID+ E D+ Sbjct: 303 DVENKRVSVYLKPDQVSLAIGKGGQNIKLASKLVGMEIDVFRELTDA 349 >gi|291298941|ref|YP_003510219.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290568161|gb|ADD41126.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 347 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 138/328 (42%), Positives = 197/328 (60%), Gaps = 31/328 (9%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +RD+ + D+I+ A + Y S RVE+N ETG +++ R EV E Sbjct: 14 ERDIPFHTIIDAIESALLTAYRHTPDAQSHARVEVNRETGTVTV-RAREVDAE------- 65 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 V R+ D + P DFGR+A +AKQVI+Q++REA D + EF Sbjct: 66 --GNVVREWDDT------------PDDFGRIAAMTAKQVIMQRLREATDDVNFGEFASLE 111 Query: 139 GEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 G++++G ++ E G V+VDLG + ++ E + EN G R+++ + V R R Sbjct: 112 GDVVTGVIQAHEGASEKGTVMVDLGKIEAMLPHVEQVPGENYSHGRRLRAAVVQVSRGPR 171 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GPQ+ +SR+HP + KLF EVPEI +G+V++ AV+R+ G R K+AV ++ + ++ GAC Sbjct: 172 GPQITVSRSHPNLVKKLFAAEVPEIADGLVEIAAVAREAGHRTKIAVRATVADLNAKGAC 231 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G GSRV+AV++EL EKIDI+ +S D ATFV NAL P+ V V VLD D V+VP Sbjct: 232 IGPMGSRVRAVMSELDGEKIDIIDYSEDPATFVGNALSPSKVVSVEVLDPDDKVARVVVP 291 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 QLSLAIGR GQN RLA++LTGW IDI Sbjct: 292 DFQLSLAIGREGQNARLAARLTGWRIDI 319 >gi|237742964|ref|ZP_04573445.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13] gi|256846936|ref|ZP_05552390.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2] gi|229430612|gb|EEO40824.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13] gi|256717734|gb|EEU31293.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2] Length = 357 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 132/342 (38%), Positives = 212/342 (61%), Gaps = 7/342 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S N LE L D + EK I ++ VL + ++ A + YG ++ V ++ GDI + Sbjct: 6 SKNFLEAL---DELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDIKV 62 Query: 63 FRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++IQ Sbjct: 63 FASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIVIQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R G Sbjct: 123 KVREAEREHIFNKFKEREDNIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSLSDVYRVG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRAK+ Sbjct: 183 ERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ V Sbjct: 243 AVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVSNV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + ED G V+V QLSLAIG+ GQN RLA++LTG +DI Sbjct: 303 TILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDI 343 >gi|257452235|ref|ZP_05617534.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] gi|317058778|ref|ZP_07923263.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] gi|313684454|gb|EFS21289.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] Length = 353 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/344 (37%), Positives = 210/344 (61%), Gaps = 3/344 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60 Query: 61 SLFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + +VV E + Y +ISL+ A+ +G V + F R A+Q+ KQ++ Sbjct: 61 KVYEVKKVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R+ E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344 >gi|269215361|ref|ZP_06159215.1| transcription termination factor NusA [Slackia exigua ATCC 700122] gi|269131217|gb|EEZ62291.1| transcription termination factor NusA [Slackia exigua ATCC 700122] Length = 395 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 137/351 (39%), Positives = 207/351 (58%), Gaps = 42/351 (11%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+A+E+ ID ++ + S+ K+ +++ + RV I+ TG I ++ L+ V E Sbjct: 6 ALAHERKIDEFYLIERLEASLAKSYQNILDLEWEARVTIDRSTGRIYVYELVPVGEP--- 62 Query: 75 YTCQISLKVARDRDPSI-DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 DP + + P + R A Q+AK VI VREA R Y E Sbjct: 63 -------------DPETGEYADFEEKDVTPANVSRTAAQNAKSVIAAIVREAGRQSIYEE 109 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGV--------IRR-----DETISRENLRPGD 180 F+D+V +I+ GTV + I+ + +GV ++R +E + E R Sbjct: 110 FRDRVDDIVGGTVLQTTPDFTIIKI--REGVEAELPHYDLKRFPDEQNEVPAGERYRHNQ 167 Query: 181 RVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 R+K+ I +VR EQ P +++SRTHP + +LF +EVPEIY+G+V++K+++ Sbjct: 168 RIKTVIIEVRDPRSMEPRARGEQTRPSIVVSRTHPSLIRRLFEIEVPEIYDGVVEIKSIA 227 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R+ G+R+K+AV S +S++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A +V NA Sbjct: 228 REAGARSKVAVASRESNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDPAKYVANA 287 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L PA VT+V +DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 LSPARVTRVTIDEDKQYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDI 338 >gi|260060676|ref|YP_003193756.1| transcription elongation factor NusA [Robiginitalea biformata HTCC2501] gi|88784806|gb|EAR15975.1| transcription elongation factor NusA [Robiginitalea biformata HTCC2501] Length = 410 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 210/347 (60%), Gaps = 7/347 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L L++ +K IDR +++++ + + A + +G+ + + INP+ GD+ ++R Sbjct: 4 LALIESFSEFKDDKFIDRVTLMAILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIWRNR 63 Query: 67 EVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV EVE +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K+ E Sbjct: 64 VVVPDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLIAKIHE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRV 182 + Y +FKD GEI + V + + +I+ D GN + ++ +++ I + R GD V Sbjct: 124 HDNTTIYKQFKDLEGEIYTAEVHHIRHKAIILLDDEGN-ELIMPKEKQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P+F+ +LFH E+PE+++G++ +K R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPLIIMSRTSPKFLEQLFHQEIPEVFDGLITIKKAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V +L PA VT+V L+ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLMVTRSLSPARVTQVKLN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 ++ +V + E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 303 DENMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEED 349 >gi|146319503|ref|YP_001199215.1| transcription elongation factor NusA [Streptococcus suis 05ZYH33] gi|146321698|ref|YP_001201409.1| transcription elongation factor NusA [Streptococcus suis 98HAH33] gi|223934079|ref|ZP_03626028.1| NusA antitermination factor [Streptococcus suis 89/1591] gi|253752514|ref|YP_003025655.1| N utilization substance protein A [Streptococcus suis SC84] gi|253754340|ref|YP_003027481.1| N utilization substance protein A [Streptococcus suis P1/7] gi|253756274|ref|YP_003029414.1| N utilization substance protein A [Streptococcus suis BM407] gi|302024448|ref|ZP_07249659.1| transcription elongation factor NusA [Streptococcus suis 05HAS68] gi|145690309|gb|ABP90815.1| Transcription elongation factor [Streptococcus suis 05ZYH33] gi|145692504|gb|ABP93009.1| Transcription elongation factor [Streptococcus suis 98HAH33] gi|223897249|gb|EEF63661.1| NusA antitermination factor [Streptococcus suis 89/1591] gi|251816803|emb|CAZ52446.1| putative N utilization substance protein A [Streptococcus suis SC84] gi|251818738|emb|CAZ56574.1| putative N utilization substance protein A [Streptococcus suis BM407] gi|251820586|emb|CAR47342.1| putative N utilization substance protein A [Streptococcus suis P1/7] gi|292559121|gb|ADE32122.1| transcription termination factor NusA [Streptococcus suis GZ1] gi|319758923|gb|ADV70865.1| transcription elongation factor NusA [Streptococcus suis JS14] Length = 380 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 206/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + + I++ ++ + +S++ A + YG +E + + GD +F + E Sbjct: 4 EMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSESAVIEFDEKKGDFHVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ +R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQKR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y+Y Sbjct: 124 AITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ +E ID++ W D A F+ NAL P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNALAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASE 357 >gi|237739230|ref|ZP_04569711.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31] gi|229422838|gb|EEO37885.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31] Length = 353 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 129/343 (37%), Positives = 217/343 (63%), Gaps = 5/343 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I + V Sbjct: 9 FLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEIKVLASKTV 68 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++IQKVREAE Sbjct: 69 VDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIVIQKVREAE 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R G+R+K + Sbjct: 129 REHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYRVGERIKVF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRAK+AV+S Sbjct: 189 VYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRAKVAVYSEV 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ V + ED Sbjct: 249 PNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVSSVEILED- 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-ITEEED 347 G +V+V QLSLAIG+ GQN RLA++LTG +DI + E+ED Sbjct: 308 GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKED 350 >gi|225011158|ref|ZP_03701620.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C] gi|225004720|gb|EEG42680.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C] Length = 410 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 205/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYT 76 +K IDR +++++ + + A + +G+ + + INP+ GD+ ++R VVE+++ + Sbjct: 16 DKFIDRVTLMAILEEVFRSALKKKFGSDDNFDIIINPDKGDLEIWRNRVVVEDIDVMDPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +IS+ AR +P ++G VS+ + +D GR A+ + +Q +I K+ E + Y +FKD Sbjct: 76 EEISITEARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAKIHEHDNTTIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GEI + V + + +I+ D GN + ++ +D+ I + R GD V+ I V + Sbjct: 136 LEGEIYTAEVHHIRHQAIILLDDEGN-EIILPKDKQIPADFFRKGDNVRGIIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ +LF E+PE+++G++ +K R PG +AK+AV S D IDPVGAC Sbjct: 195 KPSIIMSRTSPLFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V LD++ +V + Sbjct: 255 VGMKGSRIHGIVKELGNENIDVINWTNNPTLLVTRALSPARVSSVKLDDEKMTAQVYLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEED 349 >gi|312134896|ref|YP_004002234.1| transcription termination factor nusa [Caldicellulosiruptor owensensis OL] gi|311774947|gb|ADQ04434.1| transcription termination factor NusA [Caldicellulosiruptor owensensis OL] Length = 353 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 202/341 (59%), Gaps = 9/341 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLF 63 EL D + E I++D V SV+ ++ A + + G +S+++V I+PE G + ++ Sbjct: 12 ELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSVKIY 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V++ +I L+ A+ D IG +V+ +P F R A + +Q +I K+R Sbjct: 72 EYKKVVENVKDKKSEILLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTVIGKIR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 E R + ++ KV I++G ++R++ NVIV++ G + ++ +E I E +PG Sbjct: 132 EKRRSIIFEDYSSKVDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKPGVM 191 Query: 182 VKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K YI +V+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR+K+ Sbjct: 192 MKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSRSKV 251 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V + Sbjct: 252 AVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEVVHI 311 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 L+ + V+VP QLSLAIGR G R A T W D Sbjct: 312 DLNLIEKKAFVLVPNSQLSLAIGRGGTE-RSACSKTDWLED 351 >gi|157151698|ref|YP_001449859.1| transcription elongation factor NusA [Streptococcus gordonii str. Challis substr. CH1] gi|157076492|gb|ABV11175.1| transcription termination factor NusA [Streptococcus gordonii str. Challis substr. CH1] Length = 413 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 207/354 (58%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + E Sbjct: 4 EMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P++FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPVEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEIFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFNAEDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|302537260|ref|ZP_07289602.1| transcription termination factor NusA [Streptomyces sp. C] gi|302446155|gb|EFL17971.1| transcription termination factor NusA [Streptomyces sp. C] Length = 333 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 120/246 (48%), Positives = 166/246 (67%), Gaps = 2/246 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +AKQVI+Q++R+AE D + EF + G++I+G V++ + NV+VD+G Sbjct: 79 PSDFGRIAATTAKQVILQRLRDAEDDLTFGEFAGREGDVITGVVQQGKDPKNVLVDIGKL 138 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+K+Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 139 EAILPVQEQVPGEEYTHGLRLKTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 198 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++P GAC+G G+RV+ V+ EL EKIDIV WS Sbjct: 199 GSVEISAIAREAGHRTKIAVRSTRSGLNPKGACIGPMGARVRNVMAELHGEKIDIVDWSD 258 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 259 DPAEMVANALSPARVSKVEVVDWDTRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 318 Query: 341 IITEEE 346 I + E Sbjct: 319 IRPDTE 324 >gi|314923905|gb|EFS87736.1| transcription termination factor NusA [Propionibacterium acnes HL001PA1] gi|314966035|gb|EFT10134.1| transcription termination factor NusA [Propionibacterium acnes HL082PA2] gi|315094983|gb|EFT66959.1| transcription termination factor NusA [Propionibacterium acnes HL060PA1] gi|315104208|gb|EFT76184.1| transcription termination factor NusA [Propionibacterium acnes HL050PA2] gi|327328082|gb|EGE69851.1| transcription termination factor NusA [Propionibacterium acnes HL103PA1] Length = 323 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 119/242 (49%), Positives = 164/242 (67%), Gaps = 3/242 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGN 160 P DFGRVA +A+QVI Q++REAE +++Y F G++I+G V++ + V VDLG+ Sbjct: 76 PEDFGRVAASTARQVIFQRLREAEDEQKYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGS 135 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 +G++ E + E G R++ Y+ VR+E RGPQV++SRTHP + KLF MEVPEI Sbjct: 136 LEGIMPPAEQVPGEKYSHGRRIRVYVVAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIE 195 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V++KA++R+ G R+K+AV S + + GAC+G G RV+AV+ EL +EKIDI+ WS Sbjct: 196 QGVVEIKALAREAGHRSKIAVVSHNPDVSAKGACIGPMGQRVRAVMHELDEEKIDIIDWS 255 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL P+ V+ V V+D IVP QLSLAIGR GQN RLA++LTGW I Sbjct: 256 GDPAEFVGAALSPSKVSSVTVIDSKAKTARAIVPDYQLSLAIGREGQNARLAARLTGWRI 315 Query: 340 DI 341 DI Sbjct: 316 DI 317 >gi|294784277|ref|ZP_06749572.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27] gi|294488143|gb|EFG35494.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27] Length = 357 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 132/342 (38%), Positives = 212/342 (61%), Gaps = 7/342 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S N LE L D + EK I ++ VL + ++ A + YG ++ V ++ GDI + Sbjct: 6 SKNFLEAL---DELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDIKV 62 Query: 63 FRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++IQ Sbjct: 63 FASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIVIQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R G Sbjct: 123 KVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPVEQSLSDVYRVG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRAK+ Sbjct: 183 ERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ V Sbjct: 243 AVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVSNV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + ED G V+V QLSLAIG+ GQN RLA++LTG +DI Sbjct: 303 TILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDI 343 >gi|262282171|ref|ZP_06059940.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA] gi|262262625|gb|EEY81322.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA] Length = 413 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 202/343 (58%), Gaps = 15/343 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I ++ ++ + +S++ A R YG ++ + + GD ++ + EVV+EV + + Sbjct: 15 DKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTVREVVDEVFDSRLE 74 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ Sbjct: 75 ISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRTITYNTYKEHE 134 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y V RG V Sbjct: 135 NEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVYKVEDNPRGVNV 194 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG Sbjct: 195 FVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRG 254 Query: 259 GSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLD-E 303 G+ ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ + E Sbjct: 255 GANIKKITSKFHPAKYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAPAEVDQVIFNAE 314 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 315 DNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE 357 >gi|50842972|ref|YP_056199.1| transcription elongation factor NusA [Propionibacterium acnes KPA171202] gi|289426473|ref|ZP_06428216.1| transcription termination factor NusA [Propionibacterium acnes SK187] gi|289428703|ref|ZP_06430386.1| transcription termination factor NusA [Propionibacterium acnes J165] gi|295131043|ref|YP_003581706.1| transcription termination factor NusA [Propionibacterium acnes SK137] gi|50840574|gb|AAT83241.1| transcriptional termination/antitermination factor [Propionibacterium acnes KPA171202] gi|289153201|gb|EFD01919.1| transcription termination factor NusA [Propionibacterium acnes SK187] gi|289158101|gb|EFD06321.1| transcription termination factor NusA [Propionibacterium acnes J165] gi|291377248|gb|ADE01103.1| transcription termination factor NusA [Propionibacterium acnes SK137] gi|313763591|gb|EFS34955.1| transcription termination factor NusA [Propionibacterium acnes HL013PA1] gi|313773529|gb|EFS39495.1| transcription termination factor NusA [Propionibacterium acnes HL074PA1] gi|313793985|gb|EFS42009.1| transcription termination factor NusA [Propionibacterium acnes HL110PA1] gi|313801372|gb|EFS42623.1| transcription termination factor NusA [Propionibacterium acnes HL110PA2] gi|313807949|gb|EFS46430.1| transcription termination factor NusA [Propionibacterium acnes HL087PA2] gi|313811582|gb|EFS49296.1| transcription termination factor NusA [Propionibacterium acnes HL083PA1] gi|313813358|gb|EFS51072.1| transcription termination factor NusA [Propionibacterium acnes HL025PA1] gi|313816771|gb|EFS54485.1| transcription termination factor NusA [Propionibacterium acnes HL059PA1] gi|313819518|gb|EFS57232.1| transcription termination factor NusA [Propionibacterium acnes HL046PA2] gi|313822158|gb|EFS59872.1| transcription termination factor NusA [Propionibacterium acnes HL036PA1] gi|313823608|gb|EFS61322.1| transcription termination factor NusA [Propionibacterium acnes HL036PA2] gi|313825931|gb|EFS63645.1| transcription termination factor NusA [Propionibacterium acnes HL063PA1] gi|313829611|gb|EFS67325.1| transcription termination factor NusA [Propionibacterium acnes HL063PA2] gi|313831322|gb|EFS69036.1| transcription termination factor NusA [Propionibacterium acnes HL007PA1] gi|313834932|gb|EFS72646.1| transcription termination factor NusA [Propionibacterium acnes HL056PA1] gi|313839907|gb|EFS77621.1| transcription termination factor NusA [Propionibacterium acnes HL086PA1] gi|314914745|gb|EFS78576.1| transcription termination factor NusA [Propionibacterium acnes HL005PA4] gi|314919293|gb|EFS83124.1| transcription termination factor NusA [Propionibacterium acnes HL050PA1] gi|314920797|gb|EFS84628.1| transcription termination factor NusA [Propionibacterium acnes HL050PA3] gi|314924649|gb|EFS88480.1| transcription termination factor NusA [Propionibacterium acnes HL036PA3] gi|314930476|gb|EFS94307.1| transcription termination factor NusA [Propionibacterium acnes HL067PA1] gi|314954366|gb|EFS98772.1| transcription termination factor NusA [Propionibacterium acnes HL027PA1] gi|314957448|gb|EFT01551.1| transcription termination factor NusA [Propionibacterium acnes HL002PA1] gi|314962084|gb|EFT06185.1| transcription termination factor NusA [Propionibacterium acnes HL002PA2] gi|314963663|gb|EFT07763.1| transcription termination factor NusA [Propionibacterium acnes HL082PA1] gi|314968509|gb|EFT12607.1| transcription termination factor NusA [Propionibacterium acnes HL037PA1] gi|314974197|gb|EFT18293.1| transcription termination factor NusA [Propionibacterium acnes HL053PA1] gi|314976694|gb|EFT20789.1| transcription termination factor NusA [Propionibacterium acnes HL045PA1] gi|314984332|gb|EFT28424.1| transcription termination factor NusA [Propionibacterium acnes HL005PA1] gi|314986521|gb|EFT30613.1| transcription termination factor NusA [Propionibacterium acnes HL005PA2] gi|314990880|gb|EFT34971.1| transcription termination factor NusA [Propionibacterium acnes HL005PA3] gi|315079513|gb|EFT51506.1| transcription termination factor NusA [Propionibacterium acnes HL053PA2] gi|315081257|gb|EFT53233.1| transcription termination factor NusA [Propionibacterium acnes HL078PA1] gi|315083455|gb|EFT55431.1| transcription termination factor NusA [Propionibacterium acnes HL027PA2] gi|315087141|gb|EFT59117.1| transcription termination factor NusA [Propionibacterium acnes HL002PA3] gi|315095336|gb|EFT67312.1| transcription termination factor NusA [Propionibacterium acnes HL038PA1] gi|315099219|gb|EFT71195.1| transcription termination factor NusA [Propionibacterium acnes HL059PA2] gi|315100430|gb|EFT72406.1| transcription termination factor NusA [Propionibacterium acnes HL046PA1] gi|315106776|gb|EFT78752.1| transcription termination factor NusA [Propionibacterium acnes HL030PA1] gi|315109017|gb|EFT80993.1| transcription termination factor NusA [Propionibacterium acnes HL030PA2] gi|327328401|gb|EGE70163.1| transcription termination factor NusA [Propionibacterium acnes HL096PA2] gi|327329733|gb|EGE71489.1| transcription termination factor NusA [Propionibacterium acnes HL096PA3] gi|327444188|gb|EGE90842.1| transcription termination factor NusA [Propionibacterium acnes HL043PA2] gi|327444933|gb|EGE91587.1| transcription termination factor NusA [Propionibacterium acnes HL043PA1] gi|327446418|gb|EGE93072.1| transcription termination factor NusA [Propionibacterium acnes HL013PA2] gi|327451993|gb|EGE98647.1| transcription termination factor NusA [Propionibacterium acnes HL092PA1] gi|327454970|gb|EGF01625.1| transcription termination factor NusA [Propionibacterium acnes HL087PA3] gi|327457744|gb|EGF04399.1| transcription termination factor NusA [Propionibacterium acnes HL083PA2] gi|328752173|gb|EGF65789.1| transcription termination factor NusA [Propionibacterium acnes HL020PA1] gi|328755195|gb|EGF68811.1| transcription termination factor NusA [Propionibacterium acnes HL087PA1] gi|328758325|gb|EGF71941.1| transcription termination factor NusA [Propionibacterium acnes HL025PA2] gi|328760059|gb|EGF73639.1| transcription termination factor NusA [Propionibacterium acnes HL099PA1] gi|332675923|gb|AEE72739.1| transcription elongation protein NusA [Propionibacterium acnes 266] Length = 323 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 119/242 (49%), Positives = 164/242 (67%), Gaps = 3/242 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGN 160 P DFGRVA +A+QVI Q++REAE +++Y F G++I+G V++ + V VDLG+ Sbjct: 76 PEDFGRVAASTARQVIFQRLREAEDEQKYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGS 135 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 +G++ E + E G R++ Y+ VR+E RGPQV++SRTHP + KLF MEVPEI Sbjct: 136 LEGIMPPAEQVPGEKYSHGRRIRVYVVAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIE 195 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V++KA++R+ G R+K+AV S + + GAC+G G RV+AV+ EL +EKIDI+ WS Sbjct: 196 QGVVEIKALAREAGHRSKIAVVSHNPDVSAKGACIGPMGQRVRAVMHELDEEKIDIIDWS 255 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL P+ V+ V V+D IVP QLSLAIGR GQN RLA++LTGW I Sbjct: 256 EDPAEFVGAALSPSKVSSVTVIDPKAKTARAIVPDYQLSLAIGREGQNARLAARLTGWRI 315 Query: 340 DI 341 DI Sbjct: 316 DI 317 >gi|282854640|ref|ZP_06263975.1| transcription termination factor NusA [Propionibacterium acnes J139] gi|282582222|gb|EFB87604.1| transcription termination factor NusA [Propionibacterium acnes J139] gi|314981920|gb|EFT26013.1| transcription termination factor NusA [Propionibacterium acnes HL110PA3] gi|315090735|gb|EFT62711.1| transcription termination factor NusA [Propionibacterium acnes HL110PA4] Length = 323 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 119/242 (49%), Positives = 164/242 (67%), Gaps = 3/242 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGN 160 P DFGRVA +A+QVI Q++REAE +++Y F G++I+G V++ + V VDLG+ Sbjct: 76 PEDFGRVAASTARQVIFQRLREAEDEQKYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGS 135 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 +G++ E + E G R++ Y+ VR+E RGPQV++SRTHP + KLF MEVPEI Sbjct: 136 LEGIMPPAEQVPGEKYSHGRRIRVYVVAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIE 195 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V++KA++R+ G R+K+AV S + + GAC+G G RV+AV+ EL +EKIDI+ WS Sbjct: 196 QGVVEIKALAREAGHRSKIAVVSHNPDVSAKGACIGPMGQRVRAVMHELDEEKIDIIDWS 255 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL P+ V+ V V+D IVP QLSLAIGR GQN RLA++LTGW I Sbjct: 256 GDPAEFVGAALSPSKVSSVTVIDPKAKTARAIVPDYQLSLAIGREGQNARLAARLTGWRI 315 Query: 340 DI 341 DI Sbjct: 316 DI 317 >gi|237743254|ref|ZP_04573735.1| transcription elongation factor NusA [Fusobacterium sp. 7_1] gi|256028609|ref|ZP_05442443.1| transcription elongation factor NusA [Fusobacterium sp. D11] gi|260495123|ref|ZP_05815252.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33] gi|289766527|ref|ZP_06525905.1| transcription elongation factor NusA [Fusobacterium sp. D11] gi|229433033|gb|EEO43245.1| transcription elongation factor NusA [Fusobacterium sp. 7_1] gi|260197566|gb|EEW95084.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33] gi|289718082|gb|EFD82094.1| transcription elongation factor NusA [Fusobacterium sp. D11] Length = 359 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 213/342 (62%), Gaps = 7/342 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S N LE L D + EK I ++ VL + ++ A + YG ++ V ++ E GDI + Sbjct: 6 SKNFLEAL---DELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVTVDRENGDIKV 62 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 F VV +++ + +ISL+ A+ + IG ++ + +F R AVQ+ KQ++IQ Sbjct: 63 FASKTVVAADDLLDPNEEISLEDAKKIKKRVKIGDILKFEVDCENFRRNAVQNGKQIVIQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R G Sbjct: 123 KVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGVELILPPAEQSVSDIYRVG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRAK+ Sbjct: 183 ERIKVYVLSVEKTSKFPKILISRRNEGLLRKLFEIEIPEITSGIIEIKSVAREAGSRAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+ +ID +GAC+G +G+R++ +V EL E+IDIV W P FV L PA+V V Sbjct: 243 AVYSAVPNIDTIGACIGQKGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVESV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + ED G V+V QLSLAIG+ GQN RLA++LTG +DI Sbjct: 303 TILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDI 343 >gi|330833473|ref|YP_004402298.1| transcription elongation factor NusA [Streptococcus suis ST3] gi|329307696|gb|AEB82112.1| transcription elongation factor NusA [Streptococcus suis ST3] Length = 380 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 205/354 (57%), Gaps = 15/354 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + + I++ ++ + +S+ A + YG +E + + GD +F + E Sbjct: 4 EMLEAFRILEEDMGINKADIIDAVTESLCSAYKRRYGQSESAVIEFDEKKGDFHVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ +R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQKR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y+Y Sbjct: 124 AITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ +E ID++ W D A F+ NAL P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNALAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 A V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASE 357 >gi|116490510|ref|YP_810054.1| transcription elongation factor [Oenococcus oeni PSU-1] gi|290889910|ref|ZP_06552997.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429] gi|116091235|gb|ABJ56389.1| Transcription elongation factor [Oenococcus oeni PSU-1] gi|290480520|gb|EFD89157.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429] Length = 473 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/350 (37%), Positives = 209/350 (59%), Gaps = 7/350 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE + Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 +L ++ EV+ + ++ Y+ +I LK AR+ + + + G + + P DFGR+A QS K Sbjct: 61 NLLQIKEVIPDGDMIDPYS-EIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNK 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENL 176 Q +RE E++ + ++ EI+S V R + + V + + + + + I E Sbjct: 120 STQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETY 179 Query: 177 RPGDRVKSYIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 + GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G Sbjct: 180 KTGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGD 239 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV ++DS++DP+G VG RGSRVQAVV EL E +DIV W D A ++ NAL PA Sbjct: 240 RSKVAVRTTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAE 299 Query: 296 VTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E Sbjct: 300 VVDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSE 349 >gi|326333613|ref|ZP_08199851.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] gi|325948594|gb|EGD40696.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] Length = 325 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/333 (38%), Positives = 201/333 (60%), Gaps = 28/333 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +R++ L V+ ++I++ + Y G + RV+++ +TG + + Sbjct: 14 EREISLDVLVEAIEQGLLTAYHKTEGAQTKARVDLDRKTGHVRVL--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 A + D ++ G D P FGR+A +AKQ+++Q++R+AE D ++ EF K Sbjct: 59 -----ASEVDDEGNVVGEYDD--TPEGFGRIAATTAKQIVLQRLRDAEDDVKFGEFSGKE 111 Query: 139 GEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I+SG +++ +V+VDLG +GVI E + E+ G R+K+ + VR+ RGPQ Sbjct: 112 GDILSGVIQQGRNPDDVLVDLGRLEGVIPLSERVPGEDYGHGTRIKALVVSVRKGMRGPQ 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSR+HP + KLF EVPEI +G V++ A++R+ G R K+AV S+ ++ GAC+G Sbjct: 172 ITLSRSHPNLVKKLFSFEVPEIADGTVEIAAIAREAGHRTKIAVKSTVPGVNAKGACIGP 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V++EL+ EKIDIV WS D V +AL PA V+ V ++DE V+VP Q Sbjct: 232 MGQRVRQVMSELQGEKIDIVDWSEDPKVLVASALSPARVSSVEIIDEATKSARVVVPDYQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 LSLAIG+ GQN RLA++LTGW IDI ++EE + Sbjct: 292 LSLAIGKEGQNARLAARLTGWRIDIRSDEETPV 324 >gi|313205355|ref|YP_004044012.1| nusa antitermination factor [Paludibacter propionicigenes WB4] gi|312444671|gb|ADQ81027.1| NusA antitermination factor [Paludibacter propionicigenes WB4] Length = 421 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 208/333 (62%), Gaps = 4/333 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 KSIDR ++SVM +S + L+GT + V INP+ GD ++R VV E++ + Sbjct: 20 KSIDRSTLISVMEESFRNVISKLFGTDENYDVIINPDKGDFEIYRNRTVVADEDLTDPNL 79 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL A+ D +I V+D + + FGR A+ + +Q + K+ E ++D + ++ +K Sbjct: 80 QISLTEAKKIDEDYEIDEDVTDTVDFLSFGRRAILTLRQTLSSKILELQKDNVFSKYSEK 139 Query: 138 VGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I+S + ++ + +++D ++ + + E I + R GD V++ + V + P Sbjct: 140 VGQIVSAELYQIWKKEMLLIDDEGNELYLPKTEQIPTDFYRKGDTVRAVVAMVENKNNNP 199 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSR P F+ +LF +EVPEI+ G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 200 KIILSRISPVFLERLFELEVPEIHEGLITIKKIARIPGERAKVAVESYDDRIDPVGACVG 259 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E + E+ + E+ Sbjct: 260 VKGSRIHGIVRELRNENIDVINYTNNVNLFISRALSPAKISSIRLNEAEKKAEIYLKPEE 319 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE-EEDS 348 +S AIG+ G N++LA L+G+T+D+ E +ED+ Sbjct: 320 VSQAIGKGGLNIKLAGMLSGYTLDVFREMDEDT 352 >gi|269956009|ref|YP_003325798.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269304690|gb|ACZ30240.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 344 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 136/334 (40%), Positives = 201/334 (60%), Gaps = 27/334 (8%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRLLEVVEEVENYTCQ 78 +RD+ L V+ ++I+ A Y D RVE++ TG ++++ E Sbjct: 14 ERDLSLDVLVEAIESALLHAYHRTPDAYAKARVEVDRRTGHVTVWAREEF---------- 63 Query: 79 ISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 R DPS G + + P P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 64 ------RTPDPSDPEGRPLVELGPEFDHTPQDFGRIATATARQVIVQRLRDAEDDQVLGL 117 Query: 134 FKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 F+ K GE+I+G +++ V+ VD+G ++ V+ E + E G+R+++Y+ +V R Sbjct: 118 FRGKEGEVIAGVIQQGRDPRVVLVDVGGTEAVLPPHEQVPTEEYVHGERLRAYVVEVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +G QV LSRTHP + KLF +EVPE+ +G V++ A++R+ G R+K+AV S ++ G Sbjct: 178 AKGAQVTLSRTHPGLVRKLFELEVPEVADGSVEITAIAREAGHRSKVAVRSRVQGLNAKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 AC+G G+RV+AV+ EL EKIDIV S D A FV NAL PA VT V V+DED + Sbjct: 238 ACIGPMGARVRAVMAELHGEKIDIVDHSDDPARFVANALSPARVTSVTVVDEDARAARAV 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 298 VPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDE 331 >gi|319953582|ref|YP_004164849.1| nusa antitermination factor [Cellulophaga algicola DSM 14237] gi|319422242|gb|ADV49351.1| NusA antitermination factor [Cellulophaga algicola DSM 14237] Length = 410 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 201/335 (60%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + +G+ + + INP+ GD+ ++R VVE EVE Sbjct: 16 DKFIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIWRNRIVVEDGEVEEPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + + GR A+ + +Q +I K+ E + Y FKD Sbjct: 76 EEISLSEARKIEPDFEVGEDVSEEVKLIQLGRRAILALRQNLISKIHEHDNTTIYKHFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 G + + V + + VI+ D GN + ++ +D+ I + R GD V+ I V + Sbjct: 136 LEGGLYTAEVHHIRHKVVILLDDEGN-ELILPKDKQIPSDFFRKGDNVRGIIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ LF E+PE+++G++ VK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPVIVMSRTAPAFLEALFFQEIPEVFDGLITVKKVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V LD++ +V + Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINWTSNPQLLVTRALSPARVSSVKLDDEKMTAQVYLRP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEED 349 >gi|118587523|ref|ZP_01544947.1| transcription termination protein NusA [Oenococcus oeni ATCC BAA-1163] gi|118431974|gb|EAV38716.1| transcription termination protein NusA [Oenococcus oeni ATCC BAA-1163] Length = 473 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/350 (37%), Positives = 209/350 (59%), Gaps = 7/350 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE + Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 +L ++ EV+ + ++ Y+ +I LK AR+ + + + G + + P DFGR+A QS K Sbjct: 61 NLLQIKEVIPDGDMIDPYS-EIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNK 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENL 176 Q +RE E++ + ++ EI+S V R + + V + + + + + I E Sbjct: 120 STQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETY 179 Query: 177 RPGDRVKSYIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 + GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G Sbjct: 180 KTGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGD 239 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV ++DS++DPVG VG RGSRVQAVV EL E +DIV W D A ++ NAL PA Sbjct: 240 RSKVAVRTTDSNLDPVGTLVGPRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAE 299 Query: 296 VTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E Sbjct: 300 VVDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSE 349 >gi|218459797|ref|ZP_03499888.1| transcription elongation factor NusA [Rhizobium etli Kim 5] Length = 262 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/216 (52%), Positives = 152/216 (70%), Gaps = 1/216 (0%) Query: 304 DVGRIEVIVPK-EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D RIEV V + Q L QNVRLASQLTGW IDI+TE E+S RQK+FNERT F Sbjct: 33 DARRIEVFVSRTRQRRLRSVAAAQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNLF 92 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++ Sbjct: 93 MDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLEA 152 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GW+E K G + Sbjct: 153 EMDEKRKALGVQDELREIDGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWTERKNGETK 212 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 KF+G S + + E MI+ AR GWI +E +A Sbjct: 213 KFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLA 248 >gi|254382096|ref|ZP_04997458.1| transcription elongation factor NusA [Streptomyces sp. Mg1] gi|194341003|gb|EDX21969.1| transcription elongation factor NusA [Streptomyces sp. Mg1] Length = 336 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/254 (47%), Positives = 170/254 (66%), Gaps = 2/254 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +AKQVI+Q++R+AE D + EF + G++I+G V++ + NV+VD+G Sbjct: 79 PSDFGRIAATTAKQVILQRLRDAEDDLTFGEFAGREGDVITGVVQQGKDPKNVLVDIGKL 138 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E+ G R+K+Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 139 EAILPVQEQVPGEDYTHGLRLKTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 198 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ + ++P GAC+G G+RV+ V+ EL EKIDIV WS Sbjct: 199 GSVEICAIAREAGHRTKIAVRSTRAGLNPKGACIGPMGARVRNVMAELHGEKIDIVDWSD 258 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 259 DPAEMVANALSPARVSKVEVVDWDTRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 318 Query: 341 IITEEEDSINRQKD 354 I + E + +D Sbjct: 319 IRPDTEPAEGADRD 332 >gi|76496362|gb|ABA43692.1| NusA [Spiroplasma kunkelii CR2-3x] Length = 483 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 205/339 (60%), Gaps = 1/339 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL D + EK I RD++L + + I+KA + + I VEI+ +TG I + + L V Sbjct: 19 LLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEKELTV 78 Query: 69 VEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V++VE+ +I L A+++ I I V + + +F R+A+ Q+I Q+++EAE+ Sbjct: 79 VKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIKEAEK 138 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + E+ + G +++G V E ++V++ + I R I E+ G + Sbjct: 139 DSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSEHFEVGQPITFLAE 198 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV + + Q++ SRT F+ L E+PEI+ +++VKA++RDPG R+K+AV+S++ + Sbjct: 199 DVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYSTNEN 258 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + +++ Sbjct: 259 IDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTNDEEKE 318 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V+VP EQLSLAIG+ G + +L ++LT W ++I++ E Sbjct: 319 ADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSE 357 >gi|228470366|ref|ZP_04055269.1| transcription termination factor NusA [Porphyromonas uenonis 60-3] gi|228307948|gb|EEK16831.1| transcription termination factor NusA [Porphyromonas uenonis 60-3] Length = 459 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 202/332 (60%), Gaps = 3/332 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYSEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V +V + ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGEMITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA V+ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTSNDSLFIQRALSPAKVSSIELYPETAKAEVYLQPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + LAIG+ N++LAS LTG+ I++ + D+ Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADT 352 >gi|163782301|ref|ZP_02177299.1| transcription elongation factor NusA [Hydrogenivirga sp. 128-5-R1-1] gi|159882334|gb|EDP75840.1| transcription elongation factor NusA [Hydrogenivirga sp. 128-5-R1-1] Length = 333 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/243 (44%), Positives = 169/243 (69%), Gaps = 1/243 (0%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDG 163 D R+A +AK+ + ++ AER+R +LE+K+ GE+++G V+++ + G+++VDLG + Sbjct: 77 DVNRIAAFAAKEEFLNELERAERERGFLEYKELEGEVVTGIVRKIYDNGDILVDLGKVEA 136 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 V+ R E I E GD+VK+ + +V++ P+++LSRTHP F+ +L E+PE+ + Sbjct: 137 VLPRREQIPGETYHVGDKVKALLLEVKKMHGEPRLILSRTHPLFLKRLLETEIPEVADKE 196 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 ++VK+V+R PG RAK+AV++ D +DPVG VG+RGSR+Q + EL EKID+V W+ D Sbjct: 197 IEVKSVARIPGERAKVAVYAKDMKMDPVGIVVGLRGSRIQPISDELHGEKIDVVRWTDDE 256 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ AL PA T + L + R EV VP++QLSLAIGRRG NV+LA +LTGW ID+++ Sbjct: 257 EEFIRRALSPAQPTAIRLIPEEERAEVAVPQDQLSLAIGRRGTNVKLAHRLTGWHIDVMS 316 Query: 344 EEE 346 EE+ Sbjct: 317 EED 319 >gi|262066535|ref|ZP_06026147.1| transcription termination factor NusA [Fusobacterium periodonticum ATCC 33693] gi|291379769|gb|EFE87287.1| transcription termination factor NusA [Fusobacterium periodonticum ATCC 33693] Length = 353 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 217/344 (63%), Gaps = 6/344 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I + V Sbjct: 9 FLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEIKVLASKTV 68 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++IQKVREAE Sbjct: 69 VDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIVIQKVREAE 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y +FK++ +I++G ++R++ N+ +++ + ++ E + R G+R+K + Sbjct: 129 REHIYEKFKERENDIVTGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYRVGERIKVF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRAK+AV+S Sbjct: 189 VYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRAKVAVYSQV 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ V + ED Sbjct: 249 PNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVSSVEILED- 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEED 347 G +V+V QLSLAIG+ GQN RLA++LTG +DI + +EED Sbjct: 308 GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEED 351 >gi|269219599|ref|ZP_06163453.1| transcription termination factor NusA [Actinomyces sp. oral taxon 848 str. F0332] gi|269210841|gb|EEZ77181.1| transcription termination factor NusA [Actinomyces sp. oral taxon 848 str. F0332] Length = 330 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/336 (40%), Positives = 199/336 (59%), Gaps = 26/336 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V E I DV++ + D++ A + + G + RVE++ TG ++++ EV EE E Sbjct: 11 VESELGISVDVIVGAIEDALLHAYQRVPGAVRGARVEMDRNTGKVTVY-APEVDEEGE-- 67 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 + G D P DFGR+A +A+ +I Q++R+AE DR FK Sbjct: 68 -----------------VIGEFDDT--PGDFGRIATSTARSIIAQRLRDAETDRVLGSFK 108 Query: 136 DKVGEIISGTVK---RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 K GE++SG V+ R + +++VD+G + ++R +E + E R GD +++ + +V Sbjct: 109 GKQGEVVSGVVQQNPRHDSRDLLVDVGEHEAILRVEEQVPTERFRHGDHIRALVLEVSVG 168 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RG V LSRTHP F KLF MEVPEI +G V++ A++R+ G RAK+AV+S ++ G Sbjct: 169 TRGASVRLSRTHPDFARKLFEMEVPEIQDGTVEIVALAREAGHRAKIAVWSDIPDVNAKG 228 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 AC+G G RV+AV TEL EKIDIV + D F+ +L PA V +V +LD+ + VI Sbjct: 229 ACIGHNGQRVRAVTTELGGEKIDIVDYDDDPKAFIAASLSPAKVVRVDILDKAERQARVI 288 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VP Q SLAIG+ QNVRLA++LTGW+IDI E +D Sbjct: 289 VPDGQTSLAIGKEAQNVRLAAKLTGWSIDIRKESDD 324 >gi|314978822|gb|EFT22916.1| transcription termination factor NusA [Propionibacterium acnes HL072PA2] gi|315089313|gb|EFT61289.1| transcription termination factor NusA [Propionibacterium acnes HL072PA1] Length = 323 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 119/242 (49%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGN 160 P DFGRVA +A+QVI Q++REAE +++Y F G++I+G V++ + V VDLG+ Sbjct: 76 PEDFGRVAASTARQVIFQRLREAEDEQKYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGS 135 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 +G++ E + E G R++ Y+ VR+E RGPQV++SRTHP + KLF MEVPEI Sbjct: 136 LEGIMPPAEQVPGEKYSHGRRIRVYVVAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIE 195 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V++KA+ R+ G R+K+AV S + + GAC+G G RV+AV+ EL +EKIDI+ WS Sbjct: 196 QGVVEIKALVREAGHRSKIAVVSHNPDVSAKGACIGPMGQRVRAVMHELDEEKIDIIDWS 255 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL P+ V+ V V+D IVP QLSLAIGR GQN RLA++LTGW I Sbjct: 256 EDPAEFVGAALSPSKVSSVTVIDPKAKTARAIVPDYQLSLAIGREGQNARLAARLTGWRI 315 Query: 340 DI 341 DI Sbjct: 316 DI 317 >gi|224531576|ref|ZP_03672208.1| transcription elongation protein NusA [Borrelia valaisiana VS116] gi|224511041|gb|EEF81447.1| transcription elongation protein NusA [Borrelia valaisiana VS116] Length = 482 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 125/391 (31%), Positives = 234/391 (59%), Gaps = 7/391 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ D + + +S+ A + +G+ + V+ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLIVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ K + D G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SFLEVLEKDISKENFVED--GYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGVIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + K +E Q ++ D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQ--FAKMKANSEFKQETLEMF--DKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F ++ +++ +K+ + + I +E Sbjct: 365 DVVEEEQFEEISKISDLKLLDPSVISNLSKE 395 >gi|227529106|ref|ZP_03959155.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC 49540] gi|227350950|gb|EEJ41241.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC 49540] Length = 410 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 210/381 (55%), Gaps = 48/381 (12%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL- 66 E++ D + EK I +++V+ + +++ A + YG ++ V+ + TG+I ++ + Sbjct: 9 EMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNYGE-KNVEVDFDGVTGNIKVYAVKT 67 Query: 67 -----EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++VEE +N ++ D+G + + + P DFGR+A Q+AKQV++Q+ Sbjct: 68 ITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVMQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 +RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ D Sbjct: 128 LREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHIHD 187 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V ++ GPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+A Sbjct: 188 RIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVA 247 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ Sbjct: 248 VYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLDVI 307 Query: 301 LDEDVGRI----------------------------------------EVIVPKEQLSLA 320 +E + V+VP QLSLA Sbjct: 308 FNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLSLA 367 Query: 321 IGRRGQNVRLASQLTGWTIDI 341 IG+RGQN RLA++LT + IDI Sbjct: 368 IGKRGQNARLAARLTKYKIDI 388 >gi|86140762|ref|ZP_01059321.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis MED217] gi|85832704|gb|EAQ51153.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis MED217] Length = 409 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 207/335 (61%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR ++++++ + + + +G+ + + INP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVMLMAILEEVFRSTLKKRFGSDDNFDIIINPDKGDLEIWRNRVVVADGEVEDEN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K+ E + Y +FKD Sbjct: 76 SEISLTEARRIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLISKIHEHDNTNIYKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GE+ + V + + +I+ D GN + ++ +D+ I + R G+ V+ I V + Sbjct: 136 LEGELYNAEVHHIRHRAIILLDDEGN-EIIMPKDKQIPSDFFRKGENVRGIIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKKVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + +D++ EV++ Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINFTNNLQLYITRALSPAKITSIKIDDENKTAEVMLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEED 349 >gi|327334250|gb|EGE75964.1| transcription termination factor NusA [Propionibacterium acnes HL097PA1] Length = 323 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 118/242 (48%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGN 160 P DFGRVA +A+QVI Q++REAE +++Y F G++I+G V++ + V VDLG+ Sbjct: 76 PEDFGRVAASTARQVIFQRLREAEDEQKYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGS 135 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 +G++ E + E G R++ Y+ VR+E RGPQV++SRTHP + KLF MEVPEI Sbjct: 136 LEGIMPPAEQVPGEKYSHGRRIRVYVVAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIE 195 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G+V++KA++R+ G R+K+AV S + + GAC+G G RV+AV+ EL +EKIDI+ WS Sbjct: 196 QGVVEIKALAREAGHRSKIAVVSHNPDVSAKGACIGPMGQRVRAVMHELDEEKIDIIDWS 255 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL P+ V+ V V+D IVP QLSL IGR GQN RLA++LTGW I Sbjct: 256 EDPAEFVGAALSPSKVSSVTVIDPKAKTARAIVPDYQLSLGIGREGQNARLAARLTGWRI 315 Query: 340 DI 341 DI Sbjct: 316 DI 317 >gi|256419698|ref|YP_003120351.1| transcription elongation factor NusA [Chitinophaga pinensis DSM 2588] gi|256034606|gb|ACU58150.1| NusA antitermination factor [Chitinophaga pinensis DSM 2588] Length = 415 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 117/330 (35%), Positives = 204/330 (61%), Gaps = 3/330 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 ++IDR ++ V+ D + R YG+ + V +N E GD+ + R +V EVE+ Sbjct: 17 ENIDRPTLMKVLEDVFKTLLRKKYGSDENFDVIVNTEKGDLEILRRRTIVTDGEVEDDNA 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+ A +P +G + + + +DFGR A+ +AKQ + ++ + +++ ++ D+ Sbjct: 77 QIAYSEAILVEPDYQVGEDLYEEVEILDFGRRAILAAKQTLSARIGDLKKNILVKKYADR 136 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGEI++G V +V V++ D ++ ++ + E I + + G+ V++ + V + P Sbjct: 137 VGEIVTGEVYQVWKKEVLLLDDERNELILPKSEQIPTDYFKKGENVRAVVKKVEMKNNAP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++LSRTHP F+ KL +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 197 LIILSRTHPTFLAKLLEIEVPEIFDGLIVIKKIVREPGERAKVAVESYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V ELR+E IDI+ ++ + + AL PA ++++ +D + V + +Q Sbjct: 257 MKGSRIHGIVRELRNENIDIINYTANIQLLIQRALTPARISRMEVDNENKYASVFLKADQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +SLAIG++G N++LA +LTG+ ID+ +EE Sbjct: 317 VSLAIGKKGVNIKLACELTGYEIDVFRDEE 346 >gi|262340805|ref|YP_003283660.1| transcription elongation factor NusA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272142|gb|ACY40050.1| transcription elongation factor NusA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 417 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 204/327 (62%), Gaps = 3/327 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++R VV+ EV++ Sbjct: 16 EKNIDRVSLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRNRIVVQDGEVKDIN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L +AR +P +IG V++ + GR A+ S +Q ++ K+ E + Y +FK+ Sbjct: 76 KEIELSIARKIEPDFEIGEEVTEKVELQSLGRRAILSLRQNLLSKINEYDNTNTYKKFKN 135 Query: 137 KVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+GEII+ V + +I+ D ++ V+ + E I + R GD V++ + V + Sbjct: 136 KIGEIINVEVYHILSKQIIMRDEEQNEMVLPKQEQIPSDFFRKGDPVRALVKRVDWKDNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P +L+R F+ +LF +E+PE+ +G++ VK V+R PG +AK+AV S D IDPVGACV Sbjct: 196 PFAILTRRDEAFLEELFKLEIPEVSDGLITVKKVARIPGEKAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ ++ ++ AL PA V+ + ++ED + V V E Sbjct: 256 GMKGSRIHPIVRELKNENIDVINYTSNTQLYITRALSPAKVSMMEVNEDHKYVNVYVKLE 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++S AIGR GQN+RLASQLTG+ I I Sbjct: 316 EISRAIGRGGQNIRLASQLTGYKIHIF 342 >gi|295426316|ref|ZP_06818975.1| transcription termination factor NusA [Lactobacillus amylolyticus DSM 11664] gi|295063989|gb|EFG54938.1| transcription termination factor NusA [Lactobacillus amylolyticus DSM 11664] Length = 401 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 216/354 (61%), Gaps = 5/354 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF--RL 65 E+L+ + +K I ++V++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLEEKKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + +++++ ++SL A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 64 VVDDDQLQDDRLEVSLSDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+I+GTV+R + V V +GN + V+ R + + E P D+++ Sbjct: 124 ERNHIVDEYSQYEDELITGTVERRDNRFVYVKIGNVEAVMPRSDQMPNETYNPQDKIRVL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S D Sbjct: 184 VTRVGSDSKGAQIVVSRTAPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKIAVKSID 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG RG+RVQ VV EL E IDIV + D + ++ NAL PA V V D+ Sbjct: 244 PNIDPVGTCVGQRGARVQNVVNELGGENIDIVRYEDDPSDYIANALSPAEVIAVQFGDDD 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFN 356 + VIVP QLSLAIG++GQ+VRLA++LTG+ I+I E E + ++ KD N Sbjct: 304 EEKSALVIVPDYQLSLAIGKKGQSVRLAARLTGYKINIRPESEVEFVDEDKDEN 357 >gi|254992770|ref|ZP_05274960.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-064] Length = 251 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 106/219 (48%), Positives = 155/219 (70%) Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y Sbjct: 1 ERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVY 60 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 61 LTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTAN 120 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 121 EEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEAD 180 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 181 QATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE 219 >gi|262037365|ref|ZP_06010830.1| transcription termination factor NusA [Leptotrichia goodfellowii F0264] gi|261748622|gb|EEY35996.1| transcription termination factor NusA [Leptotrichia goodfellowii F0264] Length = 365 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 204/348 (58%), Gaps = 7/348 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ++ L+ D + EK I ++ +L + ++ A + YG + + IN ETG++ Sbjct: 1 MKSKDQRVFLEALDELEKEKGIIKEELLEAVETALLAAYKKNYGDKDNAEISINRETGEV 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F +V+ VE +ISL+ A +GG + + +F R A+Q+AKQ+I+Q Sbjct: 61 KVFSRKTIVQTVEKPEEEISLEDAIALKKKSKLGGTIDFEINAENFKRNAIQNAKQIIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ + FK I+S V++ E GN+ +D+ + ++ E + G Sbjct: 121 KVRECEKKNIFNRFKQIEKSIVSAVVRKTDEKGNLYIDINGLEAIVPEKELSEADKFIQG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+K Y+ V + + LSR + M L ++E+PEI +G +Q+K ++R+ GSR K+ Sbjct: 181 DRLKVYVGAVEESTKYTKCFLSRKVEELMRGLLNLEIPEIEDGTIQIKQIAREAGSRTKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S D ++D GAC+G G R+Q+++ EL+ EK+D+V+W D FV NAL PA V V Sbjct: 241 AVYSDDPNLDVKGACIGKSGMRIQSIIDELKGEKVDVVLWDEDIRYFVKNALNPAEVISV 300 Query: 300 -VLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +++ED + R+EV +EQLSLAIG++GQN RLA++L G IDI T Sbjct: 301 EIIEEDGEQIARVEV--DEEQLSLAIGKKGQNSRLAARLCGIKIDIHT 346 >gi|29829095|ref|NP_823729.1| transcription elongation factor NusA [Streptomyces avermitilis MA-4680] gi|29606201|dbj|BAC70264.1| putative transcriptional termination/antitermination factor [Streptomyces avermitilis MA-4680] Length = 328 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 136/332 (40%), Positives = 199/332 (59%), Gaps = 21/332 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE+N ETG ++++ E E++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW-AKEDPEDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + AR+ D + P FGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QEAREFDDT------------PSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGLRLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D V VP Q Sbjct: 235 MGGRVRNVMAELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 LSLAIG+ GQN RLA++LTGW IDI + E S Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTEQS 326 >gi|332300247|ref|YP_004442168.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM 20707] gi|332177310|gb|AEE13000.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM 20707] Length = 469 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 202/332 (60%), Gaps = 3/332 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V +V + ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + LAIG+ N++LAS LTG+ I++ + D+ Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADT 352 >gi|313886723|ref|ZP_07820432.1| transcription termination factor NusA [Porphyromonas asaccharolytica PR426713P-I] gi|312923825|gb|EFR34625.1| transcription termination factor NusA [Porphyromonas asaccharolytica PR426713P-I] Length = 469 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 202/332 (60%), Gaps = 3/332 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V +V + ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + LAIG+ N++LAS LTG+ I++ + D+ Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADT 352 >gi|313836822|gb|EFS74536.1| transcription termination factor NusA [Propionibacterium acnes HL037PA2] gi|314929769|gb|EFS93600.1| transcription termination factor NusA [Propionibacterium acnes HL044PA1] gi|314972198|gb|EFT16295.1| transcription termination factor NusA [Propionibacterium acnes HL037PA3] gi|328907626|gb|EGG27390.1| transcription elongation factor NusA [Propionibacterium sp. P08] Length = 323 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 118/242 (48%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGN 160 P DFGRVA +A+QVI Q++REAE +++Y F G++++G V++ + V VDLG Sbjct: 76 PEDFGRVAASTARQVIFQRLREAEDEQKYGHFAAVEGDVVTGVVQQSYRDTRTVRVDLGT 135 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 +G++ E + E G R++ Y+ VR+E RGPQV++SRTHP + KLF MEVPEI Sbjct: 136 LEGIMPPSEQVPGEKYFHGRRIRVYVVAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIE 195 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 +V++KA++R+ G R+K+AV S +S + GAC+G G RV+AV+ EL +EKIDI+ WS Sbjct: 196 QEVVEIKALAREAGHRSKIAVVSHNSDVSAKGACIGPMGQRVRAVMHELGEEKIDIIDWS 255 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL P+ V+ V V+D IVP QLSLAIGR GQN RLA++LTGW I Sbjct: 256 EDPAEFVGAALSPSKVSSVTVIDPKAKTARAIVPDYQLSLAIGREGQNARLAARLTGWRI 315 Query: 340 DI 341 DI Sbjct: 316 DI 317 >gi|54026039|ref|YP_120281.1| transcription elongation factor NusA [Nocardia farcinica IFM 10152] gi|54017547|dbj|BAD58917.1| putative transcriptional termination/antitermination factor [Nocardia farcinica IFM 10152] Length = 342 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/337 (39%), Positives = 199/337 (59%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I + V+S + ++ A R G + RV+IN TG + + Sbjct: 10 AIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 AR+ D G V+S+ P FGR+A +A+QV++Q++R+AE ++ + E Sbjct: 59 ---------ARELDAD---GNVISEWDDTPEGFGRIAATTARQVVLQRLRDAENEKSFGE 106 Query: 134 FKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F G+I+ G V+R G V+V +G+ ++G+I E + E GDR+K Y Sbjct: 107 FSTHEGDIVGGVVQRDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYEHGDRIKCY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 167 VVGVSRGPRGPQITLSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRSKIAVRSTV 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDED 304 ++ GAC+G G RV+ V++EL EKIDI+ ++ D ATFV NAL P+ +V+ ++D D Sbjct: 227 PGVNAKGACIGPMGQRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVVSVTIVDPD 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|119717416|ref|YP_924381.1| transcription elongation factor NusA [Nocardioides sp. JS614] gi|119538077|gb|ABL82694.1| transcription termination factor NusA [Nocardioides sp. JS614] Length = 327 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 116/248 (46%), Positives = 167/248 (67%), Gaps = 2/248 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNS 161 P FGR+A +AKQ+++Q++R+AE D ++ EF K G+IISG +++ + V+VDLG Sbjct: 76 PAGFGRIAATTAKQIMLQRLRDAEDDVRFGEFSGKEGDIISGIIQQGRNPDDVMVDLGKL 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+K + VR+ RGPQ+ LSR+HP + KLF +EVPEI + Sbjct: 136 EALLPVGERVPGERYDHGTRIKCLVVSVRKGMRGPQITLSRSHPNLVKKLFALEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R KLAV S+ ++ GAC+G GSRV+AV++EL EKIDIV WS Sbjct: 196 GTVEIAAIAREAGHRTKLAVRSTVPGVNAKGACIGPMGSRVRAVMSELHGEKIDIVDWSE 255 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V +AL PA VT V ++D V+VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 DPAEMVAHALSPARVTSVEIVDAAAKSARVVVPDFQLSLAIGKEGQNARLAARLTGWRID 315 Query: 341 IITEEEDS 348 I ++E ++ Sbjct: 316 IRSDEAEA 323 >gi|110005298|emb|CAK99622.1| putative transcription termination factor protein [Spiroplasma citri] Length = 471 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 205/339 (60%), Gaps = 1/339 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL + + EK I RD++L + + I+KA + + + V+I+ +TG I + + L V Sbjct: 7 LLTTINEIVSEKQISRDLILDSIKEGIKKAYEKHFDPEATVFVDIDQKTGQIKVEKELTV 66 Query: 69 VEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V++VE+ +I L A+++ I I V +P+ +F R+A+ Q+I Q+++EAE+ Sbjct: 67 VKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEPVNSEEFSRLAIFQVGQIIKQQIKEAEK 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + E+ + G +++G V E ++V++ + I R I ++ G + Sbjct: 127 DSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSDHFEVGQPITFLAE 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV + + Q+ SRT F+ +L E+PEI+ +++VKA++RDPG R+K+AV+S++ + Sbjct: 187 DVIKSKNAGQITGSRTSNDFLYRLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYSTNEN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + +++ Sbjct: 247 IDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTNDEGKE 306 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP EQLSLAIG+ G +L ++LT W ++I++ E Sbjct: 307 ADVIVPDEQLSLAIGKGGSAAKLVAKLTKWKLNIMSYSE 345 >gi|225012171|ref|ZP_03702608.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A] gi|225003726|gb|EEG41699.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A] Length = 410 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 122/335 (36%), Positives = 204/335 (60%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYT 76 +K IDR ++ ++ D + + +G+ + + INP+ GD+ ++R VVE+ VE+ Sbjct: 16 DKLIDRVTLMVILEDVFKNTLKRKFGSDENFDIIINPDKGDLEIWRNRVVVEDGMVEDPN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I+LK AR +P ++G VS+ + +D GR +Q +Q ++ K+ E + + +FKD Sbjct: 76 QEIALKEARLIEPDFEVGEDVSEEVKLVDLGRRTIQYLRQNLVAKIFEHDSTTIFKQFKD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 + GE+ + V + +I+ D GN + ++ +D I + R GD ++ I V Sbjct: 136 REGELYTAEVHHIRSREIILLDDDGN-EIILPKDRQIPSDFFRKGDNIRGIIETVELRGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P+++LSRT P F+ KLF E+PE+++G++ +K R PG +AK+AV S D IDPVGAC Sbjct: 195 KPRIILSRTSPIFLEKLFEQEIPEVFDGLITIKKAVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V + ++E+ R+EV + Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTNNLQLFIARALSPAKVNSLKINEETKRVEVFLNP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIG+ G N+RLA +LTG+ ID+ E EED Sbjct: 315 EEVSKAIGKGGANIRLAGKLTGYEIDVFREGVEED 349 >gi|229820977|ref|YP_002882503.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333] gi|229566890|gb|ACQ80741.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333] Length = 346 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 200/325 (61%), Gaps = 26/325 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +R++ L V+ +I++A S Y G + RV ++ ++G +++ EVV E + Sbjct: 14 EREISLDVLVGAIEQALLSAYERTPGAYPEARVHLDRQSGHVTVL-ATEVVGEGDE---- 68 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +V R+ D + P FGR+A +A+QVIIQ++R+AE D+ F+ + Sbjct: 69 ---EVRREFDHT------------PEGFGRIATSTARQVIIQRLRDAEDDQVLGTFRGRE 113 Query: 139 GEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 GE+I+G V++ G V+VD+G + V+ E + E+ G+R+++Y+ DV R +GP Sbjct: 114 GELIAGVVQQGGRVGAVLVDVGGVEAVLPPHEQVPGESYPHGERIRAYVLDVSRGLKGPS 173 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSRTHP F+ ++F +EVPE+ +G V++ A++R+ G R K+AV S + GAC+G Sbjct: 174 ITLSRTHPNFVRRMFALEVPEVADGSVEIAALAREAGHRTKMAVRSLVPGVGAKGACIGP 233 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+AV+ ELR EKIDIV +S D A FV AL PA V+ V ++D + VIVP Q Sbjct: 234 MGQRVRAVMAELRGEKIDIVDFSEDPARFVAAALSPARVSSVQIVDAEARSARVIVPDYQ 293 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI 341 LSLAIG+ GQN RLA++LTGW IDI Sbjct: 294 LSLAIGKEGQNARLAARLTGWRIDI 318 >gi|290957021|ref|YP_003488203.1| transcriptional termination/antitermination factor [Streptomyces scabiei 87.22] gi|260646547|emb|CBG69644.1| putative transcriptional termination/antitermination factor [Streptomyces scabiei 87.22] Length = 328 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 136/330 (41%), Positives = 198/330 (60%), Gaps = 21/330 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE+N ETG ++++ E E++E Sbjct: 14 EKEISFDLLVEAIEAALLIAYHRTEGSRRHARVELNRETGHVTVW-AKEDPEDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + AR D + P DFGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QEARAFDDT------------PSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGMRLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPSLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D V VP Q Sbjct: 235 MGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|311113215|ref|YP_003984437.1| transcription termination factor NusA [Rothia dentocariosa ATCC 17931] gi|310944709|gb|ADP41003.1| transcription termination factor NusA [Rothia dentocariosa ATCC 17931] Length = 349 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/247 (46%), Positives = 167/247 (67%), Gaps = 8/247 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGR+A + +QV+ Q++R+AE EFKD+ G + SG +++ GN V VDL Sbjct: 80 PNNFGRIAAATVRQVLSQRLRDAEDASVLGEFKDREGTLASGVIQQ---GNNPRMVQVDL 136 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 G + V+ +E + E G R+++Y+ + RR Q+GP ++LSR+HP +++LF EVPE Sbjct: 137 GTIEAVLPANEQVPGEQYPHGTRIRAYLLEARRGQKGPSIVLSRSHPNLVLRLFEHEVPE 196 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I +G V++ +++R+ G R+K+AV +++ SI+ GAC+G G+RV+AV EL DEKIDIV Sbjct: 197 IADGSVKINSIAREAGHRSKIAVSATNPSINAKGACIGDMGARVRAVAAELNDEKIDIVD 256 Query: 279 WSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 +S D A F+ AL PA VT+V++ D IVP EQLSLAIGR GQN RLA++LTGW Sbjct: 257 YSTDPAEFITAALSPAKVTEVIIADPREYSARAIVPDEQLSLAIGREGQNARLAAKLTGW 316 Query: 338 TIDIITE 344 IDI+ E Sbjct: 317 RIDILAE 323 >gi|237736658|ref|ZP_04567139.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC 9817] gi|229420520|gb|EEO35567.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC 9817] Length = 354 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 204/325 (62%), Gaps = 3/325 (0%) Query: 22 IDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQI 79 I ++ +LS + ++ A + YG D+ VEI+ ETGD+ ++ + VV E++ + +I Sbjct: 22 ISKESLLSTVEQALLAAYKKNYGEEEDVEVEIDRETGDVKIYEVKTVVPTEDLYDAAIEI 81 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 S A + + IG V+ + +F R A+Q+ KQ++IQKVREAER+ Y FK K Sbjct: 82 SYDDALEIKKRVKIGEVIRIEVNCEEFRRNAIQNGKQIVIQKVREAEREYIYDRFKVKEH 141 Query: 140 EIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +II+G ++R+ E NV ++ + ++ E + R G+R+K Y+ +V + + P++ Sbjct: 142 DIINGIIRRIDERKNVFIEFDGIEAILPPVEQSPADTYRVGERIKVYLAEVEKTNKFPKI 201 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 ++SR H + KLF +E+PEI +G++++KAV+R+ GSRAK+AV+S+D +ID VGAC+G + Sbjct: 202 VISRKHEGLLRKLFELEIPEITSGLIEIKAVAREAGSRAKVAVYSADPNIDTVGACIGQK 261 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G R++ +V EL EKIDIVVW FV L PA V V + E+ VIV QLS Sbjct: 262 GLRIKNIVNELNGEKIDIVVWKESVEEFVSAVLSPAKVVSVEVVEEENTARVIVDNSQLS 321 Query: 319 LAIGRRGQNVRLASQLTGWTIDIIT 343 LAIG+ GQN RLA++LTG +DI T Sbjct: 322 LAIGKNGQNARLAAKLTGMRVDIKT 346 >gi|328955634|ref|YP_004372967.1| NusA antitermination factor [Coriobacterium glomerans PW2] gi|328455958|gb|AEB07152.1| NusA antitermination factor [Coriobacterium glomerans PW2] Length = 411 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 201/354 (56%), Gaps = 50/354 (14%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL---EVVEEVENY 75 EK ID+ ++ + S+ K+ + V I+ TG + ++ L+ E EE Y Sbjct: 15 EKHIDQLYLIDCLEQSLSKSYADILHLEYGAEVTIDRATGKVYVYELVPKGEPDEETGEY 74 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 T D V P D R+A Q AK I VR + R++ Y EF Sbjct: 75 T-------------EFDKKDVT-----PKDTSRIAAQHAKAEINAIVRNSAREQIYEEFS 116 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGV--------IRRDETISRENLRPG-------D 180 D++G+II+GTV + IV + +GV +RR E + N RP Sbjct: 117 DRIGDIITGTVLQSTPDFTIVKI--REGVEAELPHFDLRRFE--NERNERPAGERYMHNQ 172 Query: 181 RVKSYIYDVR------REQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 R+K+ I DVR + QRG P +++SRTHP + +LF +EVPEIY G V+VK+++ Sbjct: 173 RLKAVIIDVRDPNSTMQPQRGERSRPPIVISRTHPALIKRLFELEVPEIYEGTVEVKSIA 232 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R+PG R+K+AV S D +DPVGACVG +GSRV+ VV ELR E++D+++W D + FV NA Sbjct: 233 REPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRTVVGELRGERVDVILWDADPSVFVANA 292 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 L PA V++V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI E Sbjct: 293 LSPAKVSRVLIDEEKSYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKNE 346 >gi|300743965|ref|ZP_07072985.1| transcription termination factor NusA [Rothia dentocariosa M567] gi|300380326|gb|EFJ76889.1| transcription termination factor NusA [Rothia dentocariosa M567] Length = 345 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/247 (46%), Positives = 167/247 (67%), Gaps = 8/247 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGR+A + +QV+ Q++R+AE EFKD+ G + SG +++ GN V VDL Sbjct: 76 PNNFGRIAAATVRQVLSQRLRDAEDASVLGEFKDREGTLASGVIQQ---GNNPRMVQVDL 132 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 G + V+ +E + E G R+++Y+ + RR Q+GP ++LSR+HP +++LF EVPE Sbjct: 133 GTIEAVLPANEQVPGEQYPHGTRIRAYLLEARRGQKGPSIVLSRSHPNLVLRLFEHEVPE 192 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I +G V++ +++R+ G R+K+AV +++ SI+ GAC+G G+RV+AV EL DEKIDIV Sbjct: 193 IADGSVKINSIAREAGHRSKIAVSATNPSINAKGACIGDMGARVRAVAAELNDEKIDIVD 252 Query: 279 WSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 +S D A F+ AL PA VT+V++ D IVP EQLSLAIGR GQN RLA++LTGW Sbjct: 253 YSTDPAEFITAALSPAKVTEVIIADPREYSARAIVPDEQLSLAIGREGQNARLAAKLTGW 312 Query: 338 TIDIITE 344 IDI+ E Sbjct: 313 RIDILAE 319 >gi|34540099|ref|NP_904578.1| transcription elongation factor NusA [Porphyromonas gingivalis W83] gi|188994218|ref|YP_001928470.1| transcription elongation factor NusA [Porphyromonas gingivalis ATCC 33277] gi|34396410|gb|AAQ65477.1| N utilization substance protein A, putative [Porphyromonas gingivalis W83] gi|188593898|dbj|BAG32873.1| putative nitrogen utilization substance protein A [Porphyromonas gingivalis ATCC 33277] Length = 444 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/326 (34%), Positives = 204/326 (62%), Gaps = 3/326 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID++ +++V+ DS + ++G+ + V INPE GD ++R +VVE+ VE+ + Sbjct: 21 KNIDKETMINVLEDSFRNVLAKIFGSDDNFDVIINPEKGDFEIWRTRQVVEDGAVEDESR 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++SL A + DP ++G V+D + FGR A+ + +Q + K+ E +++ + F ++ Sbjct: 81 EVSLSDAHEIDPEAEVGEEVTDSVNFASFGRRAILNLRQALSSKIMELQKENLFNTFTER 140 Query: 138 VGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G++IS V +V + +++D ++ ++ + E I + R G+ V + + V P Sbjct: 141 IGQLISAEVYQVWKREALLIDDDGNELLMPKSEQIPSDFFRKGETVHAVVERVENANNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRT +F+ +LF + VPEI +G++ ++ V+R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIIVSRTSGEFLKRLFELNVPEIADGLITIRCVARIPGERAKMAVESYDDRIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V ELR E ID+ ++ ++A F+ AL PA ++ + L E + EV + E+ Sbjct: 261 MNGSRIRGIVRELRGENIDVTQYTTNTALFIQRALSPARISSIRLLEAEHKAEVFLRPEE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII 342 + LAIG+ N++LAS LTG+ I++ Sbjct: 321 VPLAIGKNASNIKLASGLTGYQIEVF 346 >gi|91217187|ref|ZP_01254149.1| transcription elongation factor NusA [Psychroflexus torquis ATCC 700755] gi|91184787|gb|EAS71168.1| transcription elongation factor NusA [Psychroflexus torquis ATCC 700755] Length = 411 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/336 (36%), Positives = 201/336 (59%), Gaps = 8/336 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ D + A + +G + + INP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVTLMAILEDVFRNALKKKFGQDDNFDIIINPDKGDLEIWRNRNVVNDGEVEDEN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISLK AR +P ++G VS+ + GR A+ + +Q +I K+ E + + F+D Sbjct: 76 KEISLKDARKIEPDFEVGEDVSEEVKLYQLGRRAILALRQNLISKIHEHDSTNTFKYFQD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 +GEI + V V + VI+ D GN + +I ++ I + R GD ++ I V + Sbjct: 136 LIGEIYTAEVHHVRHNVVILLDDDGN-ELIIPKEHQIPSDFYRKGDSIRGVIEKVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P ++LSRT P+F+ KLF E+PE+++G++ VK R PG +AK+AV + D IDPVGAC Sbjct: 195 KPIIILSRTTPKFLEKLFEQEIPEVFDGLITVKNAVRIPGEKAKVAVDTYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + ++ AL PA + + L+E+ EV + Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTNNPQLYIQRALSPAKIVNIKLNEEKKYAEVTLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDII---TEEED 347 E++S AIGR G N+RLA LTG+ I++ EEED Sbjct: 315 EEVSKAIGRGGHNIRLAGLLTGYNIEVFRDGIEEED 350 >gi|296394257|ref|YP_003659141.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] gi|296181404|gb|ADG98310.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] Length = 342 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 139/353 (39%), Positives = 212/353 (60%), Gaps = 33/353 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q A+ EK + + ++ +A ++ A + G SD RV+I+ + G + + Sbjct: 5 VQTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHQSDARVDIDRKHGAVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD ++ G D P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 59 --------------VAERDEDGNLLGEYDDT--PDDFGRIATMTARQVILQRLRDAEGDQ 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNS----DGVIRRDETISRENLRPGDR 181 + + K G+I++G V+R E G IV +G+ +GV+ E + E+L GDR Sbjct: 103 GFADLPVKEGDIVAGVVQRDARANERGLQIVRMGSELKSYEGVLPVAEQVPGESLVHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI +G VQ+ AV+R+ G R+K+AV Sbjct: 163 VKCYVVSVKPGRRGPQITLSRTHPNLVRKLFALEVPEIGDGAVQIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKV 299 S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL P A++T+ Sbjct: 223 KSTVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALLTR- 281 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 VLD V + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ Sbjct: 282 VLDPVVKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARK 334 >gi|226306117|ref|YP_002766077.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229491401|ref|ZP_04385225.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] gi|226185234|dbj|BAH33338.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229321686|gb|EEN87483.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] Length = 343 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 30/336 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ EK + + V++ + ++ A R G + R+++N +TG + + Sbjct: 10 AIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 A D D ++ G D P FGR+A +A+QVI+Q++R+AE +R + EF Sbjct: 59 ---------AHDTDADGNMIGEEWDDTPE-GFGRIAATTARQVILQRLRDAEHERSFGEF 108 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 GEI+ G ++R N V+V +G+ ++G++ E + EN G+R+K Y+ Sbjct: 109 STHEGEIVGGVIQRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGERIKCYV 168 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ V+R+ G R+K+AV S Sbjct: 169 VGVARGARGPQITLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAVASRVQ 228 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D ATFV NAL P+ +V+ V+D + Sbjct: 229 GLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTVVDPEA 288 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 RAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDI 324 >gi|315225519|ref|ZP_07867329.1| transcription termination factor NusA [Capnocytophaga ochracea F0287] gi|314944463|gb|EFS96502.1| transcription termination factor NusA [Capnocytophaga ochracea F0287] Length = 410 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 209/350 (59%), Gaps = 8/350 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 E + Y FKD +G++ + + + +I+ D GN + ++ +++ I + + G+ Sbjct: 122 HEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGN-EIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ V+ Sbjct: 241 VDSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE---EED 347 ++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E EED Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEED 350 >gi|21224053|ref|NP_629832.1| transcription elongation factor NusA [Streptomyces coelicolor A3(2)] gi|7801276|emb|CAB91140.1| putative transcriptional termination/antitermination factor [Streptomyces coelicolor A3(2)] Length = 340 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/330 (40%), Positives = 198/330 (60%), Gaps = 21/330 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE++ TG ++++ E +++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVW-AKEDPDDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + AR+ D + P DFGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QAAREFDDT------------PSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D VIVP Q Sbjct: 235 MGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARSARVIVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|256784869|ref|ZP_05523300.1| transcription elongation factor NusA [Streptomyces lividans TK24] gi|289768763|ref|ZP_06528141.1| transcription termination factor NusA [Streptomyces lividans TK24] gi|289698962|gb|EFD66391.1| transcription termination factor NusA [Streptomyces lividans TK24] Length = 340 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/330 (40%), Positives = 198/330 (60%), Gaps = 21/330 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE++ TG ++++ E +++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVW-AKEDPDDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + AR+ D + P DFGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QAAREFDDT------------PSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D VIVP Q Sbjct: 235 MGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARSARVIVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|297562526|ref|YP_003681500.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846974|gb|ADH68994.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 337 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/332 (39%), Positives = 195/332 (58%), Gaps = 24/332 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I ++V + D++ A G RVE+N TG ++++ + E E+ E+ Sbjct: 10 EKDISVELVAKAIEDALLIAYHREEGPEKRARVELNRSTGHVTVW-VAETDEDGESVG-- 66 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + G P FGR+A +AKQVI+Q++R+AE + EF + Sbjct: 67 -------------EFDGT------PTGFGRIATSTAKQVILQRLRDAEDELTLGEFAGRE 107 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +I+SG +++ + NV+VDLG + V+ E + E G+R+++Y+ VR+ RGP Sbjct: 108 HDIVSGIIQQGKDPRNVLVDLGKIEAVLPPQEQVPTETYTHGERLRAYVVQVRKGHRGPS 167 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ ++ GAC+G Sbjct: 168 VTLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVHSNRGGVNAKGACIGP 227 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI-EVIVPKEQ 316 GSRV+ V+ EL EKIDIV +S D A FV NAL PA V V + + R+ VIVP Q Sbjct: 228 LGSRVRNVMAELHGEKIDIVDYSEDPAVFVANALSPARVNSVEILDMASRVARVIVPDYQ 287 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 SLAIG+ GQN RLA++LTGW IDI ++ E + Sbjct: 288 QSLAIGKEGQNARLAARLTGWRIDIRSDAEPA 319 >gi|317125351|ref|YP_004099463.1| NusA antitermination factor [Intrasporangium calvum DSM 43043] gi|315589439|gb|ADU48736.1| NusA antitermination factor [Intrasporangium calvum DSM 43043] Length = 339 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 200/335 (59%), Gaps = 15/335 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I DV++ + ++ A G+ RVE++ +TG + ++ EE + Sbjct: 10 ALERERGISLDVLIPAIEQALLVAYHRTEGSYRSARVELDRKTGHVVVW----AREEGDL 65 Query: 75 YTCQISLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + + R + P D P+ FGR+A +A+QVI+Q++R+ E ++ + Sbjct: 66 LPAEEGERPQRGEPGPEFDDT--------PVGFGRIAASTARQVIVQRLRDLEDEQILGD 117 Query: 134 FKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 FK + G++ISG +++ + NV+VD G +G++ E + E G+R++ Y+ V+R Sbjct: 118 FKGREGDVISGVIQQSQDPRNVLVDFGAVEGILPLAEQVPGERYVHGERLRCYVVSVKRG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGPQV LSRTHP + LF EVPEI +G V++ A++R+ G R K+AV S ++ G Sbjct: 178 PRGPQVGLSRTHPNLVRTLFKFEVPEIADGTVEIAALARESGHRTKIAVHSKVPGVNAKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 AC+G G+RV+AV+TELR EKIDIV +S D ATFV AL PA V V ++D V+ Sbjct: 238 ACIGPMGARVRAVMTELRGEKIDIVDYSEDPATFVAAALSPARVQSVEIVDAAARTARVV 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 298 VPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTE 332 >gi|296125433|ref|YP_003632685.1| NusA antitermination factor [Brachyspira murdochii DSM 12563] gi|296017249|gb|ADG70486.1| NusA antitermination factor [Brachyspira murdochii DSM 12563] Length = 498 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/435 (32%), Positives = 237/435 (54%), Gaps = 44/435 (10%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPET-GDISLFRLLE 67 L Q++D EK I +++ V+A +++ A + YG +DI I+ + + ++++ Sbjct: 9 LQQLSD----EKDISVELLKEVIASTMELALKKKYG--NDINFHIHFDNKNNPTVYKGAN 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAE 126 VVEEV + +ISL+ A+ D I++G V + ++ FGR+ AK QK+ + E Sbjct: 63 VVEEVRDKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESMVAKTTFFQKISDLE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YI Sbjct: 123 KNIIYNEFKRRENQLVNGYFQREHKGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYI 182 Query: 187 YDV------RREQRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 Y V R + P ++LL+RT F+ KLF +E+PEI +G +++K V R PG + K+ Sbjct: 183 YKVQGGKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+ +DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++ Sbjct: 243 AVVSNKPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRI 302 Query: 300 VL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ--KDFN 356 ++ D + +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE + N + KD Sbjct: 303 IITDPEKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIV 362 Query: 357 ERTQFFMQAI--------------------------NVDEIIAHLLVAEGFADVEELACV 390 Q F +DE I L+ G +EEL + Sbjct: 363 PLNQIFSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSIEELYNL 422 Query: 391 KISEIASIEGFDEET 405 EI D++T Sbjct: 423 SAEEIMEKTNLDKDT 437 >gi|291543557|emb|CBL16666.1| transcription termination factor NusA [Ruminococcus sp. 18P13] Length = 353 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 136/335 (40%), Positives = 195/335 (58%), Gaps = 4/335 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVENYTC 77 E S++ D+++ + ++ KA Y D +RV+I+P T L + VV++ Sbjct: 15 ENSVETDLLVEKVKSAMTKAIHRAYPDSGDNVRVDIDPVTKTFDLCIIKTVVDDEPLDDN 74 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I++ AR DPS +GG V L R A QSAKQ I +RE R+ +F+DK Sbjct: 75 EINIDQARLIDPSAVVGGTVECKLDTASLSRNAAQSAKQSIRGDLREISRENLLTKFQDK 134 Query: 138 VGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 E I+ TV +VE G V L ++ + R+E I E L+ G VK YI + +Q+ Sbjct: 135 ENECITATVSQVEPGRGTVTLIYDKTELYLFRNEQIPGEVLKEGQSVKVYITGIANKQKK 194 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P + +SR H + +LF +EVPEIY+G V+V A+SR+ G+R K+AV S D ++D VGAC+ Sbjct: 195 PIIKISRAHRDLVKRLFELEVPEIYDGTVEVMAISREAGARTKIAVQSHDPNVDAVGACI 254 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPK 314 G + SR+ AVV EL EKIDI+ +S F+ AL PA V V + + R V+VP Sbjct: 255 GPKRSRITAVVNELNGEKIDIINYSDKPEEFIAKALAPAEVLSVTITDPENRSCTVVVPN 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 QLSLAIG RGQN +LA++LTG+ IDI E E+ I Sbjct: 315 NQLSLAIGNRGQNAKLAAKLTGYKIDIKPEFENPI 349 >gi|256820092|ref|YP_003141371.1| transcription elongation factor NusA [Capnocytophaga ochracea DSM 7271] gi|256581675|gb|ACU92810.1| NusA antitermination factor [Capnocytophaga ochracea DSM 7271] Length = 410 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 209/350 (59%), Gaps = 8/350 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKIDDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 E + Y FKD +G++ + + + +I+ D GN + ++ +++ I + + G+ Sbjct: 122 HEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGN-EIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINRVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ VV Sbjct: 241 VDSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE---EED 347 ++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E EED Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEED 350 >gi|213964507|ref|ZP_03392707.1| transcription termination factor NusA [Corynebacterium amycolatum SK46] gi|213952700|gb|EEB64082.1| transcription termination factor NusA [Corynebacterium amycolatum SK46] Length = 328 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 131/338 (38%), Positives = 201/338 (59%), Gaps = 33/338 (9%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D +L ++A +++++ R+ RVEI+ ETGD+ +F Sbjct: 14 EKGIPVDEMLGLVARALRESYRNTTAPAQYARVEIDRETGDVIVF--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 A++RD D G ++S+ P DF R A + +Q I+ ++R+AE D+ E+ D Sbjct: 59 -----AQERD---DEGNLISEWDDTPEDFERTAAFAVRQTILSRLRDAESDKVLDEYADL 110 Query: 138 VGEIISGTVKRVEYGN----VIVDLGNS----DGVIRRDETISRENLRPGDRVKSYIYDV 189 ++ISG V+R Y N V+V +G+ DG++ E + E L+ GDR+K Y+ V Sbjct: 111 SNQVISGVVQRDVYANEKGIVVVHIGSEANGRDGILMPAEQLPGEELKHGDRIKCYVVGV 170 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RG + LSRTHP+ + KLF +E+PE+ +G V++ +++R+ G R K+AV + ++ Sbjct: 171 NKTPRGVAIHLSRTHPELIRKLFELEIPEVADGAVELISIAREAGHRTKVAVRPTVKGLN 230 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 GAC+G RG RV +++ EL+ EKIDI+ + D A FV N+L PA V V +LD D R Sbjct: 231 AKGACIGPRGQRVSSIMNELKGEKIDIIDYDEDPAKFVGNSLAPAKVVSVKILDMDERRA 290 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 291 HVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDAE 328 >gi|139436991|ref|ZP_01771151.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC 25986] gi|133776638|gb|EBA40458.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC 25986] Length = 415 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 141/354 (39%), Positives = 203/354 (57%), Gaps = 50/354 (14%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV---VEEVENY 75 EK ID+ ++ + S+ K+ + +V I+ TG I ++RL + ++E N+ Sbjct: 16 EKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYRLEPIDDSMDEEGNF 75 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 T + V P + R+A Q AK I VR + R++ Y EF Sbjct: 76 TEFEEIDVT------------------PKNTSRIAAQHAKAEINAIVRNSAREQIYEEFS 117 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGV--------IRRDETISRENLRP-GDR----- 181 ++G++ISGTV + IV + +GV RR E + N RP G+R Sbjct: 118 GRIGDLISGTVLQSTPDFTIVKI--REGVEAELPHFDQRRYE--NERNERPMGERYLHNQ 173 Query: 182 -VKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +K+ I DVR E P +++SRTHP+ M +LF EVPEIY G VQ+K+++ Sbjct: 174 HIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQIKSIA 233 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +V NA Sbjct: 234 REPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAVYVANA 293 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 L PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 294 LSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSE 347 >gi|325000941|ref|ZP_08122053.1| transcription elongation factor NusA [Pseudonocardia sp. P1] Length = 344 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 136/338 (40%), Positives = 199/338 (58%), Gaps = 35/338 (10%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I + VL + ++ A R G SD RV+I+ +TG + R+L Sbjct: 10 AIERDKEIPFETVLEAIETALLTAYRHTEGHHSDARVDIDRKTG---VVRVL-------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVREAERDR 129 ARD + + G P P P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 ---------ARDASDAAEDG----TPGPEFDDTPEGFGRIAATTARQVIVQRLRDAEHER 105 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 Y EF K GE+++G V+R N VIV+LG ++ V+ E + E + G+R++ Sbjct: 106 TYGEFSTKEGEVVAGIVQRDARANARGVVIVELGGGTEAVLPAAEQVPGEVYQHGERIRC 165 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V R RG + LSRTHP + KLF +EVPE+ +G +++ +V+R+ G R+K+AV S+ Sbjct: 166 YVIGVARGPRGTTITLSRTHPNLVRKLFALEVPELVDGSIEIVSVAREAGFRSKIAVRSA 225 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDE 303 ++ GAC+G G+RV+ V+ EL EKIDI+ WS D FV NAL P+ +V+ VLDE Sbjct: 226 RPGLNAKGACIGPMGARVRGVMGELAGEKIDIIDWSEDPGEFVGNALSPSKVVSVTVLDE 285 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 286 RARIARVVVPDFQLSLAIGKEGQNARLAARLTGWKIDI 323 >gi|86133947|ref|ZP_01052529.1| transcription elongation protein NusA [Polaribacter sp. MED152] gi|85820810|gb|EAQ41957.1| transcription elongation protein NusA [Polaribacter sp. MED152] Length = 418 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 125/333 (37%), Positives = 203/333 (60%), Gaps = 12/333 (3%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 KSIDR ++S++ + + A + +G+ + + INP+ GD+ ++R VV + E+ Sbjct: 17 KSIDRVTLMSILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIWRNRVVVADGFSEDDNE 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L AR +P +IG VS+ + +D GR A+ + +Q +I K+ E + + +FKD Sbjct: 77 EIELSEARKIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISKIYEHDSTNIFKQFKDL 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 GE+ S V + + +I+ D GN + V+ + E I + R GD V+ I V Sbjct: 137 EGELFSAEVHHIRHNAIILLDDEGN-EIVLPKSEQIRSDFFRKGDNVRGVIKTVELRGNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+AV S D IDPVGACV Sbjct: 196 PAIILSRTSPAFLNKLFEQEIPEVFDGLITVEGVARIPGEKAKVAVDSYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDED-----VGRI 308 G++GSR+ +V EL +E ID++ ++ + F+ AL PA VT ++ + E+ GR+ Sbjct: 256 GVKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSMEITMYEEEKNGKKGRV 315 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V++ E++S AIGR G N+RLAS+LTG+ ID+ Sbjct: 316 SVLLKPEEVSKAIGRGGVNIRLASELTGYEIDV 348 >gi|326382939|ref|ZP_08204629.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] gi|326198529|gb|EGD55713.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] Length = 347 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 131/342 (38%), Positives = 203/342 (59%), Gaps = 31/342 (9%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K + + VLS + ++ A R G + R++I+ ++G + + + + ++E N Sbjct: 14 DKGVPAETVLSAIETALLTAYRHTDGFAPNARIDIDRKSGQVRV--MAQELDEDRN---- 67 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 V + D + P FGR+A +A+QVI+Q++R+AE ++ Y E Sbjct: 68 ----VVHEWDDT------------PEGFGRIAATTARQVILQRLRDAENEKNYGELVAHE 111 Query: 139 GEIISGTV----KRVEYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYDVR 190 GE++ G V K G VIV +G+ ++GVI E + E+ + GDR+K Y+ V Sbjct: 112 GEVVGGIVQADAKANARGMVIVQIGSDSNATEGVIPPAEQVPGESYKHGDRIKCYVVGVA 171 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV + + ++ Sbjct: 172 RGSRGPQITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVHTGVAGLNA 231 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIE 309 GAC+G G RV+ V++EL EKIDI+ ++ D A FV +AL PA +V+ V+D++ Sbjct: 232 KGACIGPMGQRVRNVMSELSGEKIDIIDYATDPAEFVGHALSPAKVVSVTVIDQETKAAR 291 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ D R Sbjct: 292 VIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDAGDGGPR 333 >gi|271963647|ref|YP_003337843.1| transcription elongation factor NusA [Streptosporangium roseum DSM 43021] gi|270506822|gb|ACZ85100.1| transcription elongation factor NusA [Streptosporangium roseum DSM 43021] Length = 331 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 126/325 (38%), Positives = 197/325 (60%), Gaps = 23/325 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+V+ + D++ A G + R E++ ++G +++F E+++ + + Sbjct: 10 EKDISFDLVVKAIEDALLIAYFRSEGAAAKARAELDRQSGHVTIF-----AAEIDDESGE 64 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 V R+ D + P +F R+A +AKQVI+Q++R+AE + + EF + Sbjct: 65 ----VLREFDDT------------PGNFSRIAATTAKQVILQQLRDAEDEINFGEFASRE 108 Query: 139 GEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 GE+++G +++ + V+ VDLG + V+ +E + E G+R++ Y+ V++ +GP Sbjct: 109 GELVAGVIQQGKDPRVVLVDLGKIEAVLPHNEQVPGEEYVHGERLRCYVVQVKKGHKGPS 168 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S ++ GAC+G Sbjct: 169 VTLSRTHPGLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGVNAKGACIGP 228 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 GSRV+ V+ EL EKIDI+ WS D A FV NAL P+ V+ V V+D + V VP Q Sbjct: 229 MGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPSRVSHVEVIDAEGRAARVTVPDYQ 288 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI 341 LSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 LSLAIGKEGQNARLANRLTGWRIDI 313 >gi|320008230|gb|ADW03080.1| NusA antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/251 (46%), Positives = 165/251 (65%), Gaps = 2/251 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGR+A +AKQVI+Q++R+AE DR + E+ G++++G V++ + NV+VD+G Sbjct: 78 PSGFGRIAATTAKQVILQRLRDAEDDRTFGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKL 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+++Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 138 EAILPVQEQVPGEEYTHGLRLRTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V ++A++R+ G R K+AV S+ + ++P GAC+G GSRV+ V+ EL EKIDIV WS Sbjct: 198 GSVVIEAIAREAGHRTKIAVRSTRAGLNPKGACIGPMGSRVRNVMAELHGEKIDIVDWSD 257 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 258 DPAEMVANALSPARVSKVEVVDLGTRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 317 Query: 341 IITEEEDSINR 351 I + E R Sbjct: 318 IRPDTETEAER 328 >gi|183981905|ref|YP_001850196.1| N utilization substance protein a NusA [Mycobacterium marinum M] gi|183175231|gb|ACC40341.1| N utilization substance protein a NusA [Mycobacterium marinum M] Length = 347 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/337 (39%), Positives = 198/337 (58%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 10 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 AR+ D D G V+S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 59 ---------ARETD---DDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 106 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R++ Y Sbjct: 107 FSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 167 VVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 227 PGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQT 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|332670044|ref|YP_004453052.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484] gi|332339082|gb|AEE45665.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484] Length = 350 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 205/343 (59%), Gaps = 31/343 (9%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +R++ L V+ +I++A S Y G+ RVE++ +G ++++ Sbjct: 14 EREISLDVLVAAIEQALLSAYHRTPGSHQRARVEVDRRSGHVTVW--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMD-----FGRVAVQSAKQVIIQKVREAERDRQYLE 133 AR+ P + G V +P D FGR+A +A+QVI+Q++R+AE D+ Sbjct: 59 -----AREPAPVGEDGRPVEVDMPEFDDTPDGFGRIATATARQVIVQRLRDAEDDQVLGT 113 Query: 134 FKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 F+ K GE++ G +++ + V+VD+G ++ V+ + E + E G+R+++Y+ +V R Sbjct: 114 FRGKEGEVLGGVIQQGRDPRTVLVDVGGTEAVLPQHEQVPGEEYVHGERLRAYVLEVARG 173 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGPQV LSRTHP + +LF +EVPE+ +G V++ A++R+ G R K+AV ++ + ++ G Sbjct: 174 PRGPQVTLSRTHPNLVRRLFALEVPEVADGTVEITAMAREAGHRTKMAVRATVAGVNAKG 233 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVI 311 AC+G G RV+AV+ EL EKIDIV S D A + +AL PA +V+ V+D D V+ Sbjct: 234 ACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVVSVTVVDPDARAARVV 293 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + D Sbjct: 294 VPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAETGAADESD 336 >gi|325971224|ref|YP_004247415.1| NusA antitermination factor [Spirochaeta sp. Buddy] gi|324026462|gb|ADY13221.1| NusA antitermination factor [Spirochaeta sp. Buddy] Length = 497 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/343 (36%), Positives = 208/343 (60%), Gaps = 7/343 (2%) Query: 11 QIADAV---AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +I DA+ EK+I ++V+S + D ++ A + +GT + +E + + + L + Sbjct: 4 EIGDAIRSMVAEKNISEELVISTIEDILRAAYKRKFGTDENAVIEFSEDFLSVELASRRK 63 Query: 68 VVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V++ Y +I L A++ +IG + P+ DF R++VQSAKQ Q R+ Sbjct: 64 IVDDDNWYNEVTEIPLSEAKEIHEDCEIGDELLIPVDLKDFDRISVQSAKQRAHQSFRDI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++D Y E+K K G++I G +R + G++ VD+G ++G++ R SRE+ D++K Sbjct: 124 QKDTLYSEYKAKEGQLIIGYYRRQLPNGDIYVDIGTTEGLLPRRNQSSRESYGSNDKIKC 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +RG +V+LSRT P + KLF +EVPEI + + + R+ G R K+AV S Sbjct: 184 YVEKVEKAERGLRVVLSRTSPDLIRKLFEVEVPEIAQNQIDIIKIVREAGYRTKVAVASR 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDE 303 + IDPVGACVG++G+R+Q +++E+ EKIDI+ + + ++ NAL PA V VVLD+ Sbjct: 244 NDDIDPVGACVGLKGNRIQTIMSEIEGEKIDILRYDTNPVNYIRNALSPAQVKDVVVLDK 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 ++ IV QLSLAIG++G NVRLA++L W ID+ T+ + Sbjct: 304 NIYHAVAIVEDTQLSLAIGKQGLNVRLANKLVDWMIDVKTQSQ 346 >gi|117928724|ref|YP_873275.1| transcription elongation factor NusA [Acidothermus cellulolyticus 11B] gi|117649187|gb|ABK53289.1| NusA antitermination factor [Acidothermus cellulolyticus 11B] Length = 348 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/334 (38%), Positives = 198/334 (59%), Gaps = 24/334 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A + G RV ++ +TG++++ L + E Sbjct: 14 EKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTV---LAAETDAEG---- 66 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 V R+ D + P DF R+A +AKQVI+Q++R+AE + + E+ + Sbjct: 67 ---NVIREFDHT------------PQDFNRIAAMTAKQVILQRLRDAEHELTFGEYAGRE 111 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+++ G +++ + NV V+LG +GV+ E + E G+R++ Y+ V + RGPQ Sbjct: 112 GDVVGGIIQQQHDSRNVYVNLGKVEGVLPVTEQVPGERYVHGERIRCYVLSVHKGIRGPQ 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S ++ GAC+G Sbjct: 172 ITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGLNAKGACIGP 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+AV+ EL EKIDI+ +S D ATFV NAL PA VT V ++D VIVP Q Sbjct: 232 LGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKSARVIVPDYQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 LSLAIGR GQN RLA++LTGW IDI + E +++ Sbjct: 292 LSLAIGREGQNARLAARLTGWRIDIRPDTEAALS 325 >gi|294631732|ref|ZP_06710292.1| transcription termination factor NusA [Streptomyces sp. e14] gi|292835065|gb|EFF93414.1| transcription termination factor NusA [Streptomyces sp. e14] Length = 328 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/332 (40%), Positives = 196/332 (59%), Gaps = 21/332 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE+N ETG ++++ E E++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW-AKEDPEDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + R+ D + P FGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QAPREFDDT------------PSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V KV V+D V VP Q Sbjct: 235 MGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVHKVEVVDLAARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 LSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTEQA 326 >gi|239928612|ref|ZP_04685565.1| transcription elongation factor NusA [Streptomyces ghanaensis ATCC 14672] gi|291436937|ref|ZP_06576327.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672] gi|291339832|gb|EFE66788.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672] Length = 328 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/332 (40%), Positives = 198/332 (59%), Gaps = 21/332 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE+N ETG ++++ E E++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW-AKEDPEDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + R+ D + P FGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QEPREFDDT------------PSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E+ G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYPHGMRLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D V VP Q Sbjct: 235 MGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 LSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTEQA 326 >gi|302558072|ref|ZP_07310414.1| transcription termination factor NusA [Streptomyces griseoflavus Tu4000] gi|302475690|gb|EFL38783.1| transcription termination factor NusA [Streptomyces griseoflavus Tu4000] Length = 332 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 198/332 (59%), Gaps = 21/332 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I ++++ + ++ A G+ RVE+N ETG ++++ E E++E Sbjct: 14 EKEISLELLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW-AKEDPEDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + AR+ D + P FGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QEAREFDDT------------PSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V++V ++D V VP Q Sbjct: 235 MGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSRVDIVDMAARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 LSLAIG+ GQN RLA++LTGW IDI + E S Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTEQS 326 >gi|302554522|ref|ZP_07306864.1| transcription termination factor NusA [Streptomyces viridochromogenes DSM 40736] gi|302472140|gb|EFL35233.1| transcription termination factor NusA [Streptomyces viridochromogenes DSM 40736] Length = 340 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/330 (40%), Positives = 197/330 (59%), Gaps = 21/330 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE+N ETG ++++ E +++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW-AKEDPDDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + AR+ D + P FGR+A +AKQVI+Q++R+AE D E+ + Sbjct: 70 ---QEAREFDDT------------PTGFGRIAATTAKQVILQRLRDAEDDATLGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ V + RGP Sbjct: 115 GDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYGHGMRLRSYVVRVAKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV ++D V VP Q Sbjct: 235 VGGRVRNVMGELNGEKIDIVDWSEDPAEMVANALSPARVSKVEIVDMATRSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|296171600|ref|ZP_06852840.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894055|gb|EFG73817.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 351 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 203/346 (58%), Gaps = 37/346 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 + I A + +DR + ++ + ++I+ A + Y G +D R+EI+ +TG + + Sbjct: 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVRE 124 VAR+ D D G V+S+ P FGR+A +A+QV++Q+ R+ Sbjct: 58 -----------------VARETD---DDGNVISEWDDTPEGFGRIAATTARQVMLQRFRD 97 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENL 176 AE +R Y EF + GEI++G ++R N V+V +G S+GVI E + E+ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESY 157 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+RV+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R Sbjct: 158 EHGNRVRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHR 217 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ + D + FV NAL PA V Sbjct: 218 SKIAVKSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPSRFVANALSPAKV 277 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V ++D + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 278 VSVSIIDPNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|152965409|ref|YP_001361193.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216] gi|151359926|gb|ABS02929.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216] Length = 339 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 118/248 (47%), Positives = 166/248 (66%), Gaps = 2/248 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P FGR+A +A+QVI+Q++R+AE D E+ GEI+SG V++ ++ VDLG+ Sbjct: 80 PSGFGRIAATTARQVILQRLRDAEDDAVIGEYAQTEGEIVSGVVQQGRDPRMVQVDLGSL 139 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 +GV+ E + E G R++ ++ V++ +GPQV+LSR+HPQ + KLF +EVPEI + Sbjct: 140 EGVLPPQEQVPGEKYEHGSRLRCFVVSVKKGPKGPQVVLSRSHPQLVKKLFALEVPEIAD 199 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G VQ+ A+SR+ G R+K+AV ++ ++ GAC+G G RV+AV+ ELR EKIDIV S Sbjct: 200 GTVQITALSREAGHRSKMAVRATRGGVNAKGACIGPMGQRVRAVMAELRGEKIDIVDHSD 259 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FV NAL PA V+ V V+D VIVP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 260 DPAQFVGNALSPARVSSVEVVDLAARSARVIVPDYQLSLAIGKEGQNARLAAKLTGWRID 319 Query: 341 IITEEEDS 348 I + E + Sbjct: 320 IRPDTEPT 327 >gi|239982635|ref|ZP_04705159.1| transcription elongation factor NusA [Streptomyces albus J1074] gi|291454476|ref|ZP_06593866.1| transcription elongation factor NusA [Streptomyces albus J1074] gi|291357425|gb|EFE84327.1| transcription elongation factor NusA [Streptomyces albus J1074] Length = 358 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 194/336 (57%), Gaps = 30/336 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RV ++ ETG ++++ Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRQARVRLDRETGHVTVW--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLP------PMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 DRD D+ G V P P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 59 ----AKEDRD---DLVGAVEGTEPREFDDTPSDFGRIAATTAKQVILQRLRDAQDDATLG 111 Query: 133 EFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ V + Sbjct: 112 EYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYPHGARLRSYVVRVAK 171 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ Sbjct: 172 GVRGPSVTLSRTHPGLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAK 231 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEV 310 GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D V Sbjct: 232 GACIGPMGGRVRNVMAELNGEKIDIVDWSDDPADMVANALSPARVSKVEVVDFAARSARV 291 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 292 TVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 327 >gi|213962910|ref|ZP_03391170.1| transcription termination factor NusA [Capnocytophaga sputigena Capno] gi|213954567|gb|EEB65889.1| transcription termination factor NusA [Capnocytophaga sputigena Capno] Length = 410 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 209/350 (59%), Gaps = 8/350 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N QI+L AR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRVVVEDDAVTNDNQQIALSAARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 E + Y FKD +G++ + + + +I+ D GN + ++ +++ I + + G+ Sbjct: 122 HEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGN-EIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPVFLERLFEQEIPEIADGLITISKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + AL PA V+ V+ Sbjct: 241 VDSFDERIDAVGACVGVRGARIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE---EED 347 ++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E EED Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGVTEED 350 >gi|255326386|ref|ZP_05367470.1| transcription termination factor NusA [Rothia mucilaginosa ATCC 25296] gi|255296603|gb|EET75936.1| transcription termination factor NusA [Rothia mucilaginosa ATCC 25296] Length = 365 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 167/247 (67%), Gaps = 8/247 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGR+A + +QV+ Q++R+AE EFKD+ G ++SG +++ GN V VDL Sbjct: 80 PNNFGRIAAATVRQVLSQRLRDAEDASVLGEFKDREGTLVSGVIQQ---GNNPRMVQVDL 136 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 G + V+ +E + E G R+++Y+ + RR +GP +++SR+HP +++LF EVPE Sbjct: 137 GTVEAVLPSNEQVPGEKYPHGSRLRAYLVEARRGPKGPSIVVSRSHPNLVLRLFEHEVPE 196 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I G+V + +++R+ G R+K+AV + + +I+ GAC+G G+RV+AV EL DEKIDIV Sbjct: 197 ISEGLVSINSIAREAGHRSKIAVSAKNPTINAKGACIGDMGARVRAVAAELNDEKIDIVD 256 Query: 279 WSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 +S D ATF+ AL PA VT+V++ + +VP +QLSLAIGR GQN RLA++LTGW Sbjct: 257 YSTDPATFIAAALSPAKVTEVIIANPREYSARAVVPDDQLSLAIGREGQNARLAAKLTGW 316 Query: 338 TIDIITE 344 IDI++E Sbjct: 317 RIDILSE 323 >gi|288817343|ref|YP_003431690.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6] gi|288786742|dbj|BAI68489.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6] gi|308750950|gb|ADO44433.1| transcription termination factor NusA [Hydrogenobacter thermophilus TK-6] Length = 327 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 171/243 (70%), Gaps = 1/243 (0%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDG 163 D R+A +AK+ ++++ +AE +R YLEF ++ GEI G V+RV E G+V+VDLG G Sbjct: 77 DVNRIAAYAAKEEFLKELEKAEEERGYLEFVEQEGEITVGIVRRVLENGDVLVDLGRVMG 136 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 V+ + E I +E+ R G+R+K+ + +VR+ + +++LSRTHP+F+ KL EVPEI +G Sbjct: 137 VLPKREQIPKESYRQGERIKALVLEVRKHRGRYEIILSRTHPKFLRKLLEAEVPEIKSGE 196 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 +++KA++R+PG RAK+ V + D +DPVG VG+RGSR+ V EL EKID++ W+ + Sbjct: 197 IEIKAITREPGERAKVLVHAKDMKMDPVGVIVGLRGSRINPVSKELSGEKIDVIRWTENV 256 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + +L PA VTKV L R EV VPKE+LSLAIG+ G NV+LA+++TGW ID+++ Sbjct: 257 EELIKKSLSPAPVTKVRLIPKDKRAEVAVPKEKLSLAIGKHGVNVKLANRITGWYIDVLS 316 Query: 344 EEE 346 EE+ Sbjct: 317 EED 319 >gi|283458507|ref|YP_003363135.1| transcription elongation factor [Rothia mucilaginosa DY-18] gi|283134550|dbj|BAI65315.1| transcription elongation factor [Rothia mucilaginosa DY-18] Length = 365 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 167/247 (67%), Gaps = 8/247 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGR+A + +QV+ Q++R+AE EFKD+ G ++SG +++ GN V VDL Sbjct: 80 PNNFGRIAAATVRQVLSQRLRDAEDASVLGEFKDREGTLVSGVIQQ---GNNPRMVQVDL 136 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 G + V+ +E + E G R+++Y+ + RR +GP +++SR+HP +++LF EVPE Sbjct: 137 GTVEAVLPSNEQVPGEKYPHGSRLRAYLVEARRGPKGPSIVVSRSHPNLVLRLFEHEVPE 196 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I G+V + +++R+ G R+K+AV + + +I+ GAC+G G+RV+AV EL DEKIDIV Sbjct: 197 ISEGLVAINSIAREAGHRSKIAVSAKNPTINAKGACIGDMGARVRAVAAELNDEKIDIVD 256 Query: 279 WSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 +S D ATF+ AL PA VT+V++ + +VP +QLSLAIGR GQN RLA++LTGW Sbjct: 257 YSTDPATFIAAALSPAKVTEVIIANPREYSARAVVPDDQLSLAIGREGQNARLAAKLTGW 316 Query: 338 TIDIITE 344 IDI++E Sbjct: 317 RIDILSE 323 >gi|297571193|ref|YP_003696967.1| transcription termination factor NusA [Arcanobacterium haemolyticum DSM 20595] gi|296931540|gb|ADH92348.1| transcription termination factor NusA [Arcanobacterium haemolyticum DSM 20595] Length = 325 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/337 (36%), Positives = 201/337 (59%), Gaps = 28/337 (8%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V E ID +V+L+ + +++ A + G + RVE+N TG ++++ Sbjct: 11 VESELGIDLNVLLNAIEEALVHAYNRVPGAVRGARVELNRSTGKVTVW------------ 58 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A + D + ++ G D P DFGR+A +A+ +I Q++R+AE DR F+ Sbjct: 59 --------APEVDENNEVIGEFDDT--PNDFGRIATSTARSIIAQRLRDAETDRVLGSFQ 108 Query: 136 DKVGEIISGTVKRVEYGN-----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 K G+++SG V+ N + ++LG + G++R DE ++ E+ + GD +++ + D+ Sbjct: 109 GKKGQLVSGVVEGTAGSNPESRDLFIELGENRGLLRSDEQVASEHFKRGDLLRALVLDIS 168 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 RG + LSR+HP F+ +LF EVPEI +G V++ A++R+ G R K+AV+S+D ++ Sbjct: 169 VGPRGASIRLSRSHPDFVRQLFETEVPEIADGPVEIVALAREAGHRTKVAVWSNDDAVAA 228 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 G+ +G G RV+AV EL EKID+V + D A F+ AL PA VT+V +L+ D+ + Sbjct: 229 KGSLIGHNGQRVRAVTAELNGEKIDVVDYDDDPAKFIAAALSPAKVTEVEILNRDMRQAR 288 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP +Q SLAIG+ QNVRLA++LTGW+IDI E + Sbjct: 289 AIVPDDQASLAIGKEAQNVRLAAKLTGWSIDIRRESD 325 >gi|120403303|ref|YP_953132.1| transcription elongation factor NusA [Mycobacterium vanbaalenii PYR-1] gi|119956121|gb|ABM13126.1| NusA antitermination factor [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/340 (38%), Positives = 198/340 (58%), Gaps = 31/340 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I DVV+ + ++ A R G +D ++I+ +TG + + Sbjct: 6 AIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKV------------ 53 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +AR D ++ D P FGR+A +A+QVI+Q++R+AE ++ Y EF Sbjct: 54 --------IARQTDEDGNVLHEWDDT--PEGFGRIAATTARQVILQRLRDAENEKNYGEF 103 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 + G+I++G ++R N V+V +G+ S+GVI E + E GDR++ Y+ Sbjct: 104 SAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYV 163 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV + Sbjct: 164 VGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVATRAP 223 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA +V+ V+DE Sbjct: 224 GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAA 283 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ Sbjct: 284 RAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDD 323 >gi|239944687|ref|ZP_04696624.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] gi|239991150|ref|ZP_04711814.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 11379] gi|291448148|ref|ZP_06587538.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] gi|291351095|gb|EFE77999.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] Length = 346 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 116/252 (46%), Positives = 166/252 (65%), Gaps = 2/252 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGR+A +AKQVI+Q++R+AE D+ + E+ G++++G V++ + NV+VD+G Sbjct: 78 PSGFGRIAATTAKQVILQRLRDAEDDKTFGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKL 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+++Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 138 EAILPVQEQVPGEEYTHGLRLRTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V ++A++R+ G R K+AV S+ + ++P GAC+G GSRV+ V+ EL EKIDIV WS Sbjct: 198 GSVVIEAIAREAGHRTKIAVRSTRAGLNPKGACIGPMGSRVRNVMAELHGEKIDIVDWSD 257 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 258 DPAEMVANALSPARVSKVEVVDLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 317 Query: 341 IITEEEDSINRQ 352 I + E R+ Sbjct: 318 IRPDTETDEERE 329 >gi|254226551|ref|ZP_04920134.1| Transcription elongation factor [Vibrio cholerae V51] gi|125620955|gb|EAZ49306.1| Transcription elongation factor [Vibrio cholerae V51] Length = 271 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 165/245 (67%) Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FV Sbjct: 1 AAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFV 60 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 INA+ PA V +++DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Sbjct: 61 INAMAPADVASIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADL 120 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 Q++ + FM+ +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A Sbjct: 121 QKKHQEESMASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAD 180 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 E++ RA+E L I + ++ L +E+L ++ G++ + L G+ T+EDLA V Sbjct: 181 ELRSRAKEALTTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGV 240 Query: 468 DDLLG 472 DDL G Sbjct: 241 DDLEG 245 >gi|313665234|ref|YP_004047105.1| transcription termination factor NusA [Mycoplasma leachii PG50] gi|312949351|gb|ADR23947.1| transcription termination factor NusA [Mycoplasma leachii PG50] Length = 558 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 210/342 (61%), Gaps = 6/342 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123 L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 EAER R Y +F GE++ V + N ++D+ + + +++TI+ E + + + Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+AV Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P KV+ Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPV---KVISI 299 Query: 303 EDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +G +++VP QLSLAIG++G +L + L I+I + Sbjct: 300 NKIGDEYDIVVPDSQLSLAIGKQGITAKLIASLLKTKINIFS 341 >gi|145224621|ref|YP_001135299.1| transcription elongation factor NusA [Mycobacterium gilvum PYR-GCK] gi|315444953|ref|YP_004077832.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] gi|145217107|gb|ABP46511.1| NusA antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315263256|gb|ADT99997.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] Length = 353 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/342 (38%), Positives = 198/342 (57%), Gaps = 31/342 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I DVV+ + ++ A R G +D ++I+ +TG + + Sbjct: 10 AIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 AR D ++ D P FGR+A +A+QVI+Q++R+AE ++ Y EF Sbjct: 59 ---------ARQTDEDGNVLHEWDDT--PEGFGRIAATTARQVILQRLRDAENEKNYGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 + G+I++G ++R N V+V +G+ S+GVI E + E GDR++ Y+ Sbjct: 108 SAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 168 VGVARGAREPVITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVTSRAP 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA +V+ V+DE Sbjct: 228 GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAA 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ D Sbjct: 288 RAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDAD 329 >gi|282861439|ref|ZP_06270504.1| NusA antitermination factor [Streptomyces sp. ACTE] gi|282564097|gb|EFB69634.1| NusA antitermination factor [Streptomyces sp. ACTE] Length = 343 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 116/252 (46%), Positives = 166/252 (65%), Gaps = 2/252 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGR+A +AKQVI+Q++R+AE DR + E+ G++++G V++ + NV+VD+G Sbjct: 78 PSGFGRIAASTAKQVILQRLRDAEDDRTFGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKL 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+++Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 138 EAILPVQEQVPGEEYTHGLRLRTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V ++A++R+ G R K+AV S+ + ++P GAC+G GSRV+ V+ EL EKIDIV WS Sbjct: 198 GSVVIEAIAREAGHRTKIAVRSTRAGLNPKGACIGPMGSRVRNVMAELHGEKIDIVDWSD 257 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V++V V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 258 DPAEMVANALSPARVSEVEVVDLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 317 Query: 341 IITEEEDSINRQ 352 I + E R+ Sbjct: 318 IRPDTETDEERE 329 >gi|42526617|ref|NP_971715.1| transcription elongation factor NusA [Treponema denticola ATCC 35405] gi|41816810|gb|AAS11596.1| N utilization substance protein A, putative [Treponema denticola ATCC 35405] Length = 495 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/345 (38%), Positives = 200/345 (57%), Gaps = 25/345 (7%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A EK ID D VL ++ +++ + + +GT D N ETG I ++ + E+ +N Sbjct: 13 AQEKGIDDDFVLHIVEQALKASYKKQFGT--DANAVFNEETGKIYSKKI--ITEDAKNPV 68 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 ISL+ A+ PS + G + + P G +V+ Q IQ +RE ++D Y E+ Sbjct: 69 FDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIREMQKDTLYAEYST 128 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD------------RVKS 184 KVGEII G R GN+ VDLG +G++ + PGD R+K+ Sbjct: 129 KVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQC------PGDHFGRNAAAGEESRIKA 182 Query: 185 YIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +V++ ++ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+AV Sbjct: 183 LVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIAVS 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V +L Sbjct: 243 TDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVMIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ Sbjct: 303 DAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQ 347 >gi|163839410|ref|YP_001623815.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] gi|162952886|gb|ABY22401.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] Length = 330 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/244 (45%), Positives = 166/244 (68%), Gaps = 2/244 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P FGR+A +A+Q+I+Q++R+ E + EF+ K GE++SG +++ N++ V+LG Sbjct: 76 PAGFGRIAASTARQIILQRLRDVEDENVLGEFRGKEGELVSGQIQQGHNPNMVQVNLGTV 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 +GV+ E E G R+++++ DV R Q+GP + LSR+HP + KLF +EVPEI + Sbjct: 136 EGVLPPTEQSPGERYPHGSRIRAFVVDVHRGQKGPSITLSRSHPGLVRKLFELEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V++ A++R+ G R K+AV + I+ GAC+G GSRV+AV+TEL DEKIDIV +S Sbjct: 196 KSVEIVALAREAGHRTKIAVKAHRPGINAKGACIGEMGSRVRAVMTELNDEKIDIVDFSE 255 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ATF+ ++L P+ V V + ++ R VIVP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 DPATFIASSLSPSRVNSVTITDEATRSARVIVPDYQLSLAIGKEGQNARLAAKLTGWRID 315 Query: 341 IITE 344 II++ Sbjct: 316 IISD 319 >gi|240172759|ref|ZP_04751418.1| transcription elongation factor NusA [Mycobacterium kansasii ATCC 12478] Length = 347 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 205/346 (59%), Gaps = 37/346 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 + I A + +DR + ++ + ++I+ A S Y G +D R+EI+ ++G + + Sbjct: 1 MNIDMAALHAIEVDRGISVNELLETIKSALLSAYRHTQGHQTDARIEIDRKSGVVRV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVRE 124 +AR+ D D G ++S+ P FGR+A +A+QV++Q+ R+ Sbjct: 58 -----------------IARELD---DEGNLISEWDDTPEGFGRIAATTARQVMLQRFRD 97 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENL 176 AE +R Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVPGESY 157 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+R++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R Sbjct: 158 EHGNRLRCYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHR 217 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V Sbjct: 218 SKIAVRSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKV 277 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V+D++ V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 278 VSVSVIDQNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|118617680|ref|YP_906012.1| transcription elongation factor NusA [Mycobacterium ulcerans Agy99] gi|118569790|gb|ABL04541.1| N utilization substance protein a NusA [Mycobacterium ulcerans Agy99] Length = 347 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/337 (39%), Positives = 197/337 (58%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 10 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 AR+ D D G V+S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 59 ---------ARETD---DDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 106 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R++ Y Sbjct: 107 FSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 167 VVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G RV+ V++EL EKIDI+ + D FV NAL PA V V V+D+ Sbjct: 227 PGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSVIDQT 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWWIDI 323 >gi|258652414|ref|YP_003201570.1| transcription elongation factor NusA [Nakamurella multipartita DSM 44233] gi|258555639|gb|ACV78581.1| NusA antitermination factor [Nakamurella multipartita DSM 44233] Length = 336 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 200/336 (59%), Gaps = 31/336 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 AV EK ID + ++ + ++ A R G RV+I+ +TG I ++ +E ++ Sbjct: 10 AVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVW-----AQETDD 64 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 S ++ R+ D + P DFGR+A +A+QVI+Q++R+ + +R + +F Sbjct: 65 -----SGEIVREWDDT------------PEDFGRIAATTARQVILQRLRDVDNERTFGDF 107 Query: 135 KDKVGEIISGTV----KRVEYGNVIVDLGNS----DGVIRRDETISRENLRPGDRVKSYI 186 + ++I+GT+ K G V+V LG +G+I E + E+ G R++ Y+ Sbjct: 108 AGREHDLITGTISADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQRLRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV + + Sbjct: 168 VSVARGLRGPQITLSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAVRPAVA 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G+RV+AV++EL EKIDI+ + D ATFV NAL PA ++ V+D Sbjct: 228 GVNAKGACIGPMGARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTVIDPVA 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 KAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|111023601|ref|YP_706573.1| transcription elongation factor NusA [Rhodococcus jostii RHA1] gi|110823131|gb|ABG98415.1| transcription elongation protein NusA [Rhodococcus jostii RHA1] Length = 343 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 131/336 (38%), Positives = 198/336 (58%), Gaps = 30/336 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I + V+S + ++ A R G R++++ ++G + R++ Sbjct: 10 AIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSG---IVRVM-------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 A D D ++ G D P FGR+A +A+QVI+Q++R+AE +R + E+ Sbjct: 59 ---------AHDVDADGNMVGEEWDDTPE-GFGRIAATTARQVILQRLRDAEHERSFGEY 108 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 GEI+ G ++R N V+V +G+ ++G+I E + EN G+R+K Y+ Sbjct: 109 STHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYV 168 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 169 VGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQ 228 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ +V+ V+D D Sbjct: 229 GLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPDA 288 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 324 >gi|315604477|ref|ZP_07879542.1| transcription termination factor NusA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313804|gb|EFU61856.1| transcription termination factor NusA [Actinomyces sp. oral taxon 180 str. F0310] Length = 342 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 200/334 (59%), Gaps = 25/334 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 11 VENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV------------- 57 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +A D D + G D P +FGR+A +A+ VI+Q++R+A+ R + +F Sbjct: 58 -------MAMDEDEDGNPIGEFDDT--PKNFGRIAQATARSVIMQRLRDADDQRVFGDFA 108 Query: 136 DKVGEIISGTVKRVEYGN-VIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+GTV+ G +V + + + V+ E + E R GDR+++YI V R + Sbjct: 109 GREGQVITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKTAGETYRHGDRIRAYIVGVERTE 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV ++ I+ GA Sbjct: 169 RGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVVATRDGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIV 312 C+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+ D IV Sbjct: 229 CIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHSVDNRTATAIV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 P QLSLAIG+ GQN RLA++LTG+ IDI + E Sbjct: 289 PDFQLSLAIGKEGQNARLAARLTGFHIDIHADTE 322 >gi|312139328|ref|YP_004006664.1| transcriptional termination/antitermination factor nusa [Rhodococcus equi 103S] gi|325676662|ref|ZP_08156337.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] gi|311888667|emb|CBH47979.1| transcriptional termination/antitermination factor NusA [Rhodococcus equi 103S] gi|325552517|gb|EGD22204.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] Length = 343 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 194/336 (57%), Gaps = 30/336 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I +++ + ++ A R G R++++ ++G + + Sbjct: 10 AIEADKGISAGTIIAAIETALLTAYRHTEGHQPHARIDVDTKSGVVRVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ARD D + G D P FGR+A +A+QVI+Q++R+AE +R + EF Sbjct: 59 ---------ARDVDSDGNQVGEEWDDTP-EGFGRIAATTARQVILQRLRDAEHERSFGEF 108 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 GEI+ G ++R N V+V +G+ ++G+I E + E GDR+K Y+ Sbjct: 109 ATHEGEIVGGVIQRDTRANARGMVVVRIGSEANGAEGLIPPAEQVPGETYEHGDRIKCYV 168 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 169 VGVSRGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIVAVARESGHRSKIAVHSRVP 228 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ +V+ V+D + Sbjct: 229 GLNAKGACIGPMGQRVRNVMSELAGEKIDIIDYDEDPAKFVGNALSPSKVVSVTVVDPEA 288 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 324 >gi|294675008|ref|YP_003575624.1| transcription termination factor NusA [Prevotella ruminicola 23] gi|294472210|gb|ADE81599.1| transcription termination factor NusA [Prevotella ruminicola 23] Length = 408 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 204/327 (62%), Gaps = 5/327 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD + R VV EV + Sbjct: 12 KNIDRTTLVSVLEESFRNVIAKIFGSDENFDVIVNPDKGDFEIHRNRVVVPDGEVMDENK 71 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KDK Sbjct: 72 EIELSEAQKIEPDYEVGEEVSEEVQFAKFGRRAILNLRQTLASKILELEHDSLYQKYKDK 131 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 V +++SG V ++ V++ D GN + ++ E I +N G+ V++ + +V+ E Sbjct: 132 VHQVVSGEVYQIWKREVLLIDDEGNELHLPKQ-EQIPGDNYHKGETVRAVVKEVQNENNN 190 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P+++LSRT P F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACV Sbjct: 191 PRIILSRTSPVFLERLLEAEVPEIQDGLITIKRVARIPGDRAKVAVESYDDRIDPVGACV 250 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G++GSRV +V EL +E ID++ +S ++ F+ AL PA ++ + LD++ + EV + E Sbjct: 251 GVKGSRVHGIVRELCNENIDVINYSANTQLFIQRALSPAKISSINLDQENHKAEVYLQPE 310 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++SLAIGR G N++LAS LT +TID+ Sbjct: 311 EVSLAIGRGGMNIKLASMLTEYTIDVF 337 >gi|182435606|ref|YP_001823325.1| transcription elongation factor NusA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776240|ref|ZP_08235505.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|178464122|dbj|BAG18642.1| putative transcriptional termination/antitermination factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656573|gb|EGE41419.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 346 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/252 (46%), Positives = 166/252 (65%), Gaps = 2/252 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGR+A +AKQVI+Q++R+AE D+ + E+ G++++G V++ + NV+VD+G Sbjct: 78 PSGFGRIAATTAKQVILQRLRDAEDDKTFGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKM 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+++Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 138 EAMLPVQEQVPGEEYVHGLRLRTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V ++A++R+ G R K+AV S+ + ++P GAC+G GSRV+ V+ EL EKIDIV WS Sbjct: 198 GSVVIEAIAREAGHRTKIAVRSTRAGLNPKGACIGPMGSRVRNVMAELHGEKIDIVDWSE 257 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 258 DPAEMVANALSPARVSKVEVVDLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 317 Query: 341 IITEEEDSINRQ 352 I + E R+ Sbjct: 318 IRPDTETDEERE 329 >gi|325473159|gb|EGC76355.1| N utilization substance protein A [Treponema denticola F0402] Length = 495 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 25/345 (7%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A EK ID D VL ++ +++ + + +GT D N ETG I ++ + E+ +N Sbjct: 13 AQEKGIDDDFVLHIVEQALKASYKKQFGT--DANAVFNEETGKIYSKKI--ITEDAKNPV 68 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 ISL+ A+ PS + G + + P G +V+ Q IQ ++E ++D Y E+ Sbjct: 69 FDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIKEMQKDTLYAEYST 128 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD------------RVKS 184 KVGEII G R GN+ VDLG +G++ + PGD R+K+ Sbjct: 129 KVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQC------PGDHFGRNAAAGEESRIKA 182 Query: 185 YIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +V++ ++ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+AV Sbjct: 183 LVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIAVS 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V +L Sbjct: 243 TDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVMIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ Sbjct: 303 DAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQ 347 >gi|118470868|ref|YP_886962.1| transcription elongation factor NusA [Mycobacterium smegmatis str. MC2 155] gi|118172155|gb|ABK73051.1| transcription termination factor NusA [Mycobacterium smegmatis str. MC2 155] Length = 343 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 194/336 (57%), Gaps = 31/336 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I DVV+ + ++ A R G D R++I+ +TG + + Sbjct: 10 AIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKV------------ 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +AR D ++ D P FGR+A +A+QVI+Q++R+AE ++ Y EF Sbjct: 58 --------IARQTDADGNVLAEWDDT--PEGFGRIAATTARQVILQRLRDAENEKVYGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 G+I++G ++R N V+V +G+ S+GVI E + E GDRV+ Y+ Sbjct: 108 AAHEGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRVRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 168 VGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVASRVP 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V + ++ G Sbjct: 228 GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEAG 287 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 R VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 RAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|67923759|ref|ZP_00517223.1| Transcription termination factor NusA [Crocosphaera watsonii WH 8501] gi|67854386|gb|EAM49681.1| Transcription termination factor NusA [Crocosphaera watsonii WH 8501] Length = 424 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/299 (43%), Positives = 187/299 (62%), Gaps = 20/299 (6%) Query: 63 FRLL---EVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM-DFGRVAVQSAKQV 117 FR+L ++VEEVEN ISL+ ++ P ++G VV D P DFGR+A KQV Sbjct: 72 FRILSTKKIVEEVENIDHHISLEEVQEVAPEAELGDEVVLDVTPNQKDFGRMAAIQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRDETI 171 ++QK+R+ +R EF + G +++ V R E ++IV + ++ D ++ + E + Sbjct: 132 LLQKLRDQQRKLIQEEFNELEGTVLNARVLRFERQDIIVAVQSAFGQPEVDAILPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ AVS Sbjct: 192 PNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIVAVS 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +VV L+ + V+VP++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVVLLNAEERHALVLVPEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|83319641|ref|YP_424320.1| transcription elongation factor NusA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283527|gb|ABC01459.1| transcription elongation protein nusA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 558 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 209/342 (61%), Gaps = 6/342 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123 L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 EAER R Y +F GE++ V + N ++D+ + + +++TI+ E + + + Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++K VSR+PG R+K+AV Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P KV+ Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPV---KVISI 299 Query: 303 EDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +G +++VP QLSLAIG++G +L + L I+I + Sbjct: 300 NKIGDEYDIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFS 341 >gi|220912195|ref|YP_002487504.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6] gi|219859073|gb|ACL39415.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6] Length = 326 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 110/244 (45%), Positives = 169/244 (69%), Gaps = 2/244 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P FGR+A +A+Q+I+Q++R+ E D EFK + GE++SGT+++ ++I V+LG+ Sbjct: 76 PAGFGRIAASTARQIILQRLRDVEDDNVLGEFKGREGELVSGTIQQGNNPHMIQVNLGSL 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G+R+++ + DV R +GP V LSR+HP + KLF +EVPEI + Sbjct: 136 EALLPPPEQVPGEKYIHGNRLRALVIDVHRGTKGPSVTLSRSHPGLVRKLFELEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V++ A++R+ G R K+AV ++ S I+ GAC+G GSRV+AV+TEL DEKIDIV +S Sbjct: 196 HSVEIVALAREAGHRTKIAVKANASGINAKGACIGEMGSRVRAVMTELNDEKIDIVDFSE 255 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + ATF+ +AL P+ V V + ++ R V+VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 NPATFIASALSPSRVNSVTITDEATRSARVVVPDYQLSLAIGKEGQNARLAAKLTGWRID 315 Query: 341 IITE 344 I+++ Sbjct: 316 IVSD 319 >gi|187918654|ref|YP_001884220.1| transcription elongation factor NusA [Borrelia hermsii DAH] gi|119861502|gb|AAX17297.1| N utilization substance protein A [Borrelia hermsii DAH] Length = 496 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 208/340 (61%), Gaps = 15/340 (4%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + +TGD+ ++ ++VE Sbjct: 21 QMISNIASERGMSIDAIRKTVRESVMIAYKKYFGTSENALIKFDEDTGDLVVYSKKKIVE 80 Query: 71 EVENYTCQI------SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 EV+N +I +V D I+I P F R+++Q AKQ ++ Sbjct: 81 EVQNDILEILQDDIQEFEVVEDGYAYIEI--------DPKIFDRLSIQVAKQRTKSDLQG 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E + YLEFK K+ +I+ G V++ G++ V+LG++DGVI + SRE D+V+ Sbjct: 133 IEDNELYLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSSREVYGLNDKVRV 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V++ + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S Sbjct: 193 LVYSVKKGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGIIKIHKIVRDPGYRTKVAVYSE 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 IDPVG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + V ++DE Sbjct: 253 KEEIDPVGPCIGQKGVRIQSIIKELEGEKIDIIPYSRDIKEFIRDALTPAKIDNVYIVDE 312 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 D+ + V+V EQLSLAIG+ GQNVRLA++L W ID+ T Sbjct: 313 DLHKALVVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKT 352 >gi|169630217|ref|YP_001703866.1| transcription elongation factor NusA [Mycobacterium abscessus ATCC 19977] gi|169242184|emb|CAM63212.1| Transcription elongation protein NusA [Mycobacterium abscessus] Length = 331 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 193/336 (57%), Gaps = 33/336 (9%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A +K I D + ++ ++ A R G + R+EI+ +TG + + Sbjct: 11 MAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVM------------ 58 Query: 76 TCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 AR+ D G ++++ P FGR+A +A+QV Q VR+AE + ++ EF Sbjct: 59 --------ARETDQD---GNLITEWDATPEGFGRIAATTARQVFQQGVRDAENEHKFGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 + GEI+ G ++R N V+V +G+ S+GVI E + E GDR++ Y+ Sbjct: 108 STREGEIVGGVIQRDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRLRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S S Sbjct: 168 VGVSRGAREPLITLSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVASKVS 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + PD A FV NAL PA V V V+DE Sbjct: 228 GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVIDEAG 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 KAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|297202732|ref|ZP_06920129.1| transcription termination factor NusA [Streptomyces sviceus ATCC 29083] gi|297148179|gb|EFH28866.1| transcription termination factor NusA [Streptomyces sviceus ATCC 29083] Length = 328 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 118/248 (47%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +AKQVI+Q++R+AE D E+ + G+I+ G V++ + NV+VD+G Sbjct: 79 PSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVMGVVQQGRDPKNVLVDIGKL 138 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R++SY+ V R RGP V LSRTHP + KLF +EVPEI + Sbjct: 139 EAILPVQEQVPGETYPHGMRLRSYVVRVARGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 198 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKIDIV WS Sbjct: 199 GSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSD 258 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 259 DPAEMVANALSPARVSKVEVVDMAARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 318 Query: 341 IITEEEDS 348 I + E + Sbjct: 319 IRPDTEQA 326 >gi|300774925|ref|ZP_07084788.1| transcription termination factor NusA [Chryseobacterium gleum ATCC 35910] gi|300506740|gb|EFK37875.1| transcription termination factor NusA [Chryseobacterium gleum ATCC 35910] Length = 411 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 204/344 (59%), Gaps = 6/344 (1%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYT 76 EK I + +++++ DS++ R + + V +NP+ GD +F +VE+ E+ Sbjct: 16 EKGISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFLNKTIVEDEMSEDDD 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + A+ DP+ ++G + +P GR + + KQ++ K++E Y +F+D Sbjct: 76 LEIEISEAKKIDPTFEVGEDFTMEIPVAQLGRRNILTLKQILATKLQEHNNAMLYEQFRD 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K+GEI+ G + + + +VI+ D GN + ++ ++ I + + G+ +++ + V + Sbjct: 136 KIGEIVVGEIHHIRHKHVILLDDEGN-EFILPKENQIPSDFFKKGENIRAIVETVDFKGS 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+AV + D IDPVGAC Sbjct: 195 KPQIIISRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVDAYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VG++GSR+ VV ELR+E ID++ WS + V AL + K+ ++E+ V P Sbjct: 255 VGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKIEINEETNYALVYTPV 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNE 357 E++S IG++GQN+RLAS LTG+ ID+ E ED K+FN+ Sbjct: 315 EEISKVIGKQGQNIRLASWLTGYEIDVYRESSEDDDVELKEFND 358 >gi|293192171|ref|ZP_06609383.1| transcription termination factor NusA [Actinomyces odontolyticus F0309] gi|292820367|gb|EFF79359.1| transcription termination factor NusA [Actinomyces odontolyticus F0309] Length = 342 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 199/334 (59%), Gaps = 25/334 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 11 VENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTVM------------ 58 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A D D + G D P +FGR+A +A+ VI+Q++R+A+ R + +F Sbjct: 59 --------AMDEDEDGNPIGEFDDT--PKNFGRIAQSTARSVIMQRLRDADDQRVFGDFA 108 Query: 136 DKVGEIISGTVKRVEYGN-VIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G+II+GTV+ G +V + + + V+ E + E+ R GDR+++Y+ V R + Sbjct: 109 GREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIRAYVVGVERTE 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV ++ I+ GA Sbjct: 169 RGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAATREGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIV 312 C+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+ D IV Sbjct: 229 CIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHSVDNRTATAIV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 P QLSLAIG+ GQN RLA++LT + IDI + E Sbjct: 289 PDFQLSLAIGKEGQNARLAARLTNYHIDIHADTE 322 >gi|226366090|ref|YP_002783873.1| transcription elongation factor NusA [Rhodococcus opacus B4] gi|226244580|dbj|BAH54928.1| transcription elongation protein NusA [Rhodococcus opacus B4] Length = 343 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 198/336 (58%), Gaps = 30/336 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I + V+S + ++ A R G R++++ ++G + R++ Sbjct: 10 AIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSG---IVRVM-------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 A D D ++ G D P FGR+A +A+QVI+Q++R+AE +R + E+ Sbjct: 59 ---------AHDVDSDGNMVGEEWDDTPE-GFGRIAATTARQVILQRLRDAEHERSFGEY 108 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 GEI+ G ++R N V+V +G+ ++G+I E + EN G+R+K Y+ Sbjct: 109 STHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYV 168 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 169 VGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQ 228 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ +V+ V+D + Sbjct: 229 GLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPEA 288 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 324 >gi|260905192|ref|ZP_05913514.1| transcription elongation protein NusA [Brevibacterium linens BL2] Length = 320 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/338 (38%), Positives = 201/338 (59%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + + E+ I D ++ ++ ++ A + G D R E++ TG++ R+L V Sbjct: 5 LSVLRIIEREREIPLDTLIELIEQALFLAYQKTEGAWPDSRAELDKSTGEV---RILAV- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E +N D +P G D P FGR+A Q+A+QVI Q++R+ E + Sbjct: 61 -EFDN-----------DDNPI----GEFDDT--PTGFGRIAAQTARQVIHQRLRDVEDES 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 FK + GEI+SGT+++ ++ VDLG+ + V+ E + E+ R G R++ YI D Sbjct: 103 VLGNFKGREGEIVSGTIQQGRDPQMVQVDLGDVEAVLPPHEQVPGESYRHGTRLRVYIAD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +G V +SRTHP + +LF E PEI +G V++ +++R+ G R KLAV ++ + Sbjct: 163 VHKGPKGTSVTVSRTHPNLVRRLFAHEAPEIADGTVEIVSLAREAGHRTKLAVRATKPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + G+C+G GSRV+AV+ EL EKIDIV +S D A F+ +AL PA +KV +LD D+ Sbjct: 223 NAKGSCIGELGSRVRAVMNELGQEKIDIVDYSDDPAKFIGHALSPAKASKVDILDPDLQE 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 IVP++QLSLAIG+ GQN RLA++LTGW IDI+ E Sbjct: 283 SRAIVPRDQLSLAIGKEGQNARLAAKLTGWKIDIVPGE 320 >gi|325954923|ref|YP_004238583.1| NusA antitermination factor [Weeksella virosa DSM 16922] gi|323437541|gb|ADX68005.1| NusA antitermination factor [Weeksella virosa DSM 16922] Length = 411 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 207/329 (62%), Gaps = 3/329 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYT 76 +K+IDR +++++ +++Q R YG+ + + +NP+ GD+ ++ VVE+ E+ + Sbjct: 16 DKNIDRITLMAIIEEALQVVLRKKYGSDDNFDIIVNPDKGDLEIWHNRIVVEDGFSEDDS 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L AR +P +IG VS+ +P + GR A+ + +Q + K+ E + Y +FK+ Sbjct: 76 AEIELSEARKIEPDFEIGEEVSELIPIENLGRRAILTLRQTLSAKIMEHDNANLYDKFKE 135 Query: 137 KVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 GEI+SG V + + ++I +D ++ ++ ++ I + R G+ V++ + +V Sbjct: 136 LEGEIVSGEVHHIRHKHIIIMDDEQNEMILPKENQIPSDFFRKGETVRAIVDEVVLRGAK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ++LSRT P+F+ KLF E+PEI++G++ +K V R PG +AK+AV S D IDPVGACV Sbjct: 196 PQIVLSRTAPKFLEKLFEQEIPEIFDGLITIKKVVRIPGEKAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ ++V ELR+E ID++ ++ + ++ AL PA ++ +DE+ +I V V E Sbjct: 256 GMKGSRIHSIVRELRNENIDVINYTTNLNLYIARALSPAKISSAEIDEENHKILVHVKPE 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++S AIG+ G NV+LAS+L IDI E Sbjct: 316 EVSKAIGKGGYNVKLASRLLDMEIDIFRE 344 >gi|24213642|ref|NP_711123.1| transcription elongation factor NusA [Leptospira interrogans serovar Lai str. 56601] gi|45658541|ref|YP_002627.1| transcription elongation factor NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194444|gb|AAN48141.1| transcription elongation factor NusA [Leptospira interrogans serovar Lai str. 56601] gi|45601784|gb|AAS71264.1| NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/447 (32%), Positives = 235/447 (52%), Gaps = 34/447 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--------TMSDIRVEINPETGDI 60 LL+ +KS+DR+ V+ V+ DS+ A + G S + VE + Sbjct: 12 LLEAIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEESSELEKPSPVTVEFASGKDSV 71 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + +VV + +ISL+ A+ D S +IG V+S P++ R+ AKQ++ Q Sbjct: 72 VIAIAKKVVSGNPSSALEISLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQMVFQ 131 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++++ E++ + E+K K GE+ G +R + + +DLG +G++ R E E GD Sbjct: 132 RLKDMEKELLFNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYHSGD 191 Query: 181 RVKSYI--YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+K+ I ++R + P + LSR F+ KLF ME+PEIY+G+V++ V+R P R K Sbjct: 192 RLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSIRTK 251 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA + Sbjct: 252 VVVRATRGDIDPVGACVGMKGVRIQSIVRELGNERIDIVESSDDASEFIANAISPAKPVE 311 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQKDFN 356 V +D V+VP +QLSLAIG G NV+LASQL G+ IDI +T+ + + Sbjct: 312 VKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVTQYNAELASPEARE 371 Query: 357 ERTQFFMQAINVDEI----------------------IAHLLVAEGFADVEELACVKISE 394 + F + ++ I +L +EG D+E L + Sbjct: 372 RLERLFYSPVEETKVSMEQEEEEELTPLEDLPGLSARIVGILKSEGIKDLETLIEYSQDD 431 Query: 395 IASIEGFDEETAVEIQGRAREYLEGID 421 +A ++G TA +I RE +E ++ Sbjct: 432 LAKLQGIGHTTAGQILKLLRESVEWVE 458 >gi|119962022|ref|YP_947326.1| transcription termination factor NusA [Arthrobacter aurescens TC1] gi|119948881|gb|ABM07792.1| transcription termination factor NusA [Arthrobacter aurescens TC1] Length = 326 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 108/244 (44%), Positives = 165/244 (67%), Gaps = 2/244 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P FGR+A +A+Q+I+Q++R+ E D EFK + GE+++G +++ ++I V+LG Sbjct: 76 PAGFGRIAASTARQIILQRLRDVEDDNVLGEFKGREGELVAGMIQQGNNPHMIQVNLGAV 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R+++++ DV R +GP + LSR+HP + KLF MEVPEI + Sbjct: 136 EALLPPPEQVPGEKYLHGSRLRAFVVDVHRGAKGPSITLSRSHPGLVRKLFEMEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V++ A++R+ G R K+AV ++ ++ GAC+G GSRV+AV+TEL DEKIDIV +S Sbjct: 196 HSVEIVALAREAGHRTKIAVKANTPGVNAKGACIGEMGSRVRAVMTELNDEKIDIVDFSD 255 Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ATF+ N+L P+ V V + DE V+VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 DPATFIANSLSPSRVNSVTITDESTRSARVVVPDYQLSLAIGKEGQNARLAAKLTGWRID 315 Query: 341 IITE 344 I+++ Sbjct: 316 IVSD 319 >gi|189501596|ref|YP_001957313.1| transcription termination factor NusA [Candidatus Amoebophilus asiaticus 5a2] gi|189497037|gb|ACE05584.1| transcription termination factor NusA [Candidatus Amoebophilus asiaticus 5a2] Length = 411 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 213/342 (62%), Gaps = 8/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L++ A K++DR V+ ++ + + +GT + + IN + GD+ ++R E Sbjct: 5 KLIETFAEFARSKNVDRPTVIRILEEVFKAMIHKKFGTDDNFDIIINLDQGDLQIWRFRE 64 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E++ ++ +ISL A+ + +IG VS+ + FGR A+ +A+Q +IQKV+ Sbjct: 65 VVDDNSEDIWDHD-KISLSEAKKIEEDFNIGEEVSEEISVDSFGRRAITAARQTLIQKVK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 + E+D YL++ +GE+I+ V ++ VI VD + + + E I ++ + G+ + Sbjct: 124 DLEKDALYLKYTQLIGEMITVEVHQILPQEVILVDEERKELFLPKSEQIFKDIFKKGEYI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ ++ + ++ P+V+LSRT P F+ +LF EVPEI++GI+ +K V R+PG RAK+AV Sbjct: 184 RAVVHRIDLQKSTPKVILSRTSPIFLERLFESEVPEIFDGIITIKKVVREPGERAKVAVE 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG++GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + + Sbjct: 244 SLDDRIDPVGACVGIKGSRIHSIVRELQNENIDVINYTDNLELYISRALSPAKISSIQMK 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 D R+ V + +Q+SLAIG+ GQN++LAS+L ID+ E Sbjct: 304 GD--RVAVYLKPDQVSLAIGKGGQNIKLASRLVDREIDVYRE 343 >gi|116669975|ref|YP_830908.1| NusA antitermination factor [Arthrobacter sp. FB24] gi|116610084|gb|ABK02808.1| NusA antitermination factor [Arthrobacter sp. FB24] Length = 326 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 108/244 (44%), Positives = 169/244 (69%), Gaps = 2/244 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P FGR+A +A+Q+I+Q++R+AE D +FK + GE+++GT+++ ++I V+LG Sbjct: 76 PAGFGRIAASTARQIILQRLRDAEDDNVLGQFKGREGELVAGTIQQGNNPHMIQVNLGTV 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G+R+++++ DV R +GP + LSR+HP + KLF +EVPEI + Sbjct: 136 EALLPPPEQVPGEKYIHGNRLRAFVIDVHRGTKGPSITLSRSHPGLVRKLFELEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V++ A++R+ G R K+AV ++ I+ GAC+G GSRV+AV+TEL DEKIDIV +S Sbjct: 196 RSVEIVALAREAGHRTKIAVKANIPGINAKGACIGEMGSRVRAVMTELNDEKIDIVDFSE 255 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ATF+ +AL P+ V V + ++ R V+VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 DPATFIASALSPSRVNSVTITDEATRSARVVVPDYQLSLAIGKEGQNARLAAKLTGWRID 315 Query: 341 IITE 344 I+++ Sbjct: 316 IVSD 319 >gi|116328714|ref|YP_798434.1| transcription elongation factor NusA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330628|ref|YP_800346.1| transcription elongation factor NusA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121458|gb|ABJ79501.1| Transcription elongation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124317|gb|ABJ75588.1| Transcription elongation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 462 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 148/449 (32%), Positives = 237/449 (52%), Gaps = 36/449 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTMSDIRVEINPET 57 LL++ +KS+DR+ V+ V+ DS+ A + S + VE Sbjct: 12 LLEVIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEGLEEFEESEKPSPVTVEFASGK 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + +VVE + +I L+ A+ D S +IG V+S P++ R+ AKQ+ Sbjct: 72 DSVVIAIAKKVVEGTPSSALEIGLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQM 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 + Q++++ E++ Y E+K K GE+ G +R + + +DLG +G++ R E E Sbjct: 132 VFQRLKDMEKELLYNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYH 191 Query: 178 PGDRVKSYI--YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 GDR+K+ I ++R + P + LSR F+ KLF ME+PEIY+G+V++ V+R P Sbjct: 192 SGDRLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSI 251 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R K+ V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA Sbjct: 252 RTKVVVRATRGEIDPVGACVGMKGVRIQSIVRELGNERIDIVEASDDASEFIANAISPAK 311 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-EEEDSINRQKD 354 +V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T + ++ + Sbjct: 312 PVEVKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVAQYNAELASPE 371 Query: 355 FNERTQ--FFMQA--------------------INVDEIIAHLLVAEGFADVEELACVKI 392 ER + F+ A + I +L +EG D+E L Sbjct: 372 ARERLERLFYSPAEEAKVAAPQEEEELTPLEDLPGLSARIVGILKSEGIKDLETLIEYSQ 431 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGID 421 ++A ++G TA +I RE +E ++ Sbjct: 432 DDLAKLQGIGHTTAGQILKLLRESVEWVE 460 >gi|86131975|ref|ZP_01050571.1| transcription elongation protein NusA [Dokdonia donghaensis MED134] gi|85817309|gb|EAQ38489.1| transcription elongation protein NusA [Dokdonia donghaensis MED134] Length = 410 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 203/335 (60%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ + + + +G+ + + INP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIWRNRVVVADGEVEDDN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR + ++G VS+ + +D GR ++ + +Q +I K+ E + Y +FK+ Sbjct: 76 EEISLTDARKIEEDFEVGEDVSEEVKLIDLGRRSILALRQNLISKIHEHDNTNIYKQFKE 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 G++ + V + + +I+ D GN + ++ +D I + R G+ V+ I V + Sbjct: 136 LEGDLYTAEVHHIRHRAIILLDDDGN-EIILPKDRQIPSDFFRKGENVRGVIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + +DE+ + ++ Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIKIDEENKTAQAVLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEED 349 >gi|108799047|ref|YP_639244.1| transcription elongation factor NusA [Mycobacterium sp. MCS] gi|119868162|ref|YP_938114.1| transcription elongation factor NusA [Mycobacterium sp. KMS] gi|126434650|ref|YP_001070341.1| transcription elongation factor NusA [Mycobacterium sp. JLS] gi|108769466|gb|ABG08188.1| NusA antitermination factor [Mycobacterium sp. MCS] gi|119694251|gb|ABL91324.1| NusA antitermination factor [Mycobacterium sp. KMS] gi|126234450|gb|ABN97850.1| NusA antitermination factor [Mycobacterium sp. JLS] Length = 347 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/336 (38%), Positives = 194/336 (57%), Gaps = 31/336 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ +K I DVV+ + ++ A R G +D R++I+ ++G + + Sbjct: 10 AIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVM----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 AR+ D ++ D P FGR+A +A+QVI+Q++R+AE ++ Y EF Sbjct: 59 ---------ARETDADGNLIQEWDDT--PEGFGRIAATTARQVILQRLRDAENEKNYGEF 107 Query: 135 KDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 + G+I++G ++R N V+V +G+ ++GVI E + E GDR++ Y+ Sbjct: 108 SAREGDIVAGVIQRDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R R P + LSRTHP + KLF +EVPEI +G V + AV+R+ G R+K+AV S Sbjct: 168 VGVTRGAREPLITLSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVP 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+DE Sbjct: 228 GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQT 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|154509097|ref|ZP_02044739.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC 17982] gi|153798731|gb|EDN81151.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC 17982] Length = 342 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 199/334 (59%), Gaps = 25/334 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 11 VENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTVM------------ 58 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A D D + G D P +FGR+A +A+ VI+Q++R+A+ R + +F Sbjct: 59 --------AMDEDEDGNPIGEFDDT--PKNFGRIAQSTARSVIMQRLRDADDQRVFGDFA 108 Query: 136 DKVGEIISGTVKRVEYGN-VIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G+II+GTV+ G +V + + + V+ E + E+ R GDR+++Y+ V R + Sbjct: 109 GREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIRAYVVGVERTE 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV ++ I+ GA Sbjct: 169 RGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAATREGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIV 312 C+G G+RV++V+ +L EKIDIV +S D A FV N+L PA VT+VV+ D IV Sbjct: 229 CIGPMGARVRSVMADLGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHSVDNRTATAIV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 P QLSLAIG+ GQN RLA++LT + IDI + E Sbjct: 289 PDFQLSLAIGKEGQNARLAARLTNYHIDIHADTE 322 >gi|205373420|ref|ZP_03226224.1| transcription elongation factor NusA [Bacillus coahuilensis m4-4] Length = 286 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 104/267 (38%), Positives = 176/267 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I RD+++ + ++ A + + ++RV+++ E G I +F E Sbjct: 4 ELLDALDYLEKEKGIARDILIDAIEAALVSAYKRNFNQAQNVRVDLHQENGTIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V++V + +IS++ A+ P ++G +V + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 IVDQVFDPRLEISIEDAKQIHPGYEVGDIVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ E + E+ +P DR+K ++ Sbjct: 124 GIIYSEFIDREEDIMTGIVQRLDNRYIYVALGKIEALLPISEQMPNESYKPHDRIKVFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEI++G V++K+VSR+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIFDGTVEIKSVSREAGDRSKISVHAENPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKI 274 +DPVGACVG +G+RVQA+V EL+ EK+ Sbjct: 244 VDPVGACVGSKGTRVQAIVNELKGEKL 270 >gi|167751252|ref|ZP_02423379.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702] gi|167655759|gb|EDR99888.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702] gi|291556761|emb|CBL33878.1| transcription termination factor NusA [Eubacterium siraeum V10Sc8a] Length = 370 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 202/348 (58%), Gaps = 4/348 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLR 177 Q ++E ER++ ++ E ++ TV + E GN V+L ++ + R E I E LR Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+ Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPE 348 >gi|320094043|ref|ZP_08025865.1| transcription termination factor NusA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979022|gb|EFW10543.1| transcription termination factor NusA [Actinomyces sp. oral taxon 178 str. F0338] Length = 342 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 203/334 (60%), Gaps = 25/334 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V EK + D ++ + +++ KA ++ G +S+ R+EI+ +TG +++ Sbjct: 11 VETEKGVSLDTLVDAIEEALLKAYHNIPGAISEARIEIDKKTGRVTV------------- 57 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +A D D + G D P +FGR+A +A+ VI+ ++R+A+ R + +F Sbjct: 58 -------MAVDEDEDGNPIGEFDDT--PKNFGRIAQATARSVIMARLRDADDQRVFGDFA 108 Query: 136 DKVGEIISGTVKRVEYGNVI-VDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G+II+GTV++ G++ V + + + V+ E + E R GDR+++++ V R + Sbjct: 109 GREGQIITGTVQQSRDGHLTRVQISDDFEAVLPDSEKVPGEAYRHGDRIRAFVVGVERTE 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 RGP+V LSRTHP + LF EVPEI G+V+++A++R+ G R K+AV ++ I+ GA Sbjct: 169 RGPRVTLSRTHPGLVECLFEREVPEIQQGLVRIRAIAREAGHRTKIAVAATREGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIV 312 C+G G+RV+AV+TEL EKIDIV +S D A FV NAL PA VT+VV+ D IV Sbjct: 229 CIGPVGARVRAVMTELGGEKIDIVDYSDDPARFVANALSPARVTRVVVHSVDNRTATAIV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 P QLSLAIG+ GQN RLA++LT + IDI ++ E Sbjct: 289 PDFQLSLAIGKEGQNARLAARLTNFHIDIHSDTE 322 >gi|311744143|ref|ZP_07717949.1| transcription termination factor NusA [Aeromicrobium marinum DSM 15272] gi|311313273|gb|EFQ83184.1| transcription termination factor NusA [Aeromicrobium marinum DSM 15272] Length = 332 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 18/331 (5%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRLLEVVEEVENYTCQ 78 ++D+ V+ ++I++A S Y D RVE++ + G + ++ + E Sbjct: 14 EKDLSFDVVVEAIEQALLSAYHKTPDAHGHARVELDRKNGHVVVWAAERLPVEPTEEQPH 73 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + D + P DFGR A A+QVI+Q++REAE +++Y EF +V Sbjct: 74 PPAAWSEEFDDT------------PEDFGRFAAAIARQVIMQRLREAEDEQKYGEFSGRV 121 Query: 139 GEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I+SG +++ G+V++DLG + ++ E ++ E G+R+K+Y+Y+V + RGP+ Sbjct: 122 GDIVSGVIQQGRSPGDVMIDLGRVEAILPSAERVAEEKYAHGERIKAYVYEVEKGLRGPR 181 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V +SRTHP + LF +EVPEI + V++ AV+R+ G R K+AV + ++ GAC+G Sbjct: 182 VKVSRTHPNLVRLLFALEVPEIADHSVEIVAVAREAGHRTKIAVRARVPGVNAKGACIGP 241 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G+RV+ V+ EL EKIDIV S D A F+ AL P+ VT V V+DE V+VP Q Sbjct: 242 LGARVRNVMHELHGEKIDIVDHSDDPAEFIGYALSPSRVTSVTVVDEATRSARVVVPDFQ 301 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 LSLAIG+ GQN RLA++LTGW IDI ++ D Sbjct: 302 LSLAIGKEGQNARLAAKLTGWRIDIRSDTGD 332 >gi|15827820|ref|NP_302083.1| transcription elongation factor NusA [Mycobacterium leprae TN] gi|221230297|ref|YP_002503713.1| transcription elongation factor NusA [Mycobacterium leprae Br4923] gi|20139308|sp|Q9Z5J1|NUSA_MYCLE RecName: Full=Transcription elongation protein nusA gi|4455676|emb|CAB36568.1| putative transcriptional termination/antitermination factor [Mycobacterium leprae] gi|13093372|emb|CAC30509.1| probable transcription termination/antitermination factor [Mycobacterium leprae] gi|219933404|emb|CAR71653.1| probable transcription termination/antitermination factor [Mycobacterium leprae Br4923] Length = 347 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 202/346 (58%), Gaps = 37/346 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 + I A + +DR + ++ + D+I+ A + Y G D R++I+ +TG + + Sbjct: 1 MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVRE 124 +AR+ D D G V+S+ P FGR+A +A+QV++Q+ R+ Sbjct: 58 -----------------IAREVD---DDGNVISEWDDTPEGFGRIAATTARQVMLQRFRD 97 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENL 176 AE +R Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESY 157 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+R++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ +V+R+ G R Sbjct: 158 EHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHR 217 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V Sbjct: 218 SKIAVASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKV 277 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 278 VSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|255536444|ref|YP_003096815.1| transcription elongation factor NusA [Flavobacteriaceae bacterium 3519-10] gi|255342640|gb|ACU08753.1| Transcription termination protein NusA [Flavobacteriaceae bacterium 3519-10] Length = 415 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 202/338 (59%), Gaps = 3/338 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L L++ EKSI + +++++ DS++ R + + V +NP+ GD +F Sbjct: 4 LALIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFLNK 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VE+ E+ +I + A+ DP+ ++G + +P GR ++ + KQ++ K++E Sbjct: 64 TIVEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATKLQE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVK 183 Y EF+DK+GEI+ G V + + +VI+ D +++ ++ ++ I + + G+ ++ Sbjct: 124 HNNAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGENIR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+AV + Sbjct: 184 TIVESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVDA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVG++GSR+ VV EL++E ID++ WS + V AL V K+ ++E Sbjct: 244 YDDRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIEINE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V P E++S IG++GQN+RLAS L+G+ ID+ Sbjct: 304 ETKYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDV 341 >gi|329947836|ref|ZP_08294768.1| transcription termination factor NusA [Actinomyces sp. oral taxon 170 str. F0386] gi|328523460|gb|EGF50558.1| transcription termination factor NusA [Actinomyces sp. oral taxon 170 str. F0386] Length = 346 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 145/346 (41%), Positives = 201/346 (58%), Gaps = 30/346 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL AD E ID D +L + D+I A + G + VEI+ TG +S+ Sbjct: 4 NMPELRGAAD----ELGIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSV-- 57 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +V D P+ G D P DFGR+A +A+ VI+Q++++ Sbjct: 58 --------------LAPEVDEDDQPT---GEYFDDT--PDDFGRIAQATARSVIVQRIQD 98 Query: 125 AERDRQYL-EFKDKVGEIISGTVKRVEYGNVI-VDLGN-SDGVIRRDETISRENLRPGDR 181 RD + L FKDK GE+ISGTV++ ++ V L +G++ E + E+ R GDR Sbjct: 99 -RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGESYRHGDR 157 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+AV Sbjct: 158 VRAYVTDVSRGTRGAQIVLSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKMAV 217 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V V Sbjct: 218 RSKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAVGV 277 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 278 IDAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAE 323 >gi|183601974|ref|ZP_02963343.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis HN019] gi|219682886|ref|YP_002469269.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis AD011] gi|241190463|ref|YP_002967857.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195869|ref|YP_002969424.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218859|gb|EDT89501.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis HN019] gi|219620536|gb|ACL28693.1| N utilization substance-like protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248855|gb|ACS45795.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250423|gb|ACS47362.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178187|gb|ADC85433.1| N utilization substance protein A [Bifidobacterium animalis subsp. lactis BB-12] gi|295793450|gb|ADG32985.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis V9] Length = 358 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 198/330 (60%), Gaps = 15/330 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+A E+ ID + V + ++++++ A + RVE++P G +++ E+ +E Sbjct: 10 ALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWARDEIPQE--- 66 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + P+ ++G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 67 -------PTEDNPHPAPELGEEYDDT--PHDFGRLAASTARQVIQQLFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ V R Sbjct: 118 SGQRGKLITGVVQQDVKDPANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVTTVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ I+P G Sbjct: 178 LKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPGINPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDI+ WS + A F+ AL PA+V+ V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + EQLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 INDEQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|332292194|ref|YP_004430803.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5] gi|332170280|gb|AEE19535.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5] Length = 410 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 202/335 (60%), Gaps = 7/335 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 +K IDR +++++ + + + +G+ + + INP+ GD+ ++R VV EVE+ Sbjct: 16 DKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIWRNRVVVADGEVEDDN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +ISL AR + ++G VS+ + D GR ++ + +Q +I K+ E + Y +FK+ Sbjct: 76 EEISLTDARKIEEDFEVGEDVSEEVKLFDLGRRSILALRQNLISKIHEHDNTNIYKQFKE 135 Query: 137 KVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GE+ + V + + +I+ D GN + ++ +D I + R G+ V+ I V + Sbjct: 136 LEGELYTAEVHHIRHRAIILLDDDGN-EIILPKDRQIPSDFFRKGENVRGVIESVELKGN 194 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV S D IDPVGAC Sbjct: 195 KPSIVMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVAVDSYDDRIDPVGAC 254 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 VGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + ++E+ + ++ Sbjct: 255 VGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIKINEENKTAQAVLKP 314 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 E++S AIGR G N+RLA QLTG+ ID+ E EED Sbjct: 315 EEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEED 349 >gi|184201252|ref|YP_001855459.1| transcription elongation protein NusA [Kocuria rhizophila DC2201] gi|183581482|dbj|BAG29953.1| transcription elongation protein NusA [Kocuria rhizophila DC2201] Length = 325 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 196/331 (59%), Gaps = 34/331 (10%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +RD+ + V+ +I++A Y G + R E+ TG ++++ E++ + Sbjct: 14 ERDIPVDVLIPTIEQALLLAYMRSPGAIDGARAEVERRTGHVTIW-----APELDEQDQR 68 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I G D P FGR+A +A+QVI+QK+R+ E D FK + Sbjct: 69 I---------------GEFDDT--PSGFGRIAAATARQVILQKLRDVEDDNVLGHFKGRE 111 Query: 139 GEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 GE++SG +++ GN V V+LG +G++ E + E R GDR+++++ + +R + Sbjct: 112 GELVSG---QIQQGNNPRMVQVNLGTVEGLLPPHEQVPGETYRHGDRIRAFVVEAKRGFK 168 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP + LSR+HP + +LF MEVPEI +G V++ ++R+ G R K+AV + + GAC Sbjct: 169 GPSITLSRSHPDLVRRLFEMEVPEIADGSVEIVTLAREAGHRTKMAVEARRPGANAKGAC 228 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G GSRV+AV+ EL +EKIDI+ +S D A F+ NAL PA V++VV+ +D R +VP Sbjct: 229 IGDMGSRVRAVMNELGEEKIDIIDFSQDPAEFIGNALSPARVSRVVVLDDAARSARAVVP 288 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 QLSLAIG+ GQN RLA++LTGW IDI+ E Sbjct: 289 DSQLSLAIGKEGQNARLAARLTGWKIDIVPE 319 >gi|223984472|ref|ZP_03634605.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM 12042] gi|223963543|gb|EEF67922.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM 12042] Length = 571 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 210/341 (61%), Gaps = 5/341 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISL 62 N E L+ + ++ I +++V++ + +++ KA R + + D+ RV+IN G I + Sbjct: 2 NFKEFLKAMQTIEDDRKITKEIVIAALQEALAKAYRK-HIDIPDVLVRVDINEANGQIHV 60 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++ VVEEVE+ +++L A +D +G +V + GR A AK V+ QK+ Sbjct: 61 YQQYTVVEEVEDEELEVAL--ADVKDKGYQLGDLVDHEVDISQIGRAAALLAKNVMKQKI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 REAE+ Y E+ D++ E+++G ++ VE V+V+LG + ++ R I E G + Sbjct: 119 REAEKQAVYDEYIDQLDEMVTGMIESVEEKFVVVNLGKTMALMPRAAQIPGERYVEGQSI 178 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I + ++ +G QVL+SR+ + + +LF EVPEIY G+V++KA++R+ G R K+AV+ Sbjct: 179 RVVITECNKDTKGAQVLVSRSDAKLVKRLFEKEVPEIYQGVVEIKAIAREAGERTKMAVW 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S++ +D +GAC+G RGSRVQ V+ EL+ EKIDI WS + + + NAL PA + V+ Sbjct: 239 SNNPDVDAIGACIGPRGSRVQVVIDELKGEKIDIFEWSDNISELIKNALAPAQILAVLPT 298 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 ED + V+V QLSLAIG++G+N RLA +LTG IDI T Sbjct: 299 EDKRSLLVVVEDNQLSLAIGKKGKNARLAVKLTGMRIDIKT 339 >gi|320531905|ref|ZP_08032815.1| transcription termination factor NusA [Actinomyces sp. oral taxon 171 str. F0337] gi|320135874|gb|EFW27912.1| transcription termination factor NusA [Actinomyces sp. oral taxon 171 str. F0337] Length = 346 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 145/346 (41%), Positives = 200/346 (57%), Gaps = 30/346 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL AD E ID D +L + D+I A + G + VEI+ TG +S+ Sbjct: 4 NMPELRGAAD----ELGIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSV-- 57 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +V D P+ G D P DFGR+A +A+ VI+Q++++ Sbjct: 58 --------------LAPEVDDDDQPT---GEYFDDT--PDDFGRIAQATARSVIVQRIQD 98 Query: 125 AERDRQYL-EFKDKVGEIISGTVKRVEYGNVI-VDLGN-SDGVIRRDETISRENLRPGDR 181 RD + L FKDK GE+ISGTV++ ++ V L +G++ E + E R GDR Sbjct: 99 -RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPAERYRHGDR 157 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+AV Sbjct: 158 VRAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKMAV 217 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V V Sbjct: 218 RSKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAVGV 277 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 278 IDAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAE 323 >gi|124002855|ref|ZP_01687707.1| transcription termination factor NusA [Microscilla marina ATCC 23134] gi|123992083|gb|EAY31470.1| transcription termination factor NusA [Microscilla marina ATCC 23134] Length = 423 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 205/333 (61%), Gaps = 10/333 (3%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A K+ID+ ++ V+ + + R Y + + V +N E GD+ ++R +VE+ ++ Sbjct: 14 ARAKNIDKVLMEQVLEEVFRTMIRKKYTSDENFDVIVNIEDGDLEMYRNRIIVED-DSPE 72 Query: 77 CQ----ISLKVARDRDPSI---DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 Q ++L A+ DP I DIG + DFGR A+ +A+Q +IQK+++ E++ Sbjct: 73 AQELDKVTLSEAKKIDPEIAEEDIGDEFPQTVYLSDFGRRAILTARQTLIQKIKDVEKEN 132 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 YL++KD EI+ V ++ +++ D ++ + ++E I ++ R G+ K+ ++ Sbjct: 133 LYLKYKDMTDEIVVTEVHQILSRELLLLDSEGNELSLPKNELIPKDRYRKGEMSKAVVHR 192 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V P+++LSRT P F+ +LF E+PE+Y+G++ +K V R PG RAK+AV S D I Sbjct: 193 VDMINGNPKIILSRTSPIFLERLFESEIPEVYDGLITIKKVVRQPGERAKVAVESYDDRI 252 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGM+GSR+ ++V EL +E ID++ ++ + ++ AL PA +T + +++D GR+ Sbjct: 253 DPVGACVGMKGSRIHSIVRELNNENIDVINYTDNLDLYITRALSPAKITSIKMEDD-GRV 311 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + +Q+SLAIG+ G N++LAS+L G ID+ Sbjct: 312 SVFLKPDQVSLAIGKGGHNIKLASKLVGMEIDV 344 >gi|325067076|ref|ZP_08125749.1| NusA antitermination factor [Actinomyces oris K20] gi|326771738|ref|ZP_08231023.1| transcription termination factor NusA [Actinomyces viscosus C505] gi|326637871|gb|EGE38772.1| transcription termination factor NusA [Actinomyces viscosus C505] Length = 346 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 143/346 (41%), Positives = 199/346 (57%), Gaps = 30/346 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL AD E ID D +L + D+I A + G + VEI+ TG +S+ Sbjct: 4 NMPELRGAAD----ELGIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSV-- 57 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L V+E + T + P DFGR+A +A+ VI+Q++++ Sbjct: 58 LAPEVDEEDQPTGEYFDDT-------------------PDDFGRIAQATARSVIVQRIQD 98 Query: 125 AERDRQYL-EFKDKVGEIISGTVKRVEYGNVI-VDLGN-SDGVIRRDETISRENLRPGDR 181 RD + L FKDK GE+ISGTV++ ++ V L +G++ E + E R GDR Sbjct: 99 -RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHGDR 157 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ DV R RG Q++LSRTHP + KLF EVPE+ +G V++ +V+R+ G R K+AV Sbjct: 158 VRAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPELSSGDVEIVSVAREAGHRTKMAV 217 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+AV+TEL EKIDIV +S D A F+ NAL PA V V V Sbjct: 218 RSKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDYSEDPARFIANALSPARVAAVGV 277 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 278 IDAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAE 323 >gi|291531685|emb|CBK97270.1| transcription termination factor NusA [Eubacterium siraeum 70/3] Length = 370 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 202/348 (58%), Gaps = 4/348 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLR 177 Q ++E ER++ ++ E ++ TV + E GN V+L ++ + R E I E L+ Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+ Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPE 348 >gi|308176799|ref|YP_003916205.1| transcription elongation protein NusA [Arthrobacter arilaitensis Re117] gi|307744262|emb|CBT75234.1| transcription elongation protein NusA [Arthrobacter arilaitensis Re117] Length = 327 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 189/327 (57%), Gaps = 28/327 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 DRD+ + V+ +I+ A Y G M R I G +++ Sbjct: 14 DRDIPMDVLIPTIESALLLAYNKTEGAMPGARAHIERSNGHVAIL--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 DRD + + G D P FGR+A +A+QVI+Q++REAE + E+ +V Sbjct: 59 -----VEDRDNAGVLLGEFDDT--PHGFGRIAASTARQVIMQRLREAEDAQVVGEYAARV 111 Query: 139 GEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G +ISG +++ +++ V +G+ + ++ E E + G+R+++Y+ R +GP Sbjct: 112 GTLISGVIQQGYSSHMVQVKIGDLEALLPPVEQSPGEKYQHGNRLRAYVVSAERGNKGPA 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSR+HP + LF MEVPEI +G V V+A++R+ G R K+AV ++ + ++ GAC+G Sbjct: 172 VTLSRSHPNLVRLLFEMEVPEIADGTVAVEALAREAGHRTKIAVHATKAGVNAKGACIGE 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G+RV+AV+ EL DEKIDIV ++ D A F+ AL P+ V V +LD + R V+VP Q Sbjct: 232 MGTRVRAVMNELNDEKIDIVDYNEDPAKFIAAALSPSKVISVEILDAEERRARVVVPDSQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIIT 343 LSLAIG+ GQN RLA++LTGW IDI+ Sbjct: 292 LSLAIGKEGQNARLAAKLTGWRIDILA 318 >gi|86609687|ref|YP_478449.1| transcription elongation factor NusA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558229|gb|ABD03186.1| transcription termination factor NusA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/341 (39%), Positives = 195/341 (57%), Gaps = 30/341 (8%) Query: 18 YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 Y K+I RDVV + + VE++ E G + +VE+V+N Sbjct: 42 YRKTIQRDVVFA-------------EDHFRNFDVELDVEAGGFRVLATKAIVEQVQNPDH 88 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +ISL + P ++G V+D + P +FGR+A KQV+ QK+R+ +R EF+ Sbjct: 89 EISLYDVQQDYPEAEVGWEVTDDVTPQQAEFGRMAAIQTKQVLAQKLRDQQRRLIQEEFR 148 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETISRENLRPGDRVKSYIYDV 189 D ++ V R E VI+ + + G + + E ++ + P +K Y+ V Sbjct: 149 DLEKTVLQARVLRTERQTVIMSVSSGFGQPEVEAELPKKEQLASDRYTPNAVMKVYLKKV 208 Query: 190 RR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV-------SRDPGSRAKLAV 241 +RGPQ+L+SR +V LF EVPEI IV++ AV SR+ G R K+AV Sbjct: 209 YEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVAVAREANPPSRNVGPRTKIAV 268 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSPD AT++ NAL PA V +V L Sbjct: 269 DTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSPDPATYIANALSPAKVVEVRL 328 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 329 VDPEIQQAHVLVNSDQLSLAIGKEGQNVRLAARLTGWKIDI 369 >gi|309811468|ref|ZP_07705250.1| transcription termination factor NusA [Dermacoccus sp. Ellin185] gi|308434519|gb|EFP58369.1| transcription termination factor NusA [Dermacoccus sp. Ellin185] Length = 339 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/334 (38%), Positives = 197/334 (58%), Gaps = 28/334 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ I DV++ + ++ A + G+ RVE++ TG + ++ E E+ E+ Sbjct: 10 ALEREREIPMDVIVPAIEQALLLAYQKEEGSYRRARVELDRRTGHVVVW-AREDGEKQED 68 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVREAERDR 129 G S+P P P +FGRVA +A+QVI+Q++R+ E + Sbjct: 69 --------------------GTWSEPGPEFDDTPKNFGRVAAGTARQVIMQRMRDVEDEA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +F K G+I+SGT+++ ++ V VD G +G++ E + E R G+R++ Y+ Sbjct: 109 ILGDFIGKEGDIVSGTIQQSLDSRFVKVDFGTVEGILPTAEQVPGETYRHGERLRCYVVS 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR +GPQ+ LSRTHP + KLF MEVPEI +G V++ A++R+ G R K+AV ++ I Sbjct: 169 VRRGPKGPQISLSRTHPNLVRKLFAMEVPEIADGSVEIAALAREAGHRTKIAVHATKPGI 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+AV++EL+ EKIDIV +S F+ AL P+ V V V+D Sbjct: 229 NAKGACIGPMGQRVRAVMSELQGEKIDIVDYSRQPDEFIAAALSPSRVESVEVVDPKARA 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 ARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDI 322 >gi|17231321|ref|NP_487869.1| transcription elongation factor NusA [Nostoc sp. PCC 7120] gi|17132963|dbj|BAB75528.1| transcription termination factor [Nostoc sp. PCC 7120] Length = 425 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/299 (43%), Positives = 183/299 (61%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV N QISL + P +G VV D P +FGR+A KQV Sbjct: 72 FRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D G ++ V R E +VI+ + ++ G + + E + Sbjct: 132 LAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|295395322|ref|ZP_06805525.1| transcription termination factor NusA [Brevibacterium mcbrellneri ATCC 49030] gi|294971825|gb|EFG47697.1| transcription termination factor NusA [Brevibacterium mcbrellneri ATCC 49030] Length = 320 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 194/326 (59%), Gaps = 28/326 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +R++ + V+ D I++A Y G D R E++ +TG +++ Sbjct: 14 EREIPMKVLVDLIEQALLIAYQRTEGYYPDARAELDTKTGKATIW--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ D +P G D P FGR+A Q+A+ VI Q++R+ E + FK+ Sbjct: 59 -AVEFDDDDNPI----GEFDDT--PEGFGRIAAQTARNVIHQRLRDVEDESVLGSFKNHE 111 Query: 139 GEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 GEI+SG +++ +Y +++ V+LG+ + V+ E + E G R++ YI DV + Q+GP Sbjct: 112 GEIVSGVIQQGKYEDMVQVNLGDVEAVLPPHEQVPGETYEHGRRIRVYITDVHKGQKGPS 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V +SR+HP + KLF EVPEI +G V++ +++R+ G R K+AV + ++ GAC+G Sbjct: 172 VTVSRSHPNLVRKLFAHEVPEIADGQVELVSLAREAGHRTKIAVAAKVPGLNAKGACIGE 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G+RV+AV+ EL +EKIDIV ++ + A FV NAL PA KV V+DE VP +Q Sbjct: 232 YGTRVRAVMGELGEEKIDIVDYNENPAKFVANALSPAKAAKVEVIDESAKMARAFVPNDQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII 342 LSLAIG+ GQN RLA++LTGW IDI+ Sbjct: 292 LSLAIGKEGQNARLAAKLTGWKIDIV 317 >gi|228473549|ref|ZP_04058301.1| transcription termination factor NusA [Capnocytophaga gingivalis ATCC 33624] gi|228274921|gb|EEK13731.1| transcription termination factor NusA [Capnocytophaga gingivalis ATCC 33624] Length = 411 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 213/349 (61%), Gaps = 7/349 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 E + + Y +FK+ +G I + + ++ VI+ D GN + ++ RD+ I + + G+ Sbjct: 123 HEYDNNTVYKKFKELIGTIYTAEIHHIKGKTVILLDDEGN-EILLPRDKQIPSDFFKKGE 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+A Sbjct: 182 TTKGIIESVDFKGNKPSIILSRTSPVFLERLFEQEIPEIADGLITIQKVARIPGEKAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVG+ G+R++++V EL +E ID++ +S ++ F+ AL PA +T + Sbjct: 242 VDTYDDRIDPVGACVGVNGARIRSIVRELGNENIDVISYSSNTNLFISKALAPAKITSIT 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 ++E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E EED Sbjct: 302 VNEETKRAEVLLASEEVSKAIGKGGSNIRLASLLTGYEIDVFREGAEED 350 >gi|229496539|ref|ZP_04390253.1| transcription termination factor NusA [Porphyromonas endodontalis ATCC 35406] gi|229316436|gb|EEN82355.1| transcription termination factor NusA [Porphyromonas endodontalis ATCC 35406] Length = 455 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/422 (33%), Positives = 246/422 (58%), Gaps = 25/422 (5%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID++ +++V+ + ++GT + + ++PE GD+ ++R VV + V+N Sbjct: 21 KNIDKETLINVLKSAFMSVLSKMFGTDENFTIIVSPEMGDLEIWRNRMVVADGSVQNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A DP +IG V+D + FGR A+ + +Q + KV E +++ Y +F+++ Sbjct: 81 EISLSDALPLDPDAEIGSEVTDSINFASFGRRAILNLRQALQGKVLELQKENLYKKFQER 140 Query: 138 VGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+++S V +V + ++VD ++ ++ + E I + R G+ V + I V E Sbjct: 141 VGQMVSAEVYQVWKREALLVDDEGNELLLPKSEQIPGDYFRKGESVHAVIDHVDYENNNI 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ +SRT +F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIYVSRTSQEFLKRLFELNVPEIGDGLITIKRVARIPGERAKMAVESYDDRIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKE 315 M GSR++ +V EL+ E ID++ ++ +S+ FV AL PA V+ + +L E++ + EV + E Sbjct: 261 MNGSRIRGIVRELKGENIDVMSYTTNSSLFVQRALSPAKVSSIEILPEEL-KAEVYLSPE 319 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD-----FNERTQFFM------- 363 ++ +AIG+ N++LAS LTG+ I++ + E+ N ++D FN+ + ++ Sbjct: 320 EVPMAIGKNASNIKLASALTGYKIEVFRDIEE--NDEEDIFLNEFNDEIEDWVLEVLKNI 377 Query: 364 ---QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 A++V I L+++ AD+EE + E+ S E FD E I A E E + Sbjct: 378 GCNTALSVLRIPRAELISK--ADLEESTVDHVLEVLSSE-FDPEELERIGFTAPEATEEV 434 Query: 421 DI 422 +I Sbjct: 435 EI 436 >gi|325962805|ref|YP_004240711.1| transcription termination factor NusA [Arthrobacter phenanthrenivorans Sphe3] gi|323468892|gb|ADX72577.1| transcription termination factor NusA [Arthrobacter phenanthrenivorans Sphe3] Length = 326 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 168/244 (68%), Gaps = 2/244 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P FGR+A +A+Q+I+Q++R+ E D EFK + GE++SGT+++ ++I V+LG+ Sbjct: 76 PEGFGRIAASTARQIILQRLRDVEDDNVLGEFKGREGELVSGTIQQGNNPHMIQVNLGSV 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G+R+++ + DV R +GP V LSR+HP + KLF +EVPEI + Sbjct: 136 EALLPPPEQVPGEKYIHGNRLRALVIDVHRGSKGPSVTLSRSHPGLVRKLFELEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V++ A++R+ G R K+AV ++ I+ GAC+G GSRV+AV+TEL DEKIDIV +S Sbjct: 196 RSVEIVALAREAGHRTKIAVKANVPGINAKGACIGEMGSRVRAVMTELNDEKIDIVDFSE 255 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + ATF+ +AL P+ V V + ++ R V+VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 NPATFIASALSPSRVNSVTITDEATRSARVVVPDYQLSLAIGKEGQNARLAAKLTGWRID 315 Query: 341 IITE 344 I+++ Sbjct: 316 IVSD 319 >gi|262202085|ref|YP_003273293.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] gi|262085432|gb|ACY21400.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] Length = 340 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 31/332 (9%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +K I D V++ + ++ A R G R+++N +TG + + Sbjct: 14 DKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVM--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 A++ D + D+ D P FGR+A +A+QVI+Q++R+AE ++ + + Sbjct: 59 -----AQELDDNGDVVHEWDDT--PEGFGRIAATTARQVILQRLRDAENEKNFGDLVTHE 111 Query: 139 GEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYDVR 190 GEI+ G V++ N ++V +G+ ++G+I E + E+ GDR+K Y+ V Sbjct: 112 GEIVGGVVQQDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGDRIKCYVVGVS 171 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV + + ++ Sbjct: 172 RGARGPQITLSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAVHTGVAGLNA 231 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D Sbjct: 232 KGACIGPMGQRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVSVVDPTAKAAR 291 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 292 VVVPDYQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|119485069|ref|ZP_01619454.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106] gi|119457297|gb|EAW38422.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106] Length = 409 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 183/303 (60%), Gaps = 17/303 (5%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQS 113 E G L + L +VEEV N QISL+ R+ P +G V+ + P DFGR+A Sbjct: 68 EEGFRVLAKNLTIVEEVTNQDHQISLQDVREVAPEAQLGDTVTLDVTPEQSDFGRMAAIQ 127 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRR 167 KQV+ QK+R+ +R EFKD ++ V R E +VI+ + + G + + Sbjct: 128 TKQVLAQKLRDQQRKMIQDEFKDLESSVLQARVLRFERQSVIMSVNSGFGHQEVEAELPK 187 Query: 168 DETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + +N R + Y+ V + QRGPQ+++SR +V LF EVPEI + +V++ Sbjct: 188 REQLPNDNYRANATFRVYLKRVSQGSQRGPQLIVSRADAGLVVYLFANEVPEIEDEVVRI 247 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ W Sbjct: 248 VAVAREANPPSTHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRW 307 Query: 280 SPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 SPD +T++ NAL PA V +V L + + R ++VP++QLSLAIG+ GQNVRLA++LTGW Sbjct: 308 SPDPSTYIANALSPARVDEVRLVNPEERRAHILVPEDQLSLAIGKEGQNVRLAARLTGWK 367 Query: 339 IDI 341 IDI Sbjct: 368 IDI 370 >gi|210634027|ref|ZP_03297945.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279] gi|210158971|gb|EEA89942.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279] Length = 427 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 200/356 (56%), Gaps = 54/356 (15%) Query: 19 EKSIDR----DVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV---VEE 71 EK ID+ D + + +A++ K + +G +V I+ +G I ++RL + ++E Sbjct: 18 EKHIDQLYLLDRLEAALAETYAKVLKLDWGA----KVTIDRASGKIYVYRLEPIDDSMDE 73 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 N+T + V P D R+A Q+AK I VR A R++ Y Sbjct: 74 EGNFTEYEEIDVT------------------PKDVSRLAAQTAKAEINAIVRNAAREQIY 115 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-------------IRRDETISRENLRP 178 EF +VG++I+GTV + IV + DGV R+E + E Sbjct: 116 EEFSGRVGDLINGTVLQSTPDFTIVKI--RDGVEAELPHFDQRRYPDERNERPNGERYLH 173 Query: 179 GDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 +K+ I DVR E P +++SRTH + M +LF EVPE+Y G V++K+ Sbjct: 174 NQHLKAVIVDVRDPNSTLPPVRGEHSRPPIVISRTHAELMRRLFEQEVPEVYEGTVELKS 233 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 ++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +V Sbjct: 234 IAREPGMRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDEDPAVYVA 293 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 294 NALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSE 349 >gi|329936656|ref|ZP_08286363.1| transcriptional termination/antitermination factor [Streptomyces griseoaurantiacus M045] gi|329303886|gb|EGG47769.1| transcriptional termination/antitermination factor [Streptomyces griseoaurantiacus M045] Length = 330 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 2/251 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGR+A +AKQVI+Q++R+AE D E+ + G+I++G V++ + NV+VD+G Sbjct: 79 PSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKL 138 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E+ + G R++SY+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 139 EAILPVQEQVPGESYQHGMRLRSYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 198 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKIDIV WS Sbjct: 199 GSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSD 258 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+ V V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 259 DPAEMVANALSPARVSAVDVVDLAARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 318 Query: 341 IITEEEDSINR 351 I + E + R Sbjct: 319 IRPDTEPAEPR 329 >gi|284030871|ref|YP_003380802.1| NusA antitermination factor [Kribbella flavida DSM 17836] gi|283810164|gb|ADB32003.1| NusA antitermination factor [Kribbella flavida DSM 17836] Length = 330 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 195/325 (60%), Gaps = 28/325 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 ++D+ V+ ++I++A Y G R E++ +TG +++F Sbjct: 14 EKDIAFEVVVEAIEQALLVAYHRTEGAQQHARAELDRKTGHVTVF--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 AR+ P + D P DFGR+A +AKQVI+Q++R+AE + +Y EF K Sbjct: 59 -----AREMGPDGTLVREYDDT--PADFGRIAATTAKQVILQRLRDAEDEVRYGEFSGKE 111 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+I+SG V++ + +V+VDLG + V+ E + E G R++ Y+ VR+ +GPQ Sbjct: 112 GDIVSGVVQQGRDPRSVMVDLGKIEAVLPGPEQVPGEKYEHGSRLRVYVVGVRKGFKGPQ 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + +SRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV + + S++ GAC+G Sbjct: 172 ITVSRTHPNLVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRTLNPSVNGKGACIGP 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV+ ++ EL EKIDI+ S D ATFV NAL PA V+ V V+D V+VP Q Sbjct: 232 MGQRVRNIMHELHGEKIDIIDHSDDPATFVGNALSPAQVSSVEVVDAAARAARVVVPDYQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI 341 LSLAIG+ GQN RLA++LTGW IDI Sbjct: 292 LSLAIGKEGQNARLAARLTGWRIDI 316 >gi|254821852|ref|ZP_05226853.1| transcription elongation factor NusA [Mycobacterium intracellulare ATCC 13950] Length = 348 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/345 (37%), Positives = 198/345 (57%), Gaps = 35/345 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 + I A + +DR + ++ + ++I+ A + Y G +D R+EI+ +TG + + Sbjct: 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVRV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +AR+ D ++ D P FGR+A +A+QV++Q+ R+A Sbjct: 58 -----------------IARETDEDDNVISEWDDT--PEGFGRIAATTARQVMLQRFRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLR 177 E +R Y EF + GEI++G ++R N V+V +G S+GVI E + E+ Sbjct: 99 ENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYE 158 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+RV+ Y+ V R R P + LSRTHP + KLF +EVPEI + V++ AV+R+ G R+ Sbjct: 159 HGNRVRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADESVEIVAVAREAGHRS 218 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V Sbjct: 219 KIAVKSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVV 278 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V ++D V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 279 SVSIIDPSARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|88802100|ref|ZP_01117628.1| transcription elongation factor NusA [Polaribacter irgensii 23-P] gi|88782758|gb|EAR13935.1| transcription elongation factor NusA [Polaribacter irgensii 23-P] Length = 418 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/342 (36%), Positives = 203/342 (59%), Gaps = 15/342 (4%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 KSIDR ++S++ + + + +G+ + + INP+ GD+ ++R VV + E+ Sbjct: 17 KSIDRVTLMSILEEVFRATLKRKFGSDDNFDIIINPDKGDLEIWRNRVVVADGFSEDDNE 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L AR +P +IG VS+ + +D GR A+ + +Q +I K+ E + + FK+ Sbjct: 77 EIELAEARLIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISKIYEHDSTNIFKHFKEL 136 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 GE+ S V + + +I+ D GN + V+ + E I + R GD V+ I V Sbjct: 137 EGELYSAEVHHIRHNAIILLDDDGN-EIVLPKSEQIRSDFFRKGDSVRGVIKTVELRGNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+AV S D IDPVGACV Sbjct: 196 PAIILSRTAPAFLNKLFEQEIPEVFDGLITVERVARIPGEKAKVAVDSYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-------DEDVGRI 308 G++GSR+ +V EL +E ID++ ++ + F+ AL PA VT + + + GR+ Sbjct: 256 GVKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSMEIEMYEEERNGKKGRV 315 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII---TEEED 347 V++ E++S AIGR G N+RLAS+LTG+ ID+ EEED Sbjct: 316 SVLLRPEEVSKAIGRGGVNIRLASELTGYEIDVKREGLEEED 357 >gi|318081083|ref|ZP_07988415.1| transcription elongation factor NusA [Streptomyces sp. SA3_actF] Length = 343 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 29/328 (8%) Query: 59 DISLFRLLEVVEE---VENYTCQISLKVAR---DRDP----------SIDIGGVVSDPLP 102 +IS RL+E +E + + + S + AR DR+ + D+ + D P Sbjct: 12 EISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVWVKEEAADLADLGEDARP 71 Query: 103 ------PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVI 155 P DFGR+A +AKQVI+Q++R+A+ D E+ + G+I++G V++ + NV+ Sbjct: 72 REFDDTPSDFGRIAATTAKQVILQRLRDAQDDATLGEYAGREGDIVTGVVQQGRDPKNVL 131 Query: 156 VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 VD+G + ++ E + E G R++SY+ V + RGP V LSRTHP + KLF +E Sbjct: 132 VDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVRVAKGMRGPSVTLSRTHPNLVKKLFSLE 191 Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 VPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKID Sbjct: 192 VPEIADGSVEIAAIAREAGHRTKIAVRSNRSGLNAKGACIGPMGGRVRNVMAELNGEKID 251 Query: 276 IVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 IV WS + A V +AL PA V+ V V+D V VP QLSLAIG+ GQN RLA++L Sbjct: 252 IVDWSDNPADLVAHALSPARVSHVEVVDLATRSARVTVPDYQLSLAIGKEGQNARLAARL 311 Query: 335 TGWTIDI-----ITEEEDSINRQKDFNE 357 TGW IDI T+E+ + + NE Sbjct: 312 TGWRIDIRPDTETTDEDGNATENGNGNE 339 >gi|328885406|emb|CCA58645.1| Transcription termination protein NusA [Streptomyces venezuelae ATCC 10712] Length = 331 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/342 (38%), Positives = 200/342 (58%), Gaps = 22/342 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A+EK I D+++ + ++ A RVE++ TG ++++ + Sbjct: 5 VKLLKGLAHEKEISFDLLVEAIESALLIAYHRTPDARRHARVELDRVTGHVTVWAKEDPS 64 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E E + +D D + P DFGR+A +A+QVI Q++R+AE D Sbjct: 65 ELEEG-------QEPKDFDDT------------PSDFGRIAASTARQVIQQRLRDAENDV 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + NV+V L + + ++ E + E G R+++Y+ Sbjct: 106 TFGEYARREGDVVAGVVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYSHGLRLRTYVV 165 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 166 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 225 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 LNPKGACIGPMGSRVRNVMAELLGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAAR 285 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S Sbjct: 286 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPS 327 >gi|318062643|ref|ZP_07981364.1| transcription elongation factor NusA [Streptomyces sp. SA3_actG] Length = 367 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 29/328 (8%) Query: 59 DISLFRLLEVVEE---VENYTCQISLKVAR---DRDP----------SIDIGGVVSDPLP 102 +IS RL+E +E + + + S + AR DR+ + D+ + D P Sbjct: 12 EISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVWVKEEAADLADLGEDARP 71 Query: 103 ------PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVI 155 P DFGR+A +AKQVI+Q++R+A+ D E+ + G+I++G V++ + NV+ Sbjct: 72 REFDDTPSDFGRIAATTAKQVILQRLRDAQDDATLGEYAGREGDIVTGVVQQGRDPKNVL 131 Query: 156 VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 VD+G + ++ E + E G R++SY+ V + RGP V LSRTHP + KLF +E Sbjct: 132 VDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVRVAKGMRGPSVTLSRTHPNLVKKLFSLE 191 Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 VPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKID Sbjct: 192 VPEIADGSVEIAAIAREAGHRTKIAVRSNRSGLNAKGACIGPMGGRVRNVMAELNGEKID 251 Query: 276 IVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 IV WS + A V +AL PA V+ V V+D V VP QLSLAIG+ GQN RLA++L Sbjct: 252 IVDWSDNPADLVAHALSPARVSHVEVVDLATRSARVTVPDYQLSLAIGKEGQNARLAARL 311 Query: 335 TGWTIDI-----ITEEEDSINRQKDFNE 357 TGW IDI T+E+ + + NE Sbjct: 312 TGWRIDIRPDTETTDEDGNATENGNGNE 339 >gi|326335427|ref|ZP_08201614.1| N utilization substance protein A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692193|gb|EGD34145.1| N utilization substance protein A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 411 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 213/349 (61%), Gaps = 7/349 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 E + + Y +FK+ +G I + + ++ VI+ D GN + ++ RD I + + G+ Sbjct: 123 HEYDNNTIYKKFKELIGGIYTAEIHHIKGKTVILLDDDGN-EILLPRDRQIPSDFFKKGE 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+A Sbjct: 182 TIKGIIESVDFKGNKPAIILSRTSPLFLERLFEQEIPEIADGLITIQKVARIPGEKAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVG+ G+R++++V EL +E ID++ +S + + F+ AL PA +T + Sbjct: 242 VDSYDDRIDPVGACVGVNGARIRSIVRELGNENIDVINFSNNISLFISKALAPAKITSIT 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE--EED 347 ++E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E EED Sbjct: 302 VNEETKRAEVLLASEEVSKAIGKGGSNIRLASMLTGYEIDVFREGAEED 350 >gi|261749099|ref|YP_003256784.1| transcription elongation factor NusA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497191|gb|ACX83641.1| transcription elongation factor NusA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 419 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 200/327 (61%), Gaps = 3/327 (0%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYT 76 EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++R VV++ V++ Sbjct: 16 EKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRNRIVVQDGTVKDVN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L AR + +IG V++ + GR A+ S +Q ++ K+ E + Y +FK+ Sbjct: 76 KEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSKINEYDNTNIYKKFKN 135 Query: 137 KVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+GEII+ V + +I+ D ++ V+ + E I + R GD V++ + V + Sbjct: 136 KIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGDPVRALVKRVDWKDNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P +L+R F+ +LF +E+PE+ G++ VK V+R PG +AK++V S D IDP+GACV Sbjct: 196 PLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVSVDSYDDRIDPIGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ + ++ AL PA V+ + ++E+ + V V E Sbjct: 256 GMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMMEVNEEHKYVNVYVKLE 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDII 342 ++S AIGR GQN+RLASQLTG+ I I Sbjct: 316 EISKAIGRGGQNIRLASQLTGYKIHIF 342 >gi|313206787|ref|YP_004045964.1| nusa antitermination factor [Riemerella anatipestifer DSM 15868] gi|312446103|gb|ADQ82458.1| NusA antitermination factor [Riemerella anatipestifer DSM 15868] gi|315023860|gb|EFT36862.1| transcription elongation factor NusA [Riemerella anatipestifer RA-YM] gi|325335773|gb|ADZ12047.1| Transcription elongation factor [Riemerella anatipestifer RA-GD] Length = 411 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 200/344 (58%), Gaps = 5/344 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L++ EK+I + +++++ DS++ R Y + V +NP+ GD +F Sbjct: 2 DNLALIEAFGDFKEEKNISKIDLMAIIEDSLKTLLRKRYDSDDHFDVIVNPDKGDFQIFL 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+ E+ +I + AR DP+ ++G + + GR + + KQ++ K+ Sbjct: 62 NKTIVEDQMSEDDDLEIEISEARKTDPTFEVGEEFTQEIKVSQLGRRNILTLKQILATKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGD 180 +E Y +FKD++GEI+ G V + + +VI+ D GN + ++ +D+ I + R GD Sbjct: 122 QEHHNAYLYEQFKDRIGEIMVGEVHHIRFKHVILLDDEGN-EYILPKDKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ I V + PQ+ +SR P+F+ +L +E+PEI +G + +K V R PG +AK+A Sbjct: 181 NVRAVIESVDFKGSKPQITISRISPKFLERLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+ Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKID 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++ + + V P E+++ IG++GQN++LAS L+ + ID+ E Sbjct: 301 INAEESKALVYTPSEEIAKIIGKQGQNIKLASWLSDYEIDVYRE 344 >gi|84498575|ref|ZP_00997338.1| transcription elongation factor NusA [Janibacter sp. HTCC2649] gi|84381108|gb|EAP96993.1| transcription elongation factor NusA [Janibacter sp. HTCC2649] Length = 385 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 201/348 (57%), Gaps = 29/348 (8%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +RD+ L V+ +I++A Y G + R E++ +TG ++++ E VE Sbjct: 14 ERDISLDVLIPAIEQALLLAYQRTDGAYRNSRAELDRKTGHVTIWAREEFEVPVEEEPEA 73 Query: 79 ISLKVARDRD------PSIDIGGV----VSDPLP-------------PMDFGRVAVQSAK 115 + D P+ + G V P P P DFGRVA +A+ Sbjct: 74 PAETPTPDTASADVAAPATESAGATEERVERPAPRMRREYGPEFDDTPTDFGRVAAATAR 133 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRE 174 QVI+Q++R+ E D +FK + G+I++G +++ + +V VD G +G++ E + E Sbjct: 134 QVIVQRLRDIEDDAIMGDFKGREGDIVAGVIQQSPDPRHVTVDFGTVEGILPVAEQVPGE 193 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G R++ Y+ V+R RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G Sbjct: 194 KYVHGQRLRVYVVSVKRGLRGPQIGLSRTHPNLVRKLFALEVPEIADGSVEIAALARESG 253 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R K+AV + + ++ GAC+G G+RV+AV+ EL EKIDIV +S D A+F+ +AL P+ Sbjct: 254 HRTKIAVHTKVAGLNAKGACIGPMGARVRAVMAELHGEKIDIVDFSEDPASFIASALSPS 313 Query: 295 IVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V ++D + VIVP QLSLAIGR GQN RLA++LTGW IDI Sbjct: 314 RVQSVEIVDWQLRAARVIVPDYQLSLAIGREGQNARLAAKLTGWRIDI 361 >gi|333024104|ref|ZP_08452168.1| putative transcription termination factor NusA [Streptomyces sp. Tu6071] gi|332743956|gb|EGJ74397.1| putative transcription termination factor NusA [Streptomyces sp. Tu6071] Length = 369 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +AKQVI+Q++R+A+ D E+ + G+I++G V++ + NV+VD+G Sbjct: 82 PSDFGRIAATTAKQVILQRLRDAQDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKL 141 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R++SY+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 142 EAILPVQEQVPGEEYTHGLRLRSYVVRVAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIAD 201 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKIDIV WS Sbjct: 202 GSVEIAAIAREAGHRTKIAVRSNRSGLNAKGACIGPMGGRVRNVMAELNGEKIDIVDWSD 261 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + A V +AL PA V+ V V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 262 NPADLVAHALSPARVSHVEVVDLATRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 321 Query: 341 IITEEEDS 348 I + E + Sbjct: 322 IRPDTETT 329 >gi|75908091|ref|YP_322387.1| transcription elongation factor NusA [Anabaena variabilis ATCC 29413] gi|75701816|gb|ABA21492.1| NusA antitermination factor [Anabaena variabilis ATCC 29413] Length = 425 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 182/299 (60%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV N QISL + P +G VV D P +FGR+A KQV Sbjct: 72 FRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D ++ V R E +VI+ + ++ G + + E + Sbjct: 132 LAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|295836231|ref|ZP_06823164.1| transcription termination factor NusA [Streptomyces sp. SPB74] gi|295825916|gb|EFG64550.1| transcription termination factor NusA [Streptomyces sp. SPB74] Length = 365 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 161/246 (65%), Gaps = 2/246 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +AKQVI+Q++R+A+ D E+ + G+I++G V++ + NV+VD+G Sbjct: 82 PSDFGRIAATTAKQVILQRLRDAQDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKL 141 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R++SY+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 142 EAILPVQEQVPGEEYTHGLRLRSYVVRVAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIAD 201 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKIDIV WS Sbjct: 202 GSVEIAAIAREAGHRTKIAVRSNRSGLNAKGACIGPMGGRVRNVMAELNGEKIDIVDWSD 261 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + A V +AL PA V+ V V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 262 NPAELVAHALSPARVSHVEVVDLATRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 321 Query: 341 IITEEE 346 I + E Sbjct: 322 IRPDTE 327 >gi|331703354|ref|YP_004400041.1| transcriptional terminator [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801909|emb|CBW54062.1| Transcriptional terminator [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 584 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 206/344 (59%), Gaps = 8/344 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV E++++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V + N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P KV+ Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPV---KVI 299 Query: 301 LDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +G +++VP QLSLAIG++G +L + L I+I + Sbjct: 300 SINKIGDEYDIVVPDSQLSLAIGKQGVAAKLIASLLKTKINIFS 343 >gi|311898673|dbj|BAJ31081.1| putative transcription elongation protein NusA [Kitasatospora setae KM-6054] Length = 333 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 196/333 (58%), Gaps = 27/333 (8%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK + D+++ + ++ A G+ RVE+N +TG ++++ L + E E Sbjct: 14 EKGVPFDLLVESIESALLIAYHRTEGSRRRARVELNRKTGHVTVWALEDASELDEGVE-- 71 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 ++ D + P FGR+A +AKQVI+Q++R+A D+ + E+ K Sbjct: 72 -----PKEFDDT------------PSGFGRIAASTAKQVILQRLRDAADDQTFGEYAGKE 114 Query: 139 GEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 G+I++G V++ GN V+VD+G + ++ E + E+ R G R+K Y+ VRR R Sbjct: 115 GDIVTGVVQQ---GNDPKSVLVDIGKLEAILPPQEQVPGEDYRHGTRLKCYVVGVRRGVR 171 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 GP V LSRTHP + +LF +EVPEI +G V++ A++R+ G R K+AV+S ++ GAC Sbjct: 172 GPSVTLSRTHPSLVKRLFALEVPEIADGSVEIAAIAREAGHRTKIAVWSRRQGLNAKGAC 231 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G G RV+ V+ EL EKIDIV WS D A V AL PA VTKV ++D VIVP Sbjct: 232 IGPNGMRVRGVMAELHGEKIDIVDWSEDPAEMVAAALSPARVTKVEIVDLAQRSARVIVP 291 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 292 DYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|229815167|ref|ZP_04445504.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM 13280] gi|229809397|gb|EEP45162.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM 13280] Length = 426 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 200/356 (56%), Gaps = 54/356 (15%) Query: 19 EKSIDR----DVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV---VEE 71 EK ID+ D + + +A++ + + +G +V I+ TG I ++RL + ++E Sbjct: 18 EKHIDQLYLLDRLEAALAETYARVLKLDWGA----KVTIDRTTGKIYVYRLEPIDDSMDE 73 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 N+T + V P D R+A Q+AK I VR A R++ Y Sbjct: 74 EGNFTEYEEIDVT------------------PKDVSRLAAQTAKAEINAIVRNAAREQIY 115 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-------------IRRDETISRENLRP 178 EF +VG++I+GTV + IV + +GV R+E + E Sbjct: 116 EEFSGRVGDLINGTVLQSTPDFTIVKI--REGVEAELPHFDQRRYPDERNERPAGERYLH 173 Query: 179 GDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 +K+ I DVR E P +++SRTH + M +LF EVPE+Y G V++K+ Sbjct: 174 NQHLKAVIIDVRDPNSTLPPVRGEHSRPPIVISRTHSELMRRLFEQEVPEVYEGTVELKS 233 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 ++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +V Sbjct: 234 IAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDEDPAVYVA 293 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 294 NALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSE 349 >gi|186685820|ref|YP_001869016.1| transcription elongation factor NusA [Nostoc punctiforme PCC 73102] gi|186468272|gb|ACC84073.1| NusA antitermination factor [Nostoc punctiforme PCC 73102] Length = 425 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 182/299 (60%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV N QISL + P +G VV D P +FGR+A KQV Sbjct: 72 FRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D G ++ V R E +V++ + + G + + E + Sbjct: 132 LAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|302522224|ref|ZP_07274566.1| transcription termination factor NusA [Streptomyces sp. SPB78] gi|302431119|gb|EFL02935.1| transcription termination factor NusA [Streptomyces sp. SPB78] Length = 371 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +AKQVI+Q++R+A+ D E+ + G+I++G V++ + NV+VD+G Sbjct: 82 PSDFGRIAATTAKQVILQRLRDAQDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKL 141 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E G R++SY+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 142 EAILPVQEQVPGEEYTHGLRLRSYVVRVAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIAD 201 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV+ V+ EL EKIDIV WS Sbjct: 202 GSVEIAAIAREAGHRTKIAVRSNRSGLNAKGACIGPMGGRVRNVMAELNGEKIDIVDWSD 261 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + A V +AL PA V+ V V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 262 NPADLVAHALSPARVSHVEVVDLATRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 321 Query: 341 IITEEEDS 348 I + E + Sbjct: 322 IRPDTETT 329 >gi|239917227|ref|YP_002956785.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] gi|239838434|gb|ACS30231.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] Length = 328 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 159/242 (65%), Gaps = 2/242 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGRVA +A+QV+IQ++RE + D+ EFKDK GE++SG +++ + V V+LG Sbjct: 76 PNGFGRVAASTARQVMIQRMREEDDDKVLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTL 135 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + V+ E + E+ G R+++Y+ R +GP V +SR+HP + KLF +EVPEI + Sbjct: 136 EAVLPPPEQVPGEDYAHGRRIRAYVVSATRGAKGPSVTVSRSHPGLVRKLFELEVPEIAD 195 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV ++ ++ GA +G GSRV+AV+TEL DEKIDI+ Sbjct: 196 GSVEITALAREAGHRTKMAVRATRPGVNAKGASIGEMGSRVRAVMTELNDEKIDIIDHVD 255 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A + NAL PA V +LD D +VP+ QLSLAIG+ GQN RLA++LTGW ID Sbjct: 256 DPAAMIANALSPATTVSVEILDADQHSARAVVPQYQLSLAIGKEGQNARLAAKLTGWRID 315 Query: 341 II 342 I+ Sbjct: 316 IV 317 >gi|257068213|ref|YP_003154468.1| transcription termination factor NusA [Brachybacterium faecium DSM 4810] gi|256559031|gb|ACU84878.1| transcription termination factor NusA [Brachybacterium faecium DSM 4810] Length = 328 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 200/327 (61%), Gaps = 32/327 (9%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +RD+ L V+ D+I+ A + Y + D V I+ TG++++ Sbjct: 14 ERDIRLPVLLDAIRSALHAAYLHTDHPVRDSEVLIDESTGEVAV---------------- 57 Query: 79 ISLKVARDRDPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +AR+RD GVV + P +FGRVA +A+QVI Q++R+ E + E+ D Sbjct: 58 ----IARERDAD----GVVVEEWDDTPENFGRVAASTARQVIFQRIRDLEDEAVLGEYAD 109 Query: 137 KVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + +I+SG +++ + V+VDLG + V+ E + E+ G R+++Y+ + RR +G Sbjct: 110 RADDIVSGIIQQGRDPRMVLVDLGEVEAVLPPHERVPGEDYSHGRRLRAYVTEARRGPKG 169 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ+ LSR+HP + +LF +EVPE+ +G V++ ++R+ G R K++V ++ ++ G+C+ Sbjct: 170 PQITLSRSHPNLVRRLFDLEVPEVADGTVEITGLAREAGHRTKMSVRATVPGVNAKGSCI 229 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPK 314 G G+RV++V+ EL EKIDIV + D AT+V NAL P+ V+ V + ++VGR + +VP+ Sbjct: 230 GPMGARVRSVMNELGGEKIDIVDFDEDPATYVANALSPSKVSSVTVIDEVGRAVRAVVPE 289 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 290 TQLSLAIGKDGQNARLAAKLTGWKIDI 316 >gi|126657165|ref|ZP_01728331.1| transcription elongation factor NusA [Cyanothece sp. CCY0110] gi|126621436|gb|EAZ92147.1| transcription elongation factor NusA [Cyanothece sp. CCY0110] Length = 432 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 186/313 (59%), Gaps = 17/313 (5%) Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM 104 + VE++ E + +VEEVEN ISL+ ++ +G VV D P Sbjct: 58 FDNFEVELDTEEEGFRILSTKRIVEEVENTDHHISLQEVQEVASEAQLGDEVVLDVTPEQ 117 Query: 105 -DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 DFGR+A KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ G Sbjct: 118 KDFGRMAAIQTKQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSTFG 177 Query: 164 ------VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEV 216 ++ R E + +N R K + VR RGPQ+L+SR +V +F +EV Sbjct: 178 QPEVEAILPRREQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEV 237 Query: 217 PEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 PEI IV++ AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV EL Sbjct: 238 PEIEEDIVRIVAVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNEL 297 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 R EKID++ WSPD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNV Sbjct: 298 RGEKIDVIRWSPDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNV 357 Query: 329 RLASQLTGWTIDI 341 RLA++LTGW IDI Sbjct: 358 RLAARLTGWKIDI 370 >gi|281414299|ref|ZP_06246041.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] gi|289705159|ref|ZP_06501562.1| transcription termination factor NusA [Micrococcus luteus SK58] gi|289558103|gb|EFD51391.1| transcription termination factor NusA [Micrococcus luteus SK58] Length = 328 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 188/326 (57%), Gaps = 24/326 (7%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 E+ I D ++ + ++ A G + RVEI+ TG ++++ E++ Sbjct: 14 EREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTVW-----ATELDEDDTP 68 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I G D P FGRVA +A+QV+IQ++RE + D+ EFKDK Sbjct: 69 I---------------GEFDDT--PNGFGRVAASTARQVMIQRMREEDDDKVLGEFKDKE 111 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 GE++SG +++ + V V+LG + V+ E + E+ G R+++Y+ R +GP Sbjct: 112 GELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVSATRGAKGPS 171 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ ++ GA +G Sbjct: 172 VTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGVNAKGASIGE 231 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 GSRV+AV+TEL DEKIDI+ D A + NAL PA V +LD D +VP+ Q Sbjct: 232 MGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHSARAVVPQYQ 291 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII 342 LSLAIG+ GQN RLA++LTGW IDI+ Sbjct: 292 LSLAIGKEGQNARLAAKLTGWRIDIV 317 >gi|171741240|ref|ZP_02917047.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC 27678] gi|283455398|ref|YP_003359962.1| N utilization substance protein A [Bifidobacterium dentium Bd1] gi|171276854|gb|EDT44515.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC 27678] gi|283102032|gb|ADB09138.1| nusA N utilization substance protein A [Bifidobacterium dentium Bd1] Length = 346 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 200/348 (57%), Gaps = 15/348 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A + ID + + + ++++++ A R+E++P G +++ E+ E Sbjct: 11 LAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGE---- 66 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 D P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 67 ------PTEEDPHPAPTLGEEYDDT--PHDFGRLAAATARQVISQLFRKAEDDKVFGAFS 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 GQKGKLITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA Sbjct: 179 KGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E + Sbjct: 239 LIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAFI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +QLSLAIG+ GQN RLA++LTGW I I + E + Q+ E + Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMQESAGESAE 346 >gi|256384305|gb|ACU78875.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. capri str. GM12] gi|256385138|gb|ACU79707.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455871|gb|ADH22106.1| transcription elongation factor NusA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 584 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 206/344 (59%), Gaps = 8/344 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV E++++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V + N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P KV+ Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPV---KVI 299 Query: 301 LDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +G +++VP QLSLAIG++G +L + L I+I + Sbjct: 300 SINKIGDEYDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFS 343 >gi|296129355|ref|YP_003636605.1| transcription termination factor NusA [Cellulomonas flavigena DSM 20109] gi|296021170|gb|ADG74406.1| transcription termination factor NusA [Cellulomonas flavigena DSM 20109] Length = 364 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 201/347 (57%), Gaps = 41/347 (11%) Query: 23 DRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 +R++ L V+ ++I++A S Y G S RVE++ TG ++++ Sbjct: 14 EREISLDVLVEAIEQALLSAYHRTPGARSRARVELDRRTGHVTVW--------------- 58 Query: 79 ISLKVARDRDPSIDIGGVVSD-------PLP--------PMDFGRVAVQSAKQVIIQKVR 123 ARD P V D P P P FGR+A +A+QVI+Q++R Sbjct: 59 -----ARDPAPEAPAPEVAEDGTVVAVAPAPEMPEYDDTPEGFGRIATATARQVIVQRLR 113 Query: 124 EAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +AE D+ F+ K GE++ G +++ + V+VD+G + V+ E + E G+R+ Sbjct: 114 DAEDDQVLGTFRSKAGEVLGGVIQQGRDPRTVLVDVGGVEAVLPAHEQVPGERYVHGERL 173 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++++ +V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV Sbjct: 174 RAFVLEVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAMAREAGHRTKMAVR 233 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVL 301 ++ + ++ GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA ++ V+ Sbjct: 234 ANVAGVNAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVLDVRVV 293 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + Sbjct: 294 DAAARAARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAEPA 340 >gi|307331528|ref|ZP_07610641.1| transcription termination factor NusA [Streptomyces violaceusniger Tu 4113] gi|306882845|gb|EFN13918.1| transcription termination factor NusA [Streptomyces violaceusniger Tu 4113] Length = 330 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/330 (39%), Positives = 199/330 (60%), Gaps = 21/330 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE+N +TG ++++ E E++E Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTDGSRRRARVELNRDTGHVTVW-AREDAEDLEEG--- 69 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + R+ D + P FGR+A +AKQVI+Q++R+AE + + E+ + Sbjct: 70 ---QEPREFDDT------------PSGFGRIAATTAKQVILQRLRDAEEEITFGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G++++G V++ + NV+VD+G + ++ E + E+ G R+++Y+ V + RGP Sbjct: 115 GDVVAGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRTYVVRVVKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV++V+ EL EKIDIV WS D A V NAL PA V+KV V+D V VP Q Sbjct: 235 MGGRVRSVMAELHGEKIDIVDWSDDPADLVANALSPARVSKVEVVDLAARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|306823536|ref|ZP_07456911.1| transcription termination factor NusA [Bifidobacterium dentium ATCC 27679] gi|309802869|ref|ZP_07696970.1| transcription termination factor NusA [Bifidobacterium dentium JCVIHMP022] gi|304553243|gb|EFM41155.1| transcription termination factor NusA [Bifidobacterium dentium ATCC 27679] gi|308220336|gb|EFO76647.1| transcription termination factor NusA [Bifidobacterium dentium JCVIHMP022] Length = 346 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 200/348 (57%), Gaps = 15/348 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A + ID + + + ++++++ A R+E++P G +++ E+ E Sbjct: 11 LAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGE---- 66 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 D P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 67 ------PTEEDPHPAPTLGEEYDDT--PHDFGRLAAATARQVISQLFRKAEDDKVFGAFS 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 GQKGKLITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA Sbjct: 179 KGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E + Sbjct: 239 LIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAFI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +QLSLAIG+ GQN RLA++LTGW I I + E + Q+ E + Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHARKMQESAGESAE 346 >gi|119511041|ref|ZP_01630161.1| transcription elongation factor NusA [Nodularia spumigena CCY9414] gi|119464292|gb|EAW45209.1| transcription elongation factor NusA [Nodularia spumigena CCY9414] Length = 423 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 183/299 (61%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VE V+N QISL+ + P +G VV D P +FGR+A KQV Sbjct: 70 FRVLSTKSIVEAVDNTDHQISLEEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQTKQV 129 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D G ++ V R E +VI+ + + G + + E + Sbjct: 130 LAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVASGFGQPEVEAELPKREQL 189 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 190 PNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 249 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 250 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 309 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +T++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 310 STYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 368 >gi|297191724|ref|ZP_06909122.1| transcription elongation factor NusA [Streptomyces pristinaespiralis ATCC 25486] gi|197721420|gb|EDY65328.1| transcription elongation factor NusA [Streptomyces pristinaespiralis ATCC 25486] Length = 331 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/247 (46%), Positives = 162/247 (65%), Gaps = 3/247 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P DFGR+A +A+QVI Q++R+AE D + E+ + G++++G V++ + NV+V L + Sbjct: 79 PSDFGRIAATTARQVIQQRLRDAENDVTFGEYARREGDVVAGMVQQGKDPKNVLVKLDDK 138 Query: 162 -DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + ++ E + E G R+++Y+ V R RGP V LSRTHP + KLF +EVPEI Sbjct: 139 LEAILPVQEQVPGEEYTHGLRLRTYVVRVARGVRGPSVTLSRTHPNLVKKLFALEVPEIA 198 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 +G V++ A++R+ G R K+AV S+ S ++P GAC+G G RV+ V+ EL EKIDIV WS Sbjct: 199 DGSVEIAAIAREAGHRTKIAVRSTRSGLNPKGACIGPMGGRVRNVMAELHGEKIDIVDWS 258 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A V NAL PA V+KV ++D V VP QLSLAIG+ GQN RLA++LTGW I Sbjct: 259 DDPAEMVANALSPARVSKVEIVDLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRI 318 Query: 340 DIITEEE 346 DI + E Sbjct: 319 DIRPDTE 325 >gi|301320952|gb|ADK69595.1| transcription termination factor NusA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 584 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/344 (34%), Positives = 206/344 (59%), Gaps = 8/344 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV E++++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ + + N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P KV+ Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPV---KVI 299 Query: 301 LDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +G +++VP QLSLAIG++G +L + L I+I + Sbjct: 300 SINKIGDEYDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFS 343 >gi|86605175|ref|YP_473938.1| transcription elongation factor NusA [Synechococcus sp. JA-3-3Ab] gi|86553717|gb|ABC98675.1| transcription termination factor NusA [Synechococcus sp. JA-3-3Ab] Length = 455 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 194/341 (56%), Gaps = 30/341 (8%) Query: 18 YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 Y K+I RDVV + VE++ E G + +VEEV + Sbjct: 42 YRKTIQRDVVFE-------------EDHFRNFDVELDVEAGGFRILATKTIVEEVRDPDH 88 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +ISL + P ++G V++ + P +FGR+A KQV+ QK+R+ +R EF+ Sbjct: 89 EISLYDVQQDYPEAEVGWEVTNDVTPQQAEFGRMAAIQTKQVLAQKLRDQQRRLIQEEFR 148 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETISRENLRPGDRVKSYIYDV 189 D ++ V R E VI+ + + G + + E ++ + P +K Y+ V Sbjct: 149 DLENTVLQARVLRTERQTVIMAVSSGFGQPEVEAELPKKEQLASDRYTPNAVMKVYLKKV 208 Query: 190 RR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV-------SRDPGSRAKLAV 241 +RGPQ+L+SR +V LF EVPEI IV++ AV SR+ G R K+AV Sbjct: 209 YEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVAVAREANPPSRNVGPRTKIAV 268 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSPD AT++ NAL PA V +V + Sbjct: 269 DTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSPDPATYIANALSPAKVVEVRL 328 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 329 VDPEIQQAHVLVTSDQLSLAIGKEGQNVRLAARLTGWKIDI 369 >gi|297156812|gb|ADI06524.1| transcription elongation factor NusA [Streptomyces bingchenggensis BCW-1] Length = 330 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/330 (39%), Positives = 197/330 (59%), Gaps = 21/330 (6%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQ 78 EK I D+++ + ++ A G+ RVE++ TG ++++ E+ E+ Sbjct: 14 EKEISFDLLVEAIESALLIAYHRTEGSRRRARVELDRATGHVTVW----AREDAEDLA-- 67 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + R+ D + P FGR+A +AKQVI+Q++R+AE + + E+ + Sbjct: 68 -EGEEPREFDDT------------PSGFGRIAAMTAKQVILQRLRDAEEEITFGEYAGRE 114 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G++++G V++ + NV+VD+G + ++ E + E+ G R++SY+ V + RGP Sbjct: 115 GDVVTGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRSYVVRVVKGVRGPS 174 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G Sbjct: 175 VTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGP 234 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 G RV++V+ EL EKIDIV WS D A V NAL PA V+KV V+D V VP Q Sbjct: 235 MGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDMGARSARVTVPDYQ 294 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 295 LSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|172036756|ref|YP_001803257.1| transcription elongation factor NusA [Cyanothece sp. ATCC 51142] gi|171698210|gb|ACB51191.1| transcription termination factor, N utilization substance protein [Cyanothece sp. ATCC 51142] Length = 428 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/311 (41%), Positives = 186/311 (59%), Gaps = 17/311 (5%) Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM-D 105 + VE++ E + +VEEVEN ISL+ ++ +G VV D P D Sbjct: 60 NFEVELDTEEEGFRILSTKRIVEEVENSDHHISLQEVQEVASEAQLGDEVVLDVTPEQKD 119 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-- 163 FGR+A KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ G Sbjct: 120 FGRMAAIQTKQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSAFGQP 179 Query: 164 ----VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPE 218 ++ + E + +N R K + VR RGPQ+L+SR +V +F +EVPE Sbjct: 180 EVEAILPKREQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPE 239 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I IV++ AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR Sbjct: 240 IEEDIVRIVAVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 299 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRL Sbjct: 300 EKIDVIRWSPDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRL 359 Query: 331 ASQLTGWTIDI 341 A++LTGW IDI Sbjct: 360 AARLTGWKIDI 370 >gi|254422159|ref|ZP_05035877.1| transcription termination factor NusA [Synechococcus sp. PCC 7335] gi|196189648|gb|EDX84612.1| transcription termination factor NusA [Synechococcus sp. PCC 7335] Length = 517 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 184/300 (61%), Gaps = 22/300 (7%) Query: 63 FRLL---EVVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VE VEN QI L + P G VV D P DFGR+A KQV Sbjct: 71 FRVLANKTIVEAVENSDHQIGLAEVQQVAPEALAGDTVVLDVTPEQNDFGRMAAIQTKQV 130 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDET 170 + QK+R+ +R EF+D G I++ V R E +VI+ + + G +++RD+ Sbjct: 131 LAQKLRDQQRRLIQEEFQDLEGSILNARVLRFERQSVIMAVSSGIGQPDTEAELLKRDQ- 189 Query: 171 ISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + +N R + + V RGPQ+L+SR+ +V+LF EVPEI + IV++ AV Sbjct: 190 LPNDNYRANATFRVALKRVSEGSHRGPQLLVSRSDASLVVELFSNEVPEIEDEIVRIVAV 249 Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +R+ G R K+AV +++S +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 250 AREANPPSRSVGPRTKIAVDTAESDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 309 Query: 283 SATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +T++ NAL PA V +V L + GR V+VP++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 310 PSTYISNALSPARVDEVRLMDSEGRQAHVLVPEDQLSLAIGKEGQNVRLAARLTGWKIDI 369 >gi|319951028|ref|ZP_08024892.1| transcription elongation factor NusA [Dietzia cinnamea P4] gi|319435308|gb|EFV90564.1| transcription elongation factor NusA [Dietzia cinnamea P4] Length = 328 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/253 (44%), Positives = 160/253 (63%), Gaps = 9/253 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P DFGRVA +A+Q+I+Q++REAE DR Y + + GE++SG ++ N V+V + Sbjct: 76 PSDFGRVAAATARQIILQRLREAETDRIYGDLVTREGEVVSGVIQSDSRANARGIVVVHI 135 Query: 159 G----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G ++G I E + E+ R GDR+K ++ V + G V LSRTHP + LF + Sbjct: 136 GPENGGTEGTIAPAEQVPGESYRHGDRIKCHVVGVHKGPHGASVSLSRTHPDLVRGLFAL 195 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI +G V++ A++R+ G R K+AV S+ S ++ GAC+G G+RV+AV+ EL EKI Sbjct: 196 EVPEIGDGSVRIAAIAREAGHRTKIAVESTVSGLNAKGACIGPNGARVRAVMAELNGEKI 255 Query: 275 DIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DIV + D FV NAL PA +++ V DE V+VP QLSLAIG+ GQN RLA + Sbjct: 256 DIVDYDDDPTVFVGNALSPAKVISVTVADEQARAARVVVPDYQLSLAIGKEGQNARLAHR 315 Query: 334 LTGWTIDIITEEE 346 LT W IDI ++ E Sbjct: 316 LTQWRIDIHSDAE 328 >gi|282898464|ref|ZP_06306454.1| NusA antitermination factor [Raphidiopsis brookii D9] gi|281196630|gb|EFA71536.1| NusA antitermination factor [Raphidiopsis brookii D9] Length = 424 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/299 (43%), Positives = 181/299 (60%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV N QISL + P G VV D P +FGR+A KQV Sbjct: 72 FRVLSTKIIVEEVTNSDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D G ++ V R E +VI+ + +S G + + E + Sbjct: 132 LAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 + R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|284929277|ref|YP_003421799.1| transcription termination factor NusA [cyanobacterium UCYN-A] gi|284809721|gb|ADB95418.1| transcription termination factor NusA [cyanobacterium UCYN-A] Length = 387 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 192/327 (58%), Gaps = 20/327 (6%) Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM 104 + VE++ E + +++E VEN ISL+ ++ +G VV D P Sbjct: 58 FDNFEVELDTEEEGFRILSTKKIMENVENIDHHISLQEVQEVASEAQLGDEVVLDVTPEQ 117 Query: 105 -DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 DFGR+A KQV++QK+R+ +R EF++ G +++ V R E ++IV + ++ G Sbjct: 118 KDFGRMAAIQTKQVLLQKLRDQQRKLIQEEFQELEGTVLNARVLRFERQDIIVAVQSTFG 177 Query: 164 ------VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEV 216 +I + E + +N R K + VR RGPQ+L+SR +V +F +EV Sbjct: 178 QPEVEAIIPKQEQLPNDNYRANSSFKILLKKVREGSHRGPQLLVSRAAAGLVVDMFSIEV 237 Query: 217 PEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 PEI IV++ AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV EL Sbjct: 238 PEIEEDIVRIVAVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNEL 297 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNV 328 R EKID++ WSPD AT++ NAL PA + +V+L D ++V ++QLSLAIG+ GQNV Sbjct: 298 RGEKIDVIRWSPDPATYIANALSPARIDEVILISPDERHALILVAEDQLSLAIGKEGQNV 357 Query: 329 RLASQLTGWTIDI---ITEEEDSINRQ 352 RLA++LTGW IDI I E+ N+Q Sbjct: 358 RLAARLTGWKIDIKNTIAHREELENQQ 384 >gi|282898605|ref|ZP_06306593.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281196473|gb|EFA71382.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 428 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/299 (43%), Positives = 181/299 (60%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV N QISL + P G VV D P +FGR+A KQV Sbjct: 72 FRVLSTKTIVEEVTNGDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D G ++ V R E +VI+ + +S G + + E + Sbjct: 132 LAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 + R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|296139427|ref|YP_003646670.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296027561|gb|ADG78331.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 333 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/336 (37%), Positives = 192/336 (57%), Gaps = 31/336 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ EK I + V+ + ++ A + G R+++N TG++ + Sbjct: 10 AIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVL----------- 58 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 A++ D +I D P FGR+A SA+Q+I Q++R+AE DR + EF Sbjct: 59 ---------AQELDADGNIITEWDDT--PEGFGRIAADSARQLITQRLRDAENDRTFGEF 107 Query: 135 KDKVGEIISGTV----KRVEYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 GE++SG V + G V+V +G+ +G++ E + EN GDR+K Y+ Sbjct: 108 AVYEGEVVSGVVQADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDRMKFYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R QRG Q+ LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV +S Sbjct: 168 VGVSRGQRGTQITLSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAVRTSVP 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP-AIVTKVVLDEDV 305 ++ GAC+G G RV+ V+++L EKIDI+ + D A FV NAL P ++V+ ++D Sbjct: 228 GLNAKGACIGPMGQRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTIVDPKE 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP +LSLAIG+ GQN RLA++LTGW IDI Sbjct: 288 KAARVVVPDFKLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|260201972|ref|ZP_05769463.1| transcription elongation factor NusA [Mycobacterium tuberculosis T46] gi|289444392|ref|ZP_06434136.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] gi|289417311|gb|EFD14551.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] Length = 347 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 131/337 (38%), Positives = 199/337 (59%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 10 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------------ 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +AR+ D + G ++S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 58 --------IARETD---EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 106 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Y Sbjct: 107 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPATEQVPGESYEHGNRLRCY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 167 VVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 227 AGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQT 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|224534126|ref|ZP_03674706.1| transcription elongation protein NusA [Borrelia spielmanii A14S] gi|224514551|gb|EEF84865.1| transcription elongation protein NusA [Borrelia spielmanii A14S] Length = 482 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 240/393 (61%), Gaps = 11/393 (2%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +IS K ++R+ +I G + P F R+++Q AKQ ++ E + E Sbjct: 71 SFFEISEKDISRE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSE 127 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 FK K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 128 FKSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGK 187 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG Sbjct: 188 NGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGP 247 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL P+ + V ++DED+ + V+V Sbjct: 248 CIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDALTPSKIEHVYIIDEDLHKALVVV 307 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEI 371 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D++ Sbjct: 308 SDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKV 362 Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + ++ E F ++ +++ +K+ + + I +E Sbjct: 363 MQDVVEEEQFEEISKISDLKLLDSSVISNLSKE 395 >gi|302542143|ref|ZP_07294485.1| transcription termination factor NusA [Streptomyces hygroscopicus ATCC 53653] gi|302459761|gb|EFL22854.1| transcription termination factor NusA [Streptomyces himastatinicus ATCC 53653] Length = 330 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 167/251 (66%), Gaps = 2/251 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS 161 P FGR+A +AKQVI+Q++R+AE + + E+ + G++++G V++ + N++VD+G Sbjct: 79 PSGFGRIAAMTAKQVILQRLRDAEEEITFGEYAGREGDVVAGVVQQGKDPKNILVDIGRL 138 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ E + E+ G R+++Y+ V + RGP V LSRTHP + KLF +EVPEI + Sbjct: 139 EAILPSQEQVPGEDYAHGTRLRTYVVRVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIAD 198 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G V++ A++R+ G R K+AV S+ S ++ GAC+G G RV++V+ EL EKIDIV WS Sbjct: 199 GSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSD 258 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A V NAL PA V+KV V+D V VP QLSLAIG+ GQN RLA++LTGW ID Sbjct: 259 DPAELVANALSPARVSKVEVVDLAARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRID 318 Query: 341 IITEEEDSINR 351 I + + S ++ Sbjct: 319 IRPDTDQSADQ 329 >gi|15842382|ref|NP_337419.1| transcription elongation factor NusA [Mycobacterium tuberculosis CDC1551] gi|13882681|gb|AAK47233.1| N utilization substance protein A [Mycobacterium tuberculosis CDC1551] Length = 343 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 131/337 (38%), Positives = 199/337 (59%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 6 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------------ 53 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +AR+ D + G ++S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 54 --------IARETD---EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 102 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Y Sbjct: 103 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 163 VVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 223 AGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQT 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 283 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 319 >gi|119025371|ref|YP_909216.1| transcription elongation factor NusA [Bifidobacterium adolescentis ATCC 15703] gi|154486780|ref|ZP_02028187.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis L2-32] gi|118764955|dbj|BAF39134.1| N utilization substance homolog [Bifidobacterium adolescentis ATCC 15703] gi|154084643|gb|EDN83688.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis L2-32] Length = 350 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/333 (35%), Positives = 195/333 (58%), Gaps = 15/333 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A + ID + + + ++++++ A RVE++P G +++ E+ E Sbjct: 11 LAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPGE---- 66 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 D P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 67 ------PTEDDPHPAPTLGEEYDDT--PHDFGRLAAATARQVISQLFRKAEDDKVFGAFS 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 GQKGKLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA Sbjct: 179 KGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E + Sbjct: 239 LIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNKTAIAFI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|219685679|ref|ZP_03540493.1| transcription elongation protein NusA [Borrelia garinii Far04] gi|219672795|gb|EED29820.1| transcription elongation protein NusA [Borrelia garinii Far04] Length = 482 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/393 (32%), Positives = 238/393 (60%), Gaps = 11/393 (2%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +I K ++++ +I G + P F R+++Q AKQ ++ E + E Sbjct: 71 SLLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSE 127 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 FK K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 128 FKSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGK 187 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG Sbjct: 188 NGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGP 247 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V +LDED+ + V+V Sbjct: 248 CIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVV 307 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEI 371 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D++ Sbjct: 308 SDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKV 362 Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + ++ E F D+ +++ +K+ + + I +E Sbjct: 363 MQDVVEEEQFEDISKISDLKLLDSSVISNLSKE 395 >gi|15609978|ref|NP_217357.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Rv] gi|31794018|ref|NP_856511.1| transcription elongation factor NusA [Mycobacterium bovis AF2122/97] gi|121638721|ref|YP_978945.1| transcription elongation factor NusA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662682|ref|YP_001284205.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|148824031|ref|YP_001288785.1| transcription elongation factor NusA [Mycobacterium tuberculosis F11] gi|167967194|ref|ZP_02549471.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|215404813|ref|ZP_03416994.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|215412673|ref|ZP_03421391.1| transcription elongation factor NusA [Mycobacterium tuberculosis 94_M4241A] gi|215431783|ref|ZP_03429702.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|215447095|ref|ZP_03433847.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|218754589|ref|ZP_03533385.1| transcription elongation factor NusA [Mycobacterium tuberculosis GM 1503] gi|224991213|ref|YP_002645902.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253798073|ref|YP_003031074.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 1435] gi|254232936|ref|ZP_04926263.1| N utilization substance protein A nusA [Mycobacterium tuberculosis C] gi|254365487|ref|ZP_04981532.1| N utilization substance protein A nusA [Mycobacterium tuberculosis str. Haarlem] gi|254551905|ref|ZP_05142352.1| transcription elongation factor NusA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260206152|ref|ZP_05773643.1| transcription elongation factor NusA [Mycobacterium tuberculosis K85] gi|289553371|ref|ZP_06442581.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 605] gi|289575542|ref|ZP_06455769.1| N utilization substance protein A nusA [Mycobacterium tuberculosis K85] gi|289746639|ref|ZP_06506017.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|289754949|ref|ZP_06514327.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|289758961|ref|ZP_06518339.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|289763017|ref|ZP_06522395.1| N utilization substance protein A nusA [Mycobacterium tuberculosis GM 1503] gi|294994068|ref|ZP_06799759.1| transcription elongation factor NusA [Mycobacterium tuberculosis 210] gi|297635454|ref|ZP_06953234.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN 4207] gi|297732453|ref|ZP_06961571.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN R506] gi|298526309|ref|ZP_07013718.1| N utilization substance protein A nusA [Mycobacterium tuberculosis 94_M4241A] gi|306777125|ref|ZP_07415462.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu001] gi|306781031|ref|ZP_07419368.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu002] gi|306785669|ref|ZP_07423991.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu003] gi|306789709|ref|ZP_07428031.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu004] gi|306794342|ref|ZP_07432644.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu005] gi|306798766|ref|ZP_07437068.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu006] gi|306804612|ref|ZP_07441280.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu008] gi|306807354|ref|ZP_07444022.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu007] gi|306968905|ref|ZP_07481566.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu009] gi|306973241|ref|ZP_07485902.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu010] gi|307080950|ref|ZP_07490120.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu011] gi|307085545|ref|ZP_07494658.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu012] gi|313659785|ref|ZP_07816665.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN V2475] gi|61229169|sp|P0A5M2|NUSA_MYCTU RecName: Full=Transcription elongation protein nusA gi|61229170|sp|P0A5M3|NUSA_MYCBO RecName: Full=Transcription elongation protein nusA gi|3261746|emb|CAB08449.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium tuberculosis H37Rv] gi|31619612|emb|CAD95051.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium bovis AF2122/97] gi|121494369|emb|CAL72850.1| Probable N utilization substance protein A nusA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601995|gb|EAY61005.1| N utilization substance protein A nusA [Mycobacterium tuberculosis C] gi|134151000|gb|EBA43045.1| N utilization substance protein A nusA [Mycobacterium tuberculosis str. Haarlem] gi|148506834|gb|ABQ74643.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|148722558|gb|ABR07183.1| N utilization substance protein A nusA [Mycobacterium tuberculosis F11] gi|224774328|dbj|BAH27134.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253319576|gb|ACT24179.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 1435] gi|289438003|gb|EFD20496.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 605] gi|289539973|gb|EFD44551.1| N utilization substance protein A nusA [Mycobacterium tuberculosis K85] gi|289687167|gb|EFD54655.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|289695536|gb|EFD62965.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|289710523|gb|EFD74539.1| N utilization substance protein A nusA [Mycobacterium tuberculosis GM 1503] gi|289714525|gb|EFD78537.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|298496103|gb|EFI31397.1| N utilization substance protein A nusA [Mycobacterium tuberculosis 94_M4241A] gi|308214494|gb|EFO73893.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu001] gi|308326139|gb|EFP14990.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu002] gi|308329669|gb|EFP18520.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu003] gi|308333808|gb|EFP22659.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu004] gi|308337334|gb|EFP26185.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu005] gi|308340977|gb|EFP29828.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu006] gi|308346277|gb|EFP35128.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu007] gi|308348792|gb|EFP37643.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu008] gi|308353518|gb|EFP42369.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu009] gi|308357359|gb|EFP46210.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu010] gi|308361312|gb|EFP50163.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu011] gi|308364913|gb|EFP53764.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu012] gi|323718540|gb|EGB27710.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CDC1551A] gi|326904454|gb|EGE51387.1| N utilization substance protein A nusA [Mycobacterium tuberculosis W-148] gi|328457846|gb|AEB03269.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 4207] Length = 347 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 131/337 (38%), Positives = 199/337 (59%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 10 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------------ 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +AR+ D + G ++S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 58 --------IARETD---EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 106 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Y Sbjct: 107 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 167 VVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 227 AGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQT 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|51599052|ref|YP_073240.1| transcription elongation factor NusA [Borrelia garinii PBi] gi|51573623|gb|AAU07648.1| N-utilization substance protein A [Borrelia garinii PBi] Length = 482 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/393 (32%), Positives = 238/393 (60%), Gaps = 11/393 (2%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +I K ++++ +I G + P F R+++Q AKQ ++ E + E Sbjct: 71 SLLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSE 127 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 FK K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 128 FKSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGK 187 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG Sbjct: 188 NGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGP 247 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V +LDED+ + V+V Sbjct: 248 CIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVV 307 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEI 371 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D++ Sbjct: 308 SDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKV 362 Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + ++ E F D+ +++ +K+ + + I +E Sbjct: 363 MQDVVEEEQFEDISKISDLKLLDSSVISNLSKE 395 >gi|152991227|ref|YP_001356949.1| transcription elongation factor NusA [Nitratiruptor sp. SB155-2] gi|151423088|dbj|BAF70592.1| transcription termination factor NusA [Nitratiruptor sp. SB155-2] Length = 371 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 201/345 (58%), Gaps = 9/345 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I D++A+EK + + V + + + A+ + G + EI+P+T I +F+ + Sbjct: 3 KIVDIIDSIAHEKGLPVEQVKEAIQKAFENTAKKVLGEDLEFEAEIDPDTKSIKVFQKIL 62 Query: 68 VVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ + Q I+L A++ DP++++G + P+ GR A I + Sbjct: 63 VVEDGDERATQEPERYITLSEAKEIDPNVEVGDELRYPVEFEKLGRTAAMRLHNEIEFHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + + ++K ++G IISGTV RV E N V++ G++ + I E +PGD Sbjct: 123 QRLMEQQLFEKYKQRIGTIISGTVTRVDEEENTYVEIDEVKGILPKRYRIKGEFFKPGDV 182 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+ + V ++ G + LSRT P+F+ +L +EVPEI +G+V ++ V+R PG RAK+A Sbjct: 183 VKAILKRVVFDKINGIYLELSRTTPKFLEELLKLEVPEIKDGLVTIEKVARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S IDPVGACVG+RG R+ AV ELR E ID + +SP FV +L PAI+T V Sbjct: 243 VNSHSPKIDPVGACVGVRGVRINAVSKELRGENIDCIEYSPIPEIFVARSLSPAIITSVK 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 ++ D + V +P +Q S AIG+ G N+RLAS LTG+ I++I E Sbjct: 303 IEGD--KAIVTLPSDQKSKAIGKSGINIRLASMLTGYEIELIETE 345 >gi|56752082|ref|YP_172783.1| transcription elongation factor NusA [Synechococcus elongatus PCC 6301] gi|56687041|dbj|BAD80263.1| N utilization substance protein A [Synechococcus elongatus PCC 6301] Length = 441 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 209/371 (56%), Gaps = 34/371 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-----------MSDI 49 MV+ LE Q+ A++ +K + +V+ + +++ K T +I Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60 Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107 VE++ E + +V +VEN QI+L ++ P G +V + P DFG Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR- 166 R+A KQV+ QK+R+ +R EF+D ++ V R E +VI LG S G+ R Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVI--LGVSSGLGRP 178 Query: 167 -------RDETISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPE 218 R E + +N R + ++ +V E +RGPQ+++SR + +V LF EVPE Sbjct: 179 EVEAELPRREQLPNDNYRANATFRVFLKEVSEEPRRGPQLIVSRANAGLVVYLFENEVPE 238 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I +G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR Sbjct: 239 IQDGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRG 298 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI-EVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA V +V L + GRI V+V +QLSLAIG+ GQNVRL Sbjct: 299 EKIDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRL 358 Query: 331 ASQLTGWTIDI 341 A++LTGW IDI Sbjct: 359 AARLTGWKIDI 369 >gi|18158875|pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa gi|18158876|pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa Length = 366 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 131/337 (38%), Positives = 199/337 (59%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 29 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------------ 76 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +AR+ D + G ++S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 77 --------IARETD---EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 125 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Y Sbjct: 126 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 186 VVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 246 AGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQT 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 342 >gi|88855366|ref|ZP_01130030.1| transcription elongation factor NusA [marine actinobacterium PHSC20C1] gi|88815273|gb|EAR25131.1| transcription elongation factor NusA [marine actinobacterium PHSC20C1] Length = 333 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 109/249 (43%), Positives = 165/249 (66%), Gaps = 5/249 (2%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P DFGR+A +AKQVI Q++R+ D+ EFK + G+I++G +++ +I +DLG Sbjct: 84 PSDFGRIAAFAAKQVINQRLRDIGDDKVLGEFKGREGDIVAGVIQQGPNPRMIHIDLGTV 143 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ +E + E + G R++ Y+ V + +GPQ+ +SRTHP + KLF +EVPEI + Sbjct: 144 EAIMPPEEQVPSEEYKHGSRLRVYVTAVNKGDKGPQITVSRTHPSLVRKLFALEVPEIAS 203 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ +V+R+ G R K+AV +++ ++ G+C+G G RV+AV EL +EKIDIV +S Sbjct: 204 GIVEITSVAREAGHRTKMAVRATEPGVNAKGSCIGELGQRVRAVTAELNNEKIDIVDYSE 263 Query: 282 DSATFVINALRPAIV-TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + A FV NAL PA V + V+DE + +VP QLSLAIG+ GQN RLA++LTG ID Sbjct: 264 NLAVFVANALSPAKVSSSFVIDETTKAVRALVPDYQLSLAIGKEGQNARLAAKLTGARID 323 Query: 341 IITEEEDSI 349 I + DSI Sbjct: 324 I---QPDSI 329 >gi|294815429|ref|ZP_06774072.1| Transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] gi|326443782|ref|ZP_08218516.1| transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] gi|294328028|gb|EFG09671.1| Transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] Length = 335 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 198/345 (57%), Gaps = 32/345 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL---- 65 +++ +A EK I D+++ + ++ A G+ R E++ +TG ++++ Sbjct: 5 VKLLKGLAQEKEIPFDLLVEAIESALLIAYHRTEGSRRHARAELSRQTGHVTVWAEEDPA 64 Query: 66 -LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 LE +E + + D PS DFGR+A +A+QVI Q++R+ Sbjct: 65 DLEEGQEPKEF----------DDTPS--------------DFGRIAATTARQVIQQRLRD 100 Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 AE D + E+ + G+++SG V++ + NV+V L + + ++ E + E G R+ Sbjct: 101 AENDVTFGEYARREGDVVSGQVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYPHGLRL 160 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV Sbjct: 161 RTYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVR 220 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 S+ S ++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+ Sbjct: 221 STRSGLNAKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVV 280 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 281 DLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 325 >gi|212716581|ref|ZP_03324709.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM 16992] gi|225351012|ref|ZP_03742035.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660285|gb|EEB20860.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM 16992] gi|225158468|gb|EEG71710.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 350 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 120/334 (35%), Positives = 198/334 (59%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A + ID + + + ++++++ A RVE++P G +++ E+ VE E+ Sbjct: 11 LAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 71 -----------NPHPAPTLGEEYDDT--PRDFGRLAAATARQVISQLFRKAEDDKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 LKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNQTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|41409007|ref|NP_961843.1| transcription elongation factor NusA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397366|gb|AAS05226.1| NusA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 351 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 203/346 (58%), Gaps = 37/346 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 + I A + +DR + ++ + ++I+ A + Y G +D R+EI+ +TG + + Sbjct: 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVRE 124 +AR+ D + G V+S+ P FGR+A +A+QV++Q+ R+ Sbjct: 58 -----------------IARETD---EDGNVISEWDDTPEGFGRIAATTARQVMLQRFRD 97 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENL 176 AE +R Y EF + GEI++G ++R N V+V +G S+GVI E + E+ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESY 157 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+RV+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R Sbjct: 158 EHGNRVRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHR 217 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V Sbjct: 218 SKIAVKSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKV 277 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V ++D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 278 VSVSIIDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|256824991|ref|YP_003148951.1| transcription termination factor NusA [Kytococcus sedentarius DSM 20547] gi|256688384|gb|ACV06186.1| transcription termination factor NusA [Kytococcus sedentarius DSM 20547] Length = 357 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 194/333 (58%), Gaps = 28/333 (8%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 V E+ I DV++ + ++ +A + G + RVE++ +G + ++ Sbjct: 11 VEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVW------------ 58 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVREAERDRQ 130 AR+ P ++ G + P P DFGR+ + +QVI Q++R+ E + Sbjct: 59 --------AREDAPVLE-DGTRGEAGPEFDDTPEDFGRIGAFTVRQVIRQRLRDLEDEAV 109 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 +FK K G+I++G +++ + I VDLG +G++ E + E+ + GDR++ Y+ Sbjct: 110 LGDFKGKEGDIVAGVIQQSNDPHAIHVDLGTVEGLLGTSEQVPLEDYKHGDRIRCYVIHA 169 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 +R +GP + LSRTHP + KLF +EVPE+ +G V++++++R+ G R+K+AV ++ ++ Sbjct: 170 KRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVRATQPGVN 229 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 G+C+G G RV+AV+ EL+ EKIDIV + D FV AL PA VT V V+DE Sbjct: 230 AKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVVDEKTRSA 289 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 290 RVTVPAHQLSLAIGKEGQNARLAARLTGWRIDI 322 >gi|289548941|ref|YP_003473929.1| NusA antitermination factor [Thermocrinis albus DSM 14484] gi|289182558|gb|ADC89802.1| NusA antitermination factor [Thermocrinis albus DSM 14484] Length = 327 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 169/245 (68%), Gaps = 1/245 (0%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNS 161 P D R+A +AK+ ++++ AE +R YLEF + GEI+ G V++V E G+++VDLG Sbjct: 75 PADMDRIAAYAAKEEFLKELERAEEERSYLEFVELEGEIVVGIVRKVQEDGDLLVDLGKV 134 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 GV+ + E I +E+ + GDR+++ + +VR+ + +++LSRTHP+F+ KL EVPEI Sbjct: 135 MGVLPKKEQIPKEHYKVGDRLRALLLEVRKRRGKYEIILSRTHPRFLKKLLEAEVPEIKE 194 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G ++V+A++R+PG RAK+ V S+DS +DPVG VG+RGS++ + EL E+ID++ S Sbjct: 195 GYIKVEAIAREPGERAKVLVSSTDSRMDPVGVVVGVRGSKIAPITEELSGERIDVIKKSD 254 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +L PA V+ V L + R EV VPKE+LSLAIG+ G NVRLAS++TGW ID+ Sbjct: 255 SVEELIKRSLAPAPVSAVRLFPEEKRAEVAVPKEKLSLAIGKGGVNVRLASKITGWRIDV 314 Query: 342 ITEEE 346 +EE+ Sbjct: 315 YSEED 319 >gi|118462823|ref|YP_882872.1| transcription elongation factor NusA [Mycobacterium avium 104] gi|118164110|gb|ABK65007.1| transcription termination factor NusA [Mycobacterium avium 104] Length = 351 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 203/346 (58%), Gaps = 37/346 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 + I A + +DR + ++ + ++I+ A + Y G +D R+EI+ +TG + + Sbjct: 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVRE 124 +AR+ D + G V+S+ P FGR+A +A+QV++Q+ R+ Sbjct: 58 -----------------IARETD---EDGNVISEWDDTPEGFGRIAATTARQVMLQRFRD 97 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENL 176 AE +R Y EF + GEI++G ++R N V+V +G S+GVI E + E+ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESY 157 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+RV+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R Sbjct: 158 EHGNRVRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHR 217 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V Sbjct: 218 SKIAVKSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKV 277 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V ++D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 278 VSVSIIDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >gi|15595145|ref|NP_212934.1| transcription elongation factor NusA [Borrelia burgdorferi B31] gi|218249928|ref|YP_002375299.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7] gi|223889315|ref|ZP_03623902.1| transcription elongation protein NusA [Borrelia burgdorferi 64b] gi|226321265|ref|ZP_03796793.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26] gi|3914177|sp|O51740|NUSA_BORBU RecName: Full=Transcription elongation protein nusA gi|2688748|gb|AAC67154.1| N-utilization substance protein A (nusA) [Borrelia burgdorferi B31] gi|218165116|gb|ACK75177.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7] gi|223885236|gb|EEF56339.1| transcription elongation protein NusA [Borrelia burgdorferi 64b] gi|226233297|gb|EEH32048.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26] Length = 482 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/396 (31%), Positives = 241/396 (60%), Gaps = 16/396 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K ++++ +I G + P F R+++Q AKQ ++ E + EF Sbjct: 72 LLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEII 372 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKVM 363 Query: 373 AHLLVAEGFADVEELACVKISEIASI-----EGFDE 403 ++ E F ++ +++ +K+ + + I EGFD+ Sbjct: 364 QDVVEEEQFEEISKISDLKLLDPSVISNLSKEGFDD 399 >gi|42560896|ref|NP_975347.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492393|emb|CAE76989.1| transcriptional terminator [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 584 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/344 (33%), Positives = 205/344 (59%), Gaps = 8/344 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV E++++ +I+L A+ ++P I I + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIDDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ + + N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P KV+ Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPV---KVI 299 Query: 301 LDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +G +++VP QLSLAIG++G +L + L I+I + Sbjct: 300 SINKIGDEYDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFS 343 >gi|260187857|ref|ZP_05765331.1| transcription elongation factor NusA [Mycobacterium tuberculosis CPHL_A] gi|289448503|ref|ZP_06438247.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] gi|289421461|gb|EFD18662.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] Length = 347 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/337 (38%), Positives = 199/337 (59%), Gaps = 33/337 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 10 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------------ 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +AR+ D + G ++S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 58 --------IARETD---EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 106 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 F + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Y Sbjct: 107 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 167 VVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 227 AGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQT 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ARAARVVVPDFQLSLAIGKDGQNARLAARLTGWRIDI 323 >gi|227543254|ref|ZP_03973303.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51866] gi|227181063|gb|EEI62035.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51866] Length = 326 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 191/338 (56%), Gaps = 33/338 (9%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTM--SDIRVEINPETGDISLFRLLEVVEEVENYT 76 EK I + +L+ +A + +A + S RVEI+P++G +++F Sbjct: 10 EKGISVEDLLTTIAQGLHRAYLQAHHLEDESSARVEIDPDSGAVTVF------------- 56 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 + RD D I + P DFGR+ + + +++RE + DR + E+ Sbjct: 57 -----AIERDEDGEI----ISEQDETPEDFGRLGASVVRDAVYRRLREVKTDRDFDEYAG 107 Query: 137 KVGEIISGTV----KRVEYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYD 188 G+ +SG V + E G +V LG DG++ E I ENL+ GDRVK YI Sbjct: 108 LEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHGDRVKCYIVG 167 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+AV ++ + Sbjct: 168 VGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKIAVHATTKGV 227 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V VLDE+ Sbjct: 228 NAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGVEVLDEENQI 287 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 288 ARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDE 325 >gi|203288228|ref|YP_002223243.1| N-utilization substance protein A [Borrelia recurrentis A1] gi|201085448|gb|ACH95022.1| N-utilization substance protein A [Borrelia recurrentis A1] Length = 494 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 139/428 (32%), Positives = 249/428 (58%), Gaps = 17/428 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+ Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I + A+ + +D V + P F R+++Q AKQ ++ E + Sbjct: 80 EVKNNVMEILVDDAKTFE-VVD-NEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D Sbjct: 198 KGRNGIEVILSRTHPKFIAELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V ++DED+ + Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS-INRQKDFNERTQFFMQAINV 368 V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + +F + T F M Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDT-FEM----F 372 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 D+II +V+E +I++I+ ++ D++ ++ R + ++ + K+ Sbjct: 373 DKIIQD--------NVQEDEFEEINKISELKVLDDDIVAKLIQRDLDDIDNFLNASEDKL 424 Query: 429 RELGVSEE 436 ELG++ E Sbjct: 425 FELGITYE 432 >gi|37523058|ref|NP_926435.1| transcription elongation factor NusA [Gloeobacter violaceus PCC 7421] gi|35214061|dbj|BAC91430.1| glr3489 [Gloeobacter violaceus PCC 7421] Length = 383 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 204/367 (55%), Gaps = 29/367 (7%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIR------------VEINPETG 58 Q + ++ ++++ + V + ++++K T D R VE++ + Sbjct: 11 QQIETISRQRNLPKHAVKEALIEALKKGYERFRKTYRDPRENSEEMAFDNFIVELDTDRE 70 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM-DFGRVAVQSAKQ 116 + +VE V + +I+L R+ P + GG VV D P DFGR+A KQ Sbjct: 71 GFRVLATKTIVETVSDTDQEIALIEVREVAPDAEPGGTVVVDVTPEKGDFGRMAAIQTKQ 130 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDET 170 V+ QK+R+ +R EF++ G ++ V R E +VI + + G + ++E Sbjct: 131 VLSQKLRDQQRKLIQEEFRELEGTVLQARVMRFEGRSVICAVSSGFGQNEVEAELPKNEQ 190 Query: 171 ISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + E R G K ++ V +RGPQ+L+SR +V LF EVPEI + IV++ AV Sbjct: 191 LPNEPYRIGSAFKVFLRKVWEGSRRGPQLLVSRADAGLVVYLFANEVPEIEDEIVRIVAV 250 Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD Sbjct: 251 AREANPPSRTVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPD 310 Query: 283 SATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V L D D + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 311 PATYISNALSPARVIQVRLVDPDARQAHVIVPDDQLSLAIGKEGQNVRLAARLTGWKIDI 370 Query: 342 ITEEEDS 348 E S Sbjct: 371 KKSSEYS 377 >gi|298372250|ref|ZP_06982240.1| transcription termination factor NusA [Bacteroidetes oral taxon 274 str. F0058] gi|298275154|gb|EFI16705.1| transcription termination factor NusA [Bacteroidetes oral taxon 274 str. F0058] Length = 417 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/326 (34%), Positives = 196/326 (60%), Gaps = 3/326 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID +LS++ ++ +K ++YG+ + NP+ GD ++R VVE+ VE+ Sbjct: 20 KNIDNSTMLSILEEAFRKVISNIYGSDQNYDFIFNPDKGDFEIWRNRIVVEDDKVEDPHL 79 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR ++G V + + FGR AV + Q++ K+ + ++D Y ++ Sbjct: 80 EISLSDARKIADDYEVGEEVQEQVDINSFGRRAVLNLSQILSAKIVDVQKDSLYTKYSQL 139 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G+IIS V +V +++ D N++ ++ + + + + + G+ +++ + V P Sbjct: 140 LGQIISAEVYQVWKKEILLLDDNNNEILLPKADQLPNDFFKKGEIIRAVVARVDNNNNNP 199 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ +SRT P F+ +L EVPEI +G++ +K + R PG +AK+AV S D IDPVGACVG Sbjct: 200 KIYVSRTLPLFLERLLEREVPEIQDGLITIKKIVRLPGEKAKIAVESYDDRIDPVGACVG 259 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RG+R+Q ++ EL E ID++ ++ + + ++ AL PA VT +V+D + R V + E Sbjct: 260 IRGNRIQPIIRELNKESIDVINYTSNPSLYIARALAPAKVTSIVIDNENKRANVYINPED 319 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDII 342 +S AIG+ G N++LA QLTG+ I+II Sbjct: 320 ISSAIGKNGANIKLAIQLTGYHIEII 345 >gi|227488651|ref|ZP_03918967.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091545|gb|EEI26857.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51867] Length = 326 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 190/338 (56%), Gaps = 33/338 (9%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTM--SDIRVEINPETGDISLFRLLEVVEEVENYT 76 EK I + +L+ +A + A + S RVEI+P++G +++F Sbjct: 10 EKGISVEDLLTTIAQGLHSAYLQAHHLEDESSARVEIDPDSGAVTVF------------- 56 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 + RD D I + P DFGR+ + + +++RE + DR + E+ Sbjct: 57 -----AIERDEDGEI----ISEQDETPEDFGRLGASVVRDAVYRRLREVKTDRDFDEYAG 107 Query: 137 KVGEIISGTV----KRVEYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYD 188 G+ +SG V + E G +V LG DG++ E I ENL+ GDRVK YI Sbjct: 108 LEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHGDRVKCYIVG 167 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+AV ++ + Sbjct: 168 VGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKIAVHATTKGV 227 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V VLDE+ Sbjct: 228 NAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGVEVLDEENQI 287 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 288 ARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDE 325 >gi|219684959|ref|ZP_03539900.1| transcription elongation protein NusA [Borrelia garinii PBr] gi|219671697|gb|EED28753.1| transcription elongation protein NusA [Borrelia garinii PBr] Length = 482 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 236/392 (60%), Gaps = 9/392 (2%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +I K ++++ +I G + P F R+++Q AKQ ++ E + E Sbjct: 71 SLLEILEKDISKE---NIVEGDYAYIEINPKIFDRLSIQVAKQRTKNDLQGIEDNEILSE 127 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 FK K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 128 FKSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGK 187 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP+G Sbjct: 188 NGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPIGP 247 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V +LDED+ + V+V Sbjct: 248 CIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVV 307 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 +QLSLAIG+ GQNVRLA++L W ID+ T + K +E Q ++ N +++ Sbjct: 308 SDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQ--FAEMKANSEFKQETLEMFN--KVM 363 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F D+ +++ +K+ + + I +E Sbjct: 364 QDVVEEEQFEDISKISDLKLLDSSVISNLSKE 395 >gi|261338246|ref|ZP_05966130.1| transcription termination factor NusA [Bifidobacterium gallicum DSM 20093] gi|270276899|gb|EFA22753.1| transcription termination factor NusA [Bifidobacterium gallicum DSM 20093] Length = 381 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 192/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + V ++++++ A +RVE++ G +++ E+ VE E Sbjct: 11 LAKEQGIDTETVDEALSEALRLAYLKTPNAAKHVRVELDERAGTFTIWARDEIRVEPTEE 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D I++G D P DFGR+A +A+QVI Q R AE DR + F Sbjct: 71 -----------DPHGHIELGEEYDDT--PKDFGRLAAATARQVITQLFRRAEDDRIFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++++G +++ + NV V +G+ + ++ R E + E R GDR++ Y+ +V R Sbjct: 118 SGQKGKLMTGVIQQDVKDPTNVHVAVGDVEAILPRREQVPGERYRHGDRIRVYVVNVNRG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIIVSRSHPDLVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV-I 311 A +G GSRV+AV+ L +EKIDIV WS D A F+ AL PA V + D V Sbjct: 238 ALIGPGGSRVRAVMENLGNEKIDIVDWSDDPAKFIGAALSPANAAGVDVISDKNNTAVAY 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|221195874|ref|ZP_03568927.1| transcription termination factor NusA [Atopobium rimae ATCC 49626] gi|221184348|gb|EEE16742.1| transcription termination factor NusA [Atopobium rimae ATCC 49626] Length = 415 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 197/363 (54%), Gaps = 46/363 (12%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL- 66 E+++ + EK ID +L + S+ K+ + RV I+ TG + ++ L+ Sbjct: 4 EMMEALMTLCQEKHIDELYLLDRLEQSLAKSYADVLHLSYGARVTIDRTTGKVYVYELVP 63 Query: 67 --EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E EE Y + V P R A Q AK I VR+ Sbjct: 64 KGEPDEETGEYAEFDEVDVT------------------PEGTSRFAAQHAKNEIRALVRD 105 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV--------IRR-----DETI 171 A R + Y EF ++G+II+GTV + I+ + +GV +RR DE Sbjct: 106 AARQQIYEEFSHRIGDIITGTVLQSTPDFTIIKI--REGVEAELPHFDLRRFPEERDERP 163 Query: 172 SRENLRPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 E R+K+ I DVR E++ P +++SRTHP + +LF +EVPE+Y Sbjct: 164 FGERYGHNQRIKAIIIDVRNPNNAQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYE 223 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV +++V+R+PG R+K+AV SSD +DPVGACVG +GSRV+ VV+ELR E++D+V W Sbjct: 224 GIVSIRSVAREPGIRSKIAVSSSDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFD 283 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A V +AL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI Sbjct: 284 DPARCVASALSPARVSRVIIDAETRHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDI 343 Query: 342 ITE 344 E Sbjct: 344 KNE 346 >gi|114777564|ref|ZP_01452545.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] gi|114552035|gb|EAU54552.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] Length = 254 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 115/273 (42%), Positives = 164/273 (60%), Gaps = 19/273 (6%) Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + S+D S+DPVGACVGMRG+RVQAVV EL EKIDI+ W+ D A FV+NAL PA + +V+ Sbjct: 1 MISTDPSVDPVGACVGMRGARVQAVVNELHGEKIDIIEWTDDPAAFVVNALAPAEIERVM 60 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE V +E L++AIGRRGQNVRLAS L+GW I++++ E+ R ++ + Sbjct: 61 VDEATNTIEAAVSEENLAIAIGRRGQNVRLASDLSGWHIELMSTGEEKERRHEEVVKART 120 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + ++VDE A +LV EGF +EELA +IA+IEG D E A E+Q RAR L + Sbjct: 121 VFQEGLDVDEAFATVLVDEGFFSLEELAYCAAEDIAAIEGLDAEIAQELQKRARNVL--L 178 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D L++ E G + L +PG+ +I L + T+E LA + G Sbjct: 179 DQALKQGSEEAGSAVTLLDLPGMTREIAEQLAAREMTTVESLADAA-----------GDE 227 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 IE +G +++ +++II AR GW + Sbjct: 228 IEDIEGL------SREEADALIIAAREACGWFD 254 >gi|216264195|ref|ZP_03436187.1| transcription elongation protein NusA [Borrelia burgdorferi 156a] gi|221217568|ref|ZP_03589037.1| transcription elongation protein NusA [Borrelia burgdorferi 72a] gi|225550297|ref|ZP_03771256.1| transcription elongation protein NusA [Borrelia burgdorferi 118a] gi|215980668|gb|EEC21475.1| transcription elongation protein NusA [Borrelia burgdorferi 156a] gi|221192514|gb|EEE18732.1| transcription elongation protein NusA [Borrelia burgdorferi 72a] gi|225369165|gb|EEG98619.1| transcription elongation protein NusA [Borrelia burgdorferi 118a] Length = 482 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/392 (31%), Positives = 238/392 (60%), Gaps = 11/392 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + V+ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K ++++ +I G + P F R+++Q AKQ ++ E + EF Sbjct: 72 LLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEII 372 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKVM 363 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F ++ +++ +K+ + + I +E Sbjct: 364 QDVVEEEQFEEISKISDLKLLDPSVISNLSKE 395 >gi|111115635|ref|YP_710253.1| transcription elongation factor NusA [Borrelia afzelii PKo] gi|216263366|ref|ZP_03435361.1| transcription elongation protein NusA [Borrelia afzelii ACA-1] gi|110890909|gb|ABH02077.1| N-utilization substance protein A [Borrelia afzelii PKo] gi|215980210|gb|EEC21031.1| transcription elongation protein NusA [Borrelia afzelii ACA-1] Length = 482 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 239/393 (60%), Gaps = 11/393 (2%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLIVYAKKKIVEEVKD 70 Query: 75 YTCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +I K ++R+ +I G + P F R+++Q AKQ ++ E + E Sbjct: 71 SLLEILEKDISRE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSE 127 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 FK K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 128 FKSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGK 187 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG Sbjct: 188 NGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGP 247 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 248 CIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVV 307 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEI 371 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D++ Sbjct: 308 SDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKV 362 Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + ++ E F ++ +++ +K+ + + I +E Sbjct: 363 MQDVVEEEQFEEISKISDLKLLDSSVISNLSKE 395 >gi|203284696|ref|YP_002222436.1| N-utilization substance protein A [Borrelia duttonii Ly] gi|201084139|gb|ACH93730.1| N-utilization substance protein A [Borrelia duttonii Ly] Length = 494 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 139/428 (32%), Positives = 249/428 (58%), Gaps = 17/428 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+ Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I + A+ + +D V + P F R+++Q AKQ ++ E + Sbjct: 80 EVKNNVMEILVDDAKTFE-VVD-NEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D Sbjct: 198 KGRNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V ++DED+ + Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS-INRQKDFNERTQFFMQAINV 368 V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + +F + T F M Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDT-FEM----F 372 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 D+II +V+E +I++I+ ++ D++ ++ R + ++ + K+ Sbjct: 373 DKIIQD--------NVQEDEFEEINKISELKVLDDDIVAKLIQRDLDDIDNFLNASEDKL 424 Query: 429 RELGVSEE 436 ELG++ E Sbjct: 425 FELGITYE 432 >gi|227495147|ref|ZP_03925463.1| transcription termination factor NusA [Actinomyces coleocanis DSM 15436] gi|226831599|gb|EEH63982.1| transcription termination factor NusA [Actinomyces coleocanis DSM 15436] Length = 343 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 194/327 (59%), Gaps = 24/327 (7%) Query: 22 IDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISL 81 ID ++ + D++ K + G++ + R+EI+ +TG +++ ++ Sbjct: 13 IDGITLVKAIEDALLKVYHKMPGSIKEARIEIDRKTGKVAV----------------MAT 56 Query: 82 KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 + D +P G D P +FGR+A +A+ +I Q++REA+ + EF++K G + Sbjct: 57 EFDDDDNPI----GEFDDT--PKEFGRIATATARSIITQRIREADDSKVLGEFRNKTGTV 110 Query: 142 ISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLL 200 + GTV+ ++ +G + ++ E + E G +++Y+ +V R +RG ++ + Sbjct: 111 VVGTVEAHTNPHFTLLRVGEFEAILPESEKVPGETYEHGKVIRAYVLEVTRGERGARITV 170 Query: 201 SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGS 260 SR+HP F+ LF EVPEI G+V++K+V+R+ G R+K+AV +++ I+ GAC+G G Sbjct: 171 SRSHPNFVEALFAREVPEIAQGLVEIKSVAREAGHRSKIAVAATEEGINAKGACIGPMGR 230 Query: 261 RVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVPKEQLSL 319 RV+AV+TEL+ EKIDIV +S D A F+ N+L PA V+ V +D + VIVP Q SL Sbjct: 231 RVRAVMTELQGEKIDIVDYSTDPARFIANSLSPARVSTVTIDSLPEKKATVIVPDFQFSL 290 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEE 346 AIGR GQN RLA++L G+ IDI ++ E Sbjct: 291 AIGREGQNARLAARLCGFHIDIHSDTE 317 >gi|81300831|ref|YP_401039.1| transcription elongation factor NusA [Synechococcus elongatus PCC 7942] gi|81169712|gb|ABB58052.1| NusA antitermination factor [Synechococcus elongatus PCC 7942] Length = 441 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 208/371 (56%), Gaps = 34/371 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-----------MSDI 49 MV+ LE Q+ A++ +K + +V+ + +++ K T +I Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60 Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107 VE++ E + +V +VEN QI+L ++ P G +V + P DFG Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR- 166 R+A KQV+ QK+R+ +R EF+D ++ V R E +VI LG S G+ R Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVI--LGVSSGLGRP 178 Query: 167 -------RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPE 218 R E + +N R + ++ +V +RGPQ+++SR + +V LF EVPE Sbjct: 179 EVEAELPRREQLPNDNYRANATFRVFLKEVSEVPRRGPQLIVSRANAGLVVYLFENEVPE 238 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I +G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR Sbjct: 239 IQDGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRG 298 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI-EVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA V +V L + GRI V+V +QLSLAIG+ GQNVRL Sbjct: 299 EKIDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRL 358 Query: 331 ASQLTGWTIDI 341 A++LTGW IDI Sbjct: 359 AARLTGWKIDI 369 >gi|298490031|ref|YP_003720208.1| NusA antitermination factor ['Nostoc azollae' 0708] gi|298231949|gb|ADI63085.1| NusA antitermination factor ['Nostoc azollae' 0708] Length = 425 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 181/299 (60%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VE+V N QISL+ + P G VV D P +FGR+A KQV Sbjct: 72 FRVLSTKTIVEQVNNSDHQISLEEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D ++ V R E +VI+ + + G + + E + Sbjct: 132 LAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVTSGFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|50954461|ref|YP_061749.1| transcription elongation factor NusA [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950943|gb|AAT88644.1| transcription termination/antitermination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 332 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 108/249 (43%), Positives = 164/249 (65%), Gaps = 5/249 (2%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P DFGR+A +AKQVI Q++R+ D EF+ G+I++G +++ ++ +DLG+ Sbjct: 83 PSDFGRIAAFAAKQVINQRLRDLADDAVLGEFRGCEGDIVAGVIQQGPNPRMVHIDLGSV 142 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ +E + E G R++ Y+ V + +GP + +SRTHP + KLF +EVPEI + Sbjct: 143 EAILPPEEQVHGEEYPHGSRIRVYVTSVAKGPKGPSITVSRTHPTLVRKLFALEVPEIAS 202 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V++ +++R+ G R K+AV +++ ++ GAC+G G RV+AV EL EKIDIV +SP Sbjct: 203 GVVEIVSIAREAGHRTKIAVRATEPGVNAKGACIGELGQRVRAVTAELNSEKIDIVDYSP 262 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ATFV +AL PA VT V+DE + + +VP QLSLAIG+ GQN RLA++LTG ID Sbjct: 263 DLATFVSSALSPAKVTSAFVIDESLKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKID 322 Query: 341 IITEEEDSI 349 I + DSI Sbjct: 323 I---QPDSI 328 >gi|224533442|ref|ZP_03674035.1| transcription elongation protein NusA [Borrelia burgdorferi CA-11.2a] gi|225549360|ref|ZP_03770332.1| transcription elongation protein NusA [Borrelia burgdorferi 94a] gi|224513404|gb|EEF83762.1| transcription elongation protein NusA [Borrelia burgdorferi CA-11.2a] gi|225369988|gb|EEG99429.1| transcription elongation protein NusA [Borrelia burgdorferi 94a] gi|312148269|gb|ADQ30928.1| transcription elongation protein NusA [Borrelia burgdorferi JD1] Length = 482 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 238/392 (60%), Gaps = 11/392 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K ++++ +I G + P F R+++Q AKQ ++ E + EF Sbjct: 72 LLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEII 372 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKVM 363 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F ++ +++ +K+ + + I +E Sbjct: 364 QDVVEEEQFEEISKISDLKLLDPSVISNLSKE 395 >gi|257784634|ref|YP_003179851.1| NusA antitermination factor [Atopobium parvulum DSM 20469] gi|257473141|gb|ACV51260.1| NusA antitermination factor [Atopobium parvulum DSM 20469] Length = 413 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 199/363 (54%), Gaps = 46/363 (12%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL- 66 E+++ + EK ID +L + S+ K+ + RV I+ TG + ++ L+ Sbjct: 4 EMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATGRVYVYELVP 63 Query: 67 --EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E EE YT + V P D R+A Q AK I VR Sbjct: 64 KGEPDEETGEYTEFDEVDVT------------------PPDTSRIAAQHAKAEIKTLVRN 105 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-------------IRRDETI 171 A R + Y EF+ +VG+II+GTV + I+ + +GV RDE Sbjct: 106 AARAQIYDEFRGRVGDIITGTVLQSTPDFTIIKI--REGVEAELPHFDQRRFPDERDERP 163 Query: 172 SRENLRPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + E R+K+ I DVR E++ P +++SRTHP + +LF +EVPE+Y+ Sbjct: 164 AGERYLHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYD 223 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V +++++R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V W Sbjct: 224 GVVSIRSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFD 283 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+A V +AL PA V++V++D G VIVP +QLSLAIG+ GQN RLA++LTG IDI Sbjct: 284 DAARCVASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDI 343 Query: 342 ITE 344 E Sbjct: 344 KNE 346 >gi|226320845|ref|ZP_03796397.1| transcription elongation protein NusA [Borrelia burgdorferi 29805] gi|226233711|gb|EEH32440.1| transcription elongation protein NusA [Borrelia burgdorferi 29805] gi|312149161|gb|ADQ29232.1| transcription elongation protein NusA [Borrelia burgdorferi N40] Length = 482 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 238/392 (60%), Gaps = 11/392 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K ++++ +I G + P F R+++Q AKQ ++ E + EF Sbjct: 72 LLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEII 372 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKVM 363 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F ++ +++ +K+ + + I +E Sbjct: 364 QDVVEEEQFEEISKISDLKLLDPSVISNLSKE 395 >gi|304390822|ref|ZP_07372774.1| transcription termination factor NusA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325705|gb|EFL92951.1| transcription termination factor NusA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 328 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 191/336 (56%), Gaps = 25/336 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVEN 74 V EK +D + +++ + ++ KA R+ G + RVE++ +TG++ + V+E++ Sbjct: 11 VEAEKGMDMNSLINTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL-----VKELDE 65 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ + P DFGR A + K VIIQ+ +E E +F Sbjct: 66 DGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDKAVLGDF 108 Query: 135 KDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 KD+VG+++SG V ++ V+LG+ +G+I E + E + G R+ Y+ R Sbjct: 109 KDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVLAASRGF 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ I+ GA Sbjct: 169 KGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE V+V Sbjct: 229 CIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKRLARVVV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 289 PDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTENG 324 >gi|315656401|ref|ZP_07909290.1| transcription termination factor NusA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492960|gb|EFU82562.1| transcription termination factor NusA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 328 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 190/336 (56%), Gaps = 25/336 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVEN 74 V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ + V+E++ Sbjct: 11 VEAEKGMDMNSLIDTVEQALLKAYRNQSGAEKEHSRVEVDRKTGEVRVL-----VKELDE 65 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ + P DFGR A + K VIIQ+ +E E +F Sbjct: 66 DGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDKAVLGDF 108 Query: 135 KDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 KD+VG+++SG V ++ V+LG+ +G+I E + E + G R+ Y+ R Sbjct: 109 KDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVLAASRGF 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ I+ GA Sbjct: 169 KGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE V+V Sbjct: 229 CIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKRLARVVV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 289 PDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTENG 324 >gi|148273335|ref|YP_001222896.1| transcription elongation factor NusA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831265|emb|CAN02221.1| putative transcriptional termination/antitermination factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 335 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 113/249 (45%), Positives = 161/249 (64%), Gaps = 5/249 (2%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P DFGR+A +AKQVI Q++R+ DR EFK + G+I++G V++ +I VDLG Sbjct: 85 PSDFGRIAAFAAKQVINQRLRDIGDDRILGEFKGREGDIVAGVVQQGPNPRMIHVDLGTI 144 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ +E + E G R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI Sbjct: 145 EAILPPEEQVPGEKYVHGSRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIAQ 204 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V++ +++R+ G R K+AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S Sbjct: 205 GLVEIVSLAREAGHRTKIAVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSE 264 Query: 282 DSATFVINALRPAIVT-KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 FV NAL PA VT V+D+ + +VP QLSLAIG+ GQN RLA++LTG ID Sbjct: 265 SLPVFVGNALSPARVTSSFVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKID 324 Query: 341 IITEEEDSI 349 I + DSI Sbjct: 325 I---QPDSI 330 >gi|315655685|ref|ZP_07908583.1| transcription termination factor NusA [Mobiluncus curtisii ATCC 51333] gi|315489749|gb|EFU79376.1| transcription termination factor NusA [Mobiluncus curtisii ATCC 51333] Length = 328 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 190/336 (56%), Gaps = 25/336 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVEN 74 V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ + V+E++ Sbjct: 11 VEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL-----VKELDE 65 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ + P DFGR A + K VIIQ+ +E E +F Sbjct: 66 DGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDKAVLGDF 108 Query: 135 KDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 KD+VG+++SG V ++ V+LG+ +G+I E + E + G R+ Y+ R Sbjct: 109 KDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVLAASRGF 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ I+ GA Sbjct: 169 KGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE V+V Sbjct: 229 CIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKRLARVVV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 289 PDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTENG 324 >gi|306836351|ref|ZP_07469329.1| transcription termination factor NusA [Corynebacterium accolens ATCC 49726] gi|304567711|gb|EFM43298.1| transcription termination factor NusA [Corynebacterium accolens ATCC 49726] Length = 338 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/319 (38%), Positives = 190/319 (59%), Gaps = 18/319 (5%) Query: 33 DSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSID 92 D ++ A +L + D R + + FR+ +++ T +S+ V +RDP + Sbjct: 21 DLLEAIASALLYSYLDYRESTAEGKAEGTKFRV-----DIDTTTGAVSVIVT-ERDP--E 72 Query: 93 IGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 G V S+ P +FGRV ++ ++ I++K+REAE +R + + + G ++SG V+R + Sbjct: 73 TGEVTSEYDDTPDNFGRVGARAVREAILRKLREAEAERTFDSYSELSGRVVSGIVQRDAH 132 Query: 152 GN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 N V+V LG+ DG++ E I E L+ GDR+K+Y+ V R Q+ LSRT Sbjct: 133 ANARGIVVVQLGSELESQDGILLPAEQIPGEKLQHGDRIKAYVVGVNRNGANVQINLSRT 192 Query: 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQ 263 HP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV ++ GAC+G RG RV Sbjct: 193 HPELVRGLFELEVPEVADGSVEMIAIAREAGHRSKVAVIGHAKGLNAKGACIGPRGQRVN 252 Query: 264 AVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIG 322 ++ +L EKIDI+ +S D +V NAL P+ V KV VLD + VIVP QLSLAIG Sbjct: 253 NIMRQLGGEKIDIIDYSEDPTVYVGNALAPSKVIKVTVLDSEEQVARVIVPDYQLSLAIG 312 Query: 323 RRGQNVRLASQLTGWTIDI 341 + GQN RLA++LTGW IDI Sbjct: 313 KEGQNARLAARLTGWKIDI 331 >gi|225551696|ref|ZP_03772640.1| transcription elongation protein NusA [Borrelia sp. SV1] gi|225371723|gb|EEH01149.1| transcription elongation protein NusA [Borrelia sp. SV1] Length = 482 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 238/392 (60%), Gaps = 11/392 (2%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K ++++ +I G + P F R+++Q AKQ ++ E + EF Sbjct: 72 FLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV-DEII 372 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++F + + + D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFA-----EMKANSEFKQETLEMFDKVM 363 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F ++ +++ +K+ + + I +E Sbjct: 364 QDVVEEEQFEEISKISDLKLLDPSVISDLSKE 395 >gi|313140899|ref|ZP_07803092.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] gi|313133409|gb|EFR51026.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] Length = 344 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 199/334 (59%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E+ Sbjct: 13 LAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTED 72 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ ++G D P +FGR+A +A+QVI Q R+AE D+ + F Sbjct: 73 -----------DPHPAPELGEEYDDT--PRNFGRLAAATARQVIGQLFRKAEDDKVFGAF 119 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 120 SGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVARG 179 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 180 VKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPKG 239 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V V+ E Sbjct: 240 ALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIAF 299 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 300 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTE 333 >gi|298345265|ref|YP_003717952.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|298235326|gb|ADI66458.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] Length = 328 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 189/336 (56%), Gaps = 25/336 (7%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEVVEEVEN 74 V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ + V E++ Sbjct: 11 VEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL-----VNELDE 65 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ + P DFGR A + K VIIQ+ +E E +F Sbjct: 66 DGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDKAVLGDF 108 Query: 135 KDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 KD+VG+++SG V ++ V+LG+ +G+I E + E + G R+ Y+ R Sbjct: 109 KDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVLAASRGF 168 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ I+ GA Sbjct: 169 KGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKGINAKGA 228 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 C+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE V+V Sbjct: 229 CIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKRLARVVV 288 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 289 PDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTENG 324 >gi|308235445|ref|ZP_07666182.1| transcription elongation factor NusA [Gardnerella vaginalis ATCC 14018] gi|311114226|ref|YP_003985447.1| transcription termination factor NusA [Gardnerella vaginalis ATCC 14019] gi|310945720|gb|ADP38424.1| transcription termination factor NusA [Gardnerella vaginalis ATCC 14019] Length = 349 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 165/257 (64%), Gaps = 4/257 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR--VEYGNVIVDLGN 160 P DFGR+A +A+QVI Q R+ E DR + F + G++I+G V++ + N+ V +G+ Sbjct: 86 PRDFGRLAAATARQVITQLFRKVEDDRVFGAFSGQKGKLINGVVQQDSKDPSNIHVAVGD 145 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + ++ R E + E R G+R++ Y+ +V R RGP++++SR+HP + +LF EVPE+ Sbjct: 146 VEAILPRREQVPGERYRHGERIRVYVVNVARGLRGPEIVVSRSHPDLVRRLFEREVPELV 205 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 +G V + A++R+ G+R K+AV ++ ++P GA +G GSRV+AV+ L EKIDIV WS Sbjct: 206 SGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPGGSRVRAVMENLGPEKIDIVDWS 265 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL PA T+V V+ E + QLSLAIG+ GQN RLA++LTGW I Sbjct: 266 EDPAKFVAAALSPATATQVHVVSEKSQTAVAFIHDSQLSLAIGKEGQNARLAAKLTGWKI 325 Query: 340 DIITEEEDSINRQKDFN 356 I + EE + +Q++ N Sbjct: 326 GIESAEEHA-KKQEEMN 341 >gi|224283743|ref|ZP_03647065.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] gi|310287990|ref|YP_003939249.1| transcription elongation factor NusA [Bifidobacterium bifidum S17] gi|311064863|ref|YP_003971589.1| n utilization substance protein A NusA [Bifidobacterium bifidum PRL2010] gi|309251927|gb|ADO53675.1| transcription elongation factor NusA [Bifidobacterium bifidum S17] gi|310867183|gb|ADP36552.1| NusA N utilization substance protein A [Bifidobacterium bifidum PRL2010] Length = 342 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 199/334 (59%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E+ Sbjct: 11 LAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ ++G D P +FGR+A +A+QVI Q R+AE D+ + F Sbjct: 71 -----------DPHPAPELGEEYDDT--PRNFGRLAAATARQVIGQLFRKAEDDKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 VKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTE 331 >gi|227503407|ref|ZP_03933456.1| transcription elongation factor NusA [Corynebacterium accolens ATCC 49725] gi|227075910|gb|EEI13873.1| transcription elongation factor NusA [Corynebacterium accolens ATCC 49725] Length = 338 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 117/281 (41%), Positives = 176/281 (62%), Gaps = 13/281 (4%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +++ T +S+ V +RDP + G V S+ P +FGRV ++ ++ I++K+REAE +R Sbjct: 54 DIDTTTGAVSVIVT-ERDP--ETGEVTSEYDDTPDNFGRVGARAVREAILRKLREAEAER 110 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 + + + G ++SG V+R + N V+V LG+ DG++ E I E L+ GDR Sbjct: 111 TFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIPGEKLQHGDR 170 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV Sbjct: 171 IKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIAREAGHRSKVAV 230 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL P+ V KV V Sbjct: 231 IGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALAPSKVIKVTV 290 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 LD + VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 291 LDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDI 331 >gi|284052678|ref|ZP_06382888.1| transcription elongation factor NusA [Arthrospira platensis str. Paraca] gi|291568133|dbj|BAI90405.1| transcription termination factor NusA [Arthrospira platensis NIES-39] Length = 415 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 183/303 (60%), Gaps = 17/303 (5%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQS 113 E G L + L +VE+ N QISLK ++ P ++G V+ + P +FGR+A Sbjct: 68 EEGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAELGDTVTLDVTPEQNEFGRMAAIQ 127 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRR 167 KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + G + + Sbjct: 128 TKQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPK 187 Query: 168 DETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++ Sbjct: 188 REQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRI 247 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ W Sbjct: 248 VAVAREANPPSNYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRW 307 Query: 280 SPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 SPD + ++ NAL PA V +V L + + R V+V ++QLSLAIG+ GQNVRLA++LTGW Sbjct: 308 SPDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWK 367 Query: 339 IDI 341 IDI Sbjct: 368 IDI 370 >gi|193214185|ref|YP_001995384.1| transcription elongation factor NusA [Chloroherpeton thalassium ATCC 35110] gi|193087662|gb|ACF12937.1| NusA antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 531 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 205/357 (57%), Gaps = 27/357 (7%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ D A ++ D+V ++ D+IQK R Y + RV INP+ GD ++ L +VVE Sbjct: 30 RLKDKKADTNAVKMDIV-DLLRDTIQKQLRKDYDPEVEARVIINPDRGDFEVYILKQVVE 88 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVS-DPLPPMDF-GRVAVQSAKQVIIQKVREAERD 128 E++ + +ISL+ A++ D S+++G P+ D+ R ++Q KQ + +K+R+AER Sbjct: 89 EIDLPSIEISLEEAQEIDDSLELGDFYEVGPIHLEDYLTRKSIQIIKQAVQKKMRDAERQ 148 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVK 183 Y E +KVGE++S V +V I + ++ E + ++N R R++ Sbjct: 149 AIYEECLEKVGEVVSAEVHQVRQKEAIFTYNTTKDHKVELLLPNTEKMPKDNPRKTPRMR 208 Query: 184 SYIYDVRRE----------------QRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 Y+ + RE + GP +V++SRT +F+ KLF EVPEIY G++ V Sbjct: 209 LYVKRIEREKIRVKLEDGTEVEREREDGPMKVIVSRTDDRFLHKLFESEVPEIYEGLIVV 268 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R PG RAK++V S+ S IDPVGACVG RG R+Q +V EL +E ID++ +S + + Sbjct: 269 KGIARVPGERAKVSVESTSSRIDPVGACVGHRGKRIQNIVRELNNENIDVICFSDEPQIY 328 Query: 287 VINALRPAIV--TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + AL+PA + V +D + V++ +Q+ AIGR G N+ LA +LTG+ I+I Sbjct: 329 IARALQPAKIDPMTVHVDPKTRKSRVMLKPDQIKYAIGRNGNNIHLAEKLTGYEIEI 385 >gi|308233945|ref|ZP_07664682.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] gi|328943957|ref|ZP_08241422.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] gi|327491926|gb|EGF23700.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] Length = 414 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/265 (41%), Positives = 168/265 (63%), Gaps = 25/265 (9%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162 P + R+ VQ KQ + + +R A R + + EF +VG++I+GTV + I+ + D Sbjct: 84 PKEASRLVVQHTKQELAEIIRSAGRQQIFEEFSKRVGDLITGTVLQTTSDFAIIKI--RD 141 Query: 163 GV-------------IRRDETISRENLRPGDRVKSYIYDVRR----------EQRGPQVL 199 GV R+E + E+ R+++ I +VR E++ P ++ Sbjct: 142 GVEAELPYFDPHRYPDERNERPANEHYAHNQRLRALIVEVRDPHANQQQIRGERQRPSIV 201 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 +SRTHP + +LF +EVPEI++G+V + +V+R+PG R+K+AV S+D +DPVGACVG +G Sbjct: 202 VSRTHPDLISRLFELEVPEIFDGVVSIASVAREPGIRSKIAVSSTDPHLDPVGACVGPKG 261 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 SRV+ VV+ELR E++D+V+WS D A V NAL PA V++V++D++ VIVP +QLSL Sbjct: 262 SRVRTVVSELRGERVDVVMWSDDPAINVANALSPAKVSRVLVDKENNYATVIVPDDQLSL 321 Query: 320 AIGRRGQNVRLASQLTGWTIDIITE 344 AIG+ GQN RLA++LTG IDI E Sbjct: 322 AIGKEGQNARLAARLTGMHIDIKNE 346 >gi|298253047|ref|ZP_06976839.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1] gi|297532442|gb|EFH71328.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1] Length = 360 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 17/335 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ I+ + + +A++++ A +RVE++ G +++ E Sbjct: 11 LAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDE-------- 62 Query: 76 TCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 I K D P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 63 ---IPGKPTEDNPYPAPTLGEEYDDT--PHDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + QLSLAIG+ GQN RLA++LTGW I I + EE Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEE 332 >gi|170782217|ref|YP_001710550.1| transcription elongation factor NusA [Clavibacter michiganensis subsp. sepedonicus] gi|169156786|emb|CAQ01949.1| transcription elongation protein NusA [Clavibacter michiganensis subsp. sepedonicus] Length = 335 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/249 (44%), Positives = 162/249 (65%), Gaps = 5/249 (2%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P DFGR+A +A+QVI Q++R+ DR EFK + G+I++G +++ +I VDLG Sbjct: 85 PSDFGRIAAFAARQVINQRLRDIGDDRILGEFKGREGDIVAGVIQQGPNPRMIHVDLGTI 144 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ +E + E G R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI + Sbjct: 145 EAILPPEEQVPGEKYVHGSRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIAS 204 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V++ +++R+ G R K+AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S Sbjct: 205 GLVEIVSLAREAGHRTKIAVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSE 264 Query: 282 DSATFVINALRPAIVT-KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 FV NAL PA VT V+D+ + +VP QLSLAIG+ GQN RLA++LTG ID Sbjct: 265 SLPVFVGNALSPARVTSSFVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKID 324 Query: 341 IITEEEDSI 349 I + DSI Sbjct: 325 I---QPDSI 330 >gi|328948922|ref|YP_004366259.1| NusA antitermination factor [Treponema succinifaciens DSM 2489] gi|328449246|gb|AEB14962.1| NusA antitermination factor [Treponema succinifaciens DSM 2489] Length = 484 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 141/420 (33%), Positives = 221/420 (52%), Gaps = 25/420 (5%) Query: 9 LLQIADAV---AYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFR 64 + ++ADA+ + EK ID + + I A + +G D V+ + D++++ Sbjct: 1 MSEMADAIRALSAEKGIDESSIRQTIERMILAAYQKSFGKGYDNCIVKFADDMSDVNVYA 60 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVR 123 VV+ V + +I L+ A+ P I + PL P DF R AV KQ + + Sbjct: 61 RKTVVDGVYDPVIEIELEEAQKLAPEAVIHDTLDIPLDPKRDFERGAVSVGKQEAHKDLN 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E + E+K+K+G+II G +R GN+ V+LG +GV+ RE DR++ Sbjct: 121 ENSSKKLLDEYKEKLGQIIIGYYQREHKGNIYVELGKVEGVLPVKYQSPREVYEKNDRIR 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I DV++ G QV+LSRT F+ + +EVPEI + + VK++SR+PG R K+AV S Sbjct: 181 ALIKDVKKVPSGIQVVLSRTDENFVKSILELEVPEIQDNTIVVKSISREPGYRTKIAVAS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302 + +DPVGACVG++G R+Q V+ EL EKID++ + D F+ NAL PA V VV+ D Sbjct: 241 NKIDVDPVGACVGLKGVRIQNVIRELEGEKIDVLRYDEDPHVFIKNALSPAEVKHVVIKD 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINR------- 351 + +V E S+AIG++G NVRLA++L W+ID+ TE +ED + Sbjct: 301 AEKREALAVVSDENFSIAIGKQGLNVRLANRLCNWSIDVKTEAMVTDEDLVENDTRRAAE 360 Query: 352 ------QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + E Q VD+ +A +L G+ D+E V E ++ G D+ T Sbjct: 361 ELFGGSENESYEEILTVAQLPGVDQRVAEILKEAGYDDIE--VFVSSYESGALNGLDDVT 418 >gi|297242938|ref|ZP_06926876.1| transcription elongation factor NusA [Gardnerella vaginalis AMD] gi|296889149|gb|EFH27883.1| transcription elongation factor NusA [Gardnerella vaginalis AMD] Length = 360 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 17/335 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ I+ + + +A++++ A +RVE++ G +++ E Sbjct: 11 LAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDE-------- 62 Query: 76 TCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 I K D P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 63 ---IPGKPTEDNPYPAPTLGEEYDDT--PRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + QLSLAIG+ GQN RLA++LTGW I I + EE Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEE 332 >gi|257126084|ref|YP_003164198.1| transcription elongation factor NusA [Leptotrichia buccalis C-1013-b] gi|257050023|gb|ACV39207.1| NusA antitermination factor [Leptotrichia buccalis C-1013-b] Length = 414 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 208/359 (57%), Gaps = 6/359 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+ +F + Sbjct: 9 FLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVFSQRLI 68 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++QKVRE E+ Sbjct: 69 VENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKR 128 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +FK+ I+S V++ E GN+ +D+ + ++ E +N +RVK Y+ Sbjct: 129 NIFNKFKEIENSIVSANVRKTDEKGNLYIDINGLEAIVPFKELSPTDNFVQNERVKIYVG 188 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V + + +SR + + L +EVPEI I+++K ++R+ GSRAK+AV+S D + Sbjct: 189 NVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKVAVYSEDEN 248 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL----DE 303 +D GAC+G G R+Q ++ ELR EKIDIV+W+ D FV NAL PA V V + +E Sbjct: 249 LDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLVEIVEGEEE 308 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE-EDSINRQKDFNERTQF 361 + +V+V + QLSLAIG++GQN RLA++L G IDI TE E N + + E T F Sbjct: 309 NTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEPFEIEQNDEYELEEETAF 367 >gi|283782785|ref|YP_003373539.1| transcription termination factor NusA [Gardnerella vaginalis 409-05] gi|283441834|gb|ADB14300.1| transcription termination factor NusA [Gardnerella vaginalis 409-05] Length = 360 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 17/335 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ I+ + + +A++++ A +RVE++ G +++ E Sbjct: 11 LAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDE-------- 62 Query: 76 TCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 I K D P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 63 ---IPGKPTEDNPYPAPTLGEEYDDT--PRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + QLSLAIG+ GQN RLA++LTGW I I + EE Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEE 332 >gi|209527729|ref|ZP_03276225.1| NusA antitermination factor [Arthrospira maxima CS-328] gi|209491850|gb|EDZ92209.1| NusA antitermination factor [Arthrospira maxima CS-328] Length = 415 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 182/303 (60%), Gaps = 17/303 (5%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQS 113 E G L + L +VE+ N QISLK ++ P +G V+ + P +FGR+A Sbjct: 68 EEGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAQLGDTVTLDVTPEQNEFGRMAAIQ 127 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRR 167 KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + G + + Sbjct: 128 TKQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPK 187 Query: 168 DETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++ Sbjct: 188 REQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRI 247 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ W Sbjct: 248 VAVAREANPPSNHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRW 307 Query: 280 SPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 SPD + ++ NAL PA V +V L + + R V+V ++QLSLAIG+ GQNVRLA++LTGW Sbjct: 308 SPDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWK 367 Query: 339 IDI 341 IDI Sbjct: 368 IDI 370 >gi|255325207|ref|ZP_05366313.1| transcription termination factor NusA [Corynebacterium tuberculostearicum SK141] gi|255297772|gb|EET77083.1| transcription termination factor NusA [Corynebacterium tuberculostearicum SK141] Length = 338 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 157/248 (63%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGRV Q+ ++ I++K+REAE +R Y + + G ++SG V+R N V+V L Sbjct: 84 PENFGRVGAQAVREAILRKLREAEAERTYDSYSELTGRVVSGIVQRDARANARGIVVVQL 143 Query: 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G+ DG++ E I E L GDR+K+Y+ V R Q+ LSRTHP+ + LF + Sbjct: 144 GSELESQDGILLPAEQIPGEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFEL 203 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPE+ +G V++ A++R+ G R+K+AV ++ GAC+G RG RV ++ +L EKI Sbjct: 204 EVPEVADGSVEMIAIAREAGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKI 263 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ +S D +V NAL P+ V KV V+D + V+VP QLSLAIG+ GQN RLA++ Sbjct: 264 DIIDFSEDPTVYVGNALAPSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAAR 323 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 324 LTGWKIDI 331 >gi|189440604|ref|YP_001955685.1| transcription elongation factor NusA [Bifidobacterium longum DJO10A] gi|189429039|gb|ACD99187.1| Transcription elongation factor [Bifidobacterium longum DJO10A] Length = 355 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 198/334 (59%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + K+ + D + P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPYPVP-KLGEEYDDT------------PRDFGRLAAATARQVITQLFRRAEDEKVFGSF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|213693052|ref|YP_002323638.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524513|gb|ACJ53260.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459229|dbj|BAJ69850.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 194/333 (58%), Gaps = 15/333 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ ID + +A++++ A RVE++ +G+ +++ E+ E Sbjct: 11 LAAEQGIDPGTLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 + K+ + D + P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPHPAPKLGEEYDDT------------PRDFGRLAAATARQVITQLFRRAEDEKVFGAFS 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 GQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARGI 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA Sbjct: 179 KGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E + Sbjct: 239 LIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAFI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|239621506|ref|ZP_04664537.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454835|ref|YP_003661979.1| NusA antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|239515381|gb|EEQ55248.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184267|gb|ADH01149.1| NusA antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 355 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 197/334 (58%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPY-----------PAPKLGEEYDDT--PRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|227546511|ref|ZP_03976560.1| transcription elongation factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133908|ref|YP_004001247.1| nusa [Bifidobacterium longum subsp. longum BBMN68] gi|322689895|ref|YP_004209629.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis 157F] gi|322691836|ref|YP_004221406.1| transcription elongation factor NusA [Bifidobacterium longum subsp. longum JCM 1217] gi|227213060|gb|EEI80939.1| transcription elongation factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516439|emb|CBK70055.1| transcription termination factor NusA [Bifidobacterium longum subsp. longum F8] gi|311773202|gb|ADQ02690.1| NusA [Bifidobacterium longum subsp. longum BBMN68] gi|320456692|dbj|BAJ67314.1| transcription elongation factor NusA [Bifidobacterium longum subsp. longum JCM 1217] gi|320461231|dbj|BAJ71851.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 198/334 (59%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + K+ + D + P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPYPVP-KLGEEYDDT------------PRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|294786395|ref|ZP_06751649.1| transcription termination factor NusA [Parascardovia denticolens F0305] gi|294485228|gb|EFG32862.1| transcription termination factor NusA [Parascardovia denticolens F0305] Length = 372 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 195/345 (56%), Gaps = 15/345 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ ID + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 11 LAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIPQE---- 66 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A D P +G D P DFGR A A+QVI R+A D+ + F Sbjct: 67 ------PTAEDPHPRPALGEEYDDT--PEDFGRQAAYIARQVITALFRKAADDKIFGAFA 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ V R Sbjct: 119 GQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVVSVNRGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ ++P GA Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G RV+AV+ L DEKIDIV WS D A FV AL PA KV V+ E ++ Sbjct: 239 LIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNKTTLALI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +Q+SLAIG+ GQN RLA++LTGW I I + E+ + K E Sbjct: 299 HDDQMSLAIGKEGQNARLAAKLTGWKIAIDSYEKSKAEQAKKAQE 343 >gi|291457236|ref|ZP_06596626.1| transcription termination factor NusA [Bifidobacterium breve DSM 20213] gi|291381071|gb|EFE88589.1| transcription termination factor NusA [Bifidobacterium breve DSM 20213] Length = 351 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 196/334 (58%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ G +++ ++ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERAGSFTVWAADDIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ ++G D P DFGR+A +A+QVI Q R+ E ++ + F Sbjct: 71 -----------DPHPAPELGEEYDDT--PHDFGRLAAATARQVITQLFRKVEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++++G +++ + NV V +G + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLVTGIIQQDASDPTNVHVAMGEVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R KLAV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKLAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPSGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|19553191|ref|NP_601193.1| transcription elongation factor NusA [Corynebacterium glutamicum ATCC 13032] gi|62390827|ref|YP_226229.1| transcription elongation factor NusA [Corynebacterium glutamicum ATCC 13032] gi|145295891|ref|YP_001138712.1| transcription elongation factor NusA [Corynebacterium glutamicum R] gi|21324757|dbj|BAB99380.1| Transcription terminator [Corynebacterium glutamicum ATCC 13032] gi|41326165|emb|CAF20328.1| PUTATIVE TRANSCRIPTIONAL TERMINATION/ANTITERMINATION FACTOR [Corynebacterium glutamicum ATCC 13032] gi|140845811|dbj|BAF54810.1| hypothetical protein [Corynebacterium glutamicum R] Length = 332 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 110/248 (44%), Positives = 157/248 (63%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDL 158 P +FGRV+ ++ + I++ +REAE R + + D G ++SG V + E G +IV L Sbjct: 80 PSNFGRVSARAVRDAIVKSLREAEASRAFDAYADYEGTVVSGIVQADARAAERGIIIVQL 139 Query: 159 G----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G N DGV+ E I E L+ GDRVK ++ V + Q+ LSRTHP+ + +LF + Sbjct: 140 GTEADNQDGVLLPAEQIPGEKLKHGDRVKCFVVGVGKGNTDIQINLSRTHPELVRRLFEL 199 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 E+PE+ +G V++ A+SR+ G R+K+AV + +++ GAC+G RG RV ++ EL EKI Sbjct: 200 EIPEVADGSVEIVAISREAGHRSKVAVQAKVKNLNAKGACIGPRGQRVSNIMRELGGEKI 259 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ +S D ATFV NAL P+ V V V D + V VP QLSLAIG+ GQN RLA++ Sbjct: 260 DIIDYSEDPATFVGNALAPSKVVNVEVTDLEAQTARVTVPDYQLSLAIGKEGQNARLAAR 319 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 320 LTGWKIDI 327 >gi|315225958|ref|ZP_07867746.1| transcription termination factor NusA [Parascardovia denticolens DSM 10105] gi|315120090|gb|EFT83222.1| transcription termination factor NusA [Parascardovia denticolens DSM 10105] Length = 385 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 195/345 (56%), Gaps = 15/345 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ ID + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 24 LAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIPQE---- 79 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A D P +G D P DFGR A A+QVI R+A D+ + F Sbjct: 80 ------PTAEDPHPRPALGEEYDDT--PEDFGRQAAYIARQVITALFRKAADDKIFGAFA 131 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ V R Sbjct: 132 GQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVVSVNRGL 191 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ ++P GA Sbjct: 192 KGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQGVNPKGA 251 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G RV+AV+ L DEKIDIV WS D A FV AL PA KV V+ E ++ Sbjct: 252 LIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNKTTLALI 311 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +Q+SLAIG+ GQN RLA++LTGW I I + E+ + K E Sbjct: 312 HDDQMSLAIGKEGQNARLAAKLTGWKIAIDSYEKSKAEQAKKAQE 356 >gi|254431817|ref|ZP_05045520.1| transcription termination factor NusA [Cyanobium sp. PCC 7001] gi|197626270|gb|EDY38829.1| transcription termination factor NusA [Cyanobium sp. PCC 7001] Length = 476 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 132/320 (41%), Positives = 188/320 (58%), Gaps = 27/320 (8%) Query: 43 YGTMSDIRVEINPETGDISLFRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVS 98 Y + D++++++ E +R+L +VEEVE+ QI+L + IG VV Sbjct: 59 YFSNFDVQLDLDEEG-----YRVLASKIIVEEVESEDHQIALAEVQQVADDAQIGDTVVL 113 Query: 99 DPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 D P D FGR+A + KQV+ QK+R+ +R EF D ++S V R E +VI+ Sbjct: 114 DVTPEKDDFGRMAAATTKQVLAQKLRDQQRRMIQEEFADLEDPVLSARVVRFERQSVIMA 173 Query: 158 LGNSDG-------VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMV 209 + + G + RRD+ + +N R +K ++ +V +RGPQ+ +SR + +V Sbjct: 174 VSSGPGRPEVEAELPRRDQ-LPNDNYRANTTLKVFLKEVSEVPRRGPQLFVSRANAGLVV 232 Query: 210 KLFHMEVPEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRV 262 LF EVPEI G V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+ Sbjct: 233 YLFENEVPEIQEGSVRIVAVAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRI 292 Query: 263 QAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAI 321 Q VV ELR EKID++ WSPD ++ N+L PA V V L D D V+VP +QLSLAI Sbjct: 293 QQVVNELRGEKIDVIRWSPDPGQYIANSLSPARVEAVRLVDPDGHHAHVLVPPDQLSLAI 352 Query: 322 GRRGQNVRLASQLTGWTIDI 341 GR GQNVRLA++LTGW IDI Sbjct: 353 GREGQNVRLAARLTGWKIDI 372 >gi|50365108|ref|YP_053533.1| transcription elongation factor NusA [Mesoplasma florum L1] gi|50363664|gb|AAT75649.1| transcription terminator [Mesoplasma florum L1] Length = 471 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ ++ EKSI ++V + + + QKA + T + ++ EIN +TG I+LF+ Sbjct: 3 NGAQILEALASLESEKSISKEVAIEGIKEGFQKAYERFFDTEAVVKTEINEQTGSINLFQ 62 Query: 65 LLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQ 120 L VV +E+E+ +I L+ A + +G V P+ +F RVAV +Q+ Q Sbjct: 63 ELMVVATDDEIEDDWLEIVLEDALKINKEAKVGDKVYKPIDFDEEFSRVAVGQVRQIFQQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRP 178 K+R ER Y +F GEI+ G + + + + I+D+ + +TI+RE Sbjct: 123 KIRATERAMIYEKFIQLEGEIVRGKIVGMNDQGTSYILDIDGVHTSLWNQKTINREEFVV 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 + V + +V RE + Q+++SR P+F+ KL EV E+ G+V+V +VSR+PG RAK Sbjct: 183 NELVDVLLEEVARENKYSQLVVSRVAPKFLAKLVEKEVSEVAQGLVEVMSVSREPGKRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D ++P+GA VG++GSR+ + ELR EKID+V W + F+INA+ P V Sbjct: 243 IAVLSHDEDVEPIGAIVGVKGSRINNISKELRGEKIDVVKWDDEIIPFIINAMAPVKVIS 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V +E G +++VP +QLSLAIG+ G +L + L I+I + E Sbjct: 303 V--NEVEGEFDIVVPNQQLSLAIGKGGMAAKLVANLLKRRINIYSLE 347 >gi|227497551|ref|ZP_03927779.1| transcription termination factor NusA [Actinomyces urogenitalis DSM 15434] gi|226833005|gb|EEH65388.1| transcription termination factor NusA [Actinomyces urogenitalis DSM 15434] Length = 348 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 131/337 (38%), Positives = 194/337 (57%), Gaps = 28/337 (8%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A E ID + +L + D+I A + G + VEI+ +G +++ L V+E + Sbjct: 10 GAAQELGIDLEDLLPAIEDAILGAYTKVPGAIRGAHVEIDRRSGHMAV--LAPEVDEEDQ 67 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL-E 133 T + P DFGR+A +A+ VI+Q++++ RD + L Sbjct: 68 PTGEFFDDT-------------------PDDFGRIAQATARSVIVQRIQD-RRDFEVLGA 107 Query: 134 FKDKVGEIISGTVKRVEYGNVI-VDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 FKDK GE+ISGTV++ ++ V L +G++ E + E R GDR+++Y+ +V R Sbjct: 108 FKDKAGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHGDRIRAYVTEVSR 167 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +G Q++LSRTHP + KLF EVPE+ +G V++ AV+R+ G R K+AV S + Sbjct: 168 GPKGAQIILSRTHPGLVRKLFEREVPELVSGDVEIMAVAREAGHRTKMAVRSRQRGLGAK 227 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDVGRIE 309 GAC+G G RV+AV+ EL EKIDIV +S + A F+ NAL PA V+ V + ED + Sbjct: 228 GACIGPMGQRVRAVMAELGGEKIDIVDYSDEPARFIANALSPARVSSVHIQSMEDQ-TAK 286 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 287 AVVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAE 323 >gi|254412331|ref|ZP_05026105.1| transcription termination factor NusA [Microcoleus chthonoplastes PCC 7420] gi|196180641|gb|EDX75631.1| transcription termination factor NusA [Microcoleus chthonoplastes PCC 7420] Length = 459 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 179/299 (59%), Gaps = 20/299 (6%) Query: 63 FRLL---EVVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV N ISLK ++ +G VV D P DFGR+A KQV Sbjct: 72 FRILCTKTIVEEVGNTDHHISLKEVQEVASEAQLGDSVVLDVTPDQRDFGRMAAIQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF++ G ++ V R E +VI+ + + G + + E + Sbjct: 132 LSQKLRDQQRKLIQEEFEELEGTVLQARVLRFERQSVIMAISSGFGQPEVEAELPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 + R G K ++ VR RGPQ+++SR +V LF EVPEI + +V++ AV+ Sbjct: 192 PNDTYRIGSTFKVFLKKVREGPHRGPQLVVSRASAGLVVYLFANEVPEIEDEVVRIVAVA 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 252 REANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V+L GR ++V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVEEVLLVNPEGRQAHILVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|23466164|ref|NP_696767.1| transcription elongation factor NusA [Bifidobacterium longum NCC2705] gi|317482183|ref|ZP_07941206.1| transcription termination factor NusA [Bifidobacterium sp. 12_1_47BFAA] gi|23326902|gb|AAN25403.1| N utilization substance homolog [Bifidobacterium longum NCC2705] gi|316916417|gb|EFV37816.1| transcription termination factor NusA [Bifidobacterium sp. 12_1_47BFAA] Length = 355 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 197/334 (58%), Gaps = 17/334 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPGTLDDALAEALRLAYLKTPHAARHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + K+ + D + P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPYPVP-KLGEEYDDT------------PRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|319441434|ref|ZP_07990590.1| transcription elongation factor NusA [Corynebacterium variabile DSM 44702] Length = 344 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 113/253 (44%), Positives = 154/253 (60%), Gaps = 9/253 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDL 158 P DFGR A ++ + I +V A + Y ++ G ++SG V R E G +V L Sbjct: 76 PTDFGRDAARAVRDAIRGQVNAARAETSYGKYSALEGTVVSGVVSRDARANERGLTVVHL 135 Query: 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G DG+I E I E L GDRVK Y+ V R QRG Q+LLSRTHP+ + LF + Sbjct: 136 GTEADGHDGMILTAEHIPGEKLEHGDRVKCYVTAVHRGQRGIQILLSRTHPELVRGLFAL 195 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPE+ + V++ ++R+ G R+K+AV S+ + ++ GAC+G RG RV +++ L EKI Sbjct: 196 EVPEVADEAVEIAGIAREAGHRSKVAVRSTVNGLNAKGACIGPRGQRVTSIMDALGGEKI 255 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DIV +S D A +V NAL PA V +V V D D+ +VP QLSLAIGR GQN RLA++ Sbjct: 256 DIVDYSEDPAVYVGNALAPAKVVRVDVTDHDMQVARAVVPDHQLSLAIGREGQNARLAAR 315 Query: 334 LTGWTIDIITEEE 346 LTGW IDI E + Sbjct: 316 LTGWKIDIRPESD 328 >gi|302335788|ref|YP_003800995.1| transcription termination factor NusA [Olsenella uli DSM 7084] gi|301319628|gb|ADK68115.1| transcription termination factor NusA [Olsenella uli DSM 7084] Length = 414 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 204/361 (56%), Gaps = 42/361 (11%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL- 66 E+++ A+ EK ID ++ + S+ K+ + RV I+ TG + +++L+ Sbjct: 4 EMMEALMALCQEKHIDELYLIDRLEQSLAKSYAEILHLDFGARVTIDRATGRVYVYKLVP 63 Query: 67 --EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +E + D +D+ P D R+A Q AK I + VR Sbjct: 64 EGDINDETGEF----------DNFEEVDVT--------PKDASRIAAQHAKSEIAEIVRN 105 Query: 125 AERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDE--TISRENLRP-- 178 + R + + EF +VG+II+GTV + ++ + + G + D+ N RP Sbjct: 106 SARQQIFEEFSQRVGDIITGTVLQTTPDFAFIKIREGVEAELPYFDQRRYPDERNERPVG 165 Query: 179 -----GDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 R+++ I DVR E++ P +++SRTHP + +LF +EVPE+Y G+ Sbjct: 166 ERYIHNQRIRAIIVDVRDPNSNQPPIRGERQRPSIVVSRTHPDLIRRLFELEVPEVYEGV 225 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V+V++V+R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V+WS D Sbjct: 226 VEVRSVAREAGVRSKVAVSSLDDRLDPVGACVGPKGSRVRTVVSELRGERVDVVLWSDDP 285 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + V NAL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI Sbjct: 286 SRCVANALSPARVSRVIVDPENNYATVIVPDDQLSLAIGKEGQNARLAARLTGMHIDIKN 345 Query: 344 E 344 E Sbjct: 346 E 346 >gi|311739681|ref|ZP_07713516.1| transcription termination factor NusA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305497|gb|EFQ81565.1| transcription termination factor NusA [Corynebacterium pseudogenitalium ATCC 33035] Length = 338 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 107/248 (43%), Positives = 157/248 (63%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGRV Q+ ++ I++K+REAE +R + + + G ++SG V+R N V+V L Sbjct: 84 PENFGRVGAQAVREAILRKLREAEAERTFDSYSELTGRVVSGIVQRDARANARGIVVVQL 143 Query: 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G+ DG++ E I E L GDR+K+Y+ V R Q+ LSRTHP+ + LF + Sbjct: 144 GSELESQDGILLPAEQIPGEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFEL 203 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPE+ +G V++ A++R+ G R+K+AV ++ GAC+G RG RV ++ +L EKI Sbjct: 204 EVPEVADGSVEMIAIAREAGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKI 263 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ +S D +V NAL P+ V KV V+D + V+VP QLSLAIG+ GQN RLA++ Sbjct: 264 DIIDFSEDPTVYVGNALAPSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAAR 323 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 324 LTGWKIDI 331 >gi|332203719|gb|EGJ17786.1| transcription termination factor NusA [Streptococcus pneumoniae GA47368] Length = 302 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 103/259 (39%), Positives = 159/259 (61%), Gaps = 15/259 (5%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162 P +FGRVA QSAKQ I++K+R+ R Y +K+ EI+SGTV+R + + V+LG+ + Sbjct: 23 PAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIE 82 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 + + + I E DR++ Y+Y V RG V +SR+HP+ + +L E+PE+Y+G Sbjct: 83 AQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDG 142 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR------------ 270 V++ +V+R+ G R K+AV S + ++D +G VG G+ ++ + ++ Sbjct: 143 TVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMV 202 Query: 271 --DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQN 327 +E ID++ W D A F+ NA+ PA V +V+ DE D R V+VP +LSLAIGRRGQN Sbjct: 203 PIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQN 262 Query: 328 VRLASQLTGWTIDIITEEE 346 VRLA+ LTG+ IDI + E Sbjct: 263 VRLAAHLTGYRIDIKSASE 281 >gi|325138660|gb|EGC61216.1| Transcription elongation protein nusA [Neisseria meningitidis ES14902] Length = 277 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 119/277 (42%), Positives = 180/277 (64%), Gaps = 15/277 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVVEEVENYT---CQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V + E+YT + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q+ Sbjct: 64 LIVAD-EDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPG 179 +R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R G Sbjct: 123 IRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSG 182 Query: 180 DRVKSYIYDVRREQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 DR+++ +R E+ G QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG Sbjct: 183 DRIRALF--LRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQ 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 RAK+AV ++D IDP G C+G+RGSRV AV EL E Sbjct: 241 RAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGE 277 >gi|224532423|ref|ZP_03673051.1| transcription elongation protein NusA [Borrelia burgdorferi WI91-23] gi|224512646|gb|EEF83019.1| transcription elongation protein NusA [Borrelia burgdorferi WI91-23] Length = 336 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 207/328 (63%), Gaps = 5/328 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLK-VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K ++++ +I G + P F R+++Q AKQ ++ E + EF Sbjct: 72 LLEILEKDISKE---NIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++L W ID+ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDV 336 >gi|227549050|ref|ZP_03979099.1| transcription elongation factor NusA [Corynebacterium lipophiloflavum DSM 44291] gi|227078904|gb|EEI16867.1| transcription elongation factor NusA [Corynebacterium lipophiloflavum DSM 44291] Length = 341 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 196/346 (56%), Gaps = 37/346 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 L A++ E ID D +L +A ++ R RVEI+ +TGD+S+ Sbjct: 5 LNALKAISTEHGIDVDDLLETIAGALLSVYRDYREAPPAEGHRARVEIDADTGDVSVL-- 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVRE 124 V EV+ D G VVS+ P++F R+ + I ++VRE Sbjct: 63 ---VSEVD------------------DDGAVVSEYDDTPVNFSRIGAPTVLDAIKKRVRE 101 Query: 125 AERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISRENL 176 AE R + E+ + G+++SG V+R G ++V+LG DG++ E I E L Sbjct: 102 AEAGRVFSEYSEFEGQVVSGVVQRDANAEARGLIVVELGTEADPQDGILLPAEQIPGEKL 161 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + GDR+K+++ V + +R QV LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R Sbjct: 162 KHGDRIKAFVVGVNKGERKVQVNLSRTHPELVRGLFALEVPEVADGTVEIVAIAREAGHR 221 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV + ++ GAC+G RG+RV ++ +L EKIDI+ +S D A +V N+L P+ V Sbjct: 222 SKVAVQAKVKGVNAKGACIGPRGARVTNIMQQLGGEKIDIIEYSADPAKYVGNSLAPSKV 281 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +V VLD + V VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 282 VRVEVLDLEGQAARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDI 327 >gi|227833356|ref|YP_002835063.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC 700975] gi|262184342|ref|ZP_06043763.1| transcription elongation factor NusA [Corynebacterium aurimucosum ATCC 700975] gi|227454372|gb|ACP33125.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC 700975] Length = 338 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/248 (42%), Positives = 157/248 (63%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGR+ Q+ + I++K+RE E +R Y + + G ++SG V+R + N V+V L Sbjct: 84 PDNFGRIGAQAVRDAILRKLRENEAERTYDSYSELTGTVVSGVVQRDIHANNRGVVVVQL 143 Query: 159 G----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G + D + E + E L GDRVK+Y+ V R Q+ LSRTHP+ + LF + Sbjct: 144 GTEHDSQDAFLLPAEQLPGEKLEHGDRVKAYVVGVNRNGAKVQITLSRTHPELVRGLFEL 203 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPE+ +G V++ A++R+ G R+K++V ++ GAC+G +GSRV V+ EL EKI Sbjct: 204 EVPEVADGAVEIIAIAREAGHRSKISVRGHAKGLNAKGACIGPKGSRVSNVMRELGGEKI 263 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ ++ D A +V NAL P+ V +V +LDE+ +V VP QLSLAIG+ GQN RLA++ Sbjct: 264 DIIDFNEDPAVYVGNALAPSKVVRVEILDEEAQVAKVTVPDYQLSLAIGKEGQNARLAAR 323 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 324 LTGWKIDI 331 >gi|323356820|ref|YP_004223216.1| transcription elongation factor [Microbacterium testaceum StLB037] gi|323273191|dbj|BAJ73336.1| transcription elongation factor [Microbacterium testaceum StLB037] Length = 329 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/249 (43%), Positives = 160/249 (64%), Gaps = 5/249 (2%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNS 161 P DFGR+A +AKQVI Q++R+ D EF+ K G+I++G V++ ++ VDLG Sbjct: 80 PDDFGRIAAFAAKQVISQRLRDIADDAVLGEFRGKEGDIVAGVVQQGPNPRMVHVDLGTV 139 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ +E + E G R++ Y+ V + +GPQ+ +SRTHP + KLF +EVPEI Sbjct: 140 EAILPPEEQVPGETYAHGSRLRVYVTSVSKGNKGPQITVSRTHPGLVRKLFALEVPEIAA 199 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G+V++ +++R+ G R+K+AV ++D +++ GAC+G G RV+AV EL EKIDI+ + Sbjct: 200 GLVEIVSLAREAGHRSKIAVKANDPTVNAKGACIGELGRRVRAVTEELAGEKIDIIDYDA 259 Query: 282 DSATFVINALRPAIVT-KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + FV NAL PA VT VLD + +VP QLSLAIG+ GQN RLA++LTG ID Sbjct: 260 ELPRFVANALSPAKVTSSFVLDASTKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKID 319 Query: 341 IITEEEDSI 349 I + DSI Sbjct: 320 I---QPDSI 325 >gi|220907502|ref|YP_002482813.1| transcription elongation factor NusA [Cyanothece sp. PCC 7425] gi|219864113|gb|ACL44452.1| NusA antitermination factor [Cyanothece sp. PCC 7425] Length = 413 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 202/362 (55%), Gaps = 29/362 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM------------SDIRVEINPE 56 L ++ +A++ E+++ + V + +++ K T+ + VEI+ E Sbjct: 9 LREMINAISRERNLPKYAVQGALQEALMKGYERYRRTLRLEGGHFDEDYFQNFDVEIDVE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSA 114 + +VE+V+N QISL ++ +G V + P +FGR+A A Sbjct: 69 EEGFRVLATKTIVEQVDNPDHQISLSEVQEVAAEAQLGDTVILDVTPEQQEFGRMAAIQA 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + G + + Sbjct: 129 KQVLAQKLRDQQRKLVQEEFQDLESTVLQARVLRFERRSVIMAVSSGFGQPEVEAELPKK 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVLEGPHRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V +++ + + ++V +QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVEEVRLMNPEERQAHILVTDDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DI 341 DI Sbjct: 369 DI 370 >gi|300866111|ref|ZP_07110839.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506] gi|300335907|emb|CBN55997.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506] Length = 427 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 196/360 (54%), Gaps = 27/360 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----------MSDIRVEINPETG 58 L + D ++ E+++ + V + + +++ K T + VE++ E Sbjct: 9 LKDMVDVISKERNLPKHAVQAALREALVKGYERYRRTQRLDHFSEEYFDNFEVELDIEEE 68 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQ 116 + +VEEV N QI+L ++ +G V + P DFGR+A KQ Sbjct: 69 GFRVLATKSIVEEVSNPDHQIALLEVQEVATEAQLGDTVILDVTPDQNDFGRMAAIQTKQ 128 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDET 170 V+ QK+R+ +R EFKD ++ V R E + I+ + + G + + E Sbjct: 129 VLAQKLRDQQRKMIQEEFKDLEETVLQARVLRFERQSAILAVSSGFGQPEVEAELPKREQ 188 Query: 171 ISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + +N R K Y+ V RGPQ+++SR +V LF EVPEI +G+V++ AV Sbjct: 189 LPNDNYRANATFKVYLKKVGEGATRGPQLVVSRADAGLVVYLFANEVPEIEDGVVRIVAV 248 Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 249 AREANPPSRHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 308 Query: 283 SATFVINALRPAIVTKVVLDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V L G R ++V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 309 PATYIANALSPARVDEVRLVAPEGRRAHILVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 368 >gi|237785727|ref|YP_002906432.1| transcription elongation factor NusA [Corynebacterium kroppenstedtii DSM 44385] gi|237758639|gb|ACR17889.1| N utilization substance protein A [Corynebacterium kroppenstedtii DSM 44385] Length = 328 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 200/342 (58%), Gaps = 33/342 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ E+ + + + + +A ++ +A G S+ RV+++P+ G +++ Sbjct: 10 AIERERGVSVEDMTATIAKALLEAWEKSSGGDSEARVDVDPDDGHVAV------------ 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +RD D G V+++ P DFGR + ++ ++ +++EAE D+ Y E Sbjct: 58 --------IVTERD---DEGNVIAEVDETPSDFGRSFAGTVREAMVARLQEAEADQTYEE 106 Query: 134 FKDKVGEIISGTVKRVEY----GNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSY 185 + ++++G V+ + G VI LG +DG + E I E G R+K Y Sbjct: 107 YASLTSKVVTGIVEADSFARAKGIVIARLGTEAHGNDGTLLPAEQIPGEKYPHGKRLKFY 166 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V R RG Q+++SRTHP+F+ +LF +EVPE+ +G V+V +++R+ G R+K+AV S+ Sbjct: 167 VVNVNRGPRGVQIMISRTHPEFVHRLFELEVPEVADGSVEVVSIAREAGHRSKVAVRSTI 226 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ G+C+G RG RV+A++ EL EKIDI+ + D ATFV N+L P+ V KV V+D + Sbjct: 227 DGVNAKGSCIGPRGQRVRAIMDELGGEKIDIIDFDEDPATFVGNSLAPSKVLKVEVVDPE 286 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 287 EQVARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDTE 328 >gi|213022790|ref|ZP_03337237.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 177 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 91/170 (53%), Positives = 128/170 (75%) Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 + RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDP Sbjct: 4 KTYRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDP 63 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ P Sbjct: 64 GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAP 123 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A V +V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T Sbjct: 124 ADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMT 173 >gi|259507495|ref|ZP_05750395.1| N utilization substance protein A [Corynebacterium efficiens YS-314] gi|259164880|gb|EEW49434.1| N utilization substance protein A [Corynebacterium efficiens YS-314] Length = 332 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 109/248 (43%), Positives = 165/248 (66%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDL 158 P +FGRV+ ++ + I++++REAE +R + + + G ++SG V + E G V+V L Sbjct: 80 PSNFGRVSARAVRDAIVRRLREAEAERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQL 139 Query: 159 G----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G + DG++ E I E L+ GDRVKSY+ V + G Q+ LSRTHP+ + +LF + Sbjct: 140 GTETDSQDGILLPAEQIPGEKLKHGDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFEL 199 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 E+PE+ +G V++ A+SR+ G R+K+AV ++ +++ GAC+G RG RV ++ EL EKI Sbjct: 200 EIPEVADGSVEIVAISREAGHRSKVAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKI 259 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ +S D ATFV NAL P+ V V ++D + +V+VP QLSLAIG+ GQN RLA++ Sbjct: 260 DIIDYSDDPATFVGNALAPSKVVSVEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAAR 319 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 320 LTGWKIDI 327 >gi|33863793|ref|NP_895353.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9313] gi|33635376|emb|CAE21701.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9313] Length = 482 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 176/297 (59%), Gaps = 19/297 (6%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 +VEEVE+ QI+L+ IG VV D P DFGR+A + KQV+ QK+R+ Sbjct: 82 IVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTKQVLAQKLRDQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRP 178 +R EF D +++ V R E +VI+ + + G + RRD+ + +N R Sbjct: 142 QRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRDQ-LPNDNYRA 200 Query: 179 GDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP---- 233 K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ AV+R+ Sbjct: 201 NATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVAVAREANPPS 260 Query: 234 ---GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD ++ N+ Sbjct: 261 RSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSPDPGQYIANS 320 Query: 291 LRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW IDI +E Sbjct: 321 LSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKNSQE 377 >gi|124022125|ref|YP_001016432.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9303] gi|123962411|gb|ABM77167.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9303] Length = 484 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 176/297 (59%), Gaps = 19/297 (6%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 +VEEVE+ QI+L+ IG VV D P DFGR+A + KQV+ QK+R+ Sbjct: 82 IVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTKQVLAQKLRDQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRP 178 +R EF D +++ V R E +VI+ + + G + RRD+ + +N R Sbjct: 142 QRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRDQ-LPNDNYRA 200 Query: 179 GDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP---- 233 K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ AV+R+ Sbjct: 201 NATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVAVAREANPPS 260 Query: 234 ---GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD ++ N+ Sbjct: 261 RSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSPDPGQYIANS 320 Query: 291 LRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW IDI +E Sbjct: 321 LSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKNSQE 377 >gi|158334115|ref|YP_001515287.1| transcription elongation factor NusA [Acaryochloris marina MBIC11017] gi|158304356|gb|ABW25973.1| transcription termination factor NusA [Acaryochloris marina MBIC11017] Length = 452 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/320 (40%), Positives = 189/320 (59%), Gaps = 21/320 (6%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPMD-FGRVAVQSAKQVIIQKVREA 125 +V+EVE+ QI+L R+ P +G VV D P + FGR+A KQV+ QK+R+ Sbjct: 81 IVDEVESTDHQIALTEVREVAPEAQLGDTVVLDVTPEQNEFGRMAAIQTKQVLSQKLRDQ 140 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETISRENLRPG 179 +R EF+D ++ V R E +VI+ + ++ G + + E + +N R Sbjct: 141 QRKLIQEEFQDLEKTVLQARVLRFERRSVIMAVTSAFGQPEVEAELPKREQLPNDNYRAN 200 Query: 180 DRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP----- 233 K ++ V RGPQ+++SR +V LF EVPEI + +V++ AV+R+ Sbjct: 201 ATFKVFLKRVADGPHRGPQLVVSRADAGLVVYLFANEVPEIEDEVVRIVAVAREANPPSR 260 Query: 234 --GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD AT++ NAL Sbjct: 261 QVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPATYIANAL 320 Query: 292 RPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW IDI +D N Sbjct: 321 SPARVDAVRLIDTEERQAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDI----KDIAN 376 Query: 351 RQKDFNERTQFFMQAINVDE 370 ++ + +QA VDE Sbjct: 377 YDQEAEDLQLSELQAQKVDE 396 >gi|148243067|ref|YP_001228224.1| transcription elongation factor NusA [Synechococcus sp. RCC307] gi|147851377|emb|CAK28871.1| Transcription elongation factor NusA [Synechococcus sp. RCC307] Length = 471 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 202/363 (55%), Gaps = 33/363 (9%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL------FR 64 ++ EK + +VV + + +++ K R+LY G D E D+ L +R Sbjct: 16 ISEEKKLPANVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLDLDEEGYR 75 Query: 65 LLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPMD-FGRVAVQSAKQVII 119 +L +VEEVE+ QI L + +G VV D P D FGR+A + KQV+ Sbjct: 76 VLASKIIVEEVESEDHQIGLADVQQVTDDAQLGDTVVLDVTPEKDDFGRMAAATTKQVLA 135 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETIS 172 QK+RE +R EF D +++ V R E +VI+ + + G + RRD+ + Sbjct: 136 QKLREHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LP 194 Query: 173 RENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ AV+R Sbjct: 195 NDNYRANATFKVFLKEVSEIARRGPQLFISRANAGLVVYLFENEVPEIQEGSVRIVAVAR 254 Query: 232 DP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 + G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 255 EANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSPDPG 314 Query: 285 TFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 ++ N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW IDI Sbjct: 315 QYLANSLSPARVDMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKN 374 Query: 344 EEE 346 EE Sbjct: 375 SEE 377 >gi|25028436|ref|NP_738490.1| transcription elongation factor NusA [Corynebacterium efficiens YS-314] gi|23493721|dbj|BAC18690.1| putative transcriptional termination/antitermination factor [Corynebacterium efficiens YS-314] Length = 359 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/248 (43%), Positives = 165/248 (66%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDL 158 P +FGRV+ ++ + I++++REAE +R + + + G ++SG V + E G V+V L Sbjct: 107 PSNFGRVSARAVRDAIVRRLREAEAERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQL 166 Query: 159 G----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G + DG++ E I E L+ GDRVKSY+ V + G Q+ LSRTHP+ + +LF + Sbjct: 167 GTETDSQDGILLPAEQIPGEKLKHGDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFEL 226 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 E+PE+ +G V++ A+SR+ G R+K+AV ++ +++ GAC+G RG RV ++ EL EKI Sbjct: 227 EIPEVADGSVEIVAISREAGHRSKVAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKI 286 Query: 275 DIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ +S D ATFV NAL P+ V V ++D + +V+VP QLSLAIG+ GQN RLA++ Sbjct: 287 DIIDYSDDPATFVGNALAPSKVVSVEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAAR 346 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 347 LTGWKIDI 354 >gi|78779969|ref|YP_398081.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9312] gi|78713468|gb|ABB50645.1| NusA antitermination factor [Prochlorococcus marinus str. MIT 9312] Length = 468 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 175/298 (58%), Gaps = 21/298 (7%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 +VEEVE+ QISL + IG VV D P DFGR+A + KQV+ QK+R+ Sbjct: 82 IVEEVESEDHQISLAEVKQVAEDAQIGDTVVLDVTPEKEDFGRMAASTTKQVLAQKLRDQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDETISRENLR 177 +R EF D +++ V R E +VI +G S G+ R + + + +N R Sbjct: 142 QRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRDQLPNDNYR 199 Query: 178 PGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP--- 233 K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ AVSR+ Sbjct: 200 ANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVAVSREANPP 259 Query: 234 ----GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS D +++N Sbjct: 260 SRGVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSSDPIQYILN 319 Query: 290 ALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +L PA V +V L + G+ V+VP +QLSLAIGR GQNVRLA++LTGW ID+ E Sbjct: 320 SLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDVKNSHE 377 >gi|170077376|ref|YP_001734014.1| transcription elongation factor NusA [Synechococcus sp. PCC 7002] gi|169885045|gb|ACA98758.1| transcription termination factor NusA [Synechococcus sp. PCC 7002] Length = 420 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 129/299 (43%), Positives = 183/299 (61%), Gaps = 20/299 (6%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEVEN QI+L+ ++ +G V+ D P DFGR+A KQV Sbjct: 73 FRVLATKVIVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQTKQV 132 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 ++QK+R+ +R EF++ GE++ V R E V++ + ++ G + R E + Sbjct: 133 LLQKLRDQQRKLVQEEFQELEGEVLQARVLRFERNFVVMAVTSAFGQPETEAELPRREQL 192 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ V+ RGPQ+++SR +V LF EVPEI IV++ AV+ Sbjct: 193 PNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPEIEEEIVRIVAVA 252 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD Sbjct: 253 REANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 312 Query: 284 ATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V V+L D + + V+VP+ QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 313 ATYIANALSPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWKIDI 371 >gi|87301303|ref|ZP_01084144.1| transcription elongation factor NusA [Synechococcus sp. WH 5701] gi|87284271|gb|EAQ76224.1| transcription elongation factor NusA [Synechococcus sp. WH 5701] Length = 492 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 204/365 (55%), Gaps = 33/365 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + + ++ EK + VV + + +++ K R+LY G D E D++L Sbjct: 9 LQNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALD 68 Query: 63 -----FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPMD-FGRVAVQ 112 +R+L +VEEVE+ QI+L + +G VV D P D FGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVQQVAEDAQVGDTVVLDVTPEKDDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VI 165 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 166 RRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 RRD+ + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V Sbjct: 189 RRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSV 247 Query: 225 QVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 ++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 248 RIVAVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVI 307 Query: 278 VWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 WSPD ++ N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTG Sbjct: 308 RWSPDPGQYLANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTG 367 Query: 337 WTIDI 341 W IDI Sbjct: 368 WKIDI 372 >gi|227504824|ref|ZP_03934873.1| transcription elongation factor NusA [Corynebacterium striatum ATCC 6940] gi|227198674|gb|EEI78722.1| transcription elongation factor NusA [Corynebacterium striatum ATCC 6940] Length = 338 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/316 (37%), Positives = 182/316 (57%), Gaps = 34/316 (10%) Query: 36 QKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG 95 Q AA GT S RV+I+ +TG +++ + + DP + G Sbjct: 40 QSAAGKSEGTKS--RVDIDADTGAVTV--------------------IVTESDP--ETGE 75 Query: 96 VVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR----VE 150 V+S+ P +F RV Q+ ++ II+K+REAE + Y + + G ++SG V+R E Sbjct: 76 VISEYDDTPENFSRVGAQAVREAIIRKLREAEAEVTYESYSELTGRVVSGIVQRDVRANE 135 Query: 151 YGNVIVDLG----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 G V+V LG + D ++ E + E L GDR+K+Y+ V R Q+ LSRTHP+ Sbjct: 136 RGVVVVQLGTELDSQDAILLPAEQLPGEKLEHGDRIKAYVVGVTRNGAQVQITLSRTHPE 195 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266 + LF +E+PE+ +G V++ A++R+ G R+K++V ++ GAC+G RG RV ++ Sbjct: 196 LVRGLFELEIPEVGDGAVELVAIAREAGHRSKVSVIGHAKGLNAKGACIGPRGERVNNIM 255 Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRG 325 EL EKIDI+ ++ D A +V N+L P+ V +V V+D D V VP QLSLAIG+ G Sbjct: 256 RELGGEKIDIIDYNEDPAVYVGNSLAPSKVVRVEVVDPDAQVARVTVPDYQLSLAIGKEG 315 Query: 326 QNVRLASQLTGWTIDI 341 QN RLA++LTGW IDI Sbjct: 316 QNARLAARLTGWKIDI 331 >gi|78189424|ref|YP_379762.1| transcription elongation factor NusA [Chlorobium chlorochromatii CaD3] gi|78171623|gb|ABB28719.1| NusA antitermination factor [Chlorobium chlorochromatii CaD3] Length = 527 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 196/341 (57%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VE+V+ T +ISL+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILRKIVEDVDIPTIEISLEDIRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+G Sbjct: 104 IDDSLEVGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLIVYEECLEKVGEVIAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQR----- 194 V +V VI S V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRMPRMKLYVKRIEREKNKIRMD 223 Query: 195 ------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +KAV+R PG RAK+AV Sbjct: 224 DGTVVEREKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIIIKAVARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + + Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPMTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 VDIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|110597607|ref|ZP_01385892.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM 13031] gi|110340727|gb|EAT59204.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM 13031] Length = 516 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 194/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++V+EV+ + +ISL R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDIESIEISLDEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+DIG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDDSLDIGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V ++ VI S V+ + E + ++N R R+K YI + RE+ Sbjct: 164 EVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYIKRIEREKVKTKLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV Sbjct: 224 DGNVVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + + Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYISRAMQPAKIDPLTVH 343 Query: 303 ED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADPKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|119356207|ref|YP_910851.1| transcription elongation factor NusA [Chlorobium phaeobacteroides DSM 266] gi|119353556|gb|ABL64427.1| NusA antitermination factor [Chlorobium phaeobacteroides DSM 266] Length = 518 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 193/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L +VV EV+ + +IS+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKVVSEVDLESIEISIDEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDDSLELGDYYEEGPIKLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI S V+ R E I ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPRAEMIKKDNPRRNPRMKLYVKRIEREKVKVRLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGGVVERDKPDGGMKVIVSRIDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + + Sbjct: 284 STSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|123966905|ref|YP_001011986.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9515] gi|123201271|gb|ABM72879.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9515] Length = 467 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 177/306 (57%), Gaps = 24/306 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 +R+L +VEEVE+ QISL + IG VV D P DFGR+A + KQV Sbjct: 74 YRILSSKIIVEEVESEDHQISLNEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTKQV 133 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDE 169 + QK+R+ +R EF D +++ V R E +VI +G S G+ R + + Sbjct: 134 LAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIKWSA 311 Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIEYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEE 346 + E Sbjct: 372 VKNSHE 377 >gi|296117673|ref|ZP_06836257.1| transcription termination factor NusA [Corynebacterium ammoniagenes DSM 20306] gi|295969404|gb|EFG82645.1| transcription termination factor NusA [Corynebacterium ammoniagenes DSM 20306] Length = 340 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 107/253 (42%), Positives = 154/253 (60%), Gaps = 14/253 (5%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGRVA + + I +++RE E DR Y + + G ++SG V++ + N V+V L Sbjct: 80 PTNFGRVAAPAVRDAIFKRLREVEADRAYDSYAELQGTVVSGVVQQDSHANSRGIVVVQL 139 Query: 159 GN---------SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209 G DG++ E I E L G RV++Y+ V++E QVLLSRTHP+ + Sbjct: 140 GTEIDIKEGKTQDGILLPAEQIPGERLTHGTRVRAYVVGVQKEGARVQVLLSRTHPELVR 199 Query: 210 KLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 LF +EVPE+ +G V++ A++R+ G R+K+AV ++ GAC+G RG RV V+ L Sbjct: 200 GLFELEVPEVLDGAVEIVAIAREAGHRSKVAVTGQVKGLNAKGACIGPRGQRVTNVMQSL 259 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 EKIDI+ ++ D +V NAL P+ V +V VLD + V VP QLSLAIG+ GQN Sbjct: 260 GGEKIDIIDFNEDPGVYVGNALAPSKVVRVEVLDPEAQLARVTVPDYQLSLAIGKEGQNA 319 Query: 329 RLASQLTGWTIDI 341 RLA++LTGW IDI Sbjct: 320 RLAARLTGWKIDI 332 >gi|33865134|ref|NP_896693.1| transcription elongation factor NusA [Synechococcus sp. WH 8102] gi|33638818|emb|CAE07115.1| N utilization substance protein A [Synechococcus sp. WH 8102] Length = 475 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 208/365 (56%), Gaps = 33/365 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + D ++ EK + VV + + +++ K R++Y G D E D+ L Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTMYLGISEDPFDEEYFSNFDVGLD 68 Query: 63 -----FRLLE---VVEEVENYTCQISLK-VARDRDPSIDIGGVVSDPLPPM-DFGRVAVQ 112 +R+L +VEEVE+ QI+L+ V + D + + VV D P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEEVESEDHQIALQEVMQVADDAQEGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VI 165 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 166 RRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 RRD+ + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V Sbjct: 189 RRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSV 247 Query: 225 QVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 ++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 248 RIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVI 307 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 WS D ++ N+L PA V V L + VG+ V+VP +QLSLAIGR GQNVRLA++LTG Sbjct: 308 RWSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTG 367 Query: 337 WTIDI 341 W +DI Sbjct: 368 WKLDI 372 >gi|23336297|ref|ZP_00121520.1| COG0195: Transcription elongation factor [Bifidobacterium longum DJO10A] Length = 310 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 102/246 (41%), Positives = 160/246 (65%), Gaps = 3/246 (1%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR--VEYGNVIVDLGN 160 P DFGR+A +A+QVI Q R AE ++ + F + G++I+G +++ + NV V +G+ Sbjct: 41 PRDFGRLAAATARQVITQLFRRAEDEKVFGSFSGQKGKLITGIIQQDASDPSNVHVAMGD 100 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + ++ R E + E R G+R++ Y+ +V R +GP++++SR+HP+ + KLF EVPE+ Sbjct: 101 VEAILPRREQVPGERYRHGERIRVYVVNVARGIKGPEIVVSRSHPELVRKLFEREVPELV 160 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 +G V + A++R+ G+R K+AV ++ ++P GA +G G+RV+AV+ L EKIDIV +S Sbjct: 161 SGAVSIMAIAREAGARTKIAVKANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDYS 220 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV AL PA+ T V V+ E + +QLSLAIG+ GQN RLA++LTGW I Sbjct: 221 DDPAKFVAAALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKI 280 Query: 340 DIITEE 345 I + E Sbjct: 281 GIESAE 286 >gi|303233400|ref|ZP_07320069.1| transcription termination factor NusA [Atopobium vaginae PB189-T1-4] gi|302480529|gb|EFL43620.1| transcription termination factor NusA [Atopobium vaginae PB189-T1-4] Length = 413 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 108/265 (40%), Positives = 161/265 (60%), Gaps = 25/265 (9%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162 P + R+ VQ KQ + + +R ++R + Y EF +++G++I+GTV + I+ + D Sbjct: 84 PKEASRLVVQHVKQELAEIIRNSQRQQIYEEFSNRIGDLITGTVLQTTSDFAIIKI--RD 141 Query: 163 GVI-------------RRDETISRENLRPGDRVKSYIYDVRR----------EQRGPQVL 199 GV R+E E R+ + I DVR E++ P ++ Sbjct: 142 GVEAELPYFDPHRYPEERNERPPHEYYVHNQRLHALIVDVRNPSSTSAPVRGERQRPSIV 201 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 +SR + + +LF +EVPEIY+G+V +++V+RD G R+K+AV S D +DPVGACVG +G Sbjct: 202 VSRARRELISRLFELEVPEIYDGVVTIRSVARDAGVRSKIAVSSQDPHLDPVGACVGPKG 261 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 +RV+ VV+ELR E++D+V W D A V +AL PA VT+V++DE+ VIVP +QLSL Sbjct: 262 ARVRTVVSELRGERVDVVQWYDDPAQNVASALSPATVTRVLVDEEHNHATVIVPDDQLSL 321 Query: 320 AIGRRGQNVRLASQLTGWTIDIITE 344 AIG+ GQN RLA+ LTG IDI E Sbjct: 322 AIGKGGQNARLAASLTGMHIDIKNE 346 >gi|123969228|ref|YP_001010086.1| transcription elongation factor NusA [Prochlorococcus marinus str. AS9601] gi|123199338|gb|ABM70979.1| N utilization substance protein A [Prochlorococcus marinus str. AS9601] Length = 467 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/306 (40%), Positives = 179/306 (58%), Gaps = 24/306 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 +R+L +VEEVE+ QISL + IG VV D P DFGR+A + KQV Sbjct: 74 YRILSSKIIVEEVESEDHQISLVEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTKQV 133 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDE 169 + QK+R+ +R EF D +++ V R E +VI +G S G+ R + + Sbjct: 134 LAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEEEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + +++N+L PA V +V L + G+ V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 NPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEE 346 + E Sbjct: 372 VKNSHE 377 >gi|157414094|ref|YP_001484960.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9215] gi|157388669|gb|ABV51374.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9215] Length = 467 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 177/306 (57%), Gaps = 24/306 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 +R+L +VEEVE+ QISL + IG VV D P DFGR+A + KQV Sbjct: 74 YRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTKQV 133 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDE 169 + QK+R+ +R EF D +++ V R E +VI +G S G+ R + + Sbjct: 134 LAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEE 346 + E Sbjct: 372 VKNSHE 377 >gi|126697021|ref|YP_001091907.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9301] gi|126544064|gb|ABO18306.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9301] Length = 467 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/306 (40%), Positives = 179/306 (58%), Gaps = 24/306 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 +R+L +VEEVE+ QISL + IG VV D P DFGR+A + KQV Sbjct: 74 YRILSSKIIVEEVESEDHQISLIEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTKQV 133 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDE 169 + QK+R+ +R EF D +++ V R E +VI +G S G+ R + + Sbjct: 134 LAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S ++ +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVENEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEE 346 + E Sbjct: 372 VKNSHE 377 >gi|254526931|ref|ZP_05138983.1| transcription termination factor NusA [Prochlorococcus marinus str. MIT 9202] gi|221538355|gb|EEE40808.1| transcription termination factor NusA [Prochlorococcus marinus str. MIT 9202] Length = 467 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 177/306 (57%), Gaps = 24/306 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 +R+L +VEEVE+ QISL + IG VV D P DFGR+A + KQV Sbjct: 74 YRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTKQV 133 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDE 169 + QK+R+ +R EF D +++ V R E +VI +G S G+ R + + Sbjct: 134 LAQKLRDHQRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEE 346 + E Sbjct: 372 VKNSHE 377 >gi|78187634|ref|YP_375677.1| transcription elongation factor NusA [Chlorobium luteolum DSM 273] gi|78167536|gb|ABB24634.1| NusA antitermination factor [Chlorobium luteolum DSM 273] Length = 553 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 194/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIRR 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+ Sbjct: 104 IDESLEVGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVIAA 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI S V+ + E + ++N R R+K Y+ ++ RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVRLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ +S + ++ AL+PA + + + Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|194333210|ref|YP_002015070.1| transcription elongation factor NusA [Prosthecochloris aestuarii DSM 271] gi|194311028|gb|ACF45423.1| NusA antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 517 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 194/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++V+E++ + +IS+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVDEIDIPSIEISIDEVRQ 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+I+G Sbjct: 104 IDDSLEVGDYYEEGPINLEEYLTRKSIQIIKQSVQKKVRDLERQVVYEECLEKVGEVIAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V ++ VI S V+ + E I ++N R R+K Y+ + RE+ Sbjct: 164 EVYQIRPHEVIFSYNTSKDHRVELVLPKSEMIKKDNPRRTPRMKLYVKRIERERVKVKQD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SRT +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGSIVEKEKPDGGMKVIVSRTDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + + Sbjct: 284 STSSRIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIFIARALQPAKIDPMTVH 343 Query: 303 EDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADMKTRMARVMLKPDQIKYAIGKNGNNIHLAERLTGYEIDV 384 >gi|229818209|ref|ZP_04448491.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM 20098] gi|229784460|gb|EEP20574.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM 20098] Length = 346 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 114/348 (32%), Positives = 198/348 (56%), Gaps = 19/348 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ ID + + ++++++ A R+E++ G +++ +E+ Sbjct: 11 LAAEQGIDAETLDDALSEALRLAYLKTPHAAKHARIELDDRAGTFTVW----AADEIPGT 66 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 + + P+ +G D P DFGR+A +A+QVI R AE ++ + F Sbjct: 67 PTE------ENPHPAPTLGEEYDDT--PKDFGRLAAATARQVITLLFRHAEDEKIFGAFS 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + NV + +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 GQKGKLITGIVQQDVKDSSNVHIAMGDVEALLPRREQVPGERYRHGERLRVYVVNVGRGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA Sbjct: 179 KGPEIIVSRSHPELVRCLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTEGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G+RV+AV+ L EKIDIV +S D A FV +AL PA+ T V ++ E + Sbjct: 239 LIGPGGARVRAVMENLGQEKIDIVDYSDDPAKFVASALSPAVATGVQIISEKNKTAIAFI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +QLSLAIG+ GQN RLA++LTGW I I E + K E+T+ Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGI----ESAETHAKKMAEQTE 342 >gi|318042328|ref|ZP_07974284.1| transcription elongation factor NusA [Synechococcus sp. CB0101] Length = 477 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 206/369 (55%), Gaps = 41/369 (11%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + + ++ EK + VV S + +++ K R+LY G D E D++L Sbjct: 9 LSNLIEDISEEKKLPAQVVESALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALD 68 Query: 63 -----FRLLE---VVEEVENYTCQISL----KVARDRDPSIDIG-GVVSDPLPPM-DFGR 108 +R+L +VEEVE+ QI+L +VA D IG VV D P DFGR Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVMQVAED----AQIGDTVVLDVTPEKEDFGR 124 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG----- 163 +A + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G Sbjct: 125 MAAATTKQVLAQKLRDHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVE 184 Query: 164 --VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + RRD+ + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI Sbjct: 185 AELPRRDQ-LPNDNYRANATFKVFLKEVSEIPRRGPQLFVSRANAGLVVYLFENEVPEIQ 243 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 G V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 244 EGSVRIVAVAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEK 303 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WS D ++ N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA+ Sbjct: 304 IDVIRWSQDPGQYIANSLSPARVEAVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAA 363 Query: 333 QLTGWTIDI 341 +LTGW IDI Sbjct: 364 RLTGWKIDI 372 >gi|33862048|ref|NP_893609.1| transcription elongation factor NusA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634266|emb|CAE19951.1| N utilization substance protein A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 467 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 24/301 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 +R+L +VE VE+ QISL+ + IG VV D P DFGR+A + KQV Sbjct: 74 YRILSSKIIVENVESEDHQISLQEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTKQV 133 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDE 169 + QK+R+ +R EF D +++ V R E +VI +G S G+ R + + Sbjct: 134 LAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVI--MGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 I 341 + Sbjct: 372 V 372 >gi|193213433|ref|YP_001999386.1| transcription elongation factor NusA [Chlorobaculum parvum NCIB 8327] gi|193086910|gb|ACF12186.1| NusA antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 521 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 192/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ + IQK R Y + + INPE GD ++ L ++VEEV+ T +I L R Sbjct: 44 IADLLKEIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDLPTIEIGLDEVRQ 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ DF R ++Q KQ + +KVR+ ER Y + +KVGE+++G Sbjct: 104 IDDSLELGDYYEEGPIKLDDFLTRKSIQIIKQSVQKKVRDLERMAVYEDCLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI S V+ + E + ++N R +K Y+ + RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPHMKLYVKRIERERVKVRND 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + + Sbjct: 284 STSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|39938634|ref|NP_950400.1| transcription elongation factor NusA [Onion yellows phytoplasma OY-M] gi|39721743|dbj|BAD04233.1| transcription terminator [Onion yellows phytoplasma OY-M] Length = 357 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/352 (30%), Positives = 198/352 (56%), Gaps = 14/352 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N +LL D +A E+ +D+D V+ A + + + S ++E+ + +I Sbjct: 1 MISKNFFKLL---DKIAQERDLDKDQVIDAFAKGLISGCKKNHKVKS-CKIELKEDKSEI 56 Query: 61 SLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E T I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEL 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNSDGVIRRDETIS 172 K +++ + +R+ Y FK + G++IS + + ++ N+ ++ ++ + E S Sbjct: 117 KNQFNEELTKKKRESIYNFFKQQEGKLISAKIISENDKFYNLELE-KEITTLLPKKEIAS 175 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 176 NNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARI 235 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R K+ + S D+ +D +G+C+G R +R++ V+ L+DEK+D+ VWS D + NAL+ Sbjct: 236 SGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKDEKVDLFVWSDDPQELIANALK 295 Query: 293 PAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W IDI T Sbjct: 296 PASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKT 347 >gi|189345843|ref|YP_001942372.1| transcription elongation factor NusA [Chlorobium limicola DSM 245] gi|189339990|gb|ACD89393.1| NusA antitermination factor [Chlorobium limicola DSM 245] Length = 513 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 193/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++V+EV+ +ISL R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILRKIVQEVDIPAIEISLDEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+D+G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDESLDLGDFYEEGPIRLEDYLTRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQR----- 194 V ++ VI S V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRLD 223 Query: 195 ------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK++V Sbjct: 224 DGGVVEKEKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVSVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + + Sbjct: 284 STSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|195953996|ref|YP_002122286.1| transcription elongation factor NusA [Hydrogenobaculum sp. Y04AAS1] gi|195933608|gb|ACG58308.1| NusA antitermination factor [Hydrogenobaculum sp. Y04AAS1] Length = 322 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDG 163 D R+A +AK+ ++++ AER+R +LE+ + G I+ G V+ + IVDLG D Sbjct: 74 DLNRIAAYAAKEEFLKELENAERERGFLEYVSQEGNIVHGIVREITKDQTAIVDLGPIDA 133 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + R E IS+E+ + DRVK+ ++ V++E+ P +LLSRTHP+F+ +L E+PE+ G+ Sbjct: 134 ELPRREQISKESFKKNDRVKALLFSVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGL 193 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V++ +V+R+PG +AK+ V + D IDPVG +G++GS++ + EL E ID+V +S D Sbjct: 194 VKIISVAREPGEKAKVVVDTEDKKIDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDK 253 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ N PA + V E +IEV V K+Q+SLAIG+RG N +LA ++ G ID+++ Sbjct: 254 KKFLENLFFPAKILDV--RESDNQIEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMS 311 Query: 344 EEE 346 +E+ Sbjct: 312 KED 314 >gi|21673079|ref|NP_661144.1| transcription elongation factor NusA [Chlorobium tepidum TLS] gi|21646150|gb|AAM71486.1| N utilization substance protein A, putative [Chlorobium tepidum TLS] Length = 521 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 193/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ + IQK R Y + + INPE GD ++ L ++V+EV+ T +I L R Sbjct: 44 IADLLKEIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDLPTIEIGLDEVRQ 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDDSLELGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERLAVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI S V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRPNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRND 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + + Sbjct: 284 STSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|78213595|ref|YP_382374.1| transcription elongation factor NusA [Synechococcus sp. CC9605] gi|78198054|gb|ABB35819.1| NusA antitermination factor [Synechococcus sp. CC9605] Length = 481 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 204/365 (55%), Gaps = 33/365 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + D ++ EK + VV + + +++ K R+LY G D E D+ L Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVGLD 68 Query: 63 -----FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQ 112 +R+L +V+EVE+ QI++ +G VV D P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VI 165 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 166 RRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 RRD+ + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V Sbjct: 189 RRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSV 247 Query: 225 QVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 ++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 248 RIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVI 307 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 WS D ++ N+L PA V V L + VG+ V+VP +QLSLAIGR GQNVRLA++LTG Sbjct: 308 RWSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTG 367 Query: 337 WTIDI 341 W IDI Sbjct: 368 WKIDI 372 >gi|148240413|ref|YP_001225800.1| transcription elongation factor NusA [Synechococcus sp. WH 7803] gi|147848952|emb|CAK24503.1| Transcription elongation factor NusA [Synechococcus sp. WH 7803] Length = 469 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 176/292 (60%), Gaps = 19/292 (6%) Query: 68 VVEEVENYTCQISL-KVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 +V+EVE+ QI+L +V + D + VV D P DFGR+A + KQV+ QK+R+ Sbjct: 82 IVDEVESEDHQIALAEVMQVADDAQSGDTVVLDVTPEKEDFGRMAAATTKQVLAQKLRDQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRP 178 +R EF D +++ V R E +VI+ + + G + RRD+ + +N R Sbjct: 142 QRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LPNDNYRA 200 Query: 179 GDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP---- 233 K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ AV+R+ Sbjct: 201 NATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVAVAREANPPS 260 Query: 234 ---GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS D ++ N+ Sbjct: 261 RSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSSDPGQYIANS 320 Query: 291 LRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L PA V V L + VG+ V+VP +QLSLAIGR GQNVRLA++LTGW IDI Sbjct: 321 LSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDI 372 >gi|113477415|ref|YP_723476.1| transcription elongation factor NusA [Trichodesmium erythraeum IMS101] gi|110168463|gb|ABG53003.1| NusA antitermination factor [Trichodesmium erythraeum IMS101] Length = 426 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 172/291 (59%), Gaps = 17/291 (5%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQVIIQKVREA 125 +VEEV N I+L+ + + V + P +FGR+A KQV+ QK+R+ Sbjct: 80 IVEEVTNPDHHIALQEVLEVASEAQLNDTVFLDVTPEKNEFGRMAAIQTKQVLAQKLRDQ 139 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR------RDETISRENLRPG 179 +R EF+D GE++ V R E +VI+ + + G + + E + +N R Sbjct: 140 QRKMIQEEFQDLEGEVLQARVLRFEKQSVILAVSSGFGRLEVEAELPKKEQLPNDNYRAN 199 Query: 180 DRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP----- 233 K Y+ V RGPQ+L+SR +V LF EVPEI + +V++ AV+R+ Sbjct: 200 ATFKVYLKRVCEGSTRGPQLLVSRADAGLVVYLFENEVPEIEDEVVRIVAVAREANPPSR 259 Query: 234 --GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD + ++ N+L Sbjct: 260 HVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDPSIYIANSL 319 Query: 292 RPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 PA V +V ++D + R ++V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 320 SPARVDEVRLIDPEERRSHILVSEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 >gi|300858700|ref|YP_003783683.1| transcription elongation protein [Corynebacterium pseudotuberculosis FRC41] gi|300686154|gb|ADK29076.1| transcription elongation protein [Corynebacterium pseudotuberculosis FRC41] gi|302206410|gb|ADL10752.1| Transcription elongation protein [Corynebacterium pseudotuberculosis C231] gi|302330966|gb|ADL21160.1| Transcription elongation protein [Corynebacterium pseudotuberculosis 1002] gi|308276653|gb|ADO26552.1| Transcription elongation protein [Corynebacterium pseudotuberculosis I19] Length = 332 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 104/248 (41%), Positives = 154/248 (62%), Gaps = 9/248 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDL 158 P +FGRV Q+ + I +++REAE + Y + + G ++SG V+ Y N +V L Sbjct: 80 PANFGRVGAQAVRDAIKKRLREAETWKAYDAYSEYEGRVVSGIVQADAYANERGITVVHL 139 Query: 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G DG++ E I E L GDRVK Y+ V R R Q+ LSRTHP+ + +LF + Sbjct: 140 GTEAEGQDGILIPAEQIPGEKLVHGDRVKCYVVGVNRTPRNLQINLSRTHPELVRRLFEL 199 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 E+PE+ +G V++ +++R+ G R+K+AV ++ ++ GAC+G RG RV ++ EL EKI Sbjct: 200 EIPEVADGSVEIISIAREAGHRSKVAVRANIKGLNAKGACIGPRGQRVNNIMNELGGEKI 259 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQ 333 DI+ + D A +V NAL P+ V V + + G+ +V VP QLSLAIG+ GQN RLA++ Sbjct: 260 DIIDFDEDPAKYVGNALAPSKVVHVEITDLEGQAAKVTVPDYQLSLAIGKEGQNARLAAR 319 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 320 LTGWKIDI 327 >gi|218960602|ref|YP_001740377.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] gi|167729259|emb|CAO80170.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] Length = 411 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/420 (28%), Positives = 240/420 (57%), Gaps = 14/420 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN L+ L A+ K +++D + +++ +++ + + ++V I+ G + Sbjct: 1 MSANMLDALNKLAAI---KQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVK 57 Query: 62 LFRLLEVVEEVENYTCQISLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + + +V E E QISL AR D ++ +G + + +F V++ +++I Sbjct: 58 V-KFKSLVVEREEGLGQISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQD 116 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+R+ E ++ +F + I++G +K ++ YG I+D G+ D ++ DE I E R G Sbjct: 117 KIRQLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGHVDALLPVDEQIENEFYRVG 176 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D +K+Y+ ++R ++ G ++LSRT+P+F+ KLF E+P I++G ++++ + R+PG R K+ Sbjct: 177 DNIKAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKV 236 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 + + D +DP+ ACVG +G+R+ ++ EL E+IDIV+ S D + NAL + +V Sbjct: 237 ELEAEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALGVEGIKRV 296 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--EEEDSINRQKDFNE 357 +++ + VI+ + +AIG++G+NV+LA++L G IDI T E E+ + +++ Sbjct: 297 IIERN-HSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEEKMAKER---- 351 Query: 358 RTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 RT + ++ V IA L G+ V+++ + E+ ++EG ++TA ++ A+ + Sbjct: 352 RTVSHITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAKYF 411 >gi|87125354|ref|ZP_01081200.1| NusA antitermination factor [Synechococcus sp. RS9917] gi|86167123|gb|EAQ68384.1| NusA antitermination factor [Synechococcus sp. RS9917] Length = 463 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 202/365 (55%), Gaps = 33/365 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + D ++ EK + VV + + +++ K R+LY G D E D++L Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISDDPFDEEYFSNFDVALD 68 Query: 63 -----FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQ 112 +R+L +VEEVE+ QI+L +G VV D P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VI 165 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 166 RRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 RRD+ + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V Sbjct: 189 RRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSV 247 Query: 225 QVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 ++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 248 RIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVI 307 Query: 278 VWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 WS D ++ N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTG Sbjct: 308 RWSADPGQYIANSLSPARVDVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTG 367 Query: 337 WTIDI 341 W IDI Sbjct: 368 WKIDI 372 >gi|116073742|ref|ZP_01471004.1| transcription elongation factor NusA [Synechococcus sp. RS9916] gi|116069047|gb|EAU74799.1| transcription elongation factor NusA [Synechococcus sp. RS9916] Length = 493 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 175/297 (58%), Gaps = 19/297 (6%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPMD-FGRVAVQSAKQVIIQKVREA 125 +VEEVE+ QI+L +G VV D P + FGR+A + KQV+ QK+R+ Sbjct: 82 IVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEEFGRMAAATTKQVLAQKLRDQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRP 178 +R EF D +++ V R E +VI+ + + G + RRD+ + +N R Sbjct: 142 QRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LPNDNYRA 200 Query: 179 GDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP---- 233 K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ AV+R+ Sbjct: 201 NATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVAVAREANPPS 260 Query: 234 ---GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS D ++ N+ Sbjct: 261 RSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQDPGQYIANS 320 Query: 291 LRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 L PA V V L + VG+ V+VP +QLSLAIGR GQNVRLA++LTGW IDI +E Sbjct: 321 LSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKNSQE 377 >gi|78184171|ref|YP_376606.1| transcription elongation factor NusA [Synechococcus sp. CC9902] gi|78168465|gb|ABB25562.1| NusA antitermination factor [Synechococcus sp. CC9902] Length = 485 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 205/368 (55%), Gaps = 39/368 (10%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + D ++ EK + VV + + +++ K R+LY G D E D+ L Sbjct: 9 LTNLIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLD 68 Query: 63 -----FRLLE---VVEEVENYTCQISL----KVARDRDPSIDIGGVVSDPLPPM-DFGRV 109 +R+L +V+EVE+ QI+L +VA D VV D P DFGR+ Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQSG---DTVVLDVTPEKEDFGRM 125 Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG------ 163 A + KQV+ QK+R+ +R EF D +++ V R E ++I+ + + G Sbjct: 126 AAATTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEA 185 Query: 164 -VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + RRD+ + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI Sbjct: 186 ELPRRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQE 244 Query: 222 GIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 G V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKI Sbjct: 245 GSVRIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKI 304 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQ 333 D++ WS D ++ N+L PA V V L + G+ V+VP +QLSLAIGR GQNVRLA++ Sbjct: 305 DVIRWSQDPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAAR 364 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 365 LTGWKIDI 372 >gi|114777565|ref|ZP_01452546.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] gi|114552036|gb|EAU54553.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] Length = 235 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 160/234 (68%), Gaps = 3/234 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E+LQ+ADAVA EKS+DR++VL M +++ AAR Y + ++ EI+ +TG+I LF + Sbjct: 3 VEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTYPGL-NVEAEIDRDTGEIRLFHVR 61 Query: 67 EVVEEVENYTCQISLKVARD-RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEVE+ +++++ A+ RD ++ +G L P++ GR+A Q+AKQVI QK+REA Sbjct: 62 VAVEEVEDQDNELTVEEAQALRDDAV-LGSEFRTALAPIELGRIAAQTAKQVINQKIREA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+R E++ +VGE+I+G VKRVE GNV VDLG + V+ R++ + RE R GDRV++Y Sbjct: 121 ERERVIAEYEPRVGELITGIVKRVERGNVYVDLGRGEAVMYREDLLPRETFRQGDRVRAY 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + +VR + +GP V +SR+ +++LF EVPEI +G V ++ + P A+L Sbjct: 181 LREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234 >gi|260434603|ref|ZP_05788573.1| transcription termination factor NusA [Synechococcus sp. WH 8109] gi|260412477|gb|EEX05773.1| transcription termination factor NusA [Synechococcus sp. WH 8109] Length = 483 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 208/369 (56%), Gaps = 41/369 (11%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + D ++ EK + VV + + +++ K R+LY G D E D+ L Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLD 68 Query: 63 -----FRLLE---VVEEVENYTCQIS----LKVARDRDPSIDIG-GVVSDPLPPM-DFGR 108 +R+L +V+EVE+ QI+ ++VA D +G VV D P DFGR Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIAIAEVMQVADD----AQVGDTVVLDVTPEKEDFGR 124 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG----- 163 +A + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G Sbjct: 125 MAAATTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVE 184 Query: 164 --VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + RRD+ + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI Sbjct: 185 AELPRRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQ 243 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 G V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 244 EGSVRIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEK 303 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WS D ++ N+L PA V V L + VG+ V+VP +QLSLAIGR GQNVRLA+ Sbjct: 304 IDVIRWSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAA 363 Query: 333 QLTGWTIDI 341 +LTGW IDI Sbjct: 364 RLTGWKIDI 372 >gi|116071183|ref|ZP_01468452.1| transcription elongation factor NusA [Synechococcus sp. BL107] gi|116066588|gb|EAU72345.1| transcription elongation factor NusA [Synechococcus sp. BL107] Length = 492 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 205/368 (55%), Gaps = 39/368 (10%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLY-GTMSDIRVEINPETGDISL- 62 L + D ++ EK + VV + + +++ K R+LY G D E D+ L Sbjct: 9 LTNLIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLD 68 Query: 63 -----FRLLE---VVEEVENYTCQISL----KVARDRDPSIDIGGVVSDPLPPM-DFGRV 109 +R+L +V+EVE+ QI+L +VA D VV D P DFGR+ Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAG---DTVVLDVTPEKEDFGRM 125 Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG------ 163 A + KQV+ QK+R+ +R EF D +++ V R E ++I+ + + G Sbjct: 126 AAATTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEA 185 Query: 164 -VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + RRD+ + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI Sbjct: 186 ELPRRDQ-LPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQE 244 Query: 222 GIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 G V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKI Sbjct: 245 GSVRIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKI 304 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQ 333 D++ WS D ++ N+L PA V V L + G+ V+VP +QLSLAIGR GQNVRLA++ Sbjct: 305 DVIRWSQDPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAAR 364 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 365 LTGWKIDI 372 >gi|88807314|ref|ZP_01122826.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] gi|88788528|gb|EAR19683.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] Length = 470 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 176/292 (60%), Gaps = 19/292 (6%) Query: 68 VVEEVENYTCQISL-KVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 +V+EVE+ QI+L +V + D + VV D P DFGR+A + KQV+ QK+R+ Sbjct: 82 IVDEVESEDHQIALAEVMQVADDAQAGDTVVLDVTPEKEDFGRMAAATTKQVLAQKLRDQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRENLRP 178 +R EF D +++ V R E +VI+ + + G + RRD+ + +N R Sbjct: 142 QRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LPNDNYRA 200 Query: 179 GDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP---- 233 K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ AV+R+ Sbjct: 201 NATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVAVAREANPPS 260 Query: 234 ---GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS D ++ N+ Sbjct: 261 RSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSADPGQYIANS 320 Query: 291 LRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L PA V V L + VG+ V+VP +QLSLAIGR GQNVRLA++LTGW IDI Sbjct: 321 LSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDI 372 >gi|300933074|ref|ZP_07148330.1| transcription elongation factor NusA [Corynebacterium resistens DSM 45100] Length = 331 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 114/268 (42%), Positives = 158/268 (58%), Gaps = 11/268 (4%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 +RD ++ G D P DFGR + + I +++EA R Y E+ D ++SG Sbjct: 61 ERDEDGEVTGRFDDT--PSDFGRAGAMAVRDAIRYRIKEARVQRDYDEYADLRYRVVSGV 118 Query: 146 VKRV----EYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 V R E G V+V LG DG I E + E L G RVK+Y+ DV + R Q Sbjct: 119 VTRNAMANERGVVVVHLGTEAKGKDGEILPAEQLPGEKLEHGMRVKAYVTDVIKNSRFVQ 178 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 +++SRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+AV S+ ++ GAC+G Sbjct: 179 IIMSRTHPELVRGLFALEVPEVADGSVEIVSVAREAGHRTKIAVRSTIKGLNAKGACIGP 238 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 RG RV A+ EL EKIDI+ +S D A +V NAL P+ V +V V D D +VP Q Sbjct: 239 RGQRVAAIQRELGGEKIDIIDFSEDPAVYVGNALSPSKVVRVDVTDPDFQVARAVVPDYQ 298 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITE 344 LSLAIG+ GQN RLA++LTGW IDI E Sbjct: 299 LSLAIGKEGQNARLAARLTGWKIDIRPE 326 >gi|260889854|ref|ZP_05901117.1| transcription termination factor NusA [Leptotrichia hofstadii F0254] gi|260860460|gb|EEX74960.1| transcription termination factor NusA [Leptotrichia hofstadii F0254] Length = 386 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 202/341 (59%), Gaps = 5/341 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+ ++ + Sbjct: 10 FLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVYSQRLI 69 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++QKVRE E+ Sbjct: 70 VENVENPEEEISLQDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKR 129 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +FK+ I+S V++ E GN+ VD+ + ++ E + R GDR+K YI Sbjct: 130 NIFNKFKEIENSIVSANVRKTDEKGNLYVDINGLEAIVPAKELSPVDIFRQGDRIKIYIG 189 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + + +SR + + L +EVPEIY I++++ ++R+ GSR+K+AV+S+D + Sbjct: 190 AVEESTKFTKTFVSRKSEELLRGLLELEVPEIYEEIIEIRNIAREAGSRSKVAVYSNDEN 249 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL----DE 303 +D GAC+G G R+Q ++ EL EKIDIV+W+ D FV NAL PA V V + +E Sbjct: 250 LDVKGACIGRNGMRIQNIIDELCGEKIDIVLWNEDITEFVKNALNPAEVLSVEIIEEGEE 309 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++ V+V + QLSLAIG++GQN RLA++L G IDI TE Sbjct: 310 NMKVARVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTE 350 >gi|309804431|ref|ZP_07698499.1| transcription termination factor NusA [Lactobacillus iners LactinV 09V1-c] gi|308166244|gb|EFO68459.1| transcription termination factor NusA [Lactobacillus iners LactinV 09V1-c] Length = 248 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 148/230 (64%), Gaps = 2/230 (0%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +Q++REAER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P Sbjct: 1 MQRLREAERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKP 60 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+K + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K Sbjct: 61 QDRIKVLVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTK 120 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV SSD +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V Sbjct: 121 IAVKSSDPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIA 180 Query: 299 VVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V E D VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 181 VQFGEANDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 230 >gi|33241096|ref|NP_876038.1| transcription elongation factor NusA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238625|gb|AAQ00691.1| Transcription elongation factor NusA [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 472 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 125/300 (41%), Positives = 175/300 (58%), Gaps = 25/300 (8%) Query: 68 VVEEVENYTCQISL----KVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKV 122 +VEEV++ QI+L +VA D VV D P + FGR+A + KQV+ QK+ Sbjct: 82 IVEEVDSEDHQIALAEVMQVAEDAQAG---DTVVLDVTPEKEEFGRMAASTTKQVLSQKL 138 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISREN 175 R+ +R EF D +++ V R E +VI+ + + G + RRD+ + +N Sbjct: 139 RDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LPNDN 197 Query: 176 LRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP- 233 R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ AV+R+ Sbjct: 198 YRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVAVAREAN 257 Query: 234 ------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS D ++ Sbjct: 258 PPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSTDPIQYI 317 Query: 288 INALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 N+L PA V V L D D V+VP +QLSLAIGR GQNVRLA++LTGW IDI +E Sbjct: 318 CNSLSPARVENVRLVDPDGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKNSQE 377 >gi|16329287|ref|NP_440015.1| transcription elongation factor NusA [Synechocystis sp. PCC 6803] gi|1651767|dbj|BAA16695.1| N utilization substance protein [Synechocystis sp. PCC 6803] Length = 458 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 184/313 (58%), Gaps = 17/313 (5%) Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM 104 ++ VE++ E + +VEEVEN QISLK + +G VV D P Sbjct: 57 FNNFEVELDTEEEGFRVLSTKRIVEEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQ 116 Query: 105 -DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 DFGR+A KQV++QK+R+ +R EF+D G +++ R E ++IV + +S G Sbjct: 117 KDFGRMAAIQTKQVLLQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFG 176 Query: 164 V------IRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEV 216 + + E + +N R + Y+ VR QRGPQ+++SR +V LF +EV Sbjct: 177 QPEVEAELPKREQLPNDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEV 236 Query: 217 PEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 PEI +V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+ AVV EL Sbjct: 237 PEIEEEVVRIVAVAREAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNEL 296 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE-VIVPKEQLSLAIGRRGQNV 328 R EKID++ WSPD AT++ AL PA V +V L R VIV ++QLSLAIG+ GQNV Sbjct: 297 RGEKIDVIRWSPDPATYIAQALSPARVDQVYLIHAEERHALVIVAEDQLSLAIGKEGQNV 356 Query: 329 RLASQLTGWTIDI 341 RLA++LTGW IDI Sbjct: 357 RLAARLTGWKIDI 369 >gi|113954345|ref|YP_731568.1| transcription elongation factor NusA [Synechococcus sp. CC9311] gi|113881696|gb|ABI46654.1| transcription termination factor NusA [Synechococcus sp. CC9311] Length = 501 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 174/295 (58%), Gaps = 25/295 (8%) Query: 68 VVEEVENYTCQISL----KVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKV 122 +V+EVE+ QI+L +VA D VV D P DFGR+A + KQV+ QK+ Sbjct: 82 IVDEVESEDHQIALAEVMQVAEDAQAG---DTVVLDVTPEKEDFGRMAAATTKQVLAQKL 138 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISREN 175 R+ +R EF D +++ V R E ++I+ + + G + RRD+ + +N Sbjct: 139 RDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRDQ-LPNDN 197 Query: 176 LRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP- 233 R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ AV+R+ Sbjct: 198 YRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVAVAREAN 257 Query: 234 ------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS D + ++ Sbjct: 258 PPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQDPSQYI 317 Query: 288 INALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW IDI Sbjct: 318 ANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDI 372 >gi|289810678|ref|ZP_06541307.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 236 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 153/233 (65%), Gaps = 6/233 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDR 181 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 236 >gi|194476586|ref|YP_002048765.1| transcription elongation factor NusA [Paulinella chromatophora] gi|171191593|gb|ACB42555.1| transcription elongation factor NusA [Paulinella chromatophora] Length = 468 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 122/293 (41%), Positives = 170/293 (58%), Gaps = 21/293 (7%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVIIQKVREA 125 +VEEVE+ QI+L R + G V + P DFGR+A KQV+ +K+RE Sbjct: 82 IVEEVESEDHQIALSDVRQVTEDVHAGDTVVLDVTPAKEDFGRMAAAMTKQVLSRKLREQ 141 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR--------RDETISRENLR 177 +R EF D +++ V R E +VI L S G+ R R + + +N R Sbjct: 142 QRRMIQEEFADLEDPVLTARVIRFERQSVI--LAVSSGLSRPEVEAELPRRDQLPNDNYR 199 Query: 178 PGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR--DPG 234 K ++ ++ +RGPQ+ +SR + +V LF EVPEI G V++ AV+R +P Sbjct: 200 ANATFKVFLKEISEVPRRGPQLFVSRVNAGLVVYLFENEVPEIQEGSVRIVAVAREANPP 259 Query: 235 SRA-----KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 SR K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD A ++ N Sbjct: 260 SRTVSPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSPDPAQYISN 319 Query: 290 ALRPAIVTKVVLDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ PA V + L + G V+V +QLSLAIGR GQNVRLA++LTGW IDI Sbjct: 320 SISPARVHNIRLIDPAGHHAHVLVTPDQLSLAIGREGQNVRLAARLTGWKIDI 372 >gi|85057852|ref|YP_456768.1| transcription elongation factor NusA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789957|gb|ABC65689.1| N utilization substance protein A [Aster yellows witches'-broom phytoplasma AYWB] Length = 357 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/358 (30%), Positives = 199/358 (55%), Gaps = 14/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N +LL D +A E +D+D V+ A + + + S ++ + + +I Sbjct: 1 MISKNFFKLL---DKIAQESGLDKDQVIDAFAKGLISGCKKNHKVKS-CKIHLKEDKSEI 56 Query: 61 SLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E T I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATISTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNSDGVIRRDETIS 172 K +++ + +R+ Y FK + G++IS + + ++ N+ ++ ++ + E S Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEITTLLPKKEIAS 175 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 ++ G+R++ ++ +V++ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 176 NNEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARI 235 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R K+ +FS D+ ID +G+C+G R +R++ V+ L+ EKID+ +WS D + NAL+ Sbjct: 236 SGERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIKILKGEKIDLFIWSDDPQELIANALK 295 Query: 293 PAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I Sbjct: 296 PASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQI 353 >gi|189499377|ref|YP_001958847.1| transcription elongation factor NusA [Chlorobium phaeobacteroides BS1] gi|189494818|gb|ACE03366.1| NusA antitermination factor [Chlorobium phaeobacteroides BS1] Length = 521 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 193/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L VV+EV+ + +I L+ Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKTVVDEVDLPSIEIGLEEVSR 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + + P+ D+ R ++Q KQ + +KVR+ E+ Y + +KVGE+++G Sbjct: 104 IDESLELGDMYEEGPVNLEDYLTRKSIQIIKQSVQKKVRDMEKQVVYEDCLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI S V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRQNEVIFSYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRQD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGSIVEKEKPDGGMKVIVSRIDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ D ++ AL+PA + + + Sbjct: 284 STSSRIDPVGASVGYRGKRIQSIVKELNNENIDVINFTDDPQIYIARALQPAKIDPMTVH 343 Query: 303 EDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ EQ+ AIG+ G N+ LA +LTG+ +D+ Sbjct: 344 ADMKTHKARVMLKPEQIKYAIGKNGNNIHLAERLTGYDVDV 384 >gi|124026598|ref|YP_001015713.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL1A] gi|123961666|gb|ABM76449.1| N utilization substance protein A [Prochlorococcus marinus str. NATL1A] Length = 497 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 27/301 (8%) Query: 68 VVEEVENYTCQIS----LKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQVIIQK 121 +VEEVE+ QI+ ++VA D +G VV D P DFGR+A + KQV+ QK Sbjct: 82 IVEEVESDDHQIAIAEVMQVADD----AQVGDTVVLDVTPEKEDFGRMAAATTKQVLAQK 137 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRE 174 +R+ +R EF D +++ V R E +VI+ + + G + RRD+ + + Sbjct: 138 LRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LPND 196 Query: 175 NLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ AV+R+ Sbjct: 197 NYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVAVAREA 256 Query: 234 -------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS D + Sbjct: 257 NPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIRWSSDPVQY 316 Query: 287 VINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW IDI + Sbjct: 317 ICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKNSQ 376 Query: 346 E 346 E Sbjct: 377 E 377 >gi|145220365|ref|YP_001131074.1| transcription elongation factor NusA [Prosthecochloris vibrioformis DSM 265] gi|145206529|gb|ABP37572.1| NusA antitermination factor [Chlorobium phaeovibrioides DSM 265] Length = 551 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 192/341 (56%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIRK 103 Query: 87 RDPSIDIGGVVSDPLPPMD--FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + +D R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 104 IDESLEVGDFYEEGPIKLDEYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVVAA 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R R+K Y+ ++ RE+ Sbjct: 164 EVYQVRSNEVIFTYNTTKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKIRLE 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTIEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + + Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYNDEPQVYISRALQPAKIDPLTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ + V++ +Q+ AIG+ G N+ LA +LTG+ I++ Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIEV 384 >gi|218247498|ref|YP_002372869.1| transcription elongation factor NusA [Cyanothece sp. PCC 8801] gi|257061166|ref|YP_003139054.1| transcription elongation factor NusA [Cyanothece sp. PCC 8802] gi|218167976|gb|ACK66713.1| NusA antitermination factor [Cyanothece sp. PCC 8801] gi|256591332|gb|ACV02219.1| NusA antitermination factor [Cyanothece sp. PCC 8802] Length = 412 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 129/311 (41%), Positives = 185/311 (59%), Gaps = 17/311 (5%) Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM-D 105 + VE++ E + ++VE VEN ISL+ ++ +G VV D P D Sbjct: 60 NFEVELDTEEEGFRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEVVLDVTPNQKD 119 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-- 163 FGR+A KQV++QK+R+ +R EF + G +++ V R E + IV + ++ G Sbjct: 120 FGRMAAIQTKQVLLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQP 179 Query: 164 ----VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPE 218 V+ + E + +N R K + VR RGPQ+++SR+ +V LF +EVPE Sbjct: 180 EVEAVLPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPE 239 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I IV++ AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR Sbjct: 240 IEEEIVRIVAVSREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 299 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA V V+L + D V+V ++QLSLAIG+ GQNVRL Sbjct: 300 EKIDVIRWSPDPATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRL 359 Query: 331 ASQLTGWTIDI 341 A++LTGW IDI Sbjct: 360 AARLTGWKIDI 370 >gi|159904155|ref|YP_001551499.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9211] gi|159889331|gb|ABX09545.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9211] Length = 471 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 210/374 (56%), Gaps = 41/374 (10%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLYGTMSDIRVE----INPETG-- 58 L + D ++ EK + VV + + +++ K R+LY +++ E N + G Sbjct: 9 LNNLIDDISEEKKLPAQVVETALREALLKGYERYRRTLYLGINENPFEEEYFSNFDVGLD 68 Query: 59 -DISLFRLLE---VVEEVENYTCQISL----KVARDRDPSIDIG-GVVSDPLPPMD-FGR 108 D +R+L +V+EVE+ QI+L +VA D IG VV D P + FGR Sbjct: 69 LDEEGYRVLASKIIVDEVESEDHQIALSEVMQVAED----AQIGDTVVLDVTPEKEEFGR 124 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG----- 163 +A + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + G Sbjct: 125 MAAATTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVE 184 Query: 164 --VIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + RRD+ + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI Sbjct: 185 AELPRRDQ-LPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQ 243 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 G V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 244 EGSVRIVAVAREANPPTRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEK 303 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WS D ++ N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA+ Sbjct: 304 IDVIRWSADPVQYISNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAA 363 Query: 333 QLTGWTIDIITEEE 346 +LTGW IDI +E Sbjct: 364 RLTGWKIDIKNSQE 377 >gi|42565347|gb|AAS20956.1| NusA [Clover phyllody phytoplasma] Length = 357 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 200/358 (55%), Gaps = 14/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N +LL D +A E+ +D+D V+ A + + + S ++++ + +I Sbjct: 1 MISKNFFKLL---DKIAQERDLDKDQVIGAFAKGLISGCKKNHKVKS-CKIQLKEDKSEI 56 Query: 61 SLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E T I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNSDGVIRRDETIS 172 K +++ + +R+ Y FK + G++IS + + ++ N+ ++ ++ + E S Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEITTLLPKKEIAS 175 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 176 NNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARI 235 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS D + NAL+ Sbjct: 236 SGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSDDPQELIANALK 295 Query: 293 PAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I Sbjct: 296 PASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQI 353 >gi|72382861|ref|YP_292216.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL2A] gi|72002711|gb|AAZ58513.1| transcription termination factor NusA [Prochlorococcus marinus str. NATL2A] Length = 497 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 178/301 (59%), Gaps = 27/301 (8%) Query: 68 VVEEVENYTCQIS----LKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQVIIQK 121 +VE+VE+ QI+ ++VA D +G VV D P DFGR+A + KQV+ QK Sbjct: 82 IVEDVESDDHQIAIAEVMQVADD----AQVGDTVVLDVTPEKEDFGRMAAATTKQVLAQK 137 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-------VIRRDETISRE 174 +R+ +R EF D +++ V R E +VI+ + + G + RRD+ + + Sbjct: 138 LRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQ-LPND 196 Query: 175 NLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ AV+R+ Sbjct: 197 NYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVAVAREA 256 Query: 234 -------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS D + Sbjct: 257 NPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIRWSSDPVQY 316 Query: 287 VINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + N+L PA V V L D + V+VP +QLSLAIGR GQNVRLA++LTGW IDI + Sbjct: 317 ICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKIDIKNSQ 376 Query: 346 E 346 E Sbjct: 377 E 377 >gi|38234060|ref|NP_939827.1| transcription elongation factor NusA [Corynebacterium diphtheriae NCTC 13129] gi|38200322|emb|CAE50007.1| Putative N utilization related protein [Corynebacterium diphtheriae] Length = 332 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 43/338 (12%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDI--------RVEINPETGDISLFRLLEVVEEVEN 74 DR++ + + ++I +A Y D RV+IN TG +S+ +V E Sbjct: 14 DRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVSV-----IVSE--- 65 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 +D GVV+ P +FGRV Q+ + I++++REAE + Y Sbjct: 66 ----------------LDEDGVVTTEYDDTPENFGRVGAQAVRDAIVRRLREAETLKAYD 109 Query: 133 EFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKS 184 + + G ++SG V+ + N V++ LG DG++ E I E+ + GDRVK+ Sbjct: 110 AYSEYEGRVVSGIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKHGDRVKA 169 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R R Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+AV ++ Sbjct: 170 YVVGINRTPRDLQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSKVAVKAT 229 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 ++ GAC+G RG RV ++ EL EKIDI+ + D A FV NAL P+ V V + D Sbjct: 230 VKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVHVEITDA 289 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +V VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 290 EAQTAQVTVPDYQLSLAIGKEGQNARLAARLTGWKIDI 327 >gi|225021163|ref|ZP_03710355.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii ATCC 33806] gi|305681535|ref|ZP_07404342.1| transcription termination factor NusA [Corynebacterium matruchotii ATCC 14266] gi|224946070|gb|EEG27279.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii ATCC 33806] gi|305659740|gb|EFM49240.1| transcription termination factor NusA [Corynebacterium matruchotii ATCC 14266] Length = 332 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 189/345 (54%), Gaps = 35/345 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDISLFRL 65 +Q A+ EK I V+L +A ++ A R + RV+I+ TG +++ Sbjct: 5 VQALKAIETEKGISVQVLLETIASALMHAYREYKDAPPAPNTQARVDIDIATGAVAV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++ E+++ V ++ D + P +F R+ + + I++++REA Sbjct: 62 --IISELDDEG-----NVVQEHDDT------------PANFERIGTVAVRDAIVKRLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISRENLR 177 E + Y + + G ++SG V+ E G V+V LG DG++ E I E L+ Sbjct: 103 ETRQAYDAYSEYEGRVVSGVVQADIHANERGIVVVHLGTEADGQDGILLPAEQIPGEQLK 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVKS++ V + LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+ Sbjct: 163 HGDRVKSFVVGVNHNSHSLSINLSRTHPELVRRLFELEIPEVADGSVEIVSIAREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV + ++ GAC+G RG RV ++ EL EKIDI+ +S + A +V NAL P+ V Sbjct: 223 KVAVRARVKGLNAKGACIGPRGQRVTNIMKELNGEKIDIIDYSDNPAEYVGNALAPSKVV 282 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V ++D V VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 283 DVEIIDATAQTARVTVPHYQLSLAIGKEGQNARLAARLTGWKIDI 327 >gi|194335549|ref|YP_002017343.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|194308026|gb|ACF42726.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 514 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 196/341 (57%), Gaps = 26/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VEE++ + +I+LK R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVEEIDIESIEITLKEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S++IG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGEI++G Sbjct: 104 IDDSLEIGDYYEEGPIRLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEIVAG 163 Query: 145 TVKRVEYGNVIVDLGNSDG-----VIRRDETISRENLRPGDRVKSYIYDVRREQR----- 194 V +V VI S V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRANEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRLD 223 Query: 195 ------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV Sbjct: 224 DGSMVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + + Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPLTVH 343 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 DV + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ Sbjct: 344 ADVKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >gi|294790399|ref|ZP_06755557.1| transcription termination factor NusA [Scardovia inopinata F0304] gi|294458296|gb|EFG26649.1| transcription termination factor NusA [Scardovia inopinata F0304] Length = 372 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 188/333 (56%), Gaps = 15/333 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ I+ + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 11 LAAEQGIEPERLDAALSEALRLAYLKTPHAARHARVELDERAGSFTVWAQKEIPQE---- 66 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 D P +G D P FGR A A+QVI R+ D + F Sbjct: 67 ------PTEEDPHPKPVLGEEYDDT--PEGFGRQAAYIARQVITALFRKVADDNIFGAFA 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G+RV+ Y+ V + Sbjct: 119 GQKGKLITGVVQQDSNDRGNLHIAVGDVEALLPRREQVPGERFRHGERVRVYVVSVNKGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ G VQ+ +++R+ G R K+AV ++ ++P G+ Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELVTGAVQIMSIAREAGERTKIAVRANAQGVNPKGS 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV-IV 312 +G G RV+AV+ L +EKIDIV WS D A FV AL PA KV + + + V ++ Sbjct: 239 LIGPAGQRVRAVMENLGNEKIDIVDWSEDPAKFVSAALSPAHAVKVSVVSERNKTAVALI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESYE 331 >gi|300780963|ref|ZP_07090817.1| transcription termination factor NusA [Corynebacterium genitalium ATCC 33030] gi|300532670|gb|EFK53731.1| transcription termination factor NusA [Corynebacterium genitalium ATCC 33030] Length = 341 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/253 (41%), Positives = 156/253 (61%), Gaps = 9/253 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDL 158 P++F RV Q+ + I++++R A +R Y + + G+++SG V+R E G V+V L Sbjct: 84 PVNFSRVGAQAVRDAILKRMRTAADNRAYSAYSELEGQVVSGVVQRDASANERGIVVVQL 143 Query: 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G DG++ E I E L GDRVK Y+ V R V LSRTHP+ + LF + Sbjct: 144 GTESDPQDGILLPAEQIPGEKLEHGDRVKCYVVGVSGGDRRTTVNLSRTHPELVRGLFAL 203 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPE+ +G V++ A++R+ G R+K+AV I+ GAC+G RG+RV ++ L EKI Sbjct: 204 EVPEVADGSVEIVAIAREAGHRSKVAVKGVAKGINAKGACIGPRGARVTNIMESLGGEKI 263 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI-EVIVPKEQLSLAIGRRGQNVRLASQ 333 DIV +S D A +V N+L P+ V +V + + + V+VP QLSLAIGR GQN RLA++ Sbjct: 264 DIVDYSDDPAVYVGNSLAPSKVVRVDVVDHDAQTARVVVPDYQLSLAIGREGQNARLAAR 323 Query: 334 LTGWTIDIITEEE 346 LTGW IDI ++ + Sbjct: 324 LTGWKIDIHSDAD 336 >gi|68536221|ref|YP_250926.1| transcription elongation factor NusA [Corynebacterium jeikeium K411] gi|68263820|emb|CAI37308.1| N utilization substance protein A [Corynebacterium jeikeium K411] Length = 337 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 190/340 (55%), Gaps = 32/340 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 AV ++S+D D +L + +++A R+ + V+I+P +G+++++++ Sbjct: 10 AVEKQESVDFDDLLEGVKRGLREAYRAKSHFTGPVDVDIDPISGEVTIYQV--------- 60 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR---VAVQSAKQVIIQKVREAERDRQY 131 ++D ++ G + D P +FGR +AV+ A + I R R +Y Sbjct: 61 -----------EKDEEGNVTGRIDDT--PKNFGRDGALAVREAIRFRINSARVQNRYDEY 107 Query: 132 LEFKDKV-GEIISGTVKRVEYGNVIVDLGN----SDGVIRRDETISRENLRPGDRVKSYI 186 E + +V ++S + E G IV LG DG I E I E L G RVK+++ Sbjct: 108 AELRYRVVSGVVSADARANERGVTIVHLGTEANGQDGQILPAEHIPGEELEHGMRVKAFV 167 Query: 187 YDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 DV R Q+ LSRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+AV S+ Sbjct: 168 TDVINNANRMVQINLSRTHPELVKGLFSLEVPEVADGSVEIVSVAREAGHRTKIAVRSTV 227 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V V V D + Sbjct: 228 KGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDDPATFVGNALSPSKVVSVKVTDPE 287 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +VP QLSLAIGR GQN RLA++LTGW IDI +E Sbjct: 288 MQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDIRSE 327 >gi|47093946|ref|ZP_00231683.1| N utilization substance protein A [Listeria monocytogenes str. 4b H7858] gi|47017684|gb|EAL08480.1| N utilization substance protein A [Listeria monocytogenes str. 4b H7858] Length = 248 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 155/245 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVG 252 +DPVG Sbjct: 244 VDPVG 248 >gi|159027908|emb|CAO89715.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 398 Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 188/327 (57%), Gaps = 17/327 (5%) Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSI 91 + S++KAA+ ++ VE++ E + +VEEV N I LK ++ Sbjct: 45 SQSLEKAAQFHEDYFNNFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEA 104 Query: 92 DIGG-VVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 +G VV D P +FGR+A KQV++QK+R+ +R EF+D G ++ V R Sbjct: 105 QLGDEVVLDVTPDQREFGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRF 164 Query: 150 EYGNVIVDLGNSDGV------IRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSR 202 E IV + ++ G + + E + +N R K + V QRGPQ+++SR Sbjct: 165 ERQAAIVMVQSTYGQPEVEAELPKREQLPNDNYRANATFKVLLKKVLEGSQRGPQLIVSR 224 Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACV 255 +V LF EVPEI IV++ AV+R+ GSR K+AV + + +DPVGAC+ Sbjct: 225 AAAGLVVYLFANEVPEIEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACI 284 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE-VIVPK 314 G RGSR+QAVV ELR EKID++ WSPD AT++ NAL PA + +V+ R V+V + Sbjct: 285 GARGSRIQAVVNELRGEKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQ 344 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 345 DQLSLAIGKEGQNVRLAARLTGWKIDI 371 >gi|307155148|ref|YP_003890532.1| NusA antitermination factor [Cyanothece sp. PCC 7822] gi|306985376|gb|ADN17257.1| NusA antitermination factor [Cyanothece sp. PCC 7822] Length = 396 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 183/308 (59%), Gaps = 17/308 (5%) Query: 51 VEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM-DFGR 108 VE++ E + ++VE V N ISL+ + +G VV D P +FGR Sbjct: 63 VELDTEEEGFRILSTKKIVESVTNSDHHISLEEVQAVVSEAQLGDEVVLDVTPDQKEFGR 122 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV---- 164 +A KQV++QK+R+ +R EF+D G +++ V R E VI+ + ++ G Sbjct: 123 MAAIQTKQVLLQKLRDQQRKLIQEEFQDVEGTVLNARVLRFERQAVIMAVQSTFGQPEVE 182 Query: 165 --IRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + + E + +N R K + VR RGPQ+++SR +V LF EVPEI Sbjct: 183 AELPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEIEE 242 Query: 222 GIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 +V++ AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR EKI Sbjct: 243 EVVRIVAVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKI 302 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 D++ WSPD AT++ NAL PA V +V+L + D + ++V ++QLSLAIG+ GQNVRLA++ Sbjct: 303 DVIRWSPDPATYIANALSPARVDEVILTNPDERQALILVAEDQLSLAIGKEGQNVRLAAR 362 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 363 LTGWKIDI 370 >gi|166364176|ref|YP_001656449.1| transcription elongation factor NusA [Microcystis aeruginosa NIES-843] gi|166086549|dbj|BAG01257.1| transcription termination factor [Microcystis aeruginosa NIES-843] Length = 398 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 187/327 (57%), Gaps = 17/327 (5%) Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSI 91 A S++KAA+ ++ VE++ E + +VEEV N I LK ++ Sbjct: 45 AQSLEKAAQFHEDYFNNFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEA 104 Query: 92 DIGG-VVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 +G VV D P +FGR+A KQV++QK+R+ +R EF+D G ++ V R Sbjct: 105 QLGDEVVLDVTPDQKEFGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRF 164 Query: 150 EYGNVIVDLGNSDGV------IRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSR 202 E IV + ++ G + + E + +N R K + V RGPQ+++SR Sbjct: 165 ERQAAIVMVQSTYGQPEVEAELPKREQLPNDNYRANATFKVLLKKVLEGSHRGPQLIVSR 224 Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACV 255 +V LF EVPEI IV++ AV+R+ GSR K+AV + + +DPVGAC+ Sbjct: 225 AAAGLVVYLFANEVPEIEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACI 284 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE-VIVPK 314 G RGSR+QAVV ELR EKID++ WSPD AT++ NAL PA + +V+ R V+V + Sbjct: 285 GARGSRIQAVVNELRGEKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQ 344 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 345 DQLSLAIGKEGQNVRLAARLTGWKIDI 371 >gi|218439319|ref|YP_002377648.1| transcription elongation factor NusA [Cyanothece sp. PCC 7424] gi|218172047|gb|ACK70780.1| NusA antitermination factor [Cyanothece sp. PCC 7424] Length = 405 Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 183/308 (59%), Gaps = 17/308 (5%) Query: 51 VEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPM-DFGR 108 VE++ E + ++VE V N ISLK ++ +G VV D P +FGR Sbjct: 63 VELDTEEEGFRILSTKKIVEAVSNTDHHISLKEVQEVVSEAQLGDEVVLDVTPDQKEFGR 122 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV---- 164 +A KQV++QK+R+ +R EF+D +++ V R E VI+ + ++ G Sbjct: 123 MAAIQTKQVLLQKLRDQQRKLIQEEFQDLESTVLTARVLRFERQAVIMAVQSAFGQPEVE 182 Query: 165 --IRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + + E + +N R K + VR RGPQ+++SR +V LF EVPEI Sbjct: 183 AELPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEIEE 242 Query: 222 GIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 +V++ AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR EKI Sbjct: 243 EVVRIVAVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKI 302 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 D++ WSPD +T++ NAL PA V +V+L + D + V+V ++QLSLAIG+ GQNVRLA++ Sbjct: 303 DVIRWSPDPSTYIANALSPARVDEVILTNPDERQALVLVAEDQLSLAIGKEGQNVRLAAR 362 Query: 334 LTGWTIDI 341 LTGW IDI Sbjct: 363 LTGWKIDI 370 >gi|289809601|ref|ZP_06540230.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 258 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 151/242 (62%), Gaps = 3/242 (1%) Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+D Sbjct: 3 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 62 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + + F Sbjct: 63 EDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIF 122 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 123 TKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQ 182 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGG 479 + + + +++L ++ G+D + L G+ T+EDLA +DDL G ++ K G Sbjct: 183 DQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAG 242 Query: 480 NI 481 + Sbjct: 243 EL 244 >gi|172040528|ref|YP_001800242.1| transcription elongation factor NusA [Corynebacterium urealyticum DSM 7109] gi|171851832|emb|CAQ04808.1| N utilization substance protein A [Corynebacterium urealyticum DSM 7109] Length = 332 Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 193/342 (56%), Gaps = 32/342 (9%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ + D ++ +A+ +++A R+ ++ V+I+P +G ++++++ Sbjct: 10 AIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQV--------- 60 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +RD ++ G + + P +F R + ++ I +++ A ++Y E+ Sbjct: 61 -----------ERDEEGNVTGRLDET--PENFDRTTALAMREAIRRRIGGARVQQRYDEY 107 Query: 135 KDKVGEIISGTVKR----VEYGNVIVDLGNS----DGVIRRDETISRENLRPGDRVKSYI 186 I+SG V R E G +V +G DG I E I E L+ G RVK+++ Sbjct: 108 SSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVLKHGTRVKAFV 167 Query: 187 YDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 DV + R Q+ LSRTHP+ + LF +EVPE+ +G V++ +++R+ G R K+AV ++ Sbjct: 168 TDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGHRTKIAVRATI 227 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVTKVVLDED 304 ++ GAC+G RG RV A++ EL EKIDI+ +S D A +V NAL P+ V+ V+D + Sbjct: 228 KGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSKYVSSTVIDAE 287 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIGR GQNVRLA++LT W IDI ++ E Sbjct: 288 QQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKSDAE 329 >gi|22299480|ref|NP_682727.1| transcription elongation factor NusA [Thermosynechococcus elongatus BP-1] gi|22295663|dbj|BAC09489.1| transcription termination-antitermination factor [Thermosynechococcus elongatus BP-1] Length = 395 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 189/338 (55%), Gaps = 23/338 (6%) Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP-- 103 ++ VE++ E + + E VEN +I+L + +G V + P Sbjct: 58 FANFEVELDTEQEGFRILATKTIKETVENPDREIALADVIEVVQDARVGDTVLLDVTPDH 117 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-- 161 +FGR+A KQV+ QK+R+ +R EFK+ G ++ G V R E +VI+ + + Sbjct: 118 QEFGRMAAMQTKQVLAQKLRDQQRRLIQEEFKELEGTVLLGRVLRFERQSVIMAVRSDAS 177 Query: 162 ----DGVIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEV 216 + + + E + +N R K Y+ V+ QRGPQ+ +SR +V LF EV Sbjct: 178 QPEVEAELPKWEQLPNDNYRANSTFKVYLKRVKEGPQRGPQLEVSRADAGLVVYLFANEV 237 Query: 217 PEIYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 PEI + +V++ A++R+ G R K+AV + + +DPVGAC+G RGSR+QAVV EL Sbjct: 238 PEIEDEVVRIVAIAREANPPNHKVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNEL 297 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI-EVIVPKEQLSLAIGRRGQNV 328 R EKID++ WSPD AT++ N+L PA V +V L RI V+V +++S AIG+ GQNV Sbjct: 298 RGEKIDVIRWSPDPATYIANSLSPAPVEEVRLINPEARIAHVLVAPDKVSQAIGKEGQNV 357 Query: 329 RLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 RLA++LTGW I++ DS Q ++ E + M A+ Sbjct: 358 RLATRLTGWKIEV----RDS--SQYNYEEEDRLAMAAL 389 >gi|28493123|ref|NP_787284.1| transcription elongation factor NusA [Tropheryma whipplei str. Twist] gi|28572761|ref|NP_789541.1| transcription elongation factor NusA [Tropheryma whipplei TW08/27] gi|28410894|emb|CAD67279.1| N utilization transcriptional termination/antitermination factor [Tropheryma whipplei TW08/27] gi|28476163|gb|AAO44253.1| N utilization substance protein A [Tropheryma whipplei str. Twist] Length = 319 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 106/249 (42%), Positives = 147/249 (59%), Gaps = 3/249 (1%) Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDL 158 P F R+A +AK+VI K+R D + +K K+G ++SG + + N +V L Sbjct: 71 PYKSDAFSRMAATAAKRVITSKMRTLSDDSTFARYKTKIGTVLSGVISQSTSQNFRMVSL 130 Query: 159 GN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 ++ ++R +E I E G VK Y+ DV RG V +SRTHP + LF EVP Sbjct: 131 DRRTEAILRPEEQIPGEEYPHGKMVKVYVTDVTLGPRGSNVYVSRTHPGLINGLFLQEVP 190 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EI +G V++ AVSR+ G R K++V S+ S VGACVG G RV+AV +E+ +EKIDI+ Sbjct: 191 EIASGTVEIVAVSREAGHRTKVSVRSNSKSTSAVGACVGEYGCRVRAVTSEICNEKIDII 250 Query: 278 VWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 +S D +V NA+ PA V VLD + V V KE+ SLAIG+ GQN RLA++LTG Sbjct: 251 SYSDDLGQYVANAISPATAADVFVLDSRQKVVRVYVSKEEYSLAIGKEGQNARLAARLTG 310 Query: 337 WTIDIITEE 345 IDI +E Sbjct: 311 AKIDIRIDE 319 >gi|255024911|ref|ZP_05296897.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-208] Length = 180 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 127/180 (70%) Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR Sbjct: 1 VREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDR 60 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V Sbjct: 61 IKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISV 120 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V++ Sbjct: 121 YTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIV 180 >gi|269123542|ref|YP_003306119.1| NusA antitermination factor [Streptobacillus moniliformis DSM 12112] gi|268314868|gb|ACZ01242.1| NusA antitermination factor [Streptobacillus moniliformis DSM 12112] Length = 362 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 112/349 (32%), Positives = 194/349 (55%), Gaps = 10/349 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ++ L + + EK I + +L + + A + + ++ +EI+ TGD+ Sbjct: 1 MKSKDKATFLDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDV 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 +F ++++ V N T +I A++ I +G + L +F R A+Q AK + Sbjct: 61 KMFCEKLIIDDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSI 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENL 176 IIQ +RE E++ + +I++ V+R+E G++ V + D +I + E S + + Sbjct: 121 IIQYIREQEKELICKQLTAIEHQIVNVIVRRIEENGSLYVGMNGLDLIIPQRELSSLDKV 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + GDR+ +YI V R P+V ++R + + KLF EVPEI +GI+ +K ++R+ G + Sbjct: 181 QVGDRLVAYIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVK 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+A++S D +ID G+C+G G R+ ++ EL EKI++V W+ D FV NAL PA + Sbjct: 241 AKVAIYSEDPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEI 300 Query: 297 TKVVL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + DE V ++E V QL+LAIG++G N +LA +L ++I Sbjct: 301 FSVEIVRNEDEIVAKVE--VDPSQLTLAIGKKGVNSKLAGKLCKLRVNI 347 >gi|194246707|ref|YP_002004346.1| transcription elongation factor NusA [Candidatus Phytoplasma mali] gi|193807064|emb|CAP18500.1| Transcription termination factor [Candidatus Phytoplasma mali] Length = 358 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 191/347 (55%), Gaps = 9/347 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + I A E + ++ + ++ R + S +V+I + +I+L++ Sbjct: 2 NSKDFFNIISEFAEENELTKEQIKDAFTKALIYGCRKAHKIKS-CKVDIKEDRNEINLYK 60 Query: 65 LLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +++ E Y I L+ A+ + +G +++ P DF AV+ K Sbjct: 61 QYYIIDPEEQYLNNYKDYTHIDLEEAKKIKKRVKVGQIINIKTNPKDFNLYAVKDFKNKF 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177 +++ + +R+ Y FK G++I+ V ++L ++ + ET+++E Sbjct: 121 KEELTKQKRENIYDYFKSYEGKLINAKVIGSNSKFYYLELEKEMTTLLPKKETLNKEIFA 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ YI +V++ + P++ +S+TH + K+F +PEI +G +++ ++R PG R Sbjct: 181 EGDRIRVYIVEVQKTTKLPRIFVSQTHIGLVTKIFEDWIPEINDGTLKIMMIARIPGERT 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+ +FS++ +DP+G+C+G G+R+++++ L+ EKID+ +WS + + N+L+PA + Sbjct: 241 KIGLFSNNPQVDPIGSCIGKNGNRIKSIIKLLQGEKIDLFLWSEKNEELISNSLQPAKIF 300 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +V + + + + VIV +QLSLAIG+ G+NV+LA+Q T W IDI T Sbjct: 301 QVNIKNLENKKALVIVEDDQLSLAIGKLGKNVKLAAQATKWNIDIKT 347 >gi|260578921|ref|ZP_05846824.1| N utilization substance protein A [Corynebacterium jeikeium ATCC 43734] gi|258602895|gb|EEW16169.1| N utilization substance protein A [Corynebacterium jeikeium ATCC 43734] Length = 292 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 110/252 (43%), Positives = 151/252 (59%), Gaps = 10/252 (3%) Query: 103 PMDFGR---VAVQSAKQVIIQKVREAERDRQYLEFKDKV-GEIISGTVKRVEYGNVIVDL 158 P +FGR +AV+ A + I+ R R +Y E + +V ++S + E G IV L Sbjct: 31 PKNFGRDGALAVREAIRFRIKSARVQNRYDEYAELRYRVVSGVVSADARANERGVTIVHL 90 Query: 159 GN----SDGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFH 213 G DG I E I E L G RVK+++ DV R Q+ LSRTHP+ + LF Sbjct: 91 GTEANGQDGQILPAEHIPGEELEHGMRVKAFVTDVINNANRMVQINLSRTHPELVKGLFA 150 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +EVPE+ +G V++ +V+R+ G R K+AV S+ ++ GAC+G RG RV ++ EL EK Sbjct: 151 LEVPEVADGSVEIVSVAREAGHRTKIAVRSTVKGLNAKGACIGPRGQRVSNIMQELGGEK 210 Query: 274 IDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 IDI+ +S D ATFV NAL P+ V V V D ++ +VP QLSLAIGR GQN RLA+ Sbjct: 211 IDIIDYSDDPATFVGNALSPSKVVSVKVTDPEMQIARAVVPDYQLSLAIGREGQNARLAA 270 Query: 333 QLTGWTIDIITE 344 +LTGW IDI +E Sbjct: 271 RLTGWKIDIRSE 282 >gi|152993777|ref|YP_001359498.1| transcription elongation factor NusA [Sulfurovum sp. NBC37-1] gi|151425638|dbj|BAF73141.1| transcription termination factor NusA [Sulfurovum sp. NBC37-1] Length = 387 Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 197/353 (55%), Gaps = 20/353 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I DA+A+EK+I R+ L +++ A+ L S+ V I+ +T S+ +++ Sbjct: 3 KILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVIT 62 Query: 68 VV----------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 +V +E+ + L A++ D S++IG +++ D+GR A Sbjct: 63 IVADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTAS 122 Query: 112 QSA-KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDE 169 + +++ R E+D + ++++KVG ++ GTV R++ N V++G G++ Sbjct: 123 ANLFRELEYHIQRRIEQDL-FEKYREKVGTVMLGTVNRIDADDNTHVEIGELKGILTLRN 181 Query: 170 TISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 I E + GD +++ + V + Q G + L+RT P+F+ L EVPEI +G+V++ Sbjct: 182 RIKGEKFKRGDTIRALLRYVSVDPQYGLFLELTRTSPKFLEALMASEVPEIADGVVEIVN 241 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 +R PG RAK+A+ + ++DP+GA VG++G R+ AV EL E ID + +SP F+ Sbjct: 242 AARIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFIT 301 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AL PAI + +D+D + V + +Q + AIG+ G N+RLAS LTG+TI++ Sbjct: 302 RALSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIEL 354 >gi|87042917|gb|ABD16468.1| NusA [Paulownia witches'-broom phytoplasma] Length = 319 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 174/301 (57%), Gaps = 10/301 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++E+ + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 19 KIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDP 78 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y FK + G++IS + + ++ N+ ++ Sbjct: 79 KDFNLYAVKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEI 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI Sbjct: 138 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ L+DEK+D+ VWS Sbjct: 198 GIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKDEKVDLFVWSD 257 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W ID Sbjct: 258 DPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNID 317 Query: 341 I 341 I Sbjct: 318 I 318 >gi|332707468|ref|ZP_08427516.1| NusA antitermination factor [Lyngbya majuscula 3L] gi|332353765|gb|EGJ33257.1| NusA antitermination factor [Lyngbya majuscula 3L] Length = 369 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 20/285 (7%) Query: 63 FRLLE---VVEEVENYTCQISLKVARDRDPSIDIG-GVVSDPLPPM-DFGRVAVQSAKQV 117 FR+L +VEEV+N QISLK ++ +G VV D P +FGR+A KQV Sbjct: 73 FRVLSTKTIVEEVQNSDHQISLKEVQEVASEAQLGDSVVLDVTPDQGEFGRMAAIQTKQV 132 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IRRDETI 171 + QK+R+ +R EF+D G ++ R E +VI+ L + G + + E + Sbjct: 133 LSQKLRDQQRKLIKEEFQDLEGTVLQSRSLRFEQQSVIMALSSGFGRPEVEAELPKREQL 192 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K Y+ VR RGPQ+++SR +V LF EVPEI + +V++ AV+ Sbjct: 193 PNDNYRINSTFKVYLKKVREGPHRGPQLVVSRAAAGLVVDLFSNEVPEIDDEVVRIVAVA 252 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 253 REANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPDP 312 Query: 284 ATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQN 327 +T++ NAL PA V +V+L + + + V+V ++QLSLAIG+ GQN Sbjct: 313 STYIANALSPAQVDQVLLVNPEERQAHVLVAEDQLSLAIGKEGQN 357 >gi|255323481|ref|ZP_05364612.1| transcription termination factor NusA [Campylobacter showae RM3277] gi|255299518|gb|EET78804.1| transcription termination factor NusA [Campylobacter showae RM3277] Length = 366 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 189/337 (56%), Gaps = 8/337 (2%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + VVE+ Sbjct: 7 IIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDNATKTLHLYQKITVVED 66 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+ +S+ A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 67 GDERLAEDNEHFLSISEAKKVDSGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQRLM 126 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ++ + +++D VG ++ G+V RV+ N +++ V+ R I E +PGD VK+ Sbjct: 127 EEKIFQKYQDMVGHMVFGSVTRVDSDENTFIEIDELRAVMPRKNRIKGEKFKPGDVVKAV 186 Query: 186 IYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V ++ G +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+ ++ Sbjct: 187 IKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVALVAT 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V + ED Sbjct: 247 SPNVDPVGATVGTKGVRINAVTKELNGENIDAIEYSAEPAILITRAMAPAIISSVKIGED 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +V EQ S AIG+ G N+RLAS LTG I++ Sbjct: 307 NKAVVSLVT-EQKSKAIGKSGINIRLASMLTGHEIEL 342 >gi|118475774|ref|YP_892520.1| transcription elongation factor NusA [Campylobacter fetus subsp. fetus 82-40] gi|118415000|gb|ABK83420.1| transcription termination factor NusA [Campylobacter fetus subsp. fetus 82-40] Length = 365 Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 188/333 (56%), Gaps = 7/333 (2%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK ++ + V + + AA+ LYG + ++P T I L++ + VVE+ Sbjct: 7 IIESIANEKGLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKILVVED 66 Query: 72 VENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + + ISLK A + D +++IG ++ L + GR + I ++ + Sbjct: 67 SDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGAGVLSREIEYHIQRLIEE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++ K+ ++ GTV RV+ N V++ V+ I E + G+ VK+ I Sbjct: 127 KIYEKYNSKINTLVFGTVTRVDAEENTFVEIDEIRAVMSMKNRIKNEKFKVGNVVKAVIK 186 Query: 188 DVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 VR +++ G +V LSRT P+F+ L EVPEI +G V ++ +R PG +AK+A+FS+ Sbjct: 187 SVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVIIQNSARIPGKKAKIALFSTTP 246 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +ID VGA VG++G R+ AV +EL E ID + +S + A FV AL PAIV+ V +D D Sbjct: 247 NIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIFVARALAPAIVSSVKID-DKK 305 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 I +VP EQ S AIG G N+RLAS L+G+ I Sbjct: 306 AIVSLVP-EQKSKAIGVSGINIRLASMLSGFEI 337 >gi|254373566|ref|ZP_04989053.1| hypothetical protein FTCG_01522 [Francisella tularensis subsp. novicida GA99-3549] gi|151571291|gb|EDN36945.1| hypothetical protein FTCG_01522 [Francisella novicida GA99-3549] Length = 344 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 157/251 (62%), Gaps = 13/251 (5%) Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 + + V R+PG R+K+ V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D Sbjct: 81 INIVNVVREPGFRSKVTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDM 140 Query: 284 ATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + IN+L P A + +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+ Sbjct: 141 VQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKIN 200 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 ++++ E +Q E+ F++A+++D A +L+ EG +E+LA + +E+ IEG Sbjct: 201 VLSDAEQE-EKQMSIVEK---FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEG 256 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460 FDEE E+Q RA+ + L + + +++L + G+ + L +N I TME Sbjct: 257 FDEEIVDELQERAKA------VILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTME 310 Query: 461 DLAGCSVDDLL 471 DLA SVD+LL Sbjct: 311 DLAELSVDELL 321 >gi|223040803|ref|ZP_03611069.1| transcription termination factor NusA [Campylobacter rectus RM3267] gi|222877902|gb|EEF13017.1| transcription termination factor NusA [Campylobacter rectus RM3267] Length = 366 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 108/338 (31%), Positives = 191/338 (56%), Gaps = 10/338 (2%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + VVE+ Sbjct: 7 IIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDSSTKSLHLYQKITVVED 66 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+ + + A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 67 GDERLAEDNEHFLGVSEAKKVDAGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQRLM 126 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ++ + ++++ +G+++ G+V RV+ N +++ V+ R I E +PGD VK+ Sbjct: 127 EEKIFQKYQEMIGQMVFGSVTRVDSEENTFIEIDELRAVMSRKNRIKGEKFKPGDVVKAV 186 Query: 186 IYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V ++ G +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+ ++ Sbjct: 187 IKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVALVAT 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V + DE Sbjct: 247 SPNVDPVGATVGTKGVRINAVTNELSGENIDAIEYSAEPAILITRAMSPAIISSVKITDE 306 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 307 N--KAVVSLASEQKSKAIGKSGINIRLASMLTGYEIEL 342 >gi|268679068|ref|YP_003303499.1| transcription termination factor NusA [Sulfurospirillum deleyianum DSM 6946] gi|268617099|gb|ACZ11464.1| transcription termination factor NusA [Sulfurospirillum deleyianum DSM 6946] Length = 374 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 197/345 (57%), Gaps = 15/345 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I +++A+EK +D + V + + ++ K A+ +YG + EI+ T + L++ + Sbjct: 3 KIVDIIESIAHEKGLDINEVRNTVTMALVKTAKKIYGAEYEYGAEIDSATKTLKLYQKVI 62 Query: 68 VV--------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 VV + EN+ I++K A++ DP I+IG ++ LP + GR A + ++ + Sbjct: 63 VVSPDDERLLDGNENF---IAIKEAKEVDPEIEIGDELTYELPLDNLGRTAAATLQRELE 119 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRP 178 ++ + +++ VG+ + G+V RV+ N +++ V+ R I E + Sbjct: 120 YHIQRLLEHNIFDKYQKMVGKTVFGSVVRVDNDENTYIEIDEIRAVLPRKNRIKGEKFKV 179 Query: 179 GDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ VKS I V ++ +G V LSRT P+F+ L +EVPEI +G++++ +R PG RA Sbjct: 180 GNVVKSVIRKVLIDKAQGMYVELSRTSPKFLESLLELEVPEIKDGLIKIMGSARIPGERA 239 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+++ S +ID VGA VG +G+R+ AV EL +E ID + +S F+ AL PAI++ Sbjct: 240 KISLVSFHPNIDAVGATVGTKGARINAVSKELHNENIDCIEFSSVPEIFISRALSPAIIS 299 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V + + + V +P +Q S AIG+ G N+RL S LTG+ I+++ Sbjct: 300 NVKIQNN--KAIVTLPSDQKSKAIGKNGINIRLTSMLTGFEIELV 342 >gi|87042911|gb|ABD16465.1| NusA [Blueberry stunt phytoplasma] Length = 319 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 173/301 (57%), Gaps = 10/301 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++++ + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 19 KIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAKQIKPHAKIGQVIDIKVDP 78 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y FK + G++IS + + ++ N+ ++ Sbjct: 79 KDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEI 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI Sbjct: 138 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ + S D+ +D +G+CVG R +R++ V+ L+ EK+D+ VWS Sbjct: 198 GIVKIAGVARISGERTKIGLLSCDAQVDAIGSCVGERSNRIKNVIKILKGEKVDLFVWSE 257 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W ID Sbjct: 258 DPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNID 317 Query: 341 I 341 I Sbjct: 318 I 318 >gi|87042915|gb|ABD16467.1| NusA [Tomato big bud phytoplasma] Length = 319 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 172/301 (57%), Gaps = 10/301 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++ + + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 19 KIHLKEDKSEIILYKQFLVADEATISTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDP 78 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y FK + G++IS + + ++ N+ ++ Sbjct: 79 KDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEI 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +V++ + P++ +S H +VK+ +PEI Sbjct: 138 TTLLPKKEIASNNEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ +FS D+ ID +G+C+G R +R++ V+ L+ EKID+ +WS Sbjct: 198 GIVKIAGVARISGERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIKILKGEKIDLFIWSD 257 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+N +LA ++T W ID Sbjct: 258 DPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGKNAKLAVEVTKWNID 317 Query: 341 I 341 I Sbjct: 318 I 318 >gi|87042913|gb|ABD16466.1| NusA [Maize bushy stunt phytoplasma] Length = 319 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 174/301 (57%), Gaps = 10/301 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++++ + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 19 KIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDP 78 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y F+ + G++IS + + ++ N+ ++ Sbjct: 79 KDFNLYAVKELKNQFNEELTKKKRENIYNFFEQQEGKLISAKIISENDKFYNLELE-KEI 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI Sbjct: 138 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ ++R G R K+ + S D+ +D +G+C+G R +R++ ++ L+DEK+D+ VWS Sbjct: 198 GIVKIAGIARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNIIKILKDEKVDLFVWSD 257 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W ID Sbjct: 258 DPQELISNALKPASCIQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNID 317 Query: 341 I 341 I Sbjct: 318 I 318 >gi|166012287|gb|ABY77760.1| transcription factor NusA [Paulownia witches'-broom phytoplasma] Length = 315 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 172/299 (57%), Gaps = 10/299 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++E+ + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 18 KIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDP 77 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF A++ K +++ + +R+ Y FK + G++IS + + ++ N+ ++ Sbjct: 78 KDFNLYAIKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEI 136 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI Sbjct: 137 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 196 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ L+DEK+D+ VWS Sbjct: 197 GIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKDEKVDLFVWSD 256 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W I Sbjct: 257 DPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNI 315 >gi|87042921|gb|ABD16470.1| NusA [Tomato yellows phytoplasma] Length = 319 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 173/301 (57%), Gaps = 10/301 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++++ + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 19 KIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDP 78 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y FK + G++IS + + ++ N+ ++ Sbjct: 79 KDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEI 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI Sbjct: 138 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS Sbjct: 198 GIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSD 257 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W ID Sbjct: 258 DPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNID 317 Query: 341 I 341 I Sbjct: 318 I 318 >gi|76496360|gb|ABA43691.1| NusA [Acholeplasma palmae] Length = 363 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/353 (31%), Positives = 183/353 (51%), Gaps = 20/353 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + +AVA E+ +++D VL + + +G S RVEI + +I L++ Sbjct: 5 DFFNTIEAVADERGLNKDQVLEAFEKGLIAGCKKAHGVRS-CRVEIKEDKSEILLYKQYY 63 Query: 68 VVEE------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 V++E + YT I+++ A++ + G ++ + P DF A++ K Sbjct: 64 VLDEDTLEEDMTSNPLNKEYTF-ITVEDAKEMKTRVKPGQLIEIKVDPKDFNLYAIKDFK 122 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRE 174 +++ +++ Y FK E+++ V V+ ++L ++ + E + + Sbjct: 123 NRFNEELTNKQKETIYNHFKAVEHEMVTARVTDVDDNYYKLELEKEMTTLLPKKEALPND 182 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 DR+K YI +V+ + P+V +SR + +L VPEI GI+ + +SRD G Sbjct: 183 VFHVNDRIKVYITEVQSTTKWPKVFVSRVQNGLITRLLEELVPEIKEGIISIMGISRDAG 242 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+ V S D +DP+GACVG G R++ +V + EKID+ WS + + NAL+PA Sbjct: 243 DRSKIGVRSEDPKVDPIGACVGEGGQRIREIVKAISGEKIDLFRWSDNEQELIANALQPA 302 Query: 295 ---IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 VTKV E IVP +QLSLAIG+ GQNV+LA Q +GW+IDI +E Sbjct: 303 KVVAVTKVNPKEKSAL--AIVPDDQLSLAIGKLGQNVKLAVQASGWSIDIKSE 353 >gi|87042919|gb|ABD16469.1| NusA [Strawberry phytoplasma FL4] Length = 319 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 172/301 (57%), Gaps = 10/301 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++++ + ++ L++ V +E T I+L+ A+ P G V+ + P Sbjct: 19 KIQLKEDKSEMILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKTGQVIDIKVDP 78 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y FK + G++IS + + ++ N+ ++ Sbjct: 79 KDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELE-KEI 137 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H ++K+ +PEI Sbjct: 138 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVIKVLEENIPEIQE 197 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS Sbjct: 198 GIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSN 257 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W ID Sbjct: 258 DPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNID 317 Query: 341 I 341 I Sbjct: 318 I 318 >gi|82407871|pdb|2ASB|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407889|pdb|2ATW|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407891|pdb|2ATW|C Chain C, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex Length = 251 Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 140/218 (64%), Gaps = 9/218 (4%) Query: 133 EFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKS 184 EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Sbjct: 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRC 61 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 62 YVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSN 121 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D+ Sbjct: 122 VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQ 181 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 182 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 219 >gi|254700793|ref|ZP_05162621.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] Length = 181 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/162 (50%), Positives = 114/162 (70%) Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ER+ FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREY Sbjct: 2 ERSNLFMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREY 61 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 LE I+ + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E Sbjct: 62 LERIEAEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRER 121 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K G+ G L+ + E M++ AR K GWI +E++A Sbjct: 122 KDGDTINHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 163 >gi|322379095|ref|ZP_08053497.1| transcription elongation factor NusA [Helicobacter suis HS1] gi|322381039|ref|ZP_08055069.1| transcription elongation factor NusA [Helicobacter suis HS5] gi|321146533|gb|EFX41403.1| transcription elongation factor NusA [Helicobacter suis HS5] gi|321148467|gb|EFX42965.1| transcription elongation factor NusA [Helicobacter suis HS1] Length = 384 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 107/342 (31%), Positives = 188/342 (54%), Gaps = 10/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + + + V+ +SI K A+S T ++ I+ D++L ++E Sbjct: 13 KILDIVELIAYEKGLSLETIKDVVKNSILKVAQSCLDTEANFV--IDDSNKDLALLHVVE 70 Query: 68 VVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + + Q +SLK A DPS+ ++ + D R AV + + + + Sbjct: 71 VCADGDPKLEQDPKNTLSLKEAHKSDPSLKPNDLLHYEISLKDMKRGAVNTLFKDLEYNI 130 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + D+ + ++K + I++G V ++ N +++ ++ I E+ + G+ Sbjct: 131 QRSLEDQYFQKYKSMLNTIVTGVVLDIDANQNTYIEIDGLQAILALKNRIKGESFKVGNS 190 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + +VR ++G + LSRT P+F+ L +EVPEI + ++V ++R PG RAKLA+ Sbjct: 191 VRAILKNVRFSKQGLVLELSRTTPKFLEALLRLEVPEIADEEIEVMGIARIPGDRAKLAL 250 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S +S IDP+GA VG++G R+ A+ EL +E ID V ++ ++ N L PA ++ L Sbjct: 251 RSHNSQIDPIGATVGVKGVRINAISKELCNESIDCVHYNDIPEIYIANTLSPAQTIRIKL 310 Query: 302 DEDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E+ G R V + +Q S AIG+ G NVRLA LTG+ ID Sbjct: 311 SEEQGEKRALVTLYGDQKSKAIGKNGVNVRLACMLTGYNIDF 352 >gi|26553563|ref|NP_757497.1| transcription elongation factor NusA [Mycoplasma penetrans HF-2] gi|26453569|dbj|BAC43901.1| N-utilization substance protein A [Mycoplasma penetrans HF-2] Length = 597 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 108/346 (31%), Positives = 190/346 (54%), Gaps = 10/346 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D +A EK ++ +++++ +++K+ + DI V ++ I LF V Sbjct: 6 FLENLDKIAKEKDTSKENIVNILKTALEKSYLKENPDL-DIEVVVDLNKESIKLFEKRVV 64 Query: 69 VEEVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ E+ +I++ A++ S +G VS + F R Q++ + + Sbjct: 65 VDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLNDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + Y E+KDKVG II V++V+ V V+LG++ GV+ R E I E L+PG Sbjct: 125 SNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLGSTKGVVLRSEQIPGEELQPGQSYLFL 184 Query: 186 IYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V+ +Q +G ++LSR + L E+ EI +GI+++K +SR G + K+A+ S Sbjct: 185 IKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAILSR 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 +D VG VG +G R++ + + L +E+ID++++ D F++NA P + V + D Sbjct: 245 VPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEITDD 304 Query: 303 EDVGR---IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 ED+ + ++ P+E L IG+ G NVRL S+LTGW+IDII+E+ Sbjct: 305 EDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIISEK 350 >gi|197294650|ref|YP_001799191.1| transcription elongation factor NusA [Candidatus Phytoplasma australiense] gi|171853977|emb|CAM11940.1| Transcription elongation factor [Candidatus Phytoplasma australiense] Length = 357 Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 176/343 (51%), Gaps = 9/343 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + D ++ E+ + ++ V+ + + + RV + ++ L++ V Sbjct: 6 FFKFLDKISQERDLPKEEVVEAFTKGLIAGCKK-NNRVKSCRVHLKENKNEVLLYKQFIV 64 Query: 69 VEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E T ISL+ A+ +G V+ + P DF A++ K +++ Sbjct: 65 VDETNANTINLKEWTPISLEEAQKIKLHAKVGQVLEIKVNPKDFNLYAIKEFKNQFNEEL 124 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL-RPGDR 181 + +R+ Y FK + G++IS V ++L + + S NL G+R Sbjct: 125 TKRKRESVYQFFKQQEGKLISAKVISENEKFYNLELEKEIATLLLKKETSGNNLPHIGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ ++ +VR+ + P++ +S H +VK+F +PEI GIV++ ++R G R K+ + Sbjct: 185 IQVFLLEVRKTSKWPKIFVSHNHVGLVVKVFEENIPEIQEGIVKIMTIARISGERTKIGL 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D +DP+G+C+G R++ ++ L+ EKID+ WS D + NALRPA V++ Sbjct: 245 VSYDPQVDPIGSCIGENSDRIRNIIKILKGEKIDLFRWSEDEKELISNALRPAQCIDVII 304 Query: 302 DEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 D + + I+P +Q SLAIG+ G+NV+LA+++T W IDI T Sbjct: 305 KNDRNKHALAIIPDDQFSLAIGKLGKNVKLAAEVTKWNIDIKT 347 >gi|307720459|ref|YP_003891599.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294] gi|306978552|gb|ADN08587.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294] Length = 378 Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 112/360 (31%), Positives = 191/360 (53%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L IA+A+ +EK + + V+ + + + A+ + G +I+ +T +I + + + Sbjct: 3 KILDIAEAIGHEKGLQPEKVMEALKTAFVQTAKRVIGQNFAFEAQIDEDTKNIKIVQTIT 62 Query: 68 VV-------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VV ++ E ISL AR+ D +++G + D+GR A + I Sbjct: 63 VVADDDEKLQDEEVAPAYISLTEAREYDDQVELGDQLQIDHDLEDYGRTAASQLHREIEY 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPG 179 ++ D Y ++K KVG ++SG V RV+ N +++ V+ I E G Sbjct: 123 HIQRLVEDEIYNKYKSKVGTLVSGRVTRVDAQNNTYIEVDEIRAVLPMKSRIKGEIFDVG 182 Query: 180 DRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 D +K+ + V + + G Q+ LSRT P+F+ L +EVPEI G V ++ +R PG RAK Sbjct: 183 DHIKAVVRRVNMDKENGMQIELSRTSPKFLEALLELEVPEIAEGSVIIEKAARIPGERAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +A+ S+ +D VGA VG++G R+ AV EL E ID + ++ FV + PAI++ Sbjct: 243 IALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFVSRTMSPAIISH 302 Query: 299 V-VLDEDVGRIE---VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V ++ + G E + +P +Q S AIG+ G N+RLAS LTG I+++ E D++ +D Sbjct: 303 VEIVKNEEGENEKAIITLPADQKSKAIGKSGINIRLASMLTGMQIELL--ENDAVTTNED 360 >gi|157736507|ref|YP_001489190.1| transcription elongation factor NusA [Arcobacter butzleri RM4018] gi|315635666|ref|ZP_07890929.1| transcription termination factor NusA [Arcobacter butzleri JV22] gi|157698361|gb|ABV66521.1| transcription termination factor NusA [Arcobacter butzleri RM4018] gi|315479963|gb|EFU70633.1| transcription termination factor NusA [Arcobacter butzleri JV22] Length = 391 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 199/363 (54%), Gaps = 34/363 (9%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I D++AYEK + D V + + +++ K A+ + T I+ + LF+ +E Sbjct: 3 KIIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIE 62 Query: 68 VVEE------------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV 109 VV + ENY ISL+ A++ + +DIG +S L + GR Sbjct: 63 VVSKDDDRLKEGSLTKEGTPINPENY---ISLEEAKEINSDLDIGDFMSYELEFENMGRN 119 Query: 110 AVQ---SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVI 165 A S + +Q+ E +Y K+KVG+ +SGTV R++ N +++G G++ Sbjct: 120 AATILLSNFEFRLQRFVEENIVGKY---KEKVGKTVSGTVTRIDKSDNTYIEIGEIKGIL 176 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +R I E + GD VK+ + V ++ G V +SRT P+F+ L +EVPE+ + + Sbjct: 177 QRKSRIKGEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKI 236 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++A +R PG+R+K+A+ + D+ IDP+GA VG++G R+ +V +L E ID V +S Sbjct: 237 AIEASARIPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPE 296 Query: 285 TFVINALRPAIVTKVVLDED-----VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ AL PAIV V ++++ G+ V +P +Q S AIG+ G N+RLAS LT + I Sbjct: 297 IFISRALSPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDI 356 Query: 340 DII 342 ++I Sbjct: 357 ELI 359 >gi|224372321|ref|YP_002606693.1| transcription elongation factor NusA [Nautilia profundicola AmH] gi|223589774|gb|ACM93510.1| transcription termination factor NusA [Nautilia profundicola AmH] Length = 357 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/354 (33%), Positives = 185/354 (52%), Gaps = 14/354 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L + VA EK +D D V SI K A+ + G DI VE++ E G++ ++++ E Sbjct: 3 KVLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIFE 59 Query: 68 V------VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V +EE E Y L AR+ DP+ IG + L GR + ++ ++ Sbjct: 60 VRNDDVALEEPEKY---FYLDEAREFDPNAQIGDKLKVELDLGKLGRSGAMALQREFERE 116 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGD 180 + + Y + K+ I+SG V +V+ N V+L GV+ I E GD Sbjct: 117 ITRLLENEIYRKLISKLNTIVSGEVVKVDSEENTWVELEGVKGVLPMRNRIKGEKFEVGD 176 Query: 181 RVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K+ + V + RG + LSRT+P+F+ KL VPE+ +GI+++ +R PG R+K+ Sbjct: 177 VMKALLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSKV 236 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S + ++P+G +G G R+ +V EL E ID++ +SP F+ AL PAIV V Sbjct: 237 AVSSLNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKNV 296 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +DED V V +Q + AIG+ G N+ LA LT + I++ EE S + K Sbjct: 297 QVDEDKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKIELKDAEEKSKDTSK 350 >gi|242308920|ref|ZP_04808075.1| transcription elongation factor NusA [Helicobacter pullorum MIT 98-5489] gi|239524584|gb|EEQ64450.1| transcription elongation factor NusA [Helicobacter pullorum MIT 98-5489] Length = 373 Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/341 (31%), Positives = 188/341 (55%), Gaps = 9/341 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + ++YEK + + V V+ +S+ K A+ EI+ + + L++++ Sbjct: 3 KILDIIEGISYEKGLPIESVAEVVKESVIKVAKQTLDPNISYDAEIDKKNKTLHLYQVIS 62 Query: 68 VVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + +N + I L AR D I +G + L + R AV + + + K+ Sbjct: 63 VCADDDNNAKEDKEHFIPLCEARKHDSEIKVGDELRYELSLENMNRSAVNALFRELEFKI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + + ++K +VG+I+SG+V R++ GN V++ ++ + I E R G Sbjct: 123 QRLIETQLFDKYKAQVGKIVSGSVVRIDDLGNTFVEIDEVRAILPKKNRIKGEEFRIGQV 182 Query: 182 VKSYI-YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + Y +Q G + LSRT P+ + +L +EVPEI +G V++ + +R PG RAK+A Sbjct: 183 VGAILKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVSCARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + + + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV Sbjct: 243 LKTDSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSSQPEIYIARALSPALIVSVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +++ R V + EQ AIG+ G NVRLAS LTG+ I++ Sbjct: 303 VEDK--RAIVTISNEQKPKAIGKNGINVRLASMLTGYEIEL 341 >gi|169302736|gb|ACA53041.1| NusA [Wheat blue dwarf phytoplasma] Length = 317 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 171/300 (57%), Gaps = 10/300 (3%) Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPP 103 ++++ + +I L++ V +E T I+L+ A+ P IG V+ + P Sbjct: 18 KIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDP 77 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS 161 DF AV+ K +++ + +R+ Y K + G++IS + + ++ N+ ++ Sbjct: 78 KDFNLYAVKEFKNQFNEELTKKKRENIYNFSKQQEGKLISAKIISENDKFYNLELE-KEI 136 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 ++ + E S ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI Sbjct: 137 TTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQE 196 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS Sbjct: 197 GIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSD 256 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + NAL+PA +VV+ +D+ + + IVP +Q SLAIG+ G+NV+LA ++T W I+ Sbjct: 257 DPQELIANALKPASCPQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIE 316 >gi|313681423|ref|YP_004059161.1| nusa antitermination factor [Sulfuricurvum kujiense DSM 16994] gi|313154283|gb|ADR32961.1| NusA antitermination factor [Sulfuricurvum kujiense DSM 16994] Length = 377 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 184/344 (53%), Gaps = 11/344 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I +++A EK ++ D V + S + A+ + +I+ T + L +++ V Sbjct: 4 ILDIIESIANEKGLNPDRVQEAIKTSFIQTAKRIINPTFAFEADIDDRTKQVRLRQIITV 63 Query: 69 VE------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V E E + + A + D +IG + +GR A + + I + Sbjct: 64 VADDAPELEGEEAGAYMGITAALEIDDEAEIGDQLQMEHDIESYGRSAFATLHREIEFHI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + Y ++K K+ +I+SG V RV+ N +++ V+ I E + GD Sbjct: 124 QRLVENELYDKYKSKINQIVSGRVTRVDSDQNTTIEIDEIRAVLPMKSRIKGEKFKVGDV 183 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + V ++ G + LSRT P+F+ +L +EVPEI +GIV ++ +R PG RAK+A Sbjct: 184 VSAIVRRVHVDKSNGISMELSRTAPKFLEELLALEVPEIKDGIVVIEKCARIPGERAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 ++++ IDP+GA VG+RG R+ AV EL E ID V +S F+ A+ PAI++ VV Sbjct: 244 LYTNRPQIDPIGATVGVRGVRINAVSEELCGENIDCVEYSSSPELFISRAMSPAIISAVV 303 Query: 301 LDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + E+ G + V +P +Q S AIG+ G N+RLAS LTG+TI++ Sbjct: 304 VTENEGEEKKAVVTLPSDQKSKAIGKSGINIRLASMLTGYTIEL 347 >gi|319955949|ref|YP_004167212.1| nusa antitermination factor [Nitratifractor salsuginis DSM 16511] gi|319418353|gb|ADV45463.1| NusA antitermination factor [Nitratifractor salsuginis DSM 16511] Length = 375 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 194/348 (55%), Gaps = 18/348 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I +++A+EK++ + L +++ A+ L G + VEI+ +T ++++L Sbjct: 3 KILSIIESMAHEKNLSVESALEAFKEALINTAKRLEGEEGEYEVEIDHDTQSYHIYKVLT 62 Query: 68 VV--------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 VV EE E Y I++ A+ D I+ G + + ++GR A + Q + Sbjct: 63 VVNNDDPRAQEEPEKY---ITVDEAKSYDEEIEPGDKIRSEIHLEEYGRTAAANLFQELE 119 Query: 120 QKV-REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 + R E+D + ++K KVG II GTV RV+ GN V++G G++ + I E+ + Sbjct: 120 YHIQRRIEQDL-FDKYKAKVGSIIIGTVSRVDDAGNTYVEIGELKGILSQRNRIKGESFK 178 Query: 178 PGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 GD +K+ + V + + G + L+RT P+F+ +L EVPEI +G V++ + +R PG R Sbjct: 179 TGDTLKALLRFVSIDPKYGMHLELTRTAPKFLEELMKREVPEIQDGAVEIISSARIPGER 238 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+A+ S IDP+GA VG RG R+ AV EL E ID + +SP +V AL PAIV Sbjct: 239 AKVALKSDRPDIDPIGAAVGQRGVRINAVSEELCGENIDCIEYSPIPEIYVTRALSPAIV 298 Query: 297 TKV-VLDEDVGRIEVIV--PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + + + + IV +Q + AIG+ G N+RLAS LT + I++ Sbjct: 299 QNVRIENNNTAEQKAIVDITSDQKAKAIGKSGINIRLASMLTKYQIEL 346 >gi|291276369|ref|YP_003516141.1| transcription termination factor [Helicobacter mustelae 12198] gi|290963563|emb|CBG39395.1| transcription termination factor [Helicobacter mustelae 12198] Length = 369 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/335 (31%), Positives = 181/335 (54%), Gaps = 6/335 (1%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + +AYEK I D+VL ++ + I K A+ VE +P+ + L L V Sbjct: 1 MDIIEIIAYEKGIPYDMVLDIVKNLIIKTAKQEINEEIQYSVEESPKEKTLKLIHNLTVC 60 Query: 70 ----EEVENYTCQ-ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E+ EN I+LK A++ D S+ IG ++ L + R V Q + +++ Sbjct: 61 SDEDEKAENDKHHFIALKDAKNIDASLSIGDIIKSELTLENMSRGTVNKIFQDLEYQLQR 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + ++ + FK+K+G+I+SG V V+ N +++ + ++ I E + GD + Sbjct: 121 SMEEQLFKSFKEKIGKIVSGVVLEVDAQENTFIEIHDIRAILPLKNRIKGERFQNGDTIS 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V+ ++ G + LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+AVFS Sbjct: 181 AILKFVKMDKNGIYLELSRTTPKMLEELLMLEVPEIKDGEVIIQKTARIPGDRAKVAVFS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ ID +G+ VG++G R+ AV +L E ID + +S F+ AL PA + V + + Sbjct: 241 TNPKIDAIGSTVGVKGVRINAVGRQLNGENIDCIEYSDVPEIFITRALAPANIINVQIKQ 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + +V + Q S AIG+ G N+RL S LTG+ Sbjct: 301 EELIAKVKLMASQKSKAIGKNGVNIRLVSMLTGYN 335 >gi|296274352|ref|YP_003656983.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM 7299] gi|296098526|gb|ADG94476.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM 7299] Length = 391 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 114/358 (31%), Positives = 189/358 (52%), Gaps = 24/358 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I D++AYEK I + V + + +++ K + EI+ + + LF+ +E Sbjct: 3 KIIDILDSIAYEKGIKSEHVETALKEALIKTGEKMVDHTLIFDAEIDRKNKRLKLFQKIE 62 Query: 68 VV---------EEVENYTC------QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 V+ EEV+ Y I+L A++ D +DIG + L + GR A Sbjct: 63 VIKDDDKRLQGEEVDQYNNIINPENFIALSEAKEIDADLDIGDFLDYDLEFENMGRNAAT 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETI 171 +++ + ++K K+G+II+G+V RV+ N V++G G++ R I Sbjct: 123 ILHNNFEYRLQRYIEENLVSKYKSKIGKIINGSVTRVDRAENTFVEIGEVKGMLTRKSRI 182 Query: 172 SRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 E + GD +K+ + V ++ G + LSRT P+F+ L +EVPE+ + + ++A + Sbjct: 183 KGETFKVGDNLKAVVKAVTIDKTNGLIIELSRTSPKFLEALLALEVPELKDERITIEASA 242 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R PGSRAK+A+ + D IDP+G+ VG++G R+ AV +L E ID V +S FV A Sbjct: 243 RIPGSRAKIALSTMDPQIDPIGSVVGVKGVRITAVSQQLHGENIDCVEYSTIPEMFVARA 302 Query: 291 LRPAIVTKVVL------DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 L PAI+ V + DE I V + +Q S AIG+ G N+RLAS LT I+++ Sbjct: 303 LSPAIIKSVQIIKSEKYDEKDKAI-VTILSDQKSKAIGKSGLNIRLASMLTKCEIELV 359 >gi|86149201|ref|ZP_01067433.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596851|ref|ZP_01100087.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 84-25] gi|121612185|ref|YP_001000167.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005125|ref|ZP_02270883.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|218562115|ref|YP_002343894.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840559|gb|EAQ57816.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni CF93-6] gi|87250165|gb|EAQ73123.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|88190540|gb|EAQ94513.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359821|emb|CAL34608.1| transcription termination factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925727|gb|ADC28079.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni IA3902] gi|315928212|gb|EFV07529.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930003|gb|EFV09146.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 305] Length = 362 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 193/336 (57%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVAD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ GTV RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + ED Sbjct: 242 TNIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|12044993|ref|NP_072803.1| transcription elongation factor NusA [Mycoplasma genitalium G37] gi|255660291|ref|ZP_05405700.1| transcription elongation factor NusA [Mycoplasma genitalium G37] gi|1352607|sp|P47387|NUSA_MYCGE RecName: Full=Transcription elongation protein nusA gi|3844734|gb|AAC71359.1| transcription termination factor NusA [Mycoplasma genitalium G37] gi|166078938|gb|ABY79556.1| transcription termination factor NusA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 531 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 186/353 (52%), Gaps = 14/353 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL I VA K++ + V+ + ++++A + + ++ V IN + G I++ +L V Sbjct: 33 LLAIIKNVAKTKNLSIEEVVFCLKTALEQAYKK-HLNFVNVEVNINFDKGIINVEQLFNV 91 Query: 69 V-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +E E+Y +I L+ A + S+ +G V+ P+P + + + QK+ E Sbjct: 92 VSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSDLINKMIAIFNQKISET 151 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN------VIVDLGNSDGVIRRDETISRENLRPG 179 EF +VGE+I V+ ++ I++L + G I + E E L G Sbjct: 152 NFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKGYISKRELSKGERLEIG 211 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + I +++R+ + LSR+ + + L PEI NG + +K + R PG ++K+ Sbjct: 212 KKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKIERSPGVKSKI 271 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D ++DPV A +G +G +++ + E E IDIV W+ D F+INA+ PA V Sbjct: 272 AVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPAEVIGY 331 Query: 300 VLDEDVGR---IEVIVPKEQLSLAIGRRGQNVRLASQLTGW-TIDIITEEEDS 348 + +D R IEV+VP Q++ G +G N+RL S LTGW ++D+ +E++ S Sbjct: 332 NILQDDERDTSIEVVVPANQIANVFGFKGVNIRLISNLTGWNSVDVYSEKDAS 384 >gi|86151767|ref|ZP_01069981.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124006|ref|YP_004066010.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841396|gb|EAQ58644.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017728|gb|ADT65821.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 362 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 193/336 (57%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVAD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ GTV RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + ED Sbjct: 242 ANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|57237514|ref|YP_178528.1| transcription elongation factor NusA [Campylobacter jejuni RM1221] gi|205355336|ref|ZP_03222107.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8421] gi|283955882|ref|ZP_06373372.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 1336] gi|57166318|gb|AAW35097.1| transcription termination factor NusA [Campylobacter jejuni RM1221] gi|205346570|gb|EDZ33202.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8421] gi|283792542|gb|EFC31321.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 1336] gi|315057880|gb|ADT72209.1| Transcription termination protein NusA [Campylobacter jejuni subsp. jejuni S3] Length = 362 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 193/336 (57%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVAD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ GTV RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + ED Sbjct: 242 ANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|237752704|ref|ZP_04583184.1| transcription elongation factor NusA [Helicobacter winghamensis ATCC BAA-430] gi|229376193|gb|EEO26284.1| transcription elongation factor NusA [Helicobacter winghamensis ATCC BAA-430] Length = 371 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 118/366 (32%), Positives = 198/366 (54%), Gaps = 9/366 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + + V + D++ K A+ + VEI+ + + L++++ Sbjct: 3 KILDIIEGIAYEKGLPIESVTDAVKDAVIKVAKESLDSTIHYDVEIDKKNKTLHLYQVIS 62 Query: 68 VVEEVENYTCQ--ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E+ + + I L A+ D I IG + L D R AV + + + K++ Sbjct: 63 VCEDSDALDGKNMIPLSEAKKHDSEIKIGDELRYELSLEDMSRNAVNALFRELEFKIQRL 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + + ++K ++G+I+SG V R + GN +++ ++ + I E G V + Sbjct: 123 IETQLFDKYKSQIGKIVSGNVVRADSLGNTYIEIDEIRAILPKKNRIKGEEFGVGQIVGA 182 Query: 185 YIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V + Q G + LSRT P+ + +L +EVPEI +G V++ SR PG RAK+A+ + Sbjct: 183 VLKHVGIDRQNGIMIELSRTTPKMLEELLKLEVPEIKDGDVEIVNSSRIPGERAKVALKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA+V V + E Sbjct: 243 DSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSVQPEIYIARALSPALVISVAV-E 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I V + EQ AIG+ G N+RLAS LTG+ I++ +E DS +Q N TQ Sbjct: 302 DKKAI-VSITSEQKPKAIGKNGINIRLASMLTGYEIEL--KEIDSGTQQVSSNS-TQETQ 357 Query: 364 QAINVD 369 ++ N+D Sbjct: 358 KSSNID 363 >gi|157414753|ref|YP_001482009.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81116] gi|157385717|gb|ABV52032.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 81116] gi|307747392|gb|ADN90662.1| Transcription termination factor NusA [Campylobacter jejuni subsp. jejuni M1] gi|315931099|gb|EFV10073.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 327] Length = 362 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 108/336 (32%), Positives = 192/336 (57%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVAD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ GTV RV+ N +++ + R I E + GD K+ Sbjct: 123 EQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVAKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + ED Sbjct: 242 ANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|153951003|ref|YP_001398503.1| transcription elongation factor NusA [Campylobacter jejuni subsp. doylei 269.97] gi|152938449|gb|ABS43190.1| transcription termination factor NusA [Campylobacter jejuni subsp. doylei 269.97] Length = 362 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 193/336 (57%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVAD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKVEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ GTV RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + ED Sbjct: 242 ANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VNLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|86153795|ref|ZP_01071998.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842756|gb|EAQ59968.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 362 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 108/336 (32%), Positives = 193/336 (57%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVAD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ GTV RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL P+IV V + ED Sbjct: 242 ANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPSIVNSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|258615949|ref|ZP_05713719.1| transcription elongation factor NusA [Enterococcus faecium DO] Length = 222 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 134/219 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEI 222 >gi|261751302|ref|ZP_05995011.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] gi|261741055|gb|EEY28981.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] Length = 174 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 110/156 (70%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 1 MEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEA 60 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 61 EQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTI 120 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G L+ + E M++ AR K GWI +E++A Sbjct: 121 NHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELA 156 >gi|154175154|ref|YP_001408581.1| transcription elongation factor NusA [Campylobacter curvus 525.92] gi|112803976|gb|EAU01320.1| transcription termination factor NusA [Campylobacter curvus 525.92] Length = 366 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/340 (31%), Positives = 191/340 (56%), Gaps = 16/340 (4%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK + D V + ++ A+ +Y + V I+ ++ L++ + +V Sbjct: 7 IIESIANEKGLQIDDVKERVIRALINTAKRVYSENYEYDVTIDA-NKNLKLYQKILIVAN 65 Query: 70 ------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 E+ E++ ISLK A+ D +++G ++ L + GR A Q+ + + ++ Sbjct: 66 DDERLNEDNEHF---ISLKEAKKIDSGVEVGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ + ++ + VG+++ G+V RV+ N +++ ++ R I E + GD V Sbjct: 123 RLVEEKIFQKYDEMVGQMVFGSVVRVDNDENTYIEIDELRAILPRKNRIKGEKFKIGDVV 182 Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+ Sbjct: 183 KAVIRKVFTDKNLGIRVELSRTSPKFLEALLKAEVPEIKDGGIIIQNSARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ +IDPVGA VG +G R+ AV EL DE ID + ++ + A F+ A+ PAI++ V + Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHDENIDAIEYASEPAIFISRAMAPAIISSVKI 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D + + ++ EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 303 DGNKAIVSLV--GEQKSKAIGKNGINIRLASMLTGFEIEL 340 >gi|224417809|ref|ZP_03655815.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|253827150|ref|ZP_04870035.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|313141351|ref|ZP_07803544.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] gi|253510556|gb|EES89215.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|313130382|gb|EFR47999.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] Length = 370 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + ++YEK + + V+ V+ +S+ K A+ + EI+ + + L++++ Sbjct: 3 KILDIIEGISYEKGLPIESVMEVVKESVIKVAQQTLDSKILYDAEIDKKNKTLHLYQVIS 62 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V E E+ I L AR D I +G + L + R AV + + + +++ Sbjct: 63 VCSDDYEAKEDKEHFIPLSEARKHDSEIKVGDELRYELSLENMNRSAVNTLFRELEFRIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K ++G+I+SG+V R++ GN V++ ++ + I E + G + Sbjct: 123 RLIETQLFDKYKAQIGKIVSGSVVRIDDLGNTFVEIDEIRAILPKKNRIKGEEFKVGQVI 182 Query: 183 KSYI-YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + Y +Q G + LSRT P+ + +L +EVPEI +G V++ A +R PG RAK+A+ Sbjct: 183 GAVLKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVACARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + +DPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV+ Sbjct: 243 KTDSMKVDPVGATVGVKGVRINAVSKELKNESIDCIEFSNQPEIYIARALSPALIVSVVV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ AIG+ G NVRLAS LTG+ I++ Sbjct: 303 EDK--KAVVSISSEQKPKAIGKNGINVRLASMLTGYEIEL 340 >gi|157165500|ref|YP_001467013.1| transcription elongation factor NusA [Campylobacter concisus 13826] gi|112800050|gb|EAT97394.1| transcription termination factor NusA [Campylobacter concisus 13826] Length = 367 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 186/337 (55%), Gaps = 10/337 (2%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK+++ + V + ++ A+ +YG + V I+ ++ L++ + +V Sbjct: 7 IIESIANEKNLEIEDVKERVIRALINTAKRVYGENYEYDVSIDANK-NLKLYQKISIVAN 65 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+ +SLK A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 66 DDERLAEDNEHFLSLKEAKKIDSGVEIGDELTYELSLDNLGRTAAQTLHKELEYHIQRLV 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ++ ++ + G ++ G V RV+ N +++ ++ R I E + GD VK+ Sbjct: 126 EEKILQKYNEMSGHMVFGPVVRVDNDENTFIEIDELRAILPRKNRIKGEKFKVGDVVKAV 185 Query: 186 IYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+ S+ Sbjct: 186 IRKVFTDKNLGIKVELSRTSPKFLEALLTSEVPEIKDGGIIIQGSARIPGERAKVALIST 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +IDPVGA VG +G R+ AV EL E ID + ++ + A V A+ PAI+T V ++E+ Sbjct: 246 TPNIDPVGATVGTKGVRINAVSKELHGESIDAIEYTTEPAILVARAMAPAIITSVKIEEN 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 306 --KAIVTLASEQKSKAIGKNGINIRLASMLTGYEIEL 340 >gi|315452942|ref|YP_004073212.1| transcription termination factor NusA [Helicobacter felis ATCC 49179] gi|315131994|emb|CBY82622.1| transcription termination factor NusA [Helicobacter felis ATCC 49179] Length = 376 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 190/353 (53%), Gaps = 16/353 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + ++V V+ +SI K A++ ++ I+ D +L ++E Sbjct: 3 KILDIVELIAYEKGLSLEMVKEVVKNSILKVAKNTIDPQANFM--IDDSNKDFTLLHVVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + V + T ++L DPS+ ++ + D R AV + + + + Sbjct: 61 VCADDDPRLVADPTNTLALTEVLKDDPSLKPNDLLHYEISLKDMKRGAVNALFKDLEFNI 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + D+ + ++K + I+ G V ++ N V++ V+ I E+ + GD Sbjct: 121 QRSLEDQYFQKYKGMLNTIVRGVVLDIDKNQNTFVEIEGVQAVLALRNRIKGESFKVGDT 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V ++G + LSRT P+F+ L H+EVPEI + +++ ++R PG RAKLA+ Sbjct: 181 LRAILKSVHFSKQGLVLELSRTTPKFLEALLHLEVPEIADKEIEIMGIARIPGDRAKLAL 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S + IDP+GA VG++G R+ A+ EL +E ID V ++ ++ NAL PA + K+ L Sbjct: 241 RSHNVHIDPIGATVGVKGIRINAISKELCNESIDCVHYNEVPEIYIANALSPANIVKIEL 300 Query: 302 DEDV--GRIE----VIVPKEQLSLAIGRRGQNVRLASQLTGWTID--IITEEE 346 + +I+ V + +Q S AIG+ G NVRLA LTG+ ID ++ EEE Sbjct: 301 SQKTLEDKIQKNALVTLQADQKSKAIGKSGVNVRLACMLTGYEIDFNVLAEEE 353 >gi|78777942|ref|YP_394257.1| transcription elongation factor NusA [Sulfurimonas denitrificans DSM 1251] gi|78498482|gb|ABB45022.1| NusA antitermination factor [Sulfurimonas denitrificans DSM 1251] Length = 380 Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 105/348 (30%), Positives = 185/348 (53%), Gaps = 13/348 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I +A+A EK + D V + + + A+ + + IN +T I + + + Sbjct: 3 KILDIVEAIANEKGLKSDKVKEALKAAFIQTAKRIINSKFAFEAVINTQTKTIDIIQTIT 62 Query: 68 VVEEV-------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VV + E IS+ AR+ D +++ + P ++GR A + I Sbjct: 63 VVSDSDERLKDEEIAPAYISITEAREYDDQVELDDQLQIPHDLEEYGRTAASQLHREIEY 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPG 179 ++ D + ++K K+G +++G V RV+ N +++ V+ I E + G Sbjct: 123 HIQRVVEDEIFNKYKSKIGSLVNGRVTRVDNQNSTYIEIDEIRAVLPIKNRIKGEIFKVG 182 Query: 180 DRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 D +K+ + V ++ G Q+ LSRT P+F+ +L +EVPEI +G V V+ +R PG RAK Sbjct: 183 DHLKAVVRRVDMNKENGIQIELSRTSPKFLEELLALEVPEISDGTVIVERSARIPGERAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +A+FS+ +D VGA VG++G R+ AV EL E ID + ++ F+ + PAI++ Sbjct: 243 VALFSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFISRIMSPAIISN 302 Query: 299 V-VLDEDVGRIE---VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V +L ++ G + + +P +Q S AIG+ G N+RLAS L+G I+++ Sbjct: 303 VEILKDENGEAQKAIITLPTDQKSKAIGKNGINIRLASMLSGLNIELV 350 >gi|206896456|ref|YP_002247276.1| transcription termination factor NusA [Coprothermobacter proteolyticus DSM 5265] gi|206739073|gb|ACI18151.1| transcription termination factor NusA [Coprothermobacter proteolyticus DSM 5265] Length = 343 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDL 158 P + RV++Q+A+ + ++ E +++ GE+++ V R + + +D+ Sbjct: 91 FPLSNLSRVSIQTAENTLKNRMNEKSKEKAIKRIAQFSGEVVTARVIRRDPKTKLIYMDV 150 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVP 217 + V+ E + + PGD ++ + + G V LSR+ P + LF +EVP Sbjct: 151 DGVECVLEPSEQLPTDRYAPGDSLRCLVLGAKNIPMYGQGVALSRSSPDLLKLLFTLEVP 210 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 E+ +G+V++ ++R PG R+K+AV S D +DP GAC+G +G R+QA+ L +EKID+V Sbjct: 211 EVADGVVRIMGIARKPGRRSKVAVMSIDPRLDPQGACIGYKGQRIQAISRSLANEKIDVV 270 Query: 278 VWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 W D A + N L P V KV VLD R V + + + +G G+NV LA QLTG Sbjct: 271 RWDTDPAKLIANVLSPGKVDKVEVLDPKNKRALVYTTPDNIKVVVGEDGENVELAEQLTG 330 Query: 337 WTIDI 341 WTID+ Sbjct: 331 WTIDV 335 >gi|149194205|ref|ZP_01871303.1| transcription elongation factor NusA [Caminibacter mediatlanticus TB-2] gi|149136158|gb|EDM24636.1| transcription elongation factor NusA [Caminibacter mediatlanticus TB-2] Length = 356 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/341 (32%), Positives = 177/341 (51%), Gaps = 14/341 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE----- 70 VA EK +D + V SI K A+ + G DI V++ E + +++ VV Sbjct: 11 VANEKGLDFEEVKEAFKRSIIKTAKKILG---DIDVDVEMEDKKLKIYQNFTVVNDDRAL 67 Query: 71 -EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E E Y + L ARD D + IG + L GR + ++ +++ + Sbjct: 68 NEPEKY---LYLDEARDFDENAQIGDKLRAELDLSKLGRSGAMALQREFEREITRLLENE 124 Query: 130 QYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y + K+ I+SG V +V+ N V+L GV+ R I E + GD +K+ + Sbjct: 125 IYRKLISKLNTIVSGEVIKVDNDENTYVELDGVRGVLPRRNRIKGEKFKVGDVLKALLKY 184 Query: 189 VRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + ++G + LSRT P+F+ KL VPE+ +G++++ +R PG R+K+AV S + Sbjct: 185 VHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVAVSSLNPK 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+G +G G R+ A+ EL E ID++ +SP FV AL PAIV V +DE G Sbjct: 245 IDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVKIDEKNGI 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V V + + AIG+ G N+ LAS LT + I++ ++E+ + Sbjct: 305 AYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKSQEKST 345 >gi|283954248|ref|ZP_06371772.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 414] gi|283794266|gb|EFC33011.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 414] Length = 362 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/336 (31%), Positives = 191/336 (56%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK+++ + V +A ++ A+ +YG + V+ P+ +++L++ + +V Sbjct: 7 IIESIASEKNLNLENVRERVATALINTAKRIYGQEYEFFVD--PK--NLNLYQKITIVTD 62 Query: 70 --EEVENYT-CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E ++N + I+L A+ P ++IG ++ + GR AV + + + +++ Sbjct: 63 NDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ G+V RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGSVVRVDNEENTYIEIDELRAFLPRKNRIKGEKFKIGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIVGCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGA VG++G R+ AV EL +E ID + + +S + AL PAI+ V + ED Sbjct: 242 VNIDPVGATVGVKGVRINAVSKELHNENIDCIESTNESEILISRALAPAIINSVKI-EDK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 I V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 301 KAI-VSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|222823361|ref|YP_002574935.1| transcription elongation factor NusA [Campylobacter lari RM2100] gi|222538583|gb|ACM63684.1| transcription elongation factor NusA [Campylobacter lari RM2100] Length = 363 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 110/360 (30%), Positives = 193/360 (53%), Gaps = 15/360 (4%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE- 70 I +++A EK++ + V + ++ A+ +YG + V+ ++ L++ + VV Sbjct: 7 IIESIANEKNLQIEDVRERVKKALINTAKKIYGDKYEFFVD---SGKNLQLYQKIVVVSD 63 Query: 71 -----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E EN I+L AR ++IG ++ + GR AV + + +++ Sbjct: 64 DDERLESENEHF-IALSKARAEAKDVEIGDELTYECSLENLGRTAVNILHKELEYNIQKL 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++ Y +++ VG ++ G+V RV+ N V++ + R I E + GD +K+ Sbjct: 123 LEEKIYEKYQKMVGHMVFGSVVRVDSEENTYVEIDEFRAYLPRKNRIKGEKFKVGDVIKA 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V ++ G ++ LSRT P+F+ L EVPEI +G++ + A +R PG RAK+ + ++ Sbjct: 183 VIRHVYIDKSGMRMELSRTSPKFLEALLKAEVPEIKDGLINIYASARIPGERAKIILQAN 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S+D VGA VG++G R+ AV EL++E ID + +S + A + +L PAI+ V + ED Sbjct: 243 SPSVDAVGATVGIKGVRINAVSKELKNENIDCIEYSNEMAILITRSLAPAIINSVSI-ED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQKDFNERTQFF 362 I V + EQ S AIG+ G N+RLAS L G+ I++ I E+ + N+++ F F Sbjct: 302 KKAI-VTLNSEQKSKAIGKSGINIRLASMLLGYEIELNEINNEDKTNNQEEAFKNLKALF 360 >gi|254457123|ref|ZP_05070551.1| transcription termination factor NusA [Campylobacterales bacterium GD 1] gi|207085915|gb|EDZ63199.1| transcription termination factor NusA [Campylobacterales bacterium GD 1] Length = 377 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 109/366 (29%), Positives = 190/366 (51%), Gaps = 20/366 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I DA+A+EK + + VL + + + A+ + I+ T I + + + Sbjct: 3 KILDIVDAIAHEKGLQPEKVLEALKTAFVQTAKRVIDRNFAFEASIDESTKSIEIVQTIT 62 Query: 68 VV-------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 V+ ++ E IS+ AR+ D +++ + P ++GR + I Sbjct: 63 VLADDDQRLQDEEVAPAYISITDAREYDDQVELEDQLQVPHDLEEYGRTGASQLHREIEY 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179 ++ D + ++K K+G +++G V V+ N +++ ++ I E + G Sbjct: 123 HIQRLVEDELFNKYKSKIGSLVTGRVTSVDSHNATYIEVDEVRAILPMKSRIKGEVFKKG 182 Query: 180 DRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 D +K+ + V + + G Q+ LSRT P+F+ +L +EVPEI +G+V V+ +R PG RAK Sbjct: 183 DHLKAVVRRVNLDKENGIQIELSRTSPKFLEELLALEVPEIADGVVIVERSARIPGERAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +A+ S+ +D VGA VG++G R+ AV EL E ID V ++ F+ + PAI++ Sbjct: 243 IALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCVEYTTIPELFISRVMSPAIISH 302 Query: 299 V--VLDEDVGRIE---VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-----ITEEEDS 348 V + +ED G E + +P +Q S AIG+ G N+RLAS LTG I++ +T E+ Sbjct: 303 VEIIRNED-GEAEKAIITLPADQKSKAIGKSGINIRLASMLTGLNIELVENNTVTTEDGE 361 Query: 349 INRQKD 354 I KD Sbjct: 362 IEEAKD 367 >gi|154148222|ref|YP_001406096.1| transcription elongation factor NusA [Campylobacter hominis ATCC BAA-381] gi|153804231|gb|ABS51238.1| transcription termination factor NusA [Campylobacter hominis ATCC BAA-381] Length = 366 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 183/359 (50%), Gaps = 10/359 (2%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-- 69 I +++A EK ++ V + + + A+ ++G +I+P + I LF+ + VV Sbjct: 7 IIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKVSVVAN 66 Query: 70 ----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++ N I+L A+ DP+I+IG +S + GR A Q + ++ Sbjct: 67 DFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNYHIQRL 126 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++ + +K+GE++ G+V V+ V++ + + I E GD + + Sbjct: 127 LEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVGDIINA 186 Query: 185 YIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I V ++ +G ++ LSRT P+F+ L EVPEI +G V +KA +R PG RAK+A+ + Sbjct: 187 VIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAKIALSA 246 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +IDPVGA VG +G R+ AV EL+ E ID++ WS V A+ PAI V + E Sbjct: 247 ISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANSVKISE 306 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D + V + Q S AIG+ G N+RLAS LTG I+++ E ++ + F Sbjct: 307 D--KAIVYINPAQKSKAIGKSGLNIRLASMLTGLQIELVETGESKKTNEEAMQDLKNLF 363 >gi|57168596|ref|ZP_00367729.1| transcription termination factor NusA [Campylobacter coli RM2228] gi|305433015|ref|ZP_07402171.1| transcription termination factor NusA [Campylobacter coli JV20] gi|57020101|gb|EAL56778.1| transcription termination factor NusA [Campylobacter coli RM2228] gi|304443716|gb|EFM36373.1| transcription termination factor NusA [Campylobacter coli JV20] Length = 362 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 183/336 (54%), Gaps = 13/336 (3%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK++D + V + ++ A+ +YG D V+ +++L++ + VV + Sbjct: 7 IIESIANEKNLDIESVKEKVIIALINTAKRIYGQEYDFFVD----RKNLNLYQKITVVAD 62 Query: 72 V-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EN I A+ P ++IG ++ + GR AV + + +++ Sbjct: 63 NDERLNENKESYIEFSKAKKEAPDVEIGDELTYECSLENLGRTAVNILHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ G V R++ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFEKYKNKVGQMVFGNVVRIDNEENTYIEIDELRAFLPRKNRIKGEKFKVGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKMELSRTSPKFLECLLEAEVPEIKDGYVSVVKCARIPGERAKIILQANG 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++IDPVGA VG++G R+ AV EL +E ID + +S + + AL PAIV+ V ++ + Sbjct: 242 ANIDPVGATVGVKGVRINAVSKELHNENIDCIEFSNEPEILIARALAPAIVSSVKIENE- 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + EQ S AIG+ G N+RLA L+G+ I++ Sbjct: 301 -KAIVTLNSEQKSKAIGKSGINIRLAGMLSGYEIEL 335 >gi|13507893|ref|NP_109842.1| transcription elongation factor NusA [Mycoplasma pneumoniae M129] gi|2499338|sp|P75591|NUSA_MYCPN RecName: Full=Transcription elongation protein nusA gi|1674384|gb|AAB96325.1| N-utilization substance protein A-like protein [Mycoplasma pneumoniae M129] Length = 540 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/352 (29%), Positives = 188/352 (53%), Gaps = 16/352 (4%) Query: 9 LLQIADAVAYEKSID-RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 LLQ+ VA K++ DVVL + Q + L ++ ++ N G + + +L + Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLNYVNVEVNIDFN--KGLMQIEQLFD 69 Query: 68 VVEEV-ENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV++ E+Y ++ L A+ +P++++GGV+ P+ D + + QK+ E Sbjct: 70 VVDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQKINE 129 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGN------VIVDLGNSDGVIRRDETISRENLRP 178 +F ++VG++I V+ ++ IV+L + G + + E E L Sbjct: 130 TAFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNLETTKGYMPKRELSKGEKLDI 189 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G + I +++++ + LSR+ + + L + PEI NG +++K + R PG+++K Sbjct: 190 GKKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPGTKSK 249 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IVT 297 +AV S D +DP+ A +G +G R++ + E E IDIV+W+ D F++NA+ PA +V Sbjct: 250 VAVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVG 309 Query: 298 KVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW-TIDIITEEE 346 +L DE IE++VP Q++ G +G N+RL S LTGW ++D+ TE++ Sbjct: 310 YNILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKD 361 >gi|148925839|ref|ZP_01809526.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8486] gi|145844825|gb|EDK21929.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8486] Length = 300 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/264 (35%), Positives = 153/264 (57%), Gaps = 4/264 (1%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I+L A+ P ++IG ++ + GR AV + + + +++ + ++K+KV Sbjct: 13 IALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLLEQTIFEKYKNKV 72 Query: 139 GEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+++ GTV RV+ N +++ + R I E + GD VK+ I V + +G + Sbjct: 73 GQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAVIRRVYTD-KGIK 131 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ ++IDPVGA VG+ Sbjct: 132 IELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANGANIDPVGATVGV 191 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +G R+ AV EL +E ID + ++ +S + AL PAIV V + ED I V + EQ Sbjct: 192 KGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI-EDKKAI-VSLNSEQK 249 Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341 S AIG+ G N+RLAS L+G+ I++ Sbjct: 250 SKAIGKNGINIRLASMLSGYEIEL 273 >gi|315638400|ref|ZP_07893578.1| transcription termination factor NusA [Campylobacter upsaliensis JV21] gi|315481528|gb|EFU72154.1| transcription termination factor NusA [Campylobacter upsaliensis JV21] Length = 358 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/357 (29%), Positives = 192/357 (53%), Gaps = 20/357 (5%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK+++ + V + ++ A+ +YG + V+ +SL++ + +V + Sbjct: 7 IIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFVD----KKTLSLYQKILIVAD 62 Query: 72 V-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EN I++ A+ ++IG ++ + GR AV + + + +++ Sbjct: 63 DDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ G+V RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G+V V +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKMELSRTSPKFLECLLEAEVPEIKDGLVSVVKCARIPGERAKIILQANS 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V +++ Sbjct: 242 SNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKIEDKT 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-------ITEEEDSINRQKDF 355 + + EQ S AIG+ G N+RL S L+G+ I++ I+ EE N Q F Sbjct: 302 AIVS--LNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDLF 356 >gi|57242307|ref|ZP_00370246.1| transcription termination factor NusA [Campylobacter upsaliensis RM3195] gi|57016987|gb|EAL53769.1| transcription termination factor NusA [Campylobacter upsaliensis RM3195] Length = 358 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/357 (29%), Positives = 191/357 (53%), Gaps = 20/357 (5%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I +++A EK+++ + V + ++ A+ +YG + V+ +SL++ + +V + Sbjct: 7 IIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFVD----KKTLSLYQKILIVAD 62 Query: 72 V-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EN I++ A+ ++IG ++ + GR AV + + + +++ Sbjct: 63 DDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLL 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + ++K+KVG+++ G+V RV+ N +++ + R I E + GD VK+ Sbjct: 123 EQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDVVKAV 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ + ++ Sbjct: 183 IRRVYTD-KGIKMELSRTSPKFLECLLEAEVPEIKDGFVSVVKCARIPGERAKIILQANS 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V +++ Sbjct: 242 SNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKIEDKT 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-------ITEEEDSINRQKDF 355 + + EQ S AIG+ G N+RL S L+G+ I++ I+ EE N Q F Sbjct: 302 AIVS--LNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDLF 356 >gi|34558085|ref|NP_907900.1| transcription elongation factor NusA [Wolinella succinogenes DSM 1740] gi|34483803|emb|CAE10800.1| TRANSCRIPTION ELONGATION FACTOR [Wolinella succinogenes] Length = 375 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 188/342 (54%), Gaps = 9/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + D V + ++I A+ VEI+ + + L++ + Sbjct: 3 KILDIIELIAYEKGLKIDSVAGAVKEAIIITAKKSLDEHIAYDVEIDKKNKTLKLYQKIL 62 Query: 68 VVEEVENYTC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + IS+ A++ D +++G + L + R AV + + + + Sbjct: 63 VCPPGDERLSSDPDNHISITEAKEMDEEVEVGDELRYELSLENMSRSAVNTLYKELEFHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + + ++K +VG+I+SG+V RV+ GN V++ + + I E+ + G+ Sbjct: 123 QRLIETQLFEKYKSQVGKIVSGSVVRVDDEGNTFVEIDEIRAFLPKKNRIKGESFKVGNV 182 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + V +++ G Q+ LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+A Sbjct: 183 VGAILKHVSIDRKNGIQIELSRTTPKLLEELLRLEVPEIKDGDVTIEKCARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + SS ID VGA VG++G R+ AV EL++E ID + +SP FV +L PA+++ V Sbjct: 243 ISSSSPKIDAVGATVGVKGVRINAVGKELKNENIDCIEYSPIPEMFVARSLSPALISSVK 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +D + V +P EQ AIG+ G N+RLAS LTG+ I++I Sbjct: 303 IDGT--KAIVTLPSEQKPKAIGKNGINIRLASMLTGYEIELI 342 >gi|256370754|ref|YP_003108579.1| transcription elongation factor NusA [Candidatus Sulcia muelleri SMDSEM] gi|256009546|gb|ACU52906.1| transcription elongation factor NusA [Candidatus Sulcia muelleri SMDSEM] Length = 342 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 173/319 (54%), Gaps = 3/319 (0%) Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQISLKVAR 85 +S++ S + YG + + ++ N + G+I ++R L++V E ++N+ QI + A Sbjct: 19 MSIIKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAI 78 Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 ++ IG + + + G+ + S K+ + K ++ +R Q K K+GEII Sbjct: 79 KIKKNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAK 138 Query: 146 VKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 V + N+ N+ ++ ++E I E + G+ I V+ + + LSR Sbjct: 139 VDYIINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKD 198 Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264 F+ KL +E+PEI NG++ +K + R G R+K+A+ S + +IDP+G CVG++GS+++ Sbjct: 199 KNFLKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKN 258 Query: 265 VVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR 324 ++ E+ +E IDI+ +S + ++ ++ PA V + +D + V E++ AIG + Sbjct: 259 IIKEINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNK 318 Query: 325 GQNVRLASQLTGWTIDIIT 343 N+RLAS+LTG+ I I+ Sbjct: 319 KTNLRLASKLTGYKIYILN 337 >gi|219558857|ref|ZP_03537933.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] Length = 194 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E+ G+R++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ Sbjct: 2 ESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREA 61 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R+K+AV S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P Sbjct: 62 GHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSP 121 Query: 294 AIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V V+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 122 AKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 170 >gi|162447183|ref|YP_001620315.1| transcription elongation factor NusA [Acholeplasma laidlawii PG-8A] gi|161985290|gb|ABX80939.1| transcription termination factor [Acholeplasma laidlawii PG-8A] Length = 358 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 178/346 (51%), Gaps = 13/346 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 Q + VA + ++++ V + A + G + RVE E ++ ++ V Sbjct: 6 FFQNIEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYGQYYV 64 Query: 69 VEEVE-------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + E E YT + L+ A+ S G ++ + P +F A + K + Sbjct: 65 LPEGELNLELDKKYTF-LKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRFNEV 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD--GVIRRDETISRENLRPG 179 + + +++ Y KD E+++ V E +++ N D ++ + E + + G Sbjct: 124 LNQIKKENIYQGLKDLQYEMVTARVLEEEKDFYRIEI-NKDVITMLPKKEALPTDKFHVG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+K Y+ DV + +GP++ +SRTH + +L VPEI +G ++V ++RDPG R+K+ Sbjct: 183 DRIKVYVTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRSKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 + S++ ++D +GA VG G R++ + L EKID+ WS + + N+L+PA V V Sbjct: 243 GLKSNNENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVVAV 302 Query: 300 V-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 ++ IVP QLSLAIG+ GQNV+LA Q +GW+IDI +E Sbjct: 303 TRVNPKEKSALAIVPDAQLSLAIGKLGQNVKLAVQASGWSIDIKSE 348 >gi|32266771|ref|NP_860803.1| transcription elongation factor NusA [Helicobacter hepaticus ATCC 51449] gi|32262823|gb|AAP77869.1| transcription termination factor NusA [Helicobacter hepaticus ATCC 51449] Length = 375 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 13/349 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I D +AY+K ++ VL ++ + + K A+ D VE + + + LF ++ Sbjct: 3 KILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRMK 62 Query: 68 VVEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + EN + L A+ + IG V L R A+ + + Sbjct: 63 VCADEQDLSEENLGTFLPLSQAKGLG-DVSIGDEVDCELQLDAMSRGAINKLFLNLEYNL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + ++ F+ VG+I++G V ++ GN +++ + ++ + I EN + GD Sbjct: 122 QRSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEIESIRAILPQKNRIKGENFKVGDC 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + V + G QV LSRT P+F+ +L MEVPEI + V + +R PG RAK+AV Sbjct: 182 VRAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+ + IDP+G CVG++G R+ AV EL +E ID V + FV AL PA V V + Sbjct: 242 YSNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSVKI 301 Query: 302 DE----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITE 344 +E + + V + EQ S AIG+ G N+RLAS L I++ ITE Sbjct: 302 EEAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQEITE 350 >gi|317014930|gb|ADU82366.1| transcription elongation factor NusA [Helicobacter pylori Gambia94/24] Length = 395 Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYSVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEVKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|297250843|ref|ZP_06865170.2| transcription termination/antitermination protein NusA [Neisseria polysaccharea ATCC 43768] gi|296837867|gb|EFH21805.1| transcription termination/antitermination protein NusA [Neisseria polysaccharea ATCC 43768] Length = 208 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 129/185 (69%), Gaps = 4/185 (2%) Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EE 346 ++AL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E Sbjct: 1 MSALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEA 60 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D N +D R + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE Sbjct: 61 DERNAAEDAAIR-RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIV 119 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++ RAR+ + + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA + Sbjct: 120 DMLRNRARDAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELA 177 Query: 467 VDDLL 471 VD+L+ Sbjct: 178 VDELI 182 >gi|15612472|ref|NP_224125.1| transcription elongation factor NusA [Helicobacter pylori J99] gi|11387009|sp|Q9ZJA6|NUSA_HELPJ RecName: Full=Transcription elongation protein nusA gi|4156020|gb|AAD06980.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99] Length = 395 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317011648|gb|ADU85395.1| transcription elongation factor NusA [Helicobacter pylori SouthAfrica7] Length = 395 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 189/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ + N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS+ Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSN 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSTEEKESIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|307638171|gb|ADN80621.1| Transcription termination protein [Helicobacter pylori 908] Length = 395 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYSVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEVKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|15646123|ref|NP_208305.1| transcription elongation factor NusA [Helicobacter pylori 26695] gi|2499337|sp|P55977|NUSA_HELPY RecName: Full=Transcription elongation protein nusA gi|2314694|gb|AAD08555.1| transcription termination factor NusA (nusA) [Helicobacter pylori 26695] Length = 395 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|308183617|ref|YP_003927744.1| transcription elongation factor NusA [Helicobacter pylori PeCan4] gi|308065802|gb|ADO07694.1| transcription elongation factor NusA [Helicobacter pylori PeCan4] Length = 395 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 SDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|188528283|ref|YP_001910970.1| transcription elongation factor NusA [Helicobacter pylori Shi470] gi|188144523|gb|ACD48940.1| transcription elongation factor NusA [Helicobacter pylori Shi470] Length = 395 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIGELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|108563823|ref|YP_628139.1| transcription elongation factor NusA [Helicobacter pylori HPAG1] gi|107837596|gb|ABF85465.1| transcription termination factor [Helicobacter pylori HPAG1] Length = 395 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEVKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|208435381|ref|YP_002267047.1| transcription termination factor [Helicobacter pylori G27] gi|208433310|gb|ACI28181.1| transcription termination factor [Helicobacter pylori G27] Length = 395 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317178222|dbj|BAJ56011.1| transcription elongation factor NusA [Helicobacter pylori F16] Length = 395 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ +++V V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMVSKVIQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ + N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NTRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAKEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|217031863|ref|ZP_03437366.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128] gi|298735514|ref|YP_003728035.1| N utilization substance protein A [Helicobacter pylori B8] gi|216946515|gb|EEC25117.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128] gi|298354699|emb|CBI65571.1| N utilization substance protein A [Helicobacter pylori B8] Length = 395 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEVKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|315585900|gb|ADU40281.1| transcription termination factor NusA [Helicobacter pylori 35A] Length = 395 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ + N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|325996770|gb|ADZ52175.1| Transcription termination protein [Helicobacter pylori 2018] gi|325998365|gb|ADZ50573.1| Transcription termination protein [Helicobacter pylori 2017] Length = 395 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYSVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 +S IDP+G VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NSRIDPIGTAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEVKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|207092969|ref|ZP_03240756.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_AG0C1] Length = 387 Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317010112|gb|ADU80692.1| transcription elongation factor NusA [Helicobacter pylori India7] Length = 395 Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PLEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|217034292|ref|ZP_03439709.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10] gi|216943264|gb|EEC22729.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10] Length = 395 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ ++ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKMIQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ + N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCTRIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|308185285|ref|YP_003929418.1| transcription elongation factor NusA [Helicobacter pylori SJM180] gi|308061205|gb|ADO03101.1| transcription elongation factor NusA [Helicobacter pylori SJM180] Length = 395 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|297380632|gb|ADI35519.1| transcription termination factor NusA [Helicobacter pylori v225d] Length = 395 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|308062778|gb|ADO04666.1| transcription elongation factor NusA [Helicobacter pylori Cuz20] Length = 395 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|332674287|gb|AEE71104.1| transcription termination factor NusA [Helicobacter pylori 83] Length = 395 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317013286|gb|ADU83894.1| transcription elongation factor NusA [Helicobacter pylori Lithuania75] Length = 395 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGATVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317181199|dbj|BAJ58985.1| transcription elongation factor NusA [Helicobacter pylori F32] Length = 395 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|254780024|ref|YP_003058131.1| transcription elongation factor NusA [Helicobacter pylori B38] gi|254001937|emb|CAX30190.1| Transcription elongation protein NusA [Helicobacter pylori B38] Length = 395 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317179693|dbj|BAJ57481.1| transcription elongation factor NusA [Helicobacter pylori F30] Length = 395 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVV--EENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + + A+ + + ++ +A Sbjct: 65 GDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ + N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|261838788|gb|ACX98554.1| transcription termination factor A [Helicobacter pylori 51] Length = 395 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLV--IEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 LIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|261840189|gb|ACX99954.1| transcription elongation factor NusA [Helicobacter pylori 52] Length = 395 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLV--IEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 GDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQIKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELNTEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|317182719|dbj|BAJ60503.1| transcription elongation factor NusA [Helicobacter pylori F57] Length = 395 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 188/361 (52%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYE+++ ++++ V+ + K ++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYERNLPKEMISKVIQGCLLKMVQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ + N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|308064276|gb|ADO06163.1| transcription elongation factor NusA [Helicobacter pylori Sat464] Length = 395 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 NDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIGELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|257459336|ref|ZP_05624449.1| transcription termination factor NusA [Campylobacter gracilis RM3268] gi|257443265|gb|EEV18395.1| transcription termination factor NusA [Campylobacter gracilis RM3268] Length = 375 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 110/350 (31%), Positives = 186/350 (53%), Gaps = 18/350 (5%) Query: 8 ELLQIADAVAYEKSID-RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ I +++A EK ++ DV V IQ A R L+G E++P+T + L++ + Sbjct: 3 KITDIIESIANEKGLEPADVKERVKTAFIQTAKR-LFGEEYLYDSEVDPQTKRVKLYQKV 61 Query: 67 EVV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E + ++ I+L A+ + +IG +S + + GR A + + + Sbjct: 62 HVVADDDERLGDHNF-IALSEAKKIGENAEIGDELSYEINIENLGRTASGVLARELNFHI 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + ++ + +K KVG + GTV ++++ G V++ ++ + I EN + GD Sbjct: 121 QRLLEEKIFENYKSKVGTLTHGTVTKIDHDGTTYVEIEDTKAFMPLKNRIKGENFKVGDV 180 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ I +V ++ G ++ LSRT P+F+ L EVPEI +G V ++A +R PG RAK+A Sbjct: 181 LQAVIKNVAIDKSHGIRLELSRTSPKFLEALLAAEVPEIKDGSVIIQACARIPGRRAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAV----VTELRD----EKIDIVVWSPDSATFVINALR 292 + ++DPVGA VG G+R+ AV L+D E ID +S + A+ Sbjct: 241 LSVVSPNVDPVGATVGKGGARIDAVSKFLSKNLQDGSGGESIDAFEYSASPEILITRAMA 300 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 PAIV V + +D G+ V V +Q S AIG+ G N+RLAS L G I++I Sbjct: 301 PAIVNSVKITQD-GKAIVYVNPDQKSKAIGKNGLNIRLASMLCGCEIELI 349 >gi|210135681|ref|YP_002302120.1| transcription elongation factor NusA [Helicobacter pylori P12] gi|210133649|gb|ACJ08640.1| transcription termination factor A [Helicobacter pylori P12] Length = 395 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLA--RYLVVEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ FS Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ L PA + V Sbjct: 245 NARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLVLAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V++ + + +V + + S AIG+ G NV LAS LTG+ I+ Sbjct: 305 PIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|325973212|ref|YP_004250276.1| transcription termination factor NusA [Mycoplasma suis str. Illinois] gi|325989656|ref|YP_004249355.1| antitermination factor NusA [Mycoplasma suis KI3806] gi|323574741|emb|CBZ40397.1| antitermination factor NusA [Mycoplasma suis] gi|323651814|gb|ADX97896.1| transcription termination factor NusA [Mycoplasma suis str. Illinois] Length = 421 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 103/392 (26%), Positives = 193/392 (49%), Gaps = 38/392 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + L+ ++ E S+++ + + +S + Y S +++EI+ E I L++ Sbjct: 4 NHKQFLEAITKISKEYSLEKSTISDFLKESFKYVFEREYSD-SLVKLEIDLENCKIELWK 62 Query: 65 LLEVVEE-------VENYTCQISL-KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 L+VV E +E+ C I + K+ + + +G S+P+ D V++ Sbjct: 63 ELKVVTEEYFYGEGMEDSECLIPVSKLPQRYQKKLKVGQYYSEPVNLEDLSTKIVKNILF 122 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN------VIVDL-------GNSDG 163 + E + + ++ + GE+ G V+++ +IV L + G Sbjct: 123 HFQKLTLETVNQKIHEKWISRKGEVFEGMVEKIFETKEKLPKEIIVSLIDPENEAHTTKG 182 Query: 164 VIRRDETIS---------RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 ++ R + I ENL PG I +V G ++LSRT P + L Sbjct: 183 IVYRSDLIQALSNDGYRLYENLVPGKIYNFEIKEVLENSAGCPIILSRTSPAIVKYLMKK 242 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 + E+++G+V + A++R G R+K+ V + +++IDPVG C+G +G+R++ + ++L +E+I Sbjct: 243 HISEVHDGLVTINAIARISGMRSKVLVSTKNNNIDPVGCCIGPKGNRLKVISSQLLNERI 302 Query: 275 DIVVWSPDSATFVINALRPA-IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 D+++W+ D +INA I+ + +E+ I +I + L LAIG+RG NV+L S Sbjct: 303 DVILWNSDPIKNIINAFSGTRILGYKISEEEENSITLITTIDNLLLAIGKRGTNVKLVSL 362 Query: 334 LTGWTIDIITEEEDSINR------QKDFNERT 359 LTGW I + T +E R KD++ +T Sbjct: 363 LTGWKIFLKTIQEAKAERINYLPIDKDWDAKT 394 >gi|109946702|ref|YP_663930.1| transcription elongation factor NusA [Helicobacter acinonychis str. Sheeba] gi|109713923|emb|CAJ98931.1| N utilization substance protein A [Helicobacter acinonychis str. Sheeba] Length = 395 Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + +AYEK++ ++++ V+ + K A++ ++ R + E + L +L+EV+E+ Sbjct: 7 LIECIAYEKNLPKEMISKVVQGCLLKMAQNELDPLA--RYLVIEENKQLQLIQLVEVLED 64 Query: 72 -----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + + ISL A++ DPS+ I +S L + A+ + + ++ +A Sbjct: 65 DDEGLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLEKAL 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD +K+ Sbjct: 125 EDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDSIKA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ FS+ Sbjct: 185 VLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSFFSN 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV----- 299 +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 245 NSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKI 304 Query: 300 -----------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +++ + + +V + + S AIG+ G NV LAS LT + I+ Sbjct: 305 PIEELSAQEKELIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTSYHIEFE 364 Query: 343 T 343 T Sbjct: 365 T 365 >gi|224438382|ref|ZP_03659309.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] gi|313144824|ref|ZP_07807017.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] gi|313129855|gb|EFR47472.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] Length = 398 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 183/358 (51%), Gaps = 25/358 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I D +AY+K +D VVL ++ + + K A+ + VE + + + LF + Sbjct: 3 KILDIIDLIAYDKGLDNGVVLEIVKNGLIKIAQEEINPLYHYIVEPDVKERILKLFYRKK 62 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + E+ I L A++ + +G + L + R A+ + + Sbjct: 63 VCADDVKLTEEDLATSIPLSQAKEFG-DVSVGDELDCELQLDEMSRGAINKLFLNLEYNL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + D+ F+ ++G+I++G V V E GN V++ + ++ + I E+ + GD Sbjct: 122 QRSIEDQILQGFRAQLGKIVNGQVVGVDERGNTFVEIDSIRALLPQKNRIKGESFKVGDT 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V + G QV LSRT P+F+ +L +EVPEI + V + +R PG RAK+AV Sbjct: 182 IRAVLKFVGINKNGLQVELSRTTPKFLEELLALEVPEIKDNEVMIFKSARIPGDRAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S++ IDP+G CVG++G R+ AV EL +E ID V + F+ AL PA + V + Sbjct: 242 YSNNPRIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFIAKALTPAQILSVKI 301 Query: 302 DE-DVGRIE-----------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E ++ + E V++ +Q S AIG+ G N+RLAS L I++ Sbjct: 302 QEQNIEQSERENMEGEKEKNERKKAIVLIKSDQKSKAIGKGGVNIRLASMLCDCDIEL 359 >gi|47458985|ref|YP_015847.1| transcription elongation factor NusA [Mycoplasma mobile 163K] gi|47458313|gb|AAT27636.1| N-utilization substance protein a [Mycoplasma mobile 163K] Length = 514 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 158/289 (54%), Gaps = 16/289 (5%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEE E Y ++++ A+ +PS+++ D +P F + V Q ++E ++ Sbjct: 82 VEEEEKY-YSMNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFTQSMKEFSKE 140 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIR--RDETISRENLRP--GD 180 ++ + G+II ++ + N V + L N +G I + + N+ GD Sbjct: 141 YLISKYGNLKGQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQNPNIEMVIGD 200 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ Y+ DV+ + RG +V++S T + + KL +E+PEI +G + + A+ R PG R+K+A Sbjct: 201 YVEVYVEDVKPDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKRIPGIRSKIA 260 Query: 241 V----FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 V F+ D IDP+GA VG +GSR+ + L EKID++++ + F+IN++ PA V Sbjct: 261 VSKTSFAPD-GIDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFIINSISPASV 319 Query: 297 TKV--VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + DE V+VP + AIG+ GQNV+LA+ LT +DI++ Sbjct: 320 AHISKINDEANNHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILS 368 >gi|297519524|ref|ZP_06937910.1| transcription elongation factor NusA [Escherichia coli OP50] Length = 178 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 >gi|284992351|ref|YP_003410905.1| NusA domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065596|gb|ADB76534.1| NusA domain protein [Geodermatophilus obscurus DSM 43160] Length = 524 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 26/234 (11%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 AV EK I D V+ + ++ A R G +RV ++ +TG++++ E+ + E Sbjct: 10 AVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVL-AQELGPDGE- 67 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 V R+ D + P DFGR+A +AKQVI+Q++R+AE ++ + E+ Sbjct: 68 --------VVREWDDT------------PSDFGRIAASTAKQVIVQRLRDAEHEQTFGEY 107 Query: 135 KDKVGEIISGTV----KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 K G+I+SG V +R G V+VD+G + V+ E + E+ G R+++Y+ V Sbjct: 108 AGKEGDIVSGIVQADQRRNASGTVLVDIGKVEAVLPAAEQVPGESYPHGSRLRAYVVSVA 167 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 R RGPQV +SRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV +S Sbjct: 168 RTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRTS 221 >gi|237751824|ref|ZP_04582304.1| transcription termination factor NusA [Helicobacter bilis ATCC 43879] gi|229373190|gb|EEO23581.1| transcription termination factor NusA [Helicobacter bilis ATCC 43879] Length = 384 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 177/344 (51%), Gaps = 10/344 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +A E + +D V+ + DS+ K A+ ++ V + ++ L + + Sbjct: 3 KILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKMI 62 Query: 68 VVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V ++ + + I L AR +++ G + + R AV + I +++ Sbjct: 63 VCDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + F+ +G I+ G V V+ GN +++G + ++ I E + G V Sbjct: 123 KLNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGETRAILSLKNRIKGEKFKVGQPV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 +S + VR + G ++ LSRT P+ + +L +EVPEI +G V + ++R PG +AK+A++ Sbjct: 183 RSILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVALY 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 +++ IDP+G+ VG RG R+ AV EL E ID + +S FV +L PA V V L Sbjct: 243 TNNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVKLQ 302 Query: 302 ----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +E+ + V + K Q S AIG+ G N+RLAS LTG+ ++ Sbjct: 303 KADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFEL 346 >gi|269115299|ref|YP_003303062.1| transcription elongation protein NusA [Mycoplasma hominis] gi|268322924|emb|CAX37659.1| Transcription elongation protein NusA [Mycoplasma hominis ATCC 23114] Length = 546 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 175/349 (50%), Gaps = 26/349 (7%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV-------EEV 72 K ID+ V+ +++ K Y +D+ + E + ++ +VV EE Sbjct: 36 KKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHNKVVVGDPITSEEK 95 Query: 73 ENYT-C-QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 + T C +I L A+ DP+++IG +S + F + Q ++ ER Sbjct: 96 DRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKILANFSQDIKNLERKMT 155 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGN-------SDGVIRRDETISRENLRPGDRVK 183 ++ +VG + V G V ++L + S+ V +R IS+ L PGD + Sbjct: 156 CEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQR--IISK--LNPGDWID 211 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V+ E Q+++S + + KLF +E+PEI G++ + ++R PG RAK+++ Sbjct: 212 VVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARIPGERAKVSIKK 271 Query: 244 SD---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 S+ +++ +GA +G R+ + +L EKID+V++S D ++ NAL PA V ++ Sbjct: 272 SNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKNALSPAKVIDLI 331 Query: 301 ---LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP Q +LAIG++GQNV LAS+L +DI+++E+ Sbjct: 332 EVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILSQEQ 380 >gi|261886077|ref|ZP_06010116.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 200 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 171 ISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I E + G+ VK+ I VR +++ G +V LSRT P+F+ L EVPEI +G V ++ Sbjct: 5 IKNEKFKVGNVVKAVIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVIIQNS 64 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +R PG +AK+A+FS+ +ID VGA VG++G R+ AV +EL E ID + +S + A FV Sbjct: 65 ARIPGKKAKIALFSTTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIFVAR 124 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 AL PAIV+ V +D D I +VP EQ S AIG G N+RLAS L+G+ I Sbjct: 125 ALAPAIVSSVKID-DKKAIVSLVP-EQKSKAIGVSGINIRLASMLSGFEI 172 >gi|193216986|ref|YP_002000228.1| transcription elongation factor NusA [Mycoplasma arthritidis 158L3-1] gi|193002309|gb|ACF07524.1| transcription elongation factor NusA [Mycoplasma arthritidis 158L3-1] Length = 524 Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 152/280 (54%), Gaps = 11/280 (3%) Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++ L +A++ + G V+S+ + F + Q Q +RE E+ + K Sbjct: 92 EVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQSFNQSIRELEKKVIVGVYSLK 151 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE---NLRPGDRVKSYIYDVRREQR 194 +G+I+ V + +L + +R+ NL+PGD + YI +V + Sbjct: 152 IGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTANLQPGDSIDVYIDNVGDADK 211 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS---IDPV 251 QVL+S + + KL + EVPEI NG++ + ++R PG RAK+A+ +++ + ++ V Sbjct: 212 NVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPGERAKIAISANEKTPIGVEVV 271 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE-- 309 G+ +G GSR+ V+ +L+ E++D++ +S D TF+ NA+ PA V +V +++ + Sbjct: 272 GSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAISPAKVIDIVENKEKWQANYP 331 Query: 310 ---VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP + +LAIG+RGQNV LAS L +DI ++++ Sbjct: 332 AYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQDQ 371 >gi|294660246|ref|NP_852895.2| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(low)] gi|284811901|gb|AAP56463.2| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(low)] gi|284930355|gb|ADC30294.1| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(high)] Length = 624 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 105/371 (28%), Positives = 184/371 (49%), Gaps = 23/371 (6%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S + L+ VA K+I + + +++ D+I +A + I V I+ + G + Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRAC-AKEDPDQRIDVMIDFDMGLLK 59 Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 +F+L +V+ EE + +I LK A +P+I +G L DF RV + Q Sbjct: 60 IFKLYKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVI-VDLGNSDGVIRRDETISRE 174 QK+ E + E+ K+ +I+ GTV++ E NV+ V+LG + + + E Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285 + K+AV S++ IDPV +G G R++++ L +E ID+ W+ D Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299 Query: 286 FVINALRPAIVTKVVLDEDVGR---IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + NA P + V + ED R +++IV + L IGR G NVRL S +TGW+ID Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359 Query: 343 TEE---EDSIN 350 ++ ED+IN Sbjct: 360 SQSAAIEDNIN 370 >gi|222871752|gb|EEF08883.1| predicted protein [Populus trichocarpa] Length = 274 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 69/163 (42%), Positives = 113/163 (69%), Gaps = 2/163 (1%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM ++ Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ ++K Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 + E VS++L S+ G+ ++ L E I T +DLA +VD+L Sbjct: 121 VEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDEL 161 >gi|284931121|gb|ADC31059.1| transcription elongation factor NusA [Mycoplasma gallisepticum str. F] Length = 622 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 104/371 (28%), Positives = 184/371 (49%), Gaps = 23/371 (6%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S + L+ VA K+I + + +++ D+I +A + I V I+ + G + Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRAC-AKEDPDQRIDVMIDFDMGLLK 59 Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 +F+L +V+ EE + +I L+ A +P+I +G L DF RV + Q Sbjct: 60 IFKLYKVIDDSVGEEEFDEINEIHLRDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVI-VDLGNSDGVIRRDETISRE 174 QK+ E + E+ K+ +I+ GTV++ E NV+ V+LG + + + E Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLVVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285 + K+AV S++ IDPV +G G R++++ L +E ID+ W+ D Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299 Query: 286 FVINALRPAIVTKVVLDEDVGR---IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + NA P + V + ED R +++IV + L IGR G NVRL S +TGW+ID Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359 Query: 343 TEE---EDSIN 350 ++ ED+IN Sbjct: 360 SQSAAIEDNIN 370 >gi|258615950|ref|ZP_05713720.1| transcription elongation factor NusA [Enterococcus faecium DO] Length = 171 Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 63/121 (52%), Positives = 86/121 (71%), Gaps = 1/121 (0%) Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++ +++R+ G R+K+AV S+D +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A Sbjct: 1 EIVSIAREAGDRSKVAVRSNDPNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPA 60 Query: 285 TFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ NAL PA V V+ DE + V+VP QLSLAIG+RGQN RLA++LT IDI + Sbjct: 61 VFIANALNPAQVMDVIFDETNPKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKS 120 Query: 344 E 344 E Sbjct: 121 E 121 >gi|13937007|gb|AAK50007.1|AF363237_1 transcription termination-antitermination factor [Homo sapiens] Length = 172 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 154 VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 ++VD N++ ++ + E I + R G+ +++ I V E P+++LSRT P F+ +L Sbjct: 9 LLVDDDNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSPTFLERLLE 68 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG+RGSRV +V EL +E Sbjct: 69 QEVPEIADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGIVRELCNEN 128 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 ID+V W+ ++ + + L+ ++ + DE+ ++PK Sbjct: 129 IDVVHWTANT-KLLSSVLKSCPISSIAPDEETECDVYMLPK 168 >gi|254671946|emb|CBA04328.1| N utilization substance protein A [Neisseria meningitidis alpha275] Length = 186 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 110/163 (67%), Gaps = 4/163 (2%) Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNERTQFFMQAINV 368 +IV + QL+LAIGR GQNVRLAS LTGW ++I+T E D N +D R + FM +NV Sbjct: 1 MIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR-RLFMDHLNV 59 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ Sbjct: 60 DEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKL 119 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ Sbjct: 120 GE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELI 160 >gi|209554499|ref|YP_002284717.1| transcription elongation factor NusA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209542000|gb|ACI60229.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 458 Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 180/363 (49%), Gaps = 26/363 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAA-RSLYGTMSDIRVEINPETGDISLFRLL 66 E ++ A + I+ +V+ S++ ++ +K R+ G + IN + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPG--ENFETNINLKEGTINCFRNL 66 Query: 67 EVVEEVENY-----TC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VVE + + TC +I L AR + + IG + + DF + V Sbjct: 67 VVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVGQIGS 126 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN---SDGVIR 166 ++ QK+ E R +K + ++I V + Y V V+L + + G + Sbjct: 127 LLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLS 186 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++ Sbjct: 187 RKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEI 246 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F Sbjct: 247 KKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIF 306 Query: 287 VINALRPAIVTKVVLDE---DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + NA+ + +++ E D IV KE L IGR G N+RL +++T W ID+ T Sbjct: 307 IANAIGLDKLKGLLVQENESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVKT 366 Query: 344 EEE 346 E+ Sbjct: 367 IEQ 369 >gi|171920965|ref|ZP_02696343.2| transcription termination factor NusA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179145|ref|ZP_02964862.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024249|ref|ZP_02996946.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518622|ref|ZP_03004069.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524495|ref|ZP_03004495.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273614|ref|ZP_03206149.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551589|ref|ZP_03772535.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902989|gb|EDT49278.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208924|gb|EDU05967.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018911|gb|EDU56951.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997862|gb|EDU66959.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659708|gb|EDX53088.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249642|gb|EDY74423.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379404|gb|EEH01769.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 458 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 182/363 (50%), Gaps = 26/363 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAA-RSLYGTMSDIRVEINPETGDISLFRLL 66 E ++ A + I+ +V+ S++ ++ +K R+ G + IN + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPG--ENFETNINLKEGTINCFRNL 66 Query: 67 EVVEEVENY-----TC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VVE + + TC +I L AR + + IG + + DF + V Sbjct: 67 VVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVGQIGS 126 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN---SDGVIR 166 ++ QK+ E R +K + ++I V + Y V V+L + + G + Sbjct: 127 LLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLS 186 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++ Sbjct: 187 RKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEI 246 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F Sbjct: 247 KKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIF 306 Query: 287 VINALRPAIVTKVVLDEDVG--RIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + NA+ + +++ E+ R + IV KE L IGR G N+RL +++T W ID+ T Sbjct: 307 IANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVKT 366 Query: 344 EEE 346 E+ Sbjct: 367 IEQ 369 >gi|195867649|ref|ZP_03079651.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660706|gb|EDX53961.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 460 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 182/363 (50%), Gaps = 26/363 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAA-RSLYGTMSDIRVEINPETGDISLFRLL 66 E ++ A + I+ +V+ S++ ++ +K R+ G + IN + G I+ FR L Sbjct: 11 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPG--ENFETNINLKEGTINCFRNL 68 Query: 67 EVVEEVENY-----TC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VVE + + TC +I L AR + + IG + + DF + V Sbjct: 69 VVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVGQIGS 128 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN---SDGVIR 166 ++ QK+ E R +K + ++I V + Y V V+L + + G + Sbjct: 129 LLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLS 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++ Sbjct: 189 RKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEI 248 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F Sbjct: 249 KKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIF 308 Query: 287 VINALRPAIVTKVVLDEDVG--RIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + NA+ + +++ E+ R + IV KE L IGR G N+RL +++T W ID+ T Sbjct: 309 IANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVKT 368 Query: 344 EEE 346 E+ Sbjct: 369 IEQ 371 >gi|171920241|ref|ZP_02931610.1| transcription termination factor NusA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508804|ref|ZP_02958262.1| transcription termination factor NusA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701622|ref|ZP_02971327.1| transcription termination factor NusA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902640|gb|EDT48929.1| transcription termination factor NusA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675756|gb|EDT87661.1| transcription termination factor NusA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700854|gb|EDU19136.1| transcription termination factor NusA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 458 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/363 (27%), Positives = 186/363 (51%), Gaps = 26/363 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKA-ARSLYGTMSDIRVEINPETGDISLFRLL 66 E ++ A + I+ +V+ S++ ++ +KA +R+ G + I+ + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYSRTHPG--ENFETNIDLKQGTINCFRNL 66 Query: 67 EVVE--EVENY---TC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VVE +V N TC +I L AR + + IG ++ + +F + V Sbjct: 67 VVVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVGQIGS 126 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN---SDGVIR 166 ++ QK+ E R +K + ++I V V Y V V+L + + G + Sbjct: 127 LLRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTLGYLS 186 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R + I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG +++ Sbjct: 187 RKDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNGNIEI 246 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D F Sbjct: 247 KKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADDKRIF 306 Query: 287 VINALRPAIVTKVVLDEDVG--RIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + NA+ + +++ E+ R + IV K+ L IGR G N+RL +++T W ID+ T Sbjct: 307 IANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNIDVKT 366 Query: 344 EEE 346 E+ Sbjct: 367 IEQ 369 >gi|215428279|ref|ZP_03426198.1| transcription elongation factor NusA [Mycobacterium tuberculosis T92] gi|289571028|ref|ZP_06451255.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] gi|289544782|gb|EFD48430.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] Length = 159 Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/135 (52%), Positives = 95/135 (70%), Gaps = 1/135 (0%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 M KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ + ++ GAC+G G RV+ V++ Sbjct: 1 MRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMS 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQ 326 EL EKIDI+ + D A FV NAL PA V V V+D+ V+VP QLSLAIG+ GQ Sbjct: 61 ELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQ 120 Query: 327 NVRLASQLTGWTIDI 341 N RLA++LTGW IDI Sbjct: 121 NARLAARLTGWRIDI 135 >gi|13357878|ref|NP_078152.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762445|ref|YP_001752400.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11356991|pir||H82905 N-utilization substance protein a UU318 [imported] - Ureaplasma urealyticum gi|6899295|gb|AAF30727.1|AE002129_3 N-utilization substance protein a [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168828022|gb|ACA33284.1| transcription termination factor NusA [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 458 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 101/363 (27%), Positives = 185/363 (50%), Gaps = 26/363 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAA-RSLYGTMSDIRVEINPETGDISLFRLL 66 E ++ A + I+ +V+ S++ ++ +KA R+ G + I+ + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYLRTHPG--ENFETNIDLKQGTINCFRNL 66 Query: 67 EVVE--EVENY---TC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VVE +V N TC +I L AR + + IG ++ + +F + V Sbjct: 67 VVVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVGQIGS 126 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN---SDGVIR 166 ++ QK+ E R +K + ++I V V Y V V+L + + G + Sbjct: 127 LLRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTLGYLS 186 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R + I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG +++ Sbjct: 187 RKDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNGNIEI 246 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D F Sbjct: 247 KKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADDKRIF 306 Query: 287 VINALRPAIVTKVVLDEDVG--RIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + NA+ + +++ E+ R + IV K+ L IGR G N+RL +++T W ID+ T Sbjct: 307 IANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNIDVKT 366 Query: 344 EEE 346 E+ Sbjct: 367 IEQ 369 >gi|225550916|ref|ZP_03771865.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380070|gb|EEH02432.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 458 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 181/363 (49%), Gaps = 26/363 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAA-RSLYGTMSDIRVEINPETGDISLFRLL 66 E ++ A + I+ +V+ S++ ++ +K R+ G + IN + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPG--ENFETNINLKEGTINCFRNL 66 Query: 67 EVVEEVENY-----TC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VVE + + TC +I L AR + + IG + + DF + V Sbjct: 67 VVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQRISIDDFKSIEVGQIGS 126 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN---SDGVIR 166 ++ QK+ E R +K + ++I V + Y V V+L + + G + Sbjct: 127 LLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLS 186 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++ Sbjct: 187 CKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEI 246 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F Sbjct: 247 KKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIF 306 Query: 287 VINALRPAIVTKVVLDEDVG--RIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + NA+ + +++ E+ R + IV KE L IGR G N+RL +++T W ID+ T Sbjct: 307 IANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVKT 366 Query: 344 EEE 346 E+ Sbjct: 367 IEQ 369 >gi|254434624|ref|ZP_05048132.1| transcription termination factor NusA, C-terminal duplication domain protein [Nitrosococcus oceani AFC27] gi|207090957|gb|EDZ68228.1| transcription termination factor NusA, C-terminal duplication domain protein [Nitrosococcus oceani AFC27] Length = 199 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 3/176 (1%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q FM+ ++ Sbjct: 1 MDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFMEQLD 60 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L I ++ Sbjct: 61 VDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIANEET 120 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 I + + +EL + ID + AL GI T E+LA +VD+L+ E +G N EK Sbjct: 121 IETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELM---EIEGMNREK 173 >gi|255030994|ref|ZP_05302945.1| transcription elongation factor NusA [Listeria monocytogenes LO28] Length = 179 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 103/175 (58%) Query: 34 SIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDI 93 ++ A + + ++RV++N E G I + E VE+V + +IS++ A +P Sbjct: 3 ALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVYQP 62 Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D+ +I++G V+R + Sbjct: 63 GDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDSRF 122 Query: 154 VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 + V+LG + ++ ++E + E DR+K Y+ V + +GPQ+ +SRTHP + Sbjct: 123 IYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLL 177 >gi|213022854|ref|ZP_03337301.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 165 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 97/153 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 +F+D+ GEI++G VK+V N+ +++ + Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKS 156 >gi|213421302|ref|ZP_03354368.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 93/147 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNV 154 +F+D+ GEI++G VK+V N+ Sbjct: 124 AMVVDQFRDQEGEIVTGVVKKVNRDNI 150 >gi|294155314|ref|YP_003559698.1| transcription termination factor NusA [Mycoplasma crocodyli MP145] gi|291600250|gb|ADE19746.1| transcription termination factor NusA [Mycoplasma crocodyli MP145] Length = 566 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 10/245 (4%) Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGV 164 F + K IQ+++ E+ Y ++ +GE + + + + G+ +LG DGV Sbjct: 125 FNEKTKTAIKNGFIQQLKANEKAAIYNKYSKLIGEKLKAKILSKNKDGSY--NLGLEDGV 182 Query: 165 ---IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + + NL PG + Y+ +V E + QV +S PQ + L + EVPEI Sbjct: 183 TAFLPYANINQKLNLNPGLFIDVYVDNVSEENKLSQVQVSTDSPQAIYDLLNKEVPEIAQ 242 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSD--SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 G++ V ++ R PG R+K+AV S+ S+DP+ + +G GSR+ + L EK+D++++ Sbjct: 243 GLIDVVSIQRVPGMRSKIAVKKSNPADSLDPISSIIGYNGSRINEISNALGGEKVDVILY 302 Query: 280 SPDSATFVINALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 S FV NAL PA + VV + D ++ + +A+GR NV LA +LTG Sbjct: 303 SDVKEEFVKNALLPAKIIDVVKNNGADNYYFAIVASDSDMYVAMGRGVVNVNLAKKLTGT 362 Query: 338 TIDII 342 I+++ Sbjct: 363 RIELL 367 >gi|312601531|gb|ADQ90786.1| Transcription termination-antitermination factor nusA [Mycoplasma hyopneumoniae 168] Length = 614 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +++ Q A K ID D + + AD +++ + ++ T + I VE N F L Sbjct: 39 IDIFQEAIEFVITKKIDPDAQIKIEAD-LEQLSFKVFNT-NGIVVEEN-------YFDDL 89 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+V + I L A++ DP I + + S + F + QK+ E Sbjct: 90 TDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMHAFKQKISEIV 149 Query: 127 RDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 R+ +YL K+ V +++ ++ G + + S +NL+ G + + Sbjct: 150 RNNVYNKYLSLKNNV--VLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQNLKIGTKHE 207 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V + + QV++S Q + K +PE+ + +++ +++R PG R K+A+ Sbjct: 208 VVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGERCKVAIRR 267 Query: 244 SDSS----IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 ++ + I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ P+ V Sbjct: 268 TEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAMSPSKVICV 327 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 328 KEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQII 373 >gi|144575534|gb|AAZ53949.2| N-utilization substance protein A [Mycoplasma hyopneumoniae 7448] Length = 614 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +++ Q A K ID D + + AD +++ + ++ T + I VE N F L Sbjct: 39 IDIFQEAIEFVITKKIDPDAQIKIEAD-LEQLSFKVFNT-NGIVVEEN-------YFDDL 89 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+V + I L A++ DP I + + S + F + QK+ E Sbjct: 90 TDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMHAFKQKISEIV 149 Query: 127 RDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 R+ +YL K+ V +++ ++ G + + S +NL+ G + + Sbjct: 150 RNNVYNKYLSLKNNV--VLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQNLKIGTKHE 207 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V + + QV++S Q + K +PE+ + +++ +++R PG R K+A+ Sbjct: 208 VVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGERCKVAIRR 267 Query: 244 SDSS----IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 ++ + I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ P+ V Sbjct: 268 TEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAMSPSKVICV 327 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + + + R ++VP Q SLAIG+ G NV+L + LT + II Sbjct: 328 KEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQII 373 >gi|144227706|gb|AAZ44670.2| N-utilization substance protein A [Mycoplasma hyopneumoniae J] Length = 614 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +++ Q A K ID D + + AD +++ + ++ T + I VE N F L Sbjct: 39 IDIFQEAIEFVITKKIDPDAQIKIEAD-LEQLSFKVFNT-NGIVVEEN-------YFDDL 89 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+V + I L A++ DP I + + S + F + QK+ E Sbjct: 90 TDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMHAFKQKISEIV 149 Query: 127 RDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 R+ +YL K+ V +++ ++ G + + S +NL+ G + + Sbjct: 150 RNNVYNKYLSLKNNV--VLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQNLKIGTKHE 207 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V + + QV++S Q + K +PE+ + +++ +++R PG R K+A+ Sbjct: 208 VVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGERCKVAIRR 267 Query: 244 SDSS----IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 ++ + I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ P+ V Sbjct: 268 NEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAMSPSKVICV 327 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 328 KEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQII 373 >gi|71893935|ref|YP_279381.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae J] Length = 617 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +++ Q A K ID D + + AD +++ + ++ T + I VE N F L Sbjct: 42 IDIFQEAIEFVITKKIDPDAQIKIEAD-LEQLSFKVFNT-NGIVVEEN-------YFDDL 92 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+V + I L A++ DP I + + S + F + QK+ E Sbjct: 93 TDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMHAFKQKISEIV 152 Query: 127 RDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 R+ +YL K+ V +++ ++ G + + S +NL+ G + + Sbjct: 153 RNNVYNKYLSLKNNV--VLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQNLKIGTKHE 210 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V + + QV++S Q + K +PE+ + +++ +++R PG R K+A+ Sbjct: 211 VVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGERCKVAIRR 270 Query: 244 SDSS----IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 ++ + I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ P+ V Sbjct: 271 NEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAMSPSKVICV 330 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 331 KEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQII 376 >gi|72080914|ref|YP_287972.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 7448] Length = 617 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +++ Q A K ID D + + AD +++ + ++ T + I VE N F L Sbjct: 42 IDIFQEAIEFVITKKIDPDAQIKIEAD-LEQLSFKVFNT-NGIVVEEN-------YFDDL 92 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+V + I L A++ DP I + + S + F + QK+ E Sbjct: 93 TDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMHAFKQKISEIV 152 Query: 127 RDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 R+ +YL K+ V +++ ++ G + + S +NL+ G + + Sbjct: 153 RNNVYNKYLSLKNNV--VLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQNLKIGTKHE 210 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V + + QV++S Q + K +PE+ + +++ +++R PG R K+A+ Sbjct: 211 VVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGERCKVAIRR 270 Query: 244 SDSS----IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 ++ + I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ P+ V Sbjct: 271 TEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAMSPSKVICV 330 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + + + R ++VP Q SLAIG+ G NV+L + LT + II Sbjct: 331 KEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQII 376 >gi|321310946|ref|YP_004193275.1| transcription termination factor N-utilization substance protein A [Mycoplasma haemofelis str. Langford 1] gi|319802790|emb|CBY93436.1| transcription termination factor N-utilization substance protein A [Mycoplasma haemofelis str. Langford 1] Length = 432 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 1/173 (0%) Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ENL G+ Y+ ++ + LSRT + + + EI G V++KA++R Sbjct: 209 ENLVLGNTYLFYVKEISEVNVHLPIFLSRTDSEITKHVMAKHISEISEGKVEIKAIARIA 268 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G ++K+ V S+D +ID VG C+G +G R++ + EL +EKID+++W+ D VIN+ Sbjct: 269 GFKSKVLVHSNDPNIDAVGCCIGPKGERLKVISRELLNEKIDVILWNEDPVQNVINSFVT 328 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + L ED I ++ + L IG+RG N +L LTGW I++ T +E Sbjct: 329 GKILGYRL-EDENEITLVATLDNLLSCIGKRGSNTKLVYMLTGWKINLKTIQE 380 >gi|304373277|ref|YP_003856486.1| Transcription termination-antitermination factor nusA [Mycoplasma hyorhinis HUB-1] gi|304309468|gb|ADM21948.1| Transcription termination-antitermination factor nusA [Mycoplasma hyorhinis HUB-1] Length = 557 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 136/274 (49%), Gaps = 15/274 (5%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I L A++ +P+ + P+ +F + Q QK+ E R Y ++ Sbjct: 116 IPLSTAKEINPNAKVDDTFDIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLK 175 Query: 139 GEIISGT-VKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 II T +K+ + G + G + + IS N+ + + +I DV Q+ Q Sbjct: 176 NSIIKATLIKKSQNGFNYLLEGEIPAYMPKP-NISNFNIALNTKEEVFIEDVLDNQKDSQ 234 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVG 252 ++LS + + E+PE+ GI+++ V+R+ G R+K++V + +D VG Sbjct: 235 IILSSKEGMILKEKLKREIPEVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVG 294 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE--- 309 + +G GSR+ + E+ EKIDIV + P+ ++INAL PA +VV E+V + + Sbjct: 295 SLIGKNGSRIATINKEILGEKIDIVRYDPNITKYIINALSPA---RVVYIEEVKKSKGQK 351 Query: 310 --VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP + AIG+ NVRLA++LT IDI Sbjct: 352 FLVVVPTSHQAKAIGKNAINVRLANELTRTKIDI 385 >gi|56808097|ref|ZP_00365889.1| COG0195: Transcription elongation factor [Streptococcus pyogenes M49 591] Length = 164 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 15/134 (11%) Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR--------------DEK 273 +VSR+ G R K+AV S + ++D +G VG GS ++ V+++ +E Sbjct: 3 SVSREAGDRTKVAVRSHNPNVDAIGTMVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEEN 62 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ W D A F+ NA+ PA V V+ D ED+ R V+VP +LSLAIGRRGQNVRLA+ Sbjct: 63 IDVIQWVDDPAEFIYNAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAA 122 Query: 333 QLTGWTIDIITEEE 346 LTG+ IDI + E Sbjct: 123 HLTGYRIDIKSASE 136 >gi|330723850|gb|AEC46220.1| transcription elongation factor NusA [Mycoplasma hyorhinis MCLD] Length = 538 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I L A++ +P+ + P+ +F + Q QK+ E R Y ++ Sbjct: 116 IPLSTAKEINPNAKVDDTFDIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLK 175 Query: 139 GEIISGT-VKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 II T +K+ + G + G + + IS N+ + +I DV Q+ Q Sbjct: 176 NSIIKATLIKKSQNGFNYLLEGEIPAYMPKP-NISNFNIALNTEEEVFIEDVLDNQKDSQ 234 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVG 252 ++LS + + E+PE+ GI+++ V+R+ G R+K++V + +D VG Sbjct: 235 IILSSKEGMILKEKLKREIPEVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVG 294 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE--- 309 + +G GSR+ + E+ EKIDIV + P+ ++INAL PA +VV E+V + + Sbjct: 295 SLIGKNGSRIATINKEILGEKIDIVRYDPNITKYIINALSPA---RVVYIEEVKKSKGQK 351 Query: 310 --VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP + AIG+ NVRLA++LT IDI Sbjct: 352 FLVVVPTSHQAKAIGKNAINVRLANELTRTKIDI 385 >gi|54020616|ref|YP_116111.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 232] gi|53987789|gb|AAV27990.1| transcription termination-antitermination factor nusA [Mycoplasma hyopneumoniae 232] Length = 614 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 165/346 (47%), Gaps = 21/346 (6%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +++ Q A K ID D + + AD +++ + ++ T + I VE N F L Sbjct: 39 IDIFQEAIEFVITKKIDPDAQIKIEAD-LEQLSFKVFNT-NGIVVEEN-------YFDDL 89 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+V + I L A++ DP I + + S + F + QK+ E Sbjct: 90 TDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMHAFKQKISEIV 149 Query: 127 RDR---QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 R+ +YL K+ V +++ ++ G + + S +NL+ G + + Sbjct: 150 RNNVYNKYLSLKNNV--VLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQNLKIGTKHE 207 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V + + QV++S Q + K +PE+ + +++ +++R PG R K+A+ Sbjct: 208 VVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGERCKVAIRR 267 Query: 244 SDSS----IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 ++ + I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ P+ V Sbjct: 268 TEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAMSPSKVICV 327 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + + + R V+V Q SLAIG+ G NV+L + LT + II Sbjct: 328 KEFKIGHKLRRFIVVVTDFQHSLAIGKNGSNVKLVADLTRCQVQII 373 >gi|293363915|ref|ZP_06610651.1| putative transcription termination factor NusA [Mycoplasma alligatoris A21JP2] gi|292552405|gb|EFF41179.1| putative transcription termination factor NusA [Mycoplasma alligatoris A21JP2] Length = 564 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 112/195 (57%), Gaps = 6/195 (3%) Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 +R L+ G + YI V E + QV +S PQ + L EVPEI G+V++ + R Sbjct: 192 TRIELKHGVLIDVYIETVSEENKLSQVQVSTDSPQMVYDLLKNEVPEIAQGLVEIMNIQR 251 Query: 232 DPGSRAKLAV--FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 PG R+K+AV S +S +DP+ + +G+ GSR+ + +L EKID++++S + ++ N Sbjct: 252 APGIRSKIAVRKTSVESEVDPISSVIGVNGSRINEISRKLGGEKIDVILYSEEITEYIKN 311 Query: 290 ALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 AL PA + VV ++ D ++ + + +A+G+ NV LA +++G I++I E Sbjct: 312 ALSPARIVDVVKNKAMDNYYYAIVNSETDMYVAMGKGVVNVNLAKKISGCRIELIKAAE- 370 Query: 348 SINRQKDFNERTQFF 362 ++ + +FN + +F+ Sbjct: 371 AVEKGLEFN-KAKFY 384 >gi|71894695|ref|YP_278803.1| transcription elongation factor NusA [Mycoplasma synoviae 53] Length = 561 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 138/275 (50%), Gaps = 9/275 (3%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I L A++ + + +G ++S P+ F + + + + + E ++R + ++ + Sbjct: 98 IGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAAIAEKAKNRLFAKYHPLI 157 Query: 139 G-EIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 G +++ + E G + L + + + ++ I L PG + ++ V + +G Sbjct: 158 GSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPGQKFDVFLNSVNIDAKGL 217 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF-----SSDSSIDPV 251 + ++ T P+ + + E+PEI NG + ++ + R PG R+K+ V S + D + Sbjct: 218 YLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKVVVSLNPEKQSAHTHDLL 277 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GA G + R+ V L +EKID++ ++ + F+ NA+ P V VV + VI Sbjct: 278 GAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPCPVVDVV--KSKKGFYVI 335 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V E +SLAIG G NV LAS++T ID+++ E+ Sbjct: 336 VRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQ 370 >gi|144575229|gb|AAZ44092.2| N-utilization substance protein A [Mycoplasma synoviae 53] Length = 560 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 138/275 (50%), Gaps = 9/275 (3%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I L A++ + + +G ++S P+ F + + + + + E ++R + ++ + Sbjct: 97 IGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAAIAEKAKNRLFAKYHPLI 156 Query: 139 G-EIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 G +++ + E G + L + + + ++ I L PG + ++ V + +G Sbjct: 157 GSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPGQKFDVFLNSVNIDAKGL 216 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF-----SSDSSIDPV 251 + ++ T P+ + + E+PEI NG + ++ + R PG R+K+ V S + D + Sbjct: 217 YLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKVVVSLNPEKQSAHTHDLL 276 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GA G + R+ V L +EKID++ ++ + F+ NA+ P V VV + VI Sbjct: 277 GAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPCPVVDVV--KSKKGFYVI 334 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V E +SLAIG G NV LAS++T ID+++ E+ Sbjct: 335 VRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQ 369 >gi|118795363|ref|XP_561027.4| Anopheles gambiae str. PEST AGAP012738-PA [Anopheles gambiae str. PEST] gi|116133283|gb|EAL42227.2| AGAP012738-PA [Anopheles gambiae str. PEST] Length = 129 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 81/119 (68%), Gaps = 1/119 (0%) Query: 154 VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 +++D ++ ++ ++ I + R GD V++ I V + + PQ+++SRT P+F+ KL Sbjct: 9 ILLDDEGNEFILPKENQIPSDFFRKGDSVRAVIESVDKGSK-PQIIVSRTAPKFLEKLLE 67 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +E+PEI +G + +K V R PG +AK+AV + D IDPVGACVG++GSR+ VV ELR+E Sbjct: 68 LEIPEIQDGTIILKKVVRIPGEKAKIAVDAYDDRIDPVGACVGVKGSRIHGVVRELRNE 126 >gi|291320687|ref|YP_003515952.1| transcription elongation protein NusA [Mycoplasma agalactiae] gi|290753023|emb|CBH40999.1| Transcription elongation protein NusA [Mycoplasma agalactiae] Length = 544 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 23/247 (9%) Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGT-VKRVEYG--NV-IVDLGNSDGVIRR---DET 170 I+Q +++ ++ Y ++ +K+GE + T + + G NV IVD DGVI + Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISKNSKGSWNVQIVD----DGVIAHLPANYV 199 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 ++ + PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V Sbjct: 200 SAKRVINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQ 259 Query: 231 RDPGSRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWS 280 R PG R K AVF++ + +D GA +G SR+ +++E+ EK D++V++ Sbjct: 260 RIPGERTK-AVFNASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADMEKFDVIVYT 318 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D F+ + P V +V +E VI K LS AIG++G N LAS+++ + Sbjct: 319 SDKKEFIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNL 378 Query: 340 DIITEEE 346 DIIT EE Sbjct: 379 DIITVEE 385 >gi|148377961|ref|YP_001256837.1| transcription elongation factor NusA [Mycoplasma agalactiae PG2] gi|148292007|emb|CAL59399.1| Transcription elongation protein NusA [Mycoplasma agalactiae PG2] Length = 544 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 23/247 (9%) Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDLGNSDGVIRR---DET 170 I+Q +++ ++ Y ++ +K+GE + T + + IVD DGVI + Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISMNSKGSWNVQIVD----DGVIAHLPANYV 199 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 ++ + PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V Sbjct: 200 SAKRVINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQ 259 Query: 231 RDPGSRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWS 280 R PG R K AVF + + +D GA +G SR+ +++E+ EK D++V++ Sbjct: 260 RIPGERTK-AVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYT 318 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D F+ + P V +V +E VI K LS AIG++G N LAS+++ + Sbjct: 319 SDKKEFIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNL 378 Query: 340 DIITEEE 346 DIIT EE Sbjct: 379 DIITVEE 385 >gi|319776808|ref|YP_004136459.1| n-utilization substance protein a [Mycoplasma fermentans M64] gi|318037883|gb|ADV34082.1| N-utilization substance protein A [Mycoplasma fermentans M64] Length = 538 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 27/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-------RLLEVVEEVENYTCQI 79 V+ + ++ + + ++I E++ E ++ +F + E++ ++EN + Sbjct: 37 VIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTKDEELLLDLENQISFV 96 Query: 80 SLKVARDRDPS----------IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 K A+ R P ID+G + P + S+ I Q ++ ++ Sbjct: 97 GYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS---IAQAIKTLQKKM 153 Query: 130 QYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + ++ K+G+ + + NV + N + + ++ PG I Sbjct: 154 VFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKRKANPGQYFDVVI 213 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF---S 243 V E + Q+ +S P+ + + +PEI G+++V V R PG R K+AV Sbjct: 214 EKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPGERVKVAVKLAEG 273 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302 ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ P V+L D Sbjct: 274 ANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSISPIPAVDVILKD 333 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 E + VIV E L+ AIG+RG N LAS LT +DII+ Sbjct: 334 ERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIIS 374 >gi|238809615|dbj|BAH69405.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 538 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 27/341 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-------RLLEVVEEVENYTCQI 79 V+ + ++ + + ++I E++ E ++ +F + E++ ++EN + Sbjct: 37 VIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTKDEELLLDLENQISFV 96 Query: 80 SLKVARDRDPS----------IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 K A+ R P ID+G + P + S+ I Q ++ ++ Sbjct: 97 GYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS---IAQAIKTLQKKM 153 Query: 130 QYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + ++ K+G+ + + NV + N + + ++ PG I Sbjct: 154 VFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKRKANPGQYFDVVI 213 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF---S 243 V E + Q+ +S P+ + + +PEI G+++V V R PG R K+AV Sbjct: 214 EKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPGERVKVAVKLAEG 273 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302 ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ P V+L D Sbjct: 274 ANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSISPIQAVDVILKD 333 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 E + VIV E L+ AIG+RG N LAS LT +DII+ Sbjct: 334 ERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIIS 374 >gi|12240026|gb|AAG49545.1|AF261103_1 NusA protein [Myxococcus xanthus DK 1622] Length = 254 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 4/133 (3%) Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI Sbjct: 1 DPARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDI 60 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + E + ++F R+ + +N E++ L A GF ++A +A + G Sbjct: 61 NS--ESRVRELREFANRSLGSLPGVN--EMLVETLYAHGFRQARDIAEANAELLAQLPGI 116 Query: 402 DEETAVEIQGRAR 414 D +Q AR Sbjct: 117 DPARIPSMQEAAR 129 >gi|308189651|ref|YP_003922582.1| N utilization substance protein A [Mycoplasma fermentans JER] gi|307624393|gb|ADN68698.1| N utilization substance protein A [Mycoplasma fermentans JER] Length = 538 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIIS 374 >gi|313678838|ref|YP_004056578.1| transcription termination factor nusA [Mycoplasma bovis PG45] gi|312950148|gb|ADR24743.1| putative transcription termination factor nusA [Mycoplasma bovis PG45] Length = 544 Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 25/248 (10%) Query: 118 IIQKVREAERDRQYLEFKDKVGE-----IISGTVKRVEYGNVIVDLGNSDGVIRR---DE 169 I+Q +++ ++ Y ++ +K+GE IS K + IVD DGV+ + Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVMFISKNTKG-SWNVQIVD----DGVMAHLPANY 198 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 ++ + PG I V +E + Q+ +S P+ + K+ + +PEI +G++++ V Sbjct: 199 VSAKRVINPGSYGDVVIERVEKETKLSQITVSLDSPKLIEKILYNNIPEINSGLIEIVNV 258 Query: 230 SRDPGSRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVW 279 R PG R K AVF + + +D GA +G SR+ +++EL EK D++V Sbjct: 259 QRIPGERTK-AVFRATPGNEHLDVYGAIIGHDSSRINLIISELNFGVNQADMEKFDVIVH 317 Query: 280 SPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + D F+ + P V +V +E VI K LS AIG++G N LAS+++ Sbjct: 318 TNDKKEFIRRCMLPGQVLDIVPKNESQNTFYVITIKAALSAAIGKKGANTMLASKVSHCN 377 Query: 339 IDIITEEE 346 +DIIT EE Sbjct: 378 LDIITVEE 385 >gi|240047659|ref|YP_002961047.1| transcription elongation factor NusA [Mycoplasma conjunctivae HRC/581] gi|239985231|emb|CAT05244.1| N-utilization substance protein A [Mycoplasma conjunctivae] Length = 623 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 132/267 (49%), Gaps = 14/267 (5%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR---QYLEFK 135 I+ K+A+ D + +G V + F + QSA Q Q E R R +YL K Sbjct: 108 IAKKIAKPED--LQVGNRVKIEIDITTFDKSIFQSAIQNFKQTNSEINRQRIYDKYLPLK 165 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + V I++ ++ G + + + + L+ GD ++ I DV + + Sbjct: 166 NTV--ILAKITNKIHSGYIFELVEDKVAAFMPSHYSIGQKLKVGDILEVVIEDVNKSSKQ 223 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD----SSIDPV 251 Q+++S Q + +PE+ +++ +++R PG + K+AV ++ I + Sbjct: 224 SQIIVSSKSIQLVKNKIINAIPELQTNNLEIVSIARIPGEKCKVAVKKTNLPGSDHISEL 283 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IVTKVVLDEDVGRI 308 GA +G +G R++++ +L E+I+IV + + TFV NA+ PA V + ++ Sbjct: 284 GAIIGEKGVRIESISQDLDGEQIEIVKYDENILTFVANAIAPARVVCVKEFKINNKNKHY 343 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLT 335 V+VP Q +LAIG++G NV+LA+ LT Sbjct: 344 TVVVPDFQHTLAIGKKGSNVQLATDLT 370 >gi|153812998|ref|ZP_01965666.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174] gi|149830945|gb|EDM86035.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174] Length = 162 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 87/142 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++ E Sbjct: 4 ELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAERE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E V++ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRV 149 Y ++ E+++G V+RV Sbjct: 124 KVLYDQYYGMEKEVVTGIVQRV 145 >gi|300508327|pdb|2KWP|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli Nusa Length = 129 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 76/120 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 >gi|153812997|ref|ZP_01965665.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174] gi|149830944|gb|EDM86034.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174] Length = 139 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/90 (52%), Positives = 61/90 (67%) Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D V+VP Q Sbjct: 1 MNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKTALVVVPDYQ 60 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 61 LSLAIGKEGQNARLAARLTGFKIDIKSETQ 90 >gi|56807387|ref|ZP_00365366.1| COG0195: Transcription elongation factor [Streptococcus pyogenes M49 591] Length = 154 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 87/151 (57%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + + E+K+ GEI++GTV+R + + V+L Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNL 154 >gi|169245954|gb|ACA50975.1| nucleic acid binding protein [Mycobacterium marinum DL240490] Length = 182 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264 P + VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ Sbjct: 31 PNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSCVAGINPVSVCIGWGGLRIAD 90 Query: 265 VVTELRDEKIDIVVWSPDSATFVINAL---RPAIVTKVVLDEDVGRIEVIVPKEQLSLAI 321 V L E+I +V + D AT+VINAL +E RI V V + Sbjct: 91 VEKGLGGERIHVVAYHVDPATYVINALGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTV 150 Query: 322 GRRGQNVRLASQLTGWTIDIITEEE 346 G+ GQNVRLAS+LTG I+I+ E+ Sbjct: 151 GKAGQNVRLASKLTGQKIEILVEKS 175 >gi|15828674|ref|NP_326034.1| transcription elongation factor NusA [Mycoplasma pulmonis UAB CTIP] gi|14089616|emb|CAC13376.1| N-UTILIZATION SUBSTANCE PROTEIN A [Mycoplasma pulmonis] Length = 550 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 134/281 (47%), Gaps = 20/281 (7%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV--IIQKVREAERDRQYLEF-K 135 + L AR + IG +V + + + K++ I Q+ E + L+F Sbjct: 112 VRLSDARKEKSDVQIGDIVKKQIKH---DELKLNEVKKIFSIFQQNLAKEAKQSVLDFYS 168 Query: 136 DKVGEIISGTVKRVE----YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 K+G+ I ++ + +G+V+ D+ + + E + G ++ Y + + Sbjct: 169 SKIGQKIQVKIEEFKNRGFFGSVVGDM-ETKVFLPNKEINKNSKIALGKKIDVYFIEFAK 227 Query: 192 E-QRGPQVLL--SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS---D 245 E Q + LL S P ++ + EI NG + +K ++R G R K+AV S Sbjct: 228 EFQNKSETLLIVSLNSPLEVINVLKETFEEIANGSIIIKKIARKAGIRTKIAVEKSHLAS 287 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT---KVVLD 302 ++ +G +G G R + + +L +EKID V++ D F++ +L+PA V +VV + Sbjct: 288 EGLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIYKEDLQEFIVESLKPANVISIERVVPE 347 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + V+VP Q+S+AIG+ G N L+S+L+ I+I T Sbjct: 348 THIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQSRINIET 388 >gi|207109944|ref|ZP_03244106.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 127 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 69/107 (64%) Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 GV+ I E+ + GD +K+ + V+R ++G + LSRT P+ + L +EVPEI + Sbjct: 13 GVLSMRHRIKGESFKVGDSIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDK 72 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 +++ +R PG+RAK++ FS ++ IDP+GA VG++G R+ A+ EL Sbjct: 73 EIEIIHCARIPGNRAKVSFFSHNARIDPIGAAVGVKGVRINAISNEL 119 >gi|209418048|ref|YP_002274077.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT] gi|169409180|gb|ACA57586.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT] Length = 184 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264 P + VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ Sbjct: 31 PNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIAD 90 Query: 265 VVTELRDEKIDIVVWSPDSATFVINAL-----RPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 V L E+I +V + D AT+VINAL +E RI V V Sbjct: 91 VEKGLGGERIHVVAYHVDPATYVINALGCPGTGTGTGAAAAAEERSRRIRVRVEAHDYPR 150 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEE 346 +G+ GQNVRLAS+LTG I+I+ E+ Sbjct: 151 TVGKAGQNVRLASKLTGQKIEILVEKS 177 >gi|49146092|ref|YP_025530.1| nucleic acid binding protein [Mycobacterium ulcerans Agy99] gi|42414726|emb|CAE46819.1| possible nucleic acid binding protein [Mycobacterium ulcerans Agy99] Length = 182 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264 P + VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ Sbjct: 31 PNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIAD 90 Query: 265 VVTELRDEKIDIVVWSPDSATFVINAL---RPAIVTKVVLDEDVGRIEVIVPKEQLSLAI 321 V L E+I +V + D AT+VIN L +E RI V V + Sbjct: 91 VEKGLGGERIHVVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTV 150 Query: 322 GRRGQNVRLASQLTGWTIDIITEEE 346 G+ GQNVRLAS+LTG I+I+ E+ Sbjct: 151 GKAGQNVRLASKLTGQKIEILVEKS 175 >gi|409843|gb|AAD10598.1| Significant homology to E.coli protein NusA X00513 [Mycoplasma genitalium] Length = 217 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 10/216 (4%) Query: 53 INPETGDISLFRLLEVV-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV 109 IN + G I++ +L VV +E E+Y +I L+ A + S+ +G V+ P+P + Sbjct: 2 INFDKGIINVEQLFNVVSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSD 61 Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN------VIVDLGNSDG 163 + + QK+ E EF +VGE+I V+ ++ I++L + G Sbjct: 62 LINKMIAIFNQKISETNFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKG 121 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 I + E E L G + I +++R+ + LSR+ + + L PEI NG Sbjct: 122 YISKRELSKGERLEIGKKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGT 181 Query: 224 VQVKAVSRDPGSRAKLAVFSSDS-SIDPVGACVGMR 258 + +K + R PG ++K+AV S+D+ S DPV A +G + Sbjct: 182 IVIKKIERSPGVKSKIAVISNDACSWDPVAAILGPK 217 >gi|33322909|gb|AAQ07191.1|AF496499_1 transcription termination/antitermination factor [Lactobacillus delbrueckii subsp. lactis] Length = 95 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 1/86 (1%) Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 ++G V++ +++R+ G R K+AV S+D +IDPVG CVG RGSRVQ VV EL E IDIV + Sbjct: 1 FDGTVEIISIAREAGERTKIAVKSNDPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQY 60 Query: 280 SPDSATFVINALRPAIVTKVVL-DED 304 D + ++ NAL PA V V DED Sbjct: 61 EEDPSDYIANALNPAEVIAVQFEDED 86 >gi|331006261|ref|ZP_08329581.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330419950|gb|EGG94296.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 159 Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++++ + + FM+A++VDE +A +LV EGF +EE+A V + E+ IEGFDE+ A E+ Sbjct: 9 KQEQEAGGQVELFMEALDVDEDVAAVLVEEGFTSLEEVAYVPLEEMLGIEGFDEDIANEL 68 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 + RA++ L + ++K+ +E+L ++ G+D+ + L + G+ MEDLA +VD+ Sbjct: 69 RSRAKDTLLTKALASEEKLEGAEPAEDLVAMEGMDNALAAVLAKRGVVCMEDLAEQAVDE 128 Query: 470 LL---GWSENKGGNI 481 LL G +E + + Sbjct: 129 LLDIDGMTEERAAAL 143 >gi|296163996|ref|ZP_06846621.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900648|gb|EFG80029.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 148 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 73/128 (57%) Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 +PE+ NG V++ AV+R+PG AK+AV S I+ V C+G G R+ V L E + Sbjct: 1 MPELANGSVEIIAVAREPGLLAKVAVRSRVRGINAVAVCIGWGGLRIADVEKRLCGEHVS 60 Query: 276 IVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 I+ + D+A +VINAL V++ + RI V V + + A+G+ G N+RL QLT Sbjct: 61 IIAYDSDTARYVINALGIKSAIAEVINPEQRRIRVYVNPDDYARALGKVGHNLRLVRQLT 120 Query: 336 GWTIDIIT 343 +I I T Sbjct: 121 SCSIHIRT 128 >gi|218678853|ref|ZP_03526750.1| transcription elongation factor NusA [Rhizobium etli CIAT 894] Length = 82 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E MI+ AR GWI Sbjct: 1 EDGIKTIEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMIVQARLSAGWI 60 Query: 513 EKE---KVADEEVQDA 525 +E K A+EEV DA Sbjct: 61 TQEDLAKEAEEEVTDA 76 >gi|145346768|ref|XP_001417855.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578083|gb|ABO96148.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 710 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%) Query: 133 EFKDKVGEIISGTVK-RVEYGNVIVDL-GNSDGVIRRDETISREN---LRPGDRVKSYIY 187 +F ++G ++ GT++ R E G+ ++D+ G + GVI +E + N L+ GD + ++ Sbjct: 332 DFVGQIGNVVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQLLTYNDLPLKQGDELSCFVL 391 Query: 188 DV------RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 DV REQ V+LS T P + + EVPE+ G +++K+++R G K+AV Sbjct: 392 DVDQNLFTGREQ--TPVVLSMTIPALVGAIIREEVPEVARGEIEIKSIARMAGKVTKVAV 449 Query: 242 F---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 S S + V C+G S ++ + E + + WS D A + ++L PA V + Sbjct: 450 ALREGSTSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWSDDPAELIKSSLFPAEVLR 509 Query: 299 VVLDEDVG----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-ITEEEDSINRQK 353 V G + V + L AIG G NV+L + LT I I + E + R+ Sbjct: 510 VEESFPDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTNAFIVIEVDETAGNTQRRG 569 Query: 354 DFNE 357 FN+ Sbjct: 570 SFND 573 >gi|328479976|gb|EGF49013.1| transcription elongation factor NusA [Lactobacillus rhamnosus MTCC 5462] Length = 117 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 70/114 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+ Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQR 117 >gi|255077143|ref|XP_002502222.1| predicted protein [Micromonas sp. RCC299] gi|226517487|gb|ACO63480.1| predicted protein [Micromonas sp. RCC299] Length = 897 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 22/232 (9%) Query: 134 FKDKVGEIISGTV----KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 ++ K G+++ TV +R EY + D + + +E+I + G+RV + + +V Sbjct: 425 YRAKRGQMVECTVVAEGRRGEYLLRLDD--GAMACLPEEESIPGKKYSQGERVCALVMEV 482 Query: 190 R-----REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++R P V++S + ++ EVPE+ G V +K+V+R G +K+AV Sbjct: 483 EDRTWAADRRAP-VIVSTAIAGLLAEVLAAEVPEVARGDVVIKSVARVSGKMSKVAVARQ 541 Query: 245 DSS---IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + + DPV ACVG+ SR++A+ L E I+ WS + V AL PA V +VV Sbjct: 542 EGAEKVFDPVLACVGVENSRLRAIRERLGGEVCQILTWSDNREDMVAEALFPAAVHRVVK 601 Query: 302 DED-------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 E+ + + V + + AIG G NV+LA+ LTG I I EE Sbjct: 602 AEEDDMDGRALDKFIAYVSRFDEAKAIGAGGVNVKLAAALTGCFILIERHEE 653 >gi|308804463|ref|XP_003079544.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri] gi|116057999|emb|CAL54202.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri] Length = 615 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 19/219 (8%) Query: 134 FKDKVGEIISGTVK-RVEYGNVIVDLGN-SDGVIRRDETISREN---LRPGDRVKSYIYD 188 + +++G + GT + R E G+ +VD+ + + GVI +E + N L+ GD V Y+ D Sbjct: 334 YVEQIGSLCVGTTRFRSEDGSWMVDIADGAAGVIPPEEQLQLFNDRQLKQGDEVSCYVLD 393 Query: 189 VR------REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV- 241 V REQ V+LS T P + + EVPEI G V++KA++R G K+AV Sbjct: 394 VDQNLFTGREQ--TPVVLSMTIPAVVAAIIRDEVPEIAKGDVEIKAIARIAGKITKVAVA 451 Query: 242 -FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 S + + CVG+ R++ + E + + WS D + V AL PA V V Sbjct: 452 PVPGSSIWNTIDVCVGVDQVRLKRIRERAGGEVVHFINWSDDPSEVVKAALFPADVKSVE 511 Query: 301 LDEDVG----RIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 G + V + + AIG G NV+L + LT Sbjct: 512 KSFPDGSQRPKFTAYVSEFDVKRAIGTNGNNVKLCAALT 550 >gi|303279869|ref|XP_003059227.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459063|gb|EEH56359.1| predicted protein [Micromonas pusilla CCMP1545] Length = 511 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 26/229 (11%) Query: 134 FKDKVGEIISGTV----KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 ++ + GE++ TV +R EY + D + + +E I + GDRV + + V Sbjct: 25 YRVRTGEMVEATVVSEGRRGEYLLKLDD--GAFACLPAEEGIPEKRYGQGDRVSALVLGV 82 Query: 190 R-----REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++R P V++S + ++ EVPE+ G V +++V+R G +K+AV Sbjct: 83 EDQTWAADRRAP-VVVSTAIAGLLAEVLKKEVPEVATGDVVIRSVARVSGKMSKVAVSRR 141 Query: 245 DSSI---DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-- 299 D ++ DPV ACVG SR+ A+ L E I+ WS V AL PA V +V Sbjct: 142 DGAVGTWDPVLACVGENNSRMLAIRERLGGETCQILTWSDVQEEMVAEALFPAQVVRVDK 201 Query: 300 ---VLDEDVG------RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE G + V + + AIG G NV+LA+ L G I Sbjct: 202 ALEEADEHGGKEFAMDKYVAYVNQFDEAKAIGAGGINVKLAAALCGCFI 250 >gi|213021473|ref|ZP_03335920.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 156 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ Sbjct: 10 QAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRE 69 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 70 RAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLA 129 Query: 472 ---GWSENKGGNI 481 G ++ K G + Sbjct: 130 DIEGLTDEKAGEL 142 >gi|215428280|ref|ZP_03426199.1| transcription elongation factor NusA [Mycobacterium tuberculosis T92] gi|289751502|ref|ZP_06510880.1| N utilization substance protein A nusA [Mycobacterium tuberculosis T92] gi|289692089|gb|EFD59518.1| N utilization substance protein A nusA [Mycobacterium tuberculosis T92] Length = 166 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 32/160 (20%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 10 AIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------------ 57 Query: 75 YTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +AR+ D + G ++S+ P FGR+A +A+QV++Q+ R+AE +R Y E Sbjct: 58 --------IARETD---EAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGE 106 Query: 134 FKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVI 165 F + GEI++G ++R N V+V +G S+GVI Sbjct: 107 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVI 146 >gi|291532985|emb|CBL06098.1| hypothetical protein MHY_11450 [Megamonas hypermegale ART12/1] Length = 65 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/37 (67%), Positives = 30/37 (81%) Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 4 VIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 40 >gi|254993851|ref|ZP_05276041.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-064] Length = 104 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 53/101 (52%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108 VE+V + +IS++ A +P G VV + P DFGR Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGR 104 >gi|153873980|ref|ZP_02002373.1| transcription elongation factor NusA [Beggiatoa sp. PS] gi|152069557|gb|EDN67628.1| transcription elongation factor NusA [Beggiatoa sp. PS] Length = 99 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L + D V+ EK + ++V+ + + +I A + Y D+RV I+ TGD FR + Sbjct: 4 DILLVVDVVSNEKGVSKEVIFNALECAIASATKKRYEGEVDVRVHIDRRTGDYKAFRRWQ 63 Query: 68 VVEEVENY---TCQISLKVARDRDPSIDIG 94 VEE E Q++L A+ +P+I IG Sbjct: 64 AVEEEEELDSPHTQMNLTEAQIHNPNIAIG 93 >gi|21228370|ref|NP_634292.1| transcription elongation factor NusA-like protein [Methanosarcina mazei Go1] gi|20906840|gb|AAM31964.1| NusA protein homolog [Methanosarcina mazei Go1] Length = 141 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308 +G +G G + V L D+ I++V +S D TF+ NA P V+ V L G+ Sbjct: 44 MGLAIGKNGENINRVKKAL-DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTNKNGKRLA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLT 335 V VP ++ LAIGR G+N+ L Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKMLA 129 >gi|161484938|ref|NP_616199.2| transcription elongation factor NusA-like protein [Methanosarcina acetivorans C2A] Length = 141 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308 +G +G G + V L D+ I++V +S D TF+ NA P V+ V L G+ Sbjct: 44 MGLAIGKNGENINRVKKAL-DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRLA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLT 335 V VP ++ LAIGR G+N+ L Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKMLA 129 >gi|52696033|pdb|1U9L|A Chain A, Structural Basis For A Nusa- Protein N Interaction gi|52696034|pdb|1U9L|B Chain B, Structural Basis For A Nusa- Protein N Interaction Length = 70 Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 66 >gi|19915104|gb|AAM04679.1| transcription termination factor NusA [Methanosarcina acetivorans C2A] Length = 149 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308 +G +G G + V L D+ I++V +S D TF+ NA P V+ V L G+ Sbjct: 52 MGLAIGKNGENINRVKKAL-DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRLA 110 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLT 335 V VP ++ LAIGR G+N+ L Sbjct: 111 YVEVPNKEKGLAIGRNGKNIEKVKMLA 137 >gi|159163264|pdb|1WCL|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of Escherichia Coli Nusa Length = 76 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 9 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 67 >gi|294507814|ref|YP_003571872.1| 30S ribosomal protein S1 [Salinibacter ruber M8] gi|294344142|emb|CBH24920.1| 30S ribosomal protein S1 [Salinibacter ruber M8] Length = 876 Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 13/82 (15%) Query: 131 YLEFKDKVGE---------IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 Y +F+D V E I+ G V RV V++D+G SDG++ RDE E + PGD Sbjct: 179 YDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVVIDIGYKSDGIVSRDE-FGEEEIHPGD 237 Query: 181 RVKSYIYDVRREQRGPQVLLSR 202 V+ Y+ R+E R Q++LS+ Sbjct: 238 TVEVYLE--RKEDRDGQLVLSK 257 >gi|83814780|ref|YP_445904.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855] gi|83756174|gb|ABC44287.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855] Length = 871 Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 13/82 (15%) Query: 131 YLEFKDKVGE---------IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 Y +F+D V E I+ G V RV V++D+G SDG++ RDE E + PGD Sbjct: 179 YDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVVIDIGYKSDGIVSRDE-FGEEEIHPGD 237 Query: 181 RVKSYIYDVRREQRGPQVLLSR 202 V+ Y+ R+E R Q++LS+ Sbjct: 238 TVEVYLE--RKEDRDGQLVLSK 257 >gi|260437065|ref|ZP_05790881.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio crossotus DSM 2876] gi|292810374|gb|EFF69579.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio crossotus DSM 2876] Length = 367 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 11/98 (11%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS-- 172 KQ+++ K + R+ + K VG++++GTVK V V +D+G DG++ E IS Sbjct: 177 KQLLVAK---KAKMREEVMSKIAVGQVVTGTVKNVTDFGVFIDIGGVDGLLHVSE-ISWG 232 Query: 173 -----RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 ++ +PGD VK+YI D+ ++ + +P Sbjct: 233 RIENPKKKFKPGDEVKAYIKDINNDKIALSLKFDNENP 270 >gi|254669624|emb|CBA03668.1| N utilization substance protein A [Neisseria meningitidis alpha153] Length = 136 Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVENYT 76 +V + E+YT Sbjct: 69 LIVAD-EDYT 77 >gi|73671117|ref|YP_307132.1| transcription elongation factor NusA-like protein [Methanosarcina barkeri str. Fusaro] gi|72398279|gb|AAZ72552.1| transcription termination factor NusA [Methanosarcina barkeri str. Fusaro] Length = 141 Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 +G +G G + V L D+ I++V +S + TF+ NA P V+ V +++++ R+ Sbjct: 44 MGLAIGRNGENINRVKKAL-DKPIELVEYSDEPVTFLKNAFGPVSVSSVNIINKNGKRLA 102 Query: 310 VI-VPKEQLSLAIGRRGQNVRLASQLT 335 + VP ++ LAIGR G+N+ L Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKMLA 129 >gi|27375699|ref|NP_767228.1| hypothetical protein blr0588 [Bradyrhizobium japonicum USDA 110] gi|27348837|dbj|BAC45853.1| blr0588 [Bradyrhizobium japonicum USDA 110] Length = 226 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%) Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL------AVF 242 R + R + +L+RT PQF LF P Y + + A+ + G + + +F Sbjct: 14 ARSKVRSGRTILTRTAPQF---LFDFGSPNAYLSHLAIPAIEQRIGVKFEYVPILLGGIF 70 Query: 243 SSDSSIDPVGACVGMRGSR-VQAVVTE--LRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 S ++ P G++ R QAV TE ++ K+ VW+P +N +R AI ++ Sbjct: 71 KSTNNKSPAETLAGVKNKREFQAVETERFIKRFKVQPYVWNPHFPVNTLNLMRAAIAAQL 130 >gi|119719200|ref|YP_919695.1| NusA family protein [Thermofilum pendens Hrk 5] gi|119524320|gb|ABL77692.1| NusA family KH domain protein [Thermofilum pendens Hrk 5] Length = 149 Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 +F D P+ VG GS+++ ++ EL + +++V FV + PA V +V Sbjct: 41 IFLVDKGFAPL--AVGKNGSKIR-MIKELLRKDVEVVEDGSSLEDFVKSVFFPARVVEVK 97 Query: 301 LDEDVGRIEVI--VPKEQLSLAIGRRGQNVRLASQL 334 + E+ R VI VP +QL LAIGR G+NV+ A L Sbjct: 98 VREENNRKVVIAVVPPDQLGLAIGRNGRNVQRAKIL 133 >gi|15791386|ref|NP_281210.1| transcription elongation factor NusA-like protein [Halobacterium sp. NRC-1] gi|169237147|ref|YP_001690347.1| transcription elongation factor NusA-like protein [Halobacterium salinarum R1] gi|139955|sp|P15739|NUSA_HALSA RecName: Full=NusA protein homolog gi|43544|emb|CAA40428.1| ORF 139 [Halobacterium salinarum] gi|10582041|gb|AAG20690.1| transcription termination-antitermination factor [Halobacterium sp. NRC-1] gi|167728213|emb|CAP15001.1| putative transcription termination factor nusA [Halobacterium salinarum R1] Length = 139 Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +GA +G GSRV A+ L + +V +P + FV NAL PA V V + E+ + Sbjct: 43 MGAAIGDGGSRVDALEATLG-RSVVLVEDAPTAEGFVANALSPAAVYNVTVSENDTTVAY 101 Query: 311 I-VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V E +AIG G N+ A +L DI Sbjct: 102 AEVAHEDKGVAIGADGTNIETAKELAARHFDI 133 >gi|307353872|ref|YP_003894923.1| NusA family KH domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157105|gb|ADN36485.1| NusA family KH domain protein [Methanoplanus petrolearius DSM 11571] Length = 156 Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 I+P +G +G G ++ EL +KI++V +S D F+ N PA V V + E+ Sbjct: 41 INPGDMGRAIGKSGVSIKKASDEL-GKKIEVVEFSNDPVQFIKNCFLPARVISVDIRENA 99 Query: 306 -GRIEVIV--PKEQLSLAIGRRGQNVRLASQLTG-----WTIDIITEEED 347 G E V +E + +AIG+ G+N+ A++L + IIT ED Sbjct: 100 EGEFEAFVDVEEEDMGIAIGKGGKNIFKANKLAERQHDIANVQIITNAED 149 >gi|23008735|ref|ZP_00050053.1| hypothetical protein Magn03003752 [Magnetospirillum magnetotacticum MS-1] Length = 97 Score = 43.5 bits (101), Expect = 0.096, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 GC+ DDL+G++E +G + GFL + + E++I+ AR GWIE Sbjct: 3 GCANDDLVGYTEGRGPEAVRHAGFLDGFELSRAEAEALIMAARVHAGWIE 52 >gi|160880581|ref|YP_001559549.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium phytofermentans ISDg] gi|160429247|gb|ABX42810.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium phytofermentans ISDg] Length = 643 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 13/98 (13%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET---- 170 KQ+++ K +E + L K KVG+++ GTVK V +DLG +DG++ E Sbjct: 456 KQLLVAKKQELSK---ALFAKIKVGDVVEGTVKNVTDFGAFIDLGGADGLLHISEMSWGR 512 Query: 171 --ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + GD VK++I D+ +G ++ LS P+ Sbjct: 513 IESPKKVFKVGDTVKAFIKDI----QGEKIALSLKFPE 546 >gi|315230009|ref|YP_004070445.1| NusA-like protein [Thermococcus barophilus MP] gi|315183037|gb|ADT83222.1| NusA-like protein [Thermococcus barophilus MP] Length = 145 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 A V ++D+D R+ ++ K ++ LA+G+RG NVR + G ID+I E+ Sbjct: 22 ATVLDCIIDQDRNRLIYVIKKGEMGLALGKRGMNVRRIQSMLGKEIDLIEHSEN 75 >gi|327401229|ref|YP_004342068.1| NusA family KH domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316737|gb|AEA47353.1| NusA family KH domain protein [Archaeoglobus veneficus SNP6] Length = 139 Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308 +GA +G G ++ EL ++I+++ S D A F++N +P I KV L E G+ Sbjct: 43 MGAAIGKGGINIERA-RELMGKRIEVIEHSDDPAEFIVNIFKP-IKVKVKLIEKGGKKIA 100 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +V V + LAIG+ G+N+ A +L DI Sbjct: 101 QVGVDPQYKGLAIGKGGKNINKAKELARRHHDI 133 >gi|154151469|ref|YP_001405087.1| NusA family protein [Candidatus Methanoregula boonei 6A8] gi|154000021|gb|ABS56444.1| NusA family KH domain protein [Methanoregula boonei 6A8] Length = 154 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRI 308 +G +G +G+ ++ +E +KI++V ++ +S F+ N PA VT +V + D Sbjct: 46 MGLAIGKKGASIKKA-SEAMGKKIEVVEYNSNSEQFLKNCFLPAQVTSIVFSGEPDAQSA 104 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLT 335 V V E +AIG+ G+N+ A +L Sbjct: 105 TVEVRDEDRGIAIGKDGKNIFKAKKLA 131 >gi|330507368|ref|YP_004383796.1| NusA protein-like protein [Methanosaeta concilii GP-6] gi|328928176|gb|AEB67978.1| NusA protein-like protein [Methanosaeta concilii GP-6] Length = 143 Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 +GA +G +GS + V + ++I+IV +S D F+ N +PA + V V++++ R+ Sbjct: 46 MGAAIGRKGSNINRVKKSV-GKQIEIVEYSEDVKEFLENLFQPAAIKNVMVVNKNSKRLA 104 Query: 310 VI-VPKEQLSLAIGRRGQNVRLASQLT 335 + V + +AIGR G+N+ A L Sbjct: 105 YVEVANKDKGIAIGRDGRNILKAKMLA 131 >gi|171186409|ref|YP_001795328.1| transcription elongation factor NusA-like protein [Thermoproteus neutrophilus V24Sta] gi|170935621|gb|ACB40882.1| NusA family KH domain protein [Thermoproteus neutrophilus V24Sta] Length = 144 Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 VV+D D RI +V K Q +LA+GR G NV++ Q+ G ++I+ Sbjct: 28 VVIDGDYSRIIFVVQKNQAALAVGRGGANVKMLKQIVGKDVEIV 71 >gi|269926456|ref|YP_003323079.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 431 Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 9/118 (7%) Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE---- 169 ++++ Q+ +E ++R E ++ G+I+ G V + VD+G +DG+I E Sbjct: 237 SERIATQERKETSKERLIEELRE--GQIVKGRVTSLADFGAFVDIGGADGLIHLSEISWG 294 Query: 170 --TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ-FMVKLFHMEVPEIYNGIV 224 E L+PGD V + ++ RE + + + RT P+ + + +V +I G V Sbjct: 295 RINHPSEVLKPGDEVDVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEV 352 >gi|213425432|ref|ZP_03358182.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 62 Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR+ Sbjct: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRV 61 >gi|119872213|ref|YP_930220.1| transcription elongation factor NusA-like protein [Pyrobaculum islandicum DSM 4184] gi|119673621|gb|ABL87877.1| NusA family KH domain protein [Pyrobaculum islandicum DSM 4184] Length = 144 Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 VVLD + RI +V K Q +LA+GR G NV++ Q+ G ++I+ Sbjct: 28 VVLDNEYSRIIFVVQKNQAALAVGRGGSNVKMLKQILGKDVEIV 71 >gi|116753357|ref|YP_842475.1| NusA family protein [Methanosaeta thermophila PT] gi|116664808|gb|ABK13835.1| NusA family KH domain protein [Methanosaeta thermophila PT] Length = 143 Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 +GA +G +GS + V + ++I+IV +S D F+ N +PA V + V++++ R+ Sbjct: 46 MGAAIGRKGSNINRVKKSI-GKQIEIVEYSDDVKEFLQNLFQPADVKNIMVVNKNNKRLA 104 Query: 310 VI-VPKEQLSLAIGRRGQNVRLASQLT 335 + V + +AIGR G+N+ A L Sbjct: 105 YVEVANKDKGIAIGRDGRNILKAKMLA 131 >gi|327311712|ref|YP_004338609.1| transcription elongation factor NusA-like protein [Thermoproteus uzoniensis 768-20] gi|326948191|gb|AEA13297.1| transcription elongation factor NusA-like protein [Thermoproteus uzoniensis 768-20] Length = 144 Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VV+D D RI +V K Q +LA+G+ G NVR+ Q+ G ++++ E Sbjct: 28 VVVDSDYNRIIFVVGKNQAALAVGKGGNNVRMLRQIIGRDVEVVEYAE 75 >gi|148717938|ref|YP_001285409.1| polyprotein [Brevicoryne brassicae picorna-like virus] gi|145307685|gb|ABP57198.1| polyprotein [Brevicoryne brassicae picorna-like virus] Length = 2983 Score = 40.4 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 31/134 (23%) Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVS----------------DPL 101 D SL LL + VE + K A+ DP D GG V DPL Sbjct: 1848 ADTSL--LLPGAKTVEENAAVVDEKAAQVSDPESDTGGAVVFEVPDTLTNEQLIAAFDPL 1905 Query: 102 PP-----MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVE----- 150 P D R ++ + +K++E + + +EF+DK+G+ IS TV +R++ Sbjct: 1906 TPEELAEFDRSRQDMREMENETNRKIKEVIKKSKLMEFEDKIGQDISRTVPERIQFLCKF 1965 Query: 151 --YGNVIVDLGNSD 162 + + I+ +G +D Sbjct: 1966 SSFASYILRMGTAD 1979 >gi|126178254|ref|YP_001046219.1| NusA family protein [Methanoculleus marisnigri JR1] gi|126178267|ref|YP_001046232.1| NusA family protein [Methanoculleus marisnigri JR1] gi|125861048|gb|ABN56237.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] gi|125861061|gb|ABN56250.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] Length = 149 Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 6/99 (6%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--E 303 I+P +G +G GS ++ +++ ++I++V +S D + F+ N PA VT + D E Sbjct: 41 INPGDMGLAIGKSGSSIKKA-SDVMGKRIEVVEYSADPSQFLRNCFLPAQVTGIDFDTDE 99 Query: 304 DVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +I +I V E LAIG+ G+N+ A L DI Sbjct: 100 EDQQIALIDVRDEDRGLAIGKAGKNIFKAKVLAQRQHDI 138 >gi|217033178|ref|ZP_03438631.1| hypothetical protein HPB128_184g1 [Helicobacter pylori B128] gi|216945087|gb|EEC23794.1| hypothetical protein HPB128_184g1 [Helicobacter pylori B128] Length = 108 Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 17/101 (16%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAI--NVDEIIAHL-------LVAEGFADVEELACVKI 392 + E ++ I+R + F + Q ++ I N+DEI+ H+ L+++ F V +LACV Sbjct: 5 MDERQEKIDRTQHFITKAQSKIKEIESNIDEILKHIQTMEPNHLLSQDFLYVGKLACVNK 64 Query: 393 SEIASIEGFDEETAVEIQGR-------AREYLEGIDITLQK 426 SEI + +G DEE+ I G+ E GI ITL++ Sbjct: 65 SEIYAHDG-DEESGWNIYGQRLSLESGEHEKSYGILITLKR 104 >gi|20094120|ref|NP_613967.1| transcription elongation factor NusA-like protein [Methanopyrus kandleri AV19] gi|19887121|gb|AAM01897.1| Transcription elongation factor NusA [Methanopyrus kandleri AV19] Length = 142 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +L A V V+D++ R +V + Q+ LAIG++GQNVR + G ++++ ED Sbjct: 18 SLTGAHVLDCVIDDEHNRAIFVVKEGQIGLAIGKKGQNVRRVQEQLGMDVEVVEHSED 75 >gi|14591325|ref|NP_143403.1| transcription elongation factor NusA-like protein [Pyrococcus horikoshii OT3] gi|3257970|dbj|BAA30653.1| 145aa long hypothetical transcription termination-antitermination factor nusA [Pyrococcus horikoshii OT3] Length = 145 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 A V ++D++ R+ ++ K ++ LA+G+RG NVR L G ID+I E+ Sbjct: 22 ATVLDCLIDQERNRLIYVIKKGEMGLALGKRGINVRRVESLLGKEIDLIEHSEN 75 >gi|154483595|ref|ZP_02026043.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC 27560] gi|149735505|gb|EDM51391.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC 27560] Length = 365 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI--- 171 KQ+I V E E ++ L K +VG+ ++G VK V +D+G +DG++ E Sbjct: 172 KQLI---VAEKEAAKKALFEKIEVGQTVTGVVKSVVDFGAFIDIGGADGLLHISEMSWGR 228 Query: 172 ---SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 R+ +PGD V ++I ++ ++ + T+P Sbjct: 229 VGNPRKLFKPGDEVTAFIKEINGDKIALSLKFEDTNP 265 >gi|14520834|ref|NP_126309.1| transcription elongation factor NusA-like protein [Pyrococcus abyssi GE5] gi|5458050|emb|CAB49540.1| nusA transcription termination-antitermination factor nusA, putative [Pyrococcus abyssi GE5] Length = 145 Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 A V ++D++ R+ ++ K ++ LA+G+RG NVR L G ID++ E+ Sbjct: 22 ATVLDCLIDQERNRLIYVIKKGEMGLALGKRGINVRRVENLLGKEIDLVEHSEN 75 >gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium HF0200_09I09] Length = 677 Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%) Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR 173 +++ +Q+ R +++R E + GE+ GTV + V VDLG +DG+ E Sbjct: 260 SERAAMQEWRAEQKERLLGELAE--GEVRKGTVTSIRNFGVFVDLGGADGLAHLSELSWD 317 Query: 174 ENLRP------GDRVKSYIYDVRREQRGPQVLLSRTHP---QFMVKLFHME--VPEIYNG 222 N P G + YI + R+ + + + R P Q ++ + + VP I Sbjct: 318 RNADPEQLFQVGQDIDVYIMRIDRDSKKIALSVRRAAPEQWQDLISQYEVGDVVPGIVTK 377 Query: 223 IVQVKAVSRDPGSRAKLAVFS 243 +V A +R PG LA S Sbjct: 378 VVAFGAFTRLPGPVEGLAHVS 398 >gi|225374882|ref|ZP_03752103.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM 16841] gi|225213265|gb|EEG95619.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM 16841] Length = 365 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 13/97 (13%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET---- 170 KQ++++K E +++ L K KVG+++ GTVK V +DLG +DG++ E Sbjct: 173 KQLLVEKKLEQQKE---LFAKIKVGDVMEGTVKNVTDFGAFIDLGGADGLLHISEMSWGR 229 Query: 171 --ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 ++ GD VK +I D+ ++ LS P Sbjct: 230 VESPKKVFNVGDTVKVFIKDI----NDTKIALSMKFP 262 >gi|139956|sp|P15738|NUSA_HALMO RecName: Full=NusA protein homolog gi|43623|emb|CAA40433.1| ORF 139 [Halococcus morrhuae] Length = 139 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI-VP 313 +G G+ V+ V L D+++ +V + + FV NAL PA+V V + E+ + V Sbjct: 47 IGPDGTTVEQVEERL-DKRVSLVENADTAELFVANALAPAVVHNVTISENASTVAYAEVD 105 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +AIGR G+ + A +L DI Sbjct: 106 RADTGVAIGRDGETIETARRLAERQFDI 133 >gi|71424023|ref|XP_812653.1| surface protease GP63 [Trypanosoma cruzi strain CL Brener] gi|70877461|gb|EAN90802.1| surface protease GP63, putative [Trypanosoma cruzi] Length = 566 Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 127/311 (40%), Gaps = 48/311 (15%) Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAV---FSSDSSIDPVGACVGMRGSRV----QAVVT 267 EVP G VQ + + G + S++ DP+ C R+ +A+ Sbjct: 56 EVPRRGQGAVQAYTAASEDGDGGWAPIRIKVSAEDMHDPLRHCTAAGDLRINHFGRAITC 115 Query: 268 E----LRDEKIDIVVWSPDSATFVINA----LRPAIVTKVVLDEDVGRIE-VIVPKEQLS 318 E L +E+ +IV+ A ++A +RP V+ D+G E +P + + Sbjct: 116 EADDVLTEERRNIVLRQILPAAIQLHAERLSVRPVTRPIVIPQTDLGMCENFTIPHKHHT 175 Query: 319 LAIGRRGQ----NVRLASQLTGWTID-IITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 + + N+ S T W I + ++ +F+ R Q + + NV Sbjct: 176 VGVAGTDMILYANIFPTSGPTAWAIPCFLLDDGRPFAAAVNFDPR-QVAVTSRNVRVAAH 234 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAV---EIQGRAREY-----LEGIDI--- 422 L A GFAD + L ISE+ ++ G + + + + + AR+Y LEGI++ Sbjct: 235 ELGHALGFADTQFLLLHMISEVPNVRGRLKVSVLSTPKTKAMARQYHNCPTLEGIELEDE 294 Query: 423 ----TLQKKIRELGVSEELCSIPGIDSKIKVALGEN-GIKTMEDL----AGCSVDDLLGW 473 TL ++ + +E+ + S + V L + ED+ A S ++L W Sbjct: 295 GGSDTLLSHWKKRNMKDEM-----MTSDVGVGLYSALTLAAFEDMGVYVANYSAAEMLWW 349 Query: 474 SENKG-GNIEK 483 N G G +EK Sbjct: 350 GNNSGCGLLEK 360 >gi|260590941|ref|ZP_05856399.1| ribosomal protein S1 [Prevotella veroralis F0319] gi|260536806|gb|EEX19423.1| ribosomal protein S1 [Prevotella veroralis F0319] Length = 591 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 14/107 (13%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERD---RQYLEFKDKVGE--IISGTVKRVEYGNVIV 156 P DF ++ Q EA +D + Y E +K+ E ++ GTV + V+V Sbjct: 12 PLADFNWDEFENGTQT------EASKDDLAKAYNETLNKIQEHQVVEGTVISADKKEVVV 65 Query: 157 DLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 ++G SDG+I E +L+PGD+V+ Y+ + + ++RG Q++LS Sbjct: 66 NIGYKSDGIIPASEFRYNPDLKPGDKVEVYV-ESQEDKRG-QLVLSH 110 >gi|325270523|ref|ZP_08137123.1| 30S ribosomal protein S1 [Prevotella multiformis DSM 16608] gi|324987099|gb|EGC19082.1| 30S ribosomal protein S1 [Prevotella multiformis DSM 16608] Length = 593 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 8/85 (9%) Query: 124 EAERD---RQYLEFKDKVGE--IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR 177 EA +D + Y E +K+ E ++ GTV V+ V+V++G SDG+I E L+ Sbjct: 28 EASKDDLTKAYDETLNKIQEHQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRYNPELK 87 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSR 202 PGD+V+ Y+ + + ++RG Q++LS Sbjct: 88 PGDKVEVYVEN-QEDKRG-QLVLSH 110 >gi|291563829|emb|CBL42645.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4] Length = 359 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 9/97 (9%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI--- 171 KQ+I+ K +AE + E K VG+ + GTVK V +DLG +DG++ E Sbjct: 173 KQLIVAK--KAEMQKALFE-KIHVGDKVEGTVKNVTDFGAFIDLGGADGLLHISEMSWGR 229 Query: 172 ---SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 ++ + GD+V + I D+ E+ + T+P Sbjct: 230 IENPKKVFKVGDKVTALIKDINGEKIALSMKFPETNP 266 >gi|325298110|ref|YP_004258027.1| RNA binding S1 domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317663|gb|ADY35554.1| RNA binding S1 domain protein [Bacteroides salanitronis DSM 18170] Length = 596 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%) Query: 97 VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNV 154 + D P DF A +S + + + E+++ Y +KVG E++ GTV + V Sbjct: 4 LKDVKPIEDFNWDAYESGESA--SSISKEEQEKAYDNTLNKVGDHEVVDGTVIAMNKREV 61 Query: 155 IVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 +V++G SDG+I E +L+ GD V+ YI + +E + Q++LS Sbjct: 62 VVNIGYKSDGIIPLSEFRYNPDLKVGDTVEVYIEN--QEDKKGQLILSH 108 >gi|57640090|ref|YP_182568.1| RecJ-like exonuclease [Thermococcus kodakarensis KOD1] gi|57158414|dbj|BAD84344.1| RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains [Thermococcus kodakarensis KOD1] Length = 741 Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%) Query: 90 SIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 + DI G + P P M+ V ++ + + + D + +E VG + GT+ R Sbjct: 87 ACDICGKIKGPWEPGMETTWVCPDCLRKYKVVYILDKTCDYEDVE----VGSLYKGTIDR 142 Query: 149 VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 VE V V L + G+I+R + + +PGD + + DVR ++R Sbjct: 143 VERFGVFVKLNPHVTGLIKRKDLLGGREYKPGDEIVVQVLDVRPDKR 189 >gi|126179721|ref|YP_001047686.1| NusA family protein [Methanoculleus marisnigri JR1] gi|125862515|gb|ABN57704.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] Length = 146 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +G +G +GS ++ + L ++I++V +SP F N +PA V V D G++ V Sbjct: 45 MGLAIGRKGSNIRKMQRVL-GKRIEMVEYSPQIEQFAKNVFKPADVVGVA-KGDNGKLAV 102 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + + L +AIG+ G + A D Sbjct: 103 YINQNDLGIAIGKGGCTIEKARLFLARYFD 132 >gi|300727965|ref|ZP_07061343.1| hemin-binding protein [Prevotella bryantii B14] gi|299774807|gb|EFI71421.1| hemin-binding protein [Prevotella bryantii B14] Length = 593 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 5/87 (5%) Query: 119 IQKVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN 175 + V +A+ ++ Y E +K+ E++ GTV ++ VIV++G SDG+I E Sbjct: 23 VANVSKADLEKAYDETLNKIQEHEVVEGTVIALDKKEVIVNIGYKSDGIIPASEFRYNPE 82 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSR 202 L+ GD+V+ Y+ D +E + Q++LS Sbjct: 83 LKIGDKVEVYVED--QEDKKGQLVLSH 107 >gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50] gi|156865623|gb|EDO59054.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50] Length = 650 Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + + K++I++ R+A ++ E K +VG + GTVK V +DLG +DG++ Sbjct: 451 RRIIGNRKKLIVE--RKAAAAKELFE-KIEVGMTVEGTVKNVTDFGAFIDLGGADGLLHI 507 Query: 168 DET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 E ++ + GD VK++I D+ ++ + T+P Sbjct: 508 SEMSWGRVESPKKMFKVGDTVKAFIKDINGDKIALSLKFDETNP 551 >gi|256371862|ref|YP_003109686.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 427 Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 11/104 (10%) Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP------GDR 181 + +EF + G+I+SG V +V+ V++D+G S+GVI E R+++ P GDR Sbjct: 44 KSLVEFDE--GDIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRKDVSPADVVSVGDR 101 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +++E R +++LS+ QF +E + +G+V+ Sbjct: 102 IDALV--LQKEDREGRLVLSKKRAQFEKAWKEIEAIKARDGVVR 143 >gi|255526510|ref|ZP_05393420.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|296185879|ref|ZP_06854285.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7] gi|255509829|gb|EET86159.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|296049547|gb|EFG88975.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7] Length = 388 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 +I+K EAE +Q+L K GE SG V R+ VDLG DG+I E + Sbjct: 182 VIEKA-EAEEKKQHLLNSIKPGEKRSGVVSRLAKFGAFVDLGGVDGLIHVSELSWKRVNN 240 Query: 178 P------GDRVKSYIYDVRREQR 194 P GD+V+ YI V +E Sbjct: 241 PADVVSVGDKVEVYILSVDKENN 263 >gi|222479397|ref|YP_002565634.1| beta-lactamase domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222452299|gb|ACM56564.1| beta-lactamase domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 641 Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A VT + ED G EV++ E+ + IGRRG +R +Q GWT +++ Sbjct: 90 AGVTDLDFHEDTG--EVVIEAEKPGMVIGRRGSTLREITQKVGWTPEVV 136 >gi|163814142|ref|ZP_02205534.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759] gi|158450591|gb|EDP27586.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759] Length = 649 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + + KQ+I+ R+AE ++ + + +VG + G VK V +DLG +DG++ Sbjct: 450 RRIIGNRKQIIV--ARKAEAAKELFD-RIEVGMTVEGVVKNVTSFGAFIDLGGADGLLHI 506 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 E + L+ GD+VK++I ++ E+ + T+P Sbjct: 507 SEMSWGRVEDPKSVLKVGDKVKAFIKNIDGEKIALSLKFDDTNP 550 >gi|330996791|ref|ZP_08320663.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841] gi|329572513|gb|EGG54164.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841] Length = 597 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG 159 P DF A +S ++ + REA+ ++ Y +KV E++ GTV + V+V++G Sbjct: 9 PLADFDWNAYESG-DTLVNESREAQ-EKAYEGSLNKVNDHEVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 SDG+I E +L+ GD+V+ YI + +E + Q++LS Sbjct: 67 FKSDGIIPMSEFRYNPDLKVGDKVEVYIEN--QEDKKGQLILSH 108 >gi|116753406|ref|YP_842524.1| beta-lactamase domain-containing protein [Methanosaeta thermophila PT] gi|116664857|gb|ABK13884.1| beta-lactamase domain protein [Methanosaeta thermophila PT] Length = 635 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 277 VVWSPDSATFVINALRP--AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 V+ P+ A I + P A++T D + G EVI+ E+ L IGR G +R ++L Sbjct: 70 VLMDPEEAIKKIQEVVPKEAVLTNYHFDGETG--EVIIEAEKPGLVIGRHGATLREITKL 127 Query: 335 TGWTIDII 342 GWT ++ Sbjct: 128 IGWTPKVV 135 >gi|325103294|ref|YP_004272948.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145] gi|324972142|gb|ADY51126.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145] Length = 1008 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 20/135 (14%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ-------VIIQKVREAERDRQYLEFKDKV 138 D P ID + L DF V + A Q +II+ V E +R+ + K + Sbjct: 610 DVKPVIDYDSYIGKTL---DFKIVKISEANQNTVVSRRLIIESVIEMQREE--ISKKLEK 664 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISRENLRPGD------RVKSYIYDVRR 191 G+I+ GT+K + Y +DLG DG++ D + R N P D ++ + D Sbjct: 665 GQILEGTIKNITYFGAFIDLGGIDGLLYITDISWGRIN-HPSDLLELNQKIHVVVLDYED 723 Query: 192 EQRGPQVLLSRTHPQ 206 ++ + L + HP Sbjct: 724 NKKRISLGLKQLHPN 738 >gi|207093316|ref|ZP_03241103.1| hypothetical protein HpylHP_11231 [Helicobacter pylori HPKX_438_AG0C1] Length = 246 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 10/70 (14%) Query: 347 DSINRQKDFNERTQFFMQA--INVDEIIAHL-------LVAEGFADVEELACVKISEIAS 397 D+I + KDF +TQ +++ ++DEI+ H+ L+ + F V +LACV SEI + Sbjct: 152 DNIRKAKDFIAKTQNWIKKKECDIDEILKHIQTMESNHLLPQDFLYVGKLACVNKSEIYA 211 Query: 398 IEGFDEETAV 407 +G DEE+ + Sbjct: 212 HDG-DEESNI 220 >gi|229825037|ref|ZP_04451106.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC 49176] gi|229790784|gb|EEP26898.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC 49176] Length = 647 Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI--- 171 KQ++ K E ++ L K VG+++ GTVK V +DLG +DG++ E Sbjct: 451 KQILTAKKNEL---KKALFEKLAVGQVVDGTVKNVTDFGAFIDLGGADGLLHISEMSWGH 507 Query: 172 ---SRENLRPGDRVKSYIYDVRREQ 193 ++ + GD VK+++ D++ E+ Sbjct: 508 IENPKKVFKVGDMVKTFVKDIQGEK 532 >gi|189219063|ref|YP_001939704.1| ribosomal protein S1 [Methylacidiphilum infernorum V4] gi|189185921|gb|ACD83106.1| Ribosomal protein S1 [Methylacidiphilum infernorum V4] Length = 449 Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 8/94 (8%) Query: 120 QKVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISREN- 175 +++ EAER+++ L+F +KV G+++ G VK V +DL DG+I D + R N Sbjct: 161 REIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGLIHITDMSWGRINH 220 Query: 176 ----LRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 L+ G ++ + DV RE+ + L + P Sbjct: 221 PSEILKVGQEIEVVVIDVDREKERVSLGLKQKTP 254 >gi|332157771|ref|YP_004423050.1| transcription elongation factor NusA-like protein [Pyrococcus sp. NA2] gi|331033234|gb|AEC51046.1| transcription elongation factor NusA-like protein [Pyrococcus sp. NA2] Length = 145 Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 A V ++D++ R+ ++ K ++ LA+G+RG NVR L G ID++ ++ Sbjct: 22 ATVLDCLIDQERNRLIYVIKKGEMGLALGKRGINVRRVENLIGKEIDLVEHSDN 75 >gi|253578799|ref|ZP_04856070.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849742|gb|EES77701.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 358 Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 13/105 (12%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + + KQ+++ +AE+ ++ +E K VG+ + GTVK V +DLG +DG++ Sbjct: 166 RRIIGNRKQLLL--AEKAEKQKELME-KIHVGDTVEGTVKNVTDFGAFIDLGGADGLLHI 222 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 E ++ GD+VK I +E G ++ LS P+ Sbjct: 223 SEMSWGRVENPKKVFTVGDKVKVLI----KEINGEKIALSLKFPE 263 >gi|311746070|ref|ZP_07719855.1| ribosomal protein S1 [Algoriphagus sp. PR1] gi|126576287|gb|EAZ80565.1| ribosomal protein S1 [Algoriphagus sp. PR1] Length = 590 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Query: 140 EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E+I GTV V +VI+++G SDG++ +E E+++PGD V+ +I + +E Q+ Sbjct: 44 EVIKGTVVGVNDKDVIINIGFKSDGLVPLNEFRDLESIKPGDEVEVFIEE--QENALGQL 101 Query: 199 LLSR 202 +LSR Sbjct: 102 ILSR 105 >gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] Length = 197 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 142 ISGTVKRVEYGNVIVD-LGNSDGVIRRDETISRENLRPGDRVKSYIY-DVRREQRGPQVL 199 ISG V+ +E V+VD G G+ T+ E + G++VK Y Y VR + Sbjct: 5 ISGVVEEIEKDKVVVDNNGIGYGIFASQSTL--EQIGIGEQVKIYTYFSVREDAMQLYGF 62 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 LSR Q L + G+ +S PG +AV + D+ + G+ Sbjct: 63 LSRQELQLFKLLIGVSGVGPKGGLA---ILSTCPGDSLSMAVLADDAK--AISKAPGIGA 117 Query: 260 SRVQAVVTELRDEKIDI 276 Q ++ EL+D KIDI Sbjct: 118 KTAQKIIIELKD-KIDI 133 >gi|315231394|ref|YP_004071830.1| hypothetical protein TERMP_01632 [Thermococcus barophilus MP] gi|315184422|gb|ADT84607.1| hypothetical protein TERMP_01632 [Thermococcus barophilus MP] Length = 742 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 90 SIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 + DI G V +P P M+ V + ++ I + + D + +E +G I G + R Sbjct: 87 ACDICGKVKEPWEPGMETTWVCPECERKFKIVYILDKTCDYEDVE----IGRIYKGVIDR 142 Query: 149 VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 VE V V L + G+I+R + + + +PG + + DVR E+R Sbjct: 143 VERFGVFVKLNPHVVGLIKRKDLLGGKEYKPGMEILVQVLDVRPEKR 189 >gi|84490157|ref|YP_448389.1| transcription elongation factor NusA-like protein [Methanosphaera stadtmanae DSM 3091] gi|84373476|gb|ABC57746.1| NusA [Methanosphaera stadtmanae DSM 3091] Length = 143 Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308 +G +G RGS + + ++ D+ I+I+ S D F+ N L A V + + +I Sbjct: 45 MGLAIGKRGSTIAKMQNKV-DKSIEIIEHSDDPGEFIKNLLSVAKVNSIEFSTNAKGNKI 103 Query: 309 EVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + IG+ GQN+R A Q DI Sbjct: 104 ATLDVDSKTKRSTIGKNGQNIRRARQFAKRQFDI 137 >gi|330508618|ref|YP_004385046.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP-6] gi|328929426|gb|AEB69228.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP-6] Length = 635 Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 277 VVWSPDSATFVINALRP--AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 V+ P+SA I + P A++T D + G EV + E+ L IGR G +R ++L Sbjct: 70 VLADPESAIIKIQEVVPKEAVLTNYHFDGETG--EVQIEAEKPGLVIGRHGATLREITKL 127 Query: 335 TGWTIDII 342 GWT ++ Sbjct: 128 IGWTPKVV 135 >gi|240146046|ref|ZP_04744647.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia intestinalis L1-82] gi|257201862|gb|EEV00147.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia intestinalis L1-82] gi|291539046|emb|CBL12157.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4] Length = 374 Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 DI V+S+ P R + KQ+++ K E +++ L K KVG+++ GTVK V Sbjct: 153 DIEFVISEFNPKR---RRIIGDRKQLLVAKKLEQQKE---LFAKIKVGDVMEGTVKNVTD 206 Query: 152 GNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 +DLG +DG++ E ++ GD V+ +I D+ ++ LS P Sbjct: 207 FGAFIDLGGADGLLHISEMSWGRVESPKKVFNVGDHVRVFIKDI----NDTKIALSMKFP 262 >gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saburreum DSM 3986] gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saburreum DSM 3986] Length = 368 Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 12/89 (13%) Query: 125 AERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENL 176 A+++ Q DK+ G++I GTVK V VDLG +DG++ E ++ Sbjct: 178 AKKEEQKKALFDKITPGDVIEGTVKNVTDFGAFVDLGGADGLLHISEMSWGRVENPKKVF 237 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 + G++V ++I D+ G ++ LS P Sbjct: 238 KSGEKVTAFIKDI----SGEKIALSMKFP 262 >gi|294673916|ref|YP_003574532.1| 30S ribosomal protein S1 [Prevotella ruminicola 23] gi|294472255|gb|ADE81644.1| ribosomal protein S1 [Prevotella ruminicola 23] Length = 592 Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 119 IQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN 175 + V + E D+ Y E +KV +++ GTV ++ V+V++G SDG+I E + Sbjct: 24 VANVSKEELDKAYDETLNKVADHQVVEGTVISIDKKEVVVNIGYKSDGIIPASEFRYNPD 83 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSR 202 L+ GD+V+ Y+ E + Q++LS Sbjct: 84 LKIGDKVEVYVESA--EDKKGQLILSH 108 >gi|125718044|ref|YP_001035177.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK36] gi|125497961|gb|ABN44627.1| 30S ribosomal protein S1, putative [Streptococcus sanguinis SK36] Length = 401 Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP------GDRVKSYIYD 188 K VG+I++G V R+ +DLG DG++ E N+ P GD ++ + D Sbjct: 190 KLNVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLD 249 Query: 189 VRREQRGPQVLLSRTHP 205 + E+ + L T P Sbjct: 250 LNEEEGRVSLSLKATTP 266 >gi|126460698|ref|YP_001056976.1| transcription elongation factor NusA-like protein [Pyrobaculum calidifontis JCM 11548] gi|126250419|gb|ABO09510.1| NusA family KH domain protein [Pyrobaculum calidifontis JCM 11548] Length = 144 Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 29/44 (65%) Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 VV+D + RI +V K Q +LA+G+ G NV++ Q+ G ++++ Sbjct: 28 VVVDHEYSRIIFVVQKNQAALAVGKGGANVKMLRQIIGKDVEVV 71 >gi|253734580|ref|ZP_04868745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|253727445|gb|EES96174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] Length = 73 Score = 37.4 bits (85), Expect = 6.8, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L Sbjct: 2 ELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA 61 Query: 454 NGIKTMEDLA 463 G+ T+EDLA Sbjct: 62 RGVCTLEDLA 71 >gi|315224362|ref|ZP_07866196.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287] gi|314945752|gb|EFS97767.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287] Length = 586 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 140 EIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E++ G V R+ I+D+ S+GVI +E NL+ GD+V+ I D+R ++ G Q+ Sbjct: 50 EVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNG-QL 107 Query: 199 LLSRTHPQFM-----VKLFHMEVPEIYNGIVQ 225 +LS + + + L H E EI NG V+ Sbjct: 108 VLSHRKARTLKAWDRINLAH-ENGEIVNGFVK 138 >gi|256818976|ref|YP_003140255.1| 30S ribosomal protein S1 [Capnocytophaga ochracea DSM 7271] gi|256580559|gb|ACU91694.1| RNA binding S1 domain protein [Capnocytophaga ochracea DSM 7271] Length = 586 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 140 EIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E++ G V R+ I+D+ S+GVI +E NL+ GD+V+ I D+R ++ G Q+ Sbjct: 50 EVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNG-QL 107 Query: 199 LLSRTHPQFM-----VKLFHMEVPEIYNGIVQ 225 +LS + + + L H E EI NG V+ Sbjct: 108 VLSHRKARTLKAWDRINLAH-ENGEIVNGFVK 138 >gi|332878224|ref|ZP_08445952.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683836|gb|EGJ56705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 586 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 140 EIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E++ G V R+ I+D+ S+GVI +E NL+ GD+V+ I D+R ++ G Q+ Sbjct: 50 EVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNG-QL 107 Query: 199 LLSRTHPQFM-----VKLFHMEVPEIYNGIVQ 225 +LS + + + L H E EI NG V+ Sbjct: 108 VLSHRKARTLKAWDRINLAH-ENGEIVNGFVK 138 >gi|124485200|ref|YP_001029816.1| aminotransferase, class I and II [Methanocorpusculum labreanum Z] gi|124362741|gb|ABN06549.1| NusA family KH domain protein [Methanocorpusculum labreanum Z] Length = 157 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL---- 301 I+P +G +G +G+ ++ ++ +K+++V ++PD F+ N P V V Sbjct: 41 INPGEMGLAIGKKGASIKKA-SDAFGKKVEVVEYNPDKVQFIRNCFLPVHVQTVTFEEDE 99 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +V IE V LAIG+ G+N+ A +L DI E Sbjct: 100 EENTEVAYIE--VADTDRGLAIGKEGRNIIKAKKLAFRQFDIANVE 143 >gi|213962551|ref|ZP_03390813.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno] gi|213954877|gb|EEB66197.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno] Length = 584 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Query: 140 EIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 E++ G V R+ I+D+ S+GVI +E NL+ GD+V+ I D+R ++ G V Sbjct: 50 EVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNGQLV 108 Query: 199 LLSRTHPQFM----VKLFHMEVPEIYNGIVQ 225 L R + L H E EI NG V+ Sbjct: 109 LSHRKARTLKAWDRINLAH-ENGEIVNGFVK 138 >gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 [Clostridium novyi NT] gi|118134043|gb|ABK61087.1| rpsA [Clostridium novyi NT] Length = 387 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 9/88 (10%) Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR-DE 169 V SAK+V +++E E +Q + K GE SG V+R+ VDLG DG+I D Sbjct: 176 VLSAKEV---ELKEIENKKQKVLASLKKGEKRSGVVRRLAKFGAFVDLGGVDGLIHNSDL 232 Query: 170 TISREN-----LRPGDRVKSYIYDVRRE 192 + R N ++ GD+V+ Y+ D ++ Sbjct: 233 SWERVNNPSDVVKVGDKVEVYVLDFHKD 260 >gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 696 Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 10/97 (10%) Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR 173 +++ ++QK + RD Y + K+ G+II GTV+R+ VD+G DG+I E +S Sbjct: 442 SRKNVLQKELDKVRDEVYDKLKE--GDIIEGTVQRLTNFGAFVDVGGVDGLIHISE-LSW 498 Query: 174 ENLR-------PGDRVKSYIYDVRREQRGPQVLLSRT 203 ++ PGD VK + +V +E+ + L +T Sbjct: 499 NRVKHPSDVVAPGDVVKVQVLNVDKEKNRIALGLKQT 535 >gi|153810812|ref|ZP_01963480.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174] gi|149833208|gb|EDM88290.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174] Length = 359 Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 13/105 (12%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + + KQ+++ +AE+ ++ +E K VG+ ++GTVK V +DLG +DG++ Sbjct: 166 RRIIGNRKQLLL--AEKAEKQKELME-KIHVGDTVTGTVKNVTDFGAFIDLGGADGLLHI 222 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 E ++ GD V+ I +E G ++ LS P+ Sbjct: 223 SEMSWGRVENPKKVFNVGDEVRVLI----KEINGDKIALSMKFPE 263 >gi|55379093|ref|YP_136943.1| transcription elongation factor NusA-like protein [Haloarcula marismortui ATCC 43049] gi|55231818|gb|AAV47237.1| transcription termination factor NusA [Haloarcula marismortui ATCC 43049] Length = 141 Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI-VPKEQLSLAIGRRGQNVRLA 331 ++ +V + + FV NAL PA V V + E+ + + V +E AIGR G+N+ A Sbjct: 66 EVKLVEAAETAEDFVANALAPAAVYNVTVSENDDTVAYVEVAQEDRGAAIGREGRNIDAA 125 Query: 332 SQLTGWTIDI 341 QL +I Sbjct: 126 RQLAKRHFEI 135 >gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332] gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332] Length = 486 Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 11/81 (13%) Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP------GDRVKSYI 186 F D G+II GTV +V++ V++D+G ++GVI E + ++ P GD+V++ + Sbjct: 34 FND--GDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALV 91 Query: 187 YDVRREQRGPQVLLSRTHPQF 207 +++E + ++LLS+ Q+ Sbjct: 92 --LQKEDKEGRLLLSKKRAQY 110 >gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 397 Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%) Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE---- 169 +++ +Q+ R+++++R LE + G +++G V ++ +DLG +DG+ E Sbjct: 187 SERAAMQRWRQSQKER-LLETLEP-GAVVTGRVNQLTPFGAFIDLGGADGLAHISELSWQ 244 Query: 170 --TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 RE L+PG V+ Y+ +V R++ + L R P Sbjct: 245 RVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQP 282 >gi|305663639|ref|YP_003859927.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230] gi|304378208|gb|ADM28047.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230] Length = 146 Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 9/91 (9%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 D +G +G +G V+ + ++L + ++IV W + FV N PA V ++ L E GR Sbjct: 47 DKLGQAIGRKGINVKYL-SKLIGKDVEIVGWGNNLEDFVKNIFMPARVQRIQLVE--GRD 103 Query: 309 EVIV-----PKEQLSLAIGRRGQNVRLASQL 334 + IV P+++ +AIG+ G+NV A L Sbjct: 104 KKIVYVYVDPRDK-GIAIGKNGRNVAKARLL 133 >gi|295109915|emb|CBL23868.1| Ribosomal protein S1 [Ruminococcus obeum A2-162] Length = 358 Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 13/105 (12%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + + KQ+++ +AE+ ++ +E + VG+ ++GTVK V +DLG +DG++ Sbjct: 166 RRIIGNRKQLLL--AEKAEKQKELME-RIHVGDTVTGTVKNVTDFGAFIDLGGADGLLHI 222 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 E ++ GD VK I +E G ++ LS P+ Sbjct: 223 SEMSWGRVENPKKVFNVGDEVKVLI----KEINGDKIALSMKFPE 263 >gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 13/101 (12%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + + K +++++ E ++D LE K KVG+II GT+K + VDLG DG++ Sbjct: 163 RRIIGNRKMILVERKSEIQKD--LLE-KLKVGDIIEGTIKNITDFGAFVDLGGIDGLLHI 219 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 E R+ D+V+ +I +E G ++ LSR Sbjct: 220 SEMSWGRVENPRKVFNVDDKVRVFI----KEINGTKIALSR 256 >gi|242399653|ref|YP_002995078.1| RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains [Thermococcus sibiricus MM 739] gi|242266047|gb|ACS90729.1| RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains [Thermococcus sibiricus MM 739] Length = 740 Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 90 SIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 + DI G + + P M+ V + K+ + + + D + +E VG++ G + R Sbjct: 87 ACDICGRIKESWEPGMETSWVCSECEKKYKVVYILDKTCDYEDVE----VGKVYKGAIDR 142 Query: 149 VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 VE V V L + G+I++ + + R +PG+ + + DVR E++ Sbjct: 143 VERFGVFVSLNPHVTGLIKKKDLLGRREYKPGEEILVQVLDVRPEKK 189 >gi|145592519|ref|YP_001154521.1| transcription elongation factor NusA-like protein [Pyrobaculum arsenaticum DSM 13514] gi|145284287|gb|ABP51869.1| NusA family KH domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 144 Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 VV+D R+ +V K Q +LA+G+ G NV++ Q+ G ++I+ Sbjct: 28 VVIDNAYSRVIYVVQKNQAALAVGKGGSNVKMLRQIVGKDVEIV 71 >gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus carboxydivorans Nor1] gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus carboxydivorans Nor1] Length = 655 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 109 VAVQSAKQVII---QKVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDG 163 + + AKQ I+ +KV E E+ R+ E ++ G+I++GTV R+ V VDLG DG Sbjct: 428 IEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLGGVDG 487 Query: 164 VIR 166 +I Sbjct: 488 LIH 490 >gi|325279173|ref|YP_004251715.1| RNA binding S1 domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324310982|gb|ADY31535.1| RNA binding S1 domain protein [Odoribacter splanchnicus DSM 20712] Length = 621 Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 7/81 (8%) Query: 129 RQYLEFKDKVGE--IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 ++Y E KVGE ++ GTV + V+V++G SDG+I +E L+ GD+V+ Y Sbjct: 53 QKYAETLSKVGEKEVVEGTVISMNKREVVVNIGYKSDGIISLNEFRYNPELKVGDKVEVY 112 Query: 186 IYDVRREQRGPQVLLSRTHPQ 206 + + + +++G L+ +H Q Sbjct: 113 V-ETQEDKKGQ---LTLSHKQ 129 >gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626] gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626] Length = 441 Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 R +D S +G + + MD R V +++V++++ R+AER Q + K KVG + G Sbjct: 155 RVKDLSTFMGTRIEARVIEMDRNRNNVVLSRRVVLEEARKAER--QDILGKLKVGMKLQG 212 Query: 145 TVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 TV VE+G VDLG DG++ E P + VK Sbjct: 213 TVSSIVEFG-AFVDLGGIDGLVHISELSWNHVNHPSEVVK 251 >gi|167751224|ref|ZP_02423351.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702] gi|167655731|gb|EDR99860.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702] Length = 658 Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query: 106 FGRVAVQSAKQVIIQKVREAER---DRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGN 160 F + V A+ ++ +R+A++ D +F + +VG+ +G VK +E V VDLG Sbjct: 448 FKVIEVTEARGRVVGSIRQAKKEANDAAKAKFWENIEVGQKFTGEVKSIESYGVFVDLGG 507 Query: 161 SDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 DG++ E RE ++ GD++ Y+ E++ Sbjct: 508 VDGMVHSSELTWNRIKHPREIVKIGDKLDVYVKSFDPEKK 547 >gi|257053759|ref|YP_003131592.1| beta-lactamase domain protein [Halorhabdus utahensis DSM 12940] gi|256692522|gb|ACV12859.1| beta-lactamase domain protein [Halorhabdus utahensis DSM 12940] Length = 641 Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A VT + ED G EV++ E+ + IGR G +R +Q GWT +++ Sbjct: 90 ASVTDLDFHEDTG--EVVIEAEKPGMVIGRHGSTLREITQKVGWTPEVV 136 Searching..................................................done Results from round 2 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] gi|254040465|gb|ACT57261.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 719 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 526/526 (100%), Positives = 526/526 (100%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI Sbjct: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ Sbjct: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD Sbjct: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA Sbjct: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV Sbjct: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ Sbjct: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI Sbjct: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN Sbjct: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS Sbjct: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 >gi|225626528|ref|ZP_03784567.1| transcription termination factor NusA [Brucella ceti str. Cudo] gi|225618185|gb|EEH15228.1| transcription termination factor NusA [Brucella ceti str. Cudo] Length = 575 Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 562 >gi|237816502|ref|ZP_04595495.1| transcription termination factor NusA [Brucella abortus str. 2308 A] gi|237788569|gb|EEP62784.1| transcription termination factor NusA [Brucella abortus str. 2308 A] Length = 575 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 562 >gi|294851387|ref|ZP_06792060.1| N utilization substance protein A [Brucella sp. NVSL 07-0026] gi|294819976|gb|EFG36975.1| N utilization substance protein A [Brucella sp. NVSL 07-0026] Length = 591 Score = 717 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 339/522 (64%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 57 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 116 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 117 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 176 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 177 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 236 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 237 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 296 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+ ++NAL+PA V KVVL Sbjct: 297 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASVIVNALQPAEVAKVVL 356 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 357 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 416 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFD++TA EIQ RAREYLE I+ Sbjct: 417 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDKDTAGEIQDRAREYLERIE 476 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 477 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 536 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 537 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 578 >gi|86355778|ref|YP_467670.1| transcription elongation factor NusA [Rhizobium etli CFN 42] gi|86279880|gb|ABC88943.1| N-utilization substance protein A [Rhizobium etli CFN 42] Length = 533 Score = 714 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 354/518 (68%), Positives = 431/518 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDE+TA EIQ RAREYLE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDEKRKALGVKDELRQIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDLSRVEAEQMIVQARLAAGWITEEDLAK 520 >gi|190889787|ref|YP_001976329.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CIAT 652] gi|190695066|gb|ACE89151.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CIAT 652] gi|327192408|gb|EGE59368.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CNPAF512] Length = 533 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 352/518 (67%), Positives = 431/518 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDEKRKALGVEDELRGIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLAK 520 >gi|319898339|ref|YP_004158432.1| transcription elongation protein [Bartonella clarridgeiae 73] gi|319402303|emb|CBI75842.1| transcription elongation protein [Bartonella clarridgeiae 73] Length = 536 Score = 712 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 328/524 (62%), Positives = 423/524 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKKDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDVGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA+EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVDLEEITSIDGFDHDTALEIQNRAREYLECKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL ++PG+ + + VALGE+GIKTMED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKKLGVSDELQTLPGMTNAMLVALGEDGIKTMEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + F G L++ + E+M++ AR + GWI + + V+DA Sbjct: 483 QTFPGILTAFDITRADAETMVLAARVQAGWINQTDLPQHPVEDA 526 >gi|90420533|ref|ZP_01228440.1| transcription termination/elongation factor nusA [Aurantimonas manganoxydans SI85-9A1] gi|90335261|gb|EAS49014.1| transcription termination/elongation factor nusA [Aurantimonas manganoxydans SI85-9A1] Length = 537 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 337/517 (65%), Positives = 420/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++V+ MAD+IQKAARS YG ++IRV+IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVIGAMADAIQKAARSRYGQETNIRVDINQKTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV+EVE+ QI L +ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDEVEDPNTQIYLDLARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE R GDR Sbjct: 123 VRDAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEQIPRELFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +KAV+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 TSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFLVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERSET 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGFA VEE+A V E+A+IEGFD+ETA EIQ RARE+LE + Sbjct: 363 FMNALNVDEMVGQVLASEGFATVEEIAYVDQDEVAAIEGFDDETASEIQERAREFLERRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K ELGVS++L I G+ + + VALGE+G+KTMED AGC+ DDL+GW+E K G Sbjct: 423 AEFDAKRVELGVSDDLRQINGVTTPMLVALGEDGVKTMEDFAGCAADDLIGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +F G LS+ + + M++ AR GWI + +A Sbjct: 483 TRFPGALSAFDVSRADADQMVLQARLIAGWITEADLA 519 >gi|114705359|ref|ZP_01438267.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506] gi|114540144|gb|EAU43264.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506] Length = 533 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 338/517 (65%), Positives = 422/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR++V+ MAD+IQKAARS YG ++IR +IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKTIDREIVIEAMADAIQKAARSRYGQETNIRCDINTKTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+VE+ QI L++ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEDVEDPATQIYLELARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERD QY E+KD+VGEII+G VKRVEYGNVIVDLG + +IRRDE I RE RPGDR Sbjct: 123 VREAERDMQYDEYKDRVGEIINGQVKRVEYGNVIVDLGKGEAIIRRDEQIPRELYRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRRE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITLKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESERRQKEFNERSEI 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGFA VEE+A V E++SIEGFDE+TA E+Q RARE+LE + Sbjct: 363 FMEALNVDEMVGQLLASEGFATVEEVAYVDAEEVSSIEGFDEDTAEELQSRAREFLERRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K ELGV++EL IPG+ +++ VALGE+G KT+ED AG +VDDL GW+E G Sbjct: 423 AEFDAKRVELGVADELKQIPGLTTEMLVALGEDGTKTIEDFAGYAVDDLCGWTERSKGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++F+G LS + E M+++AR K GWI +E +A Sbjct: 483 KRFEGTLSKFDVSRADAEQMVLNARLKAGWITEEDLA 519 >gi|116249893|ref|YP_765731.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. viciae 3841] gi|115254541|emb|CAK05615.1| putative transcription elongation protein (N utilization substance protein A) (L factor) [Rhizobium leguminosarum bv. viciae 3841] Length = 533 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 354/518 (68%), Positives = 431/518 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDLAK 520 >gi|209551640|ref|YP_002283557.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537396|gb|ACI57331.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 535 Score = 709 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 355/518 (68%), Positives = 431/518 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I GI +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGITAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITEEDLAK 520 >gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. 16M] gi|23503011|ref|NP_699138.1| transcription elongation factor NusA [Brucella suis 1330] gi|62291000|ref|YP_222793.1| transcription elongation factor NusA [Brucella abortus bv. 1 str. 9-941] gi|82700909|ref|YP_415483.1| transcription elongation factor NusA [Brucella melitensis biovar Abortus 2308] gi|148559551|ref|YP_001259957.1| transcription elongation factor NusA [Brucella ovis ATCC 25840] gi|161620071|ref|YP_001593958.1| transcription elongation factor NusA [Brucella canis ATCC 23365] gi|189025212|ref|YP_001935980.1| transcription elongation factor NusA [Brucella abortus S19] gi|254690294|ref|ZP_05153548.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|254694782|ref|ZP_05156610.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|254696410|ref|ZP_05158238.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|254705161|ref|ZP_05166989.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|254707321|ref|ZP_05169149.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|254709137|ref|ZP_05170948.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|254731323|ref|ZP_05189901.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|256030662|ref|ZP_05444276.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|256045766|ref|ZP_05448644.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|256060123|ref|ZP_05450305.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|256112485|ref|ZP_05453406.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|256158664|ref|ZP_05456547.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|256254068|ref|ZP_05459604.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|256258547|ref|ZP_05464083.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|256370558|ref|YP_003108069.1| transcription elongation factor NusA [Brucella microti CCM 4915] gi|260169566|ref|ZP_05756377.1| transcription elongation factor NusA [Brucella sp. F5/99] gi|260546263|ref|ZP_05822003.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260563062|ref|ZP_05833548.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260755834|ref|ZP_05868182.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|260759057|ref|ZP_05871405.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|260760782|ref|ZP_05873125.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|260884859|ref|ZP_05896473.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|261215109|ref|ZP_05929390.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|261221209|ref|ZP_05935490.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|261314803|ref|ZP_05954000.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|261316637|ref|ZP_05955834.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|261324100|ref|ZP_05963297.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|261755866|ref|ZP_05999575.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|261759094|ref|ZP_06002803.1| ribosomal protein S1 [Brucella sp. F5/99] gi|265987709|ref|ZP_06100266.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|265992183|ref|ZP_06104740.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|265993921|ref|ZP_06106478.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|265997170|ref|ZP_06109727.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|297247386|ref|ZP_06931104.1| transcription termination protein NusA [Brucella abortus bv. 5 str. B3196] gi|17984018|gb|AAL53148.1| n utilization substance protein a [Brucella melitensis bv. 1 str. 16M] gi|23349051|gb|AAN31053.1| N utilization substance protein A [Brucella suis 1330] gi|62197132|gb|AAX75432.1| MusA, N utilization substance protein A [Brucella abortus bv. 1 str. 9-941] gi|82617010|emb|CAJ12119.1| Ribosomal protein S1:RNA binding S1:KH domain:KH domain, type 1 [Brucella melitensis biovar Abortus 2308] gi|148370808|gb|ABQ60787.1| N utilization substance protein A [Brucella ovis ATCC 25840] gi|161336882|gb|ABX63187.1| transcription termination factor NusA [Brucella canis ATCC 23365] gi|189020784|gb|ACD73506.1| Ribosomal protein S1 [Brucella abortus S19] gi|256000721|gb|ACU49120.1| transcription elongation factor NusA [Brucella microti CCM 4915] gi|260096370|gb|EEW80246.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260153078|gb|EEW88170.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260669375|gb|EEX56315.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|260671214|gb|EEX58035.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|260675942|gb|EEX62763.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|260874387|gb|EEX81456.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|260916716|gb|EEX83577.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|260919793|gb|EEX86446.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|261295860|gb|EEX99356.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|261300080|gb|EEY03577.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|261303829|gb|EEY07326.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|261739078|gb|EEY27074.1| ribosomal protein S1 [Brucella sp. F5/99] gi|261745619|gb|EEY33545.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|262551638|gb|EEZ07628.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|262764902|gb|EEZ10823.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|263003249|gb|EEZ15542.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|264659906|gb|EEZ30167.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|297174555|gb|EFH33902.1| transcription termination protein NusA [Brucella abortus bv. 5 str. B3196] Length = 537 Score = 708 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|241207071|ref|YP_002978167.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860961|gb|ACS58628.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 533 Score = 708 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 353/516 (68%), Positives = 430/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 +KF+G S + + E MI+ AR GWI +E + Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDL 518 >gi|260567370|ref|ZP_05837840.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260156888|gb|EEW91968.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] Length = 537 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 340/522 (65%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRG RVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGFRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|254713438|ref|ZP_05175249.1| transcription elongation factor NusA [Brucella ceti M644/93/1] gi|254716206|ref|ZP_05178017.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261217980|ref|ZP_05932261.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261321170|ref|ZP_05960367.1| transcription elongation factor NusA [Brucella ceti M644/93/1] gi|260923069|gb|EEX89637.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261293860|gb|EEX97356.1| transcription elongation factor NusA [Brucella ceti M644/93/1] Length = 537 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 340/522 (65%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KT ED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTKEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|163844176|ref|YP_001628581.1| transcription elongation factor NusA [Brucella suis ATCC 23445] gi|163674899|gb|ABY39010.1| transcription termination factor NusA [Brucella suis ATCC 23445] Length = 537 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA VTKVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPVAASFIVNALQPAEVTKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|227824069|ref|YP_002828042.1| transcription elongation factor NusA [Sinorhizobium fredii NGR234] gi|227343071|gb|ACP27289.1| transcription termination factor, NusA [Sinorhizobium fredii NGR234] Length = 536 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 355/522 (68%), Positives = 440/522 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ ++Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKADDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYEEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA VTKVVL Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVTKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RAREYL+ ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLDEISSIDGFDEETATEIQTRAREYLDKVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGVS+EL I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDAKRKELGVSDELRQIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 ++F+G S L +++ E+MI+ AR GWI +E +A ++ + Sbjct: 483 KRFEGTFSKLEVSREEAEAMIVQARLAAGWITEEDLAADQDE 524 >gi|182678035|ref|YP_001832181.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633918|gb|ACB94692.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 538 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 334/523 (63%), Positives = 412/523 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +VL+ M D+IQKAARS YG +++R EINP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLASMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+E++N QI+L AR ++P+ ++G +++ LPP DFGR+A QSAKQVI+QK Sbjct: 63 FSRLLHVVDEIDNDAVQITLAEARKKNPAAELGDWIAETLPPFDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREVFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VKAV+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDGVIEVKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL Sbjct: 243 ISRDTSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESARRQKEFTERTAM 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ LL +EGF VEELA V+ SE+A IEGFDEETA EIQ RA YL I+ Sbjct: 363 FMGALDVDEVVGQLLASEGFRSVEELAFVEPSELAVIEGFDEETAAEIQARANAYLARIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + RELGVS++L I G+ + + V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 423 AEHETRRRELGVSDDLLEIDGLTNAMLVKFGENDIKTVEDLAGCATDDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + G L +++ E +I+ AR K GWI+ A E Q+ Sbjct: 483 TRHPGILDGFEVSREEAEGLIMKARVKAGWIDALPEASEPEQE 525 >gi|225853588|ref|YP_002733821.1| transcription elongation factor NusA [Brucella melitensis ATCC 23457] gi|256262928|ref|ZP_05465460.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|225641953|gb|ACO01867.1| transcription termination factor NusA [Brucella melitensis ATCC 23457] gi|263092802|gb|EEZ16977.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|326410161|gb|ADZ67226.1| transcription elongation factor NusA [Brucella melitensis M28] gi|326539879|gb|ADZ88094.1| transcription termination factor NusA [Brucella melitensis M5-90] Length = 537 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 339/522 (64%), Positives = 421/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLA QLTGW IDI+TE+E+S R K+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLALQLTGWDIDILTEDEESERRHKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|15963990|ref|NP_384343.1| transcription elongation factor NusA [Sinorhizobium meliloti 1021] gi|307306402|ref|ZP_07586146.1| NusA antitermination factor [Sinorhizobium meliloti BL225C] gi|307319289|ref|ZP_07598718.1| NusA antitermination factor [Sinorhizobium meliloti AK83] gi|15073166|emb|CAC41674.1| Probable N utilization substance protein A [Sinorhizobium meliloti 1021] gi|306895125|gb|EFN25882.1| NusA antitermination factor [Sinorhizobium meliloti AK83] gi|306902244|gb|EFN32841.1| NusA antitermination factor [Sinorhizobium meliloti BL225C] Length = 542 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 354/516 (68%), Positives = 437/516 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V++ EI+SIEGFDE+TA E+Q RAREYLE I+ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTRAREYLEKIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGVS+EL +I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDAKRKELGVSDELRTIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++F+G S +++ E+MI+ AR GWI +E + Sbjct: 483 KRFEGIFSKFEVTREEAETMIVQARLAAGWITEEDL 518 >gi|163757748|ref|ZP_02164837.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43] gi|162285250|gb|EDQ35532.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43] Length = 550 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 344/516 (66%), Positives = 431/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++V++ MAD+IQKAARS YG+ S+IR +IN +TG+I Sbjct: 7 VSANRLELLQIADAVAREKSIDREIVIAAMADAIQKAARSRYGSESNIRADINAKTGEIK 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L +ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 67 LQRLLEVVEHAEDYSTQIPLMLARDRNPDAQLGDFIADPLPPMDFGRIAAQSAKQVIVQK 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD++GE+++GTVKRVEYGNVIVDLG +G++RRDETI RE R GDR Sbjct: 127 VREAERDRQFDEFKDRIGEVVNGTVKRVEYGNVIVDLGRGEGIVRRDETIPREAFRYGDR 186 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++++V+RDPGSRAK+AV Sbjct: 187 IRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIRSVARDPGSRAKIAV 246 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP ATF++NAL+PA V KVVL Sbjct: 247 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSPATFIVNALQPAEVAKVVL 306 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNERTQ Sbjct: 307 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFNERTQL 366 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGF+ VEE+A V + EI +IEGFD+ETA E+Q RAREYL+ ++ Sbjct: 367 FMEALDVDEMVGQVLASEGFSQVEEVAYVDLGEITAIEGFDDETAEELQTRAREYLDKVE 426 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K +ELGV +EL SI G+ + + VALG + IKT+ED AGC+VDDL GWSE K G Sbjct: 427 AELDAKRKELGVEDELRSIAGMTTAMMVALGGDEIKTVEDFAGCAVDDLTGWSERKDGET 486 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++FDG + + + + ESMI+ AR +GWI ++++ Sbjct: 487 KRFDGLFTGMDITRAEAESMILSARLAVGWITEDEL 522 >gi|153008085|ref|YP_001369300.1| transcription elongation factor NusA [Ochrobactrum anthropi ATCC 49188] gi|151559973|gb|ABS13471.1| NusA antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 535 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 342/517 (66%), Positives = 419/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFTERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGFA VEELA V+ EIASI+GFDE+TA EIQ RAREYL+ I+ Sbjct: 363 FMDALNVDEMVGQVLASEGFASVEELAYVEPGEIASIDGFDEDTAGEIQERAREYLDRIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV +EL +PGI + + VA+GE+G+KTMED AG +VDDL+GW E K G Sbjct: 423 SEQDDRRKELGVEDELRELPGITTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G SS + E M++ AR K GWI +E++A Sbjct: 483 VAHSGIFSSFDVSRVDAEQMVLTARLKAGWITEEELA 519 >gi|222084328|ref|YP_002542857.1| N-utilization substance protein A [Agrobacterium radiobacter K84] gi|221721776|gb|ACM24932.1| N-utilization substance protein A [Agrobacterium radiobacter K84] Length = 534 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 358/524 (68%), Positives = 436/524 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A FV+NAL+PA V+KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSNEPANFVVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V++ EIASI+GFDEETA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAAVEELAYVELDEIASIDGFDEETAQEIQQRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV++EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVADELRQINGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +KF+G S L + + E MI+ AR GWI + +A+E + A Sbjct: 483 KKFEGLFSKLEISRVEAEQMIVQARLSAGWITEADLANETEEVA 526 >gi|315122010|ref|YP_004062499.1| transcription elongation factor NusA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495412|gb|ADR52011.1| transcription elongation factor NusA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 536 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 449/525 (85%), Positives = 490/525 (93%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSIDRDVVLSVMA+SIQKAARSLYGT+SDIRVEIN ETG+I Sbjct: 2 VVSANRLELLQIADAVACEKSIDRDVVLSVMAESIQKAARSLYGTLSDIRVEINRETGNI 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ R LEVVEEVENY CQISL++ARDRDP+I+IG V+ DPLPP+DFGRVAVQSAKQVIIQ Sbjct: 62 SICRSLEVVEEVENYACQISLQLARDRDPNINIGDVLFDPLPPIDFGRVAVQSAKQVIIQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG+SDGVIRRDETISRENLR GD Sbjct: 122 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGHSDGVIRRDETISRENLRLGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+SYIYDVRREQRGPQVLLSRTHPQFMVKLF++EVPEIYNGIVQ+KAVSRDPGSRAKLA Sbjct: 182 RVRSYIYDVRREQRGPQVLLSRTHPQFMVKLFYLEVPEIYNGIVQIKAVSRDPGSRAKLA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVV ELRDEKIDIVVWSPD ATFVIN+LRPAIVTKVV Sbjct: 242 VFSSDSSIDPVGACVGMRGSRVQAVVGELRDEKIDIVVWSPDPATFVINSLRPAIVTKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEV+VPK+QLSLAIGRRGQNVRLASQLTGW IDI+TEEEDS+NRQK FNERTQ Sbjct: 302 LDEDVGRIEVVVPKDQLSLAIGRRGQNVRLASQLTGWAIDIVTEEEDSVNRQKHFNERTQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEII HLL AEGF+D+EELACVK+SEIASIEGFDEETA EIQGRAREY+EG+ Sbjct: 362 FFMQAINVDEIIGHLLAAEGFSDIEELACVKLSEIASIEGFDEETASEIQGRAREYMEGL 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++KI+ LGVSEEL SIPG++++I VALGENGIKTMEDLAGCSVDDLLGW E K G Sbjct: 422 EVARREKIKGLGVSEELFSIPGMNTEIGVALGENGIKTMEDLAGCSVDDLLGWGEVKNGK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +E F+GFLS LG K+Q ESMIIHARY +GWI +E +ADE V A Sbjct: 482 VENFEGFLSQLGVLKEQAESMIIHARYHLGWIVREDIADESVDCA 526 >gi|110636252|ref|YP_676460.1| transcription elongation factor NusA [Mesorhizobium sp. BNC1] gi|110287236|gb|ABG65295.1| NusA antitermination factor [Chelativorans sp. BNC1] Length = 534 Score = 703 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 335/516 (64%), Positives = 416/516 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSID+ +V+ MAD+IQKAARS YG ++IR +IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKSIDKTIVIQAMADAIQKAARSRYGQETNIRADINAQTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RL+EVVE VE QIS+ AR R+P G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLMEVVENVEEPARQISIVDARTRNPDAQAGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE+ + GDR Sbjct: 123 VREAERDRQYEEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDELIPRESFKYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++A+F++NAL+PA V+KVVL Sbjct: 243 ISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWNENAASFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFTERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGF VEE+A V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMDALNVDEMVGQVLASEGFTSVEEIAYVDADEISSIDGFDEDTAEEIQARAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGVS++L IPG+ + + V LGE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 AERDAKRRELGVSDDLREIPGMTTAMMVKLGEDGVKTIEDFAGYAVDDLVGWRERKDGEN 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + F G S L + + E M++ AR KMGWI ++ + Sbjct: 483 KFFPGVFSDLDLSRAEAEQMVVAARLKMGWISEDDL 518 >gi|319779771|ref|YP_004139247.1| transcription termination factor NusA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165659|gb|ADV09197.1| transcription termination factor NusA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 531 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 335/522 (64%), Positives = 423/522 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDSGEIASIDGFDEDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K + LGVS+EL IPG+ + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDDKRKALGVSDELREIPGVTTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 + + G L++ G + E M++ AR K GWI ++++A EEV Sbjct: 482 TKVYPGVLANHGVTRADAEQMVLAARLKAGWITEDELAAEEV 523 >gi|222147147|ref|YP_002548104.1| transcription elongation factor NusA [Agrobacterium vitis S4] gi|221734137|gb|ACM35100.1| N-utilization substance protein A [Agrobacterium vitis S4] Length = 538 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 349/512 (68%), Positives = 424/512 (82%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QI+L++ARDR+ +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVETVEDYGTQIALELARDRNVDAKLGDYIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEII+GTVKRVEYGNVIVDLG +G+IRRDE I RE +R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIINGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRETMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSADPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EIASI+GFD +TA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLEEIASIDGFDGDTAEEIQTRAREYLEKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K + LGVS+EL SI G+ +++ VALG +GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AELDAKRKALGVSDELRSIDGMTTQMLVALGGDGIKTVEDFAGCAADDLIGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +KF+G S + + + E MI+ AR GWI Sbjct: 483 KKFEGLFSKIDISRTEAEQMIVQARLAAGWIT 514 >gi|150398625|ref|YP_001329092.1| transcription elongation factor NusA [Sinorhizobium medicae WSM419] gi|150030140|gb|ABR62257.1| NusA antitermination factor [Sinorhizobium medicae WSM419] Length = 552 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 356/518 (68%), Positives = 439/518 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I Sbjct: 13 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 72 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 73 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 132 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 133 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 192 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV Sbjct: 193 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 252 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL Sbjct: 253 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 312 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 313 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 372 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA VEELA V + EIASIEGFDEET+ EIQ RAREYLE I+ Sbjct: 373 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEIASIEGFDEETSNEIQTRAREYLEKIE 432 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL +I G++S++ VALGE GIKT+ED AGC+ DDL+GW E K G Sbjct: 433 AEMDAKRKELGVADELRTINGLNSQMLVALGEEGIKTIEDFAGCAADDLVGWVERKDGET 492 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 ++F+G S L +++ E+MI+ AR GWI +E +A Sbjct: 493 KRFEGTFSKLEVTREEAEAMIVQARLAAGWITEEDLAK 530 >gi|254718200|ref|ZP_05180011.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|265983158|ref|ZP_06095893.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|306837714|ref|ZP_07470583.1| transcription termination factor NusA [Brucella sp. NF 2653] gi|306842729|ref|ZP_07475371.1| transcription termination factor NusA [Brucella sp. BO2] gi|306843580|ref|ZP_07476181.1| transcription termination factor NusA [Brucella sp. BO1] gi|264661750|gb|EEZ32011.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|306276271|gb|EFM57971.1| transcription termination factor NusA [Brucella sp. BO1] gi|306287073|gb|EFM58578.1| transcription termination factor NusA [Brucella sp. BO2] gi|306407272|gb|EFM63482.1| transcription termination factor NusA [Brucella sp. NF 2653] Length = 537 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|325291533|ref|YP_004277397.1| transcription elongation factor NusA [Agrobacterium sp. H13-3] gi|325059386|gb|ADY63077.1| transcription elongation factor NusA [Agrobacterium sp. H13-3] Length = 538 Score = 701 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 353/524 (67%), Positives = 436/524 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVETAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFD++TA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLGEISSIDGFDDDTADEIQTRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDAKRKELGVADELRQIEGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +KF+G S L + + E+M++ AR GWI E +A EE DA Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEDLASEEEVDA 526 >gi|15887443|ref|NP_353124.1| transcription elongation factor NusA [Agrobacterium tumefaciens str. C58] gi|15154956|gb|AAK85909.1| N-utilization substance protein A [Agrobacterium tumefaciens str. C58] Length = 538 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 349/516 (67%), Positives = 432/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA VEELA V + EI SI+GFDE+TA EIQ RAREYLE ++ Sbjct: 363 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDAKRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 +KF+G S L + + E+M++ AR GWI E++ Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEEL 518 >gi|328545919|ref|YP_004306028.1| transcription elongation protein (N utilization substance protein A) (L factor) [polymorphum gilvum SL003B-26A1] gi|326415659|gb|ADZ72722.1| Putative transcription elongation protein (N utilization substance protein A) (L factor) [Polymorphum gilvum SL003B-26A1] Length = 544 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 337/522 (64%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRGIVIAAMEDAIQKAARSRYGTETEVRAEINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +ISL A+ R+P +G +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVETVENVSTEISLADAKARNPEATLGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YIYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV Sbjct: 183 IRAYIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD+ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNPDAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRQKEFQERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL EGF VEE+A V + EIA IEGFDE+TA EIQ RAR+YL ++ Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVDLEEIAMIEGFDEDTAEEIQARARDYLAELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV +EL SI G+ + + VALG++G+KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDDERRELGVQDELRSIDGLTTAMLVALGKDGVKTIEDLAGCATDDLVGWTERKEGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 + DG LS + E+MI+ AR GWI +E++A++ + Sbjct: 483 IRHDGALSGFDVSRADAEAMILAARLAAGWITEEELANQNDE 524 >gi|239833211|ref|ZP_04681540.1| transcription termination factor NusA [Ochrobactrum intermedium LMG 3301] gi|239825478|gb|EEQ97046.1| transcription termination factor NusA [Ochrobactrum intermedium LMG 3301] Length = 535 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 336/512 (65%), Positives = 415/512 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL ARDR+P IG ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQIGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA +EELA V+ EIASI+GFD++TA EIQ RAREYL+ I+ Sbjct: 363 FMEALDVDEMVGQVLASEGFASIEELAYVEPGEIASIDGFDDDTAGEIQERAREYLDRIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PGI + + VA+GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 SEQDNRRKELGVADELRELPGITTAMLVAVGEDGVKTIEDFAGYAVDDLVGWRERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G S + E M++ AR K GWI Sbjct: 483 VAHSGIFSPFDVSRVDAEQMVLTARLKAGWIT 514 >gi|260461982|ref|ZP_05810227.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259032229|gb|EEW33495.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 531 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 332/513 (64%), Positives = 416/513 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDEDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K + LGVS+EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDDKRKALGVSDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + + G L++ G + E M+++AR K GWI Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWIT 514 >gi|319408013|emb|CBI81667.1| transcription elongation protein [Bartonella schoenbuchensis R1] Length = 537 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 333/515 (64%), Positives = 422/515 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A I IG DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVDIVEDYTNEIALSDALKHQVDIKIGDFFCDPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD+Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + +IRRDE I RE+ GDR Sbjct: 123 VRDAERDQQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIIRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV REQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE+E+S NRQK+FNER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDILTEQEESENRQKEFNERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE++ ++ +EGFA +EE+A V + EIASI+GFD ETA EIQ RAREYLE + Sbjct: 363 FMESLDVDEMVGQVMASEGFASIEEIAYVDLEEIASIDGFDNETASEIQSRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGV++EL S+PG+ + + VA+GE+GIKT++D AG +VDDL+GW E KGG + Sbjct: 423 KELDEKRKKLGVADELRSLPGMTNAMLVAIGEDGIKTIDDFAGYAVDDLIGWRERKGGQV 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + F G L+ + E+MI+ AR + GWI + Sbjct: 483 QNFSGILTPFDITRTDAEAMILAARVQAGWICQTD 517 >gi|319403631|emb|CBI77216.1| transcription elongation protein [Bartonella rochalimae ATCC BAA-1498] Length = 537 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 324/526 (61%), Positives = 418/526 (79%), Gaps = 1/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++ Sbjct: 303 DEDAERIEVVVPGDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K +ELGVS+EL ++PGI + + V +GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKELGVSDELQTLPGITNAMLVVIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV-ADEEVQDAS 526 + F G L+ + E+M++ AR + GWI + + V+D + Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQADLIKQHPVEDEA 528 >gi|13474627|ref|NP_106196.1| transcription elongation factor NusA [Mesorhizobium loti MAFF303099] gi|14025381|dbj|BAB51982.1| N utilization substance protein A [Mesorhizobium loti MAFF303099] Length = 531 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 330/512 (64%), Positives = 416/512 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFD++TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDDDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +K + LGV +EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDEKRKALGVKDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + + G L++ G + E M+++AR K GWI Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWI 513 >gi|121602814|ref|YP_989501.1| transcription elongation factor NusA [Bartonella bacilliformis KC583] gi|120614991|gb|ABM45592.1| transcription elongation protein nusA [Bartonella bacilliformis KC583] Length = 537 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 321/523 (61%), Positives = 416/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +ISL A IG + D LP MDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQIVDIVEDYTTEISLSDALKHQADAKIGDFIFDLLPSMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + V+RRDE I E+ GDR Sbjct: 123 VRDAERNHQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAVVRRDELIPCESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KV+L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VD+I+ ++ +EGF+ +EE+A V + EIASI+GFD E A EIQ RAREYLE + Sbjct: 363 FMESLDVDKIVGQVMASEGFSSIEEIAYVGLDEIASIDGFDSEIATEIQKRAREYLENKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K + L V++EL ++PGI + + +A+GE+G+KTM+D AG +VDDL+GW E K G Sbjct: 423 KELDEKRKSLCVADELQTLPGITNAMLIAIGEDGVKTMDDFAGYAVDDLVGWRERKKGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+MI++AR + GWI + + E+ ++ Sbjct: 483 QNFPGILTPFDITRADAEAMILYARVQAGWITQTDLTTEDPEE 525 >gi|319405101|emb|CBI78705.1| transcription elongation protein [Bartonella sp. AR 15-3] Length = 537 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 324/516 (62%), Positives = 416/516 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F+ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFSERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAR+YLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFISIEEIAYVDLEEIKSIDGFDHDTASEIQNRARKYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL +PGI + + VA+GE+GIKTMED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKKLGVSDELQLLPGITNAMLVAIGEDGIKTMEDFAGYAVDDLVGWREFKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + F G L+ + E+M++ AR + GWI + + Sbjct: 483 QNFPGILTPFDVTRADAEAMVLAARVQAGWINQTDL 518 >gi|49475029|ref|YP_033070.1| transcription elongation factor NusA [Bartonella henselae str. Houston-1] gi|49237834|emb|CAF27029.1| N utilization substance protein A [Bartonella henselae str. Houston-1] Length = 528 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 325/523 (62%), Positives = 419/523 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ +E+YT +I+L A R +G +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDIIEDYTSEITLSDALKRQADAKVGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAEREQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RA+EYLE + Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQNRAQEYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGV +EL +PG+ S + VA+GE+G+KTMED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVCDELRMLPGMTSAMLVAIGEDGVKTMEDFAGYAVDDLAGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI + + E + Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWINQADLVTENSAE 525 >gi|146337225|ref|YP_001202273.1| transcription elongation factor NusA [Bradyrhizobium sp. ORS278] gi|146190031|emb|CAL74023.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Bradyrhizobium sp. ORS278] Length = 535 Score = 694 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 328/528 (62%), Positives = 410/528 (77%), Gaps = 3/528 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + ++ASIEGFDEETA E+Q RARE+LE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLASIEGFDEETATELQTRAREFLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + L+ K +ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW E K G Sbjct: 423 QEAELEAKRKELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWVERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 G KF G L L +D E+M++ AR K GWI + +A E +D + Sbjct: 483 GEQTKFAGILDGLDVSRDDAEAMVMQARVKAGWITEADLAKGEAEDEA 530 >gi|319406547|emb|CBI80189.1| transcription elongation protein [Bartonella sp. 1-1C] Length = 537 Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 323/516 (62%), Positives = 414/516 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++ Sbjct: 303 DEDAERIEVVVPSDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLEHKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K +ELGVS+EL ++P I + + VA+GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKELGVSDELQTLPSITNAMLVAIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + F G L+ + E+M++ AR + GWI + + Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQADL 518 >gi|298293854|ref|YP_003695793.1| transcription termination factor NusA [Starkeya novella DSM 506] gi|296930365|gb|ADH91174.1| transcription termination factor NusA [Starkeya novella DSM 506] Length = 536 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 319/512 (62%), Positives = 399/512 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI EI+P TG++ Sbjct: 3 VVSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGAETDIHAEISPRTGEL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++V+N +I L AR +P+ +G ++D LPP DFGR+A QSAKQVI+Q Sbjct: 63 RLARHLLVVDQVDNPAVEIDLDGARRLNPAAQVGDSIADTLPPFDFGRIAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI +G VKRVEYGNV+VDLG + +RRDE + RE + GD Sbjct: 123 KVREAERDRQYEEYKDRIGEITNGAVKRVEYGNVVVDLGRGEASLRRDELLPREVFKTGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+A Sbjct: 183 RIRAYVYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V KVV Sbjct: 243 VTSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDVATFIVNALAPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT+ Sbjct: 303 LDEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFAERTK 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+++DE++ LL +EGFA VEE+A V ++E+ASIEGFDE+TA E+Q RA +L I Sbjct: 363 MFAEALDLDEMMGQLLASEGFASVEEIAYVPVNELASIEGFDEDTAQELQNRALNHLAQI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + L + +ELGV + L +PG+ S + VA GEN IKT+EDLAGC+ DDL GW+E K G Sbjct: 423 EADLDARRKELGVEDALREVPGVTSAMLVAFGENDIKTVEDLAGCATDDLTGWTERKDGE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L ++ E++I+ AR + GWI Sbjct: 483 TVRIAGALDGFDLSREDAEALIMQARVRAGWI 514 >gi|158421642|ref|YP_001522934.1| transcription elongation factor NusA [Azorhizobium caulinodans ORS 571] gi|158328531|dbj|BAF86016.1| transcription termination factor [Azorhizobium caulinodans ORS 571] Length = 532 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 320/512 (62%), Positives = 404/512 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAARS YG +DI EINP TG++ Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARSRYGQETDIHAEINPRTGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK Sbjct: 64 LARHLLVVDEVENSATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++ E+++G VKRVEYGNV+VDLG + ++RRDE + RE ++ GDR Sbjct: 124 VREAERDRQYDEFKDRISEVVNGLVKRVEYGNVVVDLGRGEAILRRDELLPREVVKTGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YIYDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV Sbjct: 184 IRAYIYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERT+ Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTKM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+++DE++ LL +EGF VEE+A V +SE+ASIEGFDEETA E+Q RA ++L ++ Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVPVSELASIEGFDEETAAELQARALKHLSDVE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV ++L ++PG+ SK+ VA G+N IK++EDLAGC+ DDL+GW+E K G Sbjct: 424 EALDNERRELGVEDDLKTVPGVTSKMLVAFGKNDIKSVEDLAGCATDDLVGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +F G L ++ ES+I+ AR GWI Sbjct: 484 VRFPGALDGFELSREDAESLIMQARIAAGWIS 515 >gi|163867513|ref|YP_001608712.1| transcription elongation factor NusA [Bartonella tribocorum CIP 105476] gi|161017159|emb|CAK00717.1| transcription elongation protein [Bartonella tribocorum CIP 105476] Length = 543 Score = 692 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 330/526 (62%), Positives = 422/526 (80%), Gaps = 1/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDVVEDYTTEIALSDALKCQEEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD+QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERDQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTASEIQSRAREYLEHQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDDKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLTGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV-ADEEVQDAS 526 + F G L+ + E+M++ AR + GWI++ + A+ V+D + Sbjct: 483 KSFSGVLTPFDITRADAEAMVLAARVQAGWIDQADLVAENPVEDEN 528 >gi|316931577|ref|YP_004106559.1| transcription termination factor NusA [Rhodopseudomonas palustris DX-1] gi|315599291|gb|ADU41826.1| transcription termination factor NusA [Rhodopseudomonas palustris DX-1] Length = 537 Score = 692 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 330/527 (62%), Positives = 414/527 (78%), Gaps = 4/527 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDEI+ LL +EGF VEELA V E+ASIEGFDEETA E+Q RAREYL+ Sbjct: 363 RAFMDALNVDEIVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRAREYLDQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRTELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA-DEEVQD 524 G K+ G L + ++ E +I+ AR K GWI++ ++A DEE D Sbjct: 483 GEPVKYPGILDGMELSREDAEHLIMQARVKAGWIDESELASDEEPAD 529 >gi|240849883|ref|YP_002971271.1| transcription elongation factor NusA [Bartonella grahamii as4aup] gi|240267006|gb|ACS50594.1| transcription elongation factor NusA [Bartonella grahamii as4aup] Length = 543 Score = 692 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 328/526 (62%), Positives = 422/526 (80%), Gaps = 1/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDVVEDYTTEITLSDALKHQAEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAEREQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYL+ + Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTAAEIQSRAREYLDHQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLAGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE-EVQDAS 526 + F G L+ + E+M++ AR + GWI++ + E V+D + Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWIDQVDLVTENPVEDEN 528 >gi|217978443|ref|YP_002362590.1| NusA antitermination factor [Methylocella silvestris BL2] gi|217503819|gb|ACK51228.1| NusA antitermination factor [Methylocella silvestris BL2] Length = 532 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 331/530 (62%), Positives = 416/530 (78%), Gaps = 7/530 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +VLS M D+IQKAARS YG +++R EINP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLSSMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+++EN I+L+ AR ++P+ +G +++ LPP DFGR+A QSAKQVI+QK Sbjct: 63 FSRLLLVVDQIENDAIHITLEDARKKNPAAQVGDWIAETLPPFDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREMFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ I+QVKAV+RDPGSRAK+AV Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFQQEVPEIYDNIIQVKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNA 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ LL +EGF VEELA V+ +E+A+IEGFDE+TAVEIQ RA++YL I+ Sbjct: 363 FMNALDVDEVVGQLLASEGFRSVEELAFVEPAELAAIEGFDEDTAVEIQARAQDYLARIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++ ELGV++EL + G+ + + V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 AEQDQRRIELGVADELREVAGVTTAMLVKFGENDVKTVEDLAGCATDDLIGWTERKEGES 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE-------KEKVADEEVQD 524 K G+L +++ E+MI+ AR GWI+ +E + EV+D Sbjct: 483 VKHAGYLDGFELTREEAETMIMTARVHAGWIDAIPQPAVEEPQLEGEVRD 532 >gi|209883664|ref|YP_002287521.1| transcription elongation factor NusA [Oligotropha carboxidovorans OM5] gi|209871860|gb|ACI91656.1| transcription elongation factor NusA [Oligotropha carboxidovorans OM5] Length = 541 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 326/518 (62%), Positives = 409/518 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDSKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISL+ A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVETVENPANQISLEDAKRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+ Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGF+ VEEL V + E+A IEGFDEETA E+Q RAREYLE ++ Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELVLVDVRELAGIEGFDEETANELQSRAREYLEHLE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L+ K +ELGV + + +PGI KI V LGEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 424 AELEAKRKELGVEDAMKDVPGITGKILVKLGENDVKTVEDLAGCATDDLVGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 K DGFL + T +D+ E++I+ AR GWI + +A Sbjct: 484 VKHDGFLDASETSRDEAEALIMQARLAAGWITEADLAK 521 >gi|39933515|ref|NP_945791.1| transcription elongation factor NusA [Rhodopseudomonas palustris CGA009] gi|39647361|emb|CAE25882.1| putative NusA protein, transcriptional termination factor [Rhodopseudomonas palustris CGA009] Length = 537 Score = 691 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 325/524 (62%), Positives = 410/524 (78%), Gaps = 3/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 K+ G L + ++ E +I+ AR K GWI++ ++A EE Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEED 526 >gi|254502609|ref|ZP_05114760.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11] gi|222438680|gb|EEE45359.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11] Length = 550 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 333/519 (64%), Positives = 421/519 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TGDI Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +ISL A R+P +G +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVETVENVSTEISLDDAAARNPEAGVGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGE+I+G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEFKDRVGEVINGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMSKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDEAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S R K+F ER+Q Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRSKEFQERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ LL EGF VEE+A V+I EI+ IEGFD++TAVEIQ RAR++L ++ Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVEIEEISMIEGFDDDTAVEIQARARDFLNELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ ELGV +EL SI G+ S + VALG++ +KTMEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDEERIELGVLDELRSIDGLTSAMLVALGKDDVKTMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +++DG LS+ + E+M++ AR GWI +E++A + Sbjct: 483 KRYDGALSAYDVSRADAENMVMAARLAAGWITEEELAAQ 521 >gi|27375896|ref|NP_767425.1| transcription elongation factor NusA [Bradyrhizobium japonicum USDA 110] gi|27349034|dbj|BAC46050.1| N-utilization substance protein A [Bradyrhizobium japonicum USDA 110] Length = 536 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 330/529 (62%), Positives = 412/529 (77%), Gaps = 4/529 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN++ QISL A+ +P +G ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENHSNQISLVDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V I E+A IEGFDEETA E+Q RAREYLE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDIKELAGIEGFDEETAQELQNRAREYLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + L+ K ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K G Sbjct: 423 QEAELEAKRVELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA-DEEVQDAS 526 G K+ G L + +D E+MI+ AR K GWI + +A E +AS Sbjct: 483 GETTKYPGALDGIEISRDDAEAMIMQARVKAGWITEADLAKPAEEAEAS 531 >gi|192288873|ref|YP_001989478.1| transcription elongation factor NusA [Rhodopseudomonas palustris TIE-1] gi|192282622|gb|ACE99002.1| NusA antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 537 Score = 690 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 325/524 (62%), Positives = 410/524 (78%), Gaps = 3/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 K+ G L + ++ E +I+ AR K GWI++ ++A EE Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEEE 526 >gi|49473872|ref|YP_031914.1| transcription elongation factor NusA [Bartonella quintana str. Toulouse] gi|49239375|emb|CAF25708.1| N utilization substance protein A [Bartonella quintana str. Toulouse] Length = 543 Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 328/522 (62%), Positives = 417/522 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++I EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIHAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A R IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDIVEDYTTEITLSDALKRQADAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 V +AERD+QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ GDR Sbjct: 123 VHDAERDQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVSDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DEDV RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDVERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RAREYLE + Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQSRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL +PGI + + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVSDELRMLPGITNAMLVAIGEDGVKTIEDFAGYAVDDLAGWKERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 + F G L+ + E+M++ AR + GWI+K + E Sbjct: 483 QNFSGILTPFDITRFDAEAMVLAARVQAGWIDKADLITENPA 524 >gi|118590498|ref|ZP_01547900.1| transcription elongation factor NusA [Stappia aggregata IAM 12614] gi|118436961|gb|EAV43600.1| transcription elongation factor NusA [Stappia aggregata IAM 12614] Length = 551 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 328/512 (64%), Positives = 419/512 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VEN + ISL+ A+ R+P IG +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVDSVENVSTDISLEDAQARNPEASIGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGE+++G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYEEFKDRVGEVVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEEAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFLERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD++TAVEIQ RAR+YL ++ Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDDTAVEIQARARDYLAELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ LGV+++L SI G+ + + VALG++GIKTMEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDEERVSLGVADDLRSIDGLTTAMLVALGKDGIKTMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++F+G LS + + E++++ AR GWI Sbjct: 483 KRFEGALSEFDMSRAEAENVVMAARLAAGWIT 514 >gi|323136838|ref|ZP_08071919.1| NusA antitermination factor [Methylocystis sp. ATCC 49242] gi|322398155|gb|EFY00676.1| NusA antitermination factor [Methylocystis sp. ATCC 49242] Length = 532 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 336/525 (64%), Positives = 419/525 (79%), Gaps = 2/525 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP TG++ Sbjct: 3 VSANRLEILQIADAVAREKSIDRSIVIASMEDALQKAARSRYGQETEVRAEINPRTGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLLEVV++VEN QI+++ AR R+P+ G +S+ LPP DFGR+A QSAKQ+I+QK Sbjct: 63 FSRLLEVVDKVENDATQIAIEDARKRNPAAQAGDWISETLPPFDFGRIAAQSAKQIIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG +GVIRRDE I RE RPGDR Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEGVIRRDEMIPREMFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VK+V+RDPGSRAK+AV Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFKQEVPEIYDGVIEVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL Sbjct: 243 VSRDSSIDPVGACVGMRGSRVQAVVQELQGERIDIIPWSVDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSSRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNT 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM AI+VDE++ LL +EGF VE+LA V++SE+ASIEGFDE+TA EIQ RAR YL+ ++ Sbjct: 363 FMTAIDVDEVVGRLLASEGFRSVEDLAYVELSELASIEGFDEDTATEIQNRARAYLDKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + ELGVS+EL I G+ + + V LGEN +KTMED AGC DDL+GWSE K G Sbjct: 423 AENEARRVELGVSDELREIDGMTTAMMVRLGENDVKTMEDFAGCVPDDLVGWSEKKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 K +GF + +++ E+MI+ AR ++GWI EK A E +A+ Sbjct: 483 TKHEGFFEGIELSREEAEAMIMAARVRVGWI--EKPAPEAETEAA 525 >gi|148251679|ref|YP_001236264.1| transcription elongation factor NusA [Bradyrhizobium sp. BTAi1] gi|146403852|gb|ABQ32358.1| NusA antitermination factor [Bradyrhizobium sp. BTAi1] Length = 537 Score = 687 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 326/530 (61%), Positives = 411/530 (77%), Gaps = 5/530 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRRGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + ++A IEGFDEETA E+Q RARE+LE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLAGIEGFDEETATELQTRAREFLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478 + L+ K +ELGV + + ++PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K Sbjct: 423 QEAELEAKRKELGVEDAVKTVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKDS 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA--DEEVQDAS 526 G K G L L +D E+M++ AR K GWI + +A + E +DAS Sbjct: 483 GEQTKHAGILDGLEVSRDDAEAMVMQARVKAGWISEADIAKPEAEDEDAS 532 >gi|154254057|ref|YP_001414881.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154158007|gb|ABS65224.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 536 Score = 687 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 327/519 (63%), Positives = 409/519 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR+VV+ MA++IQKAARS YG ++IR INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREVVIEAMAEAIQKAARSRYGAENEIRARINPQTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV+ VEN QI LK A+ R+P+ +G ++ D LPP+DFGR+A Q+AKQVI+QK Sbjct: 63 LVRLLEVVDTVENDAVQIDLKSAQRRNPAAQLGDLIEDELPPVDFGRIAAQTAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY E+KD++GEI++G VKRVEYGNVIVDLG + ++RRDE + RE R GDR Sbjct: 123 VRDAERERQYDEYKDRIGEIVNGIVKRVEYGNVIVDLGRGEAIVRRDELLPRETFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVRREQRGPQ+ LSR+HPQFM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRREQRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++N L PA V KVVL Sbjct: 243 LSNDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSPDAATFIVNGLAPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ +F RT Sbjct: 303 DEDAQRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQAEFLSRTAT 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A++VDE+IA LL +EGFA +EE+A V + EIA IEGFDE+TA EIQ RA EY+E + Sbjct: 363 FAEALDVDEMIAQLLASEGFASIEEVAYVDLDEIAEIEGFDEDTAQEIQSRALEYIERQN 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGV++E+ +PG+ K+ VA GEN +KT+EDLAGC+ DDL+GW+E G Sbjct: 423 AEFDAKRRELGVADEVADVPGVTPKMMVAFGENDVKTVEDLAGCATDDLIGWNETVNGER 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 + G + ++ +I+ AR K GWI + +A + Sbjct: 483 KHQQGIIEGFDLTAEEANDLIMQARLKAGWITEADLASD 521 >gi|299133375|ref|ZP_07026570.1| transcription termination factor NusA [Afipia sp. 1NLS2] gi|298593512|gb|EFI53712.1| transcription termination factor NusA [Afipia sp. 1NLS2] Length = 535 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 327/518 (63%), Positives = 407/518 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISLK A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVETVENAANQISLKDAQRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+ Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGF+ VEELA V + E+A IEGFDEETA E+Q RAREYLE +D Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELALVDVRELAGIEGFDEETANELQSRAREYLEQLD 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L+ K +ELGV + L IPG+ K+ V GEN +KT+EDLAGC+ DDL+GW E K G Sbjct: 424 AELEAKRKELGVDDALKDIPGVTGKMLVKFGENDVKTVEDLAGCATDDLVGWVERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 K GFL + T +D+ E++I+ AR GWI + +A Sbjct: 484 VKHAGFLDASETSRDEAEAIIMQARLAAGWITEADLAK 521 >gi|154244252|ref|YP_001415210.1| transcription elongation factor NusA [Xanthobacter autotrophicus Py2] gi|154158337|gb|ABS65553.1| NusA antitermination factor [Xanthobacter autotrophicus Py2] Length = 531 Score = 686 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 314/512 (61%), Positives = 405/512 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI +IN +TG++ Sbjct: 4 VSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINAKTGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK Sbjct: 64 LARHLLVVDEVENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G++++G VKRVEYGNV+VDLG +G++RRDE + RE ++ GDR Sbjct: 124 VREAERDRQYDEYKDRIGDVVNGLVKRVEYGNVVVDLGRGEGILRRDELLPRETVKTGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV Sbjct: 184 IRAYVYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLA+QLTGW IDI+TE+E+S RQK+F ERT+ Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+++DE++ LL +EGF VEE+A V++ E+ASIEGFDE+TA E+Q RA ++L ++ Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVQLQELASIEGFDEDTAAELQARALKHLAEVE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + ELGV ++L S+PG+ SK+ VA GEN IK++EDLAGC+ DDL+GW+E K G Sbjct: 424 EALDARRIELGVDDDLKSVPGVTSKMLVAFGENDIKSVEDLAGCATDDLIGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G L ++ E++++ AR GWIE Sbjct: 484 VRHAGALDGFELSREDAEALVMQARVAAGWIE 515 >gi|115522227|ref|YP_779138.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisA53] gi|115516174|gb|ABJ04158.1| NusA antitermination factor [Rhodopseudomonas palustris BisA53] Length = 538 Score = 686 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 331/529 (62%), Positives = 412/529 (77%), Gaps = 5/529 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISL A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LTRHMLVVEQVENSANQISLVDAQRANPGAMIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFENST 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V E+ASIEGFD+ETA E+Q RAREYLE Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELALVDARELASIEGFDDETAGELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ K +ELGV +EL ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 424 LESELEAKRKELGVEDELKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483 Query: 480 --NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE-EVQDA 525 KF G L + + E++I+ AR K GWI + ++A E +DA Sbjct: 484 VAEPVKFPGILDANEISRADAEALIMQARVKAGWITEAELAQTVEGEDA 532 >gi|90422002|ref|YP_530372.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB18] gi|90104016|gb|ABD86053.1| NusA antitermination factor [Rhodopseudomonas palustris BisB18] Length = 541 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 325/519 (62%), Positives = 407/519 (78%), Gaps = 3/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVEEVEN + QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVEEVENSSNQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + E+ASIEGFD+ETA E+Q RAREYLE Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDVRELASIEGFDDETANELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 ++ L+ K +ELGV + L ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 424 LESELEAKRKELGVEDALKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G KF G L + + E++I+ AR GWI + + Sbjct: 484 GEPVKFPGILDANEISRADAETLIMQARVIAGWITEADL 522 >gi|92115662|ref|YP_575391.1| transcription elongation factor NusA [Nitrobacter hamburgensis X14] gi|91798556|gb|ABE60931.1| NusA antitermination factor [Nitrobacter hamburgensis X14] Length = 536 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 322/524 (61%), Positives = 408/524 (77%), Gaps = 2/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV+E+EN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LTRHMLVVDEIENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + V+RRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVVRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEEL V+ E+A IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMEALNVDEVVGQLLASEGFMSVEELTLVETRELAGIEGFDDETANELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELDNRRKELGVDDALKTVPGVTSKMLVKLGENEVRTVEDLAGCATDDLVGWTERKDG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 K G+L + ++ E++I+ AR GWI + +A + Sbjct: 484 EAVKHAGYLDGIEVSREDAEAIIMQARLIAGWITEADLAKSAEE 527 >gi|170740831|ref|YP_001769486.1| NusA antitermination factor [Methylobacterium sp. 4-46] gi|168195105|gb|ACA17052.1| NusA antitermination factor [Methylobacterium sp. 4-46] Length = 544 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 327/525 (62%), Positives = 407/525 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VVE+VEN +I L+ AR +P+ IG V++D LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVEQVENDAREIDLETARRHNPAAQIGDVIADTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AERDRQY E+KD++GEI++G VKRVEYGN IVDLG +G++RRDE+I RE RPGD Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNTIVDLGRGEGIVRRDESIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FMQA++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RA+EYL I Sbjct: 363 TFMQALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQSRAQEYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN ++T+EDLAGC+ DDL+G++E +G Sbjct: 423 EAENDARRRELGVEDELREIDGITTPMMVALGENEVRTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G+L + + E+MI+ AR + GWIE + A E + A Sbjct: 483 AVRHPGYLDGFDLSRAEAEAMIVAARVRAGWIEAPEEAPAEDEQA 527 >gi|85714177|ref|ZP_01045166.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] gi|85699303|gb|EAQ37171.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] Length = 535 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 321/527 (60%), Positives = 408/527 (77%), Gaps = 2/527 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV++VEN QISLK A+ +P +G ++D LPP+++GR++ QSAKQVI+QK Sbjct: 64 LTRHMLVVDQVENAANQISLKDAQRANPGAQVGDTIADTLPPLEYGRISAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMEALNVDEVVGQLLASEGFTSVEELTLVDAREIAGIEGFDDETANELQNRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + + ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELENRRKELGVDDAMKTVPGVTSKMLVKLGENDVRTVEDLAGCATDDLIGWTERKEG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 K G+ + ++ E++I+ AR GWI + +A A+ Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLIAGWITEADLAKPAEAVAT 530 >gi|296448218|ref|ZP_06890114.1| transcription termination factor NusA [Methylosinus trichosporium OB3b] gi|296254258|gb|EFH01389.1| transcription termination factor NusA [Methylosinus trichosporium OB3b] Length = 555 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 329/524 (62%), Positives = 418/524 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP++G++ Sbjct: 3 VSANRLEILQIADAVAREKSIDRQIVIASMEDALQKAARSRYGQETEVRAEINPKSGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+ V+N QIS++ AR R+P+ +G +S+ LPP DFGR+A QSAKQ+I+QK Sbjct: 63 FSRLLLVVDLVDNDATQISIEDARKRNPAAQVGDWISETLPPFDFGRIAAQSAKQIIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG + +IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEAIIRRDEMIPRETFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ +++VK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDNVIEVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL Sbjct: 243 ISRDSSIDPVGACVGMRGSRVQAVVGELQGERIDIIPWSADAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ++F ERT+ Sbjct: 303 DEDTARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQREFIERTKV 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM AI+VDE++ LL +EGF VE+LA V ++E+A+IEGFDE+TA EIQ RAR YLE ++ Sbjct: 363 FMNAIDVDEVVGRLLASEGFTSVEDLAFVDLAELATIEGFDEDTAAEIQNRARNYLERVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + +ELGV +EL I GI + I V LGEN +K++EDLAGC DDL+GW+E K G Sbjct: 423 AENEARRKELGVLDELKEIDGITTAIMVKLGENDVKSIEDLAGCVPDDLVGWTEKKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 K GFL + +++ E+MI+ AR + GWIE A+E ++A Sbjct: 483 IKQTGFLDGVDISREEAEAMIMAARVRAGWIEAPAPAEESGEEA 526 >gi|220924484|ref|YP_002499786.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060] gi|219949091|gb|ACL59483.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060] Length = 536 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 325/525 (61%), Positives = 408/525 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R + VV++VEN +I L+ AR +P+ +G V++D LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHMLVVDQVENDAREIDLETARRHNPAAQVGDVIADTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AERDRQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE+I RE RPGD Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNVIVDLGRGEGIVRRDESIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFIERTN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RAR+YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQTRARDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + +ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 ESENDARRKELGVSDELREIDGITTPMLVALGENDVKTIEDLAGCATDDLVGYTEGRGAE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G+L + + E+MI+ AR + GWIE A E + A Sbjct: 483 AVRHAGYLDGFDLSRAEAEAMIVAARVRAGWIEAAPEAPAEDEQA 527 >gi|188582066|ref|YP_001925511.1| NusA antitermination factor [Methylobacterium populi BJ001] gi|179345564|gb|ACB80976.1| NusA antitermination factor [Methylobacterium populi BJ001] Length = 560 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 320/524 (61%), Positives = 405/524 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P++G + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDPKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I G+ + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGVTTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + G+L + + E++I+ AR GWIE + E D Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLHAGWIEALPEPEGEAAD 526 >gi|86747724|ref|YP_484220.1| transcription elongation factor NusA [Rhodopseudomonas palustris HaA2] gi|86570752|gb|ABD05309.1| NusA antitermination factor [Rhodopseudomonas palustris HaA2] Length = 539 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 327/521 (62%), Positives = 408/521 (78%), Gaps = 4/521 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVENVENPANQISLKAAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR Sbjct: 123 VREAERDRQYSEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELALVDIRELASIEGFDEETATELQARASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ ++ + ELGV + L +PGI SKI V LGE +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 VETEMEARRLELGVEDALKDVPGITSKILVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482 Query: 480 -NIEKFDGFLSSL-GTPKDQVESMIIHARYKMGWIEKEKVA 518 KF G L + G +D+ E +I+ AR K GWI +E++A Sbjct: 483 AEPVKFAGILDGVEGVTRDEAEDLIMQARVKAGWITEEELA 523 >gi|75674221|ref|YP_316642.1| transcription elongation factor NusA [Nitrobacter winogradskyi Nb-255] gi|74419091|gb|ABA03290.1| NusA antitermination factor [Nitrobacter winogradskyi Nb-255] Length = 538 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 323/526 (61%), Positives = 409/526 (77%), Gaps = 3/526 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR++ QSAKQVI+QK Sbjct: 64 LTRHMLVVEQVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRISAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ +NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMETLNVDEVVGQLLASEGFTSVEELTLVDTREIAGIEGFDDETATELQNRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELENRRKELGVDDALKTVPGVTSKMLVKLGENEVRTIEDLAGCATDDLVGWTERKEG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA-DEEVQD 524 K G+ + ++ E++I+ AR +GWI + +A E +D Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLSVGWINEADLAKPAEAED 529 >gi|170750127|ref|YP_001756387.1| NusA antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656649|gb|ACB25704.1| NusA antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 545 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 320/513 (62%), Positives = 401/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P+TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIDAMEEAIAKAARSRYGAETDVHAEIDPKTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQFDEYKDRIGEILNGIVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++SY++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRSYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDEATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V I E++ I+G DEET EIQ RA+++L I Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAYVDIQELSGIQGLDEETGTEIQARAQDHLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G + Sbjct: 423 EQAHDARRTELGVSDELREIEGITTPMMVALGENDVKTVEDLAGCATDDLVGYTEGRGPD 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR K GWIE Sbjct: 483 AVRHAGYLDGFDLSRAEAEALIMAARLKAGWIE 515 >gi|91974715|ref|YP_567374.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB5] gi|91681171|gb|ABE37473.1| NusA antitermination factor [Rhodopseudomonas palustris BisB5] Length = 540 Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 322/525 (61%), Positives = 410/525 (78%), Gaps = 3/525 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV++VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVDKVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G++++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDVVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFQQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELAMVDIRELASIEGFDEETATELQARAAEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + L +PG+ SK+ V LGE +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 VETELEARRQELGVEDALKDVPGVTSKMLVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 K+ G L + +D E +I+ AR K GWI +E++A + Sbjct: 483 AEPVKYAGILDGVEMTRDDAEHLIMQARVKAGWITEEELAQTADK 527 >gi|254471028|ref|ZP_05084431.1| N-utilization substance protein A [Pseudovibrio sp. JE062] gi|211960170|gb|EEA95367.1| N-utilization substance protein A [Pseudovibrio sp. JE062] Length = 572 Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 327/515 (63%), Positives = 411/515 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ + D+IQKAARS YGT +++R EINP+TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRSIVIAALEDAIQKAARSRYGTETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +I+L A++R+P IG ++DPLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVEVVENISTEIALVDAQERNPDATIGDFMADPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERD+QY EFKD++GE+++ VKRVEYGNV+VD G + ++RRDE I RE R GDR Sbjct: 123 VREAERDQQYDEFKDRIGEVLNAVVKRVEYGNVVVDTGKGEAIVRRDELIPREIFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ I+DVRREQRGPQV LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV Sbjct: 183 IRALIFDVRREQRGPQVFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V KVVL Sbjct: 243 LSNDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDDAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F R+ Sbjct: 303 DEDSERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWGIDIMTEAEESERRQKEFQIRSDL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +NVDE+++ LL +EGF VEE+A V I EI+SIEGFDEETA EIQ RAREYLE + Sbjct: 363 FQNTLNVDEMVSQLLASEGFTSVEEVAYVDIDEISSIEGFDEETADEIQARAREYLEEQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ R+LGVSEEL +PG+ S + VALG++ IKTMEDLAGC+ DDL+GW+E K Sbjct: 423 AKLAEERRQLGVSEELVQVPGLTSAMLVALGKDEIKTMEDLAGCAADDLVGWTERKDKET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + +G LS + E++++ AR GWI E Sbjct: 483 IRVEGTLSGFDLSRADAEAIVMSARVAAGWISPED 517 >gi|240139447|ref|YP_002963922.1| transcription termination/antitermination L factor [Methylobacterium extorquens AM1] gi|240009419|gb|ACS40645.1| transcription termination/antitermination L factor [Methylobacterium extorquens AM1] Length = 545 Score = 677 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 321/527 (60%), Positives = 406/527 (77%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE--KEKVADEEVQDA 525 + G+L + + E++I+ AR K GWI+ E + DA Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEASEGDA 529 >gi|218530876|ref|YP_002421692.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4] gi|254561862|ref|YP_003068957.1| transcription termination/antitermination L factor [Methylobacterium extorquens DM4] gi|218523179|gb|ACK83764.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4] gi|254269140|emb|CAX25104.1| transcription termination/antitermination L factor [Methylobacterium extorquens DM4] Length = 545 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 321/527 (60%), Positives = 406/527 (77%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE--KEKVADEEVQDA 525 + G+L + + E++I+ AR K GWI+ E + DA Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEAAEGDA 529 >gi|163852118|ref|YP_001640161.1| transcription termination factor NusA [Methylobacterium extorquens PA1] gi|163663723|gb|ABY31090.1| transcription termination factor NusA [Methylobacterium extorquens PA1] Length = 545 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 321/527 (60%), Positives = 406/527 (77%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE--KEKVADEEVQDA 525 + G+L + + E++I+ AR K GWI+ E + DA Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEAAEGDA 529 >gi|126728006|ref|ZP_01743822.1| transcription elongation factor NusA [Sagittula stellata E-37] gi|126710971|gb|EBA10021.1| transcription elongation factor NusA [Sagittula stellata E-37] Length = 538 Score = 675 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 288/519 (55%), Positives = 383/519 (73%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVQQAKQYMADPKVGDTFVEEVPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK Sbjct: 183 GDRIRCYVKDVRRETRGPQIFLSRTAPEFMRELFKMEVPEIYDGIIEVKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+ IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNGIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA+EYLE Sbjct: 363 TQLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEMDELLVIDGVDEGTAAELQTRAQEYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + RELG + L + G+ ++ VAL E+G+KT+ED A C+ +L G + Sbjct: 423 EQARQAEARARELGADDSLLAFEGLTPQMVVALAEDGVKTLEDFATCADWELAGGWTTQD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L G D+ ++M++ AR +GW++ E++ Sbjct: 483 GQRVKDDGLLEKFGIDLDEAQNMVMTARVMLGWVDPEEL 521 >gi|146278788|ref|YP_001168947.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC 17025] gi|145557029|gb|ABP71642.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17025] Length = 534 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 285/516 (55%), Positives = 382/516 (74%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ VEN+ QI++K A+ IG + D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDEAVENHHAQITVKQAKSYKSDPQIGDEIIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRKGSIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE Sbjct: 363 TNLFMETPGIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LG+ + L + G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 EANRKALESARALGLEDSLANFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K +G L ++ + +++ AR +GW++ Sbjct: 483 GQRVKDEGVLEKFDVSLEEAQHLVMTARVMLGWVDP 518 >gi|56694991|ref|YP_165337.1| transcription elongation factor NusA [Ruegeria pomeroyi DSS-3] gi|56676728|gb|AAV93394.1| transcription termination factor NusA [Ruegeria pomeroyi DSS-3] Length = 541 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 280/516 (54%), Positives = 370/516 (71%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV EE+ENY + ++ A+ + IG + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADEELENYQAEFTVDQAKQYMENPQIGDTFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEESARRQKEFESR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TNLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQAKAALDNARALGAEDSLIQFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L G + + M++ AR +GW++ Sbjct: 483 GQRVKDDGILEPFGVSLEDAQDMVMTARVMLGWVDP 518 >gi|119385319|ref|YP_916375.1| transcription elongation factor NusA [Paracoccus denitrificans PD1222] gi|119375086|gb|ABL70679.1| NusA antitermination factor [Paracoccus denitrificans PD1222] Length = 559 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 292/548 (53%), Positives = 382/548 (69%), Gaps = 23/548 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV I+ +TG+ Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIEAMEDSLARAAKSRYGSEMDIRVHIDRKTGNA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVAR---------------------DRDPSIDIGGVV 97 + R VVE+ VENY Q + A D G V Sbjct: 63 TFTRARTVVEDEAVENYQAQFTADQAAPYFEPSKDGRAHWLRDGAQLADFSGRPQPGDVF 122 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + +PP+D GR+A QSAKQVI+Q+VREAERDRQY EFKD+VG II+G VKR EYGN+IVD Sbjct: 123 EEQVPPVDLGRIAAQSAKQVILQRVREAERDRQYEEFKDRVGSIINGVVKREEYGNIIVD 182 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 +G + ++RR+E I RE+ RP DR+++Y+ DVRRE RGPQ+ LSRT PQFM +LF MEVP Sbjct: 183 VGRGEAILRRNEKIGRESYRPNDRIRAYVKDVRREARGPQIFLSRTDPQFMAELFKMEVP 242 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+G++++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ Sbjct: 243 EIYDGVIEIKAVARDPGSRAKIAVISYDNSIDPVGACVGMRGSRVQAVVGELQGEKIDII 302 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ATF++NAL+PA V KVV DED RIEV+VP EQLSLAIGRRGQNVRLASQLTG Sbjct: 303 PWSDDQATFLVNALQPAEVAKVVFDEDATRIEVVVPDEQLSLAIGRRGQNVRLASQLTGL 362 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI+TEEE+S RQ +FN RT+ FM A+++DE A LLVAEGF ++EE+A V + E+ S Sbjct: 363 DIDILTEEEESKRRQAEFNARTKLFMDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLS 422 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 IEG DE TA E+Q RARE+LE + + R LGV + L G+ ++ AL ++G+K Sbjct: 423 IEGVDEGTAEELQTRAREHLEAANKAALENARALGVEDSLIEFEGLTPQMVEALAKDGVK 482 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 T+ED A C+ +L G + G K DG L ++ ++M++ AR +GW++ ++ Sbjct: 483 TLEDFATCADWELAGGWTTQNGQRVKDDGILEPFDVSLEEAQTMVMTARVMLGWVDPTEL 542 Query: 518 ADEEVQDA 525 + +A Sbjct: 543 ESADEAEA 550 >gi|260429111|ref|ZP_05783088.1| NusA antitermination factor [Citreicella sp. SE45] gi|260419734|gb|EEX12987.1| NusA antitermination factor [Citreicella sp. SE45] Length = 543 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 289/516 (56%), Positives = 379/516 (73%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVKIDRRTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++K A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVKQAKQYMADPKVGDQFIEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRAGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTSPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F +R Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEQR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G DE+TA E+Q RARE+LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDEDTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + RELG + L G+ ++ AL E+G+KT+ED A C+ +L G +G Sbjct: 423 EQARKALEHARELGAEDSLIEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L + +++I+ AR +GW++ Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVDP 518 >gi|77464744|ref|YP_354248.1| transcription elongation factor NusA [Rhodobacter sphaeroides 2.4.1] gi|126463584|ref|YP_001044698.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC 17029] gi|221640658|ref|YP_002526920.1| transcription elongation factor NusA [Rhodobacter sphaeroides KD131] gi|332559637|ref|ZP_08413959.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N] gi|77389162|gb|ABA80347.1| N-utilization substance protein A [Rhodobacter sphaeroides 2.4.1] gi|126105248|gb|ABN77926.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221161439|gb|ACM02419.1| NusA antitermination factor [Rhodobacter sphaeroides KD131] gi|332277349|gb|EGJ22664.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N] Length = 535 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 284/516 (55%), Positives = 383/516 (74%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +EN+ Q+++K AR IG + D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDELIENHHAQVTVKQARSYLADPKIGDEIIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRKGTIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE Sbjct: 363 TNLFMETLDIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LG+ + L G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 EANRKALESARALGLEDSLAGFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K +G L ++ + +++ AR +GW++ Sbjct: 483 GQRVKDEGVLEKFDVSLEEAQHLVMTARVMLGWVDP 518 >gi|300024995|ref|YP_003757606.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299526816|gb|ADJ25285.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 543 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 330/531 (62%), Positives = 419/531 (78%), Gaps = 6/531 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EK+ID+ +V+ M D+IQKAA+S YG +DIR EI+P+TG+ Sbjct: 6 ISANRLELLQIADAVAREKTIDKKIVIEAMEDAIQKAAKSRYGAENDIRCEIDPKTGEAK 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R+L VVE VEN QI+++ A+ R+P G ++++ LPP++FGRVA Q+AKQVI+QK Sbjct: 66 LTRVLAVVEAVENDATQITVEDAKKRNPEAKAGDMIAETLPPLEFGRVAAQNAKQVIVQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ E+KD+VG+ +GTVKRVEYGNVIVDLG ++G+IRRDE I REN+R GDR Sbjct: 126 VREAERDRQFAEYKDRVGDTTNGTVKRVEYGNVIVDLGRAEGIIRRDEMIPRENVRLGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++IYDVRREQRGPQ+ L+R P+FM LF EVPEIY+G+V++K+V+RDPGSRAK+AV Sbjct: 186 IRAFIYDVRREQRGPQIFLTRARPEFMSSLFRAEVPEIYDGVVEIKSVARDPGSRAKIAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRG+RVQAVV EL+ EK+DI+ W+PD+A+F++NAL PA VTKVVL Sbjct: 246 ISKDSSIDPVGACVGMRGARVQAVVNELQGEKVDIIQWNPDAASFIVNALAPAEVTKVVL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP+ QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERTQ Sbjct: 306 DEDSNRIEVVVPEAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTQL 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M A++VDE+IA LLV EGFA VEE+A V ISEIA IEGFDE TA +IQ RARE++E + Sbjct: 366 LMDALDVDEVIAQLLVTEGFASVEEVAYVDISEIAHIEGFDEGTAEQIQIRAREFIEQQE 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG-- 479 K RELGV++EL IPGI++ + VALGENGIKT+ED A C+ D+L+GW++ K Sbjct: 426 AERDAKRRELGVADELAEIPGINTAMMVALGENGIKTVEDFADCATDELVGWTDRKKDKD 485 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV---ADEEVQDAS 526 K GFL + VE+MI+ AR GWI+ E + A+ E + AS Sbjct: 486 TEPVKHKGFLDGFELSRTDVENMIMAARVHAGWIKAEDLQKPAEGEPEAAS 536 >gi|312115896|ref|YP_004013492.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311221025|gb|ADP72393.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 581 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 325/511 (63%), Positives = 405/511 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +VLS M D+IQKAA+S YG+ ++IR EI+P TG+I Sbjct: 6 ISANRLELLQIADAVAREKSIDRTLVLSAMEDAIQKAAKSRYGSENEIRAEIDPRTGEIR 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE V +ISLK A R+P ++G +++PLPP+DFGRVA Q+AKQVI+QK Sbjct: 66 LSRLLEVVERVTLDATEISLKDAMKRNPEAEVGDFIAEPLPPLDFGRVAAQNAKQVIVQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER+RQ+ E+KD++ EI+SG VKR EYGNV++DLG ++ +IRRDET+ REN + GDR Sbjct: 126 VREAERERQFEEYKDRMSEIVSGVVKRAEYGNVMIDLGRAEAIIRRDETLPRENYKLGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRRE RGPQ+ LSRT P+FM KLF EVPEIY+GIV++K+V+RDPGSRAK+AV Sbjct: 186 VRAYVYDVRRENRGPQIFLSRTRPEFMAKLFAQEVPEIYDGIVEIKSVARDPGSRAKIAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S ++S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V KVVL Sbjct: 246 VSKETSVDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSGDPATFIVNALAPAEVAKVVL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGR+GQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 306 DEESERIEVVVPDEQLSLAIGRKGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTAA 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VDE+IA LLV+EGFA VEELA V E+A IEGFDE TA+EIQ RARE+LE + Sbjct: 366 FVNALDVDEMIAQLLVSEGFASVEELAFVDSHEVAIIEGFDENTALEIQERAREFLERQE 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K R LGV++EL +PG+ + + VA GEN IKT+EDLA C+ D+L GW+E G Sbjct: 426 AELNEKRRALGVADELAEVPGVTTAMLVAFGENNIKTVEDLADCATDELAGWTERAHGQT 485 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ G L K +E +II AR K GWI Sbjct: 486 KQNPGILQGFDLSKSDIEHLIIAARVKAGWI 516 >gi|159046101|ref|YP_001534895.1| transcription elongation factor NusA [Dinoroseobacter shibae DFL 12] gi|157913861|gb|ABV95294.1| transcription elongation protein nusA [Dinoroseobacter shibae DFL 12] Length = 544 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 287/526 (54%), Positives = 384/526 (73%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRGEGVLRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++A++VDE++A LLV+EGF ++EE+A V+ E+ I+GFDE+TA E+Q RARE+LE Sbjct: 363 TNMFVEALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ RE+GV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 EQAKKALERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K +G L ++ + +++ AR ++GW+ E + EE D Sbjct: 483 GERVKDEGVLEKFDVSLEEAQLLVMTARVQLGWVNPEDLEIEEDAD 528 >gi|260576186|ref|ZP_05844179.1| NusA antitermination factor [Rhodobacter sp. SW2] gi|259021666|gb|EEW24969.1| NusA antitermination factor [Rhodobacter sp. SW2] Length = 533 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 285/519 (54%), Positives = 382/519 (73%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGAELDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +EN+ Q++LK A P +G V D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDEALENHHAQLTLKQAVAIKPDAVVGDEVIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRKGSIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+I V+VP EQLSLAIGRRGQNVRLASQLT IDI+TE +DS RQ +F ER Sbjct: 303 VVIDEEAGKIVVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIVTETDDSARRQAEFTER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE++A LLV+EGF ++EE+A V + E+ SI+GFDE TA E+Q RAR+ LE Sbjct: 363 TKLFMDTLDIDEMMAQLLVSEGFTNLEEVAYVDLDELLSIDGFDEATAGELQARARDNLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I + R LGV + L + G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 AANIKAMENARALGVEDSLVNFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K G L ++ + +++ AR +GW++ ++ Sbjct: 483 GARVKDQGVLEEFDVSLEEAQHLVMTARVMLGWVDPAEL 521 >gi|114762088|ref|ZP_01441556.1| transcription elongation factor NusA [Pelagibaca bermudensis HTCC2601] gi|114545112|gb|EAU48115.1| transcription elongation factor NusA [Roseovarius sp. HTCC2601] Length = 542 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 288/516 (55%), Positives = 376/516 (72%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVIEAMEESLARAAKSRYGSEMDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++K A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVKQAKQYMADPQVGDQYVEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE RP Sbjct: 123 LQKVREAERDRQYDEFKDRNGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IGVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G D++TA E+Q RARE+LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDDDTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 RELG + L G+ ++ AL E+G+KT+ED A C+ +L G Sbjct: 423 EQARKALAHARELGAEDSLIEFDGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L + +++I+ AR +GW++ Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVDP 518 >gi|307942744|ref|ZP_07658089.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4] gi|307773540|gb|EFO32756.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4] Length = 559 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 332/522 (63%), Positives = 425/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V+S M D+IQKAARS YGT +++R EINP+TGDI Sbjct: 3 ISANRLELLQIADAVAREKSIDRTIVISAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +I+++ AR R+P +G ++DPLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVEVVENVSTEIAVEDARQRNPEAALGDFIADPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGE+I+G VKR EYGNVIVDLG ++ ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEVINGVVKRAEYGNVIVDLGRAEAIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++++ V+RDPGSRAK+AV Sbjct: 183 IRAYIHDVRREQRGPQIFLSRTHPQFMAKLFTSEVPEIYDGVIEIRTVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDPATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFVERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD+ETA EIQ RAR+YLE ++ Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDETAEEIQARARDYLEELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + +ELGVS++L SI G+ + VALG++ +K+MEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDAERQELGVSDDLRSIDGLTLAMMVALGKDDVKSMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 ++++G LS+ + + E+M++ AR GWI +E++A + + Sbjct: 483 KRYEGALSAFDLSRAEAEAMVMAARVAAGWITEEELAAQNAE 524 >gi|310817128|ref|YP_003965092.1| transcription elongation factor NusA [Ketogulonicigenium vulgare Y25] gi|308755863|gb|ADO43792.1| transcription elongation factor NusA [Ketogulonicigenium vulgare Y25] Length = 533 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 279/515 (54%), Positives = 375/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKLIDPSLVVEAMEESLARAAKSRYGADMDIRVHIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VVE+ VENY ++++ A+ + ++G + + +PP+D GR+A QSAKQVI Sbjct: 63 HFSRVRTVVEDDAVENYHAEMTVDQAKLYMSNPEVGDIFEEEIPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QK+REAERDRQY EFK + G II+GTVKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKIREAERDRQYEEFKHRQGTIINGTVKREEYGNLIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCYVKDVRREVRGPQIFLSRTAPEFMRELFKMEVPEIYEGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVLSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDMPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE E+S RQ +F R Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTNLDIDIMTESEESKRRQAEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLVAEGF ++EE+A V + E+ +IEG DE TA E+Q RAR+++E Sbjct: 363 TKLFMETLDLDEFFAQLLVAEGFTNLEEVAYVDLDELTTIEGVDEATAGEVQARARDHIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LG + L S PG+ ++ AL ++G+KT+ED A C+ +L G Sbjct: 423 SQNEKALEAARALGAEDSLISFPGLTPQMVEALAKDGVKTLEDFATCADWELAGGWTTVE 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L ++ ++MI+ AR +GW++ Sbjct: 483 GKRVKDDGVLEPFDLSLEEAQTMIMTARVSLGWVD 517 >gi|84684618|ref|ZP_01012519.1| transcription elongation factor NusA [Maritimibacter alkaliphilus HTCC2654] gi|84667597|gb|EAQ14066.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2654] Length = 539 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 277/519 (53%), Positives = 377/519 (72%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ + +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDNPVVGDTIVDEVPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYVKDVRRETRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V K Sbjct: 243 IGVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVAK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR++L+ Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTANELQARARDFLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + + LGV + L G+ ++ AL ++G+ T+ED A C+ +L G Sbjct: 423 EQNRKALENAKALGVQDSLIGFEGLTPQMIEALAKDGVFTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L ++ ++MI+ AR ++GW++ + Sbjct: 483 GERSKDDGVLEPFDVGLEEAQNMIMTARIQLGWVDPADL 521 >gi|126724629|ref|ZP_01740472.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2150] gi|126705793|gb|EBA04883.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2150] Length = 534 Score = 665 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 282/517 (54%), Positives = 380/517 (73%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + R+ VVEEVENY + +++ A+ ++G V+D +PP++ GR+A QSAKQVI+Q Sbjct: 63 TFTRVRTVVEEVENYQAEFTVEEAKPYKADAEVGDEVTDEVPPVEMGRIAAQSAKQVILQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+REAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP D Sbjct: 123 KIREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGVLRRNEKIGRESYRPND 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+ +KAV+RDPGSRAK+A Sbjct: 183 RIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIDIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVV Sbjct: 243 VISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +FNERT Sbjct: 303 LDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESKRRQAEFNERTG 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A+++DE A LLVAEGF +EE+A V++ E+ I+G DE TA E+Q RAR+Y+E + Sbjct: 363 LFMEALDLDEFFAQLLVAEGFRTLEEVAYVEVDELLVIDGVDEGTAGELQARARDYIEAL 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ ELGV + L G+ ++ AL E+G+ ++ED A C+ +L G G Sbjct: 423 NKKALERAVELGVVQSLIDFEGLTPQMIEALAEDGVLSLEDFATCADWELAGGWTTVDGE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 K DG L ++ ++M++ AR ++GW++ + Sbjct: 483 RVKDDGVLEKFDVALEEAQNMVMTARIQLGWVDPADL 519 >gi|149202949|ref|ZP_01879920.1| transcription elongation factor NusA [Roseovarius sp. TM1035] gi|149143495|gb|EDM31531.1| transcription elongation factor NusA [Roseovarius sp. TM1035] Length = 540 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 283/519 (54%), Positives = 380/519 (73%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVNIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VVE+ VENY ++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 KFTRVRTVVEDEAVENYQAEMTVAQAKQYLDDPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD++G II+G VKR EYGNVIVD+G + ++RR+E I RE RP Sbjct: 123 LQKVREAERDRQFEEFKDRLGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ A+++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFVDALDLDEFFAQLLVSEGFTNLEEVAYVDVDELLVIDGVDEDTAAELQARARDMIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L G Sbjct: 423 AQAKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K +G L ++ ++M++ AR +GW++ ++ Sbjct: 483 GERVKDEGILEKFDVSLEEAQNMVMTARVMLGWVDPTEL 521 >gi|84514878|ref|ZP_01002241.1| transcription elongation factor NusA [Loktanella vestfoldensis SKA53] gi|84511037|gb|EAQ07491.1| transcription elongation factor NusA [Loktanella vestfoldensis SKA53] Length = 533 Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 281/518 (54%), Positives = 371/518 (71%), Gaps = 2/518 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG + Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVNIDRKTGRAT 63 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 R+ VV + VENY + ++ A+D IG S+ +PP++ GR+A QSAKQVI+ Sbjct: 64 FTRVRTVVADDAVENYQAEFTVAQAKDYMTDPQIGQEYSEEVPPVELGRIAAQSAKQVIL 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G+ + V+RR+E I RE RP Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGSGEAVLRRNEKIGREAYRPN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ YI +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK+ Sbjct: 184 DRIRCYIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGVIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTKV Sbjct: 244 AVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVTKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ G+IEV+VP EQLSLAIGRRGQNVRLAS LTG IDI+TEEE+S RQ +F RT Sbjct: 304 VLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASMLTGLDIDILTEEEESKRRQAEFETRT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +++DE A LLVAEGF ++EE+A V+ E+ IEG DE TA E+Q RAR+YLE Sbjct: 364 KLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVEQDELLVIEGVDEGTAGELQARARDYLEA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 GV + L G+ ++ ALG++G+KT+ED A C+ +L G G Sbjct: 424 QAKKAMDAAIATGVEQSLIDFEGLTPQMLEALGKDGVKTLEDFATCADWELAGGWTTVNG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 K DG L ++ ++M++ AR +GW++ +++ Sbjct: 484 ERVKDDGVLEPFDVSLEEAQTMVMTARVMLGWVDPDEL 521 >gi|84500726|ref|ZP_00998975.1| transcription elongation factor NusA [Oceanicola batsensis HTCC2597] gi|84391679|gb|EAQ04011.1| transcription elongation factor NusA [Oceanicola batsensis HTCC2597] Length = 536 Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 286/516 (55%), Positives = 376/516 (72%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ AR +G ++ +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQARQYMADPQVGDTFTEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNIIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DEETA E+Q RAR+ LE Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVEIDELLVIDGVDEETANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ RELG + L G+ ++ AL E+G+KT+ED A C+ +L G Sbjct: 423 AQAKAAMERARELGAEDSLIEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTTVE 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L ++ + M+++AR +GW++ Sbjct: 483 GERVKDDGLLEPFDVSLEEAQHMVMNARVMLGWVDP 518 >gi|294675770|ref|YP_003576385.1| transcription elongation factor NusA [Rhodobacter capsulatus SB 1003] gi|294474590|gb|ADE83978.1| transcription elongation factor NusA [Rhodobacter capsulatus SB 1003] Length = 536 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 285/519 (54%), Positives = 385/519 (74%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEDSLARAAKSRYGSEMDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 S R+ VVE+ VENY Q+++ A+ + +G + D +PP+D GR+A QSAKQVI Sbjct: 63 SFTRVRTVVEDEAVENYQAQLTVAQAKQYKTNPQLGDEIVDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFDEFKDRKGTIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+ DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYVKDVRRETRGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V K Sbjct: 243 IAVISNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNADAATFLVNALQPAEVAK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESSRRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ A+++DE A LLVAEGF ++EE+A V + E+ SIEG D+ TA E+Q RAR+Y+E Sbjct: 363 TKLFVDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLSIEGVDDGTAEELQARARDYIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +ELGV + L + G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNAKAIAAAKELGVEDSLFNFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K +G L G + + +I+ AR ++GW++ ++ Sbjct: 483 GARVKDEGILEKFGMSLEDAQKLIMTARIQLGWVDISEL 521 >gi|99082750|ref|YP_614904.1| transcription elongation factor NusA [Ruegeria sp. TM1040] gi|99039030|gb|ABF65642.1| NusA antitermination factor [Ruegeria sp. TM1040] Length = 538 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 276/525 (52%), Positives = 377/525 (71%), Gaps = 2/525 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++ A+ +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMEDPKVGDTIVDEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R +GV + L G+ ++ AL ++ +K++ED A C+ +L G Sbjct: 423 AKAKAALDNARSMGVEDSLIDFDGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G K +G L ++ +++++ AR +GW++ ++ + Sbjct: 483 GERVKDEGILEPFDVSLEEAQNLVMTARIMLGWVDPAELESDADD 527 >gi|254466388|ref|ZP_05079799.1| transcription termination factor NusA [Rhodobacterales bacterium Y4I] gi|206687296|gb|EDZ47778.1| transcription termination factor NusA [Rhodobacterales bacterium Y4I] Length = 538 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 284/516 (55%), Positives = 378/516 (73%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY +++++ AR + ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMANPEVGQTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 RELG E L G+ ++ AL ++ +K++ED A C+ +L G + G Sbjct: 423 AQAKAALDAARELGAEESLIQFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTSNG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L G ++ + M++ AR +GW++ Sbjct: 483 GERVKDDGILEPFGVSLEEAQDMVMTARIMLGWVDP 518 >gi|110677786|ref|YP_680793.1| transcription elongation factor NusA [Roseobacter denitrificans OCh 114] gi|109453902|gb|ABG30107.1| transcription termination factor NusA, putative [Roseobacter denitrificans OCh 114] Length = 538 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 276/521 (52%), Positives = 376/521 (72%), Gaps = 2/521 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDEDTANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G K DG L ++ + +I+ AR +GW++ + Sbjct: 483 GERSKDDGVLEPFDVTLEEAQDLIMTARVMLGWVDPADLEP 523 >gi|304392764|ref|ZP_07374704.1| transcription elongation protein NusA [Ahrensia sp. R2A130] gi|303295394|gb|EFL89754.1| transcription elongation protein NusA [Ahrensia sp. R2A130] Length = 553 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 317/518 (61%), Positives = 412/518 (79%), Gaps = 2/518 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+ANRLEL+QIADAVA EKSIDR +VL MAD+I+KAA++ YG ++IR +IN +TG+I Sbjct: 3 VAANRLELMQIADAVAREKSIDRKIVLDAMADAIEKAAKARYGLETNIRADINEKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL VVE+VE+ +I L A+ ++ + ++G + + LPPMDFGRVA QSAKQVI+QK Sbjct: 63 LQRLLLVVEKVEDPDTEILLADAKHKNEAAELGVHIGELLPPMDFGRVAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQ+ EF+++ GEII+GTVKRVEYGNVIVDLG ++ +IRRDE I RE R GDR Sbjct: 123 VRDAERDRQFAEFENRTGEIINGTVKRVEYGNVIVDLGRAEAIIRRDELIPREMYRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+G+++++AV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRREQRGPQIFLSRTHPQFMAKLFQMEVPEIYDGVIEIRAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DS IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS ++A F++NAL+PA V KVVL Sbjct: 243 ISNDSGIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEEAAGFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQ +F+ T Sbjct: 303 DEDKARIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESGRRQAEFSANTST 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+NVDE++ LL +EGF+D+EE+A V+ E+A IEGFD++TA E+Q RA+E+LE + Sbjct: 363 FTEALNVDEMVGQLLASEGFSDLEEVAYVEQDELAMIEGFDDDTAAELQARAKEFLEKKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGE--NGIKTMEDLAGCSVDDLLGWSENKGG 479 L K +ELGV+++L +PGI + + VALGE IK++ED AG DDL+G++E K G Sbjct: 423 QGLDAKRKELGVADDLRQVPGITTAMMVALGESDEEIKSLEDFAGSVADDLIGYNERKDG 482 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + + G LS+ G + Q + MI+ AR + GW+ +E + Sbjct: 483 ELIRHTGPLSTFGLSRVQADEMIMAARIEAGWVTEEDL 520 >gi|259417192|ref|ZP_05741111.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B] gi|259346098|gb|EEW57912.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B] Length = 538 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 276/522 (52%), Positives = 379/522 (72%), Gaps = 2/522 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY ++++ A+ S +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMESPSVGDTIVDEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R +G + L G+ ++ AL ++ +K++ED A C+ +L G Sbjct: 423 AQAKAALDNARSMGAEDSLIDFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G K +G L ++ +++++ AR +GW++ ++ + Sbjct: 483 GERVKDEGILEPFDMSLEEAQNLVMTARIMLGWVDPAELESD 524 >gi|163737947|ref|ZP_02145363.1| transcription elongation factor NusA [Phaeobacter gallaeciensis BS107] gi|163742658|ref|ZP_02150044.1| transcription elongation factor NusA [Phaeobacter gallaeciensis 2.10] gi|161384243|gb|EDQ08626.1| transcription elongation factor NusA [Phaeobacter gallaeciensis 2.10] gi|161388563|gb|EDQ12916.1| transcription elongation factor NusA [Phaeobacter gallaeciensis BS107] Length = 541 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 279/527 (52%), Positives = 379/527 (71%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDDALENYQAELTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +YLE Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LGV + L G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 AQAKAAIDAARALGVEDSLIDFDGLTPQMVEALAKDGIKTLEDFATCADWELAGGWTTNK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L + +++++ AR +GW++ ++ + DA Sbjct: 483 GERVKDDGILEPFDVSLEDAQTLVMTARVLLGWVDPTELEADAEDDA 529 >gi|163745072|ref|ZP_02152432.1| transcription elongation factor NusA [Oceanibulbus indolifex HEL-45] gi|161381890|gb|EDQ06299.1| transcription elongation factor NusA [Oceanibulbus indolifex HEL-45] Length = 542 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 279/526 (53%), Positives = 378/526 (71%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV+IN +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVDINRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E++ENY + ++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADEDLENYQAEFTVDQAKQYMAEPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF+++EE+A V++ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFSNLEEVAYVEVDELLVIDGVDEDTAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDNARALGVEDSLVEFEGLTPQMLEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K DG L + ++MI+ AR +GW++ ++ + +D Sbjct: 483 GERVKDDGALEPFEVSLEDAQAMIMTARVMLGWVDPTELEGDADED 528 >gi|126738452|ref|ZP_01754157.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6] gi|126720251|gb|EBA16957.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6] Length = 539 Score = 660 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 288/531 (54%), Positives = 387/531 (72%), Gaps = 6/531 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVTIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY +++++ AR + ++G V S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMENPEVGDVFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVEIEELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ ++ AL ++ +KT+ED A C+ +L G N G Sbjct: 423 AQAKAAIDAARALGAEDSLIQFDGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTNDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV----ADEEVQDA 525 G K DG L G ++ + +++ AR +GW++ E++ + E +DA Sbjct: 483 GERIKDDGILEPFGMSLEEAQDLVMTARIMLGWVDPEELIGDSEEAEGEDA 533 >gi|163733005|ref|ZP_02140449.1| transcription elongation factor NusA [Roseobacter litoralis Och 149] gi|161393540|gb|EDQ17865.1| transcription elongation factor NusA [Roseobacter litoralis Och 149] Length = 538 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 275/522 (52%), Positives = 377/522 (72%), Gaps = 2/522 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRAGSIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ LE Sbjct: 363 TQLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDADTANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAAIESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G K DG L ++ + +I+ AR +GW++ + + Sbjct: 483 GERSKDDGVLEPFEMTLEEAQDLIMTARVMLGWVDPADLEPD 524 >gi|254475265|ref|ZP_05088651.1| NusA antitermination factor [Ruegeria sp. R11] gi|214029508|gb|EEB70343.1| NusA antitermination factor [Ruegeria sp. R11] Length = 541 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 281/527 (53%), Positives = 380/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDDALENYQAEMTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +YLE Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LGV + L G+ ++ AL ++GIKT+ED A C+ +L G + Sbjct: 423 AQAKAAIDAARALGVEDSLIDFDGLTPQMIEALAKDGIKTLEDFATCADWELAGGWTSNK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L + +++++ AR +GW++ ++ E DA Sbjct: 483 GERVKDDGILEPFDVSLEDAQNLVMTARVLLGWVDPAELEAEAEDDA 529 >gi|149912925|ref|ZP_01901459.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b] gi|149813331|gb|EDM73157.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b] Length = 540 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 283/525 (53%), Positives = 382/525 (72%), Gaps = 2/525 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY ++++ A+ IG + +PP+D GR+A QSAKQVI Sbjct: 63 NFTRVRTVVADDELENYQAEMTVDQAKQYLDDPKIGDEFIEEIPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRV++YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRVRAYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D++TA E+Q RAR+ L+ Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDQDTANELQARARDVLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +K RELG + L G+ ++ VAL E+G+KT+ED A C+ +L G Sbjct: 423 AQAREAMEKARELGAEDSLIEFEGLTPQMIVALAEDGVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G K +G L ++ ++M++ AR +GW++ ++ + + Sbjct: 483 GQRVKDEGVLEPFEVSLEEAQNMVMTARVMLGWVDPTELEPDLEE 527 >gi|83950734|ref|ZP_00959467.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM] gi|83838633|gb|EAP77929.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM] Length = 544 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 282/516 (54%), Positives = 376/516 (72%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVEE +ENY +++++ A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEEEELENYQAELTVEQAKQYLDDPKVGDQYIEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGMVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 +R++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NERIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQ++F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQREFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEDTAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ RELGV + L G+ ++ AL E+G+KT+ED A C+ +L G + Sbjct: 423 ARAKAALERARELGVEDSLVEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTMQD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L ++ ++M++ AR +GW++ Sbjct: 483 GQRVKDDGILEPFDVSLEEAQAMVMTARVMLGWVDP 518 >gi|254486422|ref|ZP_05099627.1| transcription termination factor NusA [Roseobacter sp. GAI101] gi|214043291|gb|EEB83929.1| transcription termination factor NusA [Roseobacter sp. GAI101] Length = 537 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 279/519 (53%), Positives = 378/519 (72%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + +IG S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEIGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG TIDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLTIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+ LE Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEATAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AKNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K +G L ++ + +I+ AR +GW++ ++ Sbjct: 483 GVRTKDEGTLEPFEMTLEEAQHLIMTARVLLGWVDPAEL 521 >gi|83953120|ref|ZP_00961842.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1] gi|83842088|gb|EAP81256.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1] Length = 546 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 277/527 (52%), Positives = 381/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K +G L + + +I+ AR +GW++ ++ ++V + Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVDPAELEADDVDEE 529 >gi|85705698|ref|ZP_01036795.1| transcription elongation factor NusA [Roseovarius sp. 217] gi|85669688|gb|EAQ24552.1| transcription elongation factor NusA [Roseovarius sp. 217] Length = 539 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 283/527 (53%), Positives = 380/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRVEI+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVEIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VV + +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 KFTRVRTVVADDALENYQAEMTVEQAKQFLDDPKVGDAFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+VG II+G VKR EYGNVIVD+G + ++RR+E I RE RP Sbjct: 123 LQKVREAERDRQFEEFKDRVGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVDLDELLVIDGVDEDTAAELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L G Sbjct: 423 AQTKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K +G L ++ + M++ AR +GW++ ++ + Sbjct: 483 GERVKDEGILEKFDVSLEEAQHMVMTARVMLGWVDPTELETDADDSE 529 >gi|89067479|ref|ZP_01154992.1| transcription elongation factor NusA [Oceanicola granulosus HTCC2516] gi|89047048|gb|EAR53102.1| transcription elongation factor NusA [Oceanicola granulosus HTCC2516] Length = 542 Score = 657 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 284/526 (53%), Positives = 377/526 (71%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRRTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDDPKVGDQYIEEIPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IGVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE TA E+Q RAR+ L+ Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEGTAQELQARARDVLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +K RELGV + L + G+ + +AL E+G+KT+ED A C+ +L G Sbjct: 423 EQNRVALEKARELGVEDSLVNFEGLTPAMVLALAEDGVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K DG L ++ + M++ AR +GW++ + + E + Sbjct: 483 GERVKDDGVLEKFDVSLEEAQDMVMTARVLLGWVDPDDLMPEAAAE 528 >gi|83945005|ref|ZP_00957371.1| transcription elongation factor NusA [Oceanicaulis alexandrii HTCC2633] gi|83851787|gb|EAP89642.1| transcription elongation factor NusA [Oceanicaulis alexandrii HTCC2633] Length = 578 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 304/519 (58%), Positives = 386/519 (74%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LE+LQIA AVA EK ID +VL + ++IQKAARS YG DI +INP+TG++ Sbjct: 5 VSANKLEILQIARAVAQEKMIDESIVLEAIEEAIQKAARSRYGAELDIHCKINPKTGEMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L VVEEVEN QI+L A+ RDP +IG + LPP++FGRVA Q+AKQVI QK Sbjct: 65 LTSRTTVVEEVENEAHQITLDEAKKRDPEAEIGSFYEEELPPIEFGRVASQTAKQVITQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER RQ+ E+KD++GEI++G VKRVEYGNVI+DLG ++G+IRR + I RE+L+ DR Sbjct: 125 VREAERKRQFNEYKDRIGEIVNGIVKRVEYGNVIIDLGKAEGIIRRSDGIPRESLQVNDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y G++++ V+RDPGSRAK+AV Sbjct: 185 VRAYIYDVREETRGPQIFLSRAHPDFMAALFAQEVPEVYEGVIEIPRVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL EKIDI+ W+PD ATF++NAL+PA V KVVL Sbjct: 245 ISNDSSIDPVGACVGMRGSRVQAVVNELAGEKIDIIPWNPDPATFIVNALQPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 D++ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F+ERT Sbjct: 305 DDEAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDILTEEEESERRQKEFSERTST 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE+IA LL EGFA+VE++A V++ EIA IEGFD++TA EIQ RARE+LE Sbjct: 365 FMNALDVDEVIAQLLATEGFAEVEDIAFVELDEIAVIEGFDDDTAQEIQTRAREFLEKRA 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV + + + G+D + V GEN + T+EDLAG + DDL GW E + G Sbjct: 425 AEQDARRKELGVEDAVLDVEGVDLPMAVKFGENEVCTIEDLAGLTPDDLRGWYETRDGER 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 + G L + E +I+ AR GWI +E + Sbjct: 485 VREPGILEGSDMSPEDAEMLIMRARVIAGWISEEDLPQA 523 >gi|260431715|ref|ZP_05785686.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis ITI-1157] gi|260415543|gb|EEX08802.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis ITI-1157] Length = 560 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 279/542 (51%), Positives = 378/542 (69%), Gaps = 23/542 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDP---------------------SIDIGGVV 97 + R+ VV EE+ENY ++++ AR +G V+ Sbjct: 63 TFTRVRTVVDDEELENYQAEMTVDQARAYFEPSKDGRAVWLRDGQPIEDFSTGPQVGDVL 122 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + +PP++ GR+A QSAKQVI+QKVREAERDRQY +FKD+VG II+G VKR E+GNVIVD Sbjct: 123 QEEVPPVEMGRIAAQSAKQVILQKVREAERDRQYEDFKDRVGTIINGAVKREEFGNVIVD 182 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 LG ++ V+RR++ I RE+ RP DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVP Sbjct: 183 LGGAEAVLRRNDKIGRESYRPNDRVRAYIKEVRREPRGHQIFLSRTAPEFMAELFKMEVP 242 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+GI+++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ Sbjct: 243 EIYDGIIEIKAVARDPGSRAKIAVISHDNSIDPVGACVGMRGSRVQAVVNELQGEKIDII 302 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 W+ D TF++NAL+PA V+KVVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG Sbjct: 303 PWNEDQPTFLVNALQPAEVSKVVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGL 362 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI+TE E+S RQK+F RT+ FM ++++DE A LLVAEGF ++EE+A V++ E+ Sbjct: 363 DIDIMTEAEESARRQKEFEARTKLFMDSLDLDEFFAQLLVAEGFTNLEEVAYVELDELLV 422 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 I+G DE TA E+Q RAR+ +E R LG + L G+ ++ AL ++G+K Sbjct: 423 IDGVDEGTAQELQARARDVIEAQAKAALDNARALGAEDSLIEFEGLTPQMVEALAKDGVK 482 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 T+ED A C+ +L G G K DG L G ++ + +++ AR +GW++ ++ Sbjct: 483 TLEDFATCADWELAGGWTTVDGQRVKDDGILEPFGVTLEEAQDLVMTARVMLGWVDPAEL 542 Query: 518 AD 519 Sbjct: 543 EQ 544 >gi|86136807|ref|ZP_01055385.1| transcription elongation factor NusA [Roseobacter sp. MED193] gi|85826131|gb|EAQ46328.1| transcription elongation factor NusA [Roseobacter sp. MED193] Length = 541 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 276/524 (52%), Positives = 377/524 (71%), Gaps = 2/524 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ + +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRSVVEDEALENYQAEMTVEQAKQYMANPAVGDTFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +Q+VREAERDRQ+ EF+D+ G II+ VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQRVREAERDRQFEEFQDRAGTIINALVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+Q+KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIQIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISNDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNDDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D+ TA E+Q RAR++LE Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELTVIDGVDDGTAEELQARARDFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ + AL ++ I T+ED A C+ +L G N Sbjct: 423 AKAKAAIDAARALGAEDSLIQFDGLTPPMVEALAKDEILTLEDFATCADWELAGGWTNDN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 G K DG L G ++ + +++ AR +GW++ + + E Sbjct: 483 GERIKDDGILEPFGMSLEEAQELVMTARVMLGWVDPDDLIGAED 526 >gi|83942070|ref|ZP_00954532.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36] gi|83847890|gb|EAP85765.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36] Length = 542 Score = 655 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 277/527 (52%), Positives = 381/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K +G L + + +I+ AR +GW++ ++ ++V + Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVDPAELEADDVDEE 529 >gi|114571580|ref|YP_758260.1| transcription elongation factor NusA [Maricaulis maris MCS10] gi|114342042|gb|ABI67322.1| NusA antitermination factor [Maricaulis maris MCS10] Length = 572 Score = 655 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 312/518 (60%), Positives = 391/518 (75%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIA AVA EKSID +V+ + ++IQKAARS YG +DIR +I+P+TG++S Sbjct: 5 VSANRLELLQIARAVAAEKSIDESIVIEAIEEAIQKAARSRYGAENDIRAKIDPKTGELS 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVEEVEN + +++L A+ D + +IG V SD LPP++FGRVA Q+AKQVI QK Sbjct: 65 LTRNMTVVEEVENDSQELTLADAKKIDKTAEIGTVFSDELPPIEFGRVASQTAKQVITQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER RQ+ E+KD+VGEIISG VKRVEYGNVI+DLG ++ +IRR + I RENL+ +R Sbjct: 125 VREAERQRQFEEYKDRVGEIISGIVKRVEYGNVIIDLGRAEAIIRRADGIPRENLQNNER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y GI+++ +V+RDPGSRAK+AV Sbjct: 185 VRAYIYDVREEVRGPQIFLSRAHPDFMAALFAQEVPEVYEGIIEIPSVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D SIDPVGACVGMRGSRVQAVV+EL EKIDI+ WS D ATF++NAL+PA V KVVL Sbjct: 245 ISNDGSIDPVGACVGMRGSRVQAVVSELAGEKIDIIPWSDDPATFIVNALQPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW+IDI+TEEE+S RQK+F ERTQ Sbjct: 305 DEEDQRIEVVVPDEQLSLAIGRRGQNVRLASQLTGWSIDILTEEEESERRQKEFAERTQI 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VDE+IA LL EGF DVE+LA + EI +IEGFDE+TA EIQ RAR+YL+ + Sbjct: 365 FIAALDVDEVIAQLLATEGFTDVEDLAYADLGEIGAIEGFDEDTAEEIQARARDYLDRLS 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K +ELGV + + + G+ + V GEN +KT++DLAG DDL GW E K G Sbjct: 425 AEQDAKRKELGVEDAVLEVEGVVLAMAVKFGENDVKTVDDLAGLVTDDLRGWFETKNGER 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 + G L + E MI+ AR GWI +E + Sbjct: 485 VREPGILEEFNLAAEDAEMMIMRARVAAGWISEEDLPQ 522 >gi|126734454|ref|ZP_01750201.1| transcription termination factor NusA, putative [Roseobacter sp. CCS2] gi|126717320|gb|EBA14184.1| transcription termination factor NusA, putative [Roseobacter sp. CCS2] Length = 538 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 279/518 (53%), Positives = 376/518 (72%), Gaps = 2/518 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG + Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVAIDRKTGKAT 63 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 R+ VVEE +ENY + ++ A++ ++G + +PP++ GR+A QSAKQVI+ Sbjct: 64 FTRVRTVVEEEELENYQAEFTVAQAKEYMEDPEVGQQFIEEVPPVELGRIAAQSAKQVIL 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE RP Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGREAYRPN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +I +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK+ Sbjct: 184 DRIRCFIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+KV Sbjct: 244 AVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F RT Sbjct: 304 VLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFELRT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +++DE A LLV+EGF ++EE+A V++ E+ IEG DE+TA E+Q RAR+YLE Sbjct: 364 KLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIEGVDEDTASELQARARDYLEA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + R LGV + L + G+ + ALG++G+KT+ED A C+ +L G G Sbjct: 424 KAKEAMEAARALGVEDSLANFEGLTPAMLEALGQDGVKTLEDFATCADWELAGGWTTVDG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 K DG L ++ + M++ AR +GW++ +++ Sbjct: 484 ERVKDDGVLEPFEVSLEEAQDMVMTARVMLGWVDPDEL 521 >gi|254460407|ref|ZP_05073823.1| transcription termination factor NusA [Rhodobacterales bacterium HTCC2083] gi|206676996|gb|EDZ41483.1| transcription termination factor NusA [Rhodobacteraceae bacterium HTCC2083] Length = 537 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 287/527 (54%), Positives = 381/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVAIDRKTGRA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY + +++ A+ + ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEFTVEQAKQYMENPEVGATFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+ I+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDNIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+A++VDE A LLVAEGF ++EE+A V+I E+ I+G DE+TA E+Q RARE+LE Sbjct: 363 TKLFMEALDVDEFFAQLLVAEGFTNLEEVAYVEIDELLVIDGVDEDTAGELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K RELG + L + GI ++ L E+G+KT+ED A C+ +L G Sbjct: 423 AKAAAALAKARELGADDSLLTFEGITPQMAEVLAEDGVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L G ++ +SMI+ AR +GW++ ++ DA Sbjct: 483 GERVKDDGLLEQFGMELEEAQSMIMTARVLLGWVDPAELEAAHDDDA 529 >gi|209966175|ref|YP_002299090.1| transcription elongation factor NusA [Rhodospirillum centenum SW] gi|209959641|gb|ACJ00278.1| transcription elongation factor NusA [Rhodospirillum centenum SW] Length = 511 Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 291/506 (57%), Positives = 382/506 (75%), Gaps = 16/506 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +ELLQ+ADAVA EK+ID++ VL M ++I+KA RS YG DIR I+ +TG+I L R L Sbjct: 1 MELLQVADAVAREKNIDKEHVLEAMEEAIKKAGRSKYGHEHDIRARIDRKTGEIQLTRYL 60 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VEN QI L A+ ++P+ +G + DPLPP+DFGR+A Q+AKQVI+QKVREAE Sbjct: 61 EVVETVENEALQIDLAKAKRKNPAAKVGDFIVDPLPPIDFGRIAAQTAKQVIVQKVREAE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+RQ+ E+KD++GEI++G VKRVEYGNV VDLG ++GV+RRDE++ RE+ + GDRV++YI Sbjct: 121 RERQFNEYKDRMGEIVNGLVKRVEYGNVTVDLGRAEGVLRRDESLPREHFKTGDRVRAYI 180 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVRREQRGPQ+ LSRTHP FM LF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS Sbjct: 181 YDVRREQRGPQIFLSRTHPMFMAGLFKQEVPEIYDGIIEIKAVARDPGSRAKIAVISKDS 240 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVLDE+ G Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNRDPATFVVNALAPAEVAKVVLDEENG 300 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +IEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S RQ++F R+Q FM+A+ Sbjct: 301 KIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDIMTEKEESDRRQEEFRTRSQLFMEAL 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +VD++IAHLLVAEGF VEE+A V + E+ +I+ FDE+ A E+Q RA+ +LE + L++ Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVDLDELTAIDAFDEDVAAELQNRAQAFLEEQNARLEE 420 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 K R LGV +++ ++ + + V LGENG+KT++DLA + D+L Sbjct: 421 KRRALGVDDDVAAVEALTPAMLVKLGENGVKTLDDLADLAGDELSE-------------- 466 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWI 512 + D ++I+ AR W Sbjct: 467 IVGKDALSVDDANAVIMAARAH--WF 490 >gi|254438705|ref|ZP_05052199.1| NusA N-terminal domain family [Octadecabacter antarcticus 307] gi|198254151|gb|EDY78465.1| NusA N-terminal domain family [Octadecabacter antarcticus 307] Length = 537 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 276/526 (52%), Positives = 376/526 (71%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E +ENY + +++ AR+ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVAEAELENYQAEFTVEQAREYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++++++DE A LLV+EGF +EE+A V + E+ I+G D +TA E+Q RAR+ +E Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVDVDELLVIDGVDADTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + RELGV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 AKNNKAMENARELGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K DG L ++ ++MI+ AR +GW++ + + + D Sbjct: 483 GERTKDDGSLEPFEVSLEEAQTMIMTARVMLGWVDPDDLVKDAEDD 528 >gi|304320433|ref|YP_003854076.1| transcription elongation factor NusA [Parvularcula bermudensis HTCC2503] gi|303299335|gb|ADM08934.1| transcription elongation factor NusA [Parvularcula bermudensis HTCC2503] Length = 525 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 312/510 (61%), Positives = 395/510 (77%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+AN++EL+QIA AVA EK ID +V+ M D++ +AARS YG +++R EI+P TG+ Sbjct: 3 VTANKIELIQIARAVAQEKMIDPSIVIEAMEDALSRAARSRYGAETNVRAEIDPRTGETR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+RL+EVVE VEN ++SLK A+ ++P +IG +SDPLPP+DFGRVA AKQVI QK Sbjct: 63 LWRLMEVVESVENDAVEVSLKAAQKQNPEAEIGDFISDPLPPIDFGRVAALGAKQVINQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD QY E+KD+VGEIISG +KR+EYG+VIVDLG + +IRRD+ I RE LR GDR Sbjct: 123 VRDAERDNQYNEYKDRVGEIISGLIKRIEYGHVIVDLGKGEAIIRRDQQIPREPLRQGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI DVRRE RGPQ+ LSR HPQFM +LF EVPE+Y+G++++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIADVRREPRGPQIFLSRNHPQFMARLFEQEVPEVYDGVIEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+DSSIDPVGACVGMRGSRVQAVV EL EKIDIV WS D+ATFV+NAL PA V KVVL Sbjct: 243 YSNDSSIDPVGACVGMRGSRVQAVVGELGGEKIDIVPWSEDTATFVVNALAPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE++ RIEV+VP EQLSLAIGRRGQNVRLASQLTG+ IDI+TEEE+S RQK++ ER++ Sbjct: 303 DEELERIEVVVPDEQLSLAIGRRGQNVRLASQLTGYEIDIMTEEEESAKRQKEYQERSEI 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VD++IA+LLVAEGFA +EE+A V++ EIA IEGFD+ETA E+Q RA E+LE Sbjct: 363 FMKVLDVDDMIANLLVAEGFARIEEIAYVEVEEIAEIEGFDDETAQELQARALEWLEREQ 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV + L I G+ K VAL E G+ T+ED AGC DDL GW+E G Sbjct: 423 AELDARRRELGVEDALLEIEGMTLKWSVALAEEGVLTVEDFAGCVADDLTGWTERVDGEK 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 + ++G L D E MI AR ++GW Sbjct: 483 KHYEGMLEKFRVKPDLAEQMIAEARRQVGW 512 >gi|254418431|ref|ZP_05032155.1| NusA N-terminal domain family [Brevundimonas sp. BAL3] gi|196184608|gb|EDX79584.1| NusA N-terminal domain family [Brevundimonas sp. BAL3] Length = 587 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 296/533 (55%), Positives = 388/533 (72%), Gaps = 9/533 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+I+R+VV+ + ++IQK A+S YG DIR +I+ +TG+++ Sbjct: 6 ISANRLELLQIAEAVAREKNIEREVVIEAIEEAIQKGAKSRYGAHHDIRAKIDHKTGELA 65 Query: 62 LFRLLEVVEEVENYTCQIS---------LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +VE+ ++ LK A RDP +G + LPP +FGRV Q Sbjct: 66 LTRHVTIVEDDWQPEDELEEFNDSAMVRLKDALKRDPEAVVGKEYVETLPPFEFGRVQTQ 125 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +GV+RRD++I Sbjct: 126 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGVMRRDQSIP 185 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDR+++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL Sbjct: 246 SGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+KVVLDE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 306 PAEVSKVVLDEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F+ERT F +A++VDE+IA LLV EGFA +E+LA V E++ IEGFDEETA E+Q R Sbjct: 366 REFSERTGLFQEALDVDEVIAQLLVTEGFATIEDLAYVDPYEVSEIEGFDEETAEELQAR 425 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 AR++L+ L K ELGV + + +PG+ + VALGE G+KT+EDLA + D++ G Sbjct: 426 ARDFLDRKAAELDAKRVELGVEDGVLQVPGVTLAMAVALGEGGVKTVEDLADLATDEIRG 485 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 E K G K G L S ++ E +I+ AR GWI+ ++ ++A Sbjct: 486 GYEVKNGERVKVPGVLESFNLAQEDAEMLILQARVAAGWIDASELPQPAPEEA 538 >gi|255262084|ref|ZP_05341426.1| transcription elongation factor NusA [Thalassiobium sp. R2A62] gi|255104419|gb|EET47093.1| transcription elongation factor NusA [Thalassiobium sp. R2A62] Length = 538 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 282/523 (53%), Positives = 374/523 (71%), Gaps = 2/523 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVEE +ENY + +++ A+ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEEEELENYQAEFTVEQAKQYMEDPEVGQAFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKDK G II+ VKR EYGNVIVD+G+ + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDKAGTIINALVKREEYGNVIVDVGSGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM KLF MEVPEIY+ I+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTAPEFMAKLFEMEVPEIYDNIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEEDS RQ +F R Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEDSKRRQAEFETR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR++LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVEELLVIDGVDEGTAGELQARARDFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV L G+ ++ AL E+G+KT+ED A C+ +L G + Sbjct: 423 AQNKKALENARALGVENSLVEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTQD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 G K DG L ++ + M++ AR +GW++ + Sbjct: 483 GERIKDDGVLEKFEISLEEAQDMVMTARIMLGWVDPADLETAS 525 >gi|254510431|ref|ZP_05122498.1| transcription termination factor NusA [Rhodobacteraceae bacterium KLH11] gi|221534142|gb|EEE37130.1| transcription termination factor NusA [Rhodobacteraceae bacterium KLH11] Length = 537 Score = 645 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 280/521 (53%), Positives = 378/521 (72%), Gaps = 2/521 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E+ENY +++++ A+ + ++G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQAKQYMEAPEVGQVFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR E+GNVIVDLG ++ V+RR++ I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGAVKREEFGNVIVDLGGAEAVLRRNDKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK Sbjct: 183 NDRVRAYIKEVRREVRGHQIFLSRTAPEFMAELFKMEVPEIYDGIIEVKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TE E+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEAEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RARE+LE Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQAKAALDAARALGVEDSLIEFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G K DG L G ++ + +++ AR +GW++ ++ Sbjct: 483 GERIKDDGVLEPFGVTLEEAQDLVMTARIMLGWVDPAELEQ 523 >gi|114769758|ref|ZP_01447368.1| transcription elongation factor NusA [alpha proteobacterium HTCC2255] gi|114549463|gb|EAU52345.1| transcription elongation factor NusA [alpha proteobacterium HTCC2255] Length = 542 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 294/519 (56%), Positives = 386/519 (74%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++ Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L S + + MI+ AR ++GW+ +E++ Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVTEEQL 521 >gi|161170254|gb|ABX59224.1| transcription elongation factor [uncultured marine bacterium EB000_55B11] gi|297183783|gb|ADI19906.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 542 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 293/515 (56%), Positives = 382/515 (74%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++ Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L S + + MI+ AR ++GW+ Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVT 517 >gi|329847354|ref|ZP_08262382.1| transcription elongation protein nusA [Asticcacaulis biprosthecum C19] gi|328842417|gb|EGF91986.1| transcription elongation protein nusA [Asticcacaulis biprosthecum C19] Length = 564 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 303/513 (59%), Positives = 384/513 (74%), Gaps = 2/513 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELLQIADAVA EK ID+ VV++ + ++IQKAARS YG DIRV I+P+ G+++ Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVIASIEEAIQKAARSRYGADHDIRVHIDPKWGEMT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + R + VV EEVEN Q SL A D +G + LPP + GRV Q A+QV+ Sbjct: 66 ITRHVTVVGDEEVENEYAQKSLSDALREDKEAFVGKEYVETLPPFELGRVQTQMARQVVT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+RQY EFKD+VGEI++GTV+RVEYGNVIVDLG +G++RRD++I RE + Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVRRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPEIY+G++++K+V+RDPGSRAK+ Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKM 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA VTKV Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDEATFIVNALAPAEVTKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ R+EV+VP EQLSLAIGRRGQNVRL SQLTGW +DIITE +DS RQK+F ERT Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLGSQLTGWQVDIITESQDSERRQKEFAERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A++VDE+IA LLV EGF VE+LA V +EIA+IEGFDE+TA E+Q RAR++LE Sbjct: 366 ALFQEALDVDEVIAQLLVTEGFTSVEDLAYVDENEIAAIEGFDEDTAQELQARARDFLER 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 K +ELGV + + + G+ + VALGE G+KT+EDLA + D+L G E KGG Sbjct: 426 ETAEQDAKRKELGVEDGVLEVQGVTLPMAVALGEAGVKTVEDLADLATDELRGGFEQKGG 485 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L S ES+I++AR GWI Sbjct: 486 ERVRVPGALESFTLSVPDAESLILNARVTAGWI 518 >gi|197106902|ref|YP_002132279.1| N utilization substance protein A [Phenylobacterium zucineum HLK1] gi|196480322|gb|ACG79850.1| N utilization substance protein A [Phenylobacterium zucineum HLK1] Length = 561 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 307/550 (55%), Positives = 394/550 (71%), Gaps = 28/550 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+ID+++V+ + ++IQK AR+ YG DIRV I+P+TG+ + Sbjct: 6 ISANRLELLQIAEAVAREKAIDKEIVIEAIEEAIQKGARARYGAEHDIRVHIDPKTGETT 65 Query: 62 LFRLLEVVEE-----------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104 + R++ VV + +E I L A+ RD ++G V + LPP Sbjct: 66 IKRVVTVVADDATFGGGVDPETGEELPIEEPPGIIRLAEAKRRDKDAEVGKVYEELLPPF 125 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 +FGRV Q A+QV++ KVR+AER+RQY E+KD+VGEI++GTVKRVEYGNV+VDLG +G+ Sbjct: 126 EFGRVQTQMARQVVMGKVRDAERERQYEEYKDRVGEIVNGTVKRVEYGNVVVDLGRGEGI 185 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +RRD++I REN GDR++ YIYDVRRE +GPQ+LLSR H FM KLF EVPE+Y+G++ Sbjct: 186 MRRDQSIPRENFNIGDRIRCYIYDVRRETKGPQILLSRAHGGFMAKLFAQEVPEVYDGVI 245 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +++AV+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A Sbjct: 246 EIRAVARDPGSRAKMAVVSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSQDDA 305 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 TF++NAL PA V+KVV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE Sbjct: 306 TFIVNALAPAEVSKVVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTE 365 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++S RQ++F ERT F +A++VDE+IA LLV EGFA VE++ V SEI++IEGFDE+ Sbjct: 366 SQESERRQREFTERTALFQEALDVDEVIAQLLVTEGFATVEDVGYVDPSEISAIEGFDED 425 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464 TA EIQ RAREYLE K RELGV + L I GI + VALGE GIKT+EDLAG Sbjct: 426 TAEEIQTRAREYLEKEAAEYDAKRRELGVEDGLLDIEGITLPMAVALGEGGIKTVEDLAG 485 Query: 465 CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI-----------E 513 DDL GW E K G + G L + G E +I+ AR MGW+ Sbjct: 486 LVPDDLRGWFETKNGERVREPGILETFGLDAQDAELLIMRARIVMGWVEAPEEPEAEEPT 545 Query: 514 KEKVADEEVQ 523 E A+ E+ Sbjct: 546 DEDFAEAEMA 555 >gi|302381338|ref|YP_003817161.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302191966|gb|ADK99537.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 640 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 296/521 (56%), Positives = 382/521 (73%), Gaps = 9/521 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+IDR++V+ + ++IQK A+S YG DIR I+P+TG+++ Sbjct: 6 ISANRLELLQIANAVAQEKNIDREIVIEALEEAIQKGAKSRYGAHHDIRARIDPKTGELA 65 Query: 62 LFRLLEVVEEVENYTCQIS---------LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +VE+ ++ L A RDP +G + LPP +FGRV Q Sbjct: 66 LTRHVTIVEDDWMPEDELEEFNDSAMVRLTDASKRDPEAVVGKEYVEDLPPFEFGRVQTQ 125 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QVI KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I Sbjct: 126 MARQVITGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 185 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDR+++YIYDVR E +GPQ++LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQIMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL Sbjct: 246 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 306 PAEVSKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F+ERT F +A++VDE+IA LLV EGFA VE+LA V E+A IEGFDE+TA E+Q R Sbjct: 366 REFSERTTLFQEALDVDEVIAQLLVTEGFATVEDLAFVDNYEVAEIEGFDEDTAEELQAR 425 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 AR++LE L K ELGV + + ++PG+ I VALGE G+KT+EDLA + D++ G Sbjct: 426 ARDFLERQAAILDAKRVELGVEDGVMAVPGVTGAIAVALGEGGVKTVEDLADLATDEIRG 485 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 E K G K G L S ++ E +I+ AR GWI+ Sbjct: 486 GYEMKNGERVKVPGVLESFNLAQEDAELLILQARVAAGWID 526 >gi|254452567|ref|ZP_05066004.1| transcription termination factor NusA [Octadecabacter antarcticus 238] gi|198266973|gb|EDY91243.1| transcription termination factor NusA [Octadecabacter antarcticus 238] Length = 538 Score = 640 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 274/522 (52%), Positives = 374/522 (71%), Gaps = 2/522 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E +ENY + +++ A++ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVAEAELENYQSEFTVEQAKEYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++++++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ +E Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVEVEELLVIDGVDADTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 AKNNKAMENARALGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G K DG L ++ + MI+ AR +GW++ + + + Sbjct: 483 GERTKDDGSLEPFEVSLEEAQKMIMTARVMLGWVDPDDLVKD 524 >gi|297717896|gb|ADI50091.1| transcription termination protein NusA [Candidatus Odyssella thessalonicensis L13] Length = 513 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 276/517 (53%), Positives = 377/517 (72%), Gaps = 16/517 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S R E+L +A+AVA EK I+RD VL M +IQKAAR+ YG D+R +++ TGD++ Sbjct: 13 ISQPRHEILAVAEAVAREKGIERDEVLYAMEQAIQKAARAKYGFEKDVRAKVDKHTGDVN 72 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++++L VVEEVE+ QISL A D S ++G + +PLPP++FGRVA QSA+QVIIQK Sbjct: 73 IWKVLTVVEEVEDPLVQISLTDAHQIDKSYNVGDELVEPLPPIEFGRVAAQSARQVIIQK 132 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER QY EFKD+ +IISG VKRVE+GNVIVDLG ++G++RR++ I RE R GDR Sbjct: 133 VRDAERAHQYAEFKDRANQIISGVVKRVEFGNVIVDLGRAEGILRREDLIQREVFRSGDR 192 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ DVR + RGP V LSRTHPQFM +LF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 193 VRAYVSDVRPDARGPMVSLSRTHPQFMARLFESEVPEIYDGVIEIKSVARDPGSRAKIAV 252 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +++D SIDPVG+CVG+RG RVQAVVTEL+ EKIDIV WS + ATFV+NAL PA V KVVL Sbjct: 253 YTADPSIDPVGSCVGLRGVRVQAVVTELQGEKIDIVPWSSNPATFVVNALAPAEVIKVVL 312 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ R++++V ++QLSLAIGRRGQNVRLASQLTGW IDI+TEE+++ R +++N RTQ Sbjct: 313 DEEAHRVDMVVAEDQLSLAIGRRGQNVRLASQLTGWNIDIMTEEQEAKLRTEEYNTRTQL 372 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE+IA LL A+GF VEEL+ + E+ +IEGFDE A EIQ RA ++E Sbjct: 373 FMNALDVDEVIAQLLAADGFTTVEELSFAPLEELTAIEGFDEAIAQEIQSRALSFVEQRA 432 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 +K ++LGVSEE+ I G+ +++ + L E+ IK+++D A S D+ L ++ Sbjct: 433 KASLEKAKDLGVSEEILEIDGMTAEMLLKLAEHNIKSLDDFADLSGDEFLEIAQEDQ--- 489 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +Q +MI+ AR W ++E A Sbjct: 490 -----------LTLEQANAMIMAARAH--WFDEEPKA 513 >gi|315497224|ref|YP_004086028.1| nusa antitermination factor [Asticcacaulis excentricus CB 48] gi|315415236|gb|ADU11877.1| NusA antitermination factor [Asticcacaulis excentricus CB 48] Length = 546 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 300/513 (58%), Positives = 385/513 (75%), Gaps = 2/513 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELLQIADAVA EK ID+ VVL+ + +++QKAARS YG DIRV ++P TG+++ Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVLASIEEAVQKAARSRYGADHDIRVRVDPRTGEMT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + R + VV EE+EN Q L A D +G + LPP + GRV Q A+QV+ Sbjct: 66 ITRYVTVVPDEELENEYAQRGLTEALREDKDAFVGKTYDEVLPPFELGRVQSQMARQVVT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+RQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G++RRD++I RE + Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G++++K+V+RDPGSRAK+ Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIKSVARDPGSRAKM 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V+KV Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIQWSPDEATFIVNALAPAEVSKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW +DIITE +DS RQK+F ERT Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQVDIITESQDSERRQKEFAERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A++ DE+IA LLV EGF+ VE+LA V EIA+IEGFDE+TA E+Q RAR+YLE Sbjct: 366 ALFQEALDADEVIAQLLVTEGFSTVEDLAYVDQMEIAAIEGFDEDTAAELQARARDYLER 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + K ELGV +E+ ++PGI + VALGE G+KT+EDLA + D++ G E +G Sbjct: 426 FEAEQNAKRVELGVEDEVLNVPGITLAMAVALGEAGVKTVEDLADLATDEVRGGFEQRGA 485 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L S E++I++AR GWI Sbjct: 486 EKVRVPGALESFSLSVADAEALILNARIAAGWI 518 >gi|329891253|ref|ZP_08269596.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC 11568] gi|328846554|gb|EGF96118.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC 11568] Length = 576 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 295/529 (55%), Positives = 381/529 (72%), Gaps = 9/529 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELL IADAVA EK+IDR++V+ + ++IQK A+S YG DIR +I+ +TG++S Sbjct: 4 ISANRLELLSIADAVAREKNIDREIVIEAIEEAIQKGAKSRYGAHHDIRAQIDHKTGELS 63 Query: 62 LFRLLEVVEEVENYTCQIS---------LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +V + ++ L+ A RD ++G + LPP +FGRV Q Sbjct: 64 LTRHVTIVADDWQPEDELEEFNDSAMVRLRDALKRDAEAEVGKEYVEVLPPFEFGRVQTQ 123 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I Sbjct: 124 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 183 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDRV++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 184 REVFNVGDRVRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 243 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL Sbjct: 244 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNEDEPTFIVNALA 303 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 304 PAEVAKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F ERT F +A++VDE IA LLV EGFA VE+LA V+ EI+ IEGFDE+TA E+Q R Sbjct: 364 REFAERTALFQEALDVDETIAQLLVTEGFATVEDLAFVEAYEISEIEGFDEDTAEELQTR 423 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 ARE+LE L K LGV + + +PG+ + I VALGE G+KT+EDLA + D++ G Sbjct: 424 AREHLERQAAELDAKRVALGVEDGVLDVPGVTAAIAVALGEGGVKTVEDLADLATDEIRG 483 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 E +GG K G L S ++ E +I+ AR GWI+ ++ E Sbjct: 484 GYEVRGGERVKVPGVLESFNLSQEDAEMLILQARVAAGWIDASELPQPE 532 >gi|144897846|emb|CAM74710.1| transcription elongation protein [Magnetospirillum gryphiswaldense MSR-1] Length = 503 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 282/516 (54%), Positives = 368/516 (71%), Gaps = 17/516 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63 Query: 61 SLFRLLEVVEEVENY-TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L R +EVVEE Q+ L A ++P G + DPLPP+DFGR+A Q+AKQVI+ Sbjct: 64 QLARYIEVVEEEVENEATQLPLARALKKNPGAKAGDFLVDPLPPIDFGRIAAQTAKQVIV 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R G Sbjct: 124 QKVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTG 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++YI DVR+E RGPQ+ LSRT P FM KLF EVPEIY+GI+++KAV+RDPGSRAK+ Sbjct: 184 DRVRAYIADVRQEPRGPQIFLSRTSPIFMSKLFAQEVPEIYDGIIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + ATFV+NAL PA V+KV Sbjct: 244 AVISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSGEYATFVVNALAPAEVSKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLD++ +EV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE E+S R ++F R+ Sbjct: 304 VLDDETHTMEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDIMTEAEESERRNEEFRSRS 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F+ A++VD++IAHLLV EGF VEE+A V + +++ IEGFDE+ A E+Q RAR +L Sbjct: 364 KLFIDALDVDDVIAHLLVTEGFTTVEEVAYVPLEDLSGIEGFDEDVAAELQQRARTFLAE 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 D ++LGVS+E+ ++ G+ + V LG IKT++DL + D+L+ Sbjct: 424 QDERYDAMRKDLGVSDEMAALEGLSPAMLVKLGHREIKTLDDLGDLASDELID------- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + +DQ ++I+ AR W + E Sbjct: 477 -------IVGKDEMNEDQANAVIMAARAH--WFDGE 503 >gi|89052531|ref|YP_507982.1| transcription elongation factor NusA [Jannaschia sp. CCS1] gi|88862080|gb|ABD52957.1| NusA antitermination factor [Jannaschia sp. CCS1] Length = 590 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 286/566 (50%), Positives = 382/566 (67%), Gaps = 53/566 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVA------------------RDRDPSID-------- 92 + R+ V +E +EN ++ L A D + Sbjct: 63 TFTRVRTVADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRDVR 122 Query: 93 -------------------------IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 IG +++D +PP++ GR+A QSAKQVI+QKVREAER Sbjct: 123 RFVMRKPTENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREAER 182 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DRQ+ EFKD+VGEII+G VKR EYGNVIVD+G+ + +RR+E I RE R GDR++ YI Sbjct: 183 DRQFAEFKDRVGEIINGVVKREEYGNVIVDVGSGEAQLRRNEKIGREAYRNGDRIRCYIK 242 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK+AV S D+ Sbjct: 243 DVRRENRGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNG 302 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVVLDED G+ Sbjct: 303 IDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGK 362 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F ERT+ FM ++ Sbjct: 363 IEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLD 422 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +DE A LLV+EGF +EE+A V+ E+ I+G DE TA E+Q RAR+YLE + +K Sbjct: 423 LDEFFAQLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLALEK 482 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 +E+GV E L + G+ ++ VALGE+G+KT+ED A C+ +L G +GG K DG Sbjct: 483 AKEMGVEESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDDGL 542 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIE 513 L ++ ++M++ AR ++GW+ Sbjct: 543 LEPFEVSLEEAQNMVMTARLQLGWVT 568 >gi|288959698|ref|YP_003450039.1| N utilization substance protein A [Azospirillum sp. B510] gi|288912006|dbj|BAI73495.1| N utilization substance protein A [Azospirillum sp. B510] Length = 510 Score = 630 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 290/519 (55%), Positives = 374/519 (72%), Gaps = 16/519 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +ELLQ+ADAVA EK+IDRD VL M +IQKA RS YG DIR I+ +TGDI L R L Sbjct: 1 MELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHL 60 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VEN Q++L A+ R +G + DPLPP+DFGR+A Q+AKQVI+QKVR+AE Sbjct: 61 EVVETVENEATQVTLPYAQRRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R RQ+ E+KD+ GEI++G VKRVEYGNV VDLG ++ ++RRDE + RE+ + GDRV++YI Sbjct: 121 RKRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLGRAEAILRRDELLPREHFKNGDRVRAYI 180 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +DVR E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS Sbjct: 181 FDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHDS 240 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ TFV+NAL PA V KVVLD+D Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVVLDDDNH 300 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 RIEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R ++ + R+ FMQA+ Sbjct: 301 RIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSALFMQAL 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +VD++IAHLLVAEGF VEE+A V+ E+A IEGFDE A E++ RA +L+ D Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVETEELAEIEGFDESVADELKQRALAFLDVQDEQANL 420 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + ELGV + + + G ++ V LGENG+KT++DLA + D+L+ Sbjct: 421 RRLELGVEDIVAELTGFNATQLVKLGENGVKTLDDLADLAGDELVE-------------- 466 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 L G +++ ++I+ AR W E E+ A Sbjct: 467 ILGKDGPSEEEANAIIMAARAH--WFEGEEQGATAEGSA 503 >gi|16124300|ref|NP_418864.1| transcription elongation factor NusA [Caulobacter crescentus CB15] gi|221232982|ref|YP_002515418.1| transcription elongation factor NusA [Caulobacter crescentus NA1000] gi|13421138|gb|AAK22032.1| N utilization substance protein A [Caulobacter crescentus CB15] gi|220962154|gb|ACL93510.1| N utilization substance protein A [Caulobacter crescentus NA1000] Length = 548 Score = 630 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 300/514 (58%), Positives = 393/514 (76%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ + Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64 Query: 62 LFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV E+E ++ +A+ +IG V + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAER 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIASIEGFDEETA E+Q RARE+LE Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAREFLE 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + LGV +EL +I G+ + VALGE +K++EDLAG DD+ GW ENKG Sbjct: 425 KEAAELDAKRKALGVEDELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDMRGWFENKG 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L S + E++I+ AR MGW+ Sbjct: 485 GERVREPGILESFNLSPEDAEALIMRARIAMGWV 518 >gi|23016102|ref|ZP_00055862.1| COG0195: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 502 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 296/514 (57%), Positives = 375/514 (72%), Gaps = 16/514 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+Q Sbjct: 64 QLARYIEVVEEVENEATQQTLKQVLKKKPDAQVGDFLVDPLPPIDFGRIAAQTAKQVIVQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GD Sbjct: 124 KVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++YIYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+A Sbjct: 184 RVRAYIYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVV Sbjct: 244 VQSHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+ Sbjct: 304 LDEEAGRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L Sbjct: 364 MFIQALDVDDVIAHLLVTEGFSSVEEVAYVPSEDIADIEGFDENVAEELQTRARNFLAEQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+LL Sbjct: 424 DERYDQMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELLD-------- 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 L +D+ ++I+ AR W E+ Sbjct: 476 ------ILGKDAMSEDEANAVIMAARAH--WFEE 501 >gi|241761099|ref|ZP_04759188.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374718|gb|EER64179.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 538 Score = 627 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 281/528 (53%), Positives = 386/528 (73%), Gaps = 7/528 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+ Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGASVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+ Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++ Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE + Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476 +++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+ Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + + DG L+ G ++Q +I+ AR W + + +D Sbjct: 485 HSSDNNEEDGILAEYGLSQEQGNEIIMAARAH--WFDDAEDETHSSED 530 >gi|114799070|ref|YP_758846.1| transcription termination factor NusA [Hyphomonas neptunium ATCC 15444] gi|114739244|gb|ABI77369.1| transcription termination factor NusA [Hyphomonas neptunium ATCC 15444] Length = 592 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 289/528 (54%), Positives = 378/528 (71%), Gaps = 3/528 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIA AVA EKSID+ +V+ M ++I+KAA++ YG DIR +I+P TG+ + Sbjct: 6 VSANRLEILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQT 65 Query: 62 LFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L+R+ VV++ E+ Q+ L A+ D ++ G + + LPP DFGRVA Q+AKQVI Sbjct: 66 LWRIQTVVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVIT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVR+AER+RQY E+KD+VGEI+SG VKRVEYG+VIVDLG ++G+IRR++ I REN +P Sbjct: 126 QKVRDAERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGRAEGIIRRNDGIPRENFQPN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+Y V RE +GPQ+ LSR P FM KLF EVPE+Y G++Q+KA +RDPGSRAK+ Sbjct: 186 DRVRAYLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKI 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 V S+DSSIDPVGACVGMRG+RVQAVV EL EKIDI+ WS D+ATF++N L+PA V+KV Sbjct: 246 GVISNDSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDED R+EV+V +Q LAIGRRGQNVRLASQLTGW ID+ITE DS QK+F ERT Sbjct: 306 VLDEDERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 FM+A++ DE +A LL +EGF VEE+A V + +IEGFD++ A E+Q RAREYL+ Sbjct: 366 DLFMKALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDR 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN-KG 478 + K RELGV++E+ + G+ V LGE G+KT+ED+AG DD+ G+ E Sbjct: 426 VATENDAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDITGYREPGPD 485 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 G +G L KD ++ AR GWIE E + + Q S Sbjct: 486 GKPVWVEGILKKGEMRKDDANLFVMKARVAAGWIEPEAIEEMLAQQQS 533 >gi|83313172|ref|YP_423436.1| transcription elongation factor NusA [Magnetospirillum magneticum AMB-1] gi|82948013|dbj|BAE52877.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 503 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 295/514 (57%), Positives = 375/514 (72%), Gaps = 16/514 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+Q Sbjct: 64 QLARYIEVVEEVENEATQQTLKQVLKKKPDAVVGDFLVDPLPPIDFGRIAAQTAKQVIVQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GD Sbjct: 124 KVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++YIYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+A Sbjct: 184 RVRAYIYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVV Sbjct: 244 VLSHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+ Sbjct: 304 LDEEAGRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L Sbjct: 364 MFIQALDVDDVIAHLLVTEGFSSVEEVAYVPAEDIADIEGFDENVAEELQTRARNFLAEQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+L+ Sbjct: 424 DERYDQMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELID-------- 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 L +D+ ++I+ AR W E+ Sbjct: 476 ------ILGKDAMTEDEANAVIMAARAH--WFEE 501 >gi|260752935|ref|YP_003225828.1| transcription elongation factor NusA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856277|ref|YP_162291.2| transcription elongation factor NusA [Zymomonas mobilis subsp. mobilis ZM4] gi|258552298|gb|ACV75244.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775273|gb|AAV89180.2| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 538 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 281/528 (53%), Positives = 386/528 (73%), Gaps = 7/528 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+ Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGAAVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+ Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++ Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE + Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476 +++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+ Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + + DG L+ G ++Q +I+ AR W + + +D Sbjct: 485 HSSDNNEEDGILAEYGLSQEQGNEIIMAARAH--WFDDAEDETHSSED 530 >gi|254295403|ref|YP_003061426.1| NusA antitermination factor [Hirschia baltica ATCC 49814] gi|254043934|gb|ACT60729.1| NusA antitermination factor [Hirschia baltica ATCC 49814] Length = 572 Score = 626 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 287/511 (56%), Positives = 381/511 (74%), Gaps = 1/511 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LE+L IA+ +A EK ID+ +VL MA++IQKAARS YG DI V I+P++G+ + Sbjct: 6 VSANKLEILAIANILAAEKQIDKMIVLEAMAEAIQKAARSRYGQEHDIHVHIDPKSGETT 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + R+ VVEEVE+ +SL+ AR+ DP+ +IG + LPP +FGRVA Q+AKQVI K Sbjct: 66 ITRVQTVVEEVEDPAHHLSLEEAREIDPNAEIGTEFKEILPPFEFGRVAAQTAKQVITGK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKDK G+II+G VKRVE+GN+IVDLG +G+IRR++ + RENL PGDR Sbjct: 126 VRDAERDRQYEEFKDKEGQIINGIVKRVEHGNIIVDLGRGEGIIRRNDGLPRENLNPGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ +Y V RE +GPQ+ LSR HP FMV LF EVPE+Y G++++KA SRDPGSRAK+ V Sbjct: 186 VRAILYKVSREPKGPQLFLSRAHPTFMVALFSQEVPEVYEGVIEIKACSRDPGSRAKIGV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+S+DPVGACVGMRG+RVQAVV+EL+ EKIDI+ WS D ATF++NAL+PA V+KVV+ Sbjct: 246 LSHDASVDPVGACVGMRGARVQAVVSELQGEKIDIIPWSEDEATFIVNALQPAEVSKVVV 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED R+EV+V + Q LAIGRRGQNVRLASQLTGW ID+ TE +DS RQK+F ER+ Sbjct: 306 DEDEERVEVVVEESQFPLAIGRRGQNVRLASQLTGWQIDLTTEAQDSERRQKEFQERSGL 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++ DE++A LL +EGF ++EE+A V + + ASI+GFDE A E+Q RAREYLE + Sbjct: 366 FMRALDADEMLAQLLASEGFENIEEIAYVDLEDFASIDGFDEAVASELQTRAREYLELLA 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG-GN 480 + KK ++LGV++E+ + G+ + V G++GIKT++DLAG DDL+GW E G Sbjct: 426 AAMDKKRKDLGVTDEVAFMDGVTPVMAVRFGDDGIKTIDDLAGLVPDDLIGWKEPDAKGK 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 G L+ +D E I+ AR GW Sbjct: 486 SRWQPGLLAKGEMTRDAAELFILRARVLAGW 516 >gi|163796764|ref|ZP_02190722.1| Transcription elongation factor [alpha proteobacterium BAL199] gi|159178018|gb|EDP62565.1| Transcription elongation factor [alpha proteobacterium BAL199] Length = 517 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 283/516 (54%), Positives = 375/516 (72%), Gaps = 16/516 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + +LEL+Q+AD VA +K IDR+ VL M +IQKA RS YG DIR I+ TG+I Sbjct: 3 IATQPKLELIQVADVVARDKGIDREEVLIAMEQAIQKAGRSKYGPDHDIRATIDRRTGEI 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SL R VVEE+E+ QI+L A+ DP+++IG V+S+PLPP+DFGR+A Q+AKQVI+Q Sbjct: 63 SLKRCTTVVEEIEDEISQITLAQAQKIDPALEIGSVISEPLPPIDFGRIAAQTAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVRE ER RQY E+KD+ GEII+G+VKRVEYGNV V++ ++ ++RRD + RE R GD Sbjct: 123 KVREFERQRQYEEYKDRSGEIINGSVKRVEYGNVTVEIQRAEAILRRDRLLPRETFRQGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++YI DVR E RGPQ+ LSRTHP+FM +LF EVPE+Y+GI+++KAV+RDPGSRAK+A Sbjct: 183 RIRAYIEDVRSEPRGPQIFLSRTHPEFMRQLFRQEVPEVYDGIIEIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL PA V+KVV Sbjct: 243 VISYDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSDDPATFVVNALAPAEVSKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L ED GRIEV+VP EQLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R+++F R+ Sbjct: 303 LHEDAGRIEVVVPDEQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESDRRKEEFRVRSD 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+++D++IA LLVAEGF VEE+A V + ++A IEGFD + A E+Q RA ++E Sbjct: 363 TFITALDIDDVIAGLLVAEGFTSVEEIADVDLEDLAEIEGFDVDIAGELQMRALNHVEAE 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + L+ ELGV++E+ ++ + + VALGE G+KT++D A + D+LL Sbjct: 423 RVRLEALRTELGVTDEVAALEALSPAMLVALGEKGVKTLDDFADLASDELLE-------- 474 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 L + +D +I+ AR W + E Sbjct: 475 ------ILPADSMDEDTANDLIMAARAH--WFDDED 502 >gi|167644004|ref|YP_001681667.1| transcription elongation factor NusA [Caulobacter sp. K31] gi|167346434|gb|ABZ69169.1| NusA antitermination factor [Caulobacter sp. K31] Length = 568 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 294/514 (57%), Positives = 384/514 (74%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+ +TG+ + Sbjct: 5 ISANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDTKTGETT 64 Query: 62 LFRLLEVVEEVENYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV + +I L A+ ++G + + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVPDDFELEGEIGKVQLSSAKRTWRDAEVGKIYEESLPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+ GEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRAGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQK F E Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQKQFTET 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFD+ETA E+Q RARE+L+ Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFATVEDVAYVEPHEIAAIEGFDDETADELQTRAREFLD 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K ELGV + L I G+ + VALGE +K++EDLAG DDL GW E K Sbjct: 425 KEAAALDAKRVELGVEDGLLEIEGVTLPVAVALGEGDVKSVEDLAGLIPDDLRGWFETKD 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L S + E++I+ AR MGW+ Sbjct: 485 GERTREAGILDSFNLSPEDAEALIMRARVVMGWV 518 >gi|58040013|ref|YP_191977.1| transcription elongation factor NusA [Gluconobacter oxydans 621H] gi|58002427|gb|AAW61321.1| N utilization substance protein A NusA [Gluconobacter oxydans 621H] Length = 517 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 281/523 (53%), Positives = 372/523 (71%), Gaps = 16/523 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S R ELL +ADAV+ EK+IDR+ VL M +IQKA R+ YG DIR I+ +TG++ Sbjct: 3 TSVTRPELLLVADAVSREKNIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEHVENEDTQIPLHIARKFQPEIQAGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLMVEIGHTEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDAAIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRSSQ 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+ IEGFDE A E+ RA +YL + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHTIEELAYTDPGELNDIEGFDESVAEELMHRANDYLASKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + + LGV++++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 423 QALDDQRKALGVTDDVAELGTFTNQMLVTLGEKGVKTLDDLADLAGDELVE--------- 473 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 L +D +I+ AR W + E+ + ++ Sbjct: 474 -----ILGEEAIDEDAANEIIMAARAH--WFDGEEADSAKPEN 509 >gi|295687485|ref|YP_003591178.1| transcription termination factor NusA [Caulobacter segnis ATCC 21756] gi|295429388|gb|ADG08560.1| transcription termination factor NusA [Caulobacter segnis ATCC 21756] Length = 560 Score = 624 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 298/514 (57%), Positives = 394/514 (76%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ + Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64 Query: 62 LFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV E+E ++ L +A+ +IG V + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPLSIAKRAWRDAEIGKVYEEALPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFTER 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFDEETA E+Q RARE+LE Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIAAIEGFDEETAEELQARAREFLE 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + LGV +E+ +I G+ + VALGE +KT+EDLAG DD+ GW E+K Sbjct: 425 KEAAELDAKRKALGVEDEVLAIEGVTLAMAVALGEGDVKTVEDLAGLVPDDMRGWFESKN 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L + + E++I+ AR MGW+ Sbjct: 485 GERVREPGILETFNLSPEDAEALIMRARVAMGWV 518 >gi|87200505|ref|YP_497762.1| transcription elongation factor NusA [Novosphingobium aromaticivorans DSM 12444] gi|87136186|gb|ABD26928.1| NusA antitermination factor [Novosphingobium aromaticivorans DSM 12444] Length = 544 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 290/540 (53%), Positives = 387/540 (71%), Gaps = 17/540 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD+ Sbjct: 5 ISANRAELLAIANAVATEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEVVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERDRQYDEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R+ RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILKVERQNRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++ Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGF ++EE+A ++++E+A+IEGFDEE A E+Q RA E +E + Sbjct: 365 FEEELDVDETLSQLLVAEGFTELEEVAYIEMAELAAIEGFDEELAEELQSRASEAIERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW-------- 473 L+++ R LGV + L +P + + VALG+ GIKT++DLA + D+L+ Sbjct: 425 EALREQRRALGVDDALAELPHLTEAMLVALGKAGIKTLDDLADLATDELIAKKRAEQRRR 484 Query: 474 -------SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 + E G L G ++Q +I+ AR W E E VA+E S Sbjct: 485 NDKGPRERTERSERTEDKGGVLGEFGLSEEQGNEIIMAARAH--WFEDEPVAEEAADADS 542 >gi|148259243|ref|YP_001233370.1| transcription elongation factor NusA [Acidiphilium cryptum JF-5] gi|326402396|ref|YP_004282477.1| transcription elongation protein NusA [Acidiphilium multivorum AIU301] gi|146400924|gb|ABQ29451.1| NusA antitermination factor [Acidiphilium cryptum JF-5] gi|325049257|dbj|BAJ79595.1| transcription elongation protein NusA [Acidiphilium multivorum AIU301] Length = 506 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 294/513 (57%), Positives = 374/513 (72%), Gaps = 16/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELL +ADAVA EK IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ L R Sbjct: 9 RPELLLVADAVAREKQIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVRLSRW 68 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+VRE Sbjct: 69 TEAVETVENEETQIPIHIARKFKPDIEVGGHLVDPLPPIDFGRIAAQTAKQVIVQRVREY 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER RQY E+KD+VGEII+G VKR EYGN++VDLG S+ ++RRDETI RENL GDRV+++ Sbjct: 129 ERKRQYDEYKDRVGEIITGVVKRTEYGNLMVDLGRSEALLRRDETIPRENLHNGDRVRAF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY GI+++KAV+RDPGSRAK+AV S D Sbjct: 189 IYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYEGIIEIKAVARDPGSRAKMAVISRD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP+ ATFV+NAL PA V+KVVLDE+ Sbjct: 249 SSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPNPATFVVNALAPAEVSKVVLDEEA 308 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G++EV+VP QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ F++A Sbjct: 309 GKVEVVVPDTQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGLFVEA 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD++IA LLV EGF VE+LA + E+A+IEGFDE A E+Q RA LE L+ Sbjct: 369 LDVDDVIAGLLVTEGFEGVEDLAATPVEELAAIEGFDEGIAAELQRRAEVALERKATELE 428 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 K R LGV+++L + G+ + VALGE G+KT++DLA + D+L+ Sbjct: 429 DKRRALGVADDLAGLEGLSPAMLVALGEKGVKTLDDLADLASDELIE------------- 475 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + + +D ++I+ AR W E E+ A Sbjct: 476 -IVGADAMDEDAANAIIMAARAH--WFEGEEDA 505 >gi|149185835|ref|ZP_01864150.1| transcription elongation factor NusA [Erythrobacter sp. SD-21] gi|148830396|gb|EDL48832.1| transcription elongation factor NusA [Erythrobacter sp. SD-21] Length = 554 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 284/534 (53%), Positives = 386/534 (72%), Gaps = 19/534 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKAAQKLEADARIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EF+D+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFNEFQDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALITKVERNNRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDGATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S RQK+F ER++ Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKRQKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V++ E+ASIEGFDEE A E+Q RA+E L+ + Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVELEELASIEGFDEELAEELQSRAQEALDRQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 ++ +ELGV + L +P + + V LG+ G+KT++D+A + D+L+ Sbjct: 425 AAHREVRQELGVDDALAELPHMTEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 473 --------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++ + G L G ++Q +I+ AR W E E A Sbjct: 485 NNNPDGPPMRRDRPMREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEDEA 536 >gi|103486103|ref|YP_615664.1| transcription elongation factor NusA [Sphingopyxis alaskensis RB2256] gi|98976180|gb|ABF52331.1| NusA antitermination factor [Sphingopyxis alaskensis RB2256] Length = 548 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 284/532 (53%), Positives = 382/532 (71%), Gaps = 9/532 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ + ++IQ+AAR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAIEEAIQRAARARYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ L + IG + DPLP +D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVETVEDYFKQVDLAAGQKLQKDARIGDFIVDPLPAVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREA+R+RQY EFKD+ GEII+G VK VE+G+++V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VREADRERQYQEFKDRAGEIITGVVKSVEFGHIVVNLGRAEGVIRRDQQIPRELMRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I VR E RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILSVRSETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISYDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVQRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQ++F ER+ Sbjct: 305 DEDDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKQIDIMTEADASEKRQREFVERSTM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE +A LLVAEGF+++EE+A V + E+ASIEGFDEE A E+Q RA E LE + Sbjct: 365 FQEELDVDETLAQLLVAEGFSELEEVAYVPLDELASIEGFDEELAQELQSRAAEGLERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN----- 476 + + RELGV + L IP + + V LG+ GI+T++DLA + D+L+ Sbjct: 425 EAARAERRELGVEDALADIPHLTEAMLVTLGKAGIRTLDDLADLATDELIAKKRTDNRRG 484 Query: 477 --KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 + E G L G ++Q +I+ AR W + E+ ++ A+ Sbjct: 485 PARSERAEDKGGVLGEYGLSEEQGNEIIMAARAH--WFDDEESSEPATAPAA 534 >gi|332188268|ref|ZP_08389995.1| transcription termination factor NusA [Sphingomonas sp. S17] gi|332011664|gb|EGI53742.1| transcription termination factor NusA [Sphingomonas sp. S17] Length = 538 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 283/531 (53%), Positives = 382/531 (71%), Gaps = 9/531 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ EL+ IA+AVA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P +GD+ Sbjct: 5 ISANKAELIAIANAVASEKMIDKGIVIEAMEDAIQRAARARYGAENDIRAKLDPNSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE+V++Y QI LK A IG + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVEQVDDYYKQIDLKGAEKLQKGAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKD+ GEII+G VKRVE+G+++VDLG ++GVIRRD+ I RE +R DR Sbjct: 125 VRDAERDRQYDEFKDRQGEIITGVVKRVEFGHIVVDLGRAEGVIRRDQQIPREVVRVNDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 IRSLILNVRRENRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+ Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE + S RQK+F ++ Sbjct: 305 DEEEDRIEVVVPDDQLSLAIGRRGQNVRLASQLTAKAIDILTEADASEKRQKEFVANSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V++ E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELAAIEGFDEDLAQELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + R LGV + L +P + + V LG+ GIKT++DLA + D+L+ ++ Sbjct: 425 QAARDERRALGVEDALAEMPYLTEAMLVTLGKAGIKTLDDLADLATDELVEKKRSEPRRR 484 Query: 482 EKF-------DGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G L+ G +Q +I+ AR W E E +A Sbjct: 485 GDDAPRAAPKGGILAEYGLSDEQGNEIIMAARAH--WFTDEDEPVAEAGEA 533 >gi|85373514|ref|YP_457576.1| transcription elongation factor NusA [Erythrobacter litoralis HTCC2594] gi|84786597|gb|ABC62779.1| N-utilization substance protein A [Erythrobacter litoralis HTCC2594] Length = 557 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 286/531 (53%), Positives = 386/531 (72%), Gaps = 18/531 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANAVASEKMIDKAIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKSAQKLEEGAAIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFEEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRAIITKVERNNRGPQIFLSRAHPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDQATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F ER++ Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V + E+A+IEGFDEE A E+Q RA+E LE Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVAMEELAAIEGFDEELAEELQSRAQEALERQA 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 +K+ RELGV ++L +P + ++ V LG++GIKT++DLA + D+L+ Sbjct: 425 EAYRKERRELGVEDDLAELPHLSEQMLVTLGKSGIKTLDDLADLATDELIQKKREAPRRR 484 Query: 473 -------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ + G L G ++Q +I+ AR W E E+ Sbjct: 485 NTAEGPRMRSDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEE 533 >gi|258543556|ref|YP_003188989.1| transcription elongation factor NusA [Acetobacter pasteurianus IFO 3283-01] gi|329113267|ref|ZP_08242050.1| Transcription elongation protein NusA [Acetobacter pomorum DM001] gi|256634634|dbj|BAI00610.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-01] gi|256637690|dbj|BAI03659.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-03] gi|256640744|dbj|BAI06706.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-07] gi|256643799|dbj|BAI09754.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-22] gi|256646854|dbj|BAI12802.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-26] gi|256649907|dbj|BAI15848.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-32] gi|256652897|dbj|BAI18831.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655951|dbj|BAI21878.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-12] gi|326697408|gb|EGE49066.1| Transcription elongation protein NusA [Acetobacter pomorum DM001] Length = 514 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 284/523 (54%), Positives = 371/523 (70%), Gaps = 16/523 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAV+ EK I+R+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVSREKGIEREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R EVV+EVEN QI+L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEVVDEVENEDTQIALSIARKFRPEIQAGEYLIDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE R DR Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLLVEIGSAEALLRRDELIPRETFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F RT Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+ IEGFDE E+ RA YL + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADPDELIGIEGFDESVVQELVQRAESYLVQQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + +ELGV +++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 423 QKLDDRRKELGVVDDIADMGVFTNQMLVTLGEKGVKTLDDLADLAGDELVE--------- 473 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 L + +D +I+ AR W E E + ++ Sbjct: 474 -----ILGTDAIEEDAANEIIMAARAH--WFEDENQQPSDTKE 509 >gi|123440812|ref|YP_001004803.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160078|ref|YP_004296655.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087773|emb|CAL10559.1| N utilization substance protein A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607362|emb|CBY28860.1| transcription termination protein NusA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664308|gb|ADZ40952.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862029|emb|CBX72196.1| transcription elongation protein nusA [Yersinia enterocolitica W22703] Length = 495 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 317/510 (62%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVINREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238761767|ref|ZP_04622741.1| Transcription termination factor NusA [Yersinia kristensenii ATCC 33638] gi|238699881|gb|EEP92624.1| Transcription termination factor NusA [Yersinia kristensenii ATCC 33638] Length = 495 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 202/510 (39%), Positives = 316/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DPSI +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLDAAQYEDPSIQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGHNAEAVINREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|293393154|ref|ZP_06637469.1| N utilization substance A [Serratia odorifera DSM 4582] gi|291424300|gb|EFE97514.1| N utilization substance A [Serratia odorifera DSM 4582] Length = 495 Score = 614 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 204/510 (40%), Positives = 313/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPSI++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEDPSIELGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGGNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G Q +I+ AR + W Sbjct: 472 -------GLSDQQAGELIMAAR-NICWFGD 493 >gi|296285012|ref|ZP_06863010.1| transcription elongation factor NusA [Citromicrobium bathyomarinum JL354] Length = 557 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 282/536 (52%), Positives = 381/536 (71%), Gaps = 20/536 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANRAELLAIANSVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGAAVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ L+R HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALISKVERNNRGPQIFLTRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS + ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEEEATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F R++ Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAARSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V++ E+A IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVQLDELAMIEGFDEELAEELQSRATEALERQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 ++ RELGV + L +P + + V LG+ G+KT++D+A + D+L+ Sbjct: 425 AAHREARRELGVEDALADLPHLSEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 473 ---------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 ++ + G L G ++Q +I+ AR W E E+ A Sbjct: 485 NNANADGPPMRRDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEEPAK 538 >gi|326388032|ref|ZP_08209636.1| transcription elongation factor NusA [Novosphingobium nitrogenifigens DSM 19370] gi|326207533|gb|EGD58346.1| transcription elongation factor NusA [Novosphingobium nitrogenifigens DSM 19370] Length = 551 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 281/526 (53%), Positives = 377/526 (71%), Gaps = 15/526 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P +GD+ Sbjct: 5 ISANRAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEHVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM +LF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILRVERTNRGPQIFLSRAHPDFMKRLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++ Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFTERSKT 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGF+++EE+ + I+E+A+IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFSELEEVGYIDIAELATIEGFDEELATELQNRALEALERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 +++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 EGQRQERRALGVEDALADLPHLTEAMLVTLGKAGIKTLDDLADLATDELIARKRGGEQRR 484 Query: 473 ----WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 ++ E G L G ++Q +I+ AR W + Sbjct: 485 RGGNDRRDRSERSEDKGGVLGEYGLNEEQGNEIIMAARAH--WFDD 528 >gi|238750125|ref|ZP_04611628.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380] gi|238711669|gb|EEQ03884.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380] Length = 495 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 317/510 (62%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITIEAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPVKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238793021|ref|ZP_04636650.1| Transcription termination factor NusA [Yersinia intermedia ATCC 29909] gi|238727621|gb|EEQ19146.1| Transcription termination factor NusA [Yersinia intermedia ATCC 29909] Length = 495 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 314/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRQYLGEIVTGVVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238787593|ref|ZP_04631391.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC 33641] gi|238724380|gb|EEQ16022.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC 33641] Length = 495 Score = 612 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTMPTREITIDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|85710531|ref|ZP_01041595.1| transcription elongation factor NusA [Erythrobacter sp. NAP1] gi|85687709|gb|EAQ27714.1| transcription elongation factor NusA [Erythrobacter sp. NAP1] Length = 547 Score = 612 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 281/527 (53%), Positives = 379/527 (71%), Gaps = 16/527 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD++ Sbjct: 5 ISANKAELLAIANSVASEKMIDKTIVIEAMEEAIQKSARNRYGAENDIRAKLDPNTGDLT 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGASVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFEEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR P FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALITKVERNNRGPQIFLSRAAPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVARVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S R K+F ER++ Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGHQIDIMTEEEASEKRSKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA +EE+A V+++E+A+IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFAMLEEVAYVEMAELAAIEGFDEELAEELQSRAIEALERQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN----- 476 + RELGV + + +P ++ + V LG+ G+KT++D+A + D+L+ Sbjct: 425 EAHRTARRELGVEDAIAELPHLNEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 477 ---------KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + + G L G ++Q +I+ AR W E Sbjct: 485 NNTDGPPMRRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFED 529 >gi|238783516|ref|ZP_04627538.1| Transcription termination factor NusA [Yersinia bercovieri ATCC 43970] gi|238797553|ref|ZP_04641050.1| Transcription termination factor NusA [Yersinia mollaretii ATCC 43969] gi|238715571|gb|EEQ07561.1| Transcription termination factor NusA [Yersinia bercovieri ATCC 43970] gi|238718550|gb|EEQ10369.1| Transcription termination factor NusA [Yersinia mollaretii ATCC 43969] Length = 495 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|51594831|ref|YP_069022.1| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 32953] gi|108806045|ref|YP_649961.1| transcription elongation factor NusA [Yersinia pestis Antiqua] gi|108813401|ref|YP_649168.1| transcription elongation factor NusA [Yersinia pestis Nepal516] gi|145600793|ref|YP_001164869.1| transcription elongation factor NusA [Yersinia pestis Pestoides F] gi|153947426|ref|YP_001402551.1| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 31758] gi|153997274|ref|ZP_02022374.1| N utilization substance protein A [Yersinia pestis CA88-4125] gi|162418514|ref|YP_001608285.1| transcription elongation factor NusA [Yersinia pestis Angola] gi|165925730|ref|ZP_02221562.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. F1991016] gi|165936779|ref|ZP_02225346.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. IP275] gi|166010132|ref|ZP_02231030.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214620|ref|ZP_02240655.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401309|ref|ZP_02306809.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420758|ref|ZP_02312511.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423617|ref|ZP_02315370.1| transcription termination factor NusA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025946|ref|YP_001722451.1| transcription elongation factor NusA [Yersinia pseudotuberculosis YPIII] gi|186893840|ref|YP_001870952.1| transcription elongation factor NusA [Yersinia pseudotuberculosis PB1/+] gi|218930511|ref|YP_002348386.1| transcription elongation factor NusA [Yersinia pestis CO92] gi|229839149|ref|ZP_04459308.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896638|ref|ZP_04511805.1| transcription termination/antitermination L factor [Yersinia pestis Pestoides A] gi|229899713|ref|ZP_04514854.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903875|ref|ZP_04518988.1| transcription termination/antitermination L factor [Yersinia pestis Nepal516] gi|270489135|ref|ZP_06206209.1| transcription termination factor NusA [Yersinia pestis KIM D27] gi|294505370|ref|YP_003569432.1| transcription elongation factor NusA [Yersinia pestis Z176003] gi|51588113|emb|CAH19719.1| N utilization substance protein A [Yersinia pseudotuberculosis IP 32953] gi|108777049|gb|ABG19568.1| N utilization substance protein A [Yersinia pestis Nepal516] gi|108777958|gb|ABG12016.1| N utilization substance protein A [Yersinia pestis Antiqua] gi|115349122|emb|CAL22085.1| N utilization substance protein A [Yersinia pestis CO92] gi|145212489|gb|ABP41896.1| N utilization substance protein A [Yersinia pestis Pestoides F] gi|149288911|gb|EDM38991.1| N utilization substance protein A [Yersinia pestis CA88-4125] gi|152958921|gb|ABS46382.1| transcription termination factor NusA [Yersinia pseudotuberculosis IP 31758] gi|162351329|gb|ABX85277.1| transcription termination factor NusA [Yersinia pestis Angola] gi|165915428|gb|EDR34038.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. IP275] gi|165922342|gb|EDR39519.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991039|gb|EDR43340.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204195|gb|EDR48675.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961564|gb|EDR57585.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049334|gb|EDR60742.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057787|gb|EDR67533.1| transcription termination factor NusA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752480|gb|ACA69998.1| NusA antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186696866|gb|ACC87495.1| NusA antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229679645|gb|EEO75748.1| transcription termination/antitermination L factor [Yersinia pestis Nepal516] gi|229687205|gb|EEO79280.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. India 195] gi|229695515|gb|EEO85562.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700416|gb|EEO88448.1| transcription termination/antitermination L factor [Yersinia pestis Pestoides A] gi|262363436|gb|ACY60157.1| transcription elongation factor NusA [Yersinia pestis D106004] gi|262367189|gb|ACY63746.1| transcription elongation factor NusA [Yersinia pestis D182038] gi|270337639|gb|EFA48416.1| transcription termination factor NusA [Yersinia pestis KIM D27] gi|294355829|gb|ADE66170.1| transcription elongation factor NusA [Yersinia pestis Z176003] gi|320013700|gb|ADV97271.1| transcription termination/antitermination L factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 313/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +G+I++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|269137762|ref|YP_003294462.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267983422|gb|ACY83251.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304557819|gb|ADM40483.1| Transcription termination protein NusA [Edwardsiella tarda FL6-60] Length = 495 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 316/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ SI+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATLLVEEGFSTLEELAYVPERELLSIDGLDEETVEALRTRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W + Sbjct: 472 -------GLNNEQAGELIMAAR-NICWFGDSE 495 >gi|238755155|ref|ZP_04616501.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473] gi|238706602|gb|EEP98973.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473] Length = 495 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 314/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPS +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLEAAQFEDPSTQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRSEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + + Sbjct: 362 HLDIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL E Sbjct: 422 EESLGDQKPADDLLNLEGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W Sbjct: 473 --------LSDEQAGELIMAAR-NICWFGD 493 >gi|22124601|ref|NP_668024.1| transcription elongation factor NusA [Yersinia pestis KIM 10] gi|45440440|ref|NP_991979.1| transcription elongation factor NusA [Yersinia pestis biovar Microtus str. 91001] gi|21957405|gb|AAM84275.1|AE013671_2 transcription pausing L factor [Yersinia pestis KIM 10] gi|45435297|gb|AAS60856.1| N utilization substance protein A [Yersinia pestis biovar Microtus str. 91001] Length = 501 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 313/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 8 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 68 WVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +G+I++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 128 ERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRG 187 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 188 VLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 247 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 248 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 307 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 308 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 367 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 368 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 427 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 428 EESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 477 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 478 -------GLSDEQAGELIMAAR-NICWFGD 499 >gi|238918423|ref|YP_002931937.1| transcription elongation factor NusA [Edwardsiella ictaluri 93-146] gi|238867991|gb|ACR67702.1| transcription elongation factor NusA, putative [Edwardsiella ictaluri 93-146] Length = 495 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 316/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ SI+G DE+T ++ RA+ L + + Sbjct: 362 HLDIDEEFATLLVEEGFSSLEELAYVPERELLSIDGLDEDTVEVLRTRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W + Sbjct: 472 -------GLNNEQAGELIMAAR-NICWFGDSE 495 >gi|238760242|ref|ZP_04621387.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236] gi|238701565|gb|EEP94137.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236] Length = 495 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 313/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE A LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLAIDEDFATTLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL E Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W Sbjct: 473 --------LSDEQAGELIMAAR-NICWFGD 493 >gi|152972093|ref|YP_001337239.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896676|ref|YP_002921421.1| transcription elongation factor NusA [Klebsiella pneumoniae NTUH-K2044] gi|262042727|ref|ZP_06015881.1| N utilization substance A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997774|ref|ZP_08302913.1| transcription termination factor NusA [Klebsiella sp. MS 92-3] gi|150956942|gb|ABR78972.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549003|dbj|BAH65354.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039952|gb|EEW41069.1| N utilization substance A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538908|gb|EGF64969.1| transcription termination factor NusA [Klebsiella sp. MS 92-3] Length = 495 Score = 609 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARFEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GMTDEKAGELIMAAR-NICWFGDE 494 >gi|206577127|ref|YP_002236420.1| transcription termination factor NusA [Klebsiella pneumoniae 342] gi|288933403|ref|YP_003437462.1| NusA antitermination factor [Klebsiella variicola At-22] gi|290511546|ref|ZP_06550915.1| N utilization substance protein A [Klebsiella sp. 1_1_55] gi|206566185|gb|ACI07961.1| transcription termination factor NusA [Klebsiella pneumoniae 342] gi|288888132|gb|ADC56450.1| NusA antitermination factor [Klebsiella variicola At-22] gi|289776539|gb|EFD84538.1| N utilization substance protein A [Klebsiella sp. 1_1_55] Length = 495 Score = 609 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARYEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GMTDEKAGELIMAAR-NICWFGDE 494 >gi|294634514|ref|ZP_06713049.1| L factor [Edwardsiella tarda ATCC 23685] gi|291092028|gb|EFE24589.1| L factor [Edwardsiella tarda ATCC 23685] Length = 495 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 202/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR DP+ D+G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTQPTREITLEAARFEDPAFDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ +I+G DEE+ ++ RA+ L + + Sbjct: 362 HLDIDEEFATLLVEEGFSTLEELAYVPERELLAIDGLDEESVEALRTRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G D +I+ AR + W + Sbjct: 472 -------GLNHDSAGELIMAAR-NICWFGDSE 495 >gi|170765858|ref|ZP_02900669.1| transcription termination/antitermination factor NusA [Escherichia albertii TW07627] gi|170125004|gb|EDS93935.1| transcription termination/antitermination factor NusA [Escherichia albertii TW07627] Length = 495 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGMDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|156935695|ref|YP_001439611.1| transcription elongation factor NusA [Cronobacter sakazakii ATCC BAA-894] gi|156533949|gb|ABU78775.1| hypothetical protein ESA_03562 [Cronobacter sakazakii ATCC BAA-894] Length = 495 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTREITLEAARYEDPSLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T++DLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NIRWFSDE 494 >gi|317493625|ref|ZP_07952046.1| transcription termination factor NusA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918568|gb|EFV39906.1| transcription termination factor NusA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVDEVTQPTREITLDAAQFEDPALQLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHQGEIVTGVVKKVSRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ +I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATLLVEEGFSTLEELAYVPEQELLAIDGLDEDTVDALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G+D I + G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPAEDLLALEGLDRGIAFKMAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +I+ AR + W + Sbjct: 472 -------GLNSEKAGELIMAAR-NICWFGDSE 495 >gi|218550454|ref|YP_002384245.1| transcription elongation factor NusA [Escherichia fergusonii ATCC 35469] gi|218357995|emb|CAQ90641.1| transcription termination/antitermination L factor [Escherichia fergusonii ATCC 35469] gi|323966351|gb|EGB61785.1| transcription termination protein NusA [Escherichia coli M863] gi|324115225|gb|EGC09189.1| transcription termination protein NusA [Escherichia fergusonii B253] gi|325498752|gb|EGC96611.1| transcription elongation factor NusA [Escherichia fergusonii ECD227] gi|327255185|gb|EGE66785.1| transcription elongation protein nusA [Escherichia coli STEC_7v] Length = 495 Score = 607 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|114329058|ref|YP_746215.1| transcription elongation factor NusA [Granulibacter bethesdensis CGDNIH1] gi|114317232|gb|ABI63292.1| n utilization substance protein A [Granulibacter bethesdensis CGDNIH1] Length = 512 Score = 607 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 291/515 (56%), Positives = 370/515 (71%), Gaps = 16/515 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 8 TAISRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 67 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 68 LSRWTEAVEVVENEETQIPIHIARKFKPDIELGGHLVDPLPPIDFGRIAAQTAKQVIVQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEII+G VKR EYGN++VDLG S+ ++RRDE I+RE+ R GDR Sbjct: 128 VREYERRRQYDEFKDRVGEIINGVVKRTEYGNLMVDLGKSEALLRRDELIARESFRNGDR 187 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV Sbjct: 188 VRAYIYDVREEPRGPQIFLSRTHPNFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 247 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+ Sbjct: 248 ISRDQSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 307 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT Sbjct: 308 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTSL 367 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VD++IA LLV EGF VEELA + E++ IEGFDE A E+ RA L Sbjct: 368 FVDALDVDDVIAGLLVTEGFTTVEELAFSPVEELSEIEGFDENVAEELIRRAEVDLTRRA 427 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K + LGV++E+ I + + VALGE G+KT++DLA + D+L+ Sbjct: 428 NEMDDKRKALGVTDEIADIETLTPAMLVALGEKGVKTLDDLADLAGDELVE--------- 478 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + S ++ +I+ AR W E+ Sbjct: 479 -----IVGSDAMDEETANEIIMAARAH--WFTDEE 506 >gi|170680571|ref|YP_001745443.1| transcription elongation factor NusA [Escherichia coli SMS-3-5] gi|191168053|ref|ZP_03029853.1| transcription termination/antitermination factor NusA [Escherichia coli B7A] gi|193067419|ref|ZP_03048387.1| transcription termination/antitermination factor NusA [Escherichia coli E110019] gi|209920646|ref|YP_002294730.1| transcription elongation factor NusA [Escherichia coli SE11] gi|218701940|ref|YP_002409569.1| transcription elongation factor NusA [Escherichia coli IAI39] gi|218706791|ref|YP_002414310.1| transcription elongation factor NusA [Escherichia coli UMN026] gi|260857298|ref|YP_003231189.1| transcription termination/antitermination L factor NusA [Escherichia coli O26:H11 str. 11368] gi|260869921|ref|YP_003236323.1| transcription termination/antitermination L factor NusA [Escherichia coli O111:H- str. 11128] gi|293406780|ref|ZP_06650706.1| nusA [Escherichia coli FVEC1412] gi|293412544|ref|ZP_06655267.1| nusA [Escherichia coli B354] gi|298382521|ref|ZP_06992118.1| N utilization substance protein A [Escherichia coli FVEC1302] gi|300897933|ref|ZP_07116312.1| transcription termination factor NusA [Escherichia coli MS 198-1] gi|300938079|ref|ZP_07152857.1| transcription termination factor NusA [Escherichia coli MS 21-1] gi|301022024|ref|ZP_07185967.1| transcription termination factor NusA [Escherichia coli MS 69-1] gi|309793747|ref|ZP_07688173.1| transcription termination factor NusA [Escherichia coli MS 145-7] gi|331664783|ref|ZP_08365688.1| L factor [Escherichia coli TA143] gi|170518289|gb|ACB16467.1| transcription termination/antitermination factor NusA [Escherichia coli SMS-3-5] gi|190901922|gb|EDV61671.1| transcription termination/antitermination factor NusA [Escherichia coli B7A] gi|192959376|gb|EDV89811.1| transcription termination/antitermination factor NusA [Escherichia coli E110019] gi|209913905|dbj|BAG78979.1| N utilization substance protein A [Escherichia coli SE11] gi|218371926|emb|CAR19782.1| transcription termination/antitermination L factor [Escherichia coli IAI39] gi|218433888|emb|CAR14805.1| transcription termination/antitermination L factor [Escherichia coli UMN026] gi|257755947|dbj|BAI27449.1| transcription termination/antitermination L factor NusA [Escherichia coli O26:H11 str. 11368] gi|257766277|dbj|BAI37772.1| transcription termination/antitermination L factor NusA [Escherichia coli O111:H- str. 11128] gi|284923193|emb|CBG36287.1| transcription elongation protein [Escherichia coli 042] gi|291426786|gb|EFE99818.1| nusA [Escherichia coli FVEC1412] gi|291469315|gb|EFF11806.1| nusA [Escherichia coli B354] gi|298277661|gb|EFI19177.1| N utilization substance protein A [Escherichia coli FVEC1302] gi|300358363|gb|EFJ74233.1| transcription termination factor NusA [Escherichia coli MS 198-1] gi|300397739|gb|EFJ81277.1| transcription termination factor NusA [Escherichia coli MS 69-1] gi|300456939|gb|EFK20432.1| transcription termination factor NusA [Escherichia coli MS 21-1] gi|308122704|gb|EFO59966.1| transcription termination factor NusA [Escherichia coli MS 145-7] gi|323154383|gb|EFZ40584.1| transcription elongation protein nusA [Escherichia coli EPECa14] gi|323178882|gb|EFZ64458.1| transcription elongation protein nusA [Escherichia coli 1180] gi|323183124|gb|EFZ68522.1| transcription elongation protein nusA [Escherichia coli 1357] gi|324008768|gb|EGB77987.1| transcription termination factor NusA [Escherichia coli MS 57-2] gi|324018307|gb|EGB87526.1| transcription termination factor NusA [Escherichia coli MS 117-3] gi|331058031|gb|EGI30013.1| L factor [Escherichia coli TA143] Length = 495 Score = 607 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|15803711|ref|NP_289745.1| transcription elongation factor NusA [Escherichia coli O157:H7 EDL933] gi|15833304|ref|NP_312077.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. Sakai] gi|16131061|ref|NP_417638.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. MG1655] gi|24114460|ref|NP_708970.1| transcription elongation factor NusA [Shigella flexneri 2a str. 301] gi|26249753|ref|NP_755793.1| transcription elongation factor NusA [Escherichia coli CFT073] gi|30064509|ref|NP_838680.1| transcription elongation factor NusA [Shigella flexneri 2a str. 2457T] gi|74313706|ref|YP_312125.1| transcription elongation factor NusA [Shigella sonnei Ss046] gi|89109934|ref|AP_003714.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. W3110] gi|91212591|ref|YP_542577.1| transcription elongation factor NusA [Escherichia coli UTI89] gi|117625465|ref|YP_858788.1| transcription elongation factor NusA [Escherichia coli APEC O1] gi|157155683|ref|YP_001464646.1| transcription elongation factor NusA [Escherichia coli E24377A] gi|157162654|ref|YP_001459972.1| transcription elongation factor NusA [Escherichia coli HS] gi|168762136|ref|ZP_02787143.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4501] gi|168786054|ref|ZP_02811061.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC869] gi|168797770|ref|ZP_02822777.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC508] gi|170018579|ref|YP_001723533.1| transcription elongation factor NusA [Escherichia coli ATCC 8739] gi|170082706|ref|YP_001732026.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. DH10B] gi|188492867|ref|ZP_03000137.1| transcription termination/antitermination factor NusA [Escherichia coli 53638] gi|191172236|ref|ZP_03033779.1| transcription termination/antitermination factor NusA [Escherichia coli F11] gi|193062170|ref|ZP_03043266.1| transcription termination/antitermination factor NusA [Escherichia coli E22] gi|194433789|ref|ZP_03066064.1| transcription termination/antitermination factor NusA [Shigella dysenteriae 1012] gi|215488487|ref|YP_002330918.1| transcription elongation factor NusA [Escherichia coli O127:H6 str. E2348/69] gi|217326723|ref|ZP_03442806.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. TW14588] gi|218555741|ref|YP_002388654.1| transcription elongation factor NusA [Escherichia coli IAI1] gi|218560241|ref|YP_002393154.1| transcription elongation factor NusA [Escherichia coli S88] gi|218691461|ref|YP_002399673.1| transcription elongation factor NusA [Escherichia coli ED1a] gi|218696876|ref|YP_002404543.1| transcription elongation factor NusA [Escherichia coli 55989] gi|227887892|ref|ZP_04005697.1| N utilization substance A [Escherichia coli 83972] gi|237706078|ref|ZP_04536559.1| transcription termination/antitermination factor NusA [Escherichia sp. 3_2_53FAA] gi|238902273|ref|YP_002928069.1| transcription termination/antitermination L factor [Escherichia coli BW2952] gi|253771995|ref|YP_003034826.1| transcription elongation factor NusA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038335|ref|ZP_04872393.1| transcription termination/antitermination factor NusA [Escherichia sp. 1_1_43] gi|254163113|ref|YP_003046221.1| transcription elongation factor NusA [Escherichia coli B str. REL606] gi|256018911|ref|ZP_05432776.1| transcription elongation factor NusA [Shigella sp. D9] gi|256024255|ref|ZP_05438120.1| transcription elongation factor NusA [Escherichia sp. 4_1_40B] gi|260845984|ref|YP_003223762.1| transcription termination/antitermination L factor NusA [Escherichia coli O103:H2 str. 12009] gi|261228181|ref|ZP_05942462.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. FRIK2000] gi|261255037|ref|ZP_05947570.1| transcription termination/antitermination L factor NusA [Escherichia coli O157:H7 str. FRIK966] gi|291284545|ref|YP_003501363.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str. CB9615] gi|293416602|ref|ZP_06659241.1| transcription elongation protein nusA [Escherichia coli B185] gi|293449505|ref|ZP_06663926.1| transcription elongation protein nusA [Escherichia coli B088] gi|300817579|ref|ZP_07097795.1| transcription termination factor NusA [Escherichia coli MS 107-1] gi|300823868|ref|ZP_07103992.1| transcription termination factor NusA [Escherichia coli MS 119-7] gi|300904355|ref|ZP_07122208.1| transcription termination factor NusA [Escherichia coli MS 84-1] gi|300918924|ref|ZP_07135483.1| transcription termination factor NusA [Escherichia coli MS 115-1] gi|300926092|ref|ZP_07141910.1| transcription termination factor NusA [Escherichia coli MS 182-1] gi|300929859|ref|ZP_07145305.1| transcription termination factor NusA [Escherichia coli MS 187-1] gi|300948819|ref|ZP_07162887.1| transcription termination factor NusA [Escherichia coli MS 116-1] gi|300955755|ref|ZP_07168100.1| transcription termination factor NusA [Escherichia coli MS 175-1] gi|300977836|ref|ZP_07174076.1| transcription termination factor NusA [Escherichia coli MS 200-1] gi|300990769|ref|ZP_07179341.1| transcription termination factor NusA [Escherichia coli MS 45-1] gi|301025986|ref|ZP_07189468.1| transcription termination factor NusA [Escherichia coli MS 196-1] gi|301047988|ref|ZP_07195030.1| transcription termination factor NusA [Escherichia coli MS 185-1] gi|301301775|ref|ZP_07207909.1| transcription termination factor NusA [Escherichia coli MS 124-1] gi|301326408|ref|ZP_07219762.1| transcription termination factor NusA [Escherichia coli MS 78-1] gi|301644880|ref|ZP_07244852.1| transcription termination factor NusA [Escherichia coli MS 146-1] gi|306816487|ref|ZP_07450619.1| transcription elongation factor NusA [Escherichia coli NC101] gi|307139856|ref|ZP_07499212.1| transcription elongation factor NusA [Escherichia coli H736] gi|307313124|ref|ZP_07592750.1| transcription termination factor NusA [Escherichia coli W] gi|312968492|ref|ZP_07782701.1| transcription elongation protein nusA [Escherichia coli 2362-75] gi|331643869|ref|ZP_08345000.1| L factor [Escherichia coli H736] gi|331648970|ref|ZP_08350058.1| L factor [Escherichia coli M605] gi|331654775|ref|ZP_08355775.1| L factor [Escherichia coli M718] gi|331659458|ref|ZP_08360400.1| L factor [Escherichia coli TA206] gi|331669998|ref|ZP_08370843.1| L factor [Escherichia coli TA271] gi|331674707|ref|ZP_08375466.1| L factor [Escherichia coli TA280] gi|331679250|ref|ZP_08379922.1| L factor [Escherichia coli H591] gi|331684818|ref|ZP_08385410.1| L factor [Escherichia coli H299] gi|332280000|ref|ZP_08392413.1| transcription pausing [Shigella sp. D9] gi|84028773|sp|P0AFF8|NUSA_ECO57 RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028774|sp|P0AFF7|NUSA_ECOL6 RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028775|sp|P0AFF6|NUSA_ECOLI RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028776|sp|P0AFF9|NUSA_SHIFL RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|12517780|gb|AAG58305.1|AE005545_7 transcription pausing; L factor [Escherichia coli O157:H7 str. EDL933] gi|26110181|gb|AAN82367.1|AE016767_127 N utilization substance protein A [Escherichia coli CFT073] gi|606109|gb|AAA57972.1| L factor [Escherichia coli str. K-12 substr. MG1655] gi|1789560|gb|AAC76203.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. MG1655] gi|13363523|dbj|BAB37473.1| transcription termination-antitermination factor NusA [Escherichia coli O157:H7 str. Sakai] gi|24053641|gb|AAN44677.1| transcription pausing; L factor [Shigella flexneri 2a str. 301] gi|30042768|gb|AAP18491.1| transcription pausing; L factor [Shigella flexneri 2a str. 2457T] gi|73857183|gb|AAZ89890.1| transcription pausing; L factor [Shigella sonnei Ss046] gi|85675965|dbj|BAE77215.1| transcription termination/antitermination L factor [Escherichia coli str. K12 substr. W3110] gi|91074165|gb|ABE09046.1| transcription pausing; L factor [Escherichia coli UTI89] gi|115514589|gb|ABJ02664.1| transcription elongation factor NusA [Escherichia coli APEC O1] gi|157068334|gb|ABV07589.1| transcription termination/antitermination factor NusA [Escherichia coli HS] gi|157077713|gb|ABV17421.1| transcription termination/antitermination factor NusA [Escherichia coli E24377A] gi|169753507|gb|ACA76206.1| NusA antitermination factor [Escherichia coli ATCC 8739] gi|169890541|gb|ACB04248.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. DH10B] gi|188488066|gb|EDU63169.1| transcription termination/antitermination factor NusA [Escherichia coli 53638] gi|189367615|gb|EDU86031.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4501] gi|189374081|gb|EDU92497.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC869] gi|189379809|gb|EDU98225.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC508] gi|190907546|gb|EDV67142.1| transcription termination/antitermination factor NusA [Escherichia coli F11] gi|192932390|gb|EDV84988.1| transcription termination/antitermination factor NusA [Escherichia coli E22] gi|194418052|gb|EDX34146.1| transcription termination/antitermination factor NusA [Shigella dysenteriae 1012] gi|209758328|gb|ACI77476.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758330|gb|ACI77477.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758332|gb|ACI77478.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758334|gb|ACI77479.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|215266559|emb|CAS10998.1| transcription termination/antitermination L factor [Escherichia coli O127:H6 str. E2348/69] gi|217319090|gb|EEC27515.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. TW14588] gi|218353608|emb|CAU99800.1| transcription termination/antitermination L factor [Escherichia coli 55989] gi|218362509|emb|CAR00133.1| transcription termination/antitermination L factor [Escherichia coli IAI1] gi|218367010|emb|CAR04781.1| transcription termination/antitermination L factor [Escherichia coli S88] gi|218429025|emb|CAR09972.2| transcription termination/antitermination L factor [Escherichia coli ED1a] gi|222034888|emb|CAP77631.1| Transcription elongation protein nusA [Escherichia coli LF82] gi|226839959|gb|EEH71980.1| transcription termination/antitermination factor NusA [Escherichia sp. 1_1_43] gi|226899118|gb|EEH85377.1| transcription termination/antitermination factor NusA [Escherichia sp. 3_2_53FAA] gi|227835288|gb|EEJ45754.1| N utilization substance A [Escherichia coli 83972] gi|238863681|gb|ACR65679.1| transcription termination/antitermination L factor [Escherichia coli BW2952] gi|242378714|emb|CAQ33504.1| transcription termination/antitermination L factor [Escherichia coli BL21(DE3)] gi|253323039|gb|ACT27641.1| NusA antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975014|gb|ACT40685.1| transcription elongation factor NusA [Escherichia coli B str. REL606] gi|253979170|gb|ACT44840.1| transcription elongation factor NusA [Escherichia coli BL21(DE3)] gi|257761131|dbj|BAI32628.1| transcription termination/antitermination L factor NusA [Escherichia coli O103:H2 str. 12009] gi|260447802|gb|ACX38224.1| NusA antitermination factor [Escherichia coli DH1] gi|281180213|dbj|BAI56543.1| N utilization substance protein A [Escherichia coli SE15] gi|281602553|gb|ADA75537.1| Transcription elongation protein nusA [Shigella flexneri 2002017] gi|290764418|gb|ADD58379.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str. CB9615] gi|291322595|gb|EFE62024.1| transcription elongation protein nusA [Escherichia coli B088] gi|291431958|gb|EFF04941.1| transcription elongation protein nusA [Escherichia coli B185] gi|294490229|gb|ADE88985.1| transcription termination/antitermination factor NusA [Escherichia coli IHE3034] gi|299879881|gb|EFI88092.1| transcription termination factor NusA [Escherichia coli MS 196-1] gi|300300131|gb|EFJ56516.1| transcription termination factor NusA [Escherichia coli MS 185-1] gi|300308213|gb|EFJ62733.1| transcription termination factor NusA [Escherichia coli MS 200-1] gi|300317388|gb|EFJ67172.1| transcription termination factor NusA [Escherichia coli MS 175-1] gi|300403706|gb|EFJ87244.1| transcription termination factor NusA [Escherichia coli MS 84-1] gi|300407077|gb|EFJ90615.1| transcription termination factor NusA [Escherichia coli MS 45-1] gi|300413950|gb|EFJ97260.1| transcription termination factor NusA [Escherichia coli MS 115-1] gi|300417857|gb|EFK01168.1| transcription termination factor NusA [Escherichia coli MS 182-1] gi|300451708|gb|EFK15328.1| transcription termination factor NusA [Escherichia coli MS 116-1] gi|300462221|gb|EFK25714.1| transcription termination factor NusA [Escherichia coli MS 187-1] gi|300523636|gb|EFK44705.1| transcription termination factor NusA [Escherichia coli MS 119-7] gi|300529877|gb|EFK50939.1| transcription termination factor NusA [Escherichia coli MS 107-1] gi|300842756|gb|EFK70516.1| transcription termination factor NusA [Escherichia coli MS 124-1] gi|300846897|gb|EFK74657.1| transcription termination factor NusA [Escherichia coli MS 78-1] gi|301076825|gb|EFK91631.1| transcription termination factor NusA [Escherichia coli MS 146-1] gi|305850052|gb|EFM50511.1| transcription elongation factor NusA [Escherichia coli NC101] gi|306907035|gb|EFN37543.1| transcription termination factor NusA [Escherichia coli W] gi|307555265|gb|ADN48040.1| transcription pausing [Escherichia coli ABU 83972] gi|307625230|gb|ADN69534.1| transcription elongation factor NusA [Escherichia coli UM146] gi|309703597|emb|CBJ02937.1| transcription elongation protein [Escherichia coli ETEC H10407] gi|312286710|gb|EFR14621.1| transcription elongation protein nusA [Escherichia coli 2362-75] gi|312947728|gb|ADR28555.1| transcription elongation factor NusA [Escherichia coli O83:H1 str. NRG 857C] gi|313648589|gb|EFS13031.1| transcription elongation protein nusA [Shigella flexneri 2a str. 2457T] gi|315062477|gb|ADT76804.1| transcription termination/antitermination L factor [Escherichia coli W] gi|315137757|dbj|BAJ44916.1| transcription elongation protein nusA [Escherichia coli DH1] gi|315257095|gb|EFU37063.1| transcription termination factor NusA [Escherichia coli MS 85-1] gi|315297879|gb|EFU57149.1| transcription termination factor NusA [Escherichia coli MS 16-3] gi|315617252|gb|EFU97861.1| transcription elongation protein nusA [Escherichia coli 3431] gi|320181445|gb|EFW56363.1| Transcription termination protein NusA [Shigella boydii ATCC 9905] gi|320189523|gb|EFW64182.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. EC1212] gi|320194655|gb|EFW69285.1| Transcription termination protein NusA [Escherichia coli WV_060327] gi|320202083|gb|EFW76658.1| Transcription termination protein NusA [Escherichia coli EC4100B] gi|320640241|gb|EFX09813.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. G5101] gi|320645538|gb|EFX14547.1| transcription elongation factor NusA [Escherichia coli O157:H- str. 493-89] gi|320650848|gb|EFX19305.1| transcription elongation factor NusA [Escherichia coli O157:H- str. H 2687] gi|320656229|gb|EFX24141.1| transcription elongation factor NusA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661919|gb|EFX29327.1| transcription elongation factor NusA [Escherichia coli O55:H7 str. USDA 5905] gi|320666754|gb|EFX33733.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. LSU-61] gi|323162863|gb|EFZ48698.1| transcription elongation protein nusA [Escherichia coli E128010] gi|323165127|gb|EFZ50917.1| transcription elongation protein nusA [Shigella sonnei 53G] gi|323189208|gb|EFZ74492.1| transcription elongation protein nusA [Escherichia coli RN587/1] gi|323376935|gb|ADX49203.1| NusA antitermination factor [Escherichia coli KO11] gi|323936135|gb|EGB32429.1| transcription termination protein NusA [Escherichia coli E1520] gi|323941729|gb|EGB37908.1| transcription termination protein NusA [Escherichia coli E482] gi|323946975|gb|EGB42991.1| transcription termination protein NusA [Escherichia coli H120] gi|323951311|gb|EGB47186.1| transcription termination protein NusA [Escherichia coli H252] gi|323957682|gb|EGB53396.1| transcription termination protein NusA [Escherichia coli H263] gi|323961059|gb|EGB56674.1| transcription termination protein NusA [Escherichia coli H489] gi|323970266|gb|EGB65537.1| transcription termination protein NusA [Escherichia coli TA007] gi|324012105|gb|EGB81324.1| transcription termination factor NusA [Escherichia coli MS 60-1] gi|324119536|gb|EGC13418.1| transcription termination protein NusA [Escherichia coli E1167] gi|326337871|gb|EGD61705.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. 1125] gi|326347440|gb|EGD71165.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. 1044] gi|330909225|gb|EGH37739.1| transcription termination protein NusA [Escherichia coli AA86] gi|331037340|gb|EGI09564.1| L factor [Escherichia coli H736] gi|331042717|gb|EGI14859.1| L factor [Escherichia coli M605] gi|331048157|gb|EGI20234.1| L factor [Escherichia coli M718] gi|331054040|gb|EGI26069.1| L factor [Escherichia coli TA206] gi|331062911|gb|EGI34825.1| L factor [Escherichia coli TA271] gi|331068146|gb|EGI39542.1| L factor [Escherichia coli TA280] gi|331073315|gb|EGI44638.1| L factor [Escherichia coli H591] gi|331078433|gb|EGI49639.1| L factor [Escherichia coli H299] gi|332086099|gb|EGI91261.1| transcription elongation protein nusA [Shigella boydii 5216-82] gi|332086431|gb|EGI91578.1| transcription elongation protein nusA [Shigella dysenteriae 155-74] gi|332102352|gb|EGJ05698.1| transcription pausing [Shigella sp. D9] gi|332345126|gb|AEE58460.1| transcription elongation protein NusA [Escherichia coli UMNK88] gi|332752329|gb|EGJ82719.1| transcription elongation protein nusA [Shigella flexneri 4343-70] gi|332752856|gb|EGJ83241.1| transcription elongation protein nusA [Shigella flexneri K-671] gi|332754694|gb|EGJ85060.1| transcription elongation protein nusA [Shigella flexneri 2747-71] gi|332765166|gb|EGJ95393.1| transcription termination/antitermination L factor [Shigella flexneri 2930-71] gi|332998811|gb|EGK18407.1| transcription elongation protein nusA [Shigella flexneri VA-6] gi|332999248|gb|EGK18834.1| transcription elongation protein nusA [Shigella flexneri K-272] gi|333014625|gb|EGK33972.1| transcription elongation protein nusA [Shigella flexneri K-304] gi|333014970|gb|EGK34314.1| transcription elongation protein nusA [Shigella flexneri K-227] Length = 495 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|283788203|ref|YP_003368068.1| transcription elongation protein [Citrobacter rodentium ICC168] gi|282951657|emb|CBG91357.1| transcription elongation protein [Citrobacter rodentium ICC168] Length = 495 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTQPTKEITLEAARFEDESLNLGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ ++ L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGMNRELAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|323979112|gb|EGB74190.1| transcription termination protein NusA [Escherichia coli TW10509] Length = 495 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQPQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|194438826|ref|ZP_03070912.1| transcription termination/antitermination factor NusA [Escherichia coli 101-1] gi|194422298|gb|EDX38299.1| transcription termination/antitermination factor NusA [Escherichia coli 101-1] Length = 495 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ V TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQTVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|315288929|gb|EFU48327.1| transcription termination factor NusA [Escherichia coli MS 110-3] Length = 495 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNCDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|291616009|ref|YP_003518751.1| NusA [Pantoea ananatis LMG 20103] gi|291151039|gb|ADD75623.1| NusA [Pantoea ananatis LMG 20103] Length = 500 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 7 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 66 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 67 WEIVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 126 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 127 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 186 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 187 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 247 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 307 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 366 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + + Sbjct: 367 HLDIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 426 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 427 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 476 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 477 -------GLTDEQAGALIMAAR-NICWFGDD 499 >gi|82778483|ref|YP_404832.1| transcription elongation factor NusA [Shigella dysenteriae Sd197] gi|309785496|ref|ZP_07680127.1| transcription elongation protein nusA [Shigella dysenteriae 1617] gi|81242631|gb|ABB63341.1| transcription pausing [Shigella dysenteriae Sd197] gi|308926616|gb|EFP72092.1| transcription elongation protein nusA [Shigella dysenteriae 1617] Length = 495 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLTFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|168754150|ref|ZP_02779157.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4401] gi|168769587|ref|ZP_02794594.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4486] gi|168773164|ref|ZP_02798171.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4196] gi|168781312|ref|ZP_02806319.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4076] gi|195938389|ref|ZP_03083771.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. EC4024] gi|208806905|ref|ZP_03249242.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4206] gi|208814506|ref|ZP_03255835.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4045] gi|208820220|ref|ZP_03260540.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4042] gi|209398727|ref|YP_002272640.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4115] gi|254795120|ref|YP_003079957.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. TW14359] gi|187770909|gb|EDU34753.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4196] gi|189001070|gb|EDU70056.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4076] gi|189358578|gb|EDU76997.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4401] gi|189361406|gb|EDU79825.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4486] gi|208726706|gb|EDZ76307.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4206] gi|208735783|gb|EDZ84470.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4045] gi|208740343|gb|EDZ88025.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4042] gi|209160127|gb|ACI37560.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4115] gi|209758336|gb|ACI77480.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|254594520|gb|ACT73881.1| transcription termination/antitermination L factor [Escherichia coli O157:H7 str. TW14359] Length = 495 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQVQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|304396347|ref|ZP_07378228.1| transcription termination factor NusA [Pantoea sp. aB] gi|304355856|gb|EFM20222.1| transcription termination factor NusA [Pantoea sp. aB] Length = 495 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 472 -------GLSDEQAGALIMAAR-NICWFGDD 494 >gi|157148740|ref|YP_001456059.1| transcription elongation factor NusA [Citrobacter koseri ATCC BAA-895] gi|157085945|gb|ABV15623.1| hypothetical protein CKO_04570 [Citrobacter koseri ATCC BAA-895] Length = 495 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTLPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + S++L ++ G+ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPSDDLLNLEGLGRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|308189112|ref|YP_003933243.1| Transcription elongation protein nusA [Pantoea vagans C9-1] gi|308059622|gb|ADO11794.1| Transcription elongation protein nusA [Pantoea vagans C9-1] Length = 495 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 472 -------GMSDEQAGALIMAAR-NICWFGDD 494 >gi|271499173|ref|YP_003332198.1| transcription termination factor NusA [Dickeya dadantii Ech586] gi|270342728|gb|ACZ75493.1| transcription termination factor NusA [Dickeya dadantii Ech586] Length = 496 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 316/508 (62%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALAN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++Q +I+ AR + W Sbjct: 472 -------GLNEEQAGELIMAAR-NICWF 491 >gi|260596201|ref|YP_003208772.1| transcription elongation factor NusA [Cronobacter turicensis z3032] gi|260215378|emb|CBA27401.1| Transcription elongation protein nusA [Cronobacter turicensis z3032] Length = 495 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTREITLEAARYEDPSLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ ++G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATILVEEGFSTLEELAYVPMKELLEVDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T++DLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADID---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NIRWFSDE 494 >gi|110807038|ref|YP_690558.1| transcription elongation factor NusA [Shigella flexneri 5 str. 8401] gi|110616586|gb|ABF05253.1| transcription elongation factor NusA [Shigella flexneri 5 str. 8401] Length = 495 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVIFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|251791036|ref|YP_003005757.1| transcription elongation factor NusA [Dickeya zeae Ech1591] gi|247539657|gb|ACT08278.1| NusA antitermination factor [Dickeya zeae Ech1591] Length = 496 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPINELQEIDGLDEETIEALRERAKAALTTLALAN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++Q +I+ AR + W Sbjct: 472 -------GLDEEQAGELIMAAR-NICWF 491 >gi|82545591|ref|YP_409538.1| transcription elongation factor NusA [Shigella boydii Sb227] gi|187731710|ref|YP_001881914.1| transcription elongation factor NusA [Shigella boydii CDC 3083-94] gi|81247002|gb|ABB67710.1| NusA [Shigella boydii Sb227] gi|187428702|gb|ACD07976.1| transcription termination/antitermination factor NusA [Shigella boydii CDC 3083-94] gi|320175533|gb|EFW50629.1| Transcription termination protein NusA [Shigella dysenteriae CDC 74-1112] gi|320186658|gb|EFW61382.1| Transcription termination protein NusA [Shigella flexneri CDC 796-83] gi|332090718|gb|EGI95812.1| transcription elongation protein nusA [Shigella boydii 3594-74] Length = 495 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ ++LGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GVTDEKAGALIMAAR-NICWFGDE 494 >gi|237730089|ref|ZP_04560570.1| transcription elongation factor NusA [Citrobacter sp. 30_2] gi|226908695|gb|EEH94613.1| transcription elongation factor NusA [Citrobacter sp. 30_2] Length = 495 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIVTGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGFA +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEQTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D ++ L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGLDREMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|327396260|dbj|BAK13682.1| transcription elongation protein NusA [Pantoea ananatis AJ13355] Length = 495 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEIVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 472 -------GLTDEQAGALIMAAR-NICWFGDD 494 >gi|295097658|emb|CBK86748.1| transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 500 Score = 604 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGLPGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL Sbjct: 422 LALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|110643410|ref|YP_671140.1| transcription elongation factor NusA [Escherichia coli 536] gi|110345002|gb|ABG71239.1| N utilization substance protein A [Escherichia coli 536] Length = 495 Score = 604 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGVQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + ++L ++ G+D + L G+ ++EDLA +DDL Sbjct: 422 EESLGDNKPCDDLLNLEGVDRDLAFKLAARGVCSLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|330991197|ref|ZP_08315149.1| Transcription elongation protein nusA [Gluconacetobacter sp. SXCC-1] gi|329761690|gb|EGG78182.1| Transcription elongation protein nusA [Gluconacetobacter sp. SXCC-1] Length = 523 Score = 603 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 285/521 (54%), Positives = 371/521 (71%), Gaps = 16/521 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ TGD+ Sbjct: 11 TSVARPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRRTGDVR 70 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 71 LSRWTEAVETVENEETQIPLYIARKFKPEIQLGEYLIDPLPPIDFGRIAAQTAKQVIVQR 130 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQ+ +FKD+VGEII+GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR Sbjct: 131 VREYERRRQFNDFKDRVGEIINGTVKRTEYGNLLVEIGDAEALLRRDELIPRESFRNSDR 190 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 191 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 250 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVG+RG RVQ VV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 251 ISRDAAIDPVGACVGVRGRRVQEVVKELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 310 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 311 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSSQ 370 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++VD++IA LLV EGF VEELA E+A+IEGFDE+ A E+ RA +L + Sbjct: 371 FVTSLDVDDVIAGLLVTEGFHSVEELAFADPEELANIEGFDEDVAGELVLRAERHLAQQE 430 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K RELGVS+++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 431 EQLDEKRRELGVSDDIAVLGVFTNQMLVTLGEKGVKTLDDLADLAGDELVE--------- 481 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 L S +D +I+ AR W E + D E Sbjct: 482 -----ILGSDAIDEDAANEIIMAARAH--WFEGDDRGDAEP 515 >gi|311277858|ref|YP_003940089.1| NusA antitermination factor [Enterobacter cloacae SCF1] gi|308747053|gb|ADO46805.1| NusA antitermination factor [Enterobacter cloacae SCF1] Length = 500 Score = 603 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 203/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGMVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L Sbjct: 362 DTFTKYLDIDEEFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + +++L ++ G+D + L G+ T+EDLA VDDL E Sbjct: 422 LALAQEESLGNNKPADDLLNLEGLDRAMAFKLAARGVCTLEDLAEQGVDDLADIEE---- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 -------------MTDEKAGELIMAAR-NICWFGDE 499 >gi|296104883|ref|YP_003615029.1| transcription elongation factor NusA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059342|gb|ADF64080.1| transcription elongation factor NusA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 500 Score = 603 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL Sbjct: 422 LALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|307129384|ref|YP_003881400.1| transcription termination/antitermination L factor [Dickeya dadantii 3937] gi|306526913|gb|ADM96843.1| transcription termination/antitermination L factor [Dickeya dadantii 3937] Length = 496 Score = 603 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 316/508 (62%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALAN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + Q +I+ AR + W Sbjct: 472 -------GLDEAQAGELIMAAR-NICWF 491 >gi|261342615|ref|ZP_05970473.1| L factor [Enterobacter cancerogenus ATCC 35316] gi|288315263|gb|EFC54201.1| L factor [Enterobacter cancerogenus ATCC 35316] Length = 500 Score = 603 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEATVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL Sbjct: 422 LALAQEESLGDNKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|315294914|gb|EFU54253.1| transcription termination factor NusA [Escherichia coli MS 153-1] Length = 495 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ID VGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDLVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|56460077|ref|YP_155358.1| transcription elongation factor NusA [Idiomarina loihiensis L2TR] gi|56179087|gb|AAV81809.1| Transcription elongation factor NusA [Idiomarina loihiensis L2TR] Length = 499 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 205/516 (39%), Positives = 324/516 (62%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y ++R++I+ TG+ FR Sbjct: 2 SKEILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIEVRIDIDRTTGEFDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +E+ +ISL A+ DPS+ G V + + + F R+ Q+AKQVI+QK Sbjct: 62 WLVVEDTDSGLEHPYREISLSAAQYEDPSVQAGDYVEEQIDSIQFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + E++++VGE++SG VKR +VI+DLGN ++ +I RDE + RE++RPGD Sbjct: 122 VREAERAQVVDEYREQVGEMVSGIVKRANREHVILDLGNNAEAIIYRDEMLPRESVRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +YDVR E RG Q+ +SRT+P F+++LF +EVPEI +++++ +RDPGSRAK+A Sbjct: 182 RIRGLLYDVRPEARGAQLFVSRTNPNFLLELFRIEVPEIGEEMIELRGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +V Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQYVINAMAPAEVASIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIG+ GQNVRLASQLTGWT++++TE+E + + + Sbjct: 302 VDEDAHTMDIAVAADNLAQAIGKGGQNVRLASQLTGWTLNVMTEDEFNEKNEAETQRLLN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++DE A++LV EGF+ +EE+A V ++E IEG DE+ E++ RAR YL Sbjct: 362 LFVSTLDIDEDFANVLVDEGFSSLEEVAYVPVAEFLDIEGMDEDIVEELRSRARAYLTTK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + L ++ G++ + L G+ T+E+LA VDDL E Sbjct: 422 ALATEESLESAEPDDTLLNLEGMERHLAYVLASKGVTTLEELAEQGVDDLADIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + Q +I+ AR + W +E+ Sbjct: 477 ------------LNEQQAGDLIMKAR-NICWFNEEQ 499 >gi|148556720|ref|YP_001264302.1| transcription elongation factor NusA [Sphingomonas wittichii RW1] gi|148501910|gb|ABQ70164.1| NusA antitermination factor [Sphingomonas wittichii RW1] Length = 529 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 289/526 (54%), Positives = 384/526 (73%), Gaps = 14/526 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IADAVA EK IDR++V+ M D+IQ+AAR+ YG +DIR +I+ +TGD+ Sbjct: 5 ISANRAELLAIADAVAREKLIDREIVIEAMEDAIQRAARARYGAENDIRAKIDGKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE+V++Y Q+S+ A+ IG + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVEQVDDYFKQVSVADAQKLQKDAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ EII+G VKRVE+G+V+VDLG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQYEEFKDRANEIITGVVKRVEFGHVVVDLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I VRRE RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRSLILSVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+ Sbjct: 245 ISHDGSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F + ++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDILTEADASEKRQKEFLQNSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V++ E+ASIEGFDEE E+Q RA+E LE + Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELASIEGFDEELGAELQSRAQEALERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE------ 475 +++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 AAAREERRSLGVEDALAELPYLTEAMLVTLGKAGIKTLDDLADLATDELIQKKRPEQRRR 484 Query: 476 ------NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +G E G L+ G ++Q +I+ AR W E Sbjct: 485 QNSDRPERGDREENKGGVLAEYGLSEEQGNEIIMAARAH--WFTDE 528 >gi|300718578|ref|YP_003743381.1| transcription elongation protein [Erwinia billingiae Eb661] gi|299064414|emb|CAX61534.1| Transcription elongation protein [Erwinia billingiae Eb661] Length = 495 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 318/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIEVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L AR D ++++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVDEVTMPTREITLDAARYEDEALNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ + GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRQQEGEIITGVVKKVNRDNISLDLGSNAEAVIIREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEDFATVLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G+D ++ L G+ T+EDLA VDDL Sbjct: 422 EESLGDNQPAEDLLNLEGLDRELAFKLAAIGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q +I+ AR + W + Sbjct: 472 -------GLNDEQAGELIMAAR-NICWFGDD 494 >gi|85058354|ref|YP_454056.1| transcription elongation factor NusA [Sodalis glossinidius str. 'morsitans'] gi|84778874|dbj|BAE73651.1| transcription pausing L factor [Sodalis glossinidius str. 'morsitans'] Length = 495 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 203/510 (39%), Positives = 312/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIEVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L A+ DP+ IGG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLDAAQFDDPTAQIGGYIEDEIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRSHEGEIVTGVVKKVNRDSISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDIFTR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L + + Sbjct: 362 NLDIDEEFATVLVEEGFSSLEELAYVPINELLEIEGLDEETVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L +P ++ + L G+ T+EDLA VDDL Sbjct: 422 EENRGAGVPAEDLLGLPELERDMAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G ++ +I+ AR + W Sbjct: 472 -------GLSSEKAGELIMAAR-NICWFGD 493 >gi|317046740|ref|YP_004114388.1| transcription termination factor NusA [Pantoea sp. At-9b] gi|316948357|gb|ADU67832.1| transcription termination factor NusA [Pantoea sp. At-9b] Length = 495 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAARFEDEAFNLGDFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ G+II+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGDIITGVVKKVNRDNITLDLGSNAEAVIVREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ I+G DE+T ++ RA+ L + + Sbjct: 362 HLDIDEEFATILVEEGFSSLEELAYVPINELLEIDGLDEDTVEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESRGNQEPAEDLLNLEGLDRALAYRLAAIGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W + Sbjct: 472 -------GLDDEKAGALIMAAR-NICWFGDD 494 >gi|161506147|ref|YP_001573259.1| transcription elongation factor NusA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867494|gb|ABX24117.1| hypothetical protein SARI_04337 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 500 Score = 602 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAETHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKHLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|146313241|ref|YP_001178315.1| transcription elongation factor NusA [Enterobacter sp. 638] gi|145320117|gb|ABP62264.1| NusA antitermination factor [Enterobacter sp. 638] Length = 495 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 314/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARYEDESFNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRSHEGEIITGVVKKVNRDNIALDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKAEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAAIATFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE A +LV EGF+ +EELA V I E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLEIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEATVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D I L +G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGLDRAIAFKLAAHGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|242240750|ref|YP_002988931.1| transcription elongation factor NusA [Dickeya dadantii Ech703] gi|242132807|gb|ACS87109.1| NusA antitermination factor [Dickeya dadantii Ech703] Length = 496 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 204/510 (40%), Positives = 316/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQDIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ +P +D+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEEPEVDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDVFTR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 YLDIDEEFATALVEEGFSSLEELAYVPITELQEIDGLDEETIEALRERAKAALTTLALAR 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGAGQPAEDLLNLAGLPREMAFTLAARGVCTLEDLAEQGVDDLTDID---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ +I+ AR + W Sbjct: 472 -------GLNEERAGELIMAAR-NICWFGD 493 >gi|283836285|ref|ZP_06356026.1| L factor [Citrobacter youngae ATCC 29220] gi|291067648|gb|EFE05757.1| L factor [Citrobacter youngae ATCC 29220] Length = 500 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 203/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LALAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAEQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|292486836|ref|YP_003529706.1| transcription elongation protein nusA [Erwinia amylovora CFBP1430] gi|292900766|ref|YP_003540135.1| transcription elongation protein [Erwinia amylovora ATCC 49946] gi|291200614|emb|CBJ47746.1| transcription elongation protein [Erwinia amylovora ATCC 49946] gi|291552253|emb|CBA19290.1| Transcription elongation protein nusA [Erwinia amylovora CFBP1430] gi|312170904|emb|CBX79163.1| Transcription elongation protein nusA [Erwinia amylovora ATCC BAA-2158] Length = 501 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 318/517 (61%), Gaps = 25/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAALYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDID---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 478 -------------GLSNERAGELIMAAR-NICWFGDD 500 >gi|168237988|ref|ZP_02663046.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733934|ref|YP_002116237.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709436|gb|ACF88657.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289151|gb|EDY28520.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 500 Score = 600 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|296114401|ref|ZP_06833055.1| transcription elongation factor NusA [Gluconacetobacter hansenii ATCC 23769] gi|295979162|gb|EFG85886.1| transcription elongation factor NusA [Gluconacetobacter hansenii ATCC 23769] Length = 516 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 287/523 (54%), Positives = 376/523 (71%), Gaps = 16/523 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFRPEIQLGEHLIDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY +FKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYNDFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSNQ 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADADELAGIEGFDEDVASELVRRAEGFLARRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K R LGVS+++ ++ ++ V LGE G+KT++DLA + D+L+ Sbjct: 423 EEMDEKRRALGVSDDIAALGVFTVQMLVTLGEKGVKTLDDLADLAGDELVD--------- 473 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 L ++ +I+ AR W E ++ +E + Sbjct: 474 -----ILGGDAIDEEAANEIIMAARAH--WFEGDESGADEAPE 509 >gi|16766585|ref|NP_462200.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415219|ref|YP_152294.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181798|ref|YP_218215.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616293|ref|YP_001590258.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552065|ref|ZP_02345818.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990148|ref|ZP_02571248.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231896|ref|ZP_02656954.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243121|ref|ZP_02668053.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262702|ref|ZP_02684675.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463490|ref|ZP_02697407.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819644|ref|ZP_02831644.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442917|ref|YP_002042544.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450306|ref|YP_002047316.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469393|ref|ZP_03075377.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248686|ref|YP_002148213.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265797|ref|ZP_03165871.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364149|ref|YP_002143786.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243925|ref|YP_002217260.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388465|ref|ZP_03215077.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928046|ref|ZP_03219246.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858537|ref|YP_002245188.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585085|ref|YP_002638884.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910082|ref|ZP_04653919.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141550|sp|P37430|NUSA_SALTY RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|16421846|gb|AAL22159.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129476|gb|AAV78982.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129431|gb|AAX67134.1| transcription pausing; L factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365657|gb|ABX69425.1| hypothetical protein SPAB_04099 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401580|gb|ACF61802.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408610|gb|ACF68829.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455757|gb|EDX44596.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633199|gb|EDX51613.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095626|emb|CAR61194.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212389|gb|ACH49786.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244052|gb|EDY26672.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938441|gb|ACH75774.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605563|gb|EDZ04108.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322368|gb|EDZ07565.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323222|gb|EDZ11061.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331138|gb|EDZ17902.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333927|gb|EDZ20691.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337851|gb|EDZ24615.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343493|gb|EDZ30257.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348590|gb|EDZ35221.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710340|emb|CAR34698.1| L factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469613|gb|ACN47443.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248453|emb|CBG26290.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995484|gb|ACY90369.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159837|emb|CBW19356.1| transcription termination/antitermination L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914313|dbj|BAJ38287.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087734|emb|CBY97498.1| Transcription elongation protein nusA N utilization substance protein A; L factor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225971|gb|EFX51025.1| Transcription termination protein NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615292|gb|EFY12213.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618349|gb|EFY15240.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622846|gb|EFY19690.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626832|gb|EFY23629.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631401|gb|EFY28161.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635332|gb|EFY32046.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643467|gb|EFY40030.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647097|gb|EFY43598.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648900|gb|EFY45345.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655092|gb|EFY51403.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657695|gb|EFY53963.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664191|gb|EFY60389.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667474|gb|EFY63636.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674722|gb|EFY70814.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675645|gb|EFY71718.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682281|gb|EFY78304.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684884|gb|EFY80882.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716285|gb|EFZ07856.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131647|gb|ADX19077.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191869|gb|EFZ77117.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199028|gb|EFZ84125.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204272|gb|EFZ89281.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207619|gb|EFZ92566.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211328|gb|EFZ96172.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214730|gb|EFZ99479.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221210|gb|EGA05636.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224049|gb|EGA08342.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230302|gb|EGA14421.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233278|gb|EGA17372.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239315|gb|EGA23365.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242434|gb|EGA26460.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246944|gb|EGA30910.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254123|gb|EGA37943.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255240|gb|EGA39017.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262703|gb|EGA46259.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264013|gb|EGA47521.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269399|gb|EGA52854.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625038|gb|EGE31383.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990145|gb|AEF09128.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 500 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|71908071|ref|YP_285658.1| transcription elongation factor NusA [Dechloromonas aromatica RCB] gi|71847692|gb|AAZ47188.1| NusA antitermination factor [Dechloromonas aromatica RCB] Length = 490 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 330/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +++V + ++ A + +D+R+ I+ +TG FR + Sbjct: 4 EILLLVDALAREKNVSKEIVFGALELALASATKKRINDEADVRISIDRDTGSFESFRRWQ 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E N +I L A+ DP I+ G + +PL P+DFGR+ Q+AKQVI+QK+R+A Sbjct: 64 VVPDNEYVNEFLEIPLSDAQKDDPEIEPGDSLEEPLEPIDFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++SGT+KR+E GN I++ G + ++ RD+ I +ENLR GDRV++Y Sbjct: 124 EREQILADFLGRGEHVVSGTIKRMERGNAIIEAGKIEAMLPRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF MEVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRNARGPQIILSRTAPEFVIKLFDMEVPEISDGLMELKACARDPGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G CVG+RGSRV AV E+ E IDIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 PRVDPIGTCVGLRGSRVTAVRNEIGGENIDIVLWSADPAQFVIGALSPAEVSSIVVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L++AIGR GQNVRLAS+LTGWTI+++T++E + + +F E FM+ Sbjct: 304 HAMDVVVDEDNLAIAIGRNGQNVRLASELTGWTINLMTQDESAKKSEAEFAETRVVFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +++DE +A LL+ EGF+ +EE+A V ++E+ IEG DEE E++ RAR L I + Sbjct: 364 LDIDEELADLLIEEGFSTLEEVAYVPLAEMLEIEGLDEEIVNELRNRARNVLLTEAIATE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ VSE+L + G+ ++ L + +KT +DLA +VD+L + Sbjct: 424 EKLE--SVSEDLIGLEGMSKELAAKLAGHDVKTRDDLAELAVDELTEMT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ + +I+ AR W E Sbjct: 471 ------GIDDERAKDLILKARAH--WFE 490 >gi|320540176|ref|ZP_08039831.1| putative transcription termination/antitermination L factor [Serratia symbiotica str. Tucson] gi|320029842|gb|EFW11866.1| putative transcription termination/antitermination L factor [Serratia symbiotica str. Tucson] Length = 502 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 200/517 (38%), Positives = 311/517 (60%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ A+ +P ++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVVVDEVTQPTREITLEAAQYEEPDTELGGYIEDQIDSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ + Q + + Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQVKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+T ++ RAR Sbjct: 362 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRARAAS 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + +E+L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQKESLGGQEPAEDLLNLPGLERSMAFKLAARGVGTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G Q +I+ +R + W Sbjct: 479 --------------GLSNQQAGELIMASR-NICWFGD 500 >gi|188532503|ref|YP_001906300.1| transcription elongation factor NusA [Erwinia tasmaniensis Et1/99] gi|188027545|emb|CAO95392.1| Transcription elongation protein NusA (N utilization substance protein A) [Erwinia tasmaniensis Et1/99] Length = 501 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 317/517 (61%), Gaps = 25/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A D S +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAALYEDESFSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVSRDNISLEVRPNDGSSTNAEAVIIREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDIE---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 478 -------------GLSDERAGELIMAAR-NICWFGDD 500 >gi|205354191|ref|YP_002227992.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273972|emb|CAR38977.1| L factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629312|gb|EGE35655.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 500 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA + + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADIASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|83595108|ref|YP_428860.1| transcription elongation factor NusA [Rhodospirillum rubrum ATCC 11170] gi|83578022|gb|ABC24573.1| NusA antitermination factor [Rhodospirillum rubrum ATCC 11170] Length = 516 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 287/521 (55%), Positives = 385/521 (73%), Gaps = 21/521 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R EL+Q+AD VA +KSI+R+ V + M +IQKA RS YG DIR I+ +TG+I L R Sbjct: 9 RPELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIRLARY 68 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +EVVEEVEN QI+L A+ + I++G + DPLPP+DFGR+A Q+AKQVI+QKVR+A Sbjct: 69 IEVVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQKVRDA 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+RQ+ E+KD++GEII+G VKRVE+GNVIVD+G ++ ++RRDE I RE+ + GDR+++Y Sbjct: 129 ERERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGRAEALLRRDEVIPREHFKNGDRIRAY 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DVR+E RGPQ+ LSRTH QFM KLF EVPEIY+GI+++K+V+RDPGSRAK+AV S+D Sbjct: 189 IMDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSND 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVLDE+ Sbjct: 249 HAIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVLDEEA 308 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 RIEV+VP EQLSLAIGRRGQNVRLAS+LTGW IDI+TE E+S RQ +F RTQ F++A Sbjct: 309 NRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQAFIEA 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD++IAHLLV EGF VE++A V I+E++ IEGFDE+ A E+Q RA+ +L + + Sbjct: 369 LDVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERERLNE 428 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 ++ +ELGV +E+ I G+ + + VALGE G+KT++DL + D+L+ Sbjct: 429 ERRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIV----------- 477 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 G +D ++I+ AR W + A + DA+ Sbjct: 478 -----GGLNEDDANAVIMAARAH--WFGE---AGDSADDAT 508 >gi|162147158|ref|YP_001601619.1| transcription elongation factor NusA [Gluconacetobacter diazotrophicus PAl 5] gi|209544214|ref|YP_002276443.1| transcription elongation factor NusA [Gluconacetobacter diazotrophicus PAl 5] gi|161785735|emb|CAP55306.1| Transcription elongation protein nusA [Gluconacetobacter diazotrophicus PAl 5] gi|209531891|gb|ACI51828.1| NusA antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 523 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 286/511 (55%), Positives = 371/511 (72%), Gaps = 16/511 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAVA EK+IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVAREKAIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFKPEIQLGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYDEFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAYADPDELAEIEGFDEDVAGELVRRAEGFLARRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K R LGVS+++ ++ +++ V LGE G+K+++DLA + D+L+ Sbjct: 423 DELDEKRRGLGVSDDVAALGVFSNQMLVTLGEKGVKSLDDLADLAGDELVE--------- 473 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 L ++ +I+ AR W Sbjct: 474 -----ILGGEVIDEEAANEIIMAARAH--WF 497 >gi|16762052|ref|NP_457669.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143541|ref|NP_806883.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213621934|ref|ZP_03374717.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645859|ref|ZP_03375912.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25299784|pir||AI0901 L factor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504355|emb|CAD07807.1| L factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29139175|gb|AAO70743.1| L factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 500 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 316/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|259907041|ref|YP_002647397.1| transcription elongation factor NusA [Erwinia pyrifoliae Ep1/96] gi|224962663|emb|CAX54118.1| Transcription elongation protein NusA (N utilization substance protein A) [Erwinia pyrifoliae Ep1/96] gi|283476837|emb|CAY72675.1| Transcription elongation protein nusA [Erwinia pyrifoliae DSM 12163] gi|310766253|gb|ADP11203.1| transcription elongation factor NusA [Erwinia sp. Ejp617] Length = 501 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 317/517 (61%), Gaps = 25/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAAIYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A LLV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPIKELLEIDGLDEETVEALRDRAKNALT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDID---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 478 -------------GLSDERAGELIMAAR-NICWFGDD 500 >gi|262274884|ref|ZP_06052695.1| transcription termination protein NusA [Grimontia hollisae CIP 101886] gi|262221447|gb|EEY72761.1| transcription termination protein NusA [Grimontia hollisae CIP 101886] Length = 495 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 315/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALETALATATKKKYDADIDVRVAIDRKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTLPTREITLEAAQFDDETLELGSYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F + GE+I+G VK+V VIVDLGN ++ I+RD+ + REN RPGDRV+ Sbjct: 122 ERAQVVEQFMENEGELITGVVKKVNRDVVIVDLGNNAEAAIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI +++V +RDPGSRAK+AV ++ Sbjct: 182 LLYAVRPEARGFQLFMTRSKPEMLIELFRIEVPEIGEEMIEVMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ Q++ + + F + Sbjct: 302 THTMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVQDLQKKHQEEAGQSIELFSK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +E+ I G DE+T E++ RA+E L I + Sbjct: 362 HLDIDEDFAAVLVEEGFTTLEEVAYVPAAELLEINGLDEDTVEELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ + L GI T+EDLA DDLL Sbjct: 422 EEILEGAEPAEDLLGLEGLERDLAFRLAAKGICTLEDLADQGTDDLLDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W E Sbjct: 472 -------GMDEVKAGELIMAAR-NICWFSDE 494 >gi|117927003|ref|YP_867620.1| NusA antitermination factor [Magnetococcus sp. MC-1] gi|117610759|gb|ABK46214.1| NusA antitermination factor [Magnetococcus sp. MC-1] Length = 506 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 245/516 (47%), Positives = 351/516 (68%), Gaps = 21/516 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E+LQ+AD VA EK IDR VV+ M +IQ A+R YG +I+ +P++G+ L +L Sbjct: 3 VEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQLR 62 Query: 67 EVV-----EEVE-NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 EVV E+++ + ISL+ A +P G +++ LPPM+FGR+A Q+AKQVI+Q Sbjct: 63 EVVDLDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER+R + E+ D+ GE+++G VKRVE N+ VDLG + G + +E + RE+ RPGD Sbjct: 123 KVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGRTSGFLPHEEQLPREHYRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++++I +VR RGPQ++LSRTHPQ +V+LF MEVPEIY+GIV++KAV+RDPG R+K+A Sbjct: 183 RIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHRSKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D+ +DPVGACVGMRGSRVQ+VVTEL+ E+IDI+ WS D A FV NAL PA V KVV Sbjct: 243 VRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ I+V+V + LSLAIGRRGQNVRLAS+LTGW IDIITE+E+ R++ F E Q Sbjct: 303 VDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFGELQQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ +++ E +A +LV EGF EE+A V ++E+ SIEGFDEE A E++ RAR+ L Sbjct: 363 TFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDTLLQQ 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +++ EL + E L + + +AL E + T++DLA + D+L+ + Sbjct: 423 ALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFD----- 477 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + E++I+ AR GW + E+ Sbjct: 478 ----------GELTTEDAETLILGARRAAGWFDDEE 503 >gi|157368735|ref|YP_001476724.1| transcription elongation factor NusA [Serratia proteamaculans 568] gi|157320499|gb|ABV39596.1| NusA antitermination factor [Serratia proteamaculans 568] Length = 502 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L Sbjct: 362 AIDTFTKHLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 479 --------------GLSDEQAGELIMAAR-NICWFGD 500 >gi|289207909|ref|YP_003459975.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix] gi|288943540|gb|ADC71239.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix] Length = 495 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 211/516 (40%), Positives = 326/516 (63%), Gaps = 27/516 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAVA EK +D+D++ + ++ A R +G D+RV I+ E GD FR Sbjct: 2 NKEILLVADAVANEKGVDKDIIFDALESALAMATRKYHGGKMDVRVSIDREEGDYEAFRR 61 Query: 66 LEVVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV+ E E+ QI L A+ ++P +G V+ +P+ +DFGR+A Q+AKQVI+QK Sbjct: 62 WTVVDDEDPEFESPEYQILLSYAQQKNPDAQVGDVIEEPVEAVDFGRIAAQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + E++D+VG ++ G VKR + VDLGN ++ +I R+ I RE +R D Sbjct: 122 VREAERAKVVEEYQDRVGTLVMGIVKRTDRNGTYVDLGNNAEALIPREHMIPRETVRTND 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ ++R + RGPQ++LSR+ P+F+++LF +EVPE+ I+ + +RDPG RAK+A Sbjct: 182 RLRGYLKEIRPDARGPQLILSRSAPEFLIELFKLEVPEVGQEIIDIMGAARDPGQRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D +DPVGACVGMRGSRVQ+V EL E+IDI+VW + A FVINA+ PA V +V Sbjct: 242 VRSNDPRLDPVGACVGMRGSRVQSVSNELAGERIDIIVWDENPAQFVINAMSPAEVLSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++LSLAIGR GQN+RLASQLTGW ++++TEE+ + + + + Sbjct: 302 VDEDKQSMDIAVEEDKLSLAIGRGGQNIRLASQLTGWELNVMTEEQAAEKSEAEAQQLVT 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFM+A++VDE +A +LV EGF+ ++E+A V +E+ +IE FDE+ E++ RA + L Sbjct: 362 FFMEALDVDEEVAGILVQEGFSTLDEVAYVDEAELLAIEEFDEDIVAELRNRASDALLTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I + + +E+L S+ G+ + L +G+ TMEDLA + DD++ + Sbjct: 422 AIAGGENYQ---PAEDLLSMDGMTQGVANKLASHGVCTMEDLAEQAADDVVEMT------ 472 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +I+ AR W E + Sbjct: 473 -----------GLSTEEASELIMTARAP--WFETGE 495 >gi|270265058|ref|ZP_06193321.1| transcription elongation protein NusA [Serratia odorifera 4Rx13] gi|270040992|gb|EFA14093.1| transcription elongation protein NusA [Serratia odorifera 4Rx13] Length = 502 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L Sbjct: 362 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 479 --------------GLSDEQAGELIMAAR-NICWFGD 500 >gi|294011603|ref|YP_003545063.1| N utilization substance protein A [Sphingobium japonicum UT26S] gi|292674933|dbj|BAI96451.1| N utilization substance protein A [Sphingobium japonicum UT26S] Length = 523 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 280/520 (53%), Positives = 384/520 (73%), Gaps = 7/520 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEVVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L + Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + E G L+ G ++Q +I+ AR W E E+ Sbjct: 485 RENKEEDKGGILAEYGLTEEQGNEIIMAARAH--WFEGEE 522 >gi|85712989|ref|ZP_01044027.1| transcription elongation factor NusA [Idiomarina baltica OS145] gi|85693158|gb|EAQ31118.1| transcription elongation factor NusA [Idiomarina baltica OS145] Length = 497 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 325/514 (63%), Gaps = 23/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+R++I+ TG+ FR Sbjct: 2 SKEILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIDVRIDIDRATGEFDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +E+ +ISL A+ DPS+ +G V + + + F R+ Q+AKQVI+QK Sbjct: 62 WLVVEDTDTGLEHPYREISLSAAQYEDPSLQLGDYVEEQIESIQFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + E++D+VGE+++GTVKR +VI+DLGN ++ +I R+E + RE++RPGD Sbjct: 122 VREAERAQVVDEYRDQVGELVTGTVKRANREHVILDLGNNAEAIIYREEMLPRESVRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +YDVR E RG Q+ ++R+ P+F+++LF +EVPEI ++++K +RDPGSRAK+A Sbjct: 182 RVRGLLYDVRPEARGAQLFVTRSRPEFLMELFRIEVPEIGEEMIELKGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V Sbjct: 242 VKSNDRRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVASIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIG+ GQNVRLASQL+GWT++++T ++ + + + N Sbjct: 302 VDEDAHTMDIAVAADNLAQAIGKSGQNVRLASQLSGWTLNVMTVDDFNEKNEAETNRLLN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++++DE A +LV EGF+ +EE+A V ++E IEG DE+ E++GRAR YL Sbjct: 362 LFITSLDIDEDFASVLVDEGFSSLEEVAYVPVAEFLEIEGMDEDIVEELRGRARAYLTTK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + E L + G+D + L G+ ++E+LA +DDL G E Sbjct: 422 ALADEESLESAEPDESLLGLEGMDRHLAYVLASRGVTSLEELAEQGIDDLAGIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + Q +I+ AR + W + Sbjct: 477 ------------LDEQQAGDLIMKAR-NICWFSE 497 >gi|213052982|ref|ZP_03345860.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 495 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 199/512 (38%), Positives = 315/512 (61%), Gaps = 24/512 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR +V Sbjct: 1 MAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIV 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 61 EEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 120 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVK 183 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ Sbjct: 121 VVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIR 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV + Sbjct: 181 GVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DE Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F Sbjct: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFT 360 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 361 KYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQD 420 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 421 QEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE--------- 471 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 --------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|329295928|ref|ZP_08253264.1| transcription elongation factor NusA [Plautia stali symbiont] Length = 495 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 314/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A R Y D+RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATRKKYEQEIDVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T + +L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVVVEEVTQPTRETTLEAARFEDEAFNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVIVREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLAS L+ W ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASLLSSWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAYRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W + Sbjct: 472 -------GLDDEKAGALIMVAR-NICWFGDD 494 >gi|145298043|ref|YP_001140884.1| transcription elongation factor NusA [Aeromonas salmonicida subsp. salmonicida A449] gi|142850815|gb|ABO89136.1| transcription elongation factor nusA [Aeromonas salmonicida subsp. salmonicida A449] Length = 500 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 200/515 (38%), Positives = 315/515 (61%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYETYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + +EN +I+L+ A+ P I +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WVVVADQAAMENPYGEITLEAAQIEQPEIQLGDYVEDQIDSVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK++V Sbjct: 182 IRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++ Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKHQAENDRILTL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F A+++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L Sbjct: 362 FTSALDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDVLTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + + SE+L ++ G+ + AL G+ T+EDLA +DDL E Sbjct: 422 LAKEESLDGVEPSEDLLNLAGLGRDMAYALAARGVGTLEDLAEQGIDDLADIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W +E+ Sbjct: 476 -----------LTAEKAGELIMAAR-NICWFGEEQ 498 >gi|304310506|ref|YP_003810104.1| N utilization substance protein A [gamma proteobacterium HdN1] gi|301796239|emb|CBL44447.1| N utilization substance protein A [gamma proteobacterium HdN1] Length = 494 Score = 594 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 209/511 (40%), Positives = 320/511 (62%), Gaps = 23/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + + V+ EK + RDV+ + ++ A + + +D+RV IN TG +R Sbjct: 2 SKEILLVVETVSNEKGVPRDVIFEAVETALATATKKRFPNEDADVRVSINRTTGAYDTWR 61 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E ++L A D D IG + + +P +DFGR+A Q+AKQVI+QKV Sbjct: 62 RWTVVLDEDFEFPGRHMTLDEAHDHDTKYKIGDIYEEKIPSIDFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + F DK+G +++G VK+V NVI+DLG N++ ++ R++ I RE LR DR Sbjct: 122 REAERAQIADAFSDKIGHLVNGVVKKVTRDNVILDLGGNAEALLPREDLIGRETLRVNDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ ++ + +E RG Q+ +SR P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV Sbjct: 182 VRGVLFSINKENRGAQLYVSRARPEMLIELFKIEVPEIGEDIIEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDQRIDPVGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQFVINAMSPAEVVSIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +EQL+LAIGR GQN+RLAS+L+GW ++++T ++ ++++ + Sbjct: 302 DEESHSMDIAVEEEQLALAIGRGGQNIRLASELSGWELNVMTVKDAEAKQRQESESYLKV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + VDE +A +LV EGFA VEE+A V E+ SIEGFDE+ E++ RA+ L Sbjct: 362 FMDELGVDEELAQVLVDEGFASVEEVAYVPKEEMLSIEGFDEDLVDELRSRAKNALLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +++ + +++L S+ G+D ++ +AL + GI TMEDLA +VDDLL Sbjct: 422 LVDEEQNQGGSPADDLLSMEGMDKELALALAKKGICTMEDLAEQAVDDLLDIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ ++I+ AR W Sbjct: 475 ----------NLDAEKAAALIMTARAP--WF 493 >gi|156975664|ref|YP_001446571.1| transcription elongation factor NusA [Vibrio harveyi ATCC BAA-1116] gi|156527258|gb|ABU72344.1| hypothetical protein VIBHAR_03397 [Vibrio harveyi ATCC BAA-1116] Length = 495 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 320/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 2 SKEILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + Sbjct: 362 YLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGEE 494 >gi|269961979|ref|ZP_06176334.1| N utilization substance protein A [Vibrio harveyi 1DA3] gi|269833302|gb|EEZ87406.1| N utilization substance protein A [Vibrio harveyi 1DA3] Length = 495 Score = 593 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 320/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 2 SKEILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLITGVVKKVNRETVVMDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + Sbjct: 362 YLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGEE 494 >gi|307293340|ref|ZP_07573186.1| transcription termination factor NusA [Sphingobium chlorophenolicum L-1] gi|306881406|gb|EFN12622.1| transcription termination factor NusA [Sphingobium chlorophenolicum L-1] Length = 523 Score = 593 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 280/520 (53%), Positives = 384/520 (73%), Gaps = 7/520 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEAVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L + Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + E G L+ G ++Q +I+ AR W E E+ Sbjct: 485 RENKEEDKGGILAEYGLSEEQGNEIIMAARAH--WFEGEE 522 >gi|255019834|ref|ZP_05291910.1| Transcription termination protein NusA [Acidithiobacillus caldus ATCC 51756] gi|254970763|gb|EET28249.1| Transcription termination protein NusA [Acidithiobacillus caldus ATCC 51756] Length = 493 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 230/508 (45%), Positives = 337/508 (66%), Gaps = 22/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +ADAVA+EK +DR+V+ + S+ A++ YG DI V ++ +TGD + R Sbjct: 4 ELLYLADAVAHEKEVDREVIFQALEASLVSASKKKYGPNWDIVVTVDRKTGDYTTRRRWT 63 Query: 68 VV-EEVENYTCQ--ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV ++ E++ + I L AR RD I +G V+ + LP ++FGR+A Q+AKQVI+Q+VR+ Sbjct: 64 VVADDAEDFEAEAQIRLSDARARDQGIAVGDVIEEELPDVEFGRIAAQTAKQVIVQRVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDR +F + GEIISG VKR+E GN I+D+G ++ ++ ++E I RE +RPGDR+K Sbjct: 124 AERDRIVADFAMRQGEIISGVVKRMEKGNAIIDMGRAEAILPKEEMIPREAIRPGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ +VRR RGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+ Sbjct: 184 HLKEVRRVPRGPQLFLSRTSPELLMKLFAQEVPEIANGMIEIMGAARDPGLRAKLAVRSN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVGMRG+RVQ V+ EL+ E++DIVVWSP+ A+FVINAL PA V+ +++DE+ Sbjct: 244 EPRVDPVGACVGMRGNRVQTVINELKGERVDIVVWSPEPASFVINALSPAEVSSIIVDEN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V EQLSLAIGR GQNVRLASQLTGWTI+I+TE+E R+++ Q FM Sbjct: 304 THSMDVVVDPEQLSLAIGRGGQNVRLASQLTGWTINILTEDEARAKREEEDARFRQQFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE +A LLV EGF +EE+A V ++E+ IEG DEE E++ RAR+ L I Sbjct: 364 DLGIDEDLATLLVNEGFTSIEEVAYVPVAEMLEIEGLDEELVTELRRRARDVLLNKAIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L ++ G+D + L GI T E LA +VD+L Sbjct: 424 EEQVVLSEPAEDLLALEGMDKGLAHLLASKGITTAESLAELAVDELCEL----------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 + ++ +++I+ AR W Sbjct: 473 ------VDIEPERAKALILKARAP--WF 492 >gi|227327826|ref|ZP_03831850.1| transcription elongation factor NusA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 509 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 205/524 (39%), Positives = 317/524 (60%), Gaps = 32/524 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L +PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDD 507 >gi|94497164|ref|ZP_01303736.1| NusA antitermination factor [Sphingomonas sp. SKA58] gi|94423269|gb|EAT08298.1| NusA antitermination factor [Sphingomonas sp. SKA58] Length = 522 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 277/519 (53%), Positives = 380/519 (73%), Gaps = 7/519 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ EL+ IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P++GD+ Sbjct: 5 ISANKAELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK + IG + DPLP +D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVETVEDYFKQVDLKQGQKLKKDAVIGDFIVDPLPAIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY E+KD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQYEEYKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S + +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++ + A +RDPGSRAK+ V Sbjct: 185 IRSVVLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVTVEELAGIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L + Sbjct: 425 AAAREERQALGVDDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELIAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 K E G LS+ G ++Q +I+ AR W E+E Sbjct: 485 KSETTEDKGGILSAYGLNEEQGNEIIMAARAH--WFEEE 521 >gi|330813317|ref|YP_004357556.1| transcription termination protein NusA [Candidatus Pelagibacter sp. IMCC9063] gi|327486412|gb|AEA80817.1| transcription termination protein NusA [Candidatus Pelagibacter sp. IMCC9063] Length = 514 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 263/505 (52%), Positives = 366/505 (72%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL++IADAVA EKSI +D+VL+ M +I+KAA++ YG ++I V I+ TG I L R Sbjct: 7 DSTELIRIADAVADEKSISKDLVLTSMESAIEKAAKTRYGNENEIYVVIDRATGKIELGR 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L+VVE+V N +I L A +++ I +V++ LPP+DFGR+A Q+AKQVI ++R+ Sbjct: 67 KLKVVEKVMNTHSEIGLGEALEKNSEAKIDDIVNEELPPVDFGRIAAQTAKQVISHQIRD 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDRQ+ EFKDKVGEI+SG VKR EYGNVIVDL S+ +IRR+E I RENL+ GDR+K+ Sbjct: 127 AERDRQFEEFKDKVGEILSGIVKRSEYGNVIVDLQKSEAIIRREELIPRENLKNGDRIKA 186 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y YDVRRE +GPQ+ LSR HPQF+ KLFH EVPEIY G + +K+V+RDPGSRAK+ V S Sbjct: 187 YCYDVRRESKGPQIFLSRAHPQFLAKLFHQEVPEIYEGTIGIKSVARDPGSRAKICVQSK 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DSSIDPVGACVGMRGSRVQA+V EL+ EKIDI+ W+ D+++ V +AL PA V KV++ ED Sbjct: 247 DSSIDPVGACVGMRGSRVQAIVNELQGEKIDIINWTEDASSLVKSALSPAEVMKVIIAED 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 RIEV++ ++ LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F + T+ ++ Sbjct: 307 DRRIEVVIDEDNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQTEFKDNTEKLVK 366 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++ +D +A LLVAEGF + +A + E IEGFDEET+ E+Q RA+EY++ + Sbjct: 367 SLEIDTTMAQLLVAEGFPTINAIANASLPEFLKIEGFDEETSTELQNRAKEYIQEEAEEV 426 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 KK++ELG+ ++L + G+ + + LGE+ IKT++D A + D+L+G + G EKF Sbjct: 427 SKKVKELGIEDDLATHKGLSLGMLLILGEDNIKTLKDFAELATDELIGGYDEIKGKREKF 486 Query: 485 DGFLSSLGTPKDQVESMIIHARYKM 509 DG L + + +I+ AR K+ Sbjct: 487 DGILEEFDISRKDADDLIMRARKKV 511 >gi|119774097|ref|YP_926837.1| transcription elongation factor NusA [Shewanella amazonensis SB2B] gi|119766597|gb|ABL99167.1| NusA antitermination factor [Shewanella amazonensis SB2B] Length = 499 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 207/515 (40%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F DK GEII+G VK+ +VIVDLGN +DGV+ +++ I+RE+ RPGD Sbjct: 122 VREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P+ +++LF +EVPEI + ++QV +RDPGSRAK+A Sbjct: 182 RVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T + + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM +++VDE A +L EGF +EE+A V ++E+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SEEL ++ G+D + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498 >gi|227112574|ref|ZP_03826230.1| transcription elongation factor NusA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 509 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 204/524 (38%), Positives = 316/524 (60%), Gaps = 32/524 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + +E+L +PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESRGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDD 507 >gi|253686985|ref|YP_003016175.1| NusA antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753563|gb|ACT11639.1| NusA antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 509 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 205/524 (39%), Positives = 317/524 (60%), Gaps = 32/524 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ D S+D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDSSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q +I+ AR + W + Sbjct: 482 DIE-----------------GLNDEQAGELIMAAR-NICWFGDD 507 >gi|515637|gb|AAA20049.1| transcription factor [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 500 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 316/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMR +RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRRARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +D L Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGVDRDMAFKLAARGVCTLEDLAQQGIDHLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++II AR + W E Sbjct: 477 ------------GLTDEKAGALIIAAR-NICWFGDE 499 >gi|91228266|ref|ZP_01262202.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01] gi|254229307|ref|ZP_04922724.1| transcription termination factor NusA domain protein [Vibrio sp. Ex25] gi|262393381|ref|YP_003285235.1| transcription termination protein NusA [Vibrio sp. Ex25] gi|269966859|ref|ZP_06180932.1| N utilization substance protein A [Vibrio alginolyticus 40B] gi|91188143|gb|EAS74445.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01] gi|151938115|gb|EDN56956.1| transcription termination factor NusA domain protein [Vibrio sp. Ex25] gi|262336975|gb|ACY50770.1| transcription termination protein NusA [Vibrio sp. Ex25] gi|269828526|gb|EEZ82787.1| N utilization substance protein A [Vibrio alginolyticus 40B] Length = 495 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 323/511 (63%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R Sbjct: 2 SKEILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++VEN T +ISL+ A+ D SI++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDDVENPTKEISLEAAQYEDDSIELGDYVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEDIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + Sbjct: 362 YLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELIEELRGRAKDALTTIALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGEE 494 >gi|170727895|ref|YP_001761921.1| transcription elongation factor NusA [Shewanella woodyi ATCC 51908] gi|169813242|gb|ACA87826.1| NusA antitermination factor [Shewanella woodyi ATCC 51908] Length = 499 Score = 590 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 201/515 (39%), Positives = 317/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV+I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVQIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ DP I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDTGEPLENPFSEITLEAAQFEDPEIQLGDYIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN +D V+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQVVDQFRDKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++ Sbjct: 242 VKSNDKRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMSPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKIVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+ VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ + Sbjct: 362 LFVSALEVDEDFAQVLADEGFTSLEEVAYVPESELMEIDGFDEEIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAFVLASKGVITLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGEE 498 >gi|330830889|ref|YP_004393841.1| transcription elongation factor NusA [Aeromonas veronii B565] gi|328806025|gb|AEB51224.1| transcription elongation factor NusA [Aeromonas veronii B565] Length = 500 Score = 590 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 314/515 (60%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WVVIADQAAMENPYAEITLEAAQIDQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV Sbjct: 182 VRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++ Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRIMNL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L Sbjct: 362 FTSTLDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + SEEL ++ G+ ++ AL G+ T+EDLA +DDL Sbjct: 422 LAKEESFDGVEPSEELLNLNGLSRELAYALAGRGVGTLEDLAEQGIDDLADIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +I+ AR + W +E+ Sbjct: 475 ----------GLTAEKAGELIMAAR-NICWFGEEQ 498 >gi|28899231|ref|NP_798836.1| transcription elongation factor NusA [Vibrio parahaemolyticus RIMD 2210633] gi|153838305|ref|ZP_01990972.1| transcription elongation factor NusA [Vibrio parahaemolyticus AQ3810] gi|260362206|ref|ZP_05775190.1| transcription termination factor NusA [Vibrio parahaemolyticus K5030] gi|260879074|ref|ZP_05891429.1| transcription termination factor NusA [Vibrio parahaemolyticus AN-5034] gi|260897745|ref|ZP_05906241.1| transcription termination factor NusA [Vibrio parahaemolyticus Peru-466] gi|260900801|ref|ZP_05909196.1| transcription termination factor NusA [Vibrio parahaemolyticus AQ4037] gi|28807455|dbj|BAC60720.1| N utilization substance protein A [Vibrio parahaemolyticus RIMD 2210633] gi|149748294|gb|EDM59153.1| transcription elongation factor NusA [Vibrio parahaemolyticus AQ3810] gi|308088968|gb|EFO38663.1| transcription termination factor NusA [Vibrio parahaemolyticus Peru-466] gi|308089567|gb|EFO39262.1| transcription termination factor NusA [Vibrio parahaemolyticus AN-5034] gi|308108198|gb|EFO45738.1| transcription termination factor NusA [Vibrio parahaemolyticus AQ4037] gi|308111470|gb|EFO49010.1| transcription termination factor NusA [Vibrio parahaemolyticus K5030] gi|328474233|gb|EGF45038.1| transcription elongation factor NusA [Vibrio parahaemolyticus 10329] Length = 495 Score = 590 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 201/511 (39%), Positives = 322/511 (63%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R Sbjct: 2 SKEILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++VE+ T +ISL+ A+ D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDQVESPTKEISLEAAQYEDDSVELGDYVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLEELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + Sbjct: 362 YLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELVEELRGRAKDALTTIALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +++L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGLEPADDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGEE 494 >gi|149375756|ref|ZP_01893524.1| N utilization substance protein A [Marinobacter algicola DG893] gi|149359881|gb|EDM48337.1| N utilization substance protein A [Marinobacter algicola DG893] Length = 497 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 211/514 (41%), Positives = 325/514 (63%), Gaps = 23/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 E+L + ++V+ EK +++DV+ + ++ AA+ Y DIRV I+ TG+ FR Sbjct: 2 SKEILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYDDEEADIRVSIDRRTGEYETFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV+ V +++++ A D D S+ G + + + FGR+ Q+AKQ+I QKV Sbjct: 62 RWLVVDNDAVPALGTELTMQEAEDIDKSLQPGDTHEEKVESVAFGRIGAQAAKQIIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDR Sbjct: 122 REAERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREHLIPRETFRMGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 182 VRSLLQEIRTDHRGPQLILSRTDPQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+ Sbjct: 242 KTNDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE +++++N + Sbjct: 302 DEDRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYNSLLEH 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE A +L+ EGF +EE+A + + E+ +I+GFDEET E++ RA++ L Sbjct: 362 FTGNLDVDEEFAGVLIEEGFTSIEEVAYIPMEEMLAIDGFDEETVTELRRRAKDALLNQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G+D + L GI+TMEDLA SVDDLL Sbjct: 422 LASEEALEGAEPAEDLLAMDGMDRGLAFKLAGMGIRTMEDLAEQSVDDLLDIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 ----------GMEEERAGQLIMAARAP--WFEDQ 496 >gi|260775410|ref|ZP_05884307.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC BAA-450] gi|260608591|gb|EEX34756.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC BAA-450] Length = 495 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 322/511 (63%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 2 SKEILAVAEAVSNEKGVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ T +ISL+ A+ D +I+IG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVESPTKEISLEAAQFDDETIEIGDYVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETIVLDLGNNAEAVILRDDQLPRENHRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYRVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ Sbjct: 302 AHAMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA++ L + + Sbjct: 362 YLDIEEDFAQLLVEEGFSSLEEVAYVPVNELLEVDGLDEDLVEELRNRAKDALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W ++ Sbjct: 472 -------GLTEEYAGELIMAAR-NICWFGED 494 >gi|322831213|ref|YP_004211240.1| NusA antitermination factor [Rahnella sp. Y9602] gi|321166414|gb|ADW72113.1| NusA antitermination factor [Rahnella sp. Y9602] Length = 502 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 200/517 (38%), Positives = 315/517 (60%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALSTATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I+L+ A+ DPSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTQPTREITLEAAQYEDPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V ++ +DLG N++ VI R++ + REN R GDR++ Sbjct: 122 ERAMVVDQFREQQGEIVTGVVKKVNRDSIALDLGSNAEAVILREDMLPRENFRSGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRNEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 302 KCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRGDDKWELNVMTADDLQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + + +DE A +LV EGF+ +EELA V ++E+ I+G DE+T ++ RA+E L Sbjct: 362 AIDTFTKYLAIDEDFATVLVEEGFSTLEELAYVPVNELLEIDGLDEDTVDALRERAKEAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + + +++L ++ G++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQEESLGDKKPADDLLNLAGLERSMAFKLAAQGVCTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 479 --------------GLTDEQAGELIMAAR-NICWFGD 500 >gi|253991503|ref|YP_003042859.1| transcription elongation factor NusA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638381|emb|CAR67003.1| n utilization substance protein a (nusa protein) (l factor) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782953|emb|CAQ86118.1| n utilization substance protein a (nusa protein) (l factor) [Photorhabdus asymbiotica] Length = 502 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 316/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR +P I +G D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARFEEPEITLGSYTEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E Q + + Sbjct: 302 KCTMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L Sbjct: 362 SIDIFTKHLDIDEEFATVLVEEGFSTLEELAYVPINELLEIEGLDEETIEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLSDKQPTEELLNLTGMNRTLAFDLAACGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNDEKAGELIMAAR-NICWFGDD 501 >gi|254507512|ref|ZP_05119646.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16] gi|219549582|gb|EED26573.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16] Length = 495 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 201/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQAAIDAFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGED 494 >gi|117619535|ref|YP_857795.1| transcription elongation factor NusA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560942|gb|ABK37890.1| transcription elongation protein NusA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 500 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 314/515 (60%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WVVIADQAAMENPYAEITLEAAQIEQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV Sbjct: 182 IRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++ Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRILTL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L Sbjct: 362 FTSTLDIDDDFASLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + SEEL ++ G+ ++ AL GI T+EDLA +DDL Sbjct: 422 LAKEESFEGVEPSEELLNLNGLGREMAYALAARGIGTLEDLAEQGIDDLADIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +I+ AR + W +E+ Sbjct: 475 ----------GLTAEKAGELIMAAR-NICWFGEEQ 498 >gi|311695959|gb|ADP98832.1| transcription elongation factor NusA [marine bacterium HP15] Length = 497 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 209/514 (40%), Positives = 326/514 (63%), Gaps = 23/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ +TG+ FR Sbjct: 2 SKEILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFEDEEADIRVSIDRKTGEYETFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV+ V +++L+ A + DP++ G + + + FGR+ Q+AKQ+I QKV Sbjct: 62 RWLVVDNDAVPALGTELTLQEAEEIDPALKPGDIHEEKIESEAFGRIGAQAAKQIIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDR Sbjct: 122 REAERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREFLIPRETFRMGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 182 VRSLLLEIRTDHRGPQLILSRTSPQMLIELFRIEVPEIAEDLIEIRGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+ Sbjct: 242 KTNDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE ++++++ + Sbjct: 302 DEDRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYSRLVEH 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L Sbjct: 362 FTGNLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L + G+D + L G++TMEDLA SV DLL Sbjct: 422 LASEEALEGAEPAEDLLGMDGMDRSLAFKLAGMGVRTMEDLAEQSVGDLLEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 ----------GMDEERAGQLIMTARAP--WFEDQ 496 >gi|229525295|ref|ZP_04414700.1| transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] gi|229338876|gb|EEO03893.1| transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] Length = 495 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFDAASFDDDSVQLGDYIEDQIDSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|296533459|ref|ZP_06896041.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC 49957] gi|296266214|gb|EFH12257.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC 49957] Length = 525 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 283/522 (54%), Positives = 370/522 (70%), Gaps = 18/522 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELLQ+A+AVA EK I+RD VL M +IQKA R+ YG DIR I+ TG++ L R Sbjct: 9 RPELLQVAEAVAREKMIERDEVLEAMEQAIQKAGRAKYGHEKDIRAVIDRRTGEVKLSRW 68 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVVE+ VEN QI ++A+ P I +G + DPLPP+DFGR+A Q+AKQVI+Q+VR Sbjct: 69 TEVVEQEPVENEATQIPHRIAQKIKPGIAVGEFIVDPLPPIDFGRIAAQTAKQVIVQRVR 128 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER +Q+ E+KD+VGEII+G VKR EYGN++VDLG ++ ++RRDETI RE R GDRV+ Sbjct: 129 EVERSKQFNEYKDRVGEIINGVVKRTEYGNLMVDLGRAEALLRRDETIPREAFRNGDRVR 188 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S Sbjct: 189 AYIYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAVIS 248 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D+ TFV+NAL PA V+KVV+D+ Sbjct: 249 RDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSADNPTFVVNALAPAEVSKVVMDD 308 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D R+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT F+ Sbjct: 309 DSKRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTGLFV 368 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +A++VD++IA LLV EGF +EEL V ++A IEGFDE A E++ R++ +L+ D Sbjct: 369 EALDVDDVIAGLLVTEGFGSIEELMEVPDEDLAEIEGFDENVAAELKRRSQAFLDRRDQE 428 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 L +K + LGV + + G + V LGE G+KT++DLA + D+L+ Sbjct: 429 LDEKRQALGVEDAVAEAGGFTPAMLVTLGEKGVKTLDDLADLAADELIE----------- 477 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 L + +D ++I+ AR W +E D A Sbjct: 478 ---ILGTEAVDEDTANAIIMAAREH--WFAQEGNQDGGAAQA 514 >gi|192361293|ref|YP_001980958.1| transcription elongation factor NusA [Cellvibrio japonicus Ueda107] gi|190687458|gb|ACE85136.1| N utilization substance protein A [Cellvibrio japonicus Ueda107] Length = 493 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 216/510 (42%), Positives = 331/510 (64%), Gaps = 22/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAV+ EK +D++++ + ++ A + + S I V IN TGD +R Sbjct: 2 NKEILLVADAVSNEKGVDKELIFQAIETALATATKKRFDEDSTIEVIINRTTGDYETWRS 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV + + Q +L+ A ++D S+ G V + + +FGR+A Q+AKQVI+QKVR Sbjct: 62 WDVVSDDILAELGTQFTLEEAHEKDTSLKAGDVYREKIENAEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + E++D++GE++SGTVK+V ++IVDLGN ++GV+ RD+ I RE R GDRV Sbjct: 122 EAERAQMVDEYRDRMGELVSGTVKKVTRDSIIVDLGNNAEGVLPRDQLIGREIFRMGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+LLSR+ PQ +V+LF +EVPEI ++++K +RDPG RAK+AV Sbjct: 182 RALLLDVRTEARGPQLLLSRSAPQMLVELFKIEVPEIAEEVIEIKGAARDPGLRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA + +V+D Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQFVINAMSPAEIESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +E L++AIGR GQNVRLA +LTGW I++++ + ++ + Q F Sbjct: 302 EDARSMDLAVNEENLAMAIGRGGQNVRLACELTGWNINVMSVADWQAKQEAESGSYIQIF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M A++VDE IA +LV EGF +EE+A V + E+ +I+GFD++ A E++ RA++ L + Sbjct: 362 MSALDVDEDIAGVLVEEGFTTLEEVAYVPLEEMLAIDGFDQDIAEELRARAKDALLTQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ + +E+L S+ G+DS++ + L GI TMEDLA S+DDLL Sbjct: 422 ASEERLEGVAPAEDLLSMEGMDSQLAIRLASRGIVTMEDLAEQSIDDLLDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + + ++I+ AR W Sbjct: 474 ---------GVDETRAAALIMKAREP--WF 492 >gi|74316716|ref|YP_314456.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259] gi|74056211|gb|AAZ96651.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 492 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 211/509 (41%), Positives = 327/509 (64%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADA+A EK++D++VV + ++ A + + SD+RV I+ ETGD FR Sbjct: 4 EMLMLADALAREKNVDKEVVFEALEQALASATKKRFKEESDVRVAIDRETGDYESFRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+E+ QI L A+D+ P I+IG + +PL ++FGR+ Q+AKQVI+QK+R+A Sbjct: 64 VVTEAELESEGYQILLVDAQDKIPDIEIGDYIEEPLENVEFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G VKR++ GN I++ G +G + RD+ I RENLR GDRV++Y Sbjct: 124 EREQIISDFLARKEHLVNGVVKRIDRGNAIIESGRVEGFLHRDQMIPRENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQV+LSRT P+F++KLF +EVPEI G++++KA +RDPG RAK+AV S D Sbjct: 184 LLRIDRGNRGPQVVLSRTAPEFIMKLFELEVPEIEEGLLEIKAAARDPGLRAKIAVVSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G C+G+RGSRV +V EL E++DI+ WS D A +VINAL PA V+ +V+DED Sbjct: 244 PRIDPIGTCIGLRGSRVTSVTNELAGERVDIIHWSADPAQYVINALAPAEVSSIVVDEDT 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL++AIGR GQNVRLAS+LTGW ++I++ E + + + Q F++ Sbjct: 304 HSMDVVVDEEQLAMAIGRGGQNVRLASELTGWELNIMSREAAEEKQSSESQKTLQLFIEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE E++ RAR L I + Sbjct: 364 LDVDEEVAQILVDEGFSTLEEVAYVPLNEMLEIEAFDEALVNELRNRARNALLTAAIVGE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ + +L S+ G+D++ L G+ T EDLA +VD+L + Sbjct: 424 EQVEAS--AGDLLSLDGMDAETARLLASKGVHTTEDLAELAVDELTEMA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 ++ + +I+ AR W + Sbjct: 471 ------AMDAERAKQLIMAARAP--WFAQ 491 >gi|330447378|ref|ZP_08311027.1| transcription termination/antitermination L factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491569|dbj|GAA05524.1| transcription termination/antitermination L factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 495 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 199/511 (38%), Positives = 312/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVTIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VEEV T +I+L+ A+ +P + G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVEEVTQPTLEITLEAAQFENPELVEGDYVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+I+G VK+V VI+DLGN ++ VI+RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +SE+ +EG DE+ +++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFTTLEEIAYVPVSELMEVEGLDEDLIEQLRSRAKAALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ L GI T+EDLA DDL Sbjct: 422 EESLDGAEPAEDLLGLEGLERELAFKLAAKGICTLEDLADQGTDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR + W E Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494 >gi|120556256|ref|YP_960607.1| transcription elongation factor NusA [Marinobacter aquaeolei VT8] gi|120326105|gb|ABM20420.1| NusA antitermination factor [Marinobacter aquaeolei VT8] Length = 497 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 203/514 (39%), Positives = 326/514 (63%), Gaps = 23/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR Sbjct: 2 SKEILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYEDEEADIRVAIDRRTGEYETFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV+ V +++L+ A + D ++ G + + + + FGR+ Q+AKQ+I QKV Sbjct: 62 RWLVVDNDAVPALGTELTLQEAEEIDTNLKPGDMYEEKVESVAFGRIGAQAAKQIIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++D++GE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDR Sbjct: 122 REAERMKIVDSYRDRIGELVSGTVKKVTRDNVIVDLGGNAEALLPREHLIPRETFRMGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + ++R + RGPQ++LSRT Q +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 182 VRALLLEIRTDHRGPQLILSRTDSQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV EL E++DIV++ + A VINA+ PA V +V+ Sbjct: 242 KTNDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLYDDNPAQLVINAMAPAEVASIVM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V ++ L+ AIGR GQNVRLA++LTGWT++++TEEE +++++N + Sbjct: 302 DEDRHTMDVAVAEDNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEYNRLLEH 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L Sbjct: 362 FTAHLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + ++L ++ G+D + L G++TMEDLA S+D+LL Sbjct: 422 LASEEALEGAEPEDDLLNMDGMDRALAFKLAGMGVRTMEDLAEQSIDELLEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 ----------GMDEERAGQLIMTARAP--WFEDQ 496 >gi|315634096|ref|ZP_07889385.1| N utilization substance A [Aggregatibacter segnis ATCC 33393] gi|315477346|gb|EFU68089.1| N utilization substance A [Aggregatibacter segnis ATCC 33393] Length = 498 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 200/515 (38%), Positives = 317/515 (61%), Gaps = 24/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINTKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N T +I+L+ AR DP+ IG V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVEEVNNPTKEITLEAARFEDPNAQIGDYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGD 180 ER + +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGD Sbjct: 122 ERSKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+A Sbjct: 182 RVRGVLYKVSPESKGAQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + ++ Sbjct: 302 VDEDKHAMDIAVEEANLAQAIGRNGQNVRLATQLTGWVLNVMTTQDLNAKHQAEDDKVLN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEG 419 F+ A+ +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + Sbjct: 362 LFIDALEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITA 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ +++ + + L ++ G++ I L E I T+EDLA VDDL Sbjct: 422 KALAEEEALKKAKIEDRLLNLEGMNRHIAFKLAEKQITTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W + Sbjct: 477 ------------GLSAEQAADLIMAAR-NICWFTE 498 >gi|323491074|ref|ZP_08096266.1| transcription elongation factor NusA [Vibrio brasiliensis LMG 20546] gi|323314738|gb|EGA67810.1| transcription elongation factor NusA [Vibrio brasiliensis LMG 20546] Length = 495 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 319/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ Sbjct: 302 ANAMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIEGFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR + W E+ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGDEE 495 >gi|260914257|ref|ZP_05920730.1| N utilization substance A [Pasteurella dagmatis ATCC 43325] gi|260631890|gb|EEX50068.1| N utilization substance A [Pasteurella dagmatis ATCC 43325] Length = 494 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 199/511 (38%), Positives = 320/511 (62%), Gaps = 20/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WLVVEEVTNPTKEITLEAAQFEDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ + GEI++GTVK+V N+++DLG ++ V+ R++ + REN RPGDRV+ Sbjct: 122 ERNKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVMLREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYKVSPENKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ + FM Sbjct: 302 SHSMDIAVESANLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNQKHQAEDNKVLKLFMN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 + +DE AH+L+ EGF+ +EELA V ++E+ SI+G DE+ E+Q RA+ + + Sbjct: 362 TLEIDEEFAHILIEEGFSTLEELAYVSVNELTSIDGLEDEDLVEELQTRAKNAITAAALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ I + L E I T+E+LA VDDL Sbjct: 422 EEEALKQAHIEDRLLALDGMNRHIALKLAEKNITTLEELAEQGVDDLADIE--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q I+ AR + W + Sbjct: 473 --------DLTAEQAADFIMAAR-NICWFSE 494 >gi|153826517|ref|ZP_01979184.1| N utilization substance protein A [Vibrio cholerae MZO-2] gi|149739697|gb|EDM53904.1| N utilization substance protein A [Vibrio cholerae MZO-2] Length = 495 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDDSVQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|15640662|ref|NP_230291.1| transcription elongation factor NusA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121728410|ref|ZP_01681438.1| N utilization substance protein A [Vibrio cholerae V52] gi|147674353|ref|YP_001216136.1| transcription elongation factor NusA [Vibrio cholerae O395] gi|153801994|ref|ZP_01956580.1| N utilization substance protein A [Vibrio cholerae MZO-3] gi|153818700|ref|ZP_01971367.1| N utilization substance protein A [Vibrio cholerae NCTC 8457] gi|153822531|ref|ZP_01975198.1| N utilization substance protein A [Vibrio cholerae B33] gi|153829178|ref|ZP_01981845.1| N utilization substance protein A [Vibrio cholerae 623-39] gi|227080823|ref|YP_002809374.1| N utilization substance protein A [Vibrio cholerae M66-2] gi|229505736|ref|ZP_04395246.1| transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229509231|ref|ZP_04398716.1| transcription termination protein NusA [Vibrio cholerae B33] gi|229519560|ref|ZP_04409003.1| transcription termination protein NusA [Vibrio cholerae RC9] gi|229608847|ref|YP_002879495.1| transcription elongation factor NusA [Vibrio cholerae MJ-1236] gi|254850876|ref|ZP_05240226.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744141|ref|ZP_05418094.1| transcription termination protein NusA [Vibrio cholera CIRS 101] gi|262156117|ref|ZP_06029236.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1] gi|262169941|ref|ZP_06037631.1| transcription termination protein NusA [Vibrio cholerae RC27] gi|297580768|ref|ZP_06942694.1| N utilization substance protein A [Vibrio cholerae RC385] gi|298500758|ref|ZP_07010561.1| transcription elongation factor NusA [Vibrio cholerae MAK 757] gi|9655078|gb|AAF93808.1| N utilization substance protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629344|gb|EAX61776.1| N utilization substance protein A [Vibrio cholerae V52] gi|124122453|gb|EAY41196.1| N utilization substance protein A [Vibrio cholerae MZO-3] gi|126510780|gb|EAZ73374.1| N utilization substance protein A [Vibrio cholerae NCTC 8457] gi|126519949|gb|EAZ77172.1| N utilization substance protein A [Vibrio cholerae B33] gi|146316236|gb|ABQ20775.1| N utilization substance protein A [Vibrio cholerae O395] gi|148875367|gb|EDL73502.1| N utilization substance protein A [Vibrio cholerae 623-39] gi|227008711|gb|ACP04923.1| N utilization substance protein A [Vibrio cholerae M66-2] gi|227012467|gb|ACP08677.1| N utilization substance protein A [Vibrio cholerae O395] gi|229344249|gb|EEO09224.1| transcription termination protein NusA [Vibrio cholerae RC9] gi|229353803|gb|EEO18739.1| transcription termination protein NusA [Vibrio cholerae B33] gi|229357959|gb|EEO22876.1| transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229371502|gb|ACQ61925.1| transcription termination protein NusA [Vibrio cholerae MJ-1236] gi|254846581|gb|EET24995.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738081|gb|EET93473.1| transcription termination protein NusA [Vibrio cholera CIRS 101] gi|262021675|gb|EEY40386.1| transcription termination protein NusA [Vibrio cholerae RC27] gi|262030153|gb|EEY48798.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1] gi|297535184|gb|EFH74019.1| N utilization substance protein A [Vibrio cholerae RC385] gi|297540539|gb|EFH76597.1| transcription elongation factor NusA [Vibrio cholerae MAK 757] Length = 495 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|261212247|ref|ZP_05926533.1| transcription termination protein NusA [Vibrio sp. RC341] gi|260838855|gb|EEX65506.1| transcription termination protein NusA [Vibrio sp. RC341] Length = 495 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 318/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAANFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLTELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 THSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|213852790|ref|ZP_03382322.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 485 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 194/474 (40%), Positives = 305/474 (64%), Gaps = 6/474 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADI 475 >gi|163802303|ref|ZP_02196197.1| transcription elongation factor NusA [Vibrio sp. AND4] gi|159173832|gb|EDP58646.1| transcription elongation factor NusA [Vibrio sp. AND4] Length = 495 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 2 SKEILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VEN T +IS++ A+ D +G V D +P + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVENPTKEISIEAAQYEDADAQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V V++DLGN ++ VI RD+ + RENLRPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENLRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D DPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRTDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + Sbjct: 362 YLDIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELIEELRTRAKDALTTIALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESFDGLEPAEDLLGLEGLEREMAFKLAAKGVVTLEDLADQGIDDLEG------------ 469 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + G +++ +I+ AR + W +E Sbjct: 470 -----TEGLTEERAGELIMAAR-NICWFGEE 494 >gi|121587876|ref|ZP_01677633.1| N utilization substance protein A [Vibrio cholerae 2740-80] gi|153215844|ref|ZP_01950176.1| N utilization substance protein A [Vibrio cholerae 1587] gi|229512904|ref|ZP_04402371.1| transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229520933|ref|ZP_04410355.1| transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229530447|ref|ZP_04419835.1| transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|121547912|gb|EAX57996.1| N utilization substance protein A [Vibrio cholerae 2740-80] gi|124114561|gb|EAY33381.1| N utilization substance protein A [Vibrio cholerae 1587] gi|229332220|gb|EEN97708.1| transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229342166|gb|EEO07162.1| transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229350153|gb|EEO15106.1| transcription termination protein NusA [Vibrio cholerae TMA 21] gi|327483444|gb|AEA77851.1| Transcription termination protein NusA [Vibrio cholerae LMA3894-4] Length = 495 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDESVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|260771174|ref|ZP_05880101.1| transcription termination protein NusA [Vibrio furnissii CIP 102972] gi|260613771|gb|EEX38963.1| transcription termination protein NusA [Vibrio furnissii CIP 102972] gi|315179220|gb|ADT86134.1| transcription elongation factor NusA [Vibrio furnissii NCTC 11218] Length = 495 Score = 587 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 320/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ + FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFNTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EVEN T +ISL+ A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVENPTKEISLEAAVYDDESVKLGDFIEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V VI+DLG N++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLITGVVKKVNRDTVILDLGSNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELCGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHAMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V + E+ ++G DE+ E++ RA++ L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPVHELLEVDGLDEDLVEELRTRAKDALTTIALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 422 EESYEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGED 494 >gi|258624683|ref|ZP_05719617.1| N utilization substance protein A [Vibrio mimicus VM603] gi|258582970|gb|EEW07785.1| N utilization substance protein A [Vibrio mimicus VM603] Length = 495 Score = 587 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLVELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 THSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|312885214|ref|ZP_07744893.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC BAA-2122] gi|309367154|gb|EFP94727.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC BAA-2122] Length = 495 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 318/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V +++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPDMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ ++ + FM+ Sbjct: 302 TNTMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDDLHKKHAEESQAAIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DEE E++ RA+ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEELVEELRNRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +++L + G++ ++ L G+ T+EDLA +DD+ Sbjct: 422 EESFEGVEPADDLLGLEGLEREMAFKLAARGVATLEDLAEQGIDDIESIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR + W +++ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGEDE 495 >gi|37528349|ref|NP_931694.1| transcription elongation factor NusA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787787|emb|CAE16902.1| N utilization substance protein A (nusA protein) (L factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 502 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 316/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR +P ID+G D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARFEEPEIDLGSYTEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 302 KCTMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ IEG DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIEGLDEETIEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLSDKQPTEELLNLTGMNRTLAFDLAARGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNDEKTGELIMAAR-NICWFGDD 501 >gi|89072574|ref|ZP_01159146.1| transcription elongation factor NusA [Photobacterium sp. SKA34] gi|89051678|gb|EAR57131.1| transcription elongation factor NusA [Photobacterium sp. SKA34] Length = 495 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 314/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + ++RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIEVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VEEV T +I+L+ A+ DP+I G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVEEVTQPTLEITLEAAQFEDPTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+I+G VK+V VI+DLG N++ VI+RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGSNAEAVIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLCELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +SE+ ++G DEET +++ RA+ L + + Sbjct: 362 HLDIDEDFATVLVEEGFTTLEEIAYVPLSELMDVDGLDEETIDQLRSRAKAALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ GI T+EDLA DDL Sbjct: 422 EETLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR + W E Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494 >gi|262163944|ref|ZP_06031683.1| transcription termination protein NusA [Vibrio mimicus VM223] gi|262027472|gb|EEY46138.1| transcription termination protein NusA [Vibrio mimicus VM223] Length = 495 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 201/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLFKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 THSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEPDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|261253851|ref|ZP_05946424.1| transcription termination protein NusA [Vibrio orientalis CIP 102891] gi|260937242|gb|EEX93231.1| transcription termination protein NusA [Vibrio orientalis CIP 102891] Length = 495 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 321/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEMEIDVRVEIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ T +ISL+ A+ DP +++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEVVEVVESPTKEISLEAAQYEDPELNVGDFVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ Sbjct: 302 TNTMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIESFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ L G+ T+EDLA +DD+ G Sbjct: 422 EESFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGED 494 >gi|88860547|ref|ZP_01135185.1| transcription elongation factor NusA [Pseudoalteromonas tunicata D2] gi|88817745|gb|EAR27562.1| transcription elongation factor NusA [Pseudoalteromonas tunicata D2] Length = 498 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 190/514 (36%), Positives = 318/514 (61%), Gaps = 23/514 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TG FR Sbjct: 3 KEILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGDIDVRVCIDRKTGAYDTFRRW 62 Query: 67 EVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++VE+ +EN +I+++ A DP+ +G + + + + F R+ Q+AKQVI+QKV Sbjct: 63 QIVEDREGGLENPYREITIEAAVYDDPNAKLGDFIEEQIESIKFDRITTQTAKQVIVQKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER ++D+ GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGDR Sbjct: 123 REAERALIVEAYQDQEGEMVTGVVKKASREAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 183 IRGLLYSVKPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV TEL E+IDIV++ + A FVINA+ PA V +V+ Sbjct: 243 KSNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLYDDNPAQFVINAMAPAEVASIVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ + Q++ + + Sbjct: 303 DEDSRSMDIAVESDNLAQAIGRNGQNVRLASQLTGWELNVMTVDDMNKKNQEESGKAIKV 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A LL+ EGF+ +EE+A V SE I+G DE+T E++ RA+ L Sbjct: 363 FTEGLDIDEDFAQLLIDEGFSTLEEVAYVPTSEFLEIDGIDEDTVEELRARAKASLTTQA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + + +L ++ G++ + L G+ T+EDLA +D+L+ +E Sbjct: 423 LASEESLEGATPAADLLALEGLERHLAFVLASKGVVTLEDLAEQGIDELVDITE------ 476 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 477 -----------LSSEKAGELIMAAR-NICWFGDE 498 >gi|262189773|ref|ZP_06048124.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93] gi|262034350|gb|EEY52739.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93] Length = 504 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 202/508 (39%), Positives = 316/508 (62%), Gaps = 18/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + + +I+ AR +G + Sbjct: 472 -------GLTEQRAGELIMAARNIVGLV 492 >gi|220934178|ref|YP_002513077.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219995488|gb|ACL72090.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 501 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 217/515 (42%), Positives = 323/515 (62%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK ++++V+ + ++ A R +G D+RV I+ ETGD FR Sbjct: 2 NKEILMVVDAVSNEKGVEKEVIFEAIEAALGSATRKKHGGEIDVRVSIHRETGDYETFRR 61 Query: 66 LEVVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV+ E E+ Q L A P I +G + +P+ +DFGR+A Q+AKQVI+QK Sbjct: 62 WLVVDDEDPEFESPERQKLLSYAHQTHPDIQVGEYIEEPMESVDFGRIAAQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + EF+ +VGE++ G VKR E V +DLG N++ I R+E I RE +RP D Sbjct: 122 VREAERAKVVEEFRHRVGELVMGVVKRTERSGVFLDLGGNAEAFIPREEMIPRETVRPND 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ +VR E RGPQ+ +SRT P+F++++F +EVPE+ G++ + +RDPG RAK+A Sbjct: 182 RLRGYLKEVRSEPRGPQLFVSRTAPEFLIEMFKLEVPEVGQGLIDIMGAARDPGLRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+DS +DPVGACVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V Sbjct: 242 VRSNDSRLDPVGACVGMRGSRVQSVSNELAGERVDIILWDDNPAQFVINAMSPAEVLSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E+LS AIGR GQN+RLASQLTGW ++++ E + + + + E + Sbjct: 302 MDEDRHSMDIAVAEEKLSQAIGRGGQNIRLASQLTGWELNVMNEAQAAEKSEAEAAELQR 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ ++VDE +A +LV EGF+ +EE+A V SEI IE FDEE E++ RAR+ L Sbjct: 362 MFMENLDVDEEVAAILVQEGFSSIEEVAYVPTSEIMQIEEFDEEIVEELRARARDALLTK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I +++ +E+L ++ G+D + L GI TMEDLA +VDDL+ S Sbjct: 422 AIATEEQ-GGGEPAEDLLNMEGMDRDLAFKLAAKGICTMEDLAEQAVDDLVEIS------ 474 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR W ++ Sbjct: 475 -----------GLDAEKAGELIMTARAP--WFAED 496 >gi|258620312|ref|ZP_05715350.1| N utilization substance protein A [Vibrio mimicus VM573] gi|262172282|ref|ZP_06039960.1| transcription termination protein NusA [Vibrio mimicus MB-451] gi|262401660|ref|ZP_06078226.1| transcription termination protein NusA [Vibrio sp. RC586] gi|258587191|gb|EEW11902.1| N utilization substance protein A [Vibrio mimicus VM573] gi|261893358|gb|EEY39344.1| transcription termination protein NusA [Vibrio mimicus MB-451] gi|262352077|gb|EEZ01207.1| transcription termination protein NusA [Vibrio sp. RC586] Length = 495 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 201/511 (39%), Positives = 318/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLFKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 THSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + Sbjct: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 422 EESFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -------GLTEQRAGELIMAAR-NICWFGED 494 >gi|251792720|ref|YP_003007446.1| transcription elongation factor NusA [Aggregatibacter aphrophilus NJ8700] gi|247534113|gb|ACS97359.1| transcription elongation factor NusA [Aggregatibacter aphrophilus NJ8700] Length = 498 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 199/515 (38%), Positives = 316/515 (61%), Gaps = 24/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYEVDVRVTINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V + T +I+L+ AR +P I +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WAVVENVMSPTKEITLEAARFENPDIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGD 180 ER + +F+ K G+I++ TVK+ ++I+D+ ++ V+ R++ + REN RPGD Sbjct: 122 ERSKIVDQFRAKEGQIVTATVKKSNRDSIILDVNGEDGNKAEAVMLREDMLPRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+A Sbjct: 182 RVRGVLYKVNPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V Sbjct: 242 VKSNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE S Q + N+ Sbjct: 302 VDEDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELSEKHQAEDNKVLN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEG 419 F+ A+ +DE A LL+ EGF+ +EELA V + E+ +I+G D + E+Q RA+ + Sbjct: 362 LFIDALEIDEEFAQLLIDEGFSTLEELAYVPVRELTAIDGLEDGDLVEELQTRAKNAITA 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 422 KALAEEEALKKAQIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLTDIEE---- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W + Sbjct: 478 -------------LSAEQAADLIMAAR-NICWFTE 498 >gi|117919478|ref|YP_868670.1| transcription elongation factor NusA [Shewanella sp. ANA-3] gi|117611810|gb|ABK47264.1| NusA antitermination factor [Shewanella sp. ANA-3] Length = 499 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 205/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFINALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498 >gi|27365056|ref|NP_760584.1| transcription elongation factor NusA [Vibrio vulnificus CMCP6] gi|37680893|ref|NP_935502.1| transcription elongation factor NusA [Vibrio vulnificus YJ016] gi|320155440|ref|YP_004187819.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O] gi|27361202|gb|AAO10111.1| Transcription termination protein NusA [Vibrio vulnificus CMCP6] gi|37199642|dbj|BAC95473.1| n utilization substance protein A [Vibrio vulnificus YJ016] gi|319930752|gb|ADV85616.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O] Length = 495 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 318/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 2 SKEILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EVEN T +IS + A D S+ +G + + + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVENPTKEISFEAANYDDESVQLGDFIEEEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DRRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ ++ FM+ Sbjct: 302 AHSMDIAVEAGNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIDNFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ +EG DE+ E++ RA++ L I + Sbjct: 362 YLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVEGLDEDLIEELRSRAKDALTTIALAR 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ ++EDLA +DDL G Sbjct: 422 EESFEGVEPAEDLLNLEGLEREMAFKLAAKGVASLEDLADQGIDDLEGID---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -------GLTEERAGQLIMAAR-NICWFGEE 494 >gi|120597899|ref|YP_962473.1| transcription elongation factor NusA [Shewanella sp. W3-18-1] gi|146293929|ref|YP_001184353.1| transcription elongation factor NusA [Shewanella putrefaciens CN-32] gi|120557992|gb|ABM23919.1| NusA antitermination factor [Shewanella sp. W3-18-1] gi|145565619|gb|ABP76554.1| NusA antitermination factor [Shewanella putrefaciens CN-32] Length = 499 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 204/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFINSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + S+EL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGTLIMAAR-NICWFGEE 498 >gi|113969369|ref|YP_733162.1| transcription elongation factor NusA [Shewanella sp. MR-4] gi|114046596|ref|YP_737146.1| transcription elongation factor NusA [Shewanella sp. MR-7] gi|113884053|gb|ABI38105.1| NusA antitermination factor [Shewanella sp. MR-4] gi|113888038|gb|ABI42089.1| NusA antitermination factor [Shewanella sp. MR-7] Length = 499 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 205/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDNGVALENPYREITLEAARFENPEIQPGDFIEDEIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498 >gi|226940848|ref|YP_002795922.1| transcription elongation factor NusA [Laribacter hongkongensis HLHK9] gi|226715775|gb|ACO74913.1| NusA [Laribacter hongkongensis HLHK9] Length = 497 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 208/514 (40%), Positives = 322/514 (62%), Gaps = 28/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-----MSDIRVEINPETGDISL 62 E+L + DA+A EK++ +D+V + ++ A + D+RV I+ TG Sbjct: 4 EILLLVDALAREKNVSKDIVFGALELALASATKKKISQDTNQDEIDVRVSIDRHTGAYET 63 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VVE+ E + QI++ A + + +G + +P+ ++FGR+ Q+AKQVI+Q Sbjct: 64 FRRWTVVEDNDHEFPSRQIAMSDAAEHEVEAVVGTIKEEPVEAIEFGRIGAQTAKQVILQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+R+AER++ +F D+ +++SGT+KR+E GNVI+DLG + ++ R++ I +ENLR GD Sbjct: 124 KIRDAEREQVLNDFLDRNEKLVSGTIKRIERGNVIIDLGKLEALLPREQQIPKENLRVGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ V R RGPQ++LSR PQF+ +LF EVPEI +G++++K +RD GSRAK+A Sbjct: 184 RVKAYLLRVDRMGRGPQIILSRIAPQFITELFRQEVPEIDDGMLEIKGCARDAGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D +DP G C+GMRGSRVQAV EL E++DIV+W+ D +VINAL PA V +++ Sbjct: 244 VKANDPRLDPQGTCIGMRGSRVQAVTNELGGERVDIVLWAGDIVQYVINALSPAEVQRIL 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++V+V ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + + Q Sbjct: 304 IDEDKHAMDVVVDEDQLALAIGRGGQNVRLASELTGWVLNIMTVAEAEEKHEAEDAAMKQ 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM A++VD+ +A +L +EGF +EE+A V + E+ I FD ET E++ RARE L Sbjct: 364 LFMDALDVDQDVADVLASEGFTTLEEIAYVPLEEMLQISYFDAETVNELRSRAREALLTQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I ++K+ V + L +PG+ + V L ENG+ T +DLA +VD+L + Sbjct: 424 AIASEEKMN--SVEDALRELPGMTQDVLVKLAENGVTTRDDLADLAVDELADMT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +D+ ++I+ AR W E+ Sbjct: 476 -----------NITEDEARALIMKAREH--WFEQ 496 >gi|270158099|ref|ZP_06186756.1| transcription elongation protein NusA [Legionella longbeachae D-4968] gi|289163636|ref|YP_003453774.1| Transcription elongation protein nusA [Legionella longbeachae NSW150] gi|269990124|gb|EEZ96378.1| transcription elongation protein NusA [Legionella longbeachae D-4968] gi|288856809|emb|CBJ10620.1| Transcription elongation protein nusA [Legionella longbeachae NSW150] Length = 492 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 203/510 (39%), Positives = 332/510 (65%), Gaps = 23/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+A++ E+ + +DV++ + +++ A R ++G +R++++P TGD FR Sbjct: 2 SKELLLVAEALSNERGVSKDVIILAIQAALESATRKIFGLDIGVRIKLDPRTGDYETFRY 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV +++E+ Q++L+ A+ R+PS+++G + + +P ++FGR+ Q+A+QVI+QKVR Sbjct: 62 WDVVTDDDLEDPDRQLTLEQAKTRNPSVNVGDRIEESIPSIEFGRIEAQAARQVIMQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV Sbjct: 122 EAERELVIDQFRGKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRTEMLPHEMFRPNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI +++VKA +RDPG+RAK+AV Sbjct: 182 RAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIEVKAAARDPGNRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA ++ +V+D Sbjct: 242 TNDGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADISSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E ++ ++ + F Sbjct: 302 EDTHTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNLEESSKIIKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA + L + + Sbjct: 362 TSALEIDEEIATLLVAHGFSSLEEIAYVPKEELLAIEEFDDEIVEELRNRANDNLLTMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K + + L ++ G+ + L GI +MEDLA SVD+LL Sbjct: 422 SSNKDLSG-QPDDSLLTMEGMTQDLANQLATRGITSMEDLAEQSVDELLELD-------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D+ ++I+ AR W Sbjct: 473 ---------GMTEDKAAALIMKAREP--WF 491 >gi|15602625|ref|NP_245697.1| transcription elongation factor NusA [Pasteurella multocida subsp. multocida str. Pm70] gi|12721058|gb|AAK02844.1| NusA [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 320/511 (62%), Gaps = 20/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR Sbjct: 2 SKELLLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WLVVDEVTNPTKEITLEAAQFDDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ + GEI++GTVK+V N+++DLG ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S+ Sbjct: 182 VLYKVSPESKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA VT +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVTSIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QLT WT++++T +E + Q + N+ + FM Sbjct: 302 SHAMDIAVEPANLAQAIGRNGQNVRLATQLTSWTLNVMTTDELNQKHQAEDNKVLKLFMN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE AH+L+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALEIDEDFAHILIEEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQARAKNAITAAALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ I + L E I T+E+LA VDDL Sbjct: 422 EEEALKQAHIEDRLLALEGMNRHIALKLAEKQITTLEELAEQGVDDLADIE--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q I+ AR + W + Sbjct: 473 --------DLTAEQAADFIMAAR-NICWFSE 494 >gi|323495468|ref|ZP_08100543.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326] gi|323319465|gb|EGA72401.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326] Length = 495 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 196/511 (38%), Positives = 318/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+VEN T +ISL+ A+ + +++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEDVENPTKEISLEAAKFENEELELGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V V++DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRDTVVLDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ Sbjct: 302 AHAMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQAAIEGFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ L G+ T+EDLA +DD+ Sbjct: 422 EESFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGEE 494 >gi|257094534|ref|YP_003168175.1| transcription elongation factor NusA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047058|gb|ACV36246.1| NusA antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 490 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 330/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + D +A EK++ +D+V + ++ A + +++RV ++ ETGD FR E Sbjct: 4 EILLLVDVLAREKNVTKDIVFGALEMALASATKKRVHDNANVRVVVDRETGDFETFRRWE 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + + QI L A+++DP ++IG + + L P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VVADGDFLDEEQQIPLSDAQEQDPEVEIGDFLEESLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++GT+KR+E GN I++ G + V+ RD+ I RENLR GDRVK+Y Sbjct: 124 EREQILNDFLARKEHLVTGTIKRMERGNAIIETGKIEAVLPRDQMIPRENLRIGDRVKAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F+++LF +EVPE+ +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRAARGPQLILSRTAPEFIIRLFALEVPEVDDGLLEIKAAARDPGMRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRG RV AV EL E++DIV+WS D A FVI AL PA V+ +++DE+ Sbjct: 244 QRIDPIGTCVGMRGMRVTAVTNELAGERVDIVLWSADPAQFVIGALAPAEVSSIIVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L++AIGR GQNVRLAS++TGWTI+++TEEE + + FM+ Sbjct: 304 HSMDVVVDEQNLAIAIGRGGQNVRLASEMTGWTINLMTEEESKTLVEAEAAAIRVLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A++L+ EGF+ +EE+A V + E+ IE FDE T E++ RAR L I + Sbjct: 364 LDVDEELANILIEEGFSTLEEVAYVPLHEMIEIESFDEATVQELRERARNVLLTDAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +KI E V+E++ ++ G+D + L +GIKT +DLA +VD+L + Sbjct: 424 EKIGE--VAEDMLNLEGMDKVLAGKLASSGIKTRDDLADLAVDELTEIT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + + +I AR W E Sbjct: 471 ------GIDTPRAKQLITTARAH--WFE 490 >gi|167625060|ref|YP_001675354.1| transcription elongation factor NusA [Shewanella halifaxensis HAW-EB4] gi|167355082|gb|ABZ77695.1| NusA antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 499 Score = 584 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIDSVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESVKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++GRA+ + Sbjct: 362 LFIQALDVDEDFAQLLSDEGFTSLEEIAYVPESELLEIDGFDEDIVESLRGRAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|15599939|ref|NP_253433.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAO1] gi|107103844|ref|ZP_01367762.1| hypothetical protein PaerPA_01004915 [Pseudomonas aeruginosa PACS2] gi|116052892|ref|YP_793209.1| transcription elongation factor NusA [Pseudomonas aeruginosa UCBPP-PA14] gi|152989172|ref|YP_001350787.1| transcription elongation factor NusA [Pseudomonas aeruginosa PA7] gi|218893840|ref|YP_002442709.1| transcription elongation factor NusA [Pseudomonas aeruginosa LESB58] gi|254238519|ref|ZP_04931842.1| N utilization substance protein A [Pseudomonas aeruginosa C3719] gi|254244353|ref|ZP_04937675.1| N utilization substance protein A [Pseudomonas aeruginosa 2192] gi|296391572|ref|ZP_06881047.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAb1] gi|313109726|ref|ZP_07795666.1| N utilization substance protein A [Pseudomonas aeruginosa 39016] gi|9951007|gb|AAG08131.1|AE004888_6 N utilization substance protein A [Pseudomonas aeruginosa PAO1] gi|115588113|gb|ABJ14128.1| N utilization substance protein A [Pseudomonas aeruginosa UCBPP-PA14] gi|126170450|gb|EAZ55961.1| N utilization substance protein A [Pseudomonas aeruginosa C3719] gi|126197731|gb|EAZ61794.1| N utilization substance protein A [Pseudomonas aeruginosa 2192] gi|150964330|gb|ABR86355.1| N utilization substance protein A [Pseudomonas aeruginosa PA7] gi|218774068|emb|CAW29884.1| N utilization substance protein A [Pseudomonas aeruginosa LESB58] gi|310882168|gb|EFQ40762.1| N utilization substance protein A [Pseudomonas aeruginosa 39016] Length = 493 Score = 584 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 209/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN G FR Sbjct: 2 SKEVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVEINRHNGSYETFRR 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E+ ++ +I+++ +++ P +G V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WHVVADEDYQDPATEITVEDVQEQKPGAKVGEVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++KVGEIISGTVK+V NVIVDLGN ++ ++ RD+ I RE R G RV Sbjct: 122 EAERAQVVDAYREKVGEIISGTVKKVTRDNVIVDLGNNAEALLARDQIIPRETFRVGTRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI ++ V A +RDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLVLSRTAPEMLIELFRIEVPEIAEQLIDVMAAARDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F Sbjct: 302 EDTHTMDIAVAEDNLAQAIGRSGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDILQRF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I Sbjct: 362 VDELDVDEELAQVLVEEGFTTLEEIAYVPMEEMLSIDGFDEDIVNELRSRAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+ ++ + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAQPAEDLLSLDGMSKELALDLALRGVTTREDLAEQSIDDLLDID-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +I+ AR W E Sbjct: 474 ---------GMDEERAGKLIMAARAH--WFE 493 >gi|226946308|ref|YP_002801381.1| transcription elongation factor NusA [Azotobacter vinelandii DJ] gi|226721235|gb|ACO80406.1| Transcription termination factor NusA [Azotobacter vinelandii DJ] Length = 493 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 218/511 (42%), Positives = 330/511 (64%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + Y D+RV+IN ++G FR Sbjct: 2 SKEVLLVVESVSNEKGVPAGVIFEALELALATATKKRYEDDVDLRVQINRQSGAYDTFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +EN +++L AR+R P + +G V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDDLLENPAAELTLDEARERKPDVRVGDVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G RV Sbjct: 122 EAERAQVVDVYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGARV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P +++LF +EVPEI G+++VKA SRDPGSRAK+AV Sbjct: 182 RALLKEIRPENRGPQLILSRTAPGMLIELFRIEVPEIAEGLIEVKAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V + L+ AIGR GQNVRLASQLTGWT++++TE + ++ + + + F Sbjct: 302 EDAHAMDVAVADDNLAQAIGRGGQNVRLASQLTGWTLNVMTEGDIQAKQRAETGDILRSF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 VEELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLAIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ E +E+L S+ G+D ++ V L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLVEAHPAEDLLSLEGMDKELAVELAMRGVITREDLAEQSIDDLLDID-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +I+ AR W E Sbjct: 474 ---------GMDEERAGKLIMAARAH--WFE 493 >gi|194289950|ref|YP_002005857.1| transcription elongation factor nusa [Cupriavidus taiwanensis LMG 19424] gi|193223785|emb|CAQ69792.1| transcription termination/antitermination L factor [Cupriavidus taiwanensis LMG 19424] Length = 491 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 210/509 (41%), Positives = 333/509 (65%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+ +PSI++G + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDELGLQEPDKQILLFEAREENPSIELGDYIEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPDFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +S+I+ AR W Sbjct: 472 -------GVSEEEAKSLIMKAREH--WFN 491 >gi|90581550|ref|ZP_01237343.1| transcription elongation factor NusA [Vibrio angustum S14] gi|90437312|gb|EAS62510.1| transcription elongation factor NusA [Vibrio angustum S14] Length = 495 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 199/511 (38%), Positives = 311/511 (60%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VEEV T +I+L+ A+ D +I G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVEEVTQPTLEITLEAAQFEDSTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+I+G VK+V VI+DLGN ++ VI+RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +SE+ ++G DEE +++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFTTLEEIAYVPVSELMDVDGLDEEIIDQLRSRAKAALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ GI T+EDLA DDL Sbjct: 422 EETLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR + W E Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494 >gi|157962879|ref|YP_001502913.1| transcription elongation factor NusA [Shewanella pealeana ATCC 700345] gi|157847879|gb|ABV88378.1| NusA antitermination factor [Shewanella pealeana ATCC 700345] Length = 499 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 200/515 (38%), Positives = 316/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGTNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVADMKAKHQAESAKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++ RA+ + Sbjct: 362 LFIQALDVDEEFAQLLSDEGFTSLEEIAYVPASELLEIDGFDEDIVESLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|198282694|ref|YP_002219015.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667138|ref|YP_002424886.1| transcription termination factor NusA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247215|gb|ACH82808.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519351|gb|ACK79937.1| transcription termination factor NusA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 493 Score = 583 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 225/508 (44%), Positives = 333/508 (65%), Gaps = 22/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +ADAVA+EK +DR+V+ + S+ A++ YG I V+++ +TGD RL E Sbjct: 4 ELLYLADAVAHEKDVDREVIFLALEASLVSASKKKYGQDWHIAVDVDRKTGDYVTRRLWE 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + QI L AR P + G + + LPP++FGR+A Q+AKQVI+QKVR+ Sbjct: 64 VVADDVADYDVDQQIRLSDARKTRPEAEPGDYLEEVLPPVEFGRIAAQTAKQVIVQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDR +F + G+I+SG VKR+E GN IVD+G ++ ++ ++E + RE +RPGDRV++ Sbjct: 124 AERDRIVSDFAIRKGDIVSGLVKRMEKGNAIVDMGRAEAILPKEEMMPREAIRPGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ DVRR QRGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+ Sbjct: 184 HLQDVRRVQRGPQLFLSRTSPELLIKLFAQEVPEIGNGMIEIMGAARDPGLRAKLAVRSN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DPVGACVG+RG+RVQ V+ EL+ E+IDIV+W+ D A++VINAL PA V+ +V+DE+ Sbjct: 244 DPRVDPVGACVGLRGNRVQTVINELKGERIDIVIWAADPASYVINALSPAEVSSIVVDEN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E LS AIGR GQNVRLA+QLTGWTI+I+TEEE R+++ + F+Q Sbjct: 304 THSMDVVVGPEHLSQAIGRGGQNVRLATQLTGWTINILTEEEAQAKREEEESTFLNHFIQ 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A LLV+EGF +EE+A V ++E+ I+G DE E++ RAR+ L I Sbjct: 364 DLGVDEDLAALLVSEGFTSIEEVAYVPVAEMMEIDGLDENLVGELRRRARDVLLNKAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L S+ G+D + L G+ T EDLA + +L Sbjct: 424 EEQVALSEPAEDLLSLKGMDKGLAHLLASKGVVTSEDLAELAASELCEM----------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 +G +++ +++I+ AR W Sbjct: 473 ------VGVDEERAKALILEARAP--WF 492 >gi|53804603|ref|YP_113778.1| transcription elongation factor NusA [Methylococcus capsulatus str. Bath] gi|53758364|gb|AAU92655.1| N utilization substance protein A [Methylococcus capsulatus str. Bath] Length = 499 Score = 583 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 213/516 (41%), Positives = 322/516 (62%), Gaps = 27/516 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + D V+ EK I+++V+ S + ++++ A + D+RV I+ +TGD FR Sbjct: 3 NKEILLVVDVVSNEKDIEKEVIFSAIEEALRTATIKRHDGRYDVRVSIDRKTGDYETFRR 62 Query: 66 LEVVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +VVE VE +ISL+ AR P I +G V +P ++FGR+A Q+AKQVI Sbjct: 63 WQVVEPREEFGNGVEFPEREISLEEARKTHPGITVGEFVEEPFDSIEFGRIAAQTAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR 177 +QKVREAER + ++ +VGE+++G +KR+E GNV +DLG N + I RDE I RE++R Sbjct: 123 VQKVREAERRKIADAYQSRVGELVTGVIKRIERGNVFLDLGGNVEAFIPRDEMIPRESVR 182 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ + VR + RGPQ+ +SRT P+ ++ LF +EVPE+ ++++K +RDPG RA Sbjct: 183 SGDRLRGILSAVRPDARGPQLFVSRTAPELLIALFRLEVPEVSENLIEIKGAARDPGVRA 242 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S+D +DPVGACVGMRGSRVQAV EL E+IDI++W+ + A FV+NA+ PA + Sbjct: 243 KVAVKSNDPRLDPVGACVGMRGSRVQAVSNELAGERIDIILWNENEAQFVVNAMSPAEIV 302 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V E LS AIGR GQNVRLAS+LTGWT+++++ + Q++ Sbjct: 303 SIVVDEDRHSMDIAVADENLSQAIGRGGQNVRLASELTGWTLNVMSSTQADAKTQEETRR 362 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q F++ + VD +A +LV EGF+ VEELA V E+ IE FDE+ E++ RAR+ L Sbjct: 363 LIQTFVEQLGVDGEVAEILVREGFSSVEELAYVPTKELLEIEEFDEDIVEELRNRARDAL 422 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++K+ E+ SE+L + G+D ++ L +GI+T+EDLA +V DLL Sbjct: 423 LIKAIASEEKLEEVEPSEDLLELEGMDRELAYRLARHGIRTLEDLADQAVPDLLDIE--- 479 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +++ +I+ AR W Sbjct: 480 --------------DMEEEKAAELIMKAR--ASWFS 499 >gi|329896244|ref|ZP_08271422.1| Transcription termination protein NusA [gamma proteobacterium IMCC3088] gi|328921915|gb|EGG29282.1| Transcription termination protein NusA [gamma proteobacterium IMCC3088] Length = 496 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 206/512 (40%), Positives = 328/512 (64%), Gaps = 22/512 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK + D++ + ++ A + Y SDI V IN +TGD R Sbjct: 3 KEILLVAEAVSNEKGVSEDIIFEAIELALATATKKRYDEDSDIHVTINRKTGDYVTVRRW 62 Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + E Q++ + A ++DPS+ G V + + + FGR+A Q+AKQVI+Q+VRE Sbjct: 63 LVVPDDELALLGTQLTTEEAIEKDPSLVPGDVFEETVENVGFGRIAAQTAKQVIVQRVRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + +++ +VGE+++G+VK+V N+IVDLGN ++G++ R + RE R DR++ Sbjct: 123 AERAQIVDQYRGRVGELVAGSVKKVTRDNIIVDLGNNAEGLLPRGNLVGRETFRVNDRLR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++ E RGPQ++LSR+ + +++LF +EVPEI G++Q++A +RDPGSRAK+AV + Sbjct: 183 AILTEISTEIRGPQLILSRSCSEMLIELFRIEVPEIAEGVIQIRAAARDPGSRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DE Sbjct: 243 NDQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ EE ++ + + Q F+ Sbjct: 303 DTHTMDVAVSEDNLAQAIGRSGQNVRLASELTGWMINVMSTEEAQEKQEAEVGQVLQLFV 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE + E++ RA++ L + I Sbjct: 363 ERLDVDEDVAEVLVEEGFTTLEEVAYVPLEEMMAIEGFDEEISEELRARAKDALLTMAIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ +++L ++ G+D + L GI TMEDLA VDDL+ E Sbjct: 423 SEEQLGANEPADDLLNMEGMDRHLAFILASRGIVTMEDLAEQGVDDLMEIPE-------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ S+I+ AR W +E Sbjct: 475 ---------MDEERAGSLIMTARAP--WFAEE 495 >gi|319427306|gb|ADV55380.1| NusA antitermination factor [Shewanella putrefaciens 200] Length = 499 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFINSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + S+EL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGTLIMAAR-NICWFGEE 498 >gi|52425500|ref|YP_088637.1| transcription elongation factor NusA [Mannheimia succiniciproducens MBEL55E] gi|52307552|gb|AAU38052.1| NusA protein [Mannheimia succiniciproducens MBEL55E] Length = 501 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 206/518 (39%), Positives = 316/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVAINQKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV N T +I+L+ A+ DP I +G V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WLVVDEVVNPTKEITLEAAQFEDPDIQLGDYVEDQIDSVAFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-------GNSDGVIRRDETISRENLRP 178 ER++ +F+ + G+I++GTVK+V ++I+DL ++ VI R++ + REN RP Sbjct: 122 ERNKVVEQFRSEEGKIVTGTVKKVTRDSIILDLTGNKEDPAKAEAVITREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRV+ +Y V E +G Q+ ++R P + +LF +EVPEI ++++K SRD G RAK Sbjct: 182 GDRVRGVLYKVNPESKGAQLFVTRAKPVMLEELFRLEVPEIGEELIEIKGASRDAGLRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V Sbjct: 242 IAVKSNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVNS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V +E L+ AIGR GQNVRLA+QLTGWT++++T EE Q + N+ Sbjct: 302 IVVDEDNHSMDIAVEQENLAQAIGRNGQNVRLATQLTGWTLNVMTTEELQQKHQAEDNKV 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYL 417 FM ++ +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA++ L Sbjct: 362 LNLFMTSLELDEDFAQLLIDEGFSSLEELAYVPVSELTAIDGLEDEDLVEELQNRAKDAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + ++ +++ V + L ++ G++ I L E IKT+E+LA VDDL E Sbjct: 422 TAKAVAEEEALKQAEVEDRLLNLEGMERHIAFRLAEKNIKTLEELAEQGVDDLADIEE-- 479 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 480 ---------------LSAEKAADLIMAAR-NICWFGDE 501 >gi|241662813|ref|YP_002981173.1| transcription elongation factor NusA [Ralstonia pickettii 12D] gi|309782264|ref|ZP_07676992.1| transcription termination/antitermination protein NusA [Ralstonia sp. 5_7_47FAA] gi|240864840|gb|ACS62501.1| NusA antitermination factor [Ralstonia pickettii 12D] gi|308918957|gb|EFP64626.1| transcription termination/antitermination protein NusA [Ralstonia sp. 5_7_47FAA] Length = 491 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L A++++P +D+ V + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQNPDLDVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EERVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|254787150|ref|YP_003074579.1| transcription elongation factor NusA [Teredinibacter turnerae T7901] gi|237684737|gb|ACR12001.1| transcription elongation / termination protein, N utilization substance A [Teredinibacter turnerae T7901] Length = 496 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 209/514 (40%), Positives = 329/514 (64%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L +ADAV+ EK +DRDV+ + ++ A + Y SDI V I+ TGD R Sbjct: 2 KKEILLVADAVSNEKGVDRDVIFQAIELALATATKKRYDEDSDIEVLIDRRTGDYVTKRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV++ + Q +L+ A ++D ++ G V + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WLVVDDDTLAELGTQFTLEEAHEKDTALVAGDVYEEVVENVEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++ +VGE++SG+VK+V N+IVDLGN ++G++ R+E + RE R DRV Sbjct: 122 EAERAQIVDQYRSRVGELVSGSVKKVTRDNIIVDLGNNAEGLLPREELVGREVFRMNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+ LSR + +++LF +EVPEI ++ +K +RDPGSRAK+AV Sbjct: 182 RALLMDVRPEARGPQLYLSRACSEMLIELFKIEVPEIAEEVIALKGAARDPGSRAKIAVS 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL +E+IDIV+W + A FVINA+ PA + +VLD Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIVLWDDNPAQFVINAMAPAEIESIVLD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +++ V ++ L+ AIGR GQNVRLAS+LTGW I++++ E+ + + ++ + F Sbjct: 302 EETHAMDLAVDEDNLAQAIGRGGQNVRLASELTGWEINVMSVEQWNEKQAQEAGSSKEVF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+A++VDE +A +LV EGF +EE+A V + E +IEGFDE+ A E++ RA++ L + Sbjct: 362 MEALDVDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEDIANELRSRAKDALLTQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 +++ +E+L ++ G+D+++ L G+ MEDLA SVD+L+ Sbjct: 422 ATEEQTVGQEPAEDLLTMEGMDNELAFVLASRGVTCMEDLAEQSVDELMEID-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ ++I+ AR W + Sbjct: 474 ---------GMDEERAAALIMKAREP--WFADGE 496 >gi|269103408|ref|ZP_06156105.1| transcription termination protein NusA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163306|gb|EEZ41802.1| transcription termination protein NusA [Photobacterium damselae subsp. damselae CIP 102761] Length = 494 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 20/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKYEAEIDVRVTIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + V+EV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVDEVTQPTLEITLEAAQFEDETVELGDFVEDEIQSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V VIVDLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVAQFVDNEGDLITGVVKKVNRDAVIVDLGNNAEAVIGRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P + +LF +EVPEI ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPAMLSELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E F + Sbjct: 302 SHTMDIAVEKANLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHQEEAQESIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V ++E+ +EG +EET E++ RA+E L I + Sbjct: 362 YLDIDEDFASVLVTEGFTTLEEIAYVPVNELLEVEGLNEETIDELRNRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ L GI T+EDLA DDL+ Sbjct: 422 EESL-DAEPAEDLLALEGLERELAFKLAAKGILTLEDLADQGTDDLIDIE---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W E Sbjct: 471 -------GVDEAKAGELIMAAR-NICWFGDE 493 >gi|157376522|ref|YP_001475122.1| transcription elongation factor NusA [Shewanella sediminis HAW-EB3] gi|157318896|gb|ABV37994.1| NusA antitermination factor [Shewanella sediminis HAW-EB3] Length = 499 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 315/516 (61%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ +TG FR Sbjct: 2 NKEILLVTEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVEIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDTGEPLENPFSEITLEAAQFEEPEIQLGEYIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +FKDK GE+I+G VK+ +V+VDLG N+D V+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFKDKEGELITGVVKKSNRESVVVDLGSNADAVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ ++ VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLFAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++ VDE A +L EGF +EE+A V SE+ I+GFDE+ ++ RA+ + Sbjct: 362 LFVTSLEVDEDFAQVLADEGFTSLEEVAYVPASELMDIDGFDEDIVETLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAFVFASKGVITLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499 >gi|293390259|ref|ZP_06634593.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950793|gb|EFE00912.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 498 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 198/515 (38%), Positives = 315/515 (61%), Gaps = 24/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WVVVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGD 180 ER + +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGD Sbjct: 122 ERSKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+A Sbjct: 182 RVRGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ Sbjct: 302 VDEDKHSMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEG 419 F+ + +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + Sbjct: 362 LFIDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITA 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 422 QALAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDLADIEE---- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W + Sbjct: 478 -------------LGAEQAADLIMAAR-NICWFTE 498 >gi|187478885|ref|YP_786909.1| transcription elongation factor NusA [Bordetella avium 197N] gi|115423471|emb|CAJ50005.1| transcription elongation protein (N utilization substance protein) [Bordetella avium 197N] Length = 492 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 310/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P +++G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSDAHEISPDLEVGDFIEEPLEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISGT+KR++ G+ IV+ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDYIVETGKIEARLPRTEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQENERVSLRATFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGLEEIAYVPMQELLEIEAFDEDTINELRVRARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ + L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGVTPDLAAKLAERNVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GMSEQEASDLIMRARAH--WFDEE 492 >gi|294142061|ref|YP_003558039.1| N utilization substance protein A [Shewanella violacea DSS12] gi|293328530|dbj|BAJ03261.1| N utilization substance protein A [Shewanella violacea DSS12] Length = 499 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 319/516 (61%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VVE+ +EN +I+L+ A+ + + +G V D + + F R+ Q+AKQVI+QK Sbjct: 62 WQVVEDTGEPLENPYGEITLEAAQYENAELQVGDFVEDDMESVTFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I+G VK+ +V+VDLG N+D V+ +++ ISREN RPGD Sbjct: 122 VREAERAQVVEQFQDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++ ++ VR E RG Q+ ++RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RIRALLFSVRPEARGAQLFMTRTQPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPADVASIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + Sbjct: 302 VDEDTHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWVLNVMTVEDLQAKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ + Sbjct: 362 LFVSSLDVDEDFAQILADEGFTSLEEVAYVPSAELMEIDGFDEDTVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLEKHLAFVFASKGVITLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499 >gi|119898399|ref|YP_933612.1| transcription elongation factor NusA [Azoarcus sp. BH72] gi|119670812|emb|CAL94725.1| putative N utilization substance protein A [Azoarcus sp. BH72] Length = 491 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 212/509 (41%), Positives = 336/509 (66%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRIHDEADVRVSIDRETGDYESFRRWI 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ D I +G + +PL P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VMPDEEVTNDEAEMGIIDARELDSKIQLGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++ Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRLEAVLPRDQQIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLKIDRGARGPQLILSRTAPEFLMKLFELEVPEIEDGLLEIKACARDPGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VW+ D A FVI AL+PA V +V+DE+ Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIGGEQIDIIVWAADPAQFVIAALQPAEVVSIVVDEEA 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + +++ + FM+ Sbjct: 304 HAMDVVVDESNLAIAIGRNGQNVKLASELTGWTINLMSEQESAEKSEQEKSGIRSLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF+ +EE+A V ++E+ IE FDEET E++ RAR L I + Sbjct: 364 LDVDEEVADILIDEGFSSLEEIAYVPLAEMLEIEAFDEETVTELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ VS++L + G+D + L GI+T +DLA +VD+L+ + Sbjct: 424 EQLEN--VSDDLLGLDGMDKSLAAKLAGKGIRTRDDLADLAVDELVEMA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +++I AR W E+ Sbjct: 471 ------GLDVEQAKALISVARAH--WFEE 491 >gi|237808991|ref|YP_002893431.1| transcription elongation factor NusA [Tolumonas auensis DSM 9187] gi|237501252|gb|ACQ93845.1| NusA antitermination factor [Tolumonas auensis DSM 9187] Length = 499 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 318/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGDIEVRVTIDRKTGDFDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VVE ++N +ISL A+ DPSI +G V + + + F R+ Q+AKQVI+QKV Sbjct: 62 WQVVEGDGIMQNPYREISLDAAQYDDPSIQLGDYVEEQVESITFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +F+D+ G I++G VK+V ++I+DLG N++GV+ R++ + RE+ R GDR Sbjct: 122 REAERAQIVEQFRDQEGTIVTGVVKKVNRDSIIMDLGSNAEGVLYREDMLPRESFRNGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK + V+ E RG Q+ +SRTHP F+ +LF +EVPEI I+++K +RDPGSRAK+AV Sbjct: 182 VKGLLAAVKPEARGSQLFISRTHPDFLKELFRIEVPEIGEEIIEIKGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++ Sbjct: 242 KTNDRRIDPVGACVGMRGARVQAVSGELAGERIDIVLWDDNPAQFVINAMAPADVASLIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVISSNLAQAIGRNGQNVRLASQLSGWELNVMTVEDMQTKHQAEKDRILTL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F QA+++D+ A LLV EGF+ VEE+A V +SE+ I+G D E E++ RA++ L Sbjct: 362 FTQALDIDDDFAELLVEEGFSTVEEIAYVPLSELQRIDGLDNEQIEELRERAKQALSTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +++L ++ G+ + L GI T+EDLA +DDL G Sbjct: 422 LAKEETLAGAKPADDLLALQGMTLDLAYELAARGIPTLEDLAEQGIDDLSGIP------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 475 ----------GMTEEKAGELIMAAR-NICWFGEQ 497 >gi|153001790|ref|YP_001367471.1| transcription elongation factor NusA [Shewanella baltica OS185] gi|160876524|ref|YP_001555840.1| transcription elongation factor NusA [Shewanella baltica OS195] gi|217972314|ref|YP_002357065.1| transcription elongation factor NusA [Shewanella baltica OS223] gi|304410266|ref|ZP_07391885.1| transcription termination factor NusA [Shewanella baltica OS183] gi|307302023|ref|ZP_07581781.1| transcription termination factor NusA [Shewanella baltica BA175] gi|151366408|gb|ABS09408.1| NusA antitermination factor [Shewanella baltica OS185] gi|160862046|gb|ABX50580.1| NusA antitermination factor [Shewanella baltica OS195] gi|217497449|gb|ACK45642.1| NusA antitermination factor [Shewanella baltica OS223] gi|304351675|gb|EFM16074.1| transcription termination factor NusA [Shewanella baltica OS183] gi|306914061|gb|EFN44482.1| transcription termination factor NusA [Shewanella baltica BA175] gi|315268718|gb|ADT95571.1| NusA antitermination factor [Shewanella baltica OS678] Length = 499 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFVNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G+D + GI T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGVEPSEELLALEGVDRHLAYVFASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|302878488|ref|YP_003847052.1| NusA antitermination factor [Gallionella capsiferriformans ES-2] gi|302581277|gb|ADL55288.1| NusA antitermination factor [Gallionella capsiferriformans ES-2] Length = 490 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 212/507 (41%), Positives = 324/507 (63%), Gaps = 23/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA++ EK++D++VV S + ++ A + + +D+RV I+ TG+ FR E Sbjct: 4 EVLLLVDALSREKNVDKEVVFSALESALASATKKRFEDEADVRVAIDRNTGEFESFRCWE 63 Query: 68 VVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+++ E I L+ A RDP+I +GG + +PL +DFGR+ Q+AKQVI QK+R+A Sbjct: 64 VMDDETFETPDLHIKLEEALKRDPAIALGGFIEEPLESVDFGRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SGTVKR+E G+ IV+ G + ++ RD+ I +EN+R GDRV+++ Sbjct: 124 EREQILADFMDRKEHLVSGTVKRLERGSAIVEFGKIEALLPRDQMIPKENMRIGDRVRAH 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQV+LSRT +VKLF +EVPEI ++++ +RDPGSRAK+AV S D Sbjct: 184 LLRVDRGPRGPQVILSRTSTDLLVKLFELEVPEIEENLLEIVGAARDPGSRAKIAVQSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRGSRVQ+V EL E++DI++WS D AT+VIN+L PA V+ +V+DED Sbjct: 244 QRIDPIGTCVGMRGSRVQSVTNELAGERVDIILWSEDPATYVINSLAPAEVSSIVVDEDR 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +E L+ AIGR GQNVRLAS++TGW ++I+T E+ ++F + FM+ Sbjct: 304 HSMDVVVEEENLAQAIGRGGQNVRLASEMTGWELNIMTVEQAQEKHDQEFVKTRAIFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGFA +EE+A V + E+ IE FDE+T E++ RAR L + + Sbjct: 364 LDVDEEVADILVQEGFATLEEVAYVPVEEMLEIETFDEDTVNELRSRARNALLNAALVSE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E G+ + L + G++ ++ L G+ T E LA VD+L+ S Sbjct: 424 EKV-EHGI-DGLLKLDGMNDELARELAVKGVTTQEQLADLDVDELVELS----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 G D ++I+ AR W Sbjct: 471 ------GLDADVANALIMAARAP--WF 489 >gi|149189795|ref|ZP_01868076.1| transcription elongation factor NusA [Vibrio shilonii AK1] gi|148836444|gb|EDL53400.1| transcription elongation factor NusA [Vibrio shilonii AK1] Length = 495 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 196/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + D+RV I+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEVE T +IS++ A+ D SI +G V + + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WMAVEEVEFPTKEISIEAAQFDDESIQVGDFVEEEIDSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++++G VK+V +I+DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGDLVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEELIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DRRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHQEEAIASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A +LV EGF+ +EE+A V ++E+ I+G +EE E++ RA++ L + + Sbjct: 362 HLDIEQDFAEMLVEEGFSTLEEVAYVPVNELLEIDGLNEELVEELRSRAKDALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EESFEGVEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR + W E+ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGDEE 495 >gi|300704337|ref|YP_003745940.1| transcription termination/antitermination l factor [Ralstonia solanacearum CFBP2957] gi|299072001|emb|CBJ43331.1| transcription termination/antitermination L factor [Ralstonia solanacearum CFBP2957] Length = 491 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKEILLFEAREQNPDVSIDDFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|24372786|ref|NP_716828.1| transcription elongation factor NusA [Shewanella oneidensis MR-1] gi|24346871|gb|AAN54273.1|AE015564_4 N utilization substance protein A [Shewanella oneidensis MR-1] Length = 499 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 205/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDNGVALENPYREITLEAARFEEPEIQPGEYIEDQIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|148976708|ref|ZP_01813395.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3] gi|145964059|gb|EDK29317.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3] Length = 495 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 202/512 (39%), Positives = 320/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VE VEN T +ISL+ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEAVEVVENPTKEISLEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V +I+DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAVASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W E+ Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495 >gi|254456337|ref|ZP_05069766.1| transcription termination factor [Candidatus Pelagibacter sp. HTCC7211] gi|207083339|gb|EDZ60765.1| transcription termination factor [Candidatus Pelagibacter sp. HTCC7211] Length = 517 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 244/507 (48%), Positives = 352/507 (69%), Gaps = 3/507 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A++LELL+IA+AVA EKSID+++++S M I KAA+S +G ++I+V I+ ++GDI +F Sbjct: 6 ADKLELLRIAEAVALEKSIDKELIISSMETGIAKAAKSKFGQDNEIKVSIDRDSGDIEIF 65 Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L V E EN +I L+ A + + +G V PLP DFGR+A Q+AKQVI Sbjct: 66 RKLIVAENPENSNTEIKLEDAIILNEINKDKAVGDEVLQPLPSFDFGRIAAQTAKQVISF 125 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVI DLG ++ +I+++E I REN++ GD Sbjct: 126 NVREAERERQYNDFIDKKDTILSGIVKRLEFGNVIADLGRTEAIIQKNEMIPRENIKAGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y YDVRRE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ SRDPGSRAK+ Sbjct: 186 RIKAYCYDVRREPRGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSSRDPGSRAKIC 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAILVSNALSPAEVQRVN 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D + +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 306 VDIERKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQVEFKEKTE 365 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ ++++ + IEG +E+TA+ + RA+E+ + Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSIDDIKDTTAENLMKIEGIEEDTAIALIERAKEFHQKD 425 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I+ELG+ + L ++ G+ + V LGE I T+ED A + D+L G + G Sbjct: 426 QEDISERIKELGLQDSLINLKGLTPGMLVTLGEQKILTLEDFADLASDELTGGYDVVKGE 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARY 507 K G+L K++ + +I+ AR Sbjct: 486 RVKIQGYLEDFALSKEEADELIMSARK 512 >gi|126664888|ref|ZP_01735872.1| transcription elongation factor NusA [Marinobacter sp. ELB17] gi|126631214|gb|EBA01828.1| transcription elongation factor NusA [Marinobacter sp. ELB17] Length = 497 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 203/514 (39%), Positives = 322/514 (62%), Gaps = 23/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 E+L + ++V+ EK +++DV+ + ++ AA+ + DIRV I+ TG+ FR Sbjct: 2 SKEILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFDDEDADIRVSIDRRTGEYDTFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV+ V +++ + A D P + G + + + + FGR+ Q+AKQ+I QKV Sbjct: 62 RWLVVDNDAVPALGTELTFQEAEDISPDLQPGDMHEERIDSVAFGRIGAQAAKQIIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + ++ +VGE++SGTVK+V NVIVDLGN ++ ++ R+ I+RE R GDR Sbjct: 122 REAERTKIVDSYRGRVGELVSGTVKKVTRDNVIVDLGNNAEALLPREHLIARETFRMGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S + ++R + RGPQ++LSR+ + +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 182 VRSLLLEIRTDHRGPQLILSRSDSKMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+ Sbjct: 242 KTNDRRIDPVGACVGMRGSRVQAVSNELNGERVDIVLWDDNPAQLVINAMAPAEVASIVM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLA++LTGWT++++TEEE ++++ + Sbjct: 302 DEDRHTMDVAVAADNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEQGRLLEH 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +L+ EGF+ +EE+A + + E+ +IEGFDEET E++ RA++ L Sbjct: 362 FTKHLDIDEEFAGVLIDEGFSSIEEVAYIPMEEMLAIEGFDEETVTELRKRAKDALLNQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ GID + L GI+TMEDLA SV DLL Sbjct: 422 LANEEALDGAEPAEDLLAMEGIDRGLAFKLAGMGIRTMEDLAEQSVGDLLEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 ----------GMNEERAGQLIMTARAP--WFEDQ 496 >gi|260771815|ref|ZP_05880733.1| transcription termination protein NusA [Vibrio metschnikovii CIP 69.14] gi|260613107|gb|EEX38308.1| transcription termination protein NusA [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 198/511 (38%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ + + + ++RV I+ +TG+ FR Sbjct: 2 SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKHEMEIEVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ T +IS A D ++ +G + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVENVEHPTKEISFDAANYDDETVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V +VIVDLGN ++ VI R++ + REN R GDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRDSVIVDLGNNAEAVILREDQLPRENFRSGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV S+ Sbjct: 182 LLFKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEEMIELKGAARDPGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESTASIEKFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++++ A +LV EGF+ +EE+A V +SE+ I+G +EE EI+ RA+E L I +T Sbjct: 362 YLDIEQDFAEMLVEEGFSTLEEIAYVPVSELLEIDGLNEEIIEEIRARAKEALTTIALTQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ L +++L + G++ + L G+ T+EDLA +DDL G Sbjct: 422 EESFEGLEPADDLLGLAGLERDMAFKLAAKGVATLEDLADQGIDDLEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -------GLTEERAGELIMAAR-NICWFGED 494 >gi|119470821|ref|ZP_01613432.1| transcription elongation factor NusA [Alteromonadales bacterium TW-7] gi|119446048|gb|EAW27327.1| transcription elongation factor NusA [Alteromonadales bacterium TW-7] Length = 499 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 191/515 (37%), Positives = 320/515 (62%), Gaps = 24/515 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR Sbjct: 3 KEILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVSIDRKTGDYDTFRRW 62 Query: 67 EVVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ E +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QK Sbjct: 63 QIAEVLEDGSLENPYSEITLEAAQVEEPDLQLGDFVEEQIDSIKFDRITTQMAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER +KD+VGE+++G VK+ ++++DLGN ++ VI RD+ + REN RPGD Sbjct: 123 VREAERALVVDAYKDQVGELVTGVVKKATRDSIVLDLGNNAEAVIYRDDMLPRENFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+A Sbjct: 183 RIRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V Sbjct: 243 VKSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMSPAEVASIV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++ Sbjct: 303 LDEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRTKNEAESDKLLN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 363 LFTENLDIDDEFATLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTK 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 423 ALKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE----- 477 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W E Sbjct: 478 ------------LSSEQAGELIMAAR-NICWFADE 499 >gi|163752374|ref|ZP_02159569.1| transcription elongation factor NusA [Shewanella benthica KT99] gi|161327746|gb|EDP98933.1| transcription elongation factor NusA [Shewanella benthica KT99] Length = 499 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 197/516 (38%), Positives = 318/516 (61%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VVE+ +EN +I+L+ A+ DP + +G V D + + F R+ Q+AKQVI+QK Sbjct: 62 WQVVEDTGEPLENPYGEITLEAAQYEDPELQVGDYVEDDMESVTFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + FKD+ GE+I+G VK+ +V+VDLG N+D V+ +++ ISREN RPGD Sbjct: 122 VREAERAQVVELFKDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++ ++ VR E RG Q+ ++RT + +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RIRALLFSVRPEARGAQLFMTRTKSEMLIELFRIEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPAEVASIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + Sbjct: 302 VDEDSHSMDIAVEADSLAQAIGRNGQNVRLAAQLSGWELNVMTVEDLQKKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++ VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ + Sbjct: 362 LFVASLEVDEDFAQVLADEGFTSLEEVAYVPAAELMEIDGFDEDTVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + G+ T+E+LA +DDL+ E Sbjct: 422 ALATEEALDGAAPSEDLLALEGLDKHLAFVFASKGVITLENLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499 >gi|238897563|ref|YP_002923242.1| transcription pausing; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465320|gb|ACQ67094.1| transcription pausing; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 494 Score = 580 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 315/511 (61%), Gaps = 21/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++R++IN +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYDQDVEVRIKINRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ V + T +I+L+ A+ +D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLAVDIVTSPTREITLEAAQFQDSQIQLGDYVEDQIESVIFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+I++G VK+ N+ +DLGN ++G+I R++ + REN+R GDR++ Sbjct: 122 ERAMLVEQFRQHQGKIVTGVVKKATRENIYLDLGNNTEGIIGREDMLPRENIRTGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDP SRAK+AV S+ Sbjct: 182 VLYDVRPEARGAQLFISRSRPEMLIELFRIEVPEIGEELIEIKAAARDPASRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDI++W + FVINA+ PA V V +DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPVQFVINAMAPAEVVSVTIDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLAS+L+GW ++++T EE Q + + F+Q Sbjct: 302 KHTMDIAVEATHLAQAIGRNGQNVRLASRLSGWELNVMTAEELQSKNQAEVDSIVHTFIQ 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N+D+ A +L+ EG + +EEL CV I E+ IEG DEET ++ RA++ L + + Sbjct: 362 HLNIDKEFAEVLIEEGLSSLEELVCVPIEELLEIEGLDEETVNALRDRAKKTLTTLALA- 420 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 + S++L ++P +DSKI L +GI T+EDLA S+DDL Sbjct: 421 -ENFSGNSPSDDLLNLPNMDSKIAFRLSASGISTLEDLAEQSIDDLADIE---------- 469 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G D+ +I+ AR + W + Sbjct: 470 -------GLSNDKAGELIMAAR-GICWFSDD 492 >gi|89095215|ref|ZP_01168138.1| transcription elongation factor NusA [Oceanospirillum sp. MED92] gi|89080512|gb|EAR59761.1| transcription elongation factor NusA [Oceanospirillum sp. MED92] Length = 495 Score = 580 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 210/513 (40%), Positives = 329/513 (64%), Gaps = 22/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + ++V+ + ++ A + Y +DIRV I+ TGD FR Sbjct: 2 NKEILLVAEAVSNEKDVPKEVIFEAIEVALATATKKRYDEEADIRVVIDRATGDYETFRR 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EEV +++++ A + D ++ G + + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WLVVSNEEVPALGTELTMEEAEEIDTALQPGDIHEEQVESVAFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++D+ GE+ISG+VK+V N+IVDLGN ++ ++ RD+ I RE R GDRV Sbjct: 122 EAERAKVVEQYRDRQGELISGSVKKVTRDNIIVDLGNNAEALLPRDQLIQREAFRMGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + +VR E RGPQ+++SR+ + +++LF +EVPEI +++++A SRDPGSRAK+AV Sbjct: 182 RAVLKEVRSEGRGPQLIMSRSCNEMLIELFRIEVPEISEEVIEIRAASRDPGSRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +VLD Sbjct: 242 TNDGRIDPVGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVLD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V V +E L++AIGR GQNVRLAS+LTGW ++++TEE+ Q + F Sbjct: 302 EETHSMDVAVAEENLAMAIGRSGQNVRLASELTGWELNVMTEEDAQAKHQSEVGSVIDNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE +A +LV EGF +EE+A V + E+ I+GFDE+ E++ RA++ L + I Sbjct: 362 INHLDVDEDVAEVLVEEGFTTLEEVAYVPVDEMLEIDGFDEDIVEELRKRAKDALLNLAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L ++ G+D + + GI TMEDLA S+DDLL Sbjct: 422 ASEEKLDKAEPAEDLLTMEGMDKHLAFLMAAQGIITMEDLAEQSIDDLLDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ ++I+ AR W +E Sbjct: 474 ---------GLDEEKAAALIMTARAP--WFAEE 495 >gi|300691722|ref|YP_003752717.1| transcription termination/antitermination L factor [Ralstonia solanacearum PSI07] gi|299078782|emb|CBJ51442.1| transcription termination/antitermination L factor [Ralstonia solanacearum PSI07] Length = 491 Score = 580 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + ++++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQEEESSAVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|126175440|ref|YP_001051589.1| transcription elongation factor NusA [Shewanella baltica OS155] gi|125998645|gb|ABN62720.1| NusA antitermination factor [Shewanella baltica OS155] Length = 499 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I+G VK+ +V+VDLGN +DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFVNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G+D + GI+T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGVEPSEELLALEGVDRHLAYVFASKGIETLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|254490591|ref|ZP_05103777.1| NusA N-terminal domain family [Methylophaga thiooxidans DMS010] gi|224464335|gb|EEF80598.1| NusA N-terminal domain family [Methylophaga thiooxydans DMS010] Length = 505 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 323/518 (62%), Gaps = 25/518 (4%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L + DA++ EK + ++V+ + ++ A R Y D V+I+ TGD FR Sbjct: 2 NNKEILLVVDAMSNEKGVSKEVIFQAIEAALAMATRKRYEMALDAHVQIDRVTGDYETFR 61 Query: 65 LLEVVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 +VE+ +E+ QI+L A + ++GG + +P+ ++FGR+A Q+AKQVI+ Sbjct: 62 QWLIVEDDDEEALESEETQITLSEALKKQDDAEVGGYIREPMESVEFGRIAAQTAKQVIV 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QKVREAER + +++KVG++I GTVKRV+ GNV +DLG N++ + R+E I RE+ R Sbjct: 122 QKVREAERAQVVDMYREKVGQMIHGTVKRVDRGNVTLDLGGNAEAFLPREEMIPRESFRT 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ Y+ ++R E RGPQ+++SR P+ +++LF +EVPEI +G++ +K +RDPG RAK Sbjct: 182 GDRIRGYLKEIRPEGRGPQLIVSRIAPELLIELFTLEVPEISDGMIDIKGAARDPGLRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV + +S IDPVGACVGMRGSRVQAV EL E++DI++W D A F INA+ PA V Sbjct: 242 IAVLAKESRIDPVGACVGMRGSRVQAVTNELGGERVDIILWDEDVARFAINAMAPAEVLS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V QLS AIGR GQNVRLASQLTGW +++++ + + + E Sbjct: 302 IVVDEDAHSMDIAVEDGQLSQAIGRSGQNVRLASQLTGWELNVMSSSDADKKAETEIGEL 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 Q FM+ ++VDE +A +L EGF+ +EE+A V E+ IE FD++ E++ RAR+ L Sbjct: 362 IQDFMKDLDVDEDVALILAQEGFSSLEEVAYVPEQEMLDIEEFDDDIVAELRSRARDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I ++++ S+EL + GI + + L N + T++DLA +VD+L+ Sbjct: 422 TRAIASEEQLESAEPSQELLDMEGITKDLALTLASNSVTTLDDLADLAVDELVEIG---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++Q ++I+ AR W E+ Sbjct: 478 -------------GMKEEQAAALIMKARES--WFANEQ 500 >gi|241764251|ref|ZP_04762282.1| NusA antitermination factor [Acidovorax delafieldii 2AN] gi|241366374|gb|EER60896.1| NusA antitermination factor [Acidovorax delafieldii 2AN] Length = 494 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 328/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSVDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R P +++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVPDVEVGEYIEEAIESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRSGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDTARKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L++EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILISEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + E VS++L + G+ ++ L ENG+ T +DLA ++D+L + Sbjct: 422 AREESVGE--VSQDLRDLEGLTPELIAKLAENGVHTRDDLADLAIDELTDLT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G + +++I+ AR W ++ Sbjct: 472 ---------GQSAEDAKALIMKAREH--WFAGQE 494 >gi|299067340|emb|CBJ38537.1| transcription termination/antitermination L factor [Ralstonia solanacearum CMR15] Length = 491 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 199/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++PS+++ + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSVNLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTNWQINIMTPAESAQKQAEESSTVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|319762633|ref|YP_004126570.1| transcription termination factor nusa [Alicycliphilus denitrificans BC] gi|330824723|ref|YP_004388026.1| NusA antitermination factor [Alicycliphilus denitrificans K601] gi|317117194|gb|ADU99682.1| transcription termination factor NusA [Alicycliphilus denitrificans BC] gi|329310095|gb|AEB84510.1| NusA antitermination factor [Alicycliphilus denitrificans K601] Length = 494 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 201/514 (39%), Positives = 326/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY D+RV I+ ++GD FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGDVDLRVSIDRDSGDYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R P I++G + +P+ + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVPDIEVGEYIEEPVESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++I++ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDLIIESGRVEGRLRRSEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETDAARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFESLEEVAYVPLQEMLEIESFDEDTVNELRVRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L + G+ ++ L + G+ T +DLA ++D+L + Sbjct: 422 AREESMG--SVSQDLRDLEGLTPELIAKLADAGVNTRDDLADLAIDELTELT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G + +++I+ AR W ++ Sbjct: 472 ---------GQSAEDAKALIMKAREH--WFTGQE 494 >gi|261867879|ref|YP_003255801.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413211|gb|ACX82582.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 498 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 198/515 (38%), Positives = 315/515 (61%), Gaps = 24/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WVVVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGD 180 ER + +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGD Sbjct: 122 ERSKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+A Sbjct: 182 RVRGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ Sbjct: 302 VDEDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEG 419 F+ + +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + Sbjct: 362 LFIDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITA 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 422 QVLAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDLADIEE---- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W + Sbjct: 478 -------------LGAEQAADLIMAAR-NICWFTE 498 >gi|77359942|ref|YP_339517.1| transcription elongation factor NusA [Pseudoalteromonas haloplanktis TAC125] gi|76874853|emb|CAI86074.1| transcription elongation protein (N utilization substance protein A) (L factor) [Pseudoalteromonas haloplanktis TAC125] Length = 499 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 191/515 (37%), Positives = 320/515 (62%), Gaps = 24/515 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK++ ++ + + ++ A + +G D+RV I+ +TGD +R Sbjct: 3 KEILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHGGDIDVRVAIDRKTGDYDTYRRW 62 Query: 67 E---VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QK Sbjct: 63 QIAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDFVEEQIDSIKFDRITTQMAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER E+K K GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGD Sbjct: 123 VREAERALVVEEYKSKEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+A Sbjct: 183 RIRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V Sbjct: 243 VKSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++ Sbjct: 303 MDEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKNEAESDKLLN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 363 LFTENLEIDDEFASLLINEGFSSLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTK 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 423 ALKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVITLEDLAEQGIDELVDITE----- 477 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 ------------LSPEKAGELIMAAR-NICWFADE 499 >gi|83748667|ref|ZP_00945684.1| N utilization substance protein A [Ralstonia solanacearum UW551] gi|207743364|ref|YP_002259756.1| n utilization substance protein [Ralstonia solanacearum IPO1609] gi|83724629|gb|EAP71790.1| N utilization substance protein A [Ralstonia solanacearum UW551] gi|206594761|emb|CAQ61688.1| n utilization substance protein [Ralstonia solanacearum IPO1609] Length = 491 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|113460963|ref|YP_719030.1| transcription elongation factor NusA [Haemophilus somnus 129PT] gi|112823006|gb|ABI25095.1| transcription elongation protein, N utilization substance protein A [Haemophilus somnus 129PT] Length = 493 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 207/510 (40%), Positives = 318/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+ Sbjct: 182 VLYKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM Sbjct: 302 NHSMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMT 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE AH+LV EGF ++EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALEIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V E+L ++ G+ I L E I T+E+LA VDDL E Sbjct: 422 EEEALKQAHVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 474 ---------LSAEQAADLIMAAR-NICWFN 493 >gi|113868282|ref|YP_726771.1| transcription elongation factor NusA [Ralstonia eutropha H16] gi|113527058|emb|CAJ93403.1| transcription pausing factor L [Ralstonia eutropha H16] Length = 491 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 334/509 (65%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L ARD +PSI++G + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDELGLQEPDKQILLFEARDENPSIELGDFIEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLATELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +S+I+ AR W Sbjct: 472 -------GVSEEEAKSLIMKAREH--WFN 491 >gi|187928209|ref|YP_001898696.1| transcription elongation factor NusA [Ralstonia pickettii 12J] gi|187725099|gb|ACD26264.1| NusA antitermination factor [Ralstonia pickettii 12J] Length = 491 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L A+++D I++ V + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQDADIEVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EERVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|207723239|ref|YP_002253638.1| n utilization substance protein [Ralstonia solanacearum MolK2] gi|206588435|emb|CAQ35398.1| n utilization substance protein [Ralstonia solanacearum MolK2] Length = 491 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|73541717|ref|YP_296237.1| transcription elongation factor NusA [Ralstonia eutropha JMP134] gi|72119130|gb|AAZ61393.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Ralstonia eutropha JMP134] Length = 491 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 333/509 (65%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L ARD D S+++G V + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDEQGLQEPDKQILLFEARDDDASLELGDYVEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHCMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDAVRKLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +++I+ AR W Sbjct: 472 -------GVTEEEAKALIMKAREH--WFN 491 >gi|91788290|ref|YP_549242.1| NusA antitermination factor [Polaromonas sp. JS666] gi|91697515|gb|ABE44344.1| NusA antitermination factor [Polaromonas sp. JS666] Length = 506 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 201/523 (38%), Positives = 323/523 (61%), Gaps = 24/523 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVDAISREKNVERDVVFGAVELALASATKKVYEDGVDIRVVVDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + + AR+ P I+ G + P+ + GR+ Q+AKQVI+QK+ Sbjct: 62 WLVVPDEAGLQNPEAEELVSDAREEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRMDKGDIIVESGRVEGRLRRSDMIPKENLRAGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSRT P++M++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDTTLRGAPIILSRTAPEYMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T +E + + + + + F Sbjct: 302 EERHAMDVVVDEENLAISIGRGGQNVRLAAELTGWKINIMTADESAQKQATETDTSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L++EGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILISEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ GVS+ L + GI ++ L E G+ T +DLA +VD+L + Sbjct: 422 AKEENAE--GVSQNLRDVEGITPELIAKLTEAGVHTRDDLADLAVDELTDIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G D+ +++I+ AR W + A Sbjct: 472 ---------GQSADEAKALIMTARAH--WFTNDASDTAAPATA 503 >gi|170717519|ref|YP_001784611.1| transcription elongation factor NusA [Haemophilus somnus 2336] gi|168825648|gb|ACA31019.1| NusA antitermination factor [Haemophilus somnus 2336] Length = 493 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 207/510 (40%), Positives = 318/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+ Sbjct: 182 VLYKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM Sbjct: 302 NHSMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMT 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE AH+LV EGF ++EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALEIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V E+L ++ G+ I L E I T+E+LA VDDL E Sbjct: 422 EEEALKQAQVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 474 ---------LSAEQAADLIMAAR-NICWFN 493 >gi|17546007|ref|NP_519409.1| transcription elongation factor NusA [Ralstonia solanacearum GMI1000] gi|17428302|emb|CAD14990.1| probable n utilization substance transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 491 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 199/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++PSI++ + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSINLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTSWQINIMTPAESAQKQAEESSTVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|148827021|ref|YP_001291774.1| transcription elongation factor NusA [Haemophilus influenzae PittGG] gi|148718263|gb|ABQ99390.1| transcription elongation factor NusA [Haemophilus influenzae PittGG] Length = 495 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 197/512 (38%), Positives = 324/512 (63%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ FM Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNTKHQAEDNKVLNLFMN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITVAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|256821530|ref|YP_003145493.1| NusA antitermination factor [Kangiella koreensis DSM 16069] gi|256795069|gb|ACV25725.1| NusA antitermination factor [Kangiella koreensis DSM 16069] Length = 497 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 208/514 (40%), Positives = 323/514 (62%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + +V+ + ++ A + +G D+RV+I+ TGD +RL Sbjct: 3 NKEILLVVEAVSNEKDVQPEVIFGAIEAALATATKKKHGVDIDVRVDIDRHTGDYDTYRL 62 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + VE+ + +L A+ DP I IG V + + ++FGR+A Q+AKQVI+QKVR Sbjct: 63 WTVVADDAVEDPLTETTLSAAQVEDPEIQIGDYVEEQIESIEFGRIAAQTAKQVIVQKVR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + F+D+VG++++G VK+V + +DLG N++ VI+R+E + RE +R GDRV Sbjct: 123 EAERAKTVEAFRDRVGDLVTGVVKKVTRDYIFIDLGSNAEAVIQREEMMPRETVRTGDRV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y + E RGPQ+ +SRT P+ + +LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 183 RGLLYAISTENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDPGSRAKVAVK 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRG+RVQAV EL E+IDIV++ + A +VINA+ PA V +V+D Sbjct: 243 TNDKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAPAEVVSIVVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++QL+ AIGR GQN+RLAS+LTGW ++++TEE+ + Q + F Sbjct: 303 EDRRSMDIAVNEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQSETESIVSMF 362 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V SE+ IEGFDE+ ++ RA++ L I Sbjct: 363 VADLGVDEDLADILVQEGFTTLEEVAYVPQSEMLEIEGFDEDLVDALKSRAKDVLLTKAI 422 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ E+ +E+L ++ G+D + L GI TMEDLA SVD+L+ E Sbjct: 423 ANEEQLEEVEPAEDLLTMDGMDRHLAFVLASKGIVTMEDLAEQSVDELIEIEELDEER-- 480 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +I+ AR W E+++ Sbjct: 481 ---------------AAKLIMTARAP--WFEEQE 497 >gi|119477402|ref|ZP_01617593.1| N utilization substance protein A [marine gamma proteobacterium HTCC2143] gi|119449328|gb|EAW30567.1| N utilization substance protein A [marine gamma proteobacterium HTCC2143] Length = 502 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 216/519 (41%), Positives = 329/519 (63%), Gaps = 22/519 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + RD++ + ++ A + Y +DI V I+ E+G FR Sbjct: 2 NKEILLVAEAVSNEKGVPRDIIFEAIEQALATATKKRYDEDADIHVIIDRESGGYETFRR 61 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + E Q + + A ++D S+ IG V + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WEVVSDDEMALLGTQFTTEEAAEKDTSLQIGDVYEEKIENVGFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + E++ +VGE+ISGTVK+V N+IVDLGN ++G + R+E + RE R GDRV Sbjct: 122 EAERAQVVEEYEGRVGELISGTVKKVTRDNIIVDLGNNAEGSLPREELVGREVFRMGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+ LSR + +++LF +EVPEI ++ ++A +RDPGSRAK+AV Sbjct: 182 RAILQDVRPEARGPQLFLSRACSEMLIELFKVEVPEISEEVIDIRAAARDPGSRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+D Sbjct: 242 TNDGRIDPIGACVGMRGSRVQAVSGELGNERVDIILWDDNPAQLVINAMAPAEVESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V + L+ AIGR GQNVRLAS LTGWTI++++ E+ S +K+ F Sbjct: 302 EDSRSMDVAVAADNLAQAIGRSGQNVRLASDLTGWTINVMSLEDASEKHEKESGAVIAEF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M++++VDE IA +LV EGF +EE+A V + E+A IEGFDE+ A E++ RA++ L I Sbjct: 362 MESLDVDEDIAEVLVDEGFTSLEEVAYVPLEELAGIEGFDEDIAEELRARAKDALLTQAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ ++ +E+L ++ G++ + L GI TMEDLA +V+DL+ Sbjct: 422 ASEEQLGDVEPAEDLLTMDGMERHLAFVLASKGIITMEDLAEQAVEDLMDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 G + Q +I+ AR W + + + + Sbjct: 474 ---------GLEEKQAGELIMTARAP--WFAEAEETENQ 501 >gi|86148618|ref|ZP_01066901.1| transcription elongation factor NusA [Vibrio sp. MED222] gi|218710446|ref|YP_002418067.1| transcription elongation factor NusA [Vibrio splendidus LGP32] gi|85833609|gb|EAQ51784.1| transcription elongation factor NusA [Vibrio sp. MED222] gi|218323465|emb|CAV19642.1| Transcription elongation protein nusA [Vibrio splendidus LGP32] Length = 495 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEAVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 THSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + Sbjct: 362 HLDIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W E+ Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495 >gi|114562167|ref|YP_749680.1| transcription elongation factor NusA [Shewanella frigidimarina NCIMB 400] gi|114333460|gb|ABI70842.1| NusA antitermination factor [Shewanella frigidimarina NCIMB 400] Length = 499 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 194/515 (37%), Positives = 318/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGLPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+ + AR +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDQGEALENPYSEITFEAARYEEPEIQVGEFIEDQIDSVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F ++ GEI++G VK+ +V+VDLGN +DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVEQFIEREGEIVTGVVKKSTRESVVVDLGNNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+R+ + +++LF +EVPEIY+ +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRSKAEMLIELFRVEVPEIYDELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVID 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++VD+ A +L EGF +EE+A V SE+ ++EGFDE ++ RA+ + Sbjct: 362 LFVAYLDVDKDFAAVLADEGFTSLEEIAYVPESELLAVEGFDEGIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + S++L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSDDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGEE 498 >gi|91792366|ref|YP_562017.1| transcription elongation factor NusA [Shewanella denitrificans OS217] gi|91714368|gb|ABE54294.1| NusA antitermination factor [Shewanella denitrificans OS217] Length = 499 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 197/515 (38%), Positives = 319/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I+ G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDQGEALENPYSEITLEAARYEEPGIEPGQYIEDQIDSVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F +K GEI++G VK+ NV+VDLGN +DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFIEKEGEIVTGIVKKSSRENVVVDLGNNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+R+ P+ +++LF +EVPEIY+ ++++ +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRSKPEMLIELFRVEVPEIYDEMIEIMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDENPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVID 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+ VD A +L EGF +EE+A V +E+ +I+GFD + ++ RA+ + Sbjct: 362 LFVSALEVDTDFATVLAEEGFTSLEEIAYVPEAELLAIDGFDSDIVETLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIEIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W +E Sbjct: 477 ------------LTEAKAGELIMAAR-NICWFGEE 498 >gi|254516618|ref|ZP_05128677.1| N utilization substance protein A [gamma proteobacterium NOR5-3] gi|219675041|gb|EED31408.1| N utilization substance protein A [gamma proteobacterium NOR5-3] Length = 497 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 208/512 (40%), Positives = 325/512 (63%), Gaps = 22/512 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R Sbjct: 3 KEILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRW 62 Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + E Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+ Sbjct: 63 LVVPDDEMALLGTQFTTEEAIEQDPSLKPGDVYQEQVENVGFGRIAAQTAKQVIVQKVRD 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + +++ +VGE+I+GTVK+V NVIVDLGN ++G++ R++ + RE R DRV+ Sbjct: 123 AERAQVVEQYESRVGELIAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV + Sbjct: 183 AILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE Sbjct: 243 NDQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM Sbjct: 303 ESNTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEAVEKQEAEAGQVIQTFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE +A +LV EGF +EE+A V I E+ SI+GFDE+ A E++ RA++ L + I Sbjct: 363 DKLDVDEDVAGILVDEGFTTLEEVAYVPIDEMTSIDGFDEDIAEELRARAKDALLTLAIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ + +L + G+D + L GI TMEDLA VD+L+ Sbjct: 423 SEEELGAQEPAADLLGMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIE--------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR W E+E Sbjct: 474 --------DMTEERAGELIMTARAP--WFEEE 495 >gi|127513756|ref|YP_001094953.1| transcription elongation factor NusA [Shewanella loihica PV-4] gi|126639051|gb|ABO24694.1| NusA antitermination factor [Shewanella loihica PV-4] Length = 499 Score = 577 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 201/515 (39%), Positives = 316/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG+ FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ AR +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER + +F +K GE+I+G VK+ +V+VDLGN +D V+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A++VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ + Sbjct: 362 LFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|84387286|ref|ZP_00990307.1| transcription elongation factor NusA [Vibrio splendidus 12B01] gi|84377933|gb|EAP94795.1| transcription elongation factor NusA [Vibrio splendidus 12B01] Length = 495 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEAVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN ++ VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + Sbjct: 362 HLDIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W E+ Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495 >gi|163857446|ref|YP_001631744.1| transcription elongation factor NusA [Bordetella petrii DSM 12804] gi|163261174|emb|CAP43476.1| N utilization substance protein A [Bordetella petrii] Length = 492 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 311/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + ++IRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDAEIRVAIDRETGSHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDALELVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISGT+KR++ G++IV+ G + + R E I +EN R GDR+++ Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDIIVETGKIEARLPRSEMIPKENFRVGDRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLSRQETERAGLRAAFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L S Sbjct: 424 EER---LETAQDLLELEGMTPELAAKLAERQVLTRDDLAELATDELAEIS---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + Q +I+ AR W ++E Sbjct: 471 -------GLDEQQASELIMRARAH--WFDEE 492 >gi|56478754|ref|YP_160343.1| transcription elongation factor NusA [Aromatoleum aromaticum EbN1] gi|56314797|emb|CAI09442.1| N utilization substance protein A [Aromatoleum aromaticum EbN1] Length = 491 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 334/509 (65%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ +TGD FR Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRINDEADVRVTIDRDTGDYESFRRWV 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ P I++G + +PL P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VMPDEEVVNDEAEMGIIDAREMVPGIELGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ ++SG++KR+E GN I+++G + VI RD+ I RENLR GDRVK++ Sbjct: 124 EREQILNDFLERKEHLVSGSIKRMERGNAIIEIGRLEAVIPRDQMIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F+ KLF +EVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRGARGPQLILSRTAPEFVGKLFELEVPEIEDGLLEIKACARDPGLRAKIAVQSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FVI AL+PA V +V+DE+ Sbjct: 244 PRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSADPAQFVIAALQPAEVVSIVVDEES 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++EEE + ++ + FM+ Sbjct: 304 HAMDVVVDENNLAIAIGRNGQNVKLASELTGWTINLMSEEESAQKTGQEREGLRELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD+ +A +L+ EGF+ +EE+A V ++E+ IE FDE T E++ RAR L I + Sbjct: 364 LDVDDELADILIDEGFSSLEEIAYVPLAEMLEIEAFDEGTVNELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + + VS++L ++ G+D + L +G+ T +DLA +VD+L+ + Sbjct: 424 EHLEN--VSDDLINLEGMDKSLAATLARHGVLTRDDLADLAVDELVEIA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ ++I AR W E+ Sbjct: 471 ------GIEQERASALISVARAH--WFEE 491 >gi|120612038|ref|YP_971716.1| NusA antitermination factor [Acidovorax citrulli AAC00-1] gi|120590502|gb|ABM33942.1| NusA antitermination factor [Acidovorax citrulli AAC00-1] Length = 494 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 200/514 (38%), Positives = 327/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF+ +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFSSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L + Sbjct: 422 AREESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDELTALT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +++I+ AR W ++ Sbjct: 472 ---------GQSEEEAKALIMKAREH--WFAGQE 494 >gi|121604913|ref|YP_982242.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2] gi|120593882|gb|ABM37321.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 506 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 201/511 (39%), Positives = 318/511 (62%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVDAISREKNVERDVVFGAVELALASATKKVYADGVDIRVAVDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + + ARD P I+ G + P+ + GR+ Q+AKQVI+QK+ Sbjct: 62 WLVVADEAGLQNPEAEELVTDARDEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRMDKGDLIVESGRVEGRLRRSDMIPKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSRT P++M++LF EVPEI G++++K +RDPGSRAK+AV Sbjct: 182 RAMIMEVDTTLRGAPIILSRTSPEYMIELFRQEVPEIEQGLLEIKTCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDANESAQKQATETDSSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M ++VD+ IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MAKLDVDQEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + GVS+ L + G+ ++ L E G+ T +DLA +VD+L + Sbjct: 422 AQEENVG--GVSQNLRDVEGLTPELIAKLTEAGVATRDDLADLAVDELTDIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +++I+ AR W Sbjct: 472 ---------GQSADEAKALIMTARAH--WFT 491 >gi|332290219|ref|YP_004421071.1| transcription elongation factor NusA [Gallibacterium anatis UMN179] gi|330433115|gb|AEC18174.1| transcription elongation factor NusA [Gallibacterium anatis UMN179] Length = 495 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 200/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + ++ + + Y D+RV I+ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESALAISTKKKYEQDIDVRVSIDQKTGDFVTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V + T +I+L+ A+ +P I +G + D + + F R+ +Q+ +QVI K+R+A Sbjct: 62 WLVVENVTHPTKEITLEAAQIEEPEIQLGEYIEDEIESIPFDRITMQTVRQVISAKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +FK++ GEII+G VK+V NVI+DLGN ++ +I R++ + REN R GDRV+ Sbjct: 122 ERNKVVEQFKEREGEIITGIVKKVNRENVILDLGNQAEAIILREDLLPRENFRAGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V + +GPQ+ ++R+ P+ +++LF +EVPEI G++++KA +RD G RAK+AV S Sbjct: 182 VLYRVSSDPKGPQLFVTRSKPEMLIELFKIEVPEIGEGVIEIKAATRDAGVRAKIAVKSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELDGERVDIVLWDDNPAQFVINAMAPADVVSIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNV LAS+LTGW +++++ +E Q + + FM+ Sbjct: 302 KKSMDIAVEAANLAQAIGRNGQNVNLASRLTGWKLNVMSSDELENKHQLENQKTVNLFME 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++DE A+LL EGF +EE+A V E+ I+GFDE+ A E++ RA+E L I + Sbjct: 362 SLDLDEEFANLLTEEGFRTLEEIAYVPTEELLEIDGFDEDLAEELRNRAKEVLTKIALAE 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + V E L + G++ + V L E I T+E+LA VDDL Sbjct: 422 EQALANIDVEEALLKLDGMNRHLAVKLAEKKITTLEELAEQGVDDLADVE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W E+ Sbjct: 472 -------GLSAEQAAQLIMAAR-NICWFGNEE 495 >gi|90022354|ref|YP_528181.1| transcription elongation factor NusA [Saccharophagus degradans 2-40] gi|89951954|gb|ABD81969.1| transcription termination factor NusA [Saccharophagus degradans 2-40] Length = 493 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 207/513 (40%), Positives = 326/513 (63%), Gaps = 25/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L +ADAV+ EK +D+ ++ + ++ A + Y +DI+V I+ + GD R Sbjct: 2 KKEILLVADAVSNEKGVDKGIIFEAIELALASATKKRYDEDADIKVTIDRKDGDYVTVRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV++ + Q + + A ++DPS+ G V + + +DFGR+A Q+AKQVI+QKVR Sbjct: 62 WLVVDDDTLAELGTQFTTEEAIEKDPSLKPGDVYEEVIENVDFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + E++ +VGE+I+GTVK+V N+IVDLG N++G++ R+E + RE R DRV Sbjct: 122 EAERAQIVDEYRGRVGELIAGTVKKVTRDNIIVDLGGNAEGLLPREELVGREVFRMNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+ LSR P+ +++LF +EVPEI ++ + A +RDPGSRAK+AV Sbjct: 182 RAVLADVRPEARGPQLFLSRACPEMLIELFKIEVPEIAEEVISLNAAARDPGSRAKIAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL +E+IDI++W + A FVINA+ PA + +V+D Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIILWDDNPAQFVINAMAPAEIESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ G ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ ++ + + + F Sbjct: 302 EEAGSMDVAVAEDNLAQAIGRGGQNVRLASELTGWEINVMSVDQWNEKQAAEAGSARDVF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A+++DE +A +LV EGF +EE+A V + E +IEGFDEE A E++ RA++ L + Sbjct: 362 INALDIDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEEIAEELRNRAKDALLTQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K +++L ++ G+D + L G+ MEDLA +VD+L+ Sbjct: 422 AGEEK---NQPADDLVNMEGMDDALAQTLAARGVICMEDLAEQAVDELMEID-------- 470 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ ++I+ AR W E Sbjct: 471 ---------GMDEERAAALIMKAREP--WFADE 492 >gi|114321098|ref|YP_742781.1| transcription elongation factor NusA [Alkalilimnicola ehrlichii MLHE-1] gi|114227492|gb|ABI57291.1| NusA antitermination factor [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 222/515 (43%), Positives = 328/515 (63%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +A + EK +DR+V+ + ++ A R + D RVE+N TGD S FR Sbjct: 2 SKEILLVVEATSNEKGVDREVIFEAIEAALASATRKRHPEDIDARVEVNRNTGDYSTFRR 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE +VE+ QI+L+ AR R P I++G + +P+ ++FGR+A Q+AKQVI+QKV Sbjct: 62 WWVVESDEDVESPARQITLEEARQRQPDIEVGECLEEPMESVEFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + F+D++GE+++GTVKR+E G+VI+DLG N++ +I R+ I RE +R DR Sbjct: 122 REAERAKVVEAFQDRIGELVTGTVKRLERGSVIMDLGGNAEALIPREAMIPREAVRREDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ DVR E RGPQ+ +SRT P+F+V+LF +EVPE+ ++++ +RDPG RAK+AV Sbjct: 182 LRGYLKDVRPEPRGPQLFVSRTAPEFLVELFKLEVPEVGQELIEIMGAARDPGVRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVGMRGSRVQAV EL E+IDI++W + A FVINAL PA V +V+ Sbjct: 242 RALDPRIDPVGACVGMRGSRVQAVSNELAGERIDIILWDDNPAQFVINALAPAEVESIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V +EQLS AIGR GQNVRLAS+LTGW ++++T EE Q++ + Q Sbjct: 302 DEDRHSMDIAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKNQEEAAQYQQL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE IA +LV EGF+ +EE+A V +E+ +E FDE+ E++ RAR+ L Sbjct: 362 FQEKLDVDEEIAAILVQEGFSSLEEVAYVPAAELLEVEEFDEDIVDELRARARDVLVSEA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +E+L ++ G+D + AL G+ TMEDLA SVD+L+ Sbjct: 422 EERESA--GTEPAEDLLTMEGMDEDLARALAARGVCTMEDLAEQSVDELMEIE------- 472 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G + + +I+ AR W ++ Sbjct: 473 ----------GMDETRAGQLIMKAREP--WFADQQ 495 >gi|307825109|ref|ZP_07655330.1| transcription termination factor NusA [Methylobacter tundripaludum SV96] gi|307733857|gb|EFO04713.1| transcription termination factor NusA [Methylobacter tundripaludum SV96] Length = 505 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 213/519 (41%), Positives = 323/519 (62%), Gaps = 27/519 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + D + EK I++++V + +++ A + RV IN +TGD +R+ Sbjct: 3 NKEILLVVDVFSNEKDIEKEIVFQAIESALEAATIKRHANQIKARVSINRKTGDYVTYRV 62 Query: 66 LEVVE-------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 EVV+ +VE Q+ L+VAR +P + IG +V + + +DFGR+A Q+AKQVI Sbjct: 63 WEVVDANSQIDGDVEFPETQVLLEVARFDNPDVQIGDLVEEEIESVDFGRIAAQTAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 I KVREAER + ++ +VGE+I+G VKR+E G+V +DLG + I +++ I RE +R Sbjct: 123 IHKVREAERKKIVDAYQSRVGELITGIVKRIEKGSVYLDLGGHVEAYIAKEDMIPREAIR 182 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ Y+ DVR E RGPQ+ +SRT P+ ++ LF +EVPE+ G+++V +RDPGSRA Sbjct: 183 IGDRIRGYLKDVRSEPRGPQLFVSRTAPELLIALFRLEVPEVGEGLIEVMGAARDPGSRA 242 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV +D +DPVGACVGMRGSRVQ+V EL E++DI++W+P A FVINA+ PA + Sbjct: 243 KIAVKGNDPRLDPVGACVGMRGSRVQSVSNELAGERVDIILWNPSDAQFVINAMSPAEIQ 302 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V + LS AIGR GQNVRLA+QLTGW +++I + N + + ++ Sbjct: 303 SIVVDEDKHSMDLAVSSDNLSQAIGRGGQNVRLATQLTGWELNVIDASKAEQNSEAEADK 362 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q F+ +++DE IA +LV EGF VEE+A V +SE+ IEGFDEE ++ RA++ L Sbjct: 363 IKQMFIDQLDIDEDIALILVEEGFNTVEEIAYVPVSEMLEIEGFDEELVNALRSRAKDAL 422 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++KI +++L + G+D + + GI TM+DLA SVDDLL + Sbjct: 423 LISAIAAEEKIETAEPAQDLLEMEGMDRDLAYDMASQGIITMDDLAEQSVDDLLNFP--- 479 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +D+ +I+ AR W +E+ Sbjct: 480 --------------GINEDRAAKLIMKAREP--WFAEEQ 502 >gi|94310970|ref|YP_584180.1| transcription elongation factor NusA [Cupriavidus metallidurans CH34] gi|93354822|gb|ABF08911.1| transcription termination/antitermination L factor [Cupriavidus metallidurans CH34] Length = 491 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 205/509 (40%), Positives = 330/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++ I + + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDEQGLQEPDKQILLFEAREQNADIQLDDYIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G+ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELVELA---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +++I+ AR W Sbjct: 472 -------GVGEEEAKALIMKAREH--WFN 491 >gi|326316665|ref|YP_004234337.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373501|gb|ADX45770.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 494 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 201/514 (39%), Positives = 327/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L + Sbjct: 422 AREESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDELTALT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +++I+ AR W ++ Sbjct: 472 ---------GQSEEEAKALIMKAREH--WFAGQE 494 >gi|149909281|ref|ZP_01897937.1| N utilization substance protein A [Moritella sp. PE36] gi|149807598|gb|EDM67546.1| N utilization substance protein A [Moritella sp. PE36] Length = 499 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 314/516 (60%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + M ++ A + Y ++RVEI+ +TG+ FR Sbjct: 2 NKEILLVVDAVSNEKALPREKIFEAMEIALATATKKRYEGDIEVRVEIDRKTGNFETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L A+ D +I++GG + D + + F RV Q+AKQVIIQK Sbjct: 62 WLVIDDKGEPLENPFSEITLDAAKYDDETIEVGGYIEDTIDSVVFDRVTTQTAKQVIIQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAERD + GE+I+G VKR V++DLGN ++ V+ RDE + RE+ R GD Sbjct: 122 VREAERDLIVQHYAKHEGELITGLVKRANRETVVLDLGNNAEAVMFRDEMLPRESFRTGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K + +V+ E RG Q+ +SR + +++LF +EVPE ++++KA +RDPGSRAK+A Sbjct: 182 RIKGLLKEVKPEARGTQLFISRACNEMLIELFRIEVPEFNEEMLELKAAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQAV EL E++DI++W + A FVINA+ PA V ++ Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAVSNELNGERVDIILWDDNPAQFVINAMAPAEVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E L+ AIGR GQNVRLASQLTGW ++++T E + QK+ + Sbjct: 302 VDEDQHSMDIAVEQENLAQAIGRNGQNVRLASQLTGWELNVMTVAEANEKHQKENDRLMN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +++DE +A LL+ EGF+ +EE+A V ++E I+GFDE+ E++GRA+ L Sbjct: 362 IFTDKLDIDEDMAELLIEEGFSSLEEIAYVPVNEFLQIDGFDEDLVDELRGRAKNALTTS 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + S +L ++ G++ + L G+ T+E+LA S+DDL E Sbjct: 422 ALAAEESLESAEPSADLLALEGLEKHLAYVLASIGVITLEELAEQSIDDLSEIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W + Sbjct: 477 ------------LTDERAGELIMAAR-NICWFSDSE 499 >gi|253997782|ref|YP_003049845.1| transcription elongation factor NusA [Methylovorus sp. SIP3-4] gi|253984461|gb|ACT49318.1| NusA antitermination factor [Methylovorus sp. SIP3-4] Length = 488 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 210/507 (41%), Positives = 331/507 (65%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +++EN Q+ +R + +G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 VVSDDDLENPAAQMYTDD--ERAEGLSLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+ Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ + Sbjct: 422 EKLEEA--SESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELMEMA----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ + +I+ AR W Sbjct: 469 ------NMDAERAKQLIMTARAP--WF 487 >gi|91762480|ref|ZP_01264445.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1002] gi|91718282|gb|EAS84932.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1002] Length = 530 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 242/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F Sbjct: 19 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 78 Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L VVE+ EN +I+L+ A + + IG + PLP DFGR+A Q+AKQVI Sbjct: 79 RKLIVVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 138 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD Sbjct: 139 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 198 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+ Sbjct: 199 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 258 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 259 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 318 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 319 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 378 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ + Sbjct: 379 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 438 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G Sbjct: 439 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K + + +I+ AR Sbjct: 499 RIKIQGYLEDFALSKTEADELIMSAR 524 >gi|70734336|ref|YP_257976.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf-5] gi|68348635|gb|AAY96241.1| N utilization substance protein A [Pseudomonas fluorescens Pf-5] Length = 493 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 211/511 (41%), Positives = 320/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEE +++ + L AR+ P +G V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEEADLDDPAVETWLSKARETHPDAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|284006667|emb|CBA71929.1| transcription elongation protein (N utilization substance protein A) [Arsenophonus nasoniae] Length = 504 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 214/519 (41%), Positives = 318/519 (61%), Gaps = 25/519 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVNIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L A+ D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLDAAKFEDSEIKLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVEQFREQQGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSR K+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRTKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLASQL W ++++T EE Q + + Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLASQLLKKHRGDDRWELNVMTAEELEAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F++ +++DE A LV EGF+ +EELA V I+E+ IEG DE T ++ RA+ L Sbjct: 362 SINSFVKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIEGLDETTIEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +E+L ++PG++ + + L +GI T+EDLA +DDL E Sbjct: 422 TTLELAQKESMGDNQRTEDLLNLPGMNHALAMNLAAHGICTLEDLAEQGIDDLRDIEE-- 479 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W + Sbjct: 480 --------------GLNDEQAGEIIMAAR-NICWFGNDP 503 >gi|239997162|ref|ZP_04717686.1| transcription elongation factor NusA [Alteromonas macleodii ATCC 27126] Length = 498 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 316/515 (61%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKV Sbjct: 62 WLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + E++DKVGE+++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDR Sbjct: 122 REAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + Sbjct: 302 DEDSNSMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLDL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++DE A +LV EGF +EE+A V SE+ ++EG DEE E++ RAR +L Sbjct: 362 FTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEEMVEELRNRARAFLTTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E L ++ G+ + L G+ +E+LA DD+ E Sbjct: 422 LANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVTDLEELAEQGTDDISDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ ++I+ AR + W +E+ Sbjct: 476 -----------LDEEKAGALIMAAR-NIVWFSEEE 498 >gi|146283631|ref|YP_001173784.1| transcription elongation factor NusA [Pseudomonas stutzeri A1501] gi|145571836|gb|ABP80942.1| N utilization substance protein A [Pseudomonas stutzeri A1501] gi|327482026|gb|AEA85336.1| transcription elongation factor NusA [Pseudomonas stutzeri DSM 4166] Length = 493 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 211/511 (41%), Positives = 325/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + Y D+RVEIN G FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDDVDLRVEINRHNGSYETFRR 61 Query: 66 LEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV++ E+ Q++L A++R+P +G V + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDDEHFEDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + ++D+VGEIISGTVK+V +VIVDLGN ++ ++ R++ I+RE R G RV Sbjct: 122 EAERAQVVEAYRDRVGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGARV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQFVINAMAPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q++ + + F Sbjct: 302 EDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ ++VDE +A +LV EGF +EE+A V + E+ IEGFDE+ E++ RA++ L I Sbjct: 362 IEELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L ++ G+D ++ V L G+ T EDLA S Sbjct: 422 ANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|313199846|ref|YP_004038504.1| nusa antitermination factor [Methylovorus sp. MP688] gi|312439162|gb|ADQ83268.1| NusA antitermination factor [Methylovorus sp. MP688] Length = 488 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 209/507 (41%), Positives = 332/507 (65%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V +++EN Q+ +R +++G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 IVSDDDLENPAAQMYTDD--ERAEGLNLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+ Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ + Sbjct: 422 EKLEEA--SESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELMEMA----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ + +I+ AR W Sbjct: 469 ------NMDAERAKQLIMTARAP--WF 487 >gi|308050585|ref|YP_003914151.1| NusA antitermination factor [Ferrimonas balearica DSM 9799] gi|307632775|gb|ADN77077.1| NusA antitermination factor [Ferrimonas balearica DSM 9799] Length = 500 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 208/516 (40%), Positives = 326/516 (63%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ TG+ FR Sbjct: 2 SKEILLVAEAVSNEKAVPREKIFEALEFALATATKKKYELEIDVRVAIDQRTGEFDTFRR 61 Query: 66 LEVVE---EVENYTCQISLKVAR--DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 EV+E E+E T Q+ L AR + D +I++G V + + + F R+ Q+AKQVI+Q Sbjct: 62 WEVIEDDAEMEVPTRQVFLSSARAMEEDETIEVGDFVEEQIESITFDRITTQTAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVREAER + +FKDK GE+++G VK+V ++IVDLGN +D ++ R+E + REN RPG Sbjct: 122 KVREAERAQVVEQFKDKEGELVTGVVKKVNRDSIIVDLGNNADAILFREEMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++ ++ VR E RG Q+ LSRT P+ +++LF +EVPEI ++++ +RDPGSRAK+ Sbjct: 182 DRVRALLHSVRLESRGSQLFLSRTRPEMLIELFRIEVPEIGEEMIEIVGAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D IDPVGACVGMRG+RVQAV EL E+IDIV+W+ ++A +VINA+ PA V+ + Sbjct: 242 AVKSNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWNDNTAQYVINAMAPADVSSI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++V V K+ L+ AIGR GQNVRLASQ+TGW ++++T E+ Q + + Sbjct: 302 VVDEDAKSMDVAVEKDSLAQAIGRNGQNVRLASQVTGWELNVMTTEDMQEKHQAESAKLV 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F++++++D+ A +LV EGF +EE+A V ++E+ IEG DEET ++ RA+ L Sbjct: 362 TQFVESLDIDDEFASVLVDEGFTSLEEIAYVPVNELLEIEGLDEETVEALRERAKAALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + +E+L ++ G++ + L G+ T+EDLA +DDL E Sbjct: 422 RALASEEALDGAEPAEDLLNLEGMERHLAYVLASRGVVTLEDLADQGIDDLSDIEE---- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++Q +I+ AR + W ++ Sbjct: 478 -------------LSEEQAGELIMAAR-NICWFGED 499 >gi|50119658|ref|YP_048825.1| transcription elongation factor NusA [Pectobacterium atrosepticum SCRI1043] gi|49610184|emb|CAG73626.1| N utilization substance protein A [Pectobacterium atrosepticum SCRI1043] Length = 509 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 209/524 (39%), Positives = 317/524 (60%), Gaps = 32/524 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+ + GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFRQQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+ID+++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDVILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTYTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSEDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEGFDEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGFDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDD 507 >gi|212634073|ref|YP_002310598.1| transcription elongation factor NusA [Shewanella piezotolerans WP3] gi|212555557|gb|ACJ28011.1| Transcription termination factor NusA [Shewanella piezotolerans WP3] Length = 499 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 196/515 (38%), Positives = 315/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A DP I++GG + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDTGEPLENPFREITLEAAVYDDPEIELGGFIEDEIDSVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGSNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT + +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKSEMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESAKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+++++VD A +L EGF +EE+A V SE+ IEGFDE+ ++ RA+ + Sbjct: 362 LFIESLDVDSEFAQVLADEGFTSLEEIAYVPSSELLEIEGFDEDIVESLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|261820127|ref|YP_003258233.1| transcription elongation factor NusA [Pectobacterium wasabiae WPP163] gi|261604140|gb|ACX86626.1| NusA antitermination factor [Pectobacterium wasabiae WPP163] Length = 509 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 209/524 (39%), Positives = 316/524 (60%), Gaps = 32/524 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ ++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDD 507 >gi|332532410|ref|ZP_08408288.1| transcription termination protein NusA [Pseudoalteromonas haloplanktis ANT/505] gi|332038053|gb|EGI74500.1| transcription termination protein NusA [Pseudoalteromonas haloplanktis ANT/505] Length = 499 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 189/515 (36%), Positives = 320/515 (62%), Gaps = 24/515 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR Sbjct: 3 KEILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVAIDRKTGDYDTFRRW 62 Query: 67 E---VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QK Sbjct: 63 QIAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDYVEEQIDSIKFDRITTQMAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER +KD+ GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGD Sbjct: 123 VREAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+A Sbjct: 183 RIRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V Sbjct: 243 VKSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++ Sbjct: 303 MDEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRTKNEAESDKLLN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 363 LFTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTK 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 423 ALKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE----- 477 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 ------------LSSEKAGELIMAAR-NICWFADE 499 >gi|222110449|ref|YP_002552713.1| nusa antitermination factor [Acidovorax ebreus TPSY] gi|221729893|gb|ACM32713.1| NusA antitermination factor [Acidovorax ebreus TPSY] Length = 494 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 324/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIDRDSGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L + G+ ++ L E G+ T +DLA ++D+L + Sbjct: 422 VREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDELTELT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G + ++I+ AR W ++ Sbjct: 472 ---------GQSAEDATALIMKAREH--WFTGQE 494 >gi|293604237|ref|ZP_06686645.1| N utilization substance A [Achromobacter piechaudii ATCC 43553] gi|292817462|gb|EFF76535.1| N utilization substance A [Achromobacter piechaudii ATCC 43553] Length = 492 Score = 574 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 310/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPDIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 YVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRTTFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGMTQELAAKLAERQVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492 >gi|301156201|emb|CBW15672.1| transcription termination/antitermination L factor [Haemophilus parainfluenzae T3T1] Length = 495 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 199/512 (38%), Positives = 320/512 (62%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +++L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEMTLEAAQFEDPNVQLGDYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+ + G+I++GTVK+V ++I+DLG ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+ Sbjct: 182 VLYKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM Sbjct: 302 NHSMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMD 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 + +DE A +LV EGF +EE+A V +SE+ +I+G DE+ E+QGRA++ + Sbjct: 362 KLGLDEDFAQILVDEGFTSLEEVAYVPVSELTAIDGLEDEDLIEELQGRAKDAITAAAAA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLADIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q I+ AR + W +E Sbjct: 474 ---------LTAEQAADFIMAAR-NICWFSEE 495 >gi|315126157|ref|YP_004068160.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913] gi|315014671|gb|ADT68009.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913] Length = 499 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 189/515 (36%), Positives = 318/515 (61%), Gaps = 24/515 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TGD FR Sbjct: 3 KEILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIDVRVAIDRKTGDYDTFRRW 62 Query: 67 EVVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ E +E+ +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QK Sbjct: 63 QIAEVLEDGSLENPYSEITLEAAQVEEPDLKMGDYVEEQIESIKFDRITTQMAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VREAER +KD+ GE+++G VK+ +++DLGN ++ VI RD+ + REN RPGD Sbjct: 123 VREAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+A Sbjct: 183 RIRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V Sbjct: 243 VKSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++ Sbjct: 303 MDEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRAKNEAESDKLIN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 363 LFTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTK 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 423 ALKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE----- 477 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 ------------LSSEKAGELIMAAR-NICWFADE 499 >gi|88705684|ref|ZP_01103394.1| Transcription elongation protein nusA [Congregibacter litoralis KT71] gi|88700197|gb|EAQ97306.1| Transcription elongation protein nusA [Congregibacter litoralis KT71] Length = 497 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 207/512 (40%), Positives = 326/512 (63%), Gaps = 22/512 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R Sbjct: 3 KEILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRW 62 Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + E Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+ Sbjct: 63 LVVPDDELALLGTQFTTEEAIEQDPSLKPGDVHEEKVENVGFGRIAAQTAKQVIVQKVRD 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER + ++ +VGE+++GTVK+V NVIVDLGN ++G++ R++ + RE R DRV+ Sbjct: 123 AERAQVVELYESRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV + Sbjct: 183 AILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE Sbjct: 243 NDQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM Sbjct: 303 ENVTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEALEKQEAEAGQVIQTFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ A E++ RA++ L + I Sbjct: 363 DKLDVDEDVAGILVDEGFTTLEEVAYVPLEEMTSIDGFDEDIAEELRARAKDALLTLAIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ +E+L ++ G+D + L GI TMEDLA VD+L+ Sbjct: 423 SEEELGAQEPAEDLLTMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIE--------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR W E+E Sbjct: 474 --------DMTEERAGELIMTARAP--WFEEE 495 >gi|332992817|gb|AEF02872.1| transcription elongation factor NusA [Alteromonas sp. SN2] Length = 497 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 314/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGDIEVRVSIDRTSGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++ + EN +I+L A+ +P + +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WLIIPDDQEQENPFAEITLSAAQVEEPELQLGDYVEDQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + E++DKVGE+++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDR Sbjct: 122 REAERAQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV EL E++DIV+W +SA FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENSAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + Sbjct: 302 DEDSHMMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNI 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE A +LV EGF +EE+A V SE+ +I+G DE+T E++ RAR +L Sbjct: 362 FTAGLDVDEEFAAMLVDEGFTTLEEVAYVPASELLAIDGLDEDTVEELRNRARAFLTTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E L + G+ + L GI +E+LA D++ E Sbjct: 422 LANEESLEGAEPTEALLGLEGMSKHVAYVLASRGITDLEELAEQGTDEISDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + ++I+ AR + W +E Sbjct: 476 -----------LDEATAGALIMAAR-NIVWFNEE 497 >gi|145637799|ref|ZP_01793448.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] gi|145268992|gb|EDK08946.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] Length = 495 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 195/512 (38%), Positives = 323/512 (63%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMITREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDLADIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|90409004|ref|ZP_01217134.1| transcription elongation factor NusA [Psychromonas sp. CNPT3] gi|90309889|gb|EAS38044.1| transcription elongation factor NusA [Psychromonas sp. CNPT3] Length = 500 Score = 573 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 199/515 (38%), Positives = 315/515 (61%), Gaps = 22/515 (4%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ ETG FR Sbjct: 2 NNKEILLVVEAVSNEKGLPREAIFEALESALAIATKKKYEMEIEVRVEIDRETGTFETFR 61 Query: 65 LLEV---VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V E+EN +++ + A P I IG + D +P + F R+ Q+AKQVI+QK Sbjct: 62 RWLVLAPDAEMENSCAEMTYEAAVYDQPEIQIGEFIEDDIPSVTFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + ++ ++ GE+++G VKR+ ++++DLG N++ VI RDE + REN RPGD Sbjct: 122 VREAERAQVVEQYIEQKGELVTGVVKRMTRDSILLDLGGNAEAVIFRDEMLPRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +YDVR E RG Q+ ++RT P+ +++LF +EVPEI ++ + A +RDPGSRAK+A Sbjct: 182 RLRGLLYDVRPEARGAQLFMTRTQPEMLIELFRLEVPEIAEEMIDLMAAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQA+ +EL E++DI++W +SA F INA+ PA V +V Sbjct: 242 VKSNDQRIDPIGACVGMRGARVQAISSELGGERVDIILWDDNSAQFAINAMSPAEVVSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E L+ AIGR GQN+RLASQLTGW ++++T + Q + + Sbjct: 302 VDEDSHSMDIAVEEENLAQAIGRNGQNIRLASQLTGWELNVMTVAQLQEKHQAEADSVIG 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+ +D A +LV EGF +EE+A V ++E+ I+G DE E++ RA+ L Sbjct: 362 VFTKALEIDADFAAVLVDEGFTSLEEIAYVPVTELLEIDGLDENMVDELRTRAKNVLATK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ I +E+L ++ G+D+ + GI T+EDLA +VDDL+ E Sbjct: 422 ALAAEENIEGAKPAEDLLALEGLDAHLAYVFASKGIITLEDLAEQAVDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ ++I+ AR + W E Sbjct: 477 ------------LNEEKAGTLIMAAR-NICWFSNE 498 >gi|68250159|ref|YP_249271.1| transcription elongation factor NusA [Haemophilus influenzae 86-028NP] gi|145629346|ref|ZP_01785145.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|145638849|ref|ZP_01794457.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|68058358|gb|AAX88611.1| transcription elongation protein NusA [Haemophilus influenzae 86-028NP] gi|144978849|gb|EDJ88572.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|145271821|gb|EDK11730.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|309750830|gb|ADO80814.1| Transcription elongation factor NusA [Haemophilus influenzae R2866] Length = 495 Score = 573 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 196/512 (38%), Positives = 324/512 (63%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|167035704|ref|YP_001670935.1| transcription elongation factor NusA [Pseudomonas putida GB-1] gi|325276164|ref|ZP_08141969.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51] gi|166862192|gb|ABZ00600.1| NusA antitermination factor [Pseudomonas putida GB-1] gi|324098701|gb|EGB96742.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51] Length = 493 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 319/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E +++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+ Sbjct: 122 EAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F Sbjct: 302 EDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|1075364|pir||D64114 transcription termination-antitermination factor nusA - Haemophilus influenzae (strain Rd KW20) Length = 507 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 195/512 (38%), Positives = 323/512 (63%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 14 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 73 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 74 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 133 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 134 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRG 193 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 194 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 253 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 254 DKRIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 313 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 314 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 373 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 374 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 433 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 434 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 485 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 486 ---------LTAEQAADLIMAAR-NICWFGEE 507 >gi|145630836|ref|ZP_01786614.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|145633248|ref|ZP_01788979.1| transcription elongation factor NusA [Haemophilus influenzae 3655] gi|145634372|ref|ZP_01790082.1| transcription elongation factor NusA [Haemophilus influenzae PittAA] gi|145641320|ref|ZP_01796899.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|148825866|ref|YP_001290619.1| transcription elongation factor NusA [Haemophilus influenzae PittEE] gi|229845094|ref|ZP_04465229.1| transcription elongation factor NusA [Haemophilus influenzae 6P18H1] gi|229846821|ref|ZP_04466928.1| transcription elongation factor NusA [Haemophilus influenzae 7P49H1] gi|144983718|gb|EDJ91178.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|144986094|gb|EDJ92684.1| transcription elongation factor NusA [Haemophilus influenzae 3655] gi|145268352|gb|EDK08346.1| transcription elongation factor NusA [Haemophilus influenzae PittAA] gi|145273863|gb|EDK13730.1| transcription elongation factor NusA [Haemophilus influenzae 22.4-21] gi|148716026|gb|ABQ98236.1| transcription elongation factor NusA [Haemophilus influenzae PittEE] gi|229810310|gb|EEP46029.1| transcription elongation factor NusA [Haemophilus influenzae 7P49H1] gi|229811930|gb|EEP47624.1| transcription elongation factor NusA [Haemophilus influenzae 6P18H1] gi|309973011|gb|ADO96212.1| Transcription elongation factor NusA [Haemophilus influenzae R2846] Length = 495 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 195/512 (38%), Positives = 323/512 (63%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDLADIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|325578298|ref|ZP_08148433.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392] gi|325160034|gb|EGC72163.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392] Length = 495 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 200/512 (39%), Positives = 321/512 (62%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +++L+ A+ DP+I +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEMTLEAAQFEDPNIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+ + G+I++GTVK+V ++I+DLG ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+ Sbjct: 182 VLYKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM Sbjct: 302 NHSMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMD 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 + +DE A +LV EGF +EE+A V +SE+++I+G DE+ E+QGRA++ + Sbjct: 362 KLGLDEEFAQILVDEGFTSLEEVAYVPVSELSAIDGLEDEDLIEELQGRAKDAITAAAAA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLADIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q I+ AR + W +E Sbjct: 474 ---------LTAEQAADFIMAAR-NICWFSEE 495 >gi|33592374|ref|NP_880018.1| transcription elongation factor NusA [Bordetella pertussis Tohama I] gi|33602223|ref|NP_889783.1| transcription elongation factor NusA [Bordetella bronchiseptica RB50] gi|33572019|emb|CAE41542.1| N utilization substance protein A [Bordetella pertussis Tohama I] gi|33576661|emb|CAE33739.1| N utilization substance protein A [Bordetella bronchiseptica RB50] gi|332381790|gb|AEE66637.1| transcription elongation factor NusA [Bordetella pertussis CS] Length = 492 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 313/511 (61%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + GI ++ L E + T +DLA S D+L + Sbjct: 424 EER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W ++E Sbjct: 471 -------GLQEEEASDLIMRARAH--WFDEE 492 >gi|311104987|ref|YP_003977840.1| transcription elongation protein NusA [Achromobacter xylosoxidans A8] gi|310759676|gb|ADP15125.1| transcription elongation protein NusA [Achromobacter xylosoxidans A8] Length = 492 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 309/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ +TGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRDTGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPGIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGESIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRATFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGMTPELAAKLAERQVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492 >gi|296135767|ref|YP_003643009.1| transcription termination factor NusA [Thiomonas intermedia K12] gi|294339930|emb|CAZ88293.1| transcription pausing; L factor [Thiomonas sp. 3As] gi|295795889|gb|ADG30679.1| transcription termination factor NusA [Thiomonas intermedia K12] Length = 492 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 325/509 (63%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++DRDVV + ++ A + LY +D+RV+I+ TG+ FR Sbjct: 4 EILMLVDALAREKNVDRDVVFGAVEAALASATKRLYEGEADVRVQIDRNTGEYESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I++G + +P+ + FGR+ Q+AKQVI+QK+R+ Sbjct: 64 VVPDEAGLQLPDSEILLFEAREQIPDIEVGDYIEEPIESIAFGRIGAQAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F + +I +G+VKR++ G++I++ G D +RR + I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLARNDKIFNGSVKRLDKGDLIIESGKVDARLRRSDLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I + R RGPQ+ +SRT P+FM++LF +EVPEI G++++K+ +R+PG RAK+AV S Sbjct: 184 VITKIDRTARGPQIEISRTAPEFMIELFRLEVPEIEQGLMEIKSCAREPGVRAKIAVVSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DRRVDPIGTCVGIRGSRVTAVTNELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E L+LAIGR GQNVRLAS+LTGW I+I++ EE ++ + F++ Sbjct: 304 KHAMDVAVDEENLALAIGRTGQNVRLASELTGWKINILSAEESDARNTQETQKMRSLFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+AEGF +EELA V I+E+ IE FDE+T E++ RAR L +I Sbjct: 364 KLDVDQEVADILIAEGFTSLEELAYVPINEMLEIEAFDEDTVNELRERARNALLTQEIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E+ + L ++ G+ + L E G+ T++DL + D+L G Sbjct: 424 EQKLDEVDPA--LKALDGLSADELALLAEAGVLTLDDLGDLATDELTGI----------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L T + + +I+ AR W + Sbjct: 471 ------LRTDEARAADLILKARAH--WFD 491 >gi|33596482|ref|NP_884125.1| transcription elongation factor NusA [Bordetella parapertussis 12822] gi|33566251|emb|CAE37162.1| N utilization substance protein A [Bordetella parapertussis] Length = 492 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 313/511 (61%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG Q++LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQLILSRTSPEFIRQLFENEVPEIEQGLLEIKATARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + GI ++ L E + T +DLA S D+L + Sbjct: 424 EER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W ++E Sbjct: 471 -------GLQEEEASDLIMRARAH--WFDEE 492 >gi|229592637|ref|YP_002874756.1| transcription elongation factor NusA [Pseudomonas fluorescens SBW25] gi|229364503|emb|CAY52353.1| transcription termination factor [Pseudomonas fluorescens SBW25] Length = 493 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 210/511 (41%), Positives = 319/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEE +++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEEADLDDPAIETWPSKVAETHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+T E++ RA++ L I Sbjct: 362 IDELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|26991396|ref|NP_746821.1| transcription elongation factor NusA [Pseudomonas putida KT2440] gi|148549780|ref|YP_001269882.1| transcription elongation factor NusA [Pseudomonas putida F1] gi|24986465|gb|AAN70285.1|AE016669_3 N utilization substance protein A [Pseudomonas putida KT2440] gi|148513838|gb|ABQ80698.1| NusA antitermination factor [Pseudomonas putida F1] gi|313500621|gb|ADR61987.1| NusA [Pseudomonas putida BIRD-1] Length = 493 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 320/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E +++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+ Sbjct: 122 EAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F Sbjct: 302 EDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|224825864|ref|ZP_03698968.1| NusA antitermination factor [Lutiella nitroferrum 2002] gi|224602088|gb|EEG08267.1| NusA antitermination factor [Lutiella nitroferrum 2002] Length = 493 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 221/511 (43%), Positives = 334/511 (65%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L + DA+A EKS+ +DVV + + ++ A + + DIRVEI+ TG FR Sbjct: 4 EILLLVDALASEKSVSKDVVFTALELALASATKKKFNQDDVDIRVEIDRHTGQYHTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ +E +I L AR+RDPSI++G V+ +P+ ++FGR+ Q+AKQVI+QK+R+ Sbjct: 64 TVVEDDMLEFDDKEIELADARERDPSIEVGAVIEEPMEAVEFGRIGAQAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ EF + ++SGTVKR+E GN I++ G + V+ R++ I +ENLR GDRVK+ Sbjct: 124 AEREQLLSEFLQRREHLVSGTVKRIERGNAIIECGKLEAVLPREQMIPKENLRVGDRVKA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R RGPQ++LSRT +F++KLF +EVPEI G++++K +RDPG RAK+AV ++ Sbjct: 184 YLMRIDRLGRGPQLVLSRTSREFLIKLFELEVPEIEEGLLEIKEAARDPGLRAKIAVKAN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP G C+GMRGSRVQ+V EL E++DIV+W+P+ A FVINAL PA V ++++DED Sbjct: 244 DPRIDPQGTCIGMRGSRVQSVTQELAGERVDIVLWAPEPAQFVINALSPAEVNRIMIDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V ++QL+LAIGR GQNVRLA++LTGW ++I+T E Q++ + FM+ Sbjct: 304 NHAMDVVVEEDQLALAIGRSGQNVRLAAELTGWYLNIMTVTEAEEKHQEEDAALRETFMK 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE A LV EGFA +EE+A V I+E+ IEGF+EE E++ RAR+ L + I Sbjct: 364 HLGVDEATAMTLVQEGFATLEEVAYVPIAEMLEIEGFEEEQVNELRSRARDALLTLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGI-DSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++K+ VS++L I G+ D+ + L ENG+ T ++LA +VDDL+ + Sbjct: 424 EEKVE--SVSDDLKGIEGLEDADLVRKLAENGVTTRDELADLAVDDLVDMT--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G + ++I+ AR W + Sbjct: 473 --------GMEAEAARAIIMKAREH--WFAQ 493 >gi|82702986|ref|YP_412552.1| transcription elongation factor NusA [Nitrosospira multiformis ATCC 25196] gi|82411051|gb|ABB75160.1| NusA antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 495 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 209/513 (40%), Positives = 331/513 (64%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++++++V + + ++ A + + +D+RV I+ +TGD R + Sbjct: 4 EVLLLVDALAREKNVEKNIVFAALELALASATKKRFNEDADVRVSIDHQTGDYQSLRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ QISL A ++P I + + + L P++FGR+ Q+AKQVI QK+R+A Sbjct: 64 VVADDAVEDPARQISLSEAFRQNPEIQLDEYIEEILEPVEFGRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ +++GT+KR+E GN I++ G + V+ RD+ I +ENLR GDRV++Y Sbjct: 124 EREQILNDFLERKEYMVTGTIKRMERGNAIIESGRVEAVLPRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ + R RGPQ++LSR P+F++KLF +EVPEI G++++K +RDPGSRAK+AV S+D Sbjct: 184 LHRIDRTTRGPQLILSRIVPEFLIKLFELEVPEIEEGLLEIKVAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G CVGMRGSRVQAV EL E++DI++WS D ATFVINAL PA ++ +++DE+ Sbjct: 244 QRVDPIGTCVGMRGSRVQAVTGELAGERVDIILWSDDPATFVINALAPAEISSILVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++F+ FM+ Sbjct: 304 HSMDIVVDEGNLAQAIGRGGQNVRLASELTGWELNIMTMEESQAKNEEEFSVLRHLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L EGF +EE+A V +SE+ IE FDE+T E++ RAR L I + Sbjct: 364 LDVDEEVADILAQEGFTTLEEVAYVPLSEMMEIEAFDEQTVNELRNRARNALLTEAIVSE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ ++E+L ++ G+DS+ L G+ T EDLA +VDDL+ E Sbjct: 424 EKVE--HIAEDLLALEGMDSQTARELAAKGVSTQEDLADLAVDDLVEMVE---------- 471 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++ +I+ AR W A Sbjct: 472 -------MDTERARQLIMAARAP--WFAPADRA 495 >gi|227357076|ref|ZP_03841446.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis ATCC 29906] gi|227162768|gb|EEI47731.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis ATCC 29906] Length = 502 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 209/515 (40%), Positives = 321/515 (62%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++++GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A +LV EGF+ +EEL V I E+ +I+G DEET ++ RA+ L Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDGLDEETVEALRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDID--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR + W Sbjct: 479 --------------GLNSERAGELIMAAR-NICWF 498 >gi|332141181|ref|YP_004426919.1| transcription elongation factor NusA [Alteromonas macleodii str. 'Deep ecotype'] gi|327551203|gb|AEA97921.1| transcription elongation factor NusA [Alteromonas macleodii str. 'Deep ecotype'] Length = 498 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 315/515 (61%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKV Sbjct: 62 WLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + E++DKVGE+++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDR Sbjct: 122 REAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + Sbjct: 302 DEDSNNMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++DE A +LV EGF +EE+A V SE+ ++EG DE+ E++ RAR +L Sbjct: 362 FTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEDMVEELRNRARAFLTTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E L ++ G+ + L G+ +E+LA DD+ E Sbjct: 422 LANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVIDLEELAEQGTDDISDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W +E+ Sbjct: 476 -----------LDEEKAGELIMAAR-NIVWFSEEE 498 >gi|90412484|ref|ZP_01220487.1| transcription elongation factor NusA [Photobacterium profundum 3TCK] gi|90326521|gb|EAS42927.1| transcription elongation factor NusA [Photobacterium profundum 3TCK] Length = 495 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 196/511 (38%), Positives = 315/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WIAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F D GE+I+G VK+V V++DLGN ++ VI+RD+ + REN R GDR++ Sbjct: 122 EREQIVEQFMDNEGELITGIVKKVNRDAVVIDLGNNAEAVIQRDDQLPRENFRSGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ Q++ F + Sbjct: 302 NHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHQEEAQVSIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ RA+ L + + Sbjct: 362 HLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +L + G++ ++ L GI T+EDLA DDLL E Sbjct: 422 EESFEGVEPAADLLGLDGLERELAFKLAAKGICTLEDLADQGTDDLLDLEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W E Sbjct: 473 --------MDEAKAGELIMAAR-NICWFSDE 494 >gi|109898014|ref|YP_661269.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c] gi|109700295|gb|ABG40215.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c] Length = 497 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 317/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVAIDRITGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN ++++ A+ +P I +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WMVIADDQKQENPFAEMTISAAQIDEPDIQLGDYVEDQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + E++++VG++++GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDR Sbjct: 122 REAERAQVMAEYEERVGDLVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFVSRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + ++ ++ Sbjct: 302 DEDNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNNKHDEENSKVLAV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L Sbjct: 362 FVNGLDIDEEFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVDDLRSRARAALTTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + EEL S+ G++ + L GI +E LA VD++ E Sbjct: 422 LANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 476 -----------LDEEKAGQLIMAAR-NIVWFNEE 497 >gi|332306994|ref|YP_004434845.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174323|gb|AEE23577.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 497 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 204/514 (39%), Positives = 318/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVSIDRVTGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN +++L A+ +P I +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WMVIADDQKQENPFAEMTLSAAQIDEPDIQLGEYVEDQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + E++++VG++I+GTVK+V N+I+DLGN ++GVI RD+ + RE RPGDR Sbjct: 122 REAERAQVMAEYEERVGDLITGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + +++ ++ Sbjct: 302 DEDNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNSKHEEENSKVLAV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L Sbjct: 362 FVNGLDIDEDFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVEDLRSRARAALTTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + EEL S+ G++ + L GI +E LA VD++ E Sbjct: 422 LANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 476 -----------LDEEKAGQLIMAAR-NIVWFNEE 497 >gi|28871625|ref|NP_794244.1| N utilization substance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|213966648|ref|ZP_03394799.1| N utilization substance protein A [Pseudomonas syringae pv. tomato T1] gi|301383158|ref|ZP_07231576.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato Max13] gi|302063407|ref|ZP_07254948.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato K40] gi|302133780|ref|ZP_07259770.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854877|gb|AAO57939.1| N utilization substance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|213928498|gb|EEB62042.1| N utilization substance protein A [Pseudomonas syringae pv. tomato T1] gi|330877234|gb|EGH11383.1| transcription elongation factor NusA [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016647|gb|EGH96703.1| transcription elongation factor NusA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 493 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|330969650|gb|EGH69716.1| transcription elongation factor NusA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 493 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKVAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|66047408|ref|YP_237249.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae B728a] gi|289676023|ref|ZP_06496913.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae FF5] gi|302185431|ref|ZP_07262104.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae 642] gi|63258115|gb|AAY39211.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Pseudomonas syringae pv. syringae B728a] gi|330937945|gb|EGH41732.1| transcription elongation factor NusA [Pseudomonas syringae pv. pisi str. 1704B] Length = 493 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|32033691|ref|ZP_00133986.1| COG0195: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208120|ref|YP_001053345.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae L20] gi|126096912|gb|ABN73740.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 493 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 317/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WIVVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S Sbjct: 182 VLYAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ Sbjct: 302 KHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVS 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + Sbjct: 362 ALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 422 EEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 ---------LSADKASELIMAAR-QICWFS 493 >gi|254447046|ref|ZP_05060513.1| NusA antitermination factor [gamma proteobacterium HTCC5015] gi|198263185|gb|EDY87463.1| NusA antitermination factor [gamma proteobacterium HTCC5015] Length = 499 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 214/515 (41%), Positives = 325/515 (63%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAV+ EK +D+DV+ + ++ A R + D RV IN E G FR Sbjct: 3 NKEILLVADAVSNEKGVDKDVIFEALEIALATATRKKHPDDIDARVSINREDGSYETFRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ +EN ++ A D DPS +G V +P+ +D+GR+A Q+AKQVI+QKV Sbjct: 63 WLVIEDDLVMENVDAELRHMDAIDIDPSYKVGDYVEEPIESVDYGRIAAQTAKQVIVQKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + EF+D+ GE++ G VKRVE GNV VDLG N++G I R+E I RE++RPGDR Sbjct: 123 REAERMQVVEEFQDREGELVMGLVKRVERGNVYVDLGGNAEGFIPREEMIPRESVRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ + +VR E RGPQ+ +SRT PQF+++LF +EVPEI G++ + + SRDPG RAK+AV Sbjct: 183 IRGLLREVRSELRGPQLFVSRTDPQFLIELFKIEVPEIGQGMIDILSASRDPGVRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D +DPVGACVGMRGSRVQ+V EL E++DI+++ + A FVINA+ PA V +V+ Sbjct: 243 RSNDPRLDPVGACVGMRGSRVQSVSNELSGERVDIILFDDNPAQFVINAMSPAEVVSIVV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V E+LS AIGR GQN+RLAS+LT W ++++ EE + +++ ++ + Sbjct: 303 DEDNNSMDLAVTNEKLSQAIGRGGQNIRLASELTDWQLNVMDEESYAAKNEEEAHKYVEV 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF +EE+A V ++E IE FD+ E++ RAR+ L Sbjct: 363 FMEQLDVDEEVATILVQEGFTSIEEVAYVPMAEFQEIEEFDDGIIEELRNRARDALLTKA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ + ++L + +D ++ AL G+ TME+LA +VDDL+ Sbjct: 423 ILNEES--DAQPEQDLLDMETMDEEMAYALAAIGVTTMEELAEQAVDDLMVID------- 473 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ ++I+ AR W + + Sbjct: 474 ----------DMDEERASALIMKAREP--WFAEAE 496 >gi|165976050|ref|YP_001651643.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149948|ref|YP_001968473.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249647|ref|ZP_07335852.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253712|ref|ZP_07339849.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247608|ref|ZP_07529651.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249837|ref|ZP_07531813.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252189|ref|ZP_07534087.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263276|ref|ZP_07544894.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876151|gb|ABY69199.1| transcription termination-antitermination factor, N utilization substance protein A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915079|gb|ACE61331.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647437|gb|EFL77656.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651459|gb|EFL81610.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855878|gb|EFM88038.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858139|gb|EFM90219.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860333|gb|EFM92348.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871338|gb|EFN03064.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 493 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 318/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WIVVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S Sbjct: 182 VLYAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ Sbjct: 302 KHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVS 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + Sbjct: 362 ALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 422 EEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 ---------LSADKASELIMAAR-QICWFS 493 >gi|307245494|ref|ZP_07527581.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254448|ref|ZP_07536285.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258907|ref|ZP_07540638.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853553|gb|EFM85771.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862589|gb|EFM94546.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866931|gb|EFM98788.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 493 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 316/510 (61%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WIVVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S Sbjct: 182 VLYAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ Sbjct: 302 KHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVS 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + Sbjct: 362 ALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G+D I L E GI T+E LA + DDL E Sbjct: 422 EEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEGLAEQATDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 ---------LSADKASELIMAAR-QICWFS 493 >gi|322514415|ref|ZP_08067458.1| N utilization substance A [Actinobacillus ureae ATCC 25976] gi|322119663|gb|EFX91721.1| N utilization substance A [Actinobacillus ureae ATCC 25976] Length = 493 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 197/510 (38%), Positives = 317/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WIVVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFNRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN R GDRV+ Sbjct: 122 ERNKVIDQFRSQLNTIITATVKKVNRDQIILDLGNQAEAVIVREDMLPRENFRLGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S Sbjct: 182 VLYAIKPESKGPQLFVTRAKPIMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ Sbjct: 302 KHAMDIAVESKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVIDLFVT 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 ++ +D+ A +LV EGF+ +EELA + +SE+ +I+G DE+ E+Q RA+ + + Sbjct: 362 SLEIDQEFAQILVDEGFSSLEELAFIPVSELTAIDGLEDEDLVEELQTRAKNVITAKALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 422 EEEALQQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 ---------LSADKASELIMAAR-QICWFS 493 >gi|16273197|ref|NP_439435.1| transcription elongation factor NusA [Haemophilus influenzae Rd KW20] gi|260581405|ref|ZP_05849219.1| transcription termination factor NusA [Haemophilus influenzae RdAW] gi|260582501|ref|ZP_05850292.1| transcription termination factor NusA [Haemophilus influenzae NT127] gi|1171872|sp|P43915|NUSA_HAEIN RecName: Full=Transcription elongation protein nusA gi|1574741|gb|AAC22932.1| N utilization substance protein A (nusA) [Haemophilus influenzae Rd KW20] gi|260091947|gb|EEW75896.1| transcription termination factor NusA [Haemophilus influenzae RdAW] gi|260094481|gb|EEW78378.1| transcription termination factor NusA [Haemophilus influenzae NT127] Length = 495 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 195/512 (38%), Positives = 323/512 (63%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|170719906|ref|YP_001747594.1| transcription elongation factor NusA [Pseudomonas putida W619] gi|169757909|gb|ACA71225.1| NusA antitermination factor [Pseudomonas putida W619] Length = 493 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 319/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E +++ + L + P +G V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDEADLDDPAIETWLAKIHETHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+ Sbjct: 122 EAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F Sbjct: 302 EDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|268592826|ref|ZP_06127047.1| L factor [Providencia rettgeri DSM 1131] gi|291311611|gb|EFE52064.1| L factor [Providencia rettgeri DSM 1131] Length = 502 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 208/515 (40%), Positives = 320/515 (62%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTREITLEAAQYEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLEGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ ++I+ AR + W Sbjct: 479 --------------GLDDEKAGTLIMAAR-NICWF 498 >gi|330958050|gb|EGH58310.1| transcription elongation factor NusA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 493 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRM 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|104780027|ref|YP_606525.1| transcription elongation factor NusA [Pseudomonas entomophila L48] gi|95109014|emb|CAK13710.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Pseudomonas entomophila L48] Length = 493 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 318/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E +++ + L +D P IG V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDENDLDDPAIETWLSKIQDTHPDAKIGDVIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + ++++VGEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+ Sbjct: 122 EAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLVLSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLT WT++++TE++ +Q + + + F Sbjct: 302 EDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTAWTLNVMTEKDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +++L S+ G+D + L G+ EDLA S Sbjct: 422 ATEEKLADAHPADDLLSLEGMDKDLAAELAVRGVVNREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|330888659|gb|EGH21320.1| transcription elongation factor NusA [Pseudomonas syringae pv. mori str. 301020] Length = 493 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSR+K+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRSKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|307261095|ref|ZP_07542774.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869227|gb|EFN01025.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 493 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 317/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WIVVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S Sbjct: 182 VLYAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ Sbjct: 302 KHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVS 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + Sbjct: 362 ALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 422 EEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 ---------LSADKASELIMAAR-QICWFS 493 >gi|71734581|ref|YP_276312.1| transcription elongation factor NusA [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482262|ref|ZP_05636303.1| transcription elongation factor NusA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289646960|ref|ZP_06478303.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. 2250] gi|298488455|ref|ZP_07006486.1| Transcription termination protein NusA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71555134|gb|AAZ34345.1| N utilization substance protein A [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157080|gb|EFH98169.1| Transcription termination protein NusA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330987054|gb|EGH85157.1| transcription elongation factor NusA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011498|gb|EGH91554.1| transcription elongation factor NusA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 493 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|289624601|ref|ZP_06457555.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868245|gb|EGH02954.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 493 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIHAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|77457005|ref|YP_346510.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf0-1] gi|77381008|gb|ABA72521.1| transcription termination factor [Pseudomonas fluorescens Pf0-1] Length = 493 Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 209/511 (40%), Positives = 317/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEE +++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEENDLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|121594900|ref|YP_986796.1| NusA antitermination factor [Acidovorax sp. JS42] gi|120606980|gb|ABM42720.1| NusA antitermination factor [Acidovorax sp. JS42] Length = 494 Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 323/514 (62%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIERDSGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L + G+ ++ L E G+ T +DLA ++D+L + Sbjct: 422 VREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDELTELT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G + ++I+ AR W ++ Sbjct: 472 ---------GQSAEDATALIMKAREH--WFTGQE 494 >gi|320322529|gb|EFW78622.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. B076] Length = 493 Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|217970108|ref|YP_002355342.1| transcription elongation factor NusA [Thauera sp. MZ1T] gi|217507435|gb|ACK54446.1| NusA antitermination factor [Thauera sp. MZ1T] Length = 491 Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 333/509 (65%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V S + ++ A + +D+ V I+ ++GD + R Sbjct: 4 EILLLVDALAREKNVAKDIVFSALETALASATKKRIHDDADVVVSIDRDSGDYTSKRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ + IG + + L P+DFGR+ Q+AKQVI+QK+R+A Sbjct: 64 VMLDEEVANDEAEMGIIDARELRADVQIGDYIEEELEPIDFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++ Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRMEAVLPRDQQIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RD G RAK+AV S+D Sbjct: 184 LLRIDRGARGPQLVLSRTAPEFLMKLFELEVPEIEDGLLELKACARDAGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FV+ AL+PA V +V+DE+ Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSQDPAQFVVAALQPAEVVSIVVDEES 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + ++ FM+ Sbjct: 304 HAMDVVVDENNLAIAIGRSGQNVKLASELTGWTINLMSEQESAEKTAQEQQGLRALFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF+ +EE+A V +SE+ IE FDE+T E++ RAR L I + Sbjct: 364 LDVDEEVADILIEEGFSSLEEVAYVPLSEMLEIEAFDEDTVNELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ VS++L + G+D + L + GI+T +DLA +VD+L+ + Sbjct: 424 EQLE--KVSDDLLGLEGMDKSLAATLAQQGIRTRDDLADLAVDELVEMA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ +++I AR W E+ Sbjct: 471 ------GIDEERAKALISVARAH--WFEE 491 >gi|297537315|ref|YP_003673084.1| transcription termination factor NusA [Methylotenera sp. 301] gi|297256662|gb|ADI28507.1| transcription termination factor NusA [Methylotenera sp. 301] Length = 488 Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 207/507 (40%), Positives = 333/507 (65%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RV I+ E+G+ FR + Sbjct: 4 EILLLVDALAHEKNVSKEVIFTALELALASATKKKHHDDADVRVSIDRESGEYETFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE +EN QI + + +++G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 YVEYDLLENSAYQIDEES--EHAKGLNVGDYYEEPLESIEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV+++ Sbjct: 122 EREQILEDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P F+V+LF +EVPEI G+++++A +RDPG R+K+AV S+D Sbjct: 182 LSRIERGGRGPQLILSRITPDFLVRLFELEVPEIEEGLLEIRAAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRIDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q +F +Q FM Sbjct: 302 HSMDVVVDEEQLALAIGRNGQNVRLASELTGWTLNILTVDQAAQKNQDEFAGVSQLFMDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDAEVAEILVQEGFSTLEEIAYVPLAEMNEIEAFDEDTIEELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E SE+L ++ G+D++ L G+ TM+DLA +VD+L + Sbjct: 422 EKVEEA--SEDLLAMEGMDAETAHLLASKGVATMDDLAELAVDELEELT----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 469 ------GMDAERAKTLIMTARAP--WF 487 >gi|167950226|ref|ZP_02537300.1| transcription elongation factor NusA [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589422|gb|ABG77220.1| N utilization substance protein A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 497 Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 211/517 (40%), Positives = 322/517 (62%), Gaps = 27/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK +++ ++ + ++ A R G +RVEI+ +GD FR Sbjct: 2 SKEILLVVDAVSNEKGVEKVIIFEAIEAALASATRKKNGDDILVRVEIDRTSGDYESFRR 61 Query: 66 LEVVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 EVVE E + QI A+++ P I IG + + + ++FGR+A Q+AKQVI+Q Sbjct: 62 WEVVEDYSSDEPDAPLRQIIFDAAKEQQPDIQIGDFIEEEIDSIEFGRIAAQAAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 KVREAER + ++D+ GE+++G VKRV+ GNV +DLG N++ I R+ I +E +R G Sbjct: 122 KVREAERAKVVAAYEDRKGELVTGVVKRVDRGNVFLDLGGNAEAFIGREHMIPKEAVRVG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ Y+Y++R E RGPQ+ +SRT P+ +++LF +EVPE+ G+++++ +RD G RAK+ Sbjct: 182 DRIRGYLYEIRSEVRGPQLFVSRTMPELLIELFKLEVPEVGEGLIEIRGAARDAGLRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + DS IDPVGACVGMRGSRVQAV EL E++DI++W+ + A FVI+A+ PA V + Sbjct: 242 AVKALDSRIDPVGACVGMRGSRVQAVSNELNGERVDIILWNDNPAQFVIDAMSPADVVSI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++V V +E LS AIGR GQNVRLASQLTGW ++++ E + + ++ Sbjct: 302 VVDEDRHAMDVAVSEENLSQAIGRGGQNVRLASQLTGWELNVMDEAQAAEKSDQESRGFI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ + VDE +A +LV EGF V+E+A V I E+ IE FD++ E++ RA++ L Sbjct: 362 EAFMEHLGVDEDVATILVQEGFTSVDEVAYVPIEEMLGIEEFDDDLVDELRNRAKDVLLT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I ++ E +E+L ++ G+D + L +GI TMEDLA SVDDL+ Sbjct: 422 KAIAKEEAFAE--PAEDLLTMDGMDKDLAYLLASHGIATMEDLAEQSVDDLMDVE----- 474 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +II AR W E + Sbjct: 475 ------------GMDEERAGKLIITARAP--WFEDAE 497 >gi|329123362|ref|ZP_08251927.1| N utilization substance A [Haemophilus aegyptius ATCC 11116] gi|327471362|gb|EGF16814.1| N utilization substance A [Haemophilus aegyptius ATCC 11116] Length = 507 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 194/512 (37%), Positives = 322/512 (62%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 14 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 73 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 74 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 133 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ Sbjct: 134 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRG 193 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 194 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 253 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 254 DKRIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 313 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 314 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 373 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 374 ALKLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 433 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 434 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 485 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 486 ---------LTAEQAADLIMAAR-NICWFGEE 507 >gi|317402909|gb|EFV83450.1| N utilization substance protein A [Achromobacter xylosoxidans C54] Length = 492 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 311/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAVEIVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ I++ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIIETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRATFMN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGVTPELAAKLAERQVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492 >gi|226329684|ref|ZP_03805202.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198] gi|225202870|gb|EEG85224.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198] Length = 502 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 209/515 (40%), Positives = 322/515 (62%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPSI++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEDPSIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++++GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRLRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A +LV EGF+ +EEL V ISE+ +I+G DE+T ++ RA+ L Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPISELLAIDGLDEDTVEALRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGLERSLAFDLAARGICTLEDLAEQGIDDLTDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR + W Sbjct: 479 --------------GLNSERAGELIMAAR-NICWF 498 >gi|320330002|gb|EFW85989.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. race 4] gi|330875221|gb|EGH09370.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. race 4] Length = 493 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLGGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|239815725|ref|YP_002944635.1| NusA antitermination factor [Variovorax paradoxus S110] gi|239802302|gb|ACS19369.1| NusA antitermination factor [Variovorax paradoxus S110] Length = 494 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 324/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR Sbjct: 2 NREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A++ P I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEEMPDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQASETDASRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L++EGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS+ L + G+D ++ L E G+ T +DLA +VD+L + Sbjct: 422 AKEEGVE--TVSQNLRDLEGLDPELIPKLAEAGVHTRDDLADLAVDELTEIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G D +++I+ AR W ++ Sbjct: 472 ---------GHSADDAKALILKAREH--WFAGQE 494 >gi|124267111|ref|YP_001021115.1| NusA antitermination factor [Methylibium petroleiphilum PM1] gi|124259886|gb|ABM94880.1| NusA antitermination factor [Methylibium petroleiphilum PM1] Length = 492 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 210/511 (41%), Positives = 327/511 (63%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL DA+A EKS++RDVV + ++ A++ L+G DIRV ++ +TG+ FR Sbjct: 2 NRDLLDFVDAIAREKSVERDVVFEAVEAALASASKKLHGGEVDIRVSVDRDTGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L ARDR I+ G + + + + GR+ Q+AKQVI+QKV Sbjct: 62 WLVVPDSAGLQNADAEELLTDARDRIEDIEEGDYIEEAIESVSIGRIGAQAAKQVILQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F + +I GTVKR++ G+++V+ G +G ++R E I++ENLR GDRV Sbjct: 122 RDAEREQLLNDFLSRGDKIFVGTVKRLDKGDLVVESGRVEGRLKRSELIAKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++YI +V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAYITEVDTTQRGPQIMLSRSAPGFMVELFRHEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSADPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I++ EE + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMSAEESQDKQATESESIRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ ++VD +A +L+AEGF +EE+A V + E+ +E FDE+T E++ RA++ L ++I Sbjct: 362 VEKLDVDAEVADILIAEGFTSLEEVAYVPLQEMLEMESFDEDTVHELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ VS++L + G+D+++ L E GI T +DLA +VD+L + Sbjct: 422 AQEEKLE--SVSQDLRDLEGLDAELIARLAEGGIHTRDDLADLAVDELTELT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +Q +++I+ AR W Sbjct: 472 ---------GVADEQAKALIMKAREH--WFT 491 >gi|330950306|gb|EGH50566.1| transcription elongation factor NusA [Pseudomonas syringae Cit 7] Length = 493 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 323/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ + ++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAHEFAVDQAQAKKPGAVAGDLIEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + V+E +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IEELQVEEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDCLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|262277759|ref|ZP_06055552.1| transcription termination factor [alpha proteobacterium HIMB114] gi|262224862|gb|EEY75321.1| transcription termination factor [alpha proteobacterium HIMB114] Length = 514 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 270/505 (53%), Positives = 368/505 (72%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL++IADAVA EKSID+D+VLS M +I+KAAR+ YG+ ++I V I+ ETG I L R Sbjct: 7 DSTELIRIADAVAAEKSIDKDLVLSSMETAIEKAARTRYGSENEIYVSIDRETGIIELGR 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L+VVE+V +ISL A+ +DPS +IGG + + LPP+DFGR+A Q+AKQVI ++R+ Sbjct: 67 KLKVVEKVLESHSEISLDEAKQKDPSAEIGGEIKEELPPIDFGRIAAQTAKQVISVQIRD 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDRQ+ EFKDKVGEI+SG VKR E+GN+IVDL S+ +IRR+E I RENL+ GDRVK+ Sbjct: 127 AERDRQFNEFKDKVGEILSGIVKRSEFGNIIVDLQKSEAIIRREELIPRENLKNGDRVKA 186 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y YDVRRE +GPQ+ LSR HPQF+ KLF EVPEIY G + +K+V+RDPGSRAK+ V S Sbjct: 187 YCYDVRRENKGPQIFLSRAHPQFLAKLFQQEVPEIYEGTISIKSVARDPGSRAKICVQSK 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DSSIDPVGACVGMRGSRVQ +V EL+ EKIDI+ W+ D + V++AL PA V KVVLD++ Sbjct: 247 DSSIDPVGACVGMRGSRVQTIVNELQGEKIDIINWTEDVGSLVVSALAPAEVMKVVLDQE 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R EV++ + LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F E + ++ Sbjct: 307 NRRAEVVIDENNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQSEFKENSSKLIK 366 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +D +A LLV+EGF ++++ + E I+GFDEETA E+Q RA+E+LE + + Sbjct: 367 ALEIDTTMAQLLVSEGFNTIKDINNANVDEFLKIDGFDEETAKELQDRAKEFLEEEEKEI 426 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K++ELG+ E+L + G+ + + LGE IKT++D A S D+++G + G EKF Sbjct: 427 ASKVQELGIEEDLANHKGLTLGMLLTLGEENIKTLKDFAELSTDEIVGGYDEIKGKREKF 486 Query: 485 DGFLSSLGTPKDQVESMIIHARYKM 509 DG L P+ E +I+ AR K+ Sbjct: 487 DGVLEEFNIPRKDAEDLIMRARKKV 511 >gi|312963084|ref|ZP_07777569.1| N utilization substance protein A [Pseudomonas fluorescens WH6] gi|311282595|gb|EFQ61191.1| N utilization substance protein A [Pseudomonas fluorescens WH6] Length = 493 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 209/511 (40%), Positives = 317/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEE +++ + P +G VV + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEEDDLDDPAIETWPSKVAQTHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|332528133|ref|ZP_08404164.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2] gi|332112704|gb|EGJ12497.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2] Length = 492 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 323/511 (63%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK++DRDVV + ++ A + L+G DIRV ++ ETG+ FR Sbjct: 2 NREMLMLVDAISREKTVDRDVVFGAVEAALASATKKLHGGEVDIRVAVDRETGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV ++N ++ L A+++ I++ + + + + GR+ Q+AKQVI+QK+ Sbjct: 62 WHVVPNEAGLQNADAEVLLFEAQEQIADIEVDDYIEESVDSVPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F + +I GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV Sbjct: 122 RDAEREQLLNDFLARGDKIFVGTVKRLDKGDIIVESGRVEGRLKRSEMIPKENLRSGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 +++I V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAFILGVDPTQRGPQIMLSRSAPGFMVELFGQEVPEIELGLLEIKSCARDPGSRAKIAVV 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RGSRV V TEL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDRRVDPIGTCVGVRGSRVNGVTTELAGERVDIVLWSEDPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATETESVRKIF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 VEKLDVDEEVADILIAEGFTSLEEVAYVPLQEMLEIEAFDEDTVQELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + + VS++L + G+ ++ L + G+ T +DLA +VD+L+ + Sbjct: 422 ERE--EKVEEVSQDLRDLEGLTPELIGKLSDGGVNTRDDLADLAVDELVEMT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + Q ++I+ AR W Sbjct: 472 ---------GVDETQARALIMKAREH--WFT 491 >gi|197287229|ref|YP_002153101.1| transcription elongation factor NusA [Proteus mirabilis HI4320] gi|194684716|emb|CAR46696.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis HI4320] Length = 502 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 208/515 (40%), Positives = 320/515 (62%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++++GEII+G VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A +LV EGF+ +EEL V I E+ +I+ DEET ++ RA+ L Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDSLDEETVEALRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDID--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR + W Sbjct: 479 --------------GLNSERAGELIMAAR-NICWF 498 >gi|212709946|ref|ZP_03318074.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM 30120] gi|212687458|gb|EEB46986.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM 30120] Length = 502 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 209/515 (40%), Positives = 320/515 (62%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTMPTREITLEAAQFEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 SIETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATHGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR + W Sbjct: 479 --------------GLNNEKAGELIMAAR-NICWF 498 >gi|330504828|ref|YP_004381697.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01] gi|328919114|gb|AEB59945.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01] Length = 493 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 318/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR Sbjct: 2 SKEVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F Sbjct: 302 EDAHAMDIAVGEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +++L + G+D + + L G+ T EDLA S Sbjct: 422 ANEEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|330895306|gb|EGH27644.1| transcription elongation factor NusA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 493 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 323/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ A GR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQASGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|332283701|ref|YP_004415612.1| transcription elongation protein [Pusillimonas sp. T7-7] gi|330427654|gb|AEC18988.1| transcription elongation protein [Pusillimonas sp. T7-7] Length = 494 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 318/511 (62%), Gaps = 24/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + +++ A + + +DIRV I+ +G+ FR Sbjct: 4 EILLLVDALAREKNVGREVVFGALENALASAMKKRFKEDADIRVTIDRMSGEHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I++G + + L P +FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDDAGLQEPDQQELLSDAQEIVPGIEVGEYIEEQLEPEEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ IISGTVKR++ G+ I++ G + + R ETI +EN+R GDR+++ Sbjct: 124 AEREQVLNDFLERGENIISGTVKRMDKGDAIIETGKIEARLPRSETIPKENIRIGDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 WVLKVDHTARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+W+ D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWAEDPAEFVIGALAPAHVDSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E L AIG RGQNVRLAS+LTGW I+I+T EE ++++ Q F+ Sbjct: 304 KHAMDVVVDAENLPKAIGARGQNVRLASELTGWQINIMTPEESQNRQEEERTGLRQAFIT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGLEEIAYVPLQELLEIEAFDEDTINELRTRARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++++ V+++L + G++ ++ L EN + T++DLA + D+L S Sbjct: 424 EERVQ--TVAQDLLEVEGMNPELVAKLAENEVLTLDDLAELATDELAEIS---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +D+ MI+ AR W ++E Sbjct: 472 -------GMSEDEASQMIMRARAH--WFDEE 493 >gi|301170017|emb|CBW29621.1| transcription termination/antitermination L factor [Haemophilus influenzae 10810] Length = 495 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 193/512 (37%), Positives = 322/512 (62%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + + F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDKKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ + + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANIEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|119944578|ref|YP_942258.1| NusA antitermination factor [Psychromonas ingrahamii 37] gi|119863182|gb|ABM02659.1| NusA antitermination factor [Psychromonas ingrahamii 37] Length = 499 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 193/514 (37%), Positives = 316/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ E+G FR Sbjct: 2 NKEILLVVEAVSNEKGLPREAIFQALESALAIATKKKYENDIEVRVEIDRESGKFDTFRR 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E ++EN +++ + A P I +G + D + + F R+ Q+AKQVI+QKV Sbjct: 62 WLVLEPDAKMENPCKEMTFEAAEYETPEIKVGDYIEDEIESVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++ ++ GE+I+G VKR+ N+++DLG N++ VI RDE + REN RPGDR Sbjct: 122 REAERAQVVAQYAEQEGELITGIVKRMNRDNILLDLGGNAEAVIFRDEMLPRENFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ ++ VR E RG Q+ ++RT P+ +++LF +EVPEI ++ + +RDPGSRAK+AV Sbjct: 182 LRGLLFAVRPEARGAQLFVTRTQPEMLIELFRLEVPEIAEEMIDLMGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV +EL E++DI++W + A + INA+ PA V VV+ Sbjct: 242 KSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIILWDENPAQYAINAMSPADVVSVVI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V ++ L+ AIGR GQNVRLASQLTGW ++++T + Q + Sbjct: 302 DEDAHSMDIAVEEDNLAQAIGRNGQNVRLASQLTGWELNVMTVVQLREKHQAEAASVISV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+ +DE A +LV EGF+ +EE+A V ++E+ +I+G DE E++ RA+++L Sbjct: 362 FTEALEIDEEFAAVLVEEGFSSLEEIAYVPLNELLAIDGLDEALIDELRVRAKDFLATKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + + +++L ++ G++ + L GI T+E+LA +VDDLL E Sbjct: 422 LVDEEGLEDTKPADDLLALEGLEGHLAYVLASKGIITLENLAEQAVDDLLEIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W ++ Sbjct: 476 -----------LNEAKAGELIMAAR-NICWFSED 497 >gi|71083093|ref|YP_265812.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1062] gi|71062206|gb|AAZ21209.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1062] Length = 517 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 242/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F Sbjct: 6 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 65 Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L VVE+ EN +I+L+ A + + IG + PLP DFGR+A Q+AKQVI Sbjct: 66 RKLIVVEKPENTNTEINLQDAIILNEANKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 125 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD Sbjct: 126 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+ Sbjct: 186 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 306 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 365 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ + Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 425 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G Sbjct: 426 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K + + +I+ AR Sbjct: 486 RIKIQGYLEDFALSKTEADELIMSAR 511 >gi|261345162|ref|ZP_05972806.1| L factor protein [Providencia rustigianii DSM 4541] gi|282566853|gb|EFB72388.1| L factor protein [Providencia rustigianii DSM 4541] Length = 502 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 207/515 (40%), Positives = 318/515 (61%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L A+ DP + +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTMPTREITLDAAQFEDPELQLGGYVEDQIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 SIETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR + W Sbjct: 479 --------------GLNNEKAGELIMAAR-NICWF 498 >gi|121998529|ref|YP_001003316.1| transcription elongation factor NusA [Halorhodospira halophila SL1] gi|121589934|gb|ABM62514.1| NusA antitermination factor [Halorhodospira halophila SL1] Length = 501 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 222/521 (42%), Positives = 334/521 (64%), Gaps = 25/521 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +A + EK +DR+V+ + ++ A R + D RV ++ ++GD + +R Sbjct: 2 SKEILLVVEATSNEKGVDREVIFEAIEAALASATRKRHLEDIDARVAVDRQSGDYATYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + VE QISL+ AR+RD + ++GG V +P+ +DFGR+A Q+AKQVI+QKV Sbjct: 62 WEVVPDEESVEEPQRQISLERARERDENAEVGGYVEEPIESVDFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++ ++GE+++G+VKR+E G+ I+DLG N++ ++ R++ I RE +RP DR Sbjct: 122 REAERAQIVDAYQHRIGELVNGSVKRMERGSAIIDLGENTEALVSREDLIPREAVRPNDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ DVR E RGPQ+ +SRT +F+V+LF +EVPE+ G++++ +RDPG RAK++V Sbjct: 182 IRGYLRDVRSEPRGPQLFVSRTANEFLVELFKIEVPEVGQGLIEILGAARDPGMRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVGMRGSRVQAV EL E+IDI+ W + A FVINAL PA V +V+ Sbjct: 242 RALDPRIDPVGACVGMRGSRVQAVSNELSGERIDIIPWDENPAQFVINALAPAEVESIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED G ++V V +EQLS AIGR GQNVRLAS+LTGW ++++T EE +++ E Q Sbjct: 302 DEDRGAMDVAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKSEREAGELVQL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++ ++VDE +A +LV EGF+ +EE+A V +E+ IE FDE+ ++ RAR+ L Sbjct: 362 FVEHLDVDEDVAGVLVQEGFSSIEEVAYVPTAELLEIEEFDEDIVEALRSRARDVLLAQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ E SEEL ++ G+D + AL E G+ T+EDLA SVDDL+ Sbjct: 422 IA--EEANENQPSEELLALEGMDEQTAKALAERGVATVEDLADQSVDDLMEVE------- 472 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 G +D+ +I+ AR W + + Sbjct: 473 ----------GMDEDRAGQLIMKAREP--WFAASEGGERAD 501 >gi|42144|emb|CAA25200.1| unnamed protein product [Escherichia coli] Length = 494 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 192/511 (37%), Positives = 304/511 (59%), Gaps = 20/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN ++ VI R+++ + + Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDSCRVKTFALATAFVA 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 R G Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 CSIPFAR-NGGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 241 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 300 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 301 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 360 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 361 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 420 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 421 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 471 -------GLTDEKAGALIMAAR-NICWFGDE 493 >gi|146308624|ref|YP_001189089.1| transcription elongation factor NusA [Pseudomonas mendocina ymp] gi|145576825|gb|ABP86357.1| NusA antitermination factor [Pseudomonas mendocina ymp] Length = 493 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 318/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR Sbjct: 2 SKEVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ I RE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F Sbjct: 302 EDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ SI+GFDEE E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +++L + G+D + + L G+ T EDLA S Sbjct: 422 ANEEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS---------------- 465 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 466 -IDDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|171058383|ref|YP_001790732.1| NusA antitermination factor [Leptothrix cholodnii SP-6] gi|170775828|gb|ACB33967.1| NusA antitermination factor [Leptothrix cholodnii SP-6] Length = 492 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 324/511 (63%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + DA++ EK++DR+VV + ++ A + LY DIRV ++ +TG FR Sbjct: 2 NRELLMLVDAISREKNVDREVVFGAVEAALASATKKLYEGEVDIRVAVDRDTGVYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I A+++ I++ + + + + GR+ Q+AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPEAEILHFEAKEQIDDIEVDDYLEESVESVPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F + +I GTVKR++ G+++V+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREQLLNDFMSRGEKIFVGTVKRLDKGDLVVESGRVEGRLRRSELIPKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RGPQ++LSR+ P+FM++LF +EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAIIVEVDPTLRGPQIVLSRSAPEFMIELFRLEVPEIEQGLLEIKSCARDSGSRAKIAVV 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDRRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATESDSIRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 VDKLDVDEDVADILIAEGFTSLEEVAYVPMQEMLEIESFDEDTVHELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ E VS++L + G+++++ L + GI T +DLA +VD+L + Sbjct: 422 VNEEKVDE--VSQDLRDLEGLNAELIGKLSDGGIHTRDDLADLAVDELTEMT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + +++I+ AR W Sbjct: 472 ---------GIDDNAAKALILKAREH--WFT 491 >gi|237798562|ref|ZP_04587023.1| transcription elongation factor NusA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021415|gb|EGI01472.1| transcription elongation factor NusA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 493 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKRPGAVAGELIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|291613948|ref|YP_003524105.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291584060|gb|ADE11718.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 491 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 203/508 (39%), Positives = 320/508 (62%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA+A EK++D+++V + ++ A + + +D+RV I+ ++G+ FR Sbjct: 4 EVLLLVDALAREKNVDKEIVFGALESALASATKKRFSDEEADVRVSIDRQSGEYESFRRW 63 Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V+++ E I L+ A+ RDP I + + +PL +DFGR+ Q+AKQVI QK+R+ Sbjct: 64 QVMDDETFETPELHIKLEEAQKRDPHIQLEEFIEEPLENIDFGRIGAQAAKQVIFQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ ++SGT+KR+E GN IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILADFMERNEHLVSGTIKRIERGNAIVEFGKIEALLPRDQMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V R RGPQ++LSR +F+ KLF +EVPEI G++++ + +RDPGSRAK+AV S Sbjct: 184 YLLRVDRTVRGPQIILSRITTEFLSKLFELEVPEIEEGLLEIVSAARDPGSRAKIAVRSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVGMRGSRVQAV EL E++DI++WS + AT+VINAL PA VT +V+DE+ Sbjct: 244 DQRLDPIGTCVGMRGSRVQAVTNELAGERVDIILWSEEPATYVINALAPAEVTSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+ AIGR GQNVRLAS +TGW I+++T E+ + +++F++ F+ Sbjct: 304 KHSMDVVVEEENLAQAIGRGGQNVRLASDMTGWEINLMTVEQSAEKNEQEFSKIRDLFVA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ +IE FDE T E++ RAR L I Sbjct: 364 KLDVDEEVADILVQEGFNTLEEVAYVPLEEMQAIESFDEATVNELRSRARNALLTAAIVN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ E+L I G+D + L G+ T E LA D+L+ + Sbjct: 424 EEQVEHN--IEDLLKIAGMDEETARTLAGKGVGTQEQLADLDGDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR W Sbjct: 472 -------GMDAERANQLIMTARAP--WF 490 >gi|300721537|ref|YP_003710812.1| transcription pausing L factor [Xenorhabdus nematophila ATCC 19061] gi|297628029|emb|CBJ88578.1| transcription pausing; L factor [Xenorhabdus nematophila ATCC 19061] Length = 502 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 320/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L A+ DP I++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTLPTREITLDAAKFEDPEIELGSYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 302 NCTMDVAVENSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I+E+ ++EG DEE+ ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEDFATVLVEEGFSTLEELAYVPINELLAVEGLDEESVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +E+L ++PG++ + L +GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLSDQQPAEDLLNLPGMERTLAFNLAAHGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNDEKAGELIMAAR-NICWFGDD 501 >gi|330807482|ref|YP_004351944.1| transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375590|gb|AEA66940.1| Putative transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 493 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 210/511 (41%), Positives = 318/511 (62%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR Sbjct: 2 SKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEE +++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G R+ Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 362 IDELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|319896984|ref|YP_004135179.1| transcription elongation protein nusa [Haemophilus influenzae F3031] gi|317432488|emb|CBY80845.1| Transcription elongation protein NusA [Haemophilus influenzae F3031] Length = 495 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 194/512 (37%), Positives = 322/512 (62%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|83644100|ref|YP_432535.1| transcription elongation factor NusA [Hahella chejuensis KCTC 2396] gi|83632143|gb|ABC28110.1| N utilization substance protein A [Hahella chejuensis KCTC 2396] Length = 497 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 200/515 (38%), Positives = 327/515 (63%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + +AV+ EK +D+DV+ + ++ A + Y +DIRV+I+ +TG+ FR Sbjct: 2 NKEILLVVEAVSNEKGVDKDVIFEAIELALATATKKRYEDEEADIRVDIDRKTGEYQAFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV+ V +++L+ + + G + + + FGR+ Q+AKQ+I+QKV Sbjct: 62 RWLVVDNDAVPALGTELTLEEVHESGLDLKPGDTHEEEVEAVAFGRIGAQAAKQIIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +++KVG++++G VK+V N+IVDLG N++ ++ +D+ ISRE R GDR Sbjct: 122 REAERTKIVDSYREKVGDLVNGVVKKVTRDNIIVDLGANAEALLPKDQLISRETYRVGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + D+R + RGPQ++LSR Q +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 182 VRALLLDIRMDNRGPQLILSRACSQMLIELFRIEVPEIAEEVIEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV +EL +E+IDIV+W + A VINA+ PA V +++ Sbjct: 242 KTNDGRIDPVGACVGMRGSRVQAVSSELGNERIDIVLWDDNPAQLVINAMAPAEVASIIM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V ++ L++AIGR GQNV+LAS++TGW I+++TEE+ ++++F Sbjct: 302 DEDSHTMQVAVSEDNLAMAIGRSGQNVKLASEMTGWEINVLTEEQAGQQQEEEFRRYVDC 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ + V+E +A +L +EGF +EE+A V + E+ +I+ FDE+ E++ RA+ L Sbjct: 362 FIDQLGVEEDLAEVLASEGFTSLEEVAYVPMEEMLAIDDFDEDLVTELRKRAKNVLINQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++++ + +E+L ++ G+D + L GI TMEDLA SVDDLL E Sbjct: 422 LASEEQLEKAEPAEDLLNMEGMDRHLAFVLASKGIVTMEDLAEQSVDDLLDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR W E+++ Sbjct: 476 -----------VDEERAAQLIMTARKP--WFEEQQ 497 >gi|332528893|ref|ZP_08404863.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624] gi|332041650|gb|EGI78006.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624] Length = 511 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 199/532 (37%), Positives = 326/532 (61%), Gaps = 28/532 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ELL + +A++ EK+++RDVV + ++ +A + LY DIRV ++ +TG Sbjct: 1 MSSIKNSELLMLVEAISREKNVERDVVFGAVEAALAQATKKLYEGDVDIRVAVDRDTGLY 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 FR VV + ++ +I L A+++ P I++ + + + + GR+ +AKQV Sbjct: 61 ETFRRWHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEEAVESVPIGRIGAMAAKQV 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 I+QK+R+AER+ +F + +I G+VKR++ G++IV+ G +G ++R+E I +EN R Sbjct: 121 ILQKIRDAEREMLLNDFMSRGEKIFVGSVKRMDKGDLIVESGRVEGRLKRNEMIPKENFR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRV++ I +V EQRGP +LLSR+ P+FM++LF EVPEI G++++K+ +RD GSRA Sbjct: 181 AGDRVRAMIMEVNTEQRGPAILLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ Sbjct: 241 KIAVLSHDKRVDPIGTCVGVRGARVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Sbjct: 301 SIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETTT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM+ ++VDE IA +L+ EGF +EE+A V + E+ IE FDE+T E++ RA++ L Sbjct: 361 LRKLFMEKLDVDEEIADILITEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDAL 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPG----IDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++I ++ + E VS++L + + + + L + G+ T++DLA ++D+L Sbjct: 421 LTLEIAREESVDE--VSQDLRDLQFQGKPLSADVIAKLADGGVHTLDDLADLAIDELTVI 478 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G ++ +++I+ AR W E + Sbjct: 479 T-----------------GHSEEDAKALILKAREH--WFTDEPATAASGTSS 511 >gi|319776227|ref|YP_004138715.1| Transcription elongation protein NusA [Haemophilus influenzae F3047] gi|317450818|emb|CBY87040.1| Transcription elongation protein NusA [Haemophilus influenzae F3047] Length = 495 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 194/512 (37%), Positives = 322/512 (62%), Gaps = 20/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REA Sbjct: 62 WLVVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ Sbjct: 122 ERAKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+ Sbjct: 182 VLYKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ Sbjct: 302 NHSMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFIN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDIT 423 A+ +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + Sbjct: 362 ALKLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 422 EEEALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 ---------LTAEQAADLIMAAR-NICWFGEE 495 >gi|145589410|ref|YP_001156007.1| transcription elongation factor NusA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047816|gb|ABP34443.1| NusA antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 493 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 329/510 (64%), Gaps = 25/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +ADA+A EK++D+ +V + ++ A + Y T DIRV I+ E+G+ FR Sbjct: 4 EVLMLADALAREKNVDQAIVFEALEMALASATKKRYATEDVDIRVSIDRESGEYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ +I A+++ I++G + + + + FGR+ Q+AKQVI+Q++R Sbjct: 64 LVVPDEAGLQEPDKEILQFEAKEQLSDIEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ ++ ++ ++++GTVKR + +I++ G + ++RRD+ I +ENLR GDRV+ Sbjct: 124 DAEREQILNDYLERGEKVMTGTVKRADKNGLIIESGRVEALLRRDQMIPKENLRSGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV + Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VD+ +A +L+ EGF +EE+A V +SE+ I+ FDE+T E++ RAR+ L +++ Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDEDTVNELRTRARDSLLTMELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 +++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ ++ Sbjct: 424 KEERIGE--VSQDLRSLDGMTTELIAKLADNQVHTRDDLAELAVDELVEATQ-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +++I+ AR W Sbjct: 474 ---------IDEETAKTLIMKAREH--WFT 492 >gi|54307814|ref|YP_128834.1| transcription elongation factor NusA [Photobacterium profundum SS9] gi|46912237|emb|CAG19032.1| putative transcription pausing L factor [Photobacterium profundum SS9] Length = 495 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 196/511 (38%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG ++ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQVATFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F D GE+I+G VK+V VI+DLGN ++ VI+RD+ + REN R GDR++ Sbjct: 122 EREQIVEQFMDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRSGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ +++ F + Sbjct: 302 SHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHKEEAQVSIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ A+E L + + Sbjct: 362 YLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRKCAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +L + G++ ++ L GI T+EDLA DDLL E Sbjct: 422 EESFEGVEPAADLLGLDGLERELAFRLAAKGICTLEDLADQGTDDLLDLEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W E Sbjct: 473 --------MGEAKAGELIMAAR-NICWFSDE 494 >gi|330963974|gb|EGH64234.1| transcription elongation factor NusA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 493 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 324/511 (63%), Gaps = 22/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELVGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L S+ G+D + + L G+ T EDLA S+DDLL Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQSIDDLLDIDGIDDDR-- 479 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +I+ AR W E Sbjct: 480 ---------------AGKLIMAARAH--WFE 493 >gi|290473446|ref|YP_003466313.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004] gi|289172746|emb|CBJ79517.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004] Length = 502 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 207/518 (39%), Positives = 319/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEV T +I+L+ A+ DP +++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVEEVTLPTREITLEAAKYEDPEMELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++ VK+V N+ +DLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++D A +LV EGF+ +EELA V I+E+ +IEG DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDVDFATVLVEEGFSTLEELAYVPINELLAIEGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLGDQQPAEDLLNLSGMDRTLAFNLAAHGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLSDEKAGELIMAAR-NICWFGDD 501 >gi|254252537|ref|ZP_04945855.1| Transcription elongation factor [Burkholderia dolosa AUO158] gi|124895146|gb|EAY69026.1| Transcription elongation factor [Burkholderia dolosa AUO158] Length = 491 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRTLFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|183600365|ref|ZP_02961858.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827] gi|188020156|gb|EDU58196.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827] Length = 502 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 207/515 (40%), Positives = 319/515 (61%), Gaps = 26/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+V T +I+L+ A+ +P + +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEDVTMPTREITLEAAQFENPELKLGEYVEDQIESVAFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEEFATALVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D+ + L GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDNTLAYNLAIRGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ ++I+ AR + W Sbjct: 479 --------------GLDGEKAGALIMAAR-NICWF 498 >gi|221214880|ref|ZP_03587848.1| transcription termination factor NusA [Burkholderia multivorans CGD1] gi|221165107|gb|EED97585.1| transcription termination factor NusA [Burkholderia multivorans CGD1] Length = 491 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|121609702|ref|YP_997509.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121554342|gb|ABM58491.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2] Length = 494 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 324/510 (63%), Gaps = 24/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LELL + DA++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G FR Sbjct: 2 SLELLMLIDAISREKNVERDVVLDAVESALAQATKKLYQGEVDIRVAVDRKSGGHETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDEAGLQNPDAEELLMDAKERIADIEVGEYIEETVDSVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSELIPKENLRSGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI ++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLSLRGAPIILSRSAPEFMIELFRQEVPEIEQSLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLA+ LTGW I+I+ E + + K+ + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLAADLTGWKINIMDAAESAQKQAKESDTARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V + E+ I+ FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFNSLEEVAYVPLQEMLEIDSFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + E VS++L + G+ + L + G+ T +DLA ++D+L + Sbjct: 422 AREESVEE--VSQDLRDLGGLSPALIAQLAKGGVHTRDDLADLAIDELTDLT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ +++I+ AR W Sbjct: 472 ---------GQSEEEAKALIMKAREH--WF 490 >gi|89900917|ref|YP_523388.1| NusA antitermination factor [Rhodoferax ferrireducens T118] gi|89345654|gb|ABD69857.1| NusA antitermination factor [Rhodoferax ferrireducens T118] Length = 498 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 195/518 (37%), Positives = 321/518 (61%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +A++ EK+++ DVV + ++ +A R +Y DIRV ++ ++G+ FR Sbjct: 2 NREMLMLVEAISREKNVELDVVFGAVEAALAQATRKIYPGDVDIRVALDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A+++ P I++ + + + + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEETVESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + I GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDNIFVGTVKRMDKGDLIVESGRVEGRLRRTEMIPKENLRVGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDVGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINILDAAESAQKQASETDSGRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA LL+AEGF +E++A V + E+ IE FDE+TA E++ RA++ L ++I Sbjct: 362 MEHLDVDEEIADLLIAEGFTSLEQVAYVPLEEMLEIESFDEDTANELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ ++ VS +L + G+ ++ L +G+ ++DLA +VD+L + Sbjct: 422 AHEESVQA--VSLDLRDLQGLTPELIAKLATSGVNNLDDLADLAVDELTEIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G D +++I+ AR W + + E Sbjct: 472 ---------GQSADDAKTLIMKAREH--WFTNDAASQE 498 >gi|186476488|ref|YP_001857958.1| transcription elongation factor NusA [Burkholderia phymatum STM815] gi|184192947|gb|ACC70912.1| NusA antitermination factor [Burkholderia phymatum STM815] Length = 491 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 215/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFDEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKADAQIDDFLEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGESIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ GV+ +L S+ G+D+++ L E+ I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--GVALDLKSLDGMDAELLAKLAEHQIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GVTEDAAKALIMKAREH--WF 490 >gi|161524929|ref|YP_001579941.1| transcription elongation factor NusA [Burkholderia multivorans ATCC 17616] gi|189350321|ref|YP_001945949.1| transcription elongation factor NusA [Burkholderia multivorans ATCC 17616] gi|221197756|ref|ZP_03570802.1| transcription termination factor NusA [Burkholderia multivorans CGD2M] gi|221204686|ref|ZP_03577703.1| transcription termination factor NusA [Burkholderia multivorans CGD2] gi|160342358|gb|ABX15444.1| NusA antitermination factor [Burkholderia multivorans ATCC 17616] gi|189334343|dbj|BAG43413.1| N utilization substance protein A [Burkholderia multivorans ATCC 17616] gi|221175543|gb|EEE07973.1| transcription termination factor NusA [Burkholderia multivorans CGD2] gi|221181688|gb|EEE14089.1| transcription termination factor NusA [Burkholderia multivorans CGD2M] Length = 491 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|78066110|ref|YP_368879.1| transcription elongation factor NusA [Burkholderia sp. 383] gi|77966855|gb|ABB08235.1| NusA antitermination factor [Burkholderia sp. 383] Length = 491 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 215/508 (42%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L ARD++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEARDQNPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDLT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|260221430|emb|CBA29985.1| Transcription elongation protein nusA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 498 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 199/518 (38%), Positives = 323/518 (62%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVEAALAQATKKLYAGDVDIRVALDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A+++ I++ + +P+ + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEQIADIEVDEYIEEPVASVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFVGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIVLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKLANETDSGRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVHELRNRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + E VS+ L + G+ ++ L + G+ T ++LA +VD+L + Sbjct: 422 AHEESVEE--VSQNLRDLEGLTPELIGKLADGGVHTRDELADLAVDELTDIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G D+ +++I+ AR W + + E Sbjct: 472 ---------GQSADEAKALIMKAREH--WFTNDGASQE 498 >gi|319793511|ref|YP_004155151.1| nusa antitermination factor [Variovorax paradoxus EPS] gi|315595974|gb|ADU37040.1| NusA antitermination factor [Variovorax paradoxus EPS] Length = 497 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 324/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR Sbjct: 2 NREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVAVDRDSGDYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A++ I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEI 421 Query: 423 TLQKKIR-ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++ + + VS+ L + G+D ++ L E G+ T +DLA +VD+L + Sbjct: 422 AKEEGVETQSSVSQNLRDLEGLDPELIPKLAEAGVNTRDDLADLAVDELTEIT------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G D +++I+ AR W ++ Sbjct: 475 ----------GHSADDAKALILKAREH--WFAGQE 497 >gi|312796186|ref|YP_004029108.1| N utilization substance protein A [Burkholderia rhizoxinica HKI 454] gi|312167961|emb|CBW74964.1| N utilization substance protein A [Burkholderia rhizoxinica HKI 454] Length = 491 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++++DVV + + ++ A + L+ DIRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVNKDVVFAALEAALASATKKLFDEDVDIRVSIDRESGEHETFRRWR 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V + ++ +I L AR++DP + G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 IVPDEAGLQQPDQEILLFEAREQDPDAQLDGYIEEPIPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +I++G+VKR++ GN++V+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEKIMTGSVKRLDKGNLVVESGRVEALLRRDQLIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF EVPEI G++++K+ +RDPG RAK+AV + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEFEVPEIEQGLLEIKSAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM+ Sbjct: 304 KHAMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAEKQSQERKVLRDLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + EL S+ G+D ++ L E+ I T +DLA +VD+L+ + Sbjct: 424 EEKVENASL--ELKSLEGMDRELLAKLAEHEIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GIDEEAAKALIMKAREH--WF 490 >gi|325526251|gb|EGD03870.1| transcription elongation factor NusA [Burkholderia sp. TJI49] Length = 491 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|253995583|ref|YP_003047647.1| transcription elongation factor NusA [Methylotenera mobilis JLW8] gi|253982262|gb|ACT47120.1| NusA antitermination factor [Methylotenera mobilis JLW8] Length = 488 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 206/507 (40%), Positives = 336/507 (66%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++D+ V+ + + ++ A + + +D+RV I+ E+G+ FR + Sbjct: 4 EILLLVDALAHEKNVDKSVIFTALELALASATKKKHHDDADVRVAIDRESGEYQTFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ +EN QI + +R + IG +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 YVDYDLLENSAYQIDEED--ERSKGLTIGDYYEEPLENLEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV++Y Sbjct: 122 EREQILQDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F+V+LF +EVPEI G++++++ +RDPG R+K+AV S+D Sbjct: 182 LLRIERSGRGPQLILSRIIPEFLVRLFELEVPEIEEGLLEIRSAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q+++ +Q FM+ Sbjct: 302 HSMDVVVEEEQLALAIGRSGQNVRLASELTGWTLNILTVDQAAQKNQEEYAGVSQLFMEK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDEEVAEILVQEGFSTLEEIAYVPLAEMNQIEAFDEDTVEELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E +E+L ++ G+D L GI TM+DLA ++D+L+ + Sbjct: 422 EKVEEA--AEDLLTLEGMDDATAHQLAAKGISTMDDLAELAIDELVELT----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 +++ +++I+ AR W Sbjct: 469 ------NMDEERAKTLIMTARAP--WF 487 >gi|30248764|ref|NP_840834.1| transcription elongation factor NusA [Nitrosomonas europaea ATCC 19718] gi|30180359|emb|CAD84671.1| S1 RNA binding domain:KH domain:Type 1 KH domain [Nitrosomonas europaea ATCC 19718] Length = 490 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 210/507 (41%), Positives = 323/507 (63%), Gaps = 23/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG FR Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHTRDDIDVRVSIDRDTGGFHCFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V + VE+ QI++ A R+P G + D + + F R+ Q+AKQVI QK+R+A Sbjct: 64 IVADDPVEHPERQITVSEAVGRNPQAVPGEYIEDLMEDVTFDRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++ G +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y Sbjct: 124 EREQNLNDFLDRGEYLVYGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P F+ KLF +EVPEI GI+++KA +RDPGSRAK+AV S+D Sbjct: 184 LLRIDRSVRGPQLVLSRTSPAFLAKLFELEVPEIEEGILEIKAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DP+G CVGMRGSRVQAV +EL E++DI+ WS D ATFV+NAL PA+++ +V+DE+ Sbjct: 244 SRVDPIGTCVGMRGSRVQAVTSELAGERVDIIQWSDDQATFVVNALAPAVISSIVVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V +E L+ AIGR GQNVRLAS+LTGW ++I+TEEE +++ + FM+ Sbjct: 304 HCMDIVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTEEESQEKTEEEAASICELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I + Sbjct: 364 LDVDEDVGRILVEEGFSTLEEVAYIPIEEMLEIQEFDRETIEELRNRARNALLTDAIATE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +KI SE L ++ G+D ++ L E GI T E+LA + DDL+ + Sbjct: 424 EKIGHA--SEALLALEGMDIELVRELAEKGISTQEELADLAADDLVELT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +II AR W Sbjct: 471 ------GIDFERASKIIIKAREP--WF 489 >gi|134295573|ref|YP_001119308.1| transcription elongation factor NusA [Burkholderia vietnamiensis G4] gi|134138730|gb|ABO54473.1| NusA antitermination factor [Burkholderia vietnamiensis G4] Length = 491 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERERLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLTKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GVEEDAAKALIMKAREH--WF 490 >gi|71281620|ref|YP_268927.1| transcription termination factor NusA [Colwellia psychrerythraea 34H] gi|71147360|gb|AAZ27833.1| transcription termination factor NusA [Colwellia psychrerythraea 34H] Length = 497 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 192/514 (37%), Positives = 311/514 (60%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + M +++ A + Y +RV I+ +G+ FR Sbjct: 2 SKEILLVVDAVSNEKALPRESIFEAMETALETATKKKYEGDIIVRVSIDRISGEFDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++E+ +EN +I L A+ P +++G D + + F RV Q+AKQVI+QK+ Sbjct: 62 WLIIEDGEPMENPYAEIGLAAAQYDAPELNVGDYSEDQIESVKFDRVTTQTAKQVIVQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER +++ +GEI++G VK+ +VIVDLGN ++ VI RD+ + RE RPGDR Sbjct: 122 REAERALVTEAYQEHLGEIVTGVVKKASRESVIVDLGNNAEAVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y+++ E RG Q+ LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 182 VRGLLYEIKPEARGAQLFLSRTKPEMLIELFRVEVPEIGEEMLEIKGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRGSRVQAV EL E++DIV++ + A +VINA+ PA V +++ Sbjct: 242 KSNDKRIDPVGACVGMRGSRVQAVSGELGGERVDIVLYDDNVAQYVINAMSPAEVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED G +++ V + L++AIGR GQN+RLASQLTGW ++++T + Q + ++ Sbjct: 302 DEDKGTMDIAVEEANLAMAIGRSGQNIRLASQLTGWELNVMTVADMKEKHQAENDKVLNL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++DE A LL EGF +EE+A V +E+ I+G DEE ++ RA+E L Sbjct: 362 FIDKLDLDEDFATLLAEEGFTSLEEIAYVPTAEMLDIDGLDEEIIEALRERAKEALTTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +++L + G++ + L G++T+EDLA +D++ E Sbjct: 422 LASEETLEGSEPAQDLLDLDGLERHLAFVLASRGVRTLEDLAEQGIDEISDIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W +E Sbjct: 476 -----------LDETKAGELIMAAR-NICWFNEE 497 >gi|292492785|ref|YP_003528224.1| transcription termination factor NusA [Nitrosococcus halophilus Nc4] gi|291581380|gb|ADE15837.1| transcription termination factor NusA [Nitrosococcus halophilus Nc4] Length = 506 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 225/522 (43%), Positives = 328/522 (62%), Gaps = 23/522 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK + ++V+ + ++ A R Y +RV I+ TGD FR Sbjct: 2 NKEILMVVDAVSNEKGVGKEVIFQAIEAALAMATRKRYQEDIAVRVAIDRATGDYQSFRT 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVVE E+E QI L A RDP+I++GG + +P+ + FGR+A Q+AKQVI+QKV Sbjct: 62 WEVVEDEAELEAPQRQICLGEALKRDPNIEVGGFIEEPMESIAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +KD+VGE++ G VKR + GNVI+DLG N++G+I ++E I RE +RPGDR Sbjct: 122 REAERAKVVAAYKDRVGEMVMGVVKRTDRGNVILDLGDNAEGIIPQEEMIPREAIRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +VR E RGPQ++LSRT P+ +++LF +EVPEI +++K +RDPG RAK+AV Sbjct: 182 LRGYLKEVRTEGRGPQLVLSRTAPELLIELFKLEVPEINENRIEIKGAARDPGLRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+ Sbjct: 242 KTNEARIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPAHFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TEEE + + Q Sbjct: 302 DEESHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEEEAGEKGEAEAKALQQM 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF+ +EE+A V EI ++E FD + E++ RAR+ L Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEVAYVPEQEILAVEEFDSQIVQELRNRARDVLLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ I + +EL + ID ++ L GI T +DLA SVDDL+ Sbjct: 422 IANEETIETMQPDQELLDMEEIDYELAGILASKGIVTKDDLAEQSVDDLMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G K++ +I+ AR W E+ + + Sbjct: 475 ----------GMDKEKAARLIMAARES--WFASEQEGEGTEE 504 >gi|209694189|ref|YP_002262117.1| transcription elongation factor NusA [Aliivibrio salmonicida LFI1238] gi|208008140|emb|CAQ78282.1| transcription elongation protein NusA [Aliivibrio salmonicida LFI1238] Length = 495 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 194/511 (37%), Positives = 313/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TG + FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +VE+ T +IS++ A+ D +I+IGG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVAQVEHPTLEISIEAAQFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F D GE+I+G VK+V +IVDLG N++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVIN++ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D A LLV EGF +EE+A V ++E+ +E DEET ++ RA+E L + + Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDEETVDLLRTRAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ G+ T+EDLA VD+L Sbjct: 422 EESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W E Sbjct: 472 -------DLTEERAGELIMAAR-NICWFSDE 494 >gi|167582087|ref|ZP_02374961.1| transcription elongation factor NusA [Burkholderia thailandensis TXDOH] Length = 491 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|107022573|ref|YP_620900.1| transcription elongation factor NusA [Burkholderia cenocepacia AU 1054] gi|116689521|ref|YP_835144.1| transcription elongation factor NusA [Burkholderia cenocepacia HI2424] gi|254245586|ref|ZP_04938907.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|105892762|gb|ABF75927.1| NusA antitermination factor [Burkholderia cenocepacia AU 1054] gi|116647610|gb|ABK08251.1| NusA antitermination factor [Burkholderia cenocepacia HI2424] gi|124870362|gb|EAY62078.1| Transcription elongation factor [Burkholderia cenocepacia PC184] Length = 491 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|149926272|ref|ZP_01914534.1| transcription elongation factor NusA [Limnobacter sp. MED105] gi|149825090|gb|EDM84302.1| transcription elongation factor NusA [Limnobacter sp. MED105] Length = 489 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 316/508 (62%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + DA+A EK++D+D+V + ++ A + + D+RV I+ +TGD FR E Sbjct: 4 ELLLLVDALAREKNVDKDIVFGALELALASATKKRFDEEVDVRVSIDRDTGDYDTFRRWE 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ + Q+ L A D ++G + + L P++FGR+ Q+AKQVI+Q+VR+A Sbjct: 64 VVTEEDFYDPAYQMVLDQALKHDEEAEMGDFIEEELEPVEFGRIGAQAAKQVILQRVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ +I+ G VKR+E G+ IV+ G + + RD+ I RE+LRPGDRV++Y Sbjct: 124 EREQILQDFLDRGDKIVIGQVKRMERGDAIVESGRIEARLPRDQMIPRESLRPGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ V R RG QV+LSRT P+F+ LF MEVPEI G +++K +RDPG RAK+AV + D Sbjct: 184 LWKVDRMARGQQVILSRTSPEFIKALFAMEVPEIEQGHLEIKGAARDPGMRAKIAVLAHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 RRIDPIGTCVGVRGSRVQAVTQELGGERVDIVLWSEDPAQFVIGALSPATVQSIVVDEDQ 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+V + +L+ AIGR GQNVRLAS LTGW I+I+T EE + +++ + + F Sbjct: 304 HVMEVVVDEAELAQAIGRSGQNVRLASDLTGWQINIMTPEESAKRSEEEIGKLRELFTSK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A++L+ EGF+ ++++A V I+E+ IE FD +T E++ RAR L I + Sbjct: 364 LDVDEKVANILIEEGFSGLQKVAYVPIAEMQEIEAFDADTVEELRTRARNALLTEAIARE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + + G +L SI G+D+ + L I E LA +VD+L+ + Sbjct: 424 EMVEGAG---DLMSIEGVDADLVGKLAAAEISDREGLAELAVDELVEIA----------- 469 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +D+ +I+ AR W E Sbjct: 470 ------GIEEDRARDIIMKARAH--WFE 489 >gi|170732825|ref|YP_001764772.1| transcription elongation factor NusA [Burkholderia cenocepacia MC0-3] gi|169816067|gb|ACA90650.1| NusA antitermination factor [Burkholderia cenocepacia MC0-3] Length = 491 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|171317091|ref|ZP_02906294.1| NusA antitermination factor [Burkholderia ambifaria MEX-5] gi|171097725|gb|EDT42552.1| NusA antitermination factor [Burkholderia ambifaria MEX-5] Length = 491 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L + GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKGLDGITPELLAKLAEHGMQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|115351434|ref|YP_773273.1| transcription elongation factor NusA [Burkholderia ambifaria AMMD] gi|170700023|ref|ZP_02891048.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10] gi|172060473|ref|YP_001808125.1| transcription elongation factor NusA [Burkholderia ambifaria MC40-6] gi|115281422|gb|ABI86939.1| NusA antitermination factor [Burkholderia ambifaria AMMD] gi|170135082|gb|EDT03385.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10] gi|171992990|gb|ACB63909.1| NusA antitermination factor [Burkholderia ambifaria MC40-6] Length = 491 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L + G+ ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|148361087|ref|YP_001252294.1| N utilization substance protein A [Legionella pneumophila str. Corby] gi|148282860|gb|ABQ56948.1| N utilization substance protein A [Legionella pneumophila str. Corby] Length = 492 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 210/510 (41%), Positives = 328/510 (64%), Gaps = 23/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+P+TGD FR Sbjct: 2 SKELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDPKTGDYETFRY 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVR Sbjct: 62 WDVVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV Sbjct: 122 EAERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV Sbjct: 182 RAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+D Sbjct: 242 TNDGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 302 EDTHTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + + Sbjct: 362 TSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 422 SSGKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE-------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 ---------GISEEKAGALIMKAREP--WF 491 >gi|237746613|ref|ZP_04577093.1| transcription pausing [Oxalobacter formigenes HOxBLS] gi|229377964|gb|EEO28055.1| transcription pausing [Oxalobacter formigenes HOxBLS] Length = 518 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 204/468 (43%), Positives = 313/468 (66%), Gaps = 5/468 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LE+LQ+ DA+A EK++D+++VL + ++ A + Y DIRV I+ ++G++ FR Sbjct: 2 SLEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDVDIRVAIDRQSGEVETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ ++ A+++ P I++G + D + +D GR Q KQ+++Q++ Sbjct: 62 WHVVPDEAGLQQPDQEMLFFEAKEQFPDIEVGDYIEDHVESVDLGRRFAQDTKQIVLQRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV Sbjct: 122 RDAEREQILQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRIGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AV+ Sbjct: 182 RAYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 TADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + F Sbjct: 302 EDKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKTALEKAELQKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VD +A +L+ EGF +EE+A V I+E+ IE FDEET EI+ RAR+ L I Sbjct: 362 MEKLDVDSEVADILIEEGFTSLEEIAYVPINEMLDIEAFDEETVNEIRQRARDALITEAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ E L + G+ + LG G+KT+E AG + D+ Sbjct: 422 VSEEGM--AGMEEALSGLEGMSRSVAGKLGLAGVKTLERFAGLAYDEF 467 >gi|15836839|ref|NP_297527.1| transcription elongation factor NusA [Xylella fastidiosa 9a5c] gi|9105045|gb|AAF83047.1|AE003877_2 N utilization substance protein A [Xylella fastidiosa 9a5c] Length = 503 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 199/508 (39%), Positives = 321/508 (63%), Gaps = 22/508 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ ++G+ + Sbjct: 2 SKELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKSGNYETY 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 +VREAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPG Sbjct: 121 RVREAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVIAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Sbjct: 301 IVDEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 RLFMERLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ + Sbjct: 421 AALAEEEGLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ--- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARY 507 G + +I+ AR Sbjct: 478 ------------GMTVQRAAVLILAARA 493 >gi|254284119|ref|ZP_04959087.1| N utilization substance protein A [gamma proteobacterium NOR51-B] gi|219680322|gb|EED36671.1| N utilization substance protein A [gamma proteobacterium NOR51-B] Length = 499 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 327/516 (63%), Gaps = 22/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + D++ + ++ AA+ Y SDI V+I+ ETGD R Sbjct: 2 NKEILMVAEAVSNEKGVSEDIIFEAIELALATAAKKRYDEESDIEVQIDRETGDYVTTRR 61 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + E Q + + A + + + G V + + +DFGR+A Q+AKQVI+Q+VR Sbjct: 62 WLVVPDSELALLGTQFTTEEAIEVNAELKPGDVHEEVVDNVDFGRIAAQTAKQVIVQRVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +AER + +++ +VGE+++GTVK+V NVIVDLG N++G++ R E + RE R DRV Sbjct: 122 DAERAQIVEQYQSRVGELLAGTVKKVTRDNVIVDLGGNAEGLLPRTELVGRETFRINDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++ E RGPQ++LSR + +++LF +EVPEI G++Q++A +RDPGSRAK+AV Sbjct: 182 RAILTEINTESRGPQLILSRACKEMLIELFKIEVPEIAEGVIQIRAAARDPGSRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D IDPVGACVGMRGSRVQAV EL +E++DI++W ++A VINA+ PA V +V+D Sbjct: 242 TGDQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNAAQLVINAMSPAEVESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +EV V ++ L+ AIGR GQNVRLAS LT WTI++++ ++ ++ + + + F Sbjct: 302 EDSNTMEVAVAEDNLAQAIGRGGQNVRLASDLTEWTINVMSVDDAIEKQEAEAIQVMETF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M A++VDE +A +LV EGF +EE+A V + E+ SIEGFDE+ + E++ RA++ L + I Sbjct: 362 MNALDVDEDVAGVLVEEGFTTLEEVAYVPLEEMMSIEGFDEDISEELRARAKDALLTMAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ +E+L ++ G++ + L GI TMEDLA VDD++ Sbjct: 422 ASEEQLGANEPAEDLLAMEGMERHLAFVLASRGIVTMEDLAEQGVDDIMDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +++ ++I+ AR W +E+ A Sbjct: 474 ---------DMTEERAAALIMTAREP--WFAEEESA 498 >gi|167562940|ref|ZP_02355856.1| transcription elongation factor NusA [Burkholderia oklahomensis EO147] Length = 491 Score = 563 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+ Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMDEESAKALIMKAREH--WF 490 >gi|167836822|ref|ZP_02463705.1| transcription elongation factor NusA [Burkholderia thailandensis MSMB43] Length = 491 Score = 563 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPEVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILVDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ +++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTAELLTKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|152980158|ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille] gi|151280235|gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille] Length = 519 Score = 563 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 203/466 (43%), Positives = 311/466 (66%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ ETG+ FR Sbjct: 4 EILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I A+++ I++ + +P+ +DFGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++ Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ E L ++ G+D + LG GIKT+ + + D+ Sbjct: 424 EEGLE--GMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEF 467 >gi|167587339|ref|ZP_02379727.1| NusA antitermination factor [Burkholderia ubonensis Bu] Length = 491 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ +++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKGDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLSKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GVEEDAAKALIMKAREH--WF 490 >gi|53719533|ref|YP_108519.1| transcription elongation factor NusA [Burkholderia pseudomallei K96243] gi|53724824|ref|YP_102761.1| transcription elongation factor NusA [Burkholderia mallei ATCC 23344] gi|76808602|ref|YP_333313.1| transcription elongation factor NusA [Burkholderia pseudomallei 1710b] gi|121598320|ref|YP_992838.1| transcription elongation factor NusA [Burkholderia mallei SAVP1] gi|124384704|ref|YP_001026181.1| transcription elongation factor NusA [Burkholderia mallei NCTC 10229] gi|126439048|ref|YP_001058778.1| transcription elongation factor NusA [Burkholderia pseudomallei 668] gi|126449841|ref|YP_001080549.1| transcription elongation factor NusA [Burkholderia mallei NCTC 10247] gi|126455004|ref|YP_001066030.1| transcription elongation factor NusA [Burkholderia pseudomallei 1106a] gi|134282331|ref|ZP_01769036.1| transcription termination factor NusA [Burkholderia pseudomallei 305] gi|167004351|ref|ZP_02270109.1| transcription termination factor NusA [Burkholderia mallei PRL-20] gi|167719819|ref|ZP_02403055.1| transcription elongation factor NusA [Burkholderia pseudomallei DM98] gi|167738820|ref|ZP_02411594.1| transcription elongation factor NusA [Burkholderia pseudomallei 14] gi|167816041|ref|ZP_02447721.1| transcription elongation factor NusA [Burkholderia pseudomallei 91] gi|167824417|ref|ZP_02455888.1| transcription elongation factor NusA [Burkholderia pseudomallei 9] gi|167845949|ref|ZP_02471457.1| transcription elongation factor NusA [Burkholderia pseudomallei B7210] gi|167894526|ref|ZP_02481928.1| transcription elongation factor NusA [Burkholderia pseudomallei 7894] gi|167902931|ref|ZP_02490136.1| transcription elongation factor NusA [Burkholderia pseudomallei NCTC 13177] gi|167911167|ref|ZP_02498258.1| transcription elongation factor NusA [Burkholderia pseudomallei 112] gi|167919191|ref|ZP_02506282.1| transcription elongation factor NusA [Burkholderia pseudomallei BCC215] gi|217423351|ref|ZP_03454852.1| transcription termination factor NusA [Burkholderia pseudomallei 576] gi|226199712|ref|ZP_03795265.1| transcription termination factor NusA [Burkholderia pseudomallei Pakistan 9] gi|237812041|ref|YP_002896492.1| transcription elongation factor NusA [Burkholderia pseudomallei MSHR346] gi|238562584|ref|ZP_00440122.2| transcription termination factor NusA [Burkholderia mallei GB8 horse 4] gi|242314941|ref|ZP_04813957.1| transcription termination factor NusA [Burkholderia pseudomallei 1106b] gi|254178511|ref|ZP_04885166.1| transcription termination factor NusA [Burkholderia mallei ATCC 10399] gi|254179981|ref|ZP_04886580.1| transcription termination factor NusA [Burkholderia pseudomallei 1655] gi|254188607|ref|ZP_04895118.1| transcription termination factor NusA [Burkholderia pseudomallei Pasteur 52237] gi|254198017|ref|ZP_04904439.1| transcription termination factor NusA [Burkholderia pseudomallei S13] gi|254206031|ref|ZP_04912383.1| transcription termination factor NusA [Burkholderia mallei JHU] gi|254260843|ref|ZP_04951897.1| transcription termination factor NusA [Burkholderia pseudomallei 1710a] gi|254358405|ref|ZP_04974678.1| transcription termination factor NusA [Burkholderia mallei 2002721280] gi|52209947|emb|CAH35919.1| N utilization substance protein A [Burkholderia pseudomallei K96243] gi|52428247|gb|AAU48840.1| N utilization substance protein A [Burkholderia mallei ATCC 23344] gi|76578055|gb|ABA47530.1| N utilization substance protein A [Burkholderia pseudomallei 1710b] gi|121227130|gb|ABM49648.1| transcription termination factor NusA [Burkholderia mallei SAVP1] gi|124292724|gb|ABN01993.1| N utilization substance protein A [Burkholderia mallei NCTC 10229] gi|126218541|gb|ABN82047.1| transcription termination factor NusA [Burkholderia pseudomallei 668] gi|126228646|gb|ABN92186.1| transcription termination factor NusA [Burkholderia pseudomallei 1106a] gi|126242711|gb|ABO05804.1| transcription termination factor NusA [Burkholderia mallei NCTC 10247] gi|134246369|gb|EBA46458.1| transcription termination factor NusA [Burkholderia pseudomallei 305] gi|147753474|gb|EDK60539.1| transcription termination factor NusA [Burkholderia mallei JHU] gi|148027532|gb|EDK85553.1| transcription termination factor NusA [Burkholderia mallei 2002721280] gi|157936286|gb|EDO91956.1| transcription termination factor NusA [Burkholderia pseudomallei Pasteur 52237] gi|160699550|gb|EDP89520.1| transcription termination factor NusA [Burkholderia mallei ATCC 10399] gi|169654758|gb|EDS87451.1| transcription termination factor NusA [Burkholderia pseudomallei S13] gi|184210521|gb|EDU07564.1| transcription termination factor NusA [Burkholderia pseudomallei 1655] gi|217393209|gb|EEC33230.1| transcription termination factor NusA [Burkholderia pseudomallei 576] gi|225928298|gb|EEH24332.1| transcription termination factor NusA [Burkholderia pseudomallei Pakistan 9] gi|237503145|gb|ACQ95463.1| transcription elongation factor NusA [Burkholderia pseudomallei MSHR346] gi|238522259|gb|EEP85704.1| transcription termination factor NusA [Burkholderia mallei GB8 horse 4] gi|242138180|gb|EES24582.1| transcription termination factor NusA [Burkholderia pseudomallei 1106b] gi|243060319|gb|EES42505.1| transcription termination factor NusA [Burkholderia mallei PRL-20] gi|254219532|gb|EET08916.1| transcription termination factor NusA [Burkholderia pseudomallei 1710a] Length = 491 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|83719213|ref|YP_443082.1| transcription elongation factor NusA [Burkholderia thailandensis E264] gi|167620248|ref|ZP_02388879.1| transcription elongation factor NusA [Burkholderia thailandensis Bt4] gi|257139311|ref|ZP_05587573.1| transcription elongation factor NusA [Burkholderia thailandensis E264] gi|83653038|gb|ABC37101.1| N utilization substance protein A [Burkholderia thailandensis E264] Length = 491 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E ++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQSVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|54298757|ref|YP_125126.1| transcription elongation factor NusA [Legionella pneumophila str. Paris] gi|53752542|emb|CAH13974.1| Transcription elongation protein nusA [Legionella pneumophila str. Paris] Length = 492 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 210/510 (41%), Positives = 327/510 (64%), Gaps = 23/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR Sbjct: 2 SKELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRY 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVR Sbjct: 62 WDVVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ +F+ K+G++I GTVK+V NVI+DLG ++ + R E + E RP DRV Sbjct: 122 EAERELIIDQFRSKLGQLIYGTVKKVTRDNVIIDLGGKAEAFLPRSEMLPHEMFRPNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV Sbjct: 182 RAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+D Sbjct: 242 TNDGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 302 EDTHTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + + Sbjct: 362 TNALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 422 SSGKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE-------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 ---------GISEEKAGALIMKAREP--WF 491 >gi|160898430|ref|YP_001564012.1| NusA antitermination factor [Delftia acidovorans SPH-1] gi|160364014|gb|ABX35627.1| NusA antitermination factor [Delftia acidovorans SPH-1] Length = 495 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 322/514 (62%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RD+V + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDLVFGAVESALAQATKKLYQGEVDIRVAIDRDSGNYDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A+DR P I G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEEMLMDAQDRVPGISEGEYIEEEIESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ EF + I +GTVKR++ G++IV+ G +G +RR+E I +ENLR GDRV Sbjct: 122 RDAEREMLLNEFLSRGDRIFTGTVKRMDKGDIIVEAGRVEGRLRRNEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDATLRGAPIILSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDSGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Q F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVARQLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIEAFDEETVNELRTRAKDALLTQEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L ++ G+ +I L E + T +DLA ++D+L + Sbjct: 422 AHEENVG--KVSQDLLTLEGMTPEIVDKLAEADVHTRDDLADLAIDELTELT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +++I+ AR W + + Sbjct: 472 ---------GQTEEEAKALIMKAREH--WFTEGQ 494 >gi|134095611|ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans] gi|133739514|emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Herminiimonas arsenicoxydans] Length = 519 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 202/466 (43%), Positives = 312/466 (66%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+LQ+ DA+A EK++D D+V + ++ +A + Y DIRV I+ +TG+ FR Sbjct: 4 EILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I A+++ I++ + +P+ ++FGR Q KQV++Q++R+ Sbjct: 64 VVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++ Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRILFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V I E+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ E L ++ G+D + LG G+KT++ AG + D+ Sbjct: 424 EEGME--GMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEF 467 >gi|323525724|ref|YP_004227877.1| NusA antitermination factor [Burkholderia sp. CCGE1001] gi|323382726|gb|ADX54817.1| NusA antitermination factor [Burkholderia sp. CCGE1001] Length = 491 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|171463768|ref|YP_001797881.1| NusA antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193306|gb|ACB44267.1| NusA antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 493 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 326/510 (63%), Gaps = 25/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +ADA+A EK++ + +V + ++ A + Y T DIRV I+ ETG+ FR Sbjct: 4 EVLMLADALAREKNVGQAIVFEALEMALASATKKCYATEDVDIRVSIDRETGEYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV ++ +I A+++ +++G + + + + FGR+ Q+AKQVI+Q++R Sbjct: 64 LVVPNEAGLQEPDKEILQFEAQEQLADMEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ + ++ ++++GTVKR + VI++ G + ++RRD+ I +ENLR GDRV+ Sbjct: 124 DAEREQILNDHLERGEKVMTGTVKRADKNGVIIESGRVEALLRRDQMIPKENLRSGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV + Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VD+ +A +L+ EGF +EE+A V +SE+ I+ FD++T E++ RAR+ L +++ Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDKDTVNELRTRARDSLLTMELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 +++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ ++ Sbjct: 424 KEERIGE--VSQDLRSLEGMTTELIAKLADNQVHTRDDLAELAVDELVEATQ-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +++I+ AR W Sbjct: 474 ---------IDEETAKTLIMKAREH--WFT 492 >gi|206559872|ref|YP_002230636.1| transcription elongation factor NusA [Burkholderia cenocepacia J2315] gi|198035913|emb|CAR51805.1| N utilization substance protein A [Burkholderia cenocepacia J2315] Length = 491 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+ ++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHAVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|167570129|ref|ZP_02363003.1| transcription elongation factor NusA [Burkholderia oklahomensis C6786] Length = 491 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P ++IG + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEIGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ + +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLVPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+ Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMDEESAKALIMKAREH--WF 490 >gi|254297816|ref|ZP_04965269.1| transcription termination factor NusA [Burkholderia pseudomallei 406e] gi|157807196|gb|EDO84366.1| transcription termination factor NusA [Burkholderia pseudomallei 406e] Length = 487 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 209/507 (41%), Positives = 334/507 (65%), Gaps = 24/507 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR V Sbjct: 1 MLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLV 60 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+A Sbjct: 61 VPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++Y Sbjct: 121 EREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRAY 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + D Sbjct: 181 IAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAYD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 241 KRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 301 HSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMAR 360 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I + Sbjct: 361 LDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIANE 420 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ + Sbjct: 421 EKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT----------- 467 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 468 ------GMEEEAAKALIMKAREH--WF 486 >gi|254496140|ref|ZP_05109038.1| transcription elongation factor NusA [Legionella drancourtii LLAP12] gi|254354627|gb|EET13264.1| transcription elongation factor NusA [Legionella drancourtii LLAP12] Length = 502 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 205/520 (39%), Positives = 332/520 (63%), Gaps = 33/520 (6%) Query: 6 RLELLQIADAVAY---------EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPE 56 ELL +A+A++ E+ + ++V++ + +++ A R ++G +R++++P Sbjct: 2 SKELLLVAEALSKISKPLSVPTERGVSKEVIILAIQAALESATRKIFGLEIGVRIKLDPR 61 Query: 57 TGDISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 TG+ FR +VV ++VE Q++L A++R+P+I +G + + +P ++FGR+ Q+ Sbjct: 62 TGEYETFRFWDVVADEDDVEFPEHQLTLAQAKERNPAITVGERIEESIPSIEFGRIEAQA 121 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS 172 A+QVI+QKVREAERD +F+ K+G++I G+VK+V N+I+DLG ++ + R E + Sbjct: 122 ARQVIMQKVREAERDLVIEQFRSKLGQLIYGSVKKVTRDNIIIDLGGKAEAFLPRTEMLP 181 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E RP DRV++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI ++ VKA +R+ Sbjct: 182 HEMFRPNDRVRAYLYEIIPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIDVKAAARE 241 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 PG+RAK+AV ++D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ Sbjct: 242 PGNRAKIAVKTNDGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMA 301 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA +T +V+DED +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E Q Sbjct: 302 PADITSIVVDEDTHTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNQ 361 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++ ++ + F A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ R Sbjct: 362 EESSKIVKLFTSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDDEIVEELRNR 421 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 A + L + +T K + E L ++ G+ ++ L E GI +MEDLA SVD+LL Sbjct: 422 ANDNLLTMALTSGKGLAGA-PDESLLAMDGMTEELANKLAEKGITSMEDLAEQSVDELLE 480 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 481 ID-----------------GMSEEKAGALIMKAREP--WF 501 >gi|28198121|ref|NP_778435.1| transcription elongation factor NusA [Xylella fastidiosa Temecula1] gi|71898654|ref|ZP_00680824.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|182680749|ref|YP_001828909.1| transcription elongation factor NusA [Xylella fastidiosa M23] gi|28056181|gb|AAO28084.1| N utilization substance protein A [Xylella fastidiosa Temecula1] gi|71731601|gb|EAO33662.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|182630859|gb|ACB91635.1| NusA antitermination factor [Xylella fastidiosa M23] gi|307579213|gb|ADN63182.1| transcription elongation factor NusA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 503 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 199/508 (39%), Positives = 319/508 (62%), Gaps = 22/508 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ + Sbjct: 2 SKELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKNGNYETY 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 +VREAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPG Sbjct: 121 RVREAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVIAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Sbjct: 301 IVDEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQLAAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 RLFMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ + Sbjct: 421 AALAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ--- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARY 507 G + +I+ AR Sbjct: 478 ------------GMTVQRAAVLILAARA 493 >gi|71276363|ref|ZP_00652640.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Dixon] gi|71901435|ref|ZP_00683525.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|170729432|ref|YP_001774865.1| transcription elongation factor NusA [Xylella fastidiosa M12] gi|71162825|gb|EAO12550.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Dixon] gi|71728806|gb|EAO30947.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|167964225|gb|ACA11235.1| N utilization substance protein A [Xylella fastidiosa M12] Length = 503 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 199/508 (39%), Positives = 319/508 (62%), Gaps = 22/508 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ + Sbjct: 2 SKELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKNGNYETY 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 +VREAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPG Sbjct: 121 RVREAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVIAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Sbjct: 301 IVDEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 RLFMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ + Sbjct: 421 AALAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ--- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARY 507 G + +I+ AR Sbjct: 478 ------------GMTVQRAAVLILAARA 493 >gi|240949224|ref|ZP_04753568.1| transcription elongation factor NusA [Actinobacillus minor NM305] gi|240296340|gb|EER46984.1| transcription elongation factor NusA [Actinobacillus minor NM305] Length = 498 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 191/515 (37%), Positives = 308/515 (59%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG+ FR Sbjct: 2 SKEILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSDLDIDVRVSVDRKTGNFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N T +ISL+ A+ DP+I +G +V D + ++FGRVA+Q+ QV+ K+REA Sbjct: 62 WLVVEEVHNMTREISLEAAQFEDPNIQLGDIVEDEVESIEFGRVAIQTFGQVVKTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPG 179 E+ + EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPG Sbjct: 122 EKGKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIVREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+ Sbjct: 182 DRVRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ + Sbjct: 242 AVKSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +++++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE Q++ + Sbjct: 302 IINDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELEKKNQEEDGKVI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLE 418 A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ + Sbjct: 362 NLLTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAIT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L E Sbjct: 422 KQALAEEEALKQAHIDEKLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDELADIEE--- 478 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + +I+ AR ++ W Sbjct: 479 --------------LSAEAAGELIMAAR-QICWFS 498 >gi|52842972|ref|YP_096771.1| transcription elongation factor NusA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630083|gb|AAU28824.1| N utilization substance protein A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 492 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 209/510 (40%), Positives = 327/510 (64%), Gaps = 23/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR Sbjct: 2 SKELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRY 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVR Sbjct: 62 WDVVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV Sbjct: 122 EAERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV Sbjct: 182 RAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+D Sbjct: 242 TNDGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 302 EDTHTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + + Sbjct: 362 TSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 422 SSGKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE-------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 ---------GISEEKAGALIMKAREP--WF 491 >gi|223042074|ref|ZP_03612250.1| transcription elongation protein NusA [Actinobacillus minor 202] gi|223017149|gb|EEF15585.1| transcription elongation protein NusA [Actinobacillus minor 202] Length = 498 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 190/515 (36%), Positives = 306/515 (59%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG FR Sbjct: 2 SKEILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSELDIDVRVVVDRKTGSFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V N T +ISL+ A+ +P I +G VV D + ++FGRVA+Q+ QV+ K+REA Sbjct: 62 WLVVEDVHNMTREISLEAAQFENPDIQLGDVVEDEVESIEFGRVAIQTFGQVVKTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPG 179 E+ + EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPG Sbjct: 122 EKGKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIAREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+ Sbjct: 182 DRVRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ + Sbjct: 242 AVKSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE + Q++ + Sbjct: 302 TINDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELAKKNQEEDGKVI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLE 418 A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ + Sbjct: 362 NLLTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAIT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L E Sbjct: 422 KQALAEEEALKQAHIDEQLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDELADIEE--- 478 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + +I+ AR ++ W Sbjct: 479 --------------LSAEAAGELIMAAR-QICWFS 498 >gi|167856225|ref|ZP_02478960.1| translation initiation factor IF-2 [Haemophilus parasuis 29755] gi|167852645|gb|EDS23924.1| translation initiation factor IF-2 [Haemophilus parasuis 29755] Length = 510 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 198/527 (37%), Positives = 319/527 (60%), Gaps = 37/527 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEIN 54 E+L A+AV+ EK + +D + + ++ + + G D+RV I+ Sbjct: 2 SKEILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVID 61 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 +TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A Sbjct: 62 RKTGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTA 121 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRR 167 +QVI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R Sbjct: 122 RQVITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVR 181 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 ++ + REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K Sbjct: 182 EDMLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIK 241 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+ Sbjct: 242 GASRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFL 301 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 INA+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E Sbjct: 302 INAMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDEL 361 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETA 406 Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G DE+ Sbjct: 362 EKKHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLV 421 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E+Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA S Sbjct: 422 EELQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQS 481 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 VDDL E ++ +I+ AR ++ W Sbjct: 482 VDDLADIEE-----------------LTAEKAAELIMAAR-QICWFS 510 >gi|219870469|ref|YP_002474844.1| transcription elongation factor NusA [Haemophilus parasuis SH0165] gi|219690673|gb|ACL31896.1| transcription elongation factor NusA [Haemophilus parasuis SH0165] Length = 510 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 197/527 (37%), Positives = 318/527 (60%), Gaps = 37/527 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEIN 54 E+L A+AV+ EK + +D + + ++ + + G D+RV I+ Sbjct: 2 SKEILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVID 61 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 +TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A Sbjct: 62 RKTGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTA 121 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRR 167 +QVI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R Sbjct: 122 RQVITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVR 181 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 ++ + REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K Sbjct: 182 EDMLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIK 241 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+ Sbjct: 242 GASRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFL 301 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 INA+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E Sbjct: 302 INAMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDEL 361 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETA 406 Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G DE+ Sbjct: 362 EKKHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLV 421 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E+Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA Sbjct: 422 EELQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQG 481 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 VDDL E ++ +I+ AR ++ W Sbjct: 482 VDDLADIEE-----------------LTAEKAAELIMAAR-QICWFS 510 >gi|221067737|ref|ZP_03543842.1| NusA antitermination factor [Comamonas testosteroni KF-1] gi|220712760|gb|EED68128.1| NusA antitermination factor [Comamonas testosteroni KF-1] Length = 495 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 204/514 (39%), Positives = 321/514 (62%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK+ Sbjct: 62 WVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV Sbjct: 122 RDAEREMLLNEFLARGDKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L + Sbjct: 422 AREENVSKA--SEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDELTDIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W + Sbjct: 472 ---------GQTAEEAKALIMKAREH--WFADGQ 494 >gi|238027585|ref|YP_002911816.1| transcription elongation factor NusA [Burkholderia glumae BGR1] gi|237876779|gb|ACR29112.1| Transcription elongation factor NusA [Burkholderia glumae BGR1] Length = 491 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV+I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVQIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +D+G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQQPGVDVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR DRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVSDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDRLRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ S++ L ENG++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLEGMTSELLAKLAENGVQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GVEEEAAKALIMKAREH--WF 490 >gi|264677930|ref|YP_003277837.1| NusA antitermination factor [Comamonas testosteroni CNB-2] gi|299530199|ref|ZP_07043625.1| NusA antitermination factor [Comamonas testosteroni S44] gi|262208443|gb|ACY32541.1| NusA antitermination factor [Comamonas testosteroni CNB-2] gi|298721856|gb|EFI62787.1| NusA antitermination factor [Comamonas testosteroni S44] Length = 495 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 204/514 (39%), Positives = 321/514 (62%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK+ Sbjct: 62 WVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV Sbjct: 122 RDAEREMLLNEFLARGEKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L + Sbjct: 422 AREENVSKA--SEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDELTEIT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W + Sbjct: 472 ---------GQTAEEAKALIMKAREH--WFTDGQ 494 >gi|197335920|ref|YP_002155240.1| transcription termination factor NusA [Vibrio fischeri MJ11] gi|197317410|gb|ACH66857.1| transcription termination factor NusA [Vibrio fischeri MJ11] Length = 495 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 314/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE VEN T +IS++ A+ D +I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVENVENPTLEISIEAAQFEDETIEVGGYIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F D GE+I+G VK+V +IVDLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + + Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ L G+ T+EDLA VD+L Sbjct: 422 EESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 472 -------NLTEERAGELIMAAR-NICWFSDEE 495 >gi|59711092|ref|YP_203868.1| transcription elongation factor NusA [Vibrio fischeri ES114] gi|59479193|gb|AAW84980.1| transcription termination/antitermination L factor NusA [Vibrio fischeri ES114] Length = 495 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 200/512 (39%), Positives = 314/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE VEN T +IS++ A+ D +I+IGG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F D GE+I+G VK+V +IVDLGN ++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + + Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ L G+ T+EDLA VD+L Sbjct: 422 EESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 472 -------NLTEERAGELIMAAR-NICWFSDEE 495 >gi|296108417|ref|YP_003620118.1| N utilization substance protein A [Legionella pneumophila 2300/99 Alcoy] gi|295650319|gb|ADG26166.1| N utilization substance protein A [Legionella pneumophila 2300/99 Alcoy] Length = 492 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 209/510 (40%), Positives = 327/510 (64%), Gaps = 23/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR Sbjct: 2 SKELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRY 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVR Sbjct: 62 WDVVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV Sbjct: 122 EAERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV Sbjct: 182 RAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+D Sbjct: 242 TNDGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 302 EDTHTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTMEEFESKNQEESSKIVNLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + + Sbjct: 362 TSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 422 SSGKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE-------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 ---------GISEEKAGALIMKAREP--WF 491 >gi|54295603|ref|YP_128018.1| transcription elongation factor NusA [Legionella pneumophila str. Lens] gi|53755435|emb|CAH16931.1| Transcription elongation protein nusA [Legionella pneumophila str. Lens] gi|307611645|emb|CBX01332.1| transcription elongation protein nusA [Legionella pneumophila 130b] Length = 492 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 209/510 (40%), Positives = 327/510 (64%), Gaps = 23/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR Sbjct: 2 SKELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRY 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVR Sbjct: 62 WDVVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV Sbjct: 122 EAERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV Sbjct: 182 RAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+D Sbjct: 242 TNDGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 302 EDTHTMDLAVVKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + + Sbjct: 362 TSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 422 SSGKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE-------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 ---------GISEEKAGALIMKAREP--WF 491 >gi|88797622|ref|ZP_01113211.1| N utilization substance protein A [Reinekea sp. MED297] gi|88779794|gb|EAR10980.1| N utilization substance protein A [Reinekea sp. MED297] Length = 503 Score = 560 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 200/515 (38%), Positives = 322/515 (62%), Gaps = 24/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM--SDIRVEINPETGDISLF 63 E+L + DAVA EK + RDV+ M ++ AA+ D+ V I+ +TG+ F Sbjct: 8 SKEILLVVDAVANEKGVSRDVIFDAMELALATAAKKRLDDEGEPDVYVVIDRKTGEYETF 67 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R EV+ + V Q + + A + D ++ G V + FGR++ Q+AKQ+I+QK Sbjct: 68 RRWEVMGDDVVPELGSQWTTEEAHEVDTNLKPGDVYEVQIENEGFGRISAQAAKQIIVQK 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGD 180 VR+AER R ++++VGE+++GTVK+V +I+DLGN ++ V+ RD+ I RE R D Sbjct: 128 VRDAERARIVDNYRERVGEMVTGTVKKVTRDALIIDLGNNAEAVLPRDQMIGREAFRLAD 187 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ + +++ E RGPQ++LSRT + +V+LF +EVPEI ++++++ +RDPGSRAK+A Sbjct: 188 RVRAVLQEIKSEGRGPQLVLSRTSNEMLVELFRIEVPEIQEELIEIRSCARDPGSRAKIA 247 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V Sbjct: 248 VKTNDGRIDPVGACVGMRGSRVQAVSNELGNERVDIILWDDNPAQLVINAMAPAEVASIV 307 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +EV V ++ L++AIGR GQNVRLA+ LTGW I+++TE+E ++++ + Sbjct: 308 MDEDTNTMEVAVAEDNLAIAIGRNGQNVRLAADLTGWIINVMTEDEAGARQEQEAGQLVS 367 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + VD+ +A +LV EGF +EE+A V I+E+ I+GF+E+ E++ RA++ L Sbjct: 368 HFVEKLGVDDELAMILVEEGFTTLEEVAYVPINEMLDIDGFEEDLVNELRQRAKDELLTQ 427 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++++ E+L + G+ + L NG+ +MED+A S+D+L+ +S Sbjct: 428 ELATEERLDSAEPQEDLLGLDGMTDHLARVLASNGVVSMEDVAELSIDELMEFS------ 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +D +I+ AR W E E Sbjct: 482 -----------GLDEDASGKLIMAARAP--WFENE 503 >gi|170696460|ref|ZP_02887586.1| NusA antitermination factor [Burkholderia graminis C4D1M] gi|170138613|gb|EDT06815.1| NusA antitermination factor [Burkholderia graminis C4D1M] Length = 491 Score = 560 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|307730029|ref|YP_003907253.1| transcription termination factor NusA [Burkholderia sp. CCGE1003] gi|307584564|gb|ADN57962.1| transcription termination factor NusA [Burkholderia sp. CCGE1003] Length = 491 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|330722350|gb|EGH00207.1| Transcription termination protein NusA [gamma proteobacterium IMCC2047] Length = 503 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 207/521 (39%), Positives = 326/521 (62%), Gaps = 27/521 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS--DIRVEINPETGDISLF 63 E+L +A+AV+ EK + V++ + ++ A R YG DIRV I+ TGD + Sbjct: 2 SKEVLLVAEAVSNEKGVPESVIIEALELALATATRKRYGEDEQVDIRVTIDRRTGDYESY 61 Query: 64 RLLEVVEEVENY-----TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R V+ + + T ++ A+ +D S+++G V + + ++FGR+A Q+AKQVI Sbjct: 62 RRWTVISDDDMDIEFHDTMHLTPAEAKKKDASLEVGDVWEEQIENVEFGRIAAQTAKQVI 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 +QKVREAER + ++D+VGE+++GTVK+V VI+DLGN ++ + RD I +E R Sbjct: 122 VQKVREAERAKVVEAYRDRVGEVLNGTVKKVTRDQVIIDLGNNAEAQLTRDHLIPKEIFR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 DR+++ + V E RGPQ+++SRT P+F+++LF +EVPEI +V+++A +RD G+RA Sbjct: 182 MNDRLRALLVSVGEETRGPQLVVSRTAPEFLIELFKIEVPEIAEQVVEIRAAARDAGTRA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A VINAL PA V Sbjct: 242 KIAVKTNDGRIDPVGACVGMRGSRVQAVSNELAGERIDIVLWDDNPAQMVINALAPAEVE 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++DE+ ++V V + L++AIGR GQNVRLAS+LTGWTI+++T E+ ++++ Sbjct: 302 SIIMDEESNTMDVAVSGDNLAIAIGRSGQNVRLASELTGWTINVMTAEDAEAKQEEEMVA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM+ ++V+E +A LLV EGF +EE+A V I E+ I+GFDEE ++ RA++ L Sbjct: 362 IIERFMERLDVEEDLAVLLVEEGFTSLEEIAYVPIEEMLEIDGFDEEIVEALRLRAKDVL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++++ +++L + G+D + L G+ TMEDLA +VDDLLG Sbjct: 422 LTQAIASEEELEGTEPAQDLLEMDGMDKHLAYVLASKGVITMEDLAEQAVDDLLGIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G +++ ++I+ AR W +E+ + Sbjct: 479 --------------GLDEERAANLIMTARAP--WFAEEQES 503 >gi|295676260|ref|YP_003604784.1| transcription termination factor NusA [Burkholderia sp. CCGE1002] gi|295436103|gb|ADG15273.1| transcription termination factor NusA [Burkholderia sp. CCGE1002] Length = 491 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P+I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPNIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 RHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMGEDAAKALIMKAREH--WF 490 >gi|209520195|ref|ZP_03268966.1| NusA antitermination factor [Burkholderia sp. H160] gi|209499354|gb|EDZ99438.1| NusA antitermination factor [Burkholderia sp. H160] Length = 491 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPDIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILSDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMGEDAAKALIMKAREH--WF 490 >gi|94676752|ref|YP_589057.1| transcription termination factor NusA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219902|gb|ABF14061.1| transcription termination factor NusA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 191/511 (37%), Positives = 310/511 (60%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++R+ I+ ++GD R Sbjct: 2 NKEILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+V T +I+L+ A+ +P+ +GG + D + + F R+ Q+AKQVI+QKVR A Sbjct: 62 WLIVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRAA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+I+ G VK+V N+ +D+GN ++ +I R++ + REN R GDR++ Sbjct: 122 ERAMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y +R E RG Q+ +SRT P+ +V+LF +EVPEI ++++KAV+RDPGSRAK+AV ++ Sbjct: 182 VLYSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQL+GW +++IT E + + + + F + Sbjct: 302 TQIMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E +A +L+ G + +EELA V I E+ I+ DE E++ +A++ + + IT+ Sbjct: 362 TLNINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTITM 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 Q+ ++L + ++ I L GI T+E+LA +DDLL Sbjct: 422 QENNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q +I+ AR K+ W + Sbjct: 472 -------GLSSEQAGELIMAAR-KICWFGDQ 494 >gi|237748745|ref|ZP_04579225.1| transcription elongation protein [Oxalobacter formigenes OXCC13] gi|229380107|gb|EEO30198.1| transcription elongation protein [Oxalobacter formigenes OXCC13] Length = 519 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 203/468 (43%), Positives = 312/468 (66%), Gaps = 5/468 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LE+LQ+ DA+A EK++D+++VL + ++ A + Y +DIRV I+ TG++ FR Sbjct: 2 SLEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDADIRVSIDRTTGEVETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ ++ A+++ P I++ + D + +D GR Q KQ+++Q++ Sbjct: 62 WHVVPDEAGLQQPDQEMLYFEAKEQFPDIEVDDYIEDHIESIDLGRRFAQDTKQIVLQRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV Sbjct: 122 RDAEREQVLQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRVGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AVF Sbjct: 182 RAYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVF 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 +SD IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 TSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + F Sbjct: 302 EDKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKSALEKAELQKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VD+ +A +L+ EGF +EE+A V I E+ IE FDE+T EI+ RAR+ L I Sbjct: 362 MERLDVDQEVADILIEEGFTALEEIAYVPIGEMLEIEAFDEDTVNEIRQRARDALITEAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + + L ++ G+D ++ LG G+KT++ A + D+ Sbjct: 422 ASEEGMAGMEEE--LVNLEGMDRQVAGKLGLAGVKTLQRFAELAYDEF 467 >gi|90416134|ref|ZP_01224066.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2207] gi|90331859|gb|EAS47073.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2207] Length = 497 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 204/513 (39%), Positives = 325/513 (63%), Gaps = 22/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK +D++V+ + ++ A + Y ++IRV I+ ETGD FR Sbjct: 2 SKEILMVAEAVSNEKGVDQEVIFQAIEQALSTATKKRYDEGANIRVVIDRETGDYDSFRW 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV + + Q + + A ++DP++ +G + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WDVVADDVMAELGTQFTTEEAHEKDPTLAVGDTFEETVENIAFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER+ F +++GE+++GTVK+V ++IVD G N++G++ R+E + RE R DR Sbjct: 122 EAERELIISRFVNRIGEMLNGTVKKVTRDHIIVDFGDNAEGLLPREELVGREIFRINDRT 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + +R + RGPQ+L+SR + +V+LFH+EVPEI GI+++K +RDPG RAK+AV Sbjct: 182 RVILTSIRDDTRGPQLLVSRAASEMLVQLFHIEVPEISEGIIEIKGAARDPGQRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D+ IDPVGACVGMRG+RVQAV +L DE+IDI++W + A VINA+ PA V +V+D Sbjct: 242 SKDARIDPVGACVGMRGARVQAVSNDLDDERIDIILWDDNPAQLVINAMAPAEVESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V +E L+ AIG+ GQNVRLAS+LTGWTI+++T ++ +Q++ + Sbjct: 302 EDSHSMDVAVSEENLAQAIGKGGQNVRLASELTGWTINVMTMDQAQEKQQEESLNVVENL 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M A+++DE +A +LV EGF +EE+A V + E+ IEGFDE A E++ RA++ L + + Sbjct: 362 MTALDIDEDVAIVLVEEGFTSLEEVAYVPLEEMIDIEGFDEGIATELRARAKDALLTMAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ +E+L ++ G++ + L GI TMEDLA +VDDL+ Sbjct: 422 ASEEQLANAQPAEDLLTMDGMNDALANTLAGKGIITMEDLAEQAVDDLMEVD-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR W + Sbjct: 474 ---------GMDEETAAALIMTARAP--WFVDQ 495 >gi|289825801|ref|ZP_06544969.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 472 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 192/482 (39%), Positives = 297/482 (61%), Gaps = 24/482 (4%) Query: 40 RSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD 99 + Y D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D Sbjct: 8 KKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVED 67 Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL- 158 + + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++ Sbjct: 68 QIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIK 127 Query: 159 -----GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF Sbjct: 128 SEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFR 187 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+ Sbjct: 188 IEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGER 247 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQ Sbjct: 248 IDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQ 307 Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 L+GW ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + Sbjct: 308 LSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMK 367 Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 E+ I+G DE T ++ RA+ L + + + + +++L ++ G+D + L Sbjct: 368 ELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAA 427 Query: 454 NGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G+ T+EDLA +DDL G ++ +I+ AR + W Sbjct: 428 RGVCTLEDLADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFG 469 Query: 514 KE 515 E Sbjct: 470 DE 471 >gi|88812961|ref|ZP_01128204.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231] gi|88789739|gb|EAR20863.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231] Length = 500 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 202/513 (39%), Positives = 320/513 (62%), Gaps = 23/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK + ++V+ + ++ A R + D RV +N TG+ FR Sbjct: 2 SKEVLLVVDAISNEKGVSKEVIFEAVEAALASATRKRHPEDIDARVAVNRTTGEYETFRR 61 Query: 66 LEVVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV++ E+ +I+L AR ++P+I+ G + P+ ++FGR+A Q+AKQVI+QKV Sbjct: 62 WLVVDDAESVQVPQREIALAEARAQEPTIEAGQYIEQPMESVEFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +KD+ GE+++G VKRVE G+V +DLG N++ I R+E I RE +RPGDR Sbjct: 122 REAERAKVITAYKDRQGELMTGIVKRVERGHVYLDLGGNAEAFIAREEMIPREAVRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ ++ ++ E RGPQ+++SRT P+F+++LF +EVPE+ ++Q+ +RD G RAK+AV Sbjct: 182 LRGWLREICTEARGPQLVVSRTAPEFLIELFKLEVPEVGQDLLQLMGAARDAGQRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ IDPVGACVGMRGSRVQAV EL E+IDI++W + A +VINA+ PA V +++ Sbjct: 242 RALDARIDPVGACVGMRGSRVQAVSNELAGERIDIILWDENPAQYVINAMAPAEVESIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V +EQLS AIGR GQNVRLA +LTGW ++++T EE + + +E + Sbjct: 302 DEDRHSMDIAVSQEQLSQAIGRGGQNVRLAGELTGWELNVMTSEEAQAKSEAEADELIEL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++VDE +A +L EGF+ VEE+A V ++E IE FDE+ ++ RAR+ L + Sbjct: 362 FVSSLDVDEEVAEILAREGFSSVEEIAYVPVAEFLEIEEFDEDIVELLRNRARDALLTRE 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + EL ++ G+D + G+ T+EDLA SVD+L+ Sbjct: 422 LAEVEQDSPAKPTPELLALEGMDEALAWQFAARGVVTVEDLADQSVDELMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G + + ++I+ AR W Sbjct: 475 ----------GMDEQRAAALIMKAREP--WFAD 495 >gi|297180708|gb|ADI16917.1| transcription elongation factor [uncultured gamma proteobacterium HF0010_16J05] Length = 512 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 203/520 (39%), Positives = 320/520 (61%), Gaps = 28/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V++EK + +DV+ + ++ A + YG ++ RV I+ E+G+ FR Sbjct: 2 SKEILLVVESVSHEKGVSKDVLFGAIESALAVATKKKYGENAEFRVAIDRESGEYETFRT 61 Query: 66 LEVVE---------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VV+ N Q S+ A+ P +G V+ + + + FGR+A Q+AKQ Sbjct: 62 WAVVDFGEIEAEEEAEVNPEAQYSVDQAQSFKPGAVLGDVIEEQVESVAFGRIAAQTAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISREN 175 VI+QKVREAER + + +V E++SGTVK++ +VIVDLGN ++G++ R+ I RE Sbjct: 122 VIVQKVREAERAQVVEAYTSRVNELVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREI 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 R GDR+++ + ++R + RGPQ++LSRT +V+LF +EVPEI ++Q+ +RDPGS Sbjct: 182 FRVGDRLRAMLVEIRPDNRGPQLILSRTARSMLVELFKVEVPEISEDVIQILGAARDPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA Sbjct: 242 RAKIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAE 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +VLDE+ +++ V +E L+ AIGR GQNVRLAS L GW+++I+TEEE + + + Sbjct: 302 VASIVLDEETHAMDIAVTEENLAQAIGRGGQNVRLASDLCGWSLNIMTEEEAAEKLEAES 361 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ FM+A++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE E++ RA++ Sbjct: 362 SKFISEFMEALSVDEDVAAVLVEEGFTTLEEIAYVPVEEVMAIEGFDEEIVNELRNRAKD 421 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L I ++ + + +++L + G++ ++ L + + TMEDLA +V +LL Sbjct: 422 ALLTRAIASEEALGDNKPADDLLEMEGMERELAFKLAAHEVITMEDLAELAVPELLEIDP 481 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +D+ ++I+ AR W +E Sbjct: 482 E----------------LSEDKAAALILKAREP--WFAEE 503 >gi|21672641|ref|NP_660708.1| transcription elongation factor NusA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090841|sp|Q8K9H0|NUSA_BUCAP RecName: Full=Transcription elongation protein nusA gi|21623276|gb|AAM67919.1| N utilization substance protein A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 495 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 187/509 (36%), Positives = 304/509 (59%), Gaps = 19/509 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV IN +TG+ S FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVSINRKTGNFSTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ V + T +I+L+ A + I V D + ++F R+ Q+AKQVI+QKVREA Sbjct: 62 WMVVDIVVHPTKEITLEAACFEGEQVKINDYVEDKIESVNFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ +G+II+G VK++ N+ +DLGN ++ +I R+ + REN RPGDR++ Sbjct: 122 ERAMLVDQFRKHIGQIITGIVKKISRDNLTLDLGNNAEALILREGMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ LSR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYGVYPEARGAQLFLSRSKTEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVVSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ F + Sbjct: 302 HHTMDIAVDSSNLAQAIGRNGQNVRLASQISGWELNVMTTEDLRSKHKEEAYAAFNIFKK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +NV E + LV EGF+ +EELA + ++E+ I E ++ A+ L +++ Sbjct: 362 NLNVSEKVIKTLVKEGFSSLEELAYIPLNELLEINNLTEREVQLVREGAKNGLLLLELDQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 + +I+ + + L ++ G++ + + L E I T+E+LA +DDL+ Sbjct: 422 KNQIKNKKIEQALLNVNGMNELLALKLAEKNIFTVEELANQGIDDLIDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 472 -------NLNSEQAGLLIMAAR-NICWFS 492 >gi|330816693|ref|YP_004360398.1| NusA antitermination factor [Burkholderia gladioli BSR3] gi|327369086|gb|AEA60442.1| NusA antitermination factor [Burkholderia gladioli BSR3] Length = 491 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+VL + ++ A++ L+ ++IRV I+ E+G+ +R Sbjct: 4 EVLMLVDALAREKNVDKDIVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETYRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ I++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKAEIEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSDDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRSLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+ + T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHSVATRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GVEEEAAKALIMKAREH--WF 490 >gi|91782988|ref|YP_558194.1| transcription elongation factor NusA [Burkholderia xenovorans LB400] gi|296158771|ref|ZP_06841600.1| NusA antitermination factor [Burkholderia sp. Ch1-1] gi|91686942|gb|ABE30142.1| NusA antitermination factor [Burkholderia xenovorans LB400] gi|295890976|gb|EFG70765.1| NusA antitermination factor [Burkholderia sp. Ch1-1] Length = 491 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|254482493|ref|ZP_05095732.1| NusA N-terminal domain family [marine gamma proteobacterium HTCC2148] gi|214037184|gb|EEB77852.1| NusA N-terminal domain family [marine gamma proteobacterium HTCC2148] Length = 497 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 203/513 (39%), Positives = 321/513 (62%), Gaps = 22/513 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK + ++ + ++ A + Y SDI V I+ TGD R Sbjct: 3 KEILLVAEAVSNEKGVAESIIFEAIELALATATKKRYDEESDIEVTIDRSTGDYVTKRRW 62 Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + E Q + + A ++D S+ G + + + + FGR+A Q+AKQVI+Q+VR+ Sbjct: 63 LVVPDDELALLGTQFTTEEAAEQDTSLQPGDIYEEVIDNVGFGRIAAQTAKQVIVQRVRD 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER++ ++ +VGE+++GTVK+V NVIVDLGN ++G++ R E + RE R DRV+ Sbjct: 123 AEREQVVEQYMGRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPRSELVGRETFRVNDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q++A +RDPGSRAK+AV + Sbjct: 183 AILKEISTEARGPQLILSRACPEMLIELFKIEVPEISEEVIQIRAAARDPGSRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE Sbjct: 243 NDQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMAPAEVESIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D G ++V V +E L+ AIGR GQNVRLA++LT WTI++++ EE + + + E F Sbjct: 303 DSGTMDVAVSEENLAQAIGRSGQNVRLAAELTEWTINVMSLEEAADKHEAEAGEVIGVFC 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +A++VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ A E++ RA++ L I Sbjct: 363 KALDVDEDVAEILVEEGFTTLEEVAYVPLEEMTAIDGFDEDIAEELRARAKDALLTQAIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ +E+L ++ G+D + L I TMEDLA +V+DL+ Sbjct: 423 SEEQLGANEPAEDLLTMEGMDRHLAYILSSREIVTMEDLAEQAVEDLMDIE--------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR W + + Sbjct: 474 --------DMTEERAGELIMTARAP--WFAEAE 496 >gi|33152524|ref|NP_873877.1| transcription elongation factor NusA [Haemophilus ducreyi 35000HP] gi|33148747|gb|AAP96266.1| transcription termination-antitermination factor nusA, N utilization substance protein A [Haemophilus ducreyi 35000HP] Length = 493 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 194/510 (38%), Positives = 318/510 (62%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ + + G DIRV IN +TG+ FR Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKGIDIDIRVVINRKTGEFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+V N T +ISL A+ DP++ +G V D + + F R+ +Q+A+QVI K+REA Sbjct: 62 WLIVEQVHNMTREISLAAAQYEDPNVQLGDFVEDEIESIPFDRITMQTARQVISTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER++ +F+ ++ I++ TVK+V +I+DLGN ++ VI R++ + REN RPGDR++ Sbjct: 122 ERNKVIEQFRTQLNCIVTATVKKVNREQIILDLGNQAEAVIIREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y ++ E +GPQ+ ++R P + LF +EVPEI ++++K SRD GSR+K+AV S+ Sbjct: 182 VLYAIKPESKGPQLFVTRAKPVMLEVLFKLEVPEIGEEVIEIKGASRDAGSRSKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMSPAEVSHIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLA+QLTGW+++++T E+ + Q + N+ F+ Sbjct: 302 KHAMDIAVETKNLAQAIGRNGQNVRLATQLTGWSLNVMTTEDLNEKHQAEDNKIIDLFVT 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE-TAVEIQGRAREYLEGIDIT 423 ++ +DE AHLLV EGF+ +EE+A + ++E+ I+G D+E A E+Q RA+ + + Sbjct: 362 SLQIDEEFAHLLVDEGFSSLEEIAFIAVNELVDIDGIDDENLAEELQTRAKAAITEKALA 421 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ ++ + + L ++ G++ I L E GI T+E+LA +DDL E Sbjct: 422 EEEALKRADIEDRLLNLDGLERHIAFKLAEKGIVTLEELAEQGIDDLADIQE-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +I++AR ++ W Sbjct: 474 ---------LSAEKAGELIMNAR-QICWFS 493 >gi|78485466|ref|YP_391391.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2] gi|78363752|gb|ABB41717.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2] Length = 495 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 200/513 (38%), Positives = 309/513 (60%), Gaps = 24/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + + ++ EK ++++++ + ++ A R + D RV I+ TGD FR Sbjct: 2 SKEVLAVVEIMSNEKGVEKEIIFEAIEAALATATRKSHNDEIDARVSIDRHTGDYETFRR 61 Query: 66 LEVVEE-VENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EV+E+ VE I A D +P I+ G + +P+ ++FGR+ Q+AKQVIIQK Sbjct: 62 WEVIEDDVEIEDHVGWYIRHMDAVDIEPHIEPGEFIEEPMESIEFGRIGAQTAKQVIIQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + E+ ++GEI++G VKR++ G+VI+DLG N D VI R E I+REN + GD Sbjct: 122 VREAERKKVVEEYSKRIGEILTGQVKRIDRGDVILDLGDNVDAVIPRSELINRENFKMGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+ DV RGPQ+ +SR + +++LF +EVPEI + ++ + + +RD G RAK+A Sbjct: 182 RVRAYVQDVSFRPRGPQIFMSRACKEMLMELFKIEVPEIGDDLIDIMSAARDVGLRAKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D +DP+GACVGMRG RVQAV EL E+IDI++W + A FVINA+ PA VT ++ Sbjct: 242 VRANDPRLDPIGACVGMRGGRVQAVTNELNGERIDIILWDSNDAQFVINAMAPAEVTSIM 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V EQLS AIG+ GQN+RLA++LTGW +++++E + + + + + Sbjct: 302 VDEDKHTMDLAVDDEQLSQAIGKNGQNIRLATELTGWELNVMSETDMAAKHETESKGQMD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ + VDE +A +LVAEGF +EE+A V +E+ IEGFDEE ++ RA++ L Sbjct: 362 LFVNGLEVDEELAEVLVAEGFTTLEEVAYVPAAEMLEIEGFDEEIVAALKERAKDALLTQ 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I ++K +++L + G+ ++ L GI T EDLA D+LL E Sbjct: 422 AIANEEKTAMAEPAQDLLDLEGMTEEMAKTLASKGIITQEDLAELGTDELLEIVEMDA-- 479 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D +I+ AR W E Sbjct: 480 ---------------DAASELILKARAP--WFE 495 >gi|152978792|ref|YP_001344421.1| transcription elongation factor NusA [Actinobacillus succinogenes 130Z] gi|150840515|gb|ABR74486.1| NusA antitermination factor [Actinobacillus succinogenes 130Z] Length = 511 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 202/528 (38%), Positives = 317/528 (60%), Gaps = 37/528 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----------GTMSDIRVEIN 54 E+L A+AV+ EK++ ++V+ + +I + + + + D+RV I+ Sbjct: 2 SKEILLAAEAVSNEKALPKEVIFEALEAAIALSTKKKHAQKQERLGVDKPSEIDVRVAID 61 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 P+TG+ FR VVEEV N T +I+L+ AR DP+I +G VV D + + F R+ +Q+A Sbjct: 62 PKTGEFDTFRRWTVVEEVVNPTREITLEAARLDDPAIQLGDVVEDQIESVAFDRITMQTA 121 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-------GNSDGVIRR 167 +QVI K+R+AER + +F + G+I+ GTVK+V +++++L ++ VI R Sbjct: 122 RQVISTKIRDAERSKVVEQFLSEEGKIVIGTVKKVNRESIVLELLGNKEDPAKAEAVIAR 181 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 ++ I REN RPGDRV+ +Y V E +G Q+ ++R+ P + +LF +EVPEI I+++K Sbjct: 182 EDMIPRENFRPGDRVRGVLYKVSPESKGAQLFVTRSKPIMLEELFRLEVPEIGEQIIEIK 241 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 +RD GSRAK+AV SSD IDPVGACVGMRGSRVQ++ EL E++DIV+W + A +V Sbjct: 242 GSARDAGSRAKIAVKSSDKRIDPVGACVGMRGSRVQSITNELGGERVDIVLWDENPAQYV 301 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 INA+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T EE Sbjct: 302 INAMAPADVSSIVVDEDNHSMDIAVEASNLAQAIGRNGQNVRLATQLTGWTLNVMTTEEL 361 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETA 406 + Q + N+ FM A+ +DE A +LV EGF +EELA V +SE+ +I+G DE+ Sbjct: 362 AQKHQAEDNKILNLFMTALEIDEDFAQILVDEGFTKLEELAYVSVSELTAIDGLEDEDLV 421 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E+Q RA++ + + +K + + + L ++ G++ + L E I T+E+LA Sbjct: 422 EELQTRAKDAITAAALAEEKALENAQIEDRLLNLEGMERHLAFKLAEKQITTLEELAEQG 481 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 VDDL E ++ +I+ AR + W + Sbjct: 482 VDDLADIEE-----------------LSAEKAADLIMAAR-NICWFGE 511 >gi|221134838|ref|ZP_03561141.1| transcription elongation factor NusA [Glaciecola sp. HTCC2999] Length = 494 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 316/514 (61%), Gaps = 25/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + ++ + + ++ A + ++RV I+ TGD FR Sbjct: 2 SKEILLVAEAVSNEKQVPKEKIFEALEFALSTATKKKNEGEIEVRVAIDRATGDFDTFRQ 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN ++++ A+ +P I IG V + + + F R+ Q+AKQVI QKV Sbjct: 62 WLVIPDDQVQENPYAEMTISAAQIDEPEIQIGDFVEEQIESIKFDRITTQTAKQVIFQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + E++D+VGE+++GTVK+V NVI+DLGN ++GVI RD+ + REN RPGDR Sbjct: 122 REAERAQMIAEYEDRVGELVTGTVKKVNRDNVIIDLGNNAEGVIYRDDMLPRENFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMIVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV +EL E++DIV+W ++ FVINA+ PA V +V Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELGGERVDIVLWDEEAPQFVINAMAPAEVASIVA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIG+ GQNVRLASQLTGW ++++T E+ +Q + + Sbjct: 302 DEDTMTMDVAVEPDNLAQAIGKSGQNVRLASQLTGWELNVMTIEDLEKKQQDESAQIIDV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++DE A +L +EGF +EE+A V +SE+ IEG DE+ E++ RAR YL Sbjct: 362 FVTGLDIDEEFAGVLASEGFTSLEEIAYVPVSELLEIEGLDEDIIEELRNRARAYLTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ L EEL ++ G+ ++I VAL + G+ +E+LA D++ Sbjct: 422 LADEE---SLEPKEELLNLAGMTNEIAVALAKQGVTDLEELAEQGTDEICDIE------- 471 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + I+ AR + W +E Sbjct: 472 ----------GLDEKSAGDFIMAAR-NIKWFNEE 494 >gi|187923623|ref|YP_001895265.1| transcription elongation factor NusA [Burkholderia phytofirmans PsJN] gi|187714817|gb|ACD16041.1| NusA antitermination factor [Burkholderia phytofirmans PsJN] Length = 491 Score = 556 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV+I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|91774422|ref|YP_544178.1| transcription elongation factor NusA [Methylobacillus flagellatus KT] gi|91708409|gb|ABE48337.1| NusA antitermination factor [Methylobacillus flagellatus KT] Length = 488 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 208/507 (41%), Positives = 325/507 (64%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ + V+ + + ++ A + + +D+RVEI+ ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKTVIFTALELALASATKKRFTEDADVRVEIDRDSGEYRSFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE +EN QI++ AR +G + +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 VVEADALENPAAQIAVDDARA--EGFAVGDYIEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ R++ I +ENLR GDRV++Y Sbjct: 122 EREQILDDFLARKEHLVTGVIKRMEKGNAIIEVGRLESVLPREQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ +RDPG R+K+AV S+D Sbjct: 182 LSRIERSGRGPQLILSRVAPEFLIKLFELEVPEIEEGLLEIKSAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS D A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMDPAQFVINAMAPAEVSGIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++VIV +EQL+ AIGR GQNVRLAS+LTGWT++I+TEEE + +++ + Q F++ Sbjct: 302 HSMDVIVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEEEAAKKSEEEHSSILQLFVEK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E++ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFSTLEEIAYVPLAEMSEIEAFDEDTINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K E SE+L + G+D L G+ TM D Sbjct: 422 EKAGEA--SEDLLHMEGMDEATARTLAGKGVATM-----------------DDLADLAVD 462 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 + G ++ + +I+ AR W Sbjct: 463 DLVELTGMDVERAKQLIMTARAP--WF 487 >gi|329915249|ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gi|327544954|gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 197/466 (42%), Positives = 304/466 (65%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ +TG FR Sbjct: 4 EVLLLVDALAREKNVDKDIVFGALEHALSQATKKRYEGDVDIRVTIDRDTGLFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I A ++ I++ + +P+ +DFGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEILHFEALEQISDIEVDDHIEEPIESVDFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILQDFLERGDSMVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +I V R RGPQV+LSRT P+F++KLF +EVPEI G++ +K+ +RD G RAK+AVF+S Sbjct: 184 FILRVDRNARGPQVILSRTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + G+ + L ++ G+D LG G+KT+ +G + D+ Sbjct: 424 EEGLE--GMDDALATMEGMDRVTAGKLGLAGVKTLAAFSGLAYDEF 467 >gi|114331633|ref|YP_747855.1| transcription elongation factor NusA [Nitrosomonas eutropha C91] gi|114308647|gb|ABI59890.1| NusA antitermination factor [Nitrosomonas eutropha C91] Length = 490 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 208/508 (40%), Positives = 320/508 (62%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG+ FR Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHARDDIDVRVSIDRDTGEFQCFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V + VE+ QI+L A ++P G + + + F R+ Q+AKQVI QK+R+A Sbjct: 64 IVADDVVEHPERQIALVEAVKQNPQSVPGEYTEELMEDVTFDRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ ++SG +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y Sbjct: 124 EREQNLNDFLERGEYLVSGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT F+VKLF +EVPEI GI++++A +RDPGSRAK+AV S+D Sbjct: 184 LLKIDRAVRGPQLVLSRTSADFLVKLFELEVPEIEEGILEIRAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DP+G CVGMRGSRVQAV EL E++DI+ WS D ATFV+NAL PA+++ +V+DED Sbjct: 244 ARVDPIGTCVGMRGSRVQAVTGELAGERVDIIQWSDDQATFVVNALAPAVISSIVMDEDK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +E L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ + FM+ Sbjct: 304 HSMDVVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTVEESHEKSEEEAASICELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I + Sbjct: 364 LDVDEEVGRILVDEGFSTLEEIAYIPIEEMLEIQEFDHETIEELRNRARNVLLTAAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +KI SE L ++ G+D + L GI T E+LA + DDL+ + Sbjct: 424 EKIGHA--SEALLALEGMDIDLVRELAAKGISTQEELADLAADDLVELT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +II AR W Sbjct: 471 ------GVDLDRASKIIIKAREP--WFT 490 >gi|118594129|ref|ZP_01551476.1| NusA antitermination factor [Methylophilales bacterium HTCC2181] gi|118439907|gb|EAV46534.1| NusA antitermination factor [Methylophilales bacterium HTCC2181] Length = 488 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 202/505 (40%), Positives = 328/505 (64%), Gaps = 21/505 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ RD++ + + ++ A + + DIRVEI+ E+G+ FR Sbjct: 4 EILLLVDALAHEKNVARDIIFTALELALASATKKKFEADVDIRVEIDKESGEYESFRCWT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ + L DR +++G V+ + + ++FGR+ Q+AKQVI+QKVREAER Sbjct: 64 IVEDELLEIPEAELSPTDDRAKDLEVGDVIKEAIDSVEFGRIGAQAAKQVILQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ +F + +++SG ++R+E GN I+++G D V+ RD I +ENLR GDRV++ + Sbjct: 124 EQILNDFLARDEKLVSGQIRRMERGNAIIEVGRLDAVLPRDHMIPKENLRVGDRVRAILS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + RGPQ++LSRT P+F+++LF +EVPEI G++++ + SRDPG R+K+AV ++D Sbjct: 184 KIETGMRGPQLILSRTAPEFLIRLFELEVPEIEEGLLEIMSASRDPGLRSKIAVKANDQR 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 244 LDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSIEPAQFVINAMAPAEVSSIVVDEDKHS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++++V ++QL+ AIGR GQN+RLAS+LTGW ++I+TEEE ++++ +Q F++ ++ Sbjct: 304 MDLVVVEDQLAQAIGRNGQNIRLASELTGWELNILTEEESDQKNKEEYTSASQLFIEKLD 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF+ +EE+A V + E+ IE FDE+T E++ RA + I ++ Sbjct: 364 VDEDVADILVQEGFSSIEEVAYVPLEEMVQIEAFDEDTVNELRSRASAAILTAAIAKEES 423 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 + + +E+L S+ G+D + + GI TMEDLA SVD+L Sbjct: 424 VVD--PAEDLKSMDGMDIDMAKLMASKGIVTMEDLAELSVDEL----------------- 464 Query: 488 LSSLGTPKDQVESMIIHARYKMGWI 512 L + +++ +++I+ AR W Sbjct: 465 LELVKIDEEKAKTLIMTARAP--WF 487 >gi|325981567|ref|YP_004293969.1| NusA antitermination factor [Nitrosomonas sp. AL212] gi|325531086|gb|ADZ25807.1| NusA antitermination factor [Nitrosomonas sp. AL212] Length = 490 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 321/508 (63%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EKS+++++V + + ++ A + + + R+ I+ ETGD FR Sbjct: 4 EILLLVDALAREKSVEKEIVFTALELALSSATKKRFQEDIETRISIDRETGDHQSFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ Q++L A D +I +G + PL P++FGR+ Q+AKQVI QK+REA Sbjct: 64 VVNDDSVEDSARQVALSDAIKIDANIQVGDHLEKPLEPIEFGRIGAQAAKQVIFQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ +I+GT+KR+E GN I++ G + ++RD+ I +ENLR GDRV++Y Sbjct: 124 EREQTLNDFLEREDYLINGTIKRMERGNAIIESGKIEAELQRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V R RGPQ+ LSR P+F++KLF +EVPEI G++++KA +RDPGSRAK+AV S+D Sbjct: 184 LYKVDRAARGPQLKLSRISPEFLMKLFELEVPEIEEGLLEIKAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRGSRVQAV++EL E++DIV+WS D ATF+INAL PA ++ +++DE+ Sbjct: 244 QRIDPIGTCVGMRGSRVQAVISELAGERVDIVLWSDDPATFIINALAPAEISSIMVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ ++ Q FMQ Sbjct: 304 HSMDIVVDDDNLAQAIGRGGQNVRLASELTGWELNIMTIEESKTKHEQETSQICQLFMQK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE IA +L+ EGF +EE+A + ++E+ IE DEET EI+ RAR L I + Sbjct: 364 LDVDEEIAEILMQEGFVSLEEVAYIPLNEMLEIESLDEETVNEIRNRARNVLLTDAIANE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ V+E+L SI G+D I L GI T D Sbjct: 424 EKVE--HVAEDLLSIEGMDINIIRELAAKGIIT-----------------QSDLADLAAD 464 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G + +II AR W Sbjct: 465 DLVEMTGIDIELANQLIIKARAP--WFT 490 >gi|34496916|ref|NP_901131.1| transcription elongation factor NusA [Chromobacterium violaceum ATCC 12472] gi|34102772|gb|AAQ59136.1| N utilization substance transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 492 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 212/510 (41%), Positives = 325/510 (63%), Gaps = 24/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA+A EK++ +DVV S + ++ A + + D+RVEI+ TG FR Sbjct: 4 EILLLVDALASEKNVSKDVVFSALEMALASATKKKFTDDEMDVRVEIDRHTGQYQTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ +E+ + +I L ARDRDP I++G + +P+ ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 LVVEDELLESESKEIGLIDARDRDPRIELGAFIEEPMEAVEFGRIGAQTAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ EF + ++ GT+KR+E GN IV+ G + V+ RD+ I +ENLR GDRVK+ Sbjct: 124 AEREQLLNEFLQRREHLVIGTIKRIERGNAIVECGKLEAVLPRDQMIPKENLRVGDRVKA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R+ RGPQ++LSRT P+F+VKLF +EVPEI G+++++A RDPG RAK+AV ++ Sbjct: 184 YLLRIDRQGRGPQLILSRTAPEFLVKLFELEVPEIEEGMLEIRAAVRDPGMRAKIAVKAN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ IDP G C+GMRGSRVQAV EL E++DIV+W+P+ A FVINAL PA V+++++DED Sbjct: 244 DARIDPQGTCIGMRGSRVQAVTQELAGERVDIVLWAPEPAQFVINALSPAEVSRIMVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++VIV +EQL+LAIGR GQNV+LA++LTGW ++I+T E Q + Q F+ Sbjct: 304 NHSMDVIVEEEQLALAIGRSGQNVKLAAELTGWYLNIMTVAEAEEKHQAEDAALRQLFVS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE A LV EGFA +EE+A V + E+ IEGF+EE E++ RAR+ L I Sbjct: 364 ALSVDEDTAAKLVEEGFAALEEVAYVPLEEMLEIEGFNEELVGELRSRARDALLTQAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ V+++L + G+D+++ L G+ T Sbjct: 424 EEQVEN--VADDLKDVEGLDAELVRKLAAGGVTTR-----------------DDLADLAV 464 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 D + G + ++I+ AR W + Sbjct: 465 DDLVDMTGMEAEAARAIIMKAREH--WFNQ 492 >gi|307546728|ref|YP_003899207.1| transcription elongation factor NusA [Halomonas elongata DSM 2581] gi|307218752|emb|CBV44022.1| transcription elongation factor NusA [Halomonas elongata DSM 2581] Length = 497 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 206/515 (40%), Positives = 316/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + DA++ EK + R+V+ + ++ A+R + + +RV I+ TGD FR Sbjct: 2 SKEILAVVDAISNEKGVPREVIFEAVEAALASASRKRFEDEEASVRVHIDRNTGDYETFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVVE+ + QI L A RDP + +G VV + + FGR+A Q+AKQVI+QKV Sbjct: 62 RWEVVEDDDFDGPDAQIKLSFAERRDPPLGLGDVVEERIENAVFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++ GE+++G VK+ +I+DLG N++ + R E I E R +R Sbjct: 122 REAERAEVVSLYAEREGELVAGIVKKTTRDGLIIDLGDNAEAFLPRSEMIPGERYRMNER 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + V E RG Q++LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 182 VRALLTKVDPEARGAQLILSRTCPELIIELFKIEVPEIAEQLIEIKGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV TEL++E++DIV+W + A VINA+ PA V +++ Sbjct: 242 KTNDRRIDPVGACVGMRGSRVQAVSTELQNERVDIVLWDDNPAQLVINAMAPADVASILV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V ++ L+ AIGR GQNVRLAS+LTGW ++++TE E R ++ + + Sbjct: 302 DEDAHAMDVAVGEDNLAQAIGRSGQNVRLASELTGWRLNVMTEAEAETKRDQEIDSLVEH 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+Q ++VD+ +A LLV EGF +EE+A V + E+ IE DEE E++ RA++ L + Sbjct: 362 FIQHLDVDDDVARLLVEEGFTSLEEVAYVPVEEMLEIEELDEELIEELRARAKDELLNLA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++++ +++L ++ G++ + L GI TMEDLA SVDDL E Sbjct: 422 IASEEELDGAQPADDLLAMDGMERHLAFILASRGIVTMEDLAEQSVDDLTDIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ S+I+ AR W E E+ Sbjct: 476 -----------LDDERAASLIMTARAP--WFESEQ 497 >gi|300312899|ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gi|300075684|gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 196/466 (42%), Positives = 306/466 (65%), Gaps = 5/466 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D++VV + ++ +A + Y DIRV I+ E+G+ FR Sbjct: 4 EILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ ++ L A+++ P I++ + DP+ ++FGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F + +++GT+KR+E G+ I++ G + + RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQV+LSRT P+F++KLF +EVPEI G +++K+ +RDPG RAK+AV+++ Sbjct: 184 YILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTA 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGF+ +EE+A V I+E+ IE FDEET E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 ++ + + + G+D + LG G+KT+ AG + D+ Sbjct: 424 EEGLEGMEEEL--INFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEF 467 >gi|219682291|ref|YP_002468675.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622024|gb|ACL30180.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086115|gb|ADP66197.1| transcription elongation factor NusA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086688|gb|ADP66769.1| transcription elongation factor NusA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 496 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 191/510 (37%), Positives = 306/510 (60%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREA Sbjct: 62 WMVVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+II+G VK++ N+++DLGN ++ +I R+ + REN RPGDR++ Sbjct: 122 ERAMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF + Sbjct: 302 CHTMDIAVDVNNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++ Sbjct: 362 NLNINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDK 421 Query: 425 QKK-IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 K I+E +EL I G+++ + + L E I T+E+LA +DDL Sbjct: 422 NKMIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDLTDIK--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 473 --------NLNSEQAGLLIMTAR-NICWFS 493 >gi|15616983|ref|NP_240196.1| transcription elongation factor NusA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681736|ref|YP_002468122.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471436|ref|ZP_05635435.1| transcription elongation factor NusA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386974|sp|P57459|NUSA_BUCAI RecName: Full=Transcription elongation protein nusA gi|25299780|pir||B84974 N utilization substance protein A [imported] - Buchnera sp. (strain APS) gi|10039048|dbj|BAB13082.1| N utilization substance protein A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624579|gb|ACL30734.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087273|gb|ADP67353.1| transcription elongation factor NusA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 496 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 191/510 (37%), Positives = 306/510 (60%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREA Sbjct: 62 WMVVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+II+G VK++ N+++DLGN ++ +I R+ + REN RPGDR++ Sbjct: 122 ERAMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF + Sbjct: 302 CHTMDIAVDINNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++ Sbjct: 362 NLNINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDK 421 Query: 425 QKK-IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 K I+E +EL I G+++ + + L E I T+E+LA +DDL Sbjct: 422 NKMIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDLTDIK--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 473 --------NLNSEQAGLLIMTAR-NICWFS 493 >gi|326794269|ref|YP_004312089.1| NusA antitermination factor [Marinomonas mediterranea MMB-1] gi|326545033|gb|ADZ90253.1| NusA antitermination factor [Marinomonas mediterranea MMB-1] Length = 496 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 194/514 (37%), Positives = 321/514 (62%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + + V+ + ++ AA+ + IRV I+ TGD + FR Sbjct: 2 SKEILLVAEAVSNEKDVPKQVIFEAVETALASAAKRRFEEDVKIRVSIDQRTGDYNTFRQ 61 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V + + ++++ + ++ + IG + + +P +FGR+A Q+AKQVI+QKVR Sbjct: 62 WNIVADEDYSYPDSELTIDDSVEQSLGLAIGEIYEEEIPSEEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + + +KVG+++ G VK+V ++IVDLG N++ + +D+ I+RE R DR+ Sbjct: 122 EAERAKVVARYSEKVGKLVHGQVKKVTRDSLIVDLGENAEAALPKDQLINREMFRMNDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R + RGPQ++LSR P+FM++LF +EVPEI +++++ SRDPG RAK+AV Sbjct: 182 RALLSEIREDGRGPQLVLSRNVPEFMIELFKLEVPEIAEEVIEIRGASRDPGLRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+D Sbjct: 242 TNDRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVID 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V + L+ AIGR GQNVRLA+ LTGW ++++T EE +Q++ + F Sbjct: 302 EDAHSMDVAVKSDNLAQAIGRNGQNVRLATSLTGWALNVMTSEEAQSKQQEESQKLIDVF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++++D+ +A LV EGF +EE+A V + E+ I+GFDE+ E++ RA+E L + Sbjct: 362 VNSLDIDDDLALQLVDEGFETLEEVAYVPMEEMLDIDGFDEDLVNELRSRAKESLLNQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L ++ G+DS + + GI TMEDLA SVD+LL Sbjct: 422 QAEEKLDDAKPAEDLLTMEGMDSHLALVFASKGIITMEDLAEQSVDELLEIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ S+I+ AR W + + Sbjct: 474 ---------GITEERAASLILTARAP--WFAESE 496 >gi|300113656|ref|YP_003760231.1| transcription termination factor NusA [Nitrosococcus watsonii C-113] gi|299539593|gb|ADJ27910.1| transcription termination factor NusA [Nitrosococcus watsonii C-113] Length = 506 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 217/522 (41%), Positives = 329/522 (63%), Gaps = 23/522 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR Sbjct: 2 NKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRS 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EV+E E+E Q+ L A RD S ++GGVV +P+ + FGR+A Q+AKQVI+QKV Sbjct: 62 WEVIEDEAELEAPERQMCLSEACKRDSSAEVGGVVKEPMESIAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++ +V E++ G VKR++ GN+I+DLG N++G+I ++E I RE +RPGDR Sbjct: 122 REAERAKVAAAYQGRVKEMVMGVVKRMDRGNIILDLGDNAEGIIPQEEMIPREAVRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV Sbjct: 182 LRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA +V+ Sbjct: 242 KTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEAVSIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q Sbjct: 302 DEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQM 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ I + + +EL + +D + AL GI T E+LA +VD+L+ Sbjct: 422 IANEETIETVQLDQELLDMEEVDHGLASALASKGITTKENLAEQAVDELMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G +++ +I+ AR W E+ +DE + Sbjct: 475 ----------GMKREKAARLIMAARES--WFADEEQSDETEE 504 >gi|304386889|ref|ZP_07369151.1| transcription termination/antitermination protein NusA [Neisseria meningitidis ATCC 13091] gi|304339048|gb|EFM05140.1| transcription termination/antitermination protein NusA [Neisseria meningitidis ATCC 13091] Length = 503 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 212/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 187 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 246 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 307 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 367 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ + Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 480 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503 >gi|213580130|ref|ZP_03361956.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 464 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 191/481 (39%), Positives = 295/481 (61%), Gaps = 24/481 (4%) Query: 41 SLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDP 100 D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D Sbjct: 1 KNNEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQ 60 Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-- 158 + + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++ Sbjct: 61 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKS 120 Query: 159 ----GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF + Sbjct: 121 EGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRI 180 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+I Sbjct: 181 EVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI 240 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQL Sbjct: 241 DIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQL 300 Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 +GW ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E Sbjct: 301 SGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKE 360 Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 + I+G DE T ++ RA+ L + + + + +++L ++ G+D + L Sbjct: 361 LLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAAR 420 Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G+ T+EDLA +DDL G ++ +I+ AR + W Sbjct: 421 GVCTLEDLADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFGD 462 Query: 515 E 515 E Sbjct: 463 E 463 >gi|77165586|ref|YP_344111.1| transcription elongation factor NusA [Nitrosococcus oceani ATCC 19707] gi|76883900|gb|ABA58581.1| NusA antitermination factor [Nitrosococcus oceani ATCC 19707] Length = 506 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 214/522 (40%), Positives = 328/522 (62%), Gaps = 23/522 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR Sbjct: 2 NKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRS 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EV+E E++ Q+ L A RDP+ ++ G V +P+ + FGR+A Q+AKQVI+QKV Sbjct: 62 WEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + ++ ++ E++ G VKR++ GN+I+DLG N++G++ ++E I RE +RPGDR Sbjct: 122 REAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV Sbjct: 182 LRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+ Sbjct: 242 KTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q Sbjct: 302 DEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQM 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ I + + +EL + ID + AL GI T E+LA +VD+L+ Sbjct: 422 IANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G +++ +I+ AR W EK +E + Sbjct: 475 ----------GMNREKAARLIMAARES--WFVSEKQDEETEE 504 >gi|92115190|ref|YP_575118.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043] gi|91798280|gb|ABE60419.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043] Length = 497 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 311/515 (60%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + DA++ EK + R+V+ + ++ A+R + G RV+I+ TGD FR Sbjct: 2 SKEILLVVDAISNEKGVPREVIFEAVESALASASRKRFDGQEVSTRVKIDRATGDYDTFR 61 Query: 65 LLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ EN +I L A RDP + +G VV + + + FGR+A Q+AKQVI+QKV Sbjct: 62 RWTVVEDEAFENPDSEIPLSEAERRDPPLALGDVVEEQVESVAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER ++ ++ GE+++G VK+ +IVDLG N++ + R E I E R +R Sbjct: 122 REAERAEVVRQYAEREGELVAGIVKKTTREGLIVDLGENAEAFLPRSEMIPGERYRMNER 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ ++ V E RG Q++L+RT P +V+LF +EVPEI ++++K +RDPG+RAK+AV Sbjct: 182 VRALLWKVDAEARGSQLILTRTRPDMIVELFKIEVPEIAEQLIEIKGAARDPGARAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV ELR+E++DI++W + A VINA+ PA V +++ Sbjct: 242 KTNDKRIDPVGACVGMRGSRVQAVSNELRNERVDIIMWDDNPAQLVINAMAPAEVGSILV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V ++ L+ AIGR GQNVRLAS+LTGWT++++TEEE R+++ + ++ Sbjct: 302 DEDAHSMDVAVAEDNLAQAIGRSGQNVRLASELTGWTLNVMTEEEAEGKREQEIDSLIEY 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ + VDE +A LLV EGF +EELA V + E+ IE DE ++ RA++ L + Sbjct: 362 FINHLEVDEELARLLVEEGFTSLEELAYVPLEELLEIEELDEALIETLRARAKDELLTLA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ + ++L + G+D + L GI T EDLA S+ Sbjct: 422 IASEEALDGAQPDDDLLEMEGMDRHLAFTLASRGIVTREDLAEQSI-------------- 467 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 D +++ ++I+ AR W E E+ Sbjct: 468 ---DDLKDIDDVDEERAAALIMTARAP--WFESEQ 497 >gi|87119792|ref|ZP_01075689.1| transcription elongation factor NusA [Marinomonas sp. MED121] gi|86165268|gb|EAQ66536.1| transcription elongation factor NusA [Marinomonas sp. MED121] Length = 496 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 191/514 (37%), Positives = 321/514 (62%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD + +R Sbjct: 2 SKDILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEEAKIRVSIDQRTGDYTTYRQ 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 ++V E+ ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WDIVADEDYAQPAHELTIDDSVEQNLGLAIGEIFEEEVESEAFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + + +KVG+ + G VK+V ++IVDLG N++ V+ +D+ I+RE R DR+ Sbjct: 122 EAERAKVVARYSEKVGKPVHGQVKKVTRDSLIVDLGENAEAVLPKDQLIARETFRMNDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R + RG Q++LSR P FMV+LF +EVPEI +++++ +RDPG RAK+AV Sbjct: 182 RALLLEIRDDSRGAQLILSRNDPAFMVELFRLEVPEIAEEMIEIRGAARDPGLRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +V+D Sbjct: 242 TNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQLVINAMSPAEVDSIVID 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V + L+ AIGR GQNVRLAS LTGW ++++T E+ +Q++ ++ F Sbjct: 302 EDTHSMQVAVNADNLAQAIGRNGQNVRLASNLTGWQLNVMTSEDAVAKQQEESDKLINLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++++D+ +A L EGFA +EE+A V + E+ I+ FDE+ E++ RA+E L + + Sbjct: 362 VNSLDIDDDLAGQLADEGFATLEEIAYVPMEEMLDIDDFDEDLVNELRSRAKEALLNLAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ E +E+L ++ G+D+ + + L GI TMEDLA SVDDL+ E Sbjct: 422 QAEEQLEEATPAEDLLTMEGMDNHLALVLASKGICTMEDLAEQSVDDLIDIEE------- 474 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ S+I+ AR W + + Sbjct: 475 ----------INEERAASLIMTARAP--WFAESE 496 >gi|153207276|ref|ZP_01946040.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat Q177'] gi|154706434|ref|YP_001423972.1| transcription elongation factor NusA [Coxiella burnetii Dugway 5J108-111] gi|165918786|ref|ZP_02218872.1| transcription termination factor NusA [Coxiella burnetii RSA 334] gi|212212197|ref|YP_002303133.1| transcription elongation factor NusA [Coxiella burnetii CbuG_Q212] gi|212218228|ref|YP_002305015.1| transcription elongation factor NusA [Coxiella burnetii CbuK_Q154] gi|120576764|gb|EAX33388.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat Q177'] gi|154355720|gb|ABS77182.1| N utilization substance protein A [Coxiella burnetii Dugway 5J108-111] gi|165917510|gb|EDR36114.1| transcription termination factor NusA [Coxiella burnetii RSA 334] gi|212010607|gb|ACJ17988.1| N utilization substance protein A [Coxiella burnetii CbuG_Q212] gi|212012490|gb|ACJ19870.1| N utilization substance protein A [Coxiella burnetii CbuK_Q154] Length = 503 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 329/518 (63%), Gaps = 27/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61 Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+A Q AKQVI+Q Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAAQQAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 KVREAER + +++ +VGE++ G VKRV ++I+D+G N++ ++ R+E I RE R Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181 Query: 180 DRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+Y V + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ + Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKI 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + ++I+ AR W +E+ Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEE 499 >gi|254361245|ref|ZP_04977388.1| N utilization substance A [Mannheimia haemolytica PHL213] gi|261492531|ref|ZP_05989084.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496806|ref|ZP_05993180.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092741|gb|EDN73784.1| N utilization substance A [Mannheimia haemolytica PHL213] gi|261307553|gb|EEY08882.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311690|gb|EEY12840.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 498 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 188/515 (36%), Positives = 308/515 (59%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TGD FR Sbjct: 2 SKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDIDVRVVVDRKTGDFQTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N T +ISL+ A+ DP++ +G + D + ++FGRVA+Q+ QV+ K+REA Sbjct: 62 WAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEFGRVAIQTFGQVVKTKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPG 179 E+ + EF+ +G+II TVK+V N+ ++L + VI R++ I REN RPG Sbjct: 122 EKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSEDIKGEAVIVREDMIPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ +Y+++ E +GPQ+ ++R P + +LF +EVPEI G++++K +RD GSRAK+ Sbjct: 182 DRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEGVIEIKGSARDVGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ + Sbjct: 242 AVKTHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDENPAQFVINAMAPADVSSI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V++++ +++ V + L+ AIGR GQNVRLA+QLTGW ++++T EE + +++ + Sbjct: 302 VINDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWALNVMTVEELTKKSEEEDGKVI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLE 418 A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ + Sbjct: 362 NLLTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDTLTAIDGLEDEDLVEELQSRAKNAIT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +K ++ + E+L ++ G+D I L E I T+E+LA VDDL E Sbjct: 422 KKALEEEKLLKSAQIEEKLLTLEGMDRHIAFKLAEKQITTLEELAEQGVDDLADIEE--- 478 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +++ +I+ AR ++ W Sbjct: 479 --------------LSEEKAGELIMAAR-QICWFN 498 >gi|218768664|ref|YP_002343176.1| transcription elongation factor NusA [Neisseria meningitidis Z2491] gi|121052672|emb|CAM09013.1| N utilisation substance protein A [Neisseria meningitidis Z2491] Length = 505 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|261856064|ref|YP_003263347.1| NusA antitermination factor [Halothiobacillus neapolitanus c2] gi|261836533|gb|ACX96300.1| NusA antitermination factor [Halothiobacillus neapolitanus c2] Length = 491 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 219/510 (42%), Positives = 321/510 (62%), Gaps = 24/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAV+ EK +DR+V+ + ++ +AAR +G D RV+I+ ETGD FR Sbjct: 2 SKEILFVADAVSNEKGVDREVIFEAIEAALAQAARKRHGGDIDTRVQIDHETGDYRTFRR 61 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE E ++ L+ A+ DP I +G V + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WQVVEGDSSEFPEREMILEAAQMDDPDIKVGEFVEEEIESVEFGRIAAQAAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + + D+ G +I G +KR++ GNVI+DLG N + +I RDE I RE +RPGDR+ Sbjct: 122 EAERRQIVDAYIDRKGSLIMGLIKRIDRGNVILDLGGNVEALIPRDEMIGREAVRPGDRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ DVR E RGPQ+ +SRT PQF+++LF +EVPEI G++++K +RDPG RAK+AV Sbjct: 182 RGYLADVRHEPRGPQLFVSRTAPQFLIELFKLEVPEIEQGLIEIKGAARDPGLRAKIAVE 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S DS IDPVG CVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V+D Sbjct: 242 SRDSRIDPVGTCVGMRGSRVQSVTNELNGERVDIIIWDSNPAQFVINAMSPAEVVSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V +E+LS AIGR GQNVRLASQLTGW ++++ EEE + + T+ F Sbjct: 302 EDRHSMDVAVTEEKLSQAIGRGGQNVRLASQLTGWHLNVMGEEEAVAKVETETRRATEAF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE +A +LV GF+ +EE+A V +E+ +EGFDE E++ RAR+ L I Sbjct: 362 MRDLDVDEDVAAVLVEAGFSSLEEIAYVPTAELLDVEGFDEGIVEELRNRARDALLVQAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + E ++ + G+ ++ L G+ T +DLA SVD++ + Sbjct: 422 SDDA--GESTEELDIAQLEGMTPELLTILNAAGVHTSDDLAELSVDEMTAFD-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + + +I+ AR W Sbjct: 472 ---------GVDEALAQQLIMAARAP--WF 490 >gi|319787428|ref|YP_004146903.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317465940|gb|ADV27672.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 503 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 203/481 (42%), Positives = 320/481 (66%), Gaps = 5/481 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR Sbjct: 2 SKELLLVVDAVANEKGVPREVIFEALEAALASAAKKRYVDQDVVTRVAIDRKDGSYETFR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ QI L A D +++G + + + +FGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQIRLMDAVDEADGVEVGDYIEEQIENPEFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+++G VKRVE GN+ VDLG N++ I +D+ I R+ LR GD Sbjct: 122 VREAERQQVVDAWKDRVGELVTGVVKRVERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+Y+VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLYEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q Sbjct: 302 VDEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVAAKSEAEQAVARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE IA +LV+EGF+ VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDKLEVDEEIAGILVSEGFSTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLND 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +++++ E G +E+L ++ G+D AL +G++T EDL+ + D+++ + Sbjct: 422 ALAVEEQMGEEGPAEDLLALEGMDEDTAFALAAHGVRTSEDLSDLAADEVVEFGIEGLDE 481 Query: 481 I 481 Sbjct: 482 T 482 >gi|121635282|ref|YP_975527.1| transcription elongation factor NusA [Neisseria meningitidis FAM18] gi|120866988|emb|CAM10751.1| N utilisation substance protein A [Neisseria meningitidis FAM18] Length = 505 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|325205639|gb|ADZ01092.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M04-240196] Length = 500 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 210/518 (40%), Positives = 326/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|15677491|ref|NP_274647.1| transcription elongation factor NusA [Neisseria meningitidis MC58] gi|7226892|gb|AAF41991.1| N utilization substance protein A [Neisseria meningitidis MC58] gi|319410895|emb|CBY91289.1| transcription elongation protein nusA (N utilization substance protein A; L factor) [Neisseria meningitidis WUE 2594] gi|325140713|gb|EGC63227.1| transcription termination/antitermination protein nusA [Neisseria meningitidis CU385] gi|325144892|gb|EGC67179.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240013] gi|325199764|gb|ADY95219.1| transcription termination/antitermination protein nusA [Neisseria meningitidis H44/76] Length = 500 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325128688|gb|EGC51554.1| transcription termination/antitermination protein nusA [Neisseria meningitidis N1568] Length = 500 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRCGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|29654724|ref|NP_820416.1| transcription elongation factor NusA [Coxiella burnetii RSA 493] gi|81628742|sp|Q83BS0|NUSA_COXBU RecName: Full=Transcription elongation protein nusA gi|29541992|gb|AAO90930.1| N utilization substance protein A [Coxiella burnetii RSA 493] Length = 503 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 210/518 (40%), Positives = 330/518 (63%), Gaps = 27/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61 Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+Q Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 KVREAER + +++ +VGE++ G VKRV ++I+D+G N++ ++ R+E I RE R Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181 Query: 180 DRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+Y V + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ + Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKI 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + ++I+ AR W +E+ Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEE 499 >gi|254805397|ref|YP_003083618.1| N utilization substance protein A [Neisseria meningitidis alpha14] gi|254668939|emb|CBA07185.1| N utilization substance protein A [Neisseria meningitidis alpha14] Length = 500 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNESFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325132774|gb|EGC55456.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M6190] Length = 500 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|261392135|emb|CAX49635.1| transcription elongation protein nusA (N utilization substance protein A; L factor) [Neisseria meningitidis 8013] gi|325134692|gb|EGC57331.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M13399] Length = 500 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|161830897|ref|YP_001597277.1| transcription elongation factor NusA [Coxiella burnetii RSA 331] gi|161762764|gb|ABX78406.1| transcription termination factor NusA [Coxiella burnetii RSA 331] Length = 503 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 210/518 (40%), Positives = 331/518 (63%), Gaps = 27/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61 Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+Q Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 KVREAER + +++ +VGE++ G VKRV ++I+D+G N++ ++ R+E I RE R Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181 Query: 180 DRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+Y V + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ ++ Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEADKI 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + ++I+ AR W +E+ Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEE 499 >gi|325204603|gb|ADZ00057.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240355] Length = 500 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 212/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|254468012|ref|ZP_05081418.1| transcription termination factor NusA [beta proteobacterium KB13] gi|207086822|gb|EDZ64105.1| transcription termination factor NusA [beta proteobacterium KB13] Length = 485 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 202/506 (39%), Positives = 329/506 (65%), Gaps = 21/506 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + DA+A+EK++ +++V + + ++ A + Y +DIRV+I+PE+G FR V Sbjct: 1 MLILVDALAHEKNVSKEIVFNALELALASATKKKYPHGTDIRVKIDPESGAYESFRCWTV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEE + + + DR IG V+ + +P +FGR+ Q+AKQVI+QKVREAER+ Sbjct: 61 VEEENLENEEAEILLIDDRAKDKQIGDVIEESIPSEEFGRIGAQAAKQVILQKVREAERE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + +++ G ++R+E GN I+++G + ++ RD+ I +ENLR GDR+++ + Sbjct: 121 QVLNEFLARDEKLVMGQIRRMERGNAIIEIGKLEAILPRDQMIPKENLRVGDRIRAALLK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + RGPQ++LSRT P+F++KLF +EVPEI G++++ + SRDPGSR+K+AV ++D + Sbjct: 181 IETSMRGPQLILSRTSPEFIIKLFEIEVPEIEEGLLEIMSASRDPGSRSKIAVKANDQRL 240 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG CVGMRGSRVQAV TEL E++DIV+WS + A FVIN++ PA V+ +V+DE+ + Sbjct: 241 DPVGTCVGMRGSRVQAVTTELSGERVDIVLWSIEPAQFVINSMAPAEVSSIVVDEEKRSM 300 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 +++V ++QL+LAIGR GQN+RLASQLTGW ++I+TEEE +++++ +Q F++ ++V Sbjct: 301 DIVVDEDQLALAIGRNGQNIRLASQLTGWELNIMTEEESEKKHEEEYSTVSQLFIEKLDV 360 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE +A +LV EGF +EE+A V E+ ++ FDE+T E++ RA+ + I ++K+ Sbjct: 361 DEEVADILVKEGFTSLEEIAYVPTEELNQMDIFDEDTIEELRSRAKAAILTAAIANEEKV 420 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488 E E+L ++ G+D L GI +MEDLA +VD+L L Sbjct: 421 PEAQ--EDLLTMEGMDQNTANLLASKGIVSMEDLAELAVDEL-----------------L 461 Query: 489 SSLGTPKDQVESMIIHARYKMGWIEK 514 + +++ + +I+ AR W + Sbjct: 462 DIIKIDEEKAKELIMTARAP--WFTE 485 >gi|325142812|gb|EGC65183.1| transcription termination/antitermination protein nusA [Neisseria meningitidis 961-5945] gi|325201699|gb|ADY97153.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240149] gi|325208565|gb|ADZ04017.1| transcription termination/antitermination protein nusA [Neisseria meningitidis NZ-05/33] Length = 500 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325130689|gb|EGC53429.1| transcription termination/antitermination protein nusA [Neisseria meningitidis OX99.30304] Length = 500 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALAGEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325136708|gb|EGC59308.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M0579] Length = 500 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 212/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|157825875|ref|YP_001493595.1| transcription elongation factor NusA [Rickettsia akari str. Hartford] gi|157799833|gb|ABV75087.1| transcription elongation factor NusA [Rickettsia akari str. Hartford] Length = 503 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 358/511 (70%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILVSTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+V++Y QISL A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVQDYLTQISLAEALRKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I+ EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLINGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGSRAK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKIEVPEILEDIIQIKSVARDPGSRAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFVT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 TQ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STQLFMEALDVEEVIGQLLSVTGFNSVEQIASSEVSTLTRIEGFEEELAVEIKNRAVNYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILALPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARRH 497 >gi|330981089|gb|EGH79192.1| transcription elongation factor NusA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 453 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 191/452 (42%), Positives = 304/452 (67%), Gaps = 3/452 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 2 SKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRR 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 EAER + +++++GEIISGTVK+V NVIVDLGN ++ ++ R++ ISRE R G RV Sbjct: 122 EAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV Sbjct: 182 RALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++D Sbjct: 242 SKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F Sbjct: 302 EDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 362 IEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 ++K+ + +E+L S+ G+D + + L Sbjct: 422 ATEEKLADAHPAEDLLSLEGMDKDLAMELAVR 453 >gi|325921396|ref|ZP_08183253.1| transcription termination factor NusA [Xanthomonas gardneri ATCC 19865] gi|325548154|gb|EGD19151.1| transcription termination factor NusA [Xanthomonas gardneri ATCC 19865] Length = 503 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 315/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGNYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQTSARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE IA +LV EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDRLEVDEEIAAILVTEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNA 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 422 ALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|160871616|ref|ZP_02061748.1| NusA antitermination factor [Rickettsiella grylli] gi|159120415|gb|EDP45753.1| NusA antitermination factor [Rickettsiella grylli] Length = 512 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 209/529 (39%), Positives = 316/529 (59%), Gaps = 37/529 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L +A+ V+ EK +D++++ + ++ A + G D+R+ I+ TGD FR Sbjct: 2 KKEILLVAETVSNEKDVDKELIFKAIEAALAMATKKKAGEDIDVRIAIDRRTGDYETFRT 61 Query: 66 LEVVEEV------------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 VV + + I L A+ R P+ IG ++ + +P ++FGR+A Q+ Sbjct: 62 WTVVADEAEFNHSDEIPVSFDPLKHIQLSEAKKRHPNSQIGDIIEERMPSVEFGRIAAQT 121 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS 172 AKQVIIQKVREAER + + ++VGE++SG VKRV +IVDLG + + + R+E I Sbjct: 122 AKQVIIQKVREAERAKIAEAYTNRVGELLSGIVKRVTREGLIVDLGASVEAFVPREEMIP 181 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE +R DR++ Y+Y V + RGPQ+L+SRT P+ +++LF +EVPEI ++++K+ +RD Sbjct: 182 REEIRSEDRLRGYLYAVNPQVRGPQLLMSRTRPEMLIELFKIEVPEIGEELIEIKSAARD 241 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 PGSRAK+AV ++D IDP+GACVGMRG+RVQAV +EL E+IDIV+W + VINA+ Sbjct: 242 PGSRAKIAVKTNDGRIDPIGACVGMRGARVQAVSSELAGERIDIVLWDDNPVQLVINAMA 301 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V +V+DED ++V V ++QLS AIGR GQNVRLAS+LTGW I++IT EE + Sbjct: 302 PAEVASIVVDEDTKVMDVAVQEDQLSQAIGRNGQNVRLASELTGWIINVITVEEAAKKIV 361 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 K+ F++ + +DE +A +LV EGF +EE+A V E+ +IEGFD +Q R Sbjct: 362 KESENLQNLFIEQLTIDEALAEMLVREGFTSLEEIAYVSAQELLAIEGFDSILVEMLQTR 421 Query: 413 AREYLEGIDITLQ-----KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 A+E L T Q + + L +L S+ G+ +I L + G+ + E LA +V Sbjct: 422 AKEVLALQAPTKQKSSTTEHEKFLEPHRDLLSLEGMTEEIATTLAKRGVSSREALAELAV 481 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 DDLL E +++ +I+ AR W +EK Sbjct: 482 DDLLDIIE-----------------LDREKAGKLIMSARAP--WFVEEK 511 >gi|316984984|gb|EFV63938.1| transcription elongation protein nusA [Neisseria meningitidis H44/76] Length = 496 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 210/517 (40%), Positives = 324/517 (62%), Gaps = 30/517 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GDR Sbjct: 121 DAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDR 180 Query: 182 VKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+ Sbjct: 181 IRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 474 ------------GVNEETAKAVILTAREH--WFTEDK 496 >gi|293398726|ref|ZP_06642902.1| N utilization substance protein A [Neisseria gonorrhoeae F62] gi|59718534|gb|AAW89939.1| putative N utilisation substance protein A [Neisseria gonorrhoeae FA 1090] gi|291610866|gb|EFF39965.1| N utilization substance protein A [Neisseria gonorrhoeae F62] Length = 505 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|285017807|ref|YP_003375518.1| transcription elongation protein nusa [Xanthomonas albilineans GPE PC73] gi|283473025|emb|CBA15530.1| probable transcription elongation protein nusa [Xanthomonas albilineans] Length = 503 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 320/508 (62%), Gaps = 22/508 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + DAVA EK + R+V+ + ++ AA+ Y D+ RV I+ + G F Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRY-PDQDVLTRVTIDHKEGSYETF 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 +VREAER + +KD+VGE+++G VKR E GN+ VDLG N++ I +D+ I R+ LR G Sbjct: 121 RVREAERQQVVDAWKDRVGELVTGVVKRAERGNIYVDLGGNAEAFIPKDKGIPRDVLRAG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVLAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Sbjct: 301 IVDEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQAVAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q FM + VDE IA +LVAEGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 QLFMDKLEVDEEIAAILVAEGFNSVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + +L S+PG+D AL +G++T EDL+ + D++L + Sbjct: 421 EALAAEESDDGGVPAADLLSLPGMDEATAYALAGHGVRTSEDLSDLAADEILEFGIE--- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARY 507 ++ +I+ AR Sbjct: 478 ------------DMDHERAAVLILAARA 493 >gi|254521780|ref|ZP_05133835.1| N utilization substance protein A [Stenotrophomonas sp. SKA14] gi|219719371|gb|EED37896.1| N utilization substance protein A [Stenotrophomonas sp. SKA14] Length = 503 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 316/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++G I +D+ I R+ LR GD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VLAHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNE 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + +++ + + +++L S+ G+D AL +G++T EDL+ + D+++ + Sbjct: 422 ALAVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDF 474 >gi|161572974|ref|YP_208351.2| transcription elongation factor NusA [Neisseria gonorrhoeae FA 1090] gi|240014533|ref|ZP_04721446.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI18] gi|240121055|ref|ZP_04734017.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID24-1] Length = 500 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325198741|gb|ADY94197.1| transcription termination/antitermination protein nusA [Neisseria meningitidis G2136] Length = 500 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNIGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|110833189|ref|YP_692048.1| transcription elongation factor [Alcanivorax borkumensis SK2] gi|110646300|emb|CAL15776.1| transcription elongation factor [Alcanivorax borkumensis SK2] Length = 525 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 205/518 (39%), Positives = 325/518 (62%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ E+G+ FR Sbjct: 25 NKEILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRESGNARSFR 84 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + VV EE+ + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+QKV Sbjct: 85 VWHVVPDEELFEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQKV 144 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + E++D++G+++SGTVK+ ++++DLG N++ +I R+ I RE +R DR Sbjct: 145 REAERRQIVEEYRDRIGDLVSGTVKKASRDSIVLDLGGNAEALITREHMIPREAVRQNDR 204 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ V E RGPQ+ SR P +V+LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 205 VRAYLLGVNEENRGPQLFASRACPDMLVELFKIEVPEIGEELIEIKGAARDPGSRAKIAV 264 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +V+ Sbjct: 265 KTNDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASIVM 324 Query: 302 DEDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Q Sbjct: 325 DEESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAESKQEQEAEQALQ 384 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ + VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L Sbjct: 385 TFINELEVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALLTK 444 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++K + +E+L ++ G+D ++ V L I TMEDLA +VDDLL Sbjct: 445 ALVSEEKFDQAEPAEDLLNMEGMDRELAVELASRDIVTMEDLAEQAVDDLLEIE------ 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G +++ +I+ AR W E E A Sbjct: 499 -----------GLSEERAAELIMTARAP--WFEGEDEA 523 >gi|21243417|ref|NP_642999.1| transcription elongation factor NusA [Xanthomonas axonopodis pv. citri str. 306] gi|21108968|gb|AAM37535.1| N utilization substance protein A [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 201/473 (42%), Positives = 315/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFVSRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNA 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 422 ALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|325915554|ref|ZP_08177865.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC 35937] gi|325538270|gb|EGD09955.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC 35937] Length = 503 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 203/474 (42%), Positives = 318/474 (67%), Gaps = 7/474 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + DAVA EK + R+V+ + ++ AA+ Y D+ RV I+ + G+ F Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRY-PDQDVLTRVTIDHKDGNYETF 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 +VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPG Sbjct: 121 RVREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVIAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Sbjct: 301 IVDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 QLFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 421 AALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|21231945|ref|NP_637862.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991044|ref|YP_001903054.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. B100] gi|21113674|gb|AAM41786.1| N utilization substance protein A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732804|emb|CAP50998.1| N utilization substance (transcription elongation) protein A [Xanthomonas campestris pv. campestris] Length = 503 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 204/474 (43%), Positives = 318/474 (67%), Gaps = 7/474 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + DAVA EK + R+V+ + ++ AA+ Y D+ RV I+ + G+ F Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRY-PDQDVLTRVTIDHKDGNYETF 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 +VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPG Sbjct: 121 RVREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVIAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Sbjct: 301 IVDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 QLFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 421 AALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|309378387|emb|CBX22988.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 496 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 208/517 (40%), Positives = 323/517 (62%), Gaps = 30/517 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDIEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GDR Sbjct: 121 DAEREQNLNEFLATREDIVTGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGDR 180 Query: 182 VKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG RAK+ Sbjct: 181 IRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRAVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP A FV++AL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPKPAQFVMSALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ + Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 474 ------------GIDEETAKAVILTAREH--WFTEDK 496 >gi|161870486|ref|YP_001599658.1| transcription elongation factor NusA [Neisseria meningitidis 053442] gi|161596039|gb|ABX73699.1| N utilisation substance protein A [Neisseria meningitidis 053442] Length = 496 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 210/517 (40%), Positives = 325/517 (62%), Gaps = 30/517 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGIAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GDR Sbjct: 121 DAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDR 180 Query: 182 VKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+ Sbjct: 181 IRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 474 ------------GVNEETAKAVILTAREH--WFTEDK 496 >gi|261400895|ref|ZP_05987020.1| transcription termination/antitermination protein NusA [Neisseria lactamica ATCC 23970] gi|269209254|gb|EEZ75709.1| transcription termination/antitermination protein NusA [Neisseria lactamica ATCC 23970] Length = 500 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD Sbjct: 124 RDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG RAK Sbjct: 184 RIRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GIDEETAKAVILTAREH--WFTEDK 500 >gi|190575263|ref|YP_001973108.1| transcription elongation factor NusA [Stenotrophomonas maltophilia K279a] gi|190013185|emb|CAQ46818.1| putative N utilization substance protein A [Stenotrophomonas maltophilia K279a] Length = 503 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 204/473 (43%), Positives = 316/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G FR Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++G I +D+ I R+ LR GD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VLAQDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNE 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + +++ + + +++L S+ G+D AL +G++T EDL+ + D+++ + Sbjct: 422 ALAVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDF 474 >gi|268597521|ref|ZP_06131688.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|268601718|ref|ZP_06135885.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|268604051|ref|ZP_06138218.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|268682510|ref|ZP_06149372.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|268686952|ref|ZP_06153814.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] gi|268551309|gb|EEZ46328.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|268585849|gb|EEZ50525.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|268588182|gb|EEZ52858.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|268622794|gb|EEZ55194.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|268627236|gb|EEZ59636.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] Length = 503 Score = 546 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 187 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 246 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 307 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 367 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 480 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503 >gi|289665188|ref|ZP_06486769.1| transcription elongation factor NusA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667364|ref|ZP_06488439.1| transcription elongation factor NusA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 202/473 (42%), Positives = 315/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNA 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 422 ALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|194099046|ref|YP_002002127.1| transcription elongation factor NusA [Neisseria gonorrhoeae NCCP11945] gi|254494079|ref|ZP_05107250.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291] gi|268595172|ref|ZP_06129339.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|268599676|ref|ZP_06133843.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|268684674|ref|ZP_06151536.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] gi|193934336|gb|ACF30160.1| transcription elongation factor NusA [Neisseria gonorrhoeae NCCP11945] gi|226513119|gb|EEH62464.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291] gi|268548561|gb|EEZ43979.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|268583807|gb|EEZ48483.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|268624958|gb|EEZ57358.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] gi|317164606|gb|ADV08147.1| transcription elongation factor NusA [Neisseria gonorrhoeae TCDC-NG08107] Length = 503 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 187 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 246 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 307 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 367 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 480 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503 >gi|78048394|ref|YP_364569.1| transcription elongation factor NusA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294666762|ref|ZP_06731996.1| transcription elongation factor NusA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924690|ref|ZP_08186128.1| transcription termination factor NusA [Xanthomonas perforans 91-118] gi|78036824|emb|CAJ24517.1| N utilization substance (transcription elongation) protein A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292603423|gb|EFF46840.1| transcription elongation factor NusA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544896|gb|EGD16241.1| transcription termination factor NusA [Xanthomonas perforans 91-118] Length = 503 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 201/473 (42%), Positives = 315/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNA 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 422 ALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|313667982|ref|YP_004048266.1| N utilisation substance protein A [Neisseria lactamica ST-640] gi|313005444|emb|CBN86879.1| N utilisation substance protein A [Neisseria lactamica 020-06] Length = 500 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD Sbjct: 124 RDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG RAK Sbjct: 184 RIRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VSE++ ++ G+D+ + L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSEDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GIDEETAKAVILTAREH--WFTEDK 500 >gi|291043424|ref|ZP_06569145.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] gi|291012660|gb|EFE04645.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] Length = 505 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|240016979|ref|ZP_04723519.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA6140] gi|240081421|ref|ZP_04725964.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|240116051|ref|ZP_04730113.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|240118338|ref|ZP_04732400.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|240123886|ref|ZP_04736842.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|240128559|ref|ZP_04741220.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] gi|260440135|ref|ZP_05793951.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] Length = 500 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|166712599|ref|ZP_02243806.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 202/473 (42%), Positives = 316/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQA+ EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDARTDPIGACIGMRGSRVQAISNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNA 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 422 ALAEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 474 >gi|194366589|ref|YP_002029199.1| transcription elongation factor NusA [Stenotrophomonas maltophilia R551-3] gi|194349393|gb|ACF52516.1| NusA antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 503 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 316/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y + RV I+ + G FR Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++G I +D+ I R+ LR GD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VLAHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNE 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + +++ + + +++L S+ G+D AL +G++T E+L+ + D+++ + Sbjct: 422 ALAVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEELSDLAADEVMDF 474 >gi|66767928|ref|YP_242690.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. 8004] gi|66573260|gb|AAY48670.1| N utilization substance protein A [Xanthomonas campestris pv. campestris str. 8004] Length = 503 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 204/474 (43%), Positives = 318/474 (67%), Gaps = 7/474 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLF 63 ELL + DAVA EK + R+V+ + ++ AA+ Y D+ RV I+ + G+ F Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRY-PDQDVLTRVTIDHKDGNYETF 60 Query: 64 RLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q Sbjct: 61 RRWEVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 +VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPG Sbjct: 121 RVREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+ Sbjct: 181 DRVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V + Sbjct: 241 AVIAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Sbjct: 301 IVDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASAR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 361 QLFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALVN 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 421 AALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|304414228|ref|ZP_07395596.1| transcription termination/antitermination L factor [Candidatus Regiella insecticola LSR1] gi|304283442|gb|EFL91838.1| transcription termination/antitermination L factor [Candidatus Regiella insecticola LSR1] Length = 506 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 187/521 (35%), Positives = 307/521 (58%), Gaps = 30/521 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + + ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKHEQEIEVRVNIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPS-----------IDIGGVVSDPLPPMDFGRVAVQSA 114 +VV EV T +I+L+ A++ +I + D + + F R+ Q+A Sbjct: 62 WKVVSEVVMPTREITLEAAQEISKEEAQQNTPISTESEIPTYIEDQIKSVVFDRITTQTA 121 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 KQVI+QKVREAER +F+++ G+I++ TVK+V ++I+DLGN ++G+I +++ + R Sbjct: 122 KQVIVQKVREAERAVVIEQFREQEGKIVTATVKKVSRESIILDLGNNAEGIIGQEDMLPR 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 EN+RPGDR++ +Y++R E RGPQ+ +SR+ P+ +++LF +EVPEI ++++KA RDP Sbjct: 182 ENIRPGDRIRGILYEIRPEARGPQLFISRSRPEMLIELFRIEVPEIDEELIEIKAAIRDP 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 SRAK+AV ++D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FV+NA+ P Sbjct: 242 ASRAKIAVKTNDKRIDPIGACVGMRGARVQAVSNELGGERIDIVLWDDNPAQFVLNAMAP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 A V +V+DED + + V + + AIGR GQNVRL SQL+GW ++++T E Q Sbjct: 302 AEVASIVVDEDAKTMNIAVEEGNSAQAIGRNGQNVRLVSQLSGWELNVMTINELKEKCQA 361 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + F++ + +DE A +LV F+ +EELA V SE+ I+ FD++ E++ RA Sbjct: 362 ETRTAIDMFIEHLEIDEECATVLVEAEFSSLEELAYVPESELPEIDSFDKKRLQELRDRA 421 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + L + + ++ + +++L ++ +D + L G+ T+EDLA V DL Sbjct: 422 QNVLTTLALKKEESFGDNKPADDLLNLASLDRDMAFKLAACGVCTLEDLAEQGVSDLADI 481 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 E ++ +I+ AR + W Sbjct: 482 EE-----------------LDDEKAGKLIMAAR-NICWFGD 504 >gi|239999349|ref|ZP_04719273.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|240113616|ref|ZP_04728106.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|240126085|ref|ZP_04738971.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] Length = 500 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|297180949|gb|ADI17152.1| transcription elongation factor [uncultured gamma proteobacterium HF0070_08D07] Length = 506 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 205/521 (39%), Positives = 310/521 (59%), Gaps = 30/521 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + D+V+ EK + ++ + + ++ A R YG D RV I+ G FR Sbjct: 2 SKEILMVVDSVSNEKGVPKETLFEAVELALAVATRKRYGETFDFRVAIDRNDGSYETFRR 61 Query: 66 LEVVEEV-----------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 VV+E N ++L A+ +D G V + + + FGR+A Q+A Sbjct: 62 WTVVDEENMVDEEGEEKEFNPDAHLNLSQAQIKDSESSFGSVFEEQVESVGFGRIAAQTA 121 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 KQVI+QKVREAERD+ + K+ I+SGTVK++ +VIVDLGN ++G++ R+ I R Sbjct: 122 KQVIVQKVREAERDQIAAAYDGKINSIVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPR 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E R GDR+++ + +++ + RGPQ++LSRT Q +V+LF +EVPEI ++Q+ +RDP Sbjct: 182 EIFRVGDRLRAMLVEIKSDNRGPQLMLSRTSRQMLVELFKIEVPEISEDVIQILGAARDP 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSRAK+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ P Sbjct: 242 GSRAKIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 A V +VLDE+ ++V V +E L+ AIGR GQNVRLAS L+GW+++I+TE+E + + Sbjct: 302 AEVASIVLDEESHSMDVAVTEENLAQAIGRGGQNVRLASDLSGWSLNIMTEQEAAQKQDD 361 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + F++ ++VDE +A LV EGF +EE+A V I E++SIEGFDEE E++ RA Sbjct: 362 EAKSFIDDFIKYLSVDEDVAGALVEEGFTTLEEVAYVPIEELSSIEGFDEEIVSELRDRA 421 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ L I ++ G +E+L + G+ ++ L N + +MEDLA SV +L+ Sbjct: 422 KDSLLTKAIADEEANNLAGPNEDLLQMEGMTVELAKILSRNSVSSMEDLAELSVSELIEI 481 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + + + +I+ AR W E+ Sbjct: 482 EPS----------------IDESEGARLIMKAREP--WFEE 504 >gi|238650318|ref|YP_002916170.1| transcription elongation factor NusA [Rickettsia peacockii str. Rustic] gi|238624416|gb|ACR47122.1| transcription elongation factor NusA [Rickettsia peacockii str. Rustic] Length = 503 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQTAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|152995057|ref|YP_001339892.1| NusA antitermination factor [Marinomonas sp. MWYL1] gi|150835981|gb|ABR69957.1| NusA antitermination factor [Marinomonas sp. MWYL1] Length = 496 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 183/514 (35%), Positives = 318/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD +R Sbjct: 2 SKEILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEDALIRVSIDQRTGDYKTYRQ 61 Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V + + ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WHIVADEDYSAPAFELTIDDSEEQNLGVPIGEIYEEEVESEVFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + + +KVG+++ G VK+V ++I+DLG N++ + +D+ I+RE+ R DR+ Sbjct: 122 EAERAKMVALYTEKVGKLVHGQVKKVTRDSLIIDLGENAEASLPKDQLIARESFRMNDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++R + RG Q++LSR P FM++LF +EVPEI +++++ +RDPG RAK+AV Sbjct: 182 RALLLEIRDDSRGAQLILSRNAPAFMIELFRLEVPEISEEVIEIRGAARDPGLRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+D Sbjct: 242 TNDRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVID 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V + L+ AIGR GQNVRLAS LTGW+++++T E+ +Q++ + F Sbjct: 302 EDAHSMDVAVKSDNLAQAIGRNGQNVRLASTLTGWSLNVMTSEDAEAKQQEESQKLIDIF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++D+ +A +V EGF +EE+A + + E+ I+GFDE+ E++ RA+E L + Sbjct: 362 VNGLDIDDDLAIQMVDEGFTSLEEVAYIPMEEMLDIDGFDEDLVNELRSRAKEALLNQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ + + +L ++ G+D+ + + L G+ TMEDLA SVD+L Sbjct: 422 QAEEQLDDAKPAADLLAMEGMDNHLALVLASMGVITMEDLAEQSVDEL------------ 469 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 LS G +++ +I+ AR W + + Sbjct: 470 -----LSVEGMTEERAGRLILTARAP--WFTESE 496 >gi|261364309|ref|ZP_05977192.1| transcription termination/antitermination protein NusA [Neisseria mucosa ATCC 25996] gi|288567563|gb|EFC89123.1| transcription termination/antitermination protein NusA [Neisseria mucosa ATCC 25996] Length = 500 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 205/517 (39%), Positives = 319/517 (61%), Gaps = 30/517 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RDLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ + Sbjct: 424 TMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ + +I+ AR W +E Sbjct: 478 -------------GVDEEAAKKVILAAREH--WFTEE 499 >gi|157827030|ref|YP_001496094.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389] gi|157802334|gb|ABV79057.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389] Length = 500 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 233/500 (46%), Positives = 348/500 (69%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++ Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+ Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+ Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K++ ELGV +EL I I ++ + E GIKT+EDL SV++ + N Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNEFKNLAPNSNIT 480 Query: 481 IEKFDGFLSSLGTPKDQVES 500 E + + + E Sbjct: 481 DENIKLLIKTAKQHSELKEE 500 >gi|91205427|ref|YP_537782.1| transcription elongation factor NusA [Rickettsia bellii RML369-C] gi|91068971|gb|ABE04693.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia bellii RML369-C] Length = 500 Score = 543 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 233/500 (46%), Positives = 348/500 (69%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAVRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++ Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+ Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+ Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K++ ELGV +EL I I ++ + E GIKT+EDL SV++ + N Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNEFKNLASNSNIT 480 Query: 481 IEKFDGFLSSLGTPKDQVES 500 E + + + E Sbjct: 481 DENIKLLIKTAKQHSELKEE 500 >gi|308389761|gb|ADO32081.1| N utilization substance protein A [Neisseria meningitidis alpha710] Length = 500 Score = 543 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 321/508 (63%), Gaps = 28/508 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHAR 506 G ++ +++I+ AR Sbjct: 478 -------------GVNEEPAKAVILTAR 492 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +I ++ E + +D + L G ++LA + + E+ I G +EE A Sbjct: 425 MAIAAEEKLGEVSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEITGVNEEPA 484 Query: 407 VEIQGRARE 415 + AR+ Sbjct: 485 KAVILTARD 493 >gi|319944110|ref|ZP_08018388.1| N utilization substance A [Lautropia mirabilis ATCC 51599] gi|319742604|gb|EFV95013.1| N utilization substance A [Lautropia mirabilis ATCC 51599] Length = 496 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 207/510 (40%), Positives = 330/510 (64%), Gaps = 23/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + DA+A EK++ RDVV + + ++ A + Y DIRV I+ E G FR + Sbjct: 5 ELLLMVDALAREKNVPRDVVFAALESALASAMKKRYKDEVDIRVAISREDGSYRGFRRWQ 64 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E++++ QI L AR +DP I + + + L ++FGR+ Q+AKQVI+QK+R+A Sbjct: 65 VVPDGELDDHDLQIILSEARKQDPDIQLEEFIEEELEEIEFGRIGAQAAKQVILQKIRDA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++SGT+KRV+ I++ G + + RD+ I +ENLR GDRV+++ Sbjct: 125 EREQIINDFLSRGDSLLSGTIKRVDREGAIIESGRIEARLPRDQMIPKENLRNGDRVRAW 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + RE RGPQ+ LSRT P+F++KLF +EVPEI G++Q++A +RDPG RAK+AV ++D Sbjct: 185 VSRINREGRGPQLFLSRTAPEFIMKLFELEVPEIEQGLLQIRAAARDPGVRAKIAVHATD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +++DE+ Sbjct: 245 SRVDPIGTCVGVRGSRVQAVTQELAGERVDIVLWSEDPAQFVIGALAPANVSSILVDEER 304 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L+LAIG G+NVRLAS+LTGW I++++ EE ++ + FM+ Sbjct: 305 HVMDVVVDEDNLALAIGTGGRNVRLASELTGWQINLMSAEESEKKQEDERAAIRGVFMER 364 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 365 LDVDAEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVNELRERARNALLTQAIATE 424 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E +++L S+ G+D ++ V L E ++T +DLA +VD+L+ +E Sbjct: 425 EKLNET--ADDLLSLEGMDRELAVKLAEANVRTRDDLAELAVDELIEITE---------- 472 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +++I+ AR W +E Sbjct: 473 -------LDEERAKALILKAREH--WFVEE 493 >gi|119504358|ref|ZP_01626438.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2080] gi|119459866|gb|EAW40961.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2080] Length = 490 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 201/509 (39%), Positives = 318/509 (62%), Gaps = 23/509 (4%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 +A+AV+ EK + D++ + ++ AA+ Y +DI V I+ +G+ R VV Sbjct: 1 MVAEAVSAEKGVSEDIIFEAIELALATAAKKRYEEEADIEVVIDRVSGEYQTRRRWLVVP 60 Query: 71 EVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + E Q + + A + D ++ IG V + + DFGR+A Q+AKQVI+Q+VR+AER Sbjct: 61 DTELALLGTQFTTEEAAEADANLQIGDVHEEIIENADFGRIAAQTAKQVIVQRVRDAERA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIY 187 + ++D++GE+++G VK+V NVIVDLGN ++G++ R E + RE R DRV++ + Sbjct: 121 QIVDLYRDRIGELLAGIVKKVTRDNVIVDLGNNAEGLLPRGELVGRETFRINDRVRAILS 180 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 ++ E RGPQ+++SR + + +LF +EVPEI G++Q++A +RDPGSRAK+AV + D Sbjct: 181 EINTESRGPQLVMSRACREMLTELFKIEVPEISEGVIQIRAAARDPGSRAKIAVKTGDQR 240 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED Sbjct: 241 IDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDEDSNT 300 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV V ++ L+ AIGR GQNVRLAS LTGWTI++++ +E ++ + E + FM A++ Sbjct: 301 MEVAVAEDNLAQAIGRGGQNVRLASDLTGWTINVMSTDEAVERQEAEAVEIIETFMNALD 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF ++E+A V + E+ IEGFDE + E++ RA++ L + I ++K Sbjct: 361 VDEDVAVVLVEEGFTTLDEVAYVPLEEMMGIEGFDEAISEELRARAKDALLTMAIATEEK 420 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 + ++ +E+L ++ G++ + GI TMEDLA VDDL+ Sbjct: 421 L-DVEPAEDLLTMDGMERHLAFVFASRGIVTMEDLAEQGVDDLMDIE------------- 466 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR W +E+ Sbjct: 467 ----DMTEERAGELIMTARAP--WFAEEE 489 >gi|157828686|ref|YP_001494928.1| transcription elongation factor NusA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933405|ref|YP_001650194.1| transcription elongation factor NusA [Rickettsia rickettsii str. Iowa] gi|157801167|gb|ABV76420.1| transcription elongation factor NusA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908492|gb|ABY72788.1| N utilization substance protein A [Rickettsia rickettsii str. Iowa] Length = 503 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNVGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|51473734|ref|YP_067491.1| transcription elongation factor NusA [Rickettsia typhi str. Wilmington] gi|51460046|gb|AAU04009.1| transcription elongation protein NusA (N utilization substance protein A) [Rickettsia typhi str. Wilmington] Length = 503 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 363/511 (71%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++++++ + +IQ A R YG +I+ +IN +TG+I Sbjct: 1 MSNIYNVEILQIIDSVAREKGISKEILIATVEQAIQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D+ RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDYARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ G+II+G VKR+EYG++IVDLG ++ +I++D+ I E+ +P D Sbjct: 121 RVIEAEREKQYNDFKDRKGDIINGIVKRIEYGDIIVDLGRAEAIIKKDQLIKGEHFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR + +VKLF +EVPEI I+QVK+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNKMLVKLFKLEVPEILEDIIQVKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLVPLAPSEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+ Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIRYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEQIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 D ++ +I AR+ Sbjct: 481 --------------NITDDNIKLLIKTARHH 497 >gi|34581537|ref|ZP_00143017.1| N utilization substance protein A [Rickettsia sibirica 246] gi|28262922|gb|EAA26426.1| N utilization substance protein A [Rickettsia sibirica 246] Length = 503 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q ++KLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLIKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|58582842|ref|YP_201858.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624709|ref|YP_452081.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58427436|gb|AAW76473.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368649|dbj|BAE69807.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 201/473 (42%), Positives = 315/473 (66%), Gaps = 5/473 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 2 SKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+ Sbjct: 62 RWEVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGD Sbjct: 122 VREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+A Sbjct: 182 RVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V ++ Sbjct: 242 VIAHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + + Sbjct: 302 VDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARK 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 362 LFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNA 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + ++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 422 ALAEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 474 >gi|229586874|ref|YP_002845375.1| transcription elongation factor NusA [Rickettsia africae ESF-5] gi|228021924|gb|ACP53632.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia africae ESF-5] Length = 503 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|255066627|ref|ZP_05318482.1| transcription termination/antitermination protein NusA [Neisseria sicca ATCC 29256] gi|255049211|gb|EET44675.1| transcription termination/antitermination protein NusA [Neisseria sicca ATCC 29256] Length = 500 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 319/517 (61%), Gaps = 30/517 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ +R Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTYRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+D+D ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDDDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RDLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELFAIEGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ + Sbjct: 424 TMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ + +I+ AR W +E Sbjct: 478 -------------GVDEEAAKKVILAAREH--WFTEE 499 >gi|261379110|ref|ZP_05983683.1| L Factor [Neisseria cinerea ATCC 14685] gi|269144431|gb|EEZ70849.1| L Factor [Neisseria cinerea ATCC 14685] Length = 500 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 207/516 (40%), Positives = 320/516 (62%), Gaps = 30/516 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EILQLAEALASEKNVDAEVVFQALEFALSSAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDIEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVTGTVKRVERHGIIVEIIAGKLDALIPRDQAIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEISDGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV+ AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMGALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DE+ ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + Sbjct: 304 IVIDEEKHAVDVIVSEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADKRNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RTLFVSHLNVDEETADILVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VS+++ S+ G+D+ + + L E I T +DLA SVD+L+ + Sbjct: 424 TIAIAAEEKLGE--VSDDMRSLEGVDADMLLKLAEADITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G ++ +++I+ AR W + Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTE 498 >gi|94501385|ref|ZP_01307905.1| N utilization substance protein A [Oceanobacter sp. RED65] gi|94426498|gb|EAT11486.1| N utilization substance protein A [Oceanobacter sp. RED65] Length = 497 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 206/515 (40%), Positives = 328/515 (63%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L +A+AV+ EK ++++V+ + ++ AA+ Y DIRV I+ +G+ +R Sbjct: 2 SKEILLVAEAVSNEKGVEKEVIFEAIELALAAAAKKRYEDEEPDIRVAIDRRSGEYETYR 61 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E V +++++ A D D ++ G + + +FGR+A Q+AKQ+I+QKV Sbjct: 62 HWTIVSNEVVPALGSELNMQEAADIDTNLKEGDSYEEQIENPEFGRIAAQAAKQIIMQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + ++D++GE++ GTVK+V N+IVDLGN ++G++ R++ ++RE R GDR Sbjct: 122 REAERAKITAAYEDRIGELVHGTVKKVTRDNIIVDLGNNAEGLLPREQLVAREVFRIGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V E RGPQ++LSR +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 182 LRAVLTSVNPENRGPQLILSRAAGSMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV EL +E++DIV+W + A VINAL PA V +V+ Sbjct: 242 KSNDQRIDPVGACVGMRGARVQAVSNELGNERVDIVLWDDNPAQLVINALAPAEVESIVM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V ++QL++AIGR GQNV+LAS+LTGW I+++TEEE +Q++ Q Sbjct: 302 DEETNSMDVAVAEDQLAIAIGRGGQNVKLASELTGWVINVMTEEEAGEKQQQEQGSLVQK 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M A+++DE +A +LV EGF ++E+A V E+ I+GFDEE E+Q RA++ L Sbjct: 362 LMDALDIDEDMAAVLVGEGFTGLDEVAYVPREEMLEIDGFDEEVVDELQARAKDVLLTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++K+ + +E+L ++ G+D + + L +GI TMEDLA VDD+ Sbjct: 422 IASEEKLEDAQPAEDLLNMEGMDQHLALVLASHGIVTMEDLAEQGVDDISSLE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR W E+ + Sbjct: 475 ----------GLDEEKAAQLIMTARKP--WFEESE 497 >gi|225075066|ref|ZP_03718265.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens NRL30031/H210] gi|224953550|gb|EEG34759.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens NRL30031/H210] Length = 501 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 209/517 (40%), Positives = 318/517 (61%), Gaps = 30/517 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR+ + Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ + +I+ AR W +E Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEE 499 >gi|15892740|ref|NP_360454.1| transcription elongation factor NusA [Rickettsia conorii str. Malish 7] gi|20139038|sp|Q92HF4|NUSA_RICCN RecName: Full=Transcription elongation protein nusA gi|15619917|gb|AAL03355.1| N utilization substance protein A [Rickettsia conorii str. Malish 7] Length = 503 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG DI+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYDIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF++DSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFAADSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|254428350|ref|ZP_05042057.1| NusA N-terminal domain family [Alcanivorax sp. DG881] gi|196194519|gb|EDX89478.1| NusA N-terminal domain family [Alcanivorax sp. DG881] Length = 502 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 204/518 (39%), Positives = 326/518 (62%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ +G+ FR Sbjct: 2 NKEILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRVSGNAKSFR 61 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + VV EE+ + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+QKV Sbjct: 62 VWHVVPDEELYEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + E++D++G+++SGTVK+ ++I+DLG N++ +I R+ I RE +R DR Sbjct: 122 REAERRQIVEEYRDRIGDLVSGTVKKASRDSIILDLGGNAEALITREHMIPREAVRQNDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+ V E RGPQ+ SR P +++LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 182 IRAYLLGVNEENRGPQLFASRACPDMLIELFKIEVPEIGEELIEIKGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +V+ Sbjct: 242 KTNDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASIVM 301 Query: 302 DEDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Q Sbjct: 302 DEESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAETKQEEEAEQALQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L Sbjct: 362 TFINELDVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALLTK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++K + +E+L ++ G+D ++ V L GI TMEDLA +VDDLL Sbjct: 422 ALVSEEKFEQAEPAEDLLNMEGMDRELAVELASRGIVTMEDLAEQAVDDLLEIE------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G +++ +I+ AR W E E A Sbjct: 476 -----------GLSEERAAELIMTARAP--WFEGEDEA 500 >gi|67459264|ref|YP_246888.1| transcription elongation factor NusA [Rickettsia felis URRWXCal2] gi|67004797|gb|AAY61723.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia felis URRWXCal2] Length = 503 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 241/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKVYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+A+ EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAITNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIATSEVSALTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|15604408|ref|NP_220925.1| transcription elongation factor NusA [Rickettsia prowazekii str. Madrid E] gi|20139314|sp|Q9ZCZ7|NUSA_RICPR RecName: Full=Transcription elongation protein nusA gi|3861102|emb|CAA15002.1| N UTILIZATION SUBSTANCE PROTEIN A (nusA) [Rickettsia prowazekii] gi|292572170|gb|ADE30085.1| N utilization substanceprotein A,transcription termination factor NusA [Rickettsia prowazekii Rp22] Length = 503 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 241/511 (47%), Positives = 361/511 (70%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIYNIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ G+II+G VKR+EYG++IVDL ++ +I++D+ I E+ +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGDIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGEHFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+ Sbjct: 301 KILIDEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR+ Sbjct: 481 --------------NITDENIKLLIKTARHH 497 >gi|157964683|ref|YP_001499507.1| transcription elongation factor NusA [Rickettsia massiliae MTU5] gi|157844459|gb|ABV84960.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia massiliae MTU5] Length = 503 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 242/487 (49%), Positives = 352/487 (72%), Gaps = 3/487 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEAIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKF 484 E Sbjct: 481 NITDENI 487 >gi|241760381|ref|ZP_04758476.1| transcription elongation factor NusA [Neisseria flavescens SK114] gi|241319259|gb|EER55737.1| transcription elongation factor NusA [Neisseria flavescens SK114] Length = 501 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 209/517 (40%), Positives = 318/517 (61%), Gaps = 30/517 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPEVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR+ + Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ + +I+ AR W +E Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEE 499 >gi|298369368|ref|ZP_06980686.1| transcription termination/antitermination protein NusA [Neisseria sp. oral taxon 014 str. F0314] gi|298283371|gb|EFI24858.1| transcription termination/antitermination protein NusA [Neisseria sp. oral taxon 014 str. F0314] Length = 500 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 204/516 (39%), Positives = 322/516 (62%), Gaps = 30/516 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDTEVVFQALEFALSTAAKKKANREHMDVRVEIDRDTGEYRTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + L FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTEIQIGEYYEEQLENEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF + +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQILNEFLARKEDIVSGTVKRVERHGIIVEVVSGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ + V QV+LSRT F+ KL+ MEVPEI +G ++++AV+RDPG RAK Sbjct: 184 RIRALLLRVDEIGSTGRKQVILSRTDKNFLAKLYAMEVPEIEDGSLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP++A FVINAL PA VT+ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPETAQFVINALSPAEVTR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++V+V ++QL+LAIGR GQNVRLAS LT W ++I+T E + + Sbjct: 304 IVIDEDKHAVDVVVAEDQLALAIGRGGQNVRLASDLTEWQLNIMTVAEADERNEAEDEAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F + +N+DE A +L+ EGFA +EE+A V +E+ I+GFDEE ++ RAR+ + Sbjct: 364 RKLFTEHLNIDEETADILLQEGFATLEEVAYVPAAELLEIDGFDEEIVEVLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ + V+++L S+ G+D+++ L + GI T +DLA +VD+L+ + Sbjct: 424 TLAIASEEKLED--VADDLRSLEGLDTEMLRDLAQAGIITRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ + +I+ AR W + Sbjct: 478 -------------GVTEEEAKKVILAAREH--WFTE 498 >gi|319637701|ref|ZP_07992467.1| N utilization substance protein A [Neisseria mucosa C102] gi|317400856|gb|EFV81511.1| N utilization substance protein A [Neisseria mucosa C102] Length = 497 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 207/516 (40%), Positives = 317/516 (61%), Gaps = 30/516 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 1 MLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GDR Sbjct: 121 DAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGDR 180 Query: 182 VKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK+ Sbjct: 181 IRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 301 VIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 NLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 421 MTIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ + +I+ AR W +E Sbjct: 474 ------------GVDEEEAKKVILAAREH--WFTEE 495 >gi|239946885|ref|ZP_04698638.1| transcription elongation factor NusA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921161|gb|EER21185.1| transcription elongation factor NusA [Rickettsia endosymbiont of Ixodes scapularis] Length = 503 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 242/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVENVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+++RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSIARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ + N Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNS 480 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 + ++ +I AR Sbjct: 481 --------------NITDENIKLLIKTARQH 497 >gi|319760247|ref|YP_004124185.1| transcription elongation protein nusA [Candidatus Blochmannia vafer str. BVAF] gi|318038961|gb|ADV33511.1| transcription elongation protein nusA [Candidatus Blochmannia vafer str. BVAF] Length = 507 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 190/520 (36%), Positives = 308/520 (59%), Gaps = 30/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ ++ + + ++ A + Y DIRV I+ ++G I FR Sbjct: 2 NKEILFVVEAVSNEKSVPKEKIFLALESALITATKKQYQQDIDIRVTIDRKSGKICTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++V + T +I+L+ AR + I I + D + + F R+ Q+AKQVIIQK+REA Sbjct: 62 WIVVDQVVHPTKEITLEAARLENSKISINDYIEDIVESVGFDRITTQTAKQVIIQKLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F ++ G II+G +K++ + VDLGN ++G+I+R++ + REN R GDR++ Sbjct: 122 ERMIIIEQFLNRQGSIITGVIKKINRNAIHVDLGNNAEGIIKREDMLPRENFRLGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+ E +G Q+ +SRT + +++LF +EVPEI ++ VK+ +RDPGSR+K+AV ++ Sbjct: 182 ILCLVKPESKGHQLFISRTCTEMLIELFRIEVPEIGEEVITVKSAARDPGSRSKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E+ID+++W + FVINA+ PA V +++DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELGGERIDVILWDDNPVQFVINAMSPADVVSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQN+RL SQL+GW ++++T E RQ + F+ Sbjct: 302 KHSMDISVDESNLAQAIGRNGQNIRLVSQLSGWALNVMTTHELEKKRQSELYNTINIFVH 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEG-FDEETAVEIQGRAREYLEG---- 419 +N+DE A +L+ GF+ +EELA V I+E+ SI G FD +T ++ +A++ L Sbjct: 362 VLNIDEKSARVLIDSGFSSLEELAYVPITELLSIGGVFDIKTVELLRSKAKQALTNFTES 421 Query: 420 ------IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + + Q + EL + G+ +I + L E+GI T++DLA D+L Sbjct: 422 GGSIGSMHKSNQDNCDSVNAVSELLKLSGLKYEIALKLVEHGIYTLQDLAEQ---DILSL 478 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 SE K ++ +I+ AR + W Sbjct: 479 SEIK--------------ELTTKEIGDLIMEAR-NICWFN 503 >gi|261379745|ref|ZP_05984318.1| L factor [Neisseria subflava NJ9703] gi|284797423|gb|EFC52770.1| L factor [Neisseria subflava NJ9703] Length = 501 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 208/517 (40%), Positives = 319/517 (61%), Gaps = 30/517 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP++A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPETAQFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ +I+GFDEE ++ RAR+ + Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIDGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ + +I+ AR W +E Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEE 499 >gi|294085149|ref|YP_003551909.1| NusA antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292664724|gb|ADE39825.1| NusA antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 531 Score = 536 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 260/511 (50%), Positives = 353/511 (69%), Gaps = 17/511 (3%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S +EL+Q+AD VA EKSIDR+ V+ M ++IQKA R+ YG DIR I+ ++G I L Sbjct: 5 SIPGMELIQVADVVAREKSIDREEVMLAMEEAIQKAGRAKYGLERDIRAMIDRKSGAIRL 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 R +EVVEEVE+ QIS+ P++ +G LPP++FGR+A Q+AKQVI QKV Sbjct: 65 ERWMEVVEEVEDDETQISVDEGAKLTPAVGLGEFSKQSLPPIEFGRIAAQTAKQVISQKV 124 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER RQ+ E+KD+VGEI+ GT+KR E ++ VDLG ++ VIRR+E I RENLR GDRV Sbjct: 125 RDAERARQFEEYKDRVGEIVVGTIKRAESYSITVDLGRAEAVIRREEMIPRENLRQGDRV 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++YI DVR EQRGPQ+ LSR +FM KLF EVPEIY+GI+++K V+R+ GSRAK++V Sbjct: 185 RAYIIDVREEQRGPQIFLSRACNEFMAKLFTQEVPEIYDGIIEIKGVAREAGSRAKISVL 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRGSRVQAVV EL+ EK++I+ ++ D A FV+NAL PA V KVV+D Sbjct: 245 SNDPGIDPVGACVGMRGSRVQAVVGELQGEKVEIIPFNDDPAAFVVNALAPAEVAKVVMD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E GR+EV+VP +QLSLAIGRRGQNVRLASQL+GW IDI+TE E+S RQ++F R+ F Sbjct: 305 EVAGRMEVVVPDDQLSLAIGRRGQNVRLASQLSGWYIDILTEAEESERRQEEFRTRSTGF 364 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++A+N+D++IAHLLVAEGF EE+A I E+A+I+GFDE+ A E+Q RA +Y+E Sbjct: 365 IEALNIDDVIAHLLVAEGFVLPEEIAESTIEELANIQGFDEDIATELQNRAVDYVERETT 424 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + + + +L V+++L + I + ++L EN I L + + E Sbjct: 425 RINEALDKLKVADDLRAFEYISLAMLLSLAENNI--------------LTLDDLADLDNE 470 Query: 483 KFDGFLSSLGTPKD-QVESMIIHARYKMGWI 512 + L G D + +I+ AR W Sbjct: 471 ELVSLLGEHGLSDDAEAGDIIMAARAH--WF 499 >gi|188577681|ref|YP_001914610.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522133|gb|ACD60078.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 199/465 (42%), Positives = 311/465 (66%), Gaps = 5/465 (1%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVEE- 71 DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R EVV + Sbjct: 2 DAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRWEVVADD 61 Query: 72 --VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VREAER + Sbjct: 62 VVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVREAERQQ 121 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188 +KD+VGE+I+G VKR E GN+ VDLG N++ I +D+ I R+ LRPGDRV+ Y+ + Sbjct: 122 VVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRVRGYLAE 181 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV + D+ Sbjct: 182 VRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVIAHDART 241 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++DED + Sbjct: 242 DPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVDEDKHSM 301 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 ++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q FM + V Sbjct: 302 DLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLFMDRLEV 361 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + ++ + Sbjct: 362 DEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAALAEEEGL 421 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 422 EGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 466 >gi|288940250|ref|YP_003442490.1| NusA antitermination factor [Allochromatium vinosum DSM 180] gi|288895622|gb|ADC61458.1| NusA antitermination factor [Allochromatium vinosum DSM 180] Length = 499 Score = 533 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 193/510 (37%), Positives = 306/510 (60%), Gaps = 25/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + V+ + ++ A R +G D+RV I+ +TG FR Sbjct: 2 SKEILNVVEAVSNEKDVPEGVIFEAIEAALASATRKKHGGEIDVRVTIDRKTGSYRTFRR 61 Query: 66 LEVVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 E+V + +E QI+ A +P + IG + + + FGR+A Q+AKQVI+Q Sbjct: 62 WEIVSDPESGMLEAPARQITASAAAILEPELSIGDFMEEEIESELFGRIAAQTAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPG 179 KVR+AER + F + G++++G VK+ E G +++DLGN ++ ++ RD I RE++RPG Sbjct: 122 KVRDAERAKIVDAFASRQGQLVTGIVKKAERGTILLDLGNNAEALVPRDHVIPRESVRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ Y+YDVR EQ+GPQ+ +SRT P+ +++LF +EVPE+ G++++ +RDPG RAK+ Sbjct: 182 DRLRGYLYDVRSEQKGPQLFVSRTAPELLIELFKLEVPEVGEGLIEILGAARDPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D IDPVGACVGMRGSRVQAV EL E++DI++W + A FVINA+ PA V + Sbjct: 242 AVRTRDPRIDPVGACVGMRGSRVQAVSNELNGERVDIILWDENPAQFVINAMSPADVVSI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DE+ ++V V +E L+ AIGR GQNVRLA+QL+GW ++++ E++ + +++ Sbjct: 302 VIDEEARSMDVAVKEENLAQAIGRFGQNVRLATQLSGWELNVMNEKDAAAKSEQEARRSA 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q FM + +DE +A LLV EGF+ V+E+A V + E+ +I+ D+ET ++ RA + L Sbjct: 362 QVFMDQLGIDEGLATLLVEEGFSSVDEVAYVPLDEMRAIDELDDETIELLRERANDVLVT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I ++ G+S L ++ G+D + L E GI T Sbjct: 422 RAIATEEVDEVGGMS--LSALEGMDEALVEVLAERGIAT-----------------LDDL 462 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKM 509 D + G +++ +I+ AR M Sbjct: 463 ADLAVDDLMEIEGMDEERAARLIMKAREPM 492 >gi|307256660|ref|ZP_07538439.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864708|gb|EFM96612.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 453 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 194/470 (41%), Positives = 299/470 (63%), Gaps = 20/470 (4%) Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD 105 D+RV I+ +TGD FR VVE+V N T +ISL+ A+ +PS+ +G +V D + + Sbjct: 2 DIDVRVVIDRKTGDFQTFRRWIVVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIP 61 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGV 164 F R+ +Q+A+QVI K+REAER++ +F+ ++ II+ TVK+V +I+DLGN ++ V Sbjct: 62 FDRITMQTARQVISTKIREAERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAV 121 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 I R++ + REN RPGDRV+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI ++ Sbjct: 122 IVREDMLPRENFRPGDRVRGVLYAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVI 181 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++K SRDPGSRAK+AV S D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A Sbjct: 182 EIKGASRDPGSRAKIAVKSHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPA 241 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FVINA+ PA V+ +V+DED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T Sbjct: 242 QFVINAMAPAEVSAIVVDEDKHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTT 301 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DE 403 E+ Q + N+ F+ A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE Sbjct: 302 EDLDKKHQAEDNKVISLFVSALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDE 361 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 A E+Q RA+ + + ++ +++ + + L ++ G+D I L E GI T+E+LA Sbjct: 362 NLAEELQTRAKNAITAKALAEEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELA 421 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + DDL E D+ +I+ AR ++ W Sbjct: 422 EQATDDLSDIEE-----------------LSADKASELIMAAR-QICWFS 453 >gi|225023298|ref|ZP_03712490.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC 23834] gi|224943943|gb|EEG25152.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC 23834] Length = 498 Score = 530 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 29/516 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RV I+ TG+ FR Sbjct: 4 EMLQLAEALASEKNVESEVVFEALEFALSVAAKKKADREHMDVRVSIDRNTGEYHTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ Q +++ ++ P + IG + L + FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDTQKTIEEIQEEFPDSPLQIGEYYEEELENVAFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ EF + +++ GTVKRVE +IV++G D +I RD+ I REN R GDR+ Sbjct: 124 RDAEREQILQEFLARREDVVMGTVKRVERHGIIVEIGRLDALIPRDQCIPRENFRSGDRI 183 Query: 183 KSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 ++ V + QV+LSRT +F+VKLF EVPEI +G++++K +RDPG RAK+A Sbjct: 184 RALFLRVDEQGNSGRKQVILSRTSREFLVKLFEQEVPEIEDGLLEIKEAARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D+ IDP G C+G+RGSRV AV EL E++D+V+WSP++A FVINAL PA V++++ Sbjct: 244 VKSNDARIDPQGTCIGVRGSRVNAVSNELAGERVDVVLWSPETAQFVINALSPAEVSRIL 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + + + Sbjct: 304 IDEDNHSVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVQEAEERHEAEDAQIRS 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FMQ +NVDE A LL+ EGFA +EE+A V +E+ I GFDE T ++ RAR+ + + Sbjct: 364 LFMQHLNVDEQTADLLIEEGFAALEEVAYVPAAELVEI-GFDEATVETLRNRARDAILTL 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I ++K+ E+ L ++ GID + L + GI T + LA S D+L+ + Sbjct: 423 AIMSEEKLDEVEEE--LKTLNGIDQDMLRDLAQAGITTRDSLAELSTDELIEIT------ 474 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +++I+ AR W + + Sbjct: 475 -----------GVSEEEAKTVILAAREH--WFAETQ 497 >gi|27904831|ref|NP_777957.1| transcription elongation factor NusA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340243|sp|Q89AF4|NUSA_BUCBP RecName: Full=Transcription elongation protein nusA gi|27904229|gb|AAO27062.1| N utilization substance protein A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 497 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 185/508 (36%), Positives = 313/508 (61%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV+IN + G+ FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALECALAIATKKKYDQEIDVRVKINRKNGNFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +V T +I+L+ A+ D ++ + + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNQVLQPTKEITLEAAKFEDVTVKVNDYIEDKMISVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+I++G VK++ ++ +DLGN ++ +I +++ + REN R GDRV+ Sbjct: 122 ERAMIVEQFRKYFGKILTGIVKKINRESITLDLGNNAEALILKEDMLPRENFRLGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y + E RG Q+ ++R+ P+ +++LF +EVPEI I+++K+ +RDPGSRAK+AV S+ Sbjct: 182 VLYAIYPESRGAQLFVTRSKPEMLIELFKIEVPEIGEEIIEIKSAARDPGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +D VGACVGMRG+RVQAV +EL E+IDIV+W +SA F+IN++ PA V+ +VLDED Sbjct: 242 DKRVDAVGACVGMRGARVQAVSSELCGERIDIVLWDKNSAQFIINSMAPAEVSSIVLDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 I++ V L+ AIGR GQNVRLASQL+GW I+++T ++ + Q++ ++ F + Sbjct: 302 RHTIDIAVDSNNLAQAIGRNGQNVRLASQLSGWEINVMTVDDLKLKHQEEKDKILNIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +D+ I+++L+ EGF+ +EEL + +E+ +I +E A I+ A++ L I++ Sbjct: 362 YLKIDQKISNILIDEGFSSIEELVYIPFNELLNINSITQELAYSIRESAKKALCAIELEN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +K I E + ++L ++ G++ K+ L + I ++EDLA +DDL+ Sbjct: 422 KKVINERKLHKDLLNLKGMNQKLAFKLAKKNIFSLEDLAEQGIDDLIDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 + +I+ AR + W Sbjct: 472 -------NLNSNTAGMLIMAAR-NICWF 491 >gi|319778227|ref|YP_004129140.1| Transcription termination protein NusA [Taylorella equigenitalis MCE9] gi|317108251|gb|ADU90997.1| Transcription termination protein NusA [Taylorella equigenitalis MCE9] Length = 490 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 192/509 (37%), Positives = 302/509 (59%), Gaps = 25/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ DA+A+EK++ + + + + ++ A + + +D+ V I+ +TG+ R E Sbjct: 4 EIIHFIDAMAHEKNLPVEEIFAAIEGALASAMKKQFKEGADVVVRIDRDTGNYVGVRRWE 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ + A + P I +G + +PL P +FGR+ Q A+QVI+QK+R+ Sbjct: 64 VVPDEHGIQEPEREEIYSDAVEDHPDIKVGDFIEEPLEPQEFGRIGAQIARQVILQKMRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 +ER + EF + +I+SG VKR++ G+V+V++G + + + E I +E+ R GDRV++ Sbjct: 124 SERKQWIDEFVAQNDKIVSGVVKRIDKGDVVVEVGKLEARLPKAEMIPKESFRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + +E +G + LSR P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 YVQKIDKEAKGQIIQLSRIDPEFLRELFEYEVPEIEQGLLEIKAAARDPGIRAKIAVQAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E+IDIV+WS + A FVI+AL PA V+ +++DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVGAVRHELNGEQIDIVLWSDEPAEFVISALSPAHVSSIIVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E L+ AIG RGQNVRLAS LTGW I+I+T EE +Q++ + F Sbjct: 304 KHVMDVVVDDENLAKAIGTRGQNVRLASDLTGWQINIMTPEESQARQQEEDQSIMKLFTD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE IA +L+ EGF +EE+A V E+ IEGFDEE E++ RAR L Sbjct: 364 KLDIDEEIATVLIEEGFTGLEEIAYVPEQELLEIEGFDEELVHELRNRARHSLSVAAAER 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ S+ L I G+ +++ L EN I T +DLA + D+L Sbjct: 424 DERVAS---SKGLIDIDGLTTEMVSKLVENNISTRDDLAELATDEL-------------- 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L L + +I+ AR W E Sbjct: 467 ---LEILDVDEATAYDIILKARAH--WFE 490 >gi|319941974|ref|ZP_08016295.1| N utilization substance protein A [Sutterella wadsworthensis 3_1_45B] gi|319804627|gb|EFW01497.1| N utilization substance protein A [Sutterella wadsworthensis 3_1_45B] Length = 514 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 205/527 (38%), Positives = 321/527 (60%), Gaps = 29/527 (5%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL--YGTMSDIRVEINPETGDISL 62 N ++L++ D +A EK++ +DVV V+ ++ A + G +DI V ++ TG+ S Sbjct: 2 NSRDMLELVDVLASEKNVAKDVVFGVLELALASAVKRARFPGEDADIVVRVDRTTGEFSA 61 Query: 63 FRLLEVVEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF---GRVAVQSAKQ 116 R VV + E Q D P + G + PL +D GR Q AKQ Sbjct: 62 VRRWLVVPDEEGLQEPDHQEMYSDIHDEFPDLQPGDYIERPLENVDVDSAGRRFAQDAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 VI+Q++R+AER++ EF ++ I++GT+KR++ G+ IV++G + + R++ I REN+ Sbjct: 122 VILQRLRDAEREQILAEFLERHETIVTGTIKRMDKGDAIVEVGRLEARLPRNQMIPRENM 181 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R GDRV++Y+ V +G V+LSRT P+F+ KLF +EVPEI GI+++KA +RDPG+R Sbjct: 182 RTGDRVRAYVDHVGDTPKGRTVILSRTSPEFIKKLFELEVPEIEEGIIEIKAAARDPGAR 241 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D +DP+G C+GMRGSRV AV TEL E+IDIVVW+ D A FV+ AL PA V Sbjct: 242 AKIAVASHDQRVDPIGTCIGMRGSRVNAVTTELSGERIDIVVWNADPAQFVVGALEPAKV 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V+ ED +EV+V ++ L++AIGR GQNVRLAS+LTGW I+I+T +E S R + N Sbjct: 302 RSIVMLEDSHTMEVVVDEDNLAVAIGRGGQNVRLASELTGWQINILTAQEASEKRAAEVN 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + FM+++++DE A++L+ EGF+ VEE+A V E+ SIE FD ET E++ RAR Sbjct: 362 RIREEFMKSLDIDEAAANVLIDEGFSSVEEIAYVPEKELFSIEAFDHETIEELRQRARNK 421 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 L IT ++ +R+ ++ ++ G+D+ + L G+KT++DL +V++L+ + Sbjct: 422 LLADAITREENLRKADP--KMLALEGMDNDLANKLVARGVKTLDDLGDLAVEELVEMT-- 477 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G +++ + +I+ AR W + AD+ + Sbjct: 478 ---------------GLDEERAKKLIMGARAH--WFGDGESADQPAE 507 >gi|329120394|ref|ZP_08249061.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200] gi|327462349|gb|EGF08675.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200] Length = 502 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 200/522 (38%), Positives = 312/522 (59%), Gaps = 31/522 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D DVV + ++ AAR G ++RVEI+ +TG+ +R Sbjct: 1 MLQLAEALASEKNVDADVVFDALEVALSTAARKKSGREHMNVRVEIDRDTGEHRTYRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ PS I IG + + FGR A +AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDEEKTIEEIQEEIPSTQIQIGEYYEEQIENESFGRQAAMTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ +F + +II+GTVKR E ++V+L G D +I RD+ I REN R GDR Sbjct: 121 DAEREKVLNDFLENRDDIITGTVKRTERHGIVVELIPGKLDALIPRDQCIPRENFRSGDR 180 Query: 182 VKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V + QV+LSR +F+ KLF EVPEI +G+++++ +RDPG RAK+ Sbjct: 181 IRALFLRVEEIGQSGRKQVILSRASREFLAKLFEQEVPEIADGLLEIREAARDPGHRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+WSPD+A FVINAL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVLWSPDTAQFVINALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + Sbjct: 301 VIDEDNHAVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVKEAEERHAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +NVDE A +LV EGF +EE+A V E+ I GFDE T ++GRAR+ + Sbjct: 361 SLFTEHLNVDEETATVLVEEGFTSLEEIAYVPSEELVEI-GFDEATVDALRGRARDAILS 419 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++K++E ++E+L ++ G D + L + GI + LA SVD+L+ + + G Sbjct: 420 LAMAKEEKLQE--IAEDLRTLDGTDEDMLRDLAQAGITDRDALAELSVDELIEITGVETG 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 E +I+ AR W E+ E Sbjct: 478 E-----------------AEKIILAARAH--WFEENNQEQGE 500 >gi|71891890|ref|YP_277620.1| transcription elongation factor NusA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795996|gb|AAZ40747.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 505 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 197/519 (37%), Positives = 314/519 (60%), Gaps = 27/519 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ ++ + + ++ A + Y ++RV I+ ++G I+ FR Sbjct: 2 NKEILAVIEAVSNEKAVPQEKIFEALETALAAATKKKYEQDVEVRVVIDRKSGQINTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V T +I+L AR +P + I V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVVVEQVTQPTKEITLDAARFENPKVQICDYVEDVIESISFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F ++ G+I++G VK++ ++ +DLGN ++G+I R+E + REN R GDR++ Sbjct: 122 ERAIIIEQFLNRQGDIVTGIVKKINRDSISIDLGNNAEGMINREEMLPRENFRLGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR + +GPQ+L+SRT + +++LF +EVPEI ++ +KA +RDPGSRAK+AV ++ Sbjct: 182 ILYLVRPDFKGPQLLISRTRTEMLIELFRIEVPEIGEELITIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E++D+++W + FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERVDVILWDDNPVQFVINAMSPADVASIVIDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L AIGR GQN+RL SQL+GW ++I+T +E RQ + T F+ Sbjct: 302 KHTMDISVEETNLPQAIGRNGQNIRLVSQLSGWELNIMTVDELEKKRQVEICTITNIFIH 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID-IT 423 ++N+ E A +L+ GF+ +EELA V ++E+ SI+ FD +T I+ RA+ L+ I Sbjct: 362 SLNISEQFAKILIDSGFSSLEELAYVPMTELLSIKEFDRKTVEIIRDRAKSALKNFSVIH 421 Query: 424 LQKKIREL-------GVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 +K I+E L +P I+ K+ + L E GI T+E+LA + DL Sbjct: 422 NEKNIKEDNYTAAVIHPVTGLLRLPNIEYKLALTLVERGISTLEELAEQDISDLSDIE-- 479 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G K+++ +I+ AR + W + Sbjct: 480 ---------------GLTKEKIGELIMEAR-NICWFNND 502 >gi|157803622|ref|YP_001492171.1| transcription elongation factor NusA [Rickettsia canadensis str. McKiel] gi|157784885|gb|ABV73386.1| transcription elongation factor NusA [Rickettsia canadensis str. McKiel] Length = 503 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 239/511 (46%), Positives = 353/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI ++VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIINSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE VE+Y QIS + A ++P+ IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVENVEDYLTQISFEEALIKNPAAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER +QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAERAKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +V LF +EVPEI+ I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVNLFKLEVPEIFEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N L A +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAAAAIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STGLFMEALDVEEVIGQLLSVTGFNSVEQIANSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + KK+ ELGV +E+ I + ++ + E GIKT+EDL SV++ + Sbjct: 421 NLKNEKIIKKLEELGVEQEVIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLA--- 477 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 S + ++ +I AR Sbjct: 478 -----------PSANITDENIKLLIKTARQH 497 >gi|116515165|ref|YP_802794.1| NusA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257019|gb|ABJ90701.1| transcription pausing L factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 495 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 188/510 (36%), Positives = 287/510 (56%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV++EKSI R+ + + +++ A + Y +IRV IN TG + +R Sbjct: 2 NKEILSVVDAVSHEKSIPREKIFQALESALEIATKKKYNQDINIRVCINRSTGSFNTYRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV V N T +I+L+ AR + I + + D + + F R+A Q AKQVIIQKVREA Sbjct: 62 WLVVNNVFNPTKEITLEAARFENKKIQLCDYIEDCIDSVTFDRIATQIAKQVIIQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 E++ +F K G+II G VK++ +I+D+GN +G+I R++ + REN R DRV+ Sbjct: 122 EKEIILNKFDKKKGQIIIGIVKKISRDYIILDVGNNIEGIIMREDMLPRENFRINDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y++ E++G Q+ +SR+ +++LF +EVPEI +++KA++RDPG R+K+AV + Sbjct: 182 ILYNISYEKQGAQLFISRSKSDMLIELFRIEVPEIREKFIEIKAIARDPGLRSKIAVTTY 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL E+IDI++W + FVIN++ PA V+ + LD Sbjct: 242 DERIDPVGACVGMRGSRVQAVSNELCGERIDIILWDNNPKKFVINSMAPADVSSIFLDNT 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 I + V L+ AIGR GQNVRLASQLTGW ++IIT ++ N Sbjct: 302 NHVINIEVKLCNLAQAIGRNGQNVRLASQLTGWELNIITSNPIIKIKKSKKNNFFDILKN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 N E L++ GF+ ++ +A I+++ SI+G + + +Q +A LE Sbjct: 362 KFNFTENDILLVIHSGFSSIKSIAYASINQLLSIKGIKTDVVLNMQKKAIFILENDKKKS 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K ++ ++ E ++ I+ I L E I T+E LA S+DDL Sbjct: 422 IKIYKKKYLNSEFANLKNINKFIIQQLIEKKICTLEHLAEQSIDDL-------------H 468 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 D T S+I+ AR + W + Sbjct: 469 DISFLFFRTSW----SLIMEAR-NICWFNE 493 >gi|32490976|ref|NP_871230.1| transcription elongation factor NusA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166182|dbj|BAC24373.1| nusA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 494 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 182/509 (35%), Positives = 308/509 (60%), Gaps = 20/509 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+R+ I+ ++G FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALEKALAAATKKKHEKDIDVRISIDRKSGSFGTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A+ +P + + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WMIVDEVTQPTKEITLEAAKIENPEAKLKEYIEDKIKSVLFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +FK++ GEII+G VK++ V +DLG+ ++ VI +++ + +E RPGDRV+ Sbjct: 122 ERSMIVNKFKERKGEIITGIVKKLNRDGVSLDLGSHAEAVINKEDMLPKEYFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y + E +G Q+ +SR+ + +++LF +EVPEI ++ +KA +RDPG R+K+AV ++ Sbjct: 182 VLYYINPESKGAQLFISRSKKEMLIELFRIEVPEIGEEVINIKATARDPGLRSKIAVQTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA VT +V+DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSRELGGERIDIVLWDENPAQFVINAMSPADVTSIVIDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V E L+ AIG+ GQN+RLASQL+GW ++++TE++ + + F++ Sbjct: 302 NHTMDIAVNSENLAQAIGKNGQNIRLASQLSGWELNVMTEKDLKNKNKAEEENSMNLFLE 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N+++ +A LV EGF+ +E++A + I+E+ SI+ +E+TA ++ +A+ L I + Sbjct: 362 HLNINQELAKNLVKEGFSKIEDIAYIPINELLSIDILNEKTAKLLKEQAQYALTKIALMK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K + E+L + G++S I E GI T+EDLA +DD+ Sbjct: 422 EEK-ELTSLDEKLIKLSGVNSNIAYKFAEKGIFTLEDLAEQGIDDISDIK---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + +I+ AR + W Sbjct: 471 -------DLSNKKAGELIMAAR-NICWFN 491 >gi|254700792|ref|ZP_05162620.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] gi|261751301|ref|ZP_05995010.1| transcription elongation protein nusA [Brucella suis bv. 5 str. 513] gi|261741054|gb|EEY28980.1| transcription elongation protein nusA [Brucella suis bv. 5 str. 513] Length = 356 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 259/354 (73%), Positives = 309/354 (87%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEF 356 >gi|167630355|ref|YP_001680854.1| transcription termination factor nusa [Heliobacterium modesticaldum Ice1] gi|167593095|gb|ABZ84843.1| transcription termination factor nusa [Heliobacterium modesticaldum Ice1] Length = 442 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 156/389 (40%), Positives = 243/389 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E L + EK I ++++L + ++ A + +G++ ++RV I+ TG+ ++ Sbjct: 2 NVEFLTALKDLEREKGISKEILLEAIEAALISAYKKNFGSLQNVRVHIDRSTGEFKVYSR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEE+ + ++ L A+ DP+ + V+ + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KLIVEELTDPRVEVLLADAQRIDPNYQVNDVIETEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ G+I++G V+R E NV VDLG + ++ E ++ E R DR+K+Y Sbjct: 122 ERGMIYEEFSNREGDIVTGIVQRTENKNVFVDLGKVEALLAPSEQMNGETYRHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQVL+SRTHP + +LF +EVPEI++G V++KA SR+ G+R+K+AV+S D Sbjct: 182 IVEVKKTTKGPQVLISRTHPGLLKRLFELEVPEIHDGTVELKAASREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQAVV EL+ EKIDIV W+PD A FV NAL PA V V + E+ Sbjct: 242 ENVDPVGACVGPKGMRVQAVVNELKGEKIDIVKWNPDPAKFVANALSPAKVVSVDIIEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + + + Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTAKAAFIDHDENYDAEY 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + DE + +E A + Sbjct: 362 EDFDEQVGEDYNEAYDDAYDEEAYDDAYD 390 >gi|325267087|ref|ZP_08133756.1| N utilization substance A [Kingella denitrificans ATCC 33394] gi|324981440|gb|EGC17083.1| N utilization substance A [Kingella denitrificans ATCC 33394] Length = 499 Score = 510 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 186/515 (36%), Positives = 306/515 (59%), Gaps = 28/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+L + +A+A EK+++ DVV + ++ AA+ ++ V IN +TG+ R Sbjct: 4 EILALVEALASEKNVEPDVVFEALEVALGIAAKKKADREHMNLEVRINRDTGEYRTVRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I++G + +P FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEIPGIDINVGDYFEEDIPNEAFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 R+AER++ F +I+ GTVKRVE ++V+L D +I RD+ + REN R GD+ Sbjct: 124 RDAEREQILNAFLATREDIVVGTVKRVERHGIVVELAPKLDALIPRDQMLPRENYRGGDK 183 Query: 182 VKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ V G Q+LLSRT +F+ KLF EVPEI +G++ ++ V+RDPG RAK+A Sbjct: 184 IRALFLRVEEFNGGRKQILLSRTSGEFLRKLFEQEVPEIADGLLDIREVARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP G C+G+RGSRV AV EL E+ID+V+WS D+A FVINAL PA V+++V Sbjct: 244 VKSNDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSDDTADFVINALSPAQVSRIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E +++ + Sbjct: 304 IDEEKNAVDVIVTEDQLALAIGRGGQNVRLAAELTGLQLNIMTVQEAEQRSEEEAAALRE 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + DE +A LV F +EE+A V +S++ IE D+E A ++ +AR+ L Sbjct: 364 LFTSQLGADETVAQALVDAEFTSIEEVAFVPMSDLTDIEEIDDELAETLRAKARDVLLQT 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++K+ V+++L + G+D + L + I EDLA S+D+L+ + Sbjct: 424 ELAAEEKLN--SVADDLRELEGVDDDMLRDLVDANITNREDLAELSIDELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ E +I+ AR W ++ Sbjct: 476 -----------GVSHEEAEQVIMAARAH--WFAQD 497 >gi|323144579|ref|ZP_08079168.1| transcription termination factor NusA [Succinatimonas hippei YIT 12066] gi|322415655|gb|EFY06400.1| transcription termination factor NusA [Succinatimonas hippei YIT 12066] Length = 493 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 198/514 (38%), Positives = 311/514 (60%), Gaps = 27/514 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E++ IA+A++ E++I RD + + ++ A + Y +RV I+ + G +R Sbjct: 3 KEIIAIAEALSNERAIPRDKIFEALETALATATKKKYPVDIAVRVAIDRKDGSYRTYRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V++ +EN ++SL A++ I G VV + +P + F R+ +Q+AKQV+ QKV+ Sbjct: 63 NVIDTDGPLENPASEVSLAAAKEDHQGIQAGDVVEEEIPSVKFDRITIQTAKQVLSQKVK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 +AER++ E ++ +G +++ TVK+ +I+DLGN ++ V+RRD+ I E GDR+ Sbjct: 123 DAEREQIIAEQREHLGHVVNATVKKQGRDFLILDLGNNAEAVLRRDQIIPHETFGRGDRI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + ++R + +GPQ++ SRT +F+ +LF +EVPEI I+++ +V+RDPGSRAK++V Sbjct: 183 KVLLSEIRADGKGPQIICSRTANEFLSELFRIEVPEIGEDIIEIMSVARDPGSRAKISVR 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP GAC+GMRG+RV AV EL EKID+V+W + A +V NA+ PA V+K++++ Sbjct: 243 SKDRRIDPRGACIGMRGARVMAVSNELAGEKIDVVLWDENLAQYVNNAMEPAEVSKIIIN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED I+V V E L+LAIGR GQNVRLASQ+ GW + ++TE E + + + + F Sbjct: 303 EDSHTIDVAVADENLALAIGRNGQNVRLASQILGWNLKVMTESEMEEGLKAEEGKVIKTF 362 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A+N+D+ A L + GF +EE+A V I E SIEG D ETA+ +Q AR+ L Sbjct: 363 VDALNIDDEFAEALSSVGFTTLEEIAYVPIEEFESIEGIDRETAIILQENARKAL----A 418 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K++E G SE L + GIDS + + L GIK E+LA +VDDLL Sbjct: 419 EREEKLKESG-SESLTKLEGIDSDLAMKLVAVGIKDPEELAEQAVDDLLDIE-------- 469 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR W + EK Sbjct: 470 ---------GMTEEKAGQIIMAAR-NECWFKDEK 493 >gi|294788742|ref|ZP_06753983.1| transcription termination/antitermination protein NusA [Simonsiella muelleri ATCC 29453] gi|294483224|gb|EFG30910.1| transcription termination/antitermination protein NusA [Simonsiella muelleri ATCC 29453] Length = 500 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 187/518 (36%), Positives = 307/518 (59%), Gaps = 28/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK+++ +VV + ++ AA+ D+ V I+ +TG+ R Sbjct: 4 EILALAEALASEKNVEPNVVFEALETALGIAAKKKADREHMDLEVRIHRDTGEYRTVRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I +G + +P FGR A Q+AKQ+I+QK+ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEIPGIDIQVGDYYEEDIPNEAFGRQAAQTAKQIILQKI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 R+AER++ F +I+ GTVKRVE ++V++ D +I R++ + REN R GD+ Sbjct: 124 RDAEREQILNAFLATREDIVVGTVKRVERHGIVVEIAPKLDALIPREQALPRENYRSGDK 183 Query: 182 VKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ + V G QV+LSR+ +F+ KLF EVPEI +G+++++ VSRDPG RAK+A Sbjct: 184 IRALFWKVEELNGGRKQVMLSRSSGEFLRKLFEQEVPEIADGLLEIREVSRDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+ F+INAL PA V +++ Sbjct: 244 VKSNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDAGDFIINALSPANVGRII 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ +VIV ++QL+LAIGR GQNVRLA+ LTGW ++I+T +E + + Sbjct: 304 IDEEKHACDVIVEEDQLALAIGRGGQNVRLAADLTGWQLNIMTVKEAEERNAAEDAAIRE 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM +N+ E IA++LV EGF +EE+A V I E+ IE + +I+ +AR+ + Sbjct: 364 IFMSQMNLSEDIANILVQEGFTSIEEVAYVAIDELQEIEDLSADDVDDIRTKARDAVLKA 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++K+ + + ++L ++ G+D + L E I +DLA S+D+L+ + Sbjct: 424 ALEAEEKLNQ--IDQDLKNLDGMDEDMLRDLAEANITHRDDLAELSLDELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G KD+ E +I+ AR W E A Sbjct: 476 -----------GVSKDEAEKVIMAARAH--WFADETNA 500 >gi|213425433|ref|ZP_03358183.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 431 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 179/448 (39%), Positives = 278/448 (62%), Gaps = 24/448 (5%) Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER + Sbjct: 1 MPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQ 60 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVKSYIY 187 F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ +Y Sbjct: 61 FRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLY 120 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 121 AVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 180 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 181 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT 240 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F + ++ Sbjct: 241 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLD 300 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 301 IDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEAS 360 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 361 LGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE------------- 407 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 408 ----GLTDEKAGELIMAAR-NICWFGDE 430 >gi|119713529|gb|ABL97582.1| transcription elongation factor NusA [uncultured marine bacterium EB0_35D03] Length = 491 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 189/515 (36%), Positives = 309/515 (60%), Gaps = 31/515 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL + +A++ EK+I +D V+ + +++ A + D+RVE++ +G+ + FR Sbjct: 2 DGKELFLMIEAISNEKNITKDDVIESLEEALAVATKKR--NNIDVRVEVDRHSGEFNTFR 59 Query: 65 LLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +V+E+ E + T L + + +++ V +P+ M+FGR+A Q AKQVI Sbjct: 60 RWQVIEDGEQFVDDDGNTFDSELHIYQAESGGLEVDAYVEEPMESMEFGRIAAQVAKQVI 119 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 IQKVREAER F +VGE++ TVKRV+ GNV VD+G DG+I + + I E++R Sbjct: 120 IQKVREAERTVVVDNFTQRVGEVVMATVKRVDRGNVFVDMGGIDGMISKYDLIPNESIRK 179 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI +V+ RG Q+ LSRT M++LF MEVPEI G++++KA +RDPG R+K Sbjct: 180 NDRLRAYIKEVKSTPRGAQIFLSRTVNDMMIELFEMEVPEISEGVIEIKAGARDPGLRSK 239 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 LAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ Sbjct: 240 LAVKAKDKRIDPIGSCIGMRGARVQAVSNELNGERVDIILWDEDPAQFVINAMAPAEVSS 299 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DE+ G +++ V ++QL+LAIGR GQN++LAS+LTGW +++++ + + K+ + Sbjct: 300 IVVDEEKGSMDIAVEEDQLALAIGRGGQNIKLASKLTGWKLNVMSLADADDMQAKELQKT 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + + + VD +A +L+ EG+ ++E+A + ++ IE FD E E+Q RA++ Sbjct: 360 GEKLAEKLGVDAEVAGVLIDEGYTSLDEIADAESDVLSKIEEFDSEMVGELQERAQDA-- 417 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + + +E L + G+D + +L + I T+E LA ++ +L Sbjct: 418 ----QLVKALNDSEATEILLGVEGVDDALANSLVDAEITTVEALAELAIVEL-------- 465 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L D ++I+ AR K GW + Sbjct: 466 ---------LEIQDVGNDNASAIIMAAREKEGWFD 491 >gi|88657698|ref|YP_507374.1| transcription elongation factor NusA [Ehrlichia chaffeensis str. Arkansas] gi|88599155|gb|ABD44624.1| N utilization substance protein A [Ehrlichia chaffeensis str. Arkansas] Length = 517 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 212/527 (40%), Positives = 342/527 (64%), Gaps = 32/527 (6%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + + LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG ++ Sbjct: 6 NFDNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYGNCK-IKVTVDKKTGVVAT 64 Query: 63 FRLLEV--------VEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMD 105 +R + V V E + I+L A+ D ++++G ++ +PLP +D Sbjct: 65 YRQVLVINNNGDISVPEGKENEIDFSDVSKYKLITLAEAKQIDKNVEVGDIMLEPLPVID 124 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI 165 + + AKQ I Q + ER +QY +FKD+VG+I+ GT KR+EY NVIVDL ++G + Sbjct: 125 LDYSSAKIAKQKIAQVIISEERKKQYEDFKDRVGDIVYGTAKRIEYNNVIVDLNGNEGYL 184 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV Sbjct: 185 SASNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVT 244 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A Sbjct: 245 IKAIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAK 304 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 F++NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E Sbjct: 305 FIVNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDE 364 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 +S + K+ + ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE Sbjct: 365 TESSRKAKELSAGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEI 424 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 A E++ RA +YL D +++ + L V +++ +P + +AL +NGI ++ED+AG Sbjct: 425 AEELKSRAADYLVRKDAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGL 484 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ + + KDQV+S+I+ +R K+GW+ Sbjct: 485 CTDEFFD--------------IIPDIALTKDQVDSVILESRKKIGWL 517 >gi|260893511|ref|YP_003239608.1| NusA antitermination factor [Ammonifex degensii KC4] gi|260865652|gb|ACX52758.1| NusA antitermination factor [Ammonifex degensii KC4] Length = 365 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 164/353 (46%), Positives = 234/353 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E LQ + E+ + +V+LSV+ ++ A R +GT + RVEI+ TG+ + Sbjct: 2 NAEFLQALRDLERERGLKTEVLLSVIEAALLSAYRRNFGTAQNARVEIDRTTGECRVLAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ +ISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q+++EA Sbjct: 62 RTVVEEVKDPRTEISLAEAREIDPRYQVGDVVEIEVTPRDFGRIAAQTAKQVVMQRIKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y F + G+I++GTV R + NV +DLG ++ ++ E I E R GDRV++Y Sbjct: 122 ERNMIYEAFAGREGDIVTGTVHRADKQNVYLDLGKTEAILPAAEQIPGERYRQGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VRR +GPQ++LSRTHP F+ +L +EVPE+ G V++K + R+PGSR+K+AV+S D Sbjct: 182 ILEVRRTPKGPQIILSRTHPGFLRRLLELEVPELQEGTVELKNLVREPGSRSKVAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RGSR+QAVV ELR EKID+V W PD + F+ AL PA VT V + E+ Sbjct: 242 PHVDPVGACVGPRGSRIQAVVNELRGEKIDVVRWDPDPSRFIAEALSPAKVTAVEIWEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + +++ Sbjct: 302 KIARVIVPDNQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYAREYASY 354 >gi|332968911|gb|EGK07958.1| N utilization substance A [Kingella kingae ATCC 23330] Length = 499 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 183/515 (35%), Positives = 310/515 (60%), Gaps = 28/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK++D +VV + ++ AA+ ++ V I+ ETG+ R Sbjct: 4 EILALAEALASEKNVDPNVVFEALETALGIAAKKKADREHMNLEVRIHRETGEYKTVRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I++G + +P FGR A Q+AKQ+I+QK+ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEQPGIEIEVGDYYEEEIPNEAFGRQAAQTAKQIILQKI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 R+AER++ F +++ GTVKRVE ++V++ D +I R+ + REN R GD+ Sbjct: 124 RDAEREQILNGFLANREDVVVGTVKRVERHGIVVEIAPKLDALIPREHMLPRENYRGGDK 183 Query: 182 VKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ V G QV+LSR +F+ KLF EVPEI +GI++++ V+RDPG RAK+A Sbjct: 184 IRALFLKVEEFNGGRKQVMLSRASTEFLRKLFEQEVPEIRDGILEIREVARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++V Sbjct: 244 VHTNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +++++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+TE+E ++ Sbjct: 304 INDEMQSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTEQEAEQRNAEEELALRD 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + DE +A LVA F +EE+A V +S++ ++G D+ TA ++ +ARE L Sbjct: 364 LFMSQLGADESVALALVAAEFTSIEEVAFVPMSDLTDLDGVDDATAENLRNKAREVLLQT 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++K+ ++++L ++ G+D + L + I +DLA S+D+L+ + Sbjct: 424 ELEAEEKLN--SIADDLRNLDGLDDDMLRDLVDANITNRDDLAELSIDELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G K++ E +I+ AR W + Sbjct: 476 -----------GVSKEEAEQVILTARAH--WFADD 497 >gi|148244225|ref|YP_001218919.1| transcription termination factor NusA [Candidatus Vesicomyosocius okutanii HA] gi|146326052|dbj|BAF61195.1| transcription termination factor NusA [Candidatus Vesicomyosocius okutanii HA] Length = 491 Score = 506 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 184/515 (35%), Positives = 296/515 (57%), Gaps = 31/515 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL + +A++ EK+I ++ VL + ++ A + D VEIN +TG+ FR Sbjct: 2 DGKELFLMVEAISNEKNISKEEVLESLEKALAIATKKR--NNIDAYVEINRQTGEFLTFR 59 Query: 65 LLEVVEE----VENYTCQISLK--VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 VV + V++ + L+ + + + + P+ +FGR+A Q KQVI Sbjct: 60 QWMVVADGELFVDDDGTEFDLELHIYEKDTDGLVVDDYMRKPIETQEFGRIAAQIVKQVI 119 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 IQKVREAER+ ++ ++GE+I TVKRV+ GN+ VD+G DG+I + + I E++R Sbjct: 120 IQKVREAEREVIVNDYSSRIGEVIMVTVKRVDRGNIYVDMGGVDGMIPKFDLIPNESVRK 179 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI +V+ RG Q+ LSR+ + M++LF MEVPEI G++++ SRDPG R+K Sbjct: 180 NDRLRAYIKEVKSSIRGVQIFLSRSVSEMMIELFKMEVPEISAGVIEIMGGSRDPGLRSK 239 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 LAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ Sbjct: 240 LAVRAKDKRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDPAQFVINAMAPAEVSS 299 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +++DE+ +++ V EQL+LAIGR GQN++LAS+LTGW +++++ + + ++ + Sbjct: 300 IIVDENKHSMDIAVEDEQLALAIGRGGQNIKLASRLTGWKLNVMSTIQADEEQVQEMQKI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + + VD +A +L+ EGF V+EL + +IE FD E+Q RA + Sbjct: 360 SDKLADQLGVDSEVAGVLIEEGFDSVDELVDADTQVLGNIEEFDASMVEELQERASDA-- 417 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L + + + SE L S+ G++ + L E I T++DLA S+D+LL Sbjct: 418 ----QLVQALGDAEASEILMSVEGVNEDLASVLIEVDIFTVDDLAELSIDELLDIQ---- 469 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + S+I+ AR GW + Sbjct: 470 -------------DMDIEIASSIIMTARENEGWFD 491 >gi|138894780|ref|YP_001125233.1| transcription elongation factor NusA [Geobacillus thermodenitrificans NG80-2] gi|196247596|ref|ZP_03146298.1| NusA antitermination factor [Geobacillus sp. G11MC16] gi|134266293|gb|ABO66488.1| N utilization substance protein A [Geobacillus thermodenitrificans NG80-2] gi|196212380|gb|EDY07137.1| NusA antitermination factor [Geobacillus sp. G11MC16] Length = 383 Score = 506 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 157/369 (42%), Positives = 236/369 (63%), Gaps = 5/369 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I ++V++ + ++ A + +G ++RV++N +TG I + Sbjct: 2 NTQLLEALADLMREKGISKEVIMEAIEAALVSAYKRNFGQAQNVRVDLNMDTGTIRVLAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KDVVEEVTDPRLEISLEEAQRLNPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R++ V V LG ++ ++ +E + E +P DR+K Y Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAIVDELHGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T + Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPST-----S 356 Query: 366 INVDEIIAH 374 ++ D + A Sbjct: 357 LDFDGVTAD 365 >gi|238020478|ref|ZP_04600904.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147] gi|237867458|gb|EEP68464.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147] Length = 500 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 193/520 (37%), Positives = 307/520 (59%), Gaps = 28/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 E+L +A+A+A EK++ ++V + ++ AA+ D+ + I+ ETGD R Sbjct: 2 SKEILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTIR 61 Query: 65 LLEVVEEVEN--YTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +VE+++ + +++ ++ P I I G + LP FGR A Q+AKQ+I+Q Sbjct: 62 KWLIVEDLDYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIILQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 ++R+AER++ F + I++GTVKR+E ++V+L D +I R++ + REN R G Sbjct: 122 RIRDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRGG 181 Query: 180 DRVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++ + + G QVLLSRT P F+ +LF EVPEI +G++++K V+RDPG RAK Sbjct: 182 DRIRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV + D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V++ Sbjct: 242 IAVLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSR 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+D+++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E + Sbjct: 302 IVIDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F++ + V E IA LV EGF VEE+A V SE+ +EGFD E A ++ +ARE + Sbjct: 362 RNLFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVVL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + K+ E + E+L ++ G+D + L E I + +DLA S+ +L+ + Sbjct: 422 KAAEEAEAKLNE--IDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEIT---- 475 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G ++ E I+ AR W +E A Sbjct: 476 -------------GVSHEEAEKAILAARAH--WFAEEDNA 500 >gi|56419795|ref|YP_147113.1| transcription elongation factor NusA [Geobacillus kaustophilus HTA426] gi|56379637|dbj|BAD75545.1| transcription termination-antitermination factor [Geobacillus kaustophilus HTA426] Length = 383 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 160/356 (44%), Positives = 231/356 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F Sbjct: 2 NTQLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KDVVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K Y Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSL 357 >gi|78042921|ref|YP_360589.1| transcription elongation factor NusA [Carboxydothermus hydrogenoformans Z-2901] gi|77995036|gb|ABB13935.1| transcription termination factor NusA [Carboxydothermus hydrogenoformans Z-2901] Length = 346 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 154/341 (45%), Positives = 237/341 (69%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E LQ + +K I +V+L ++ A + YG + RV I+ TG++ ++ L Sbjct: 2 NTEFLQAVQEIEKQKGIPAEVLLEATEQALLSAYKKNYGINQNARVHIDRVTGEVKVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ +ISL+ AR++DP +++G V+ + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVKDPRLEISLEEAREKDPRLNLGDVLEIEVTPRNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ Y EF + G+II+G ++RV+ NV VDLG ++ ++ E I EN + GDR+K+Y Sbjct: 122 ERNQIYEEFSSREGDIITGIIRRVDQKNVYVDLGKTEAILPPQEQIPGENYKFGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GP ++LSRTHP + +L +E+PE+Y+G V++K+++R+ GSR+K+AV+S D Sbjct: 182 LVEVKKTSKGPNIILSRTHPGLLKRLLELEIPELYDGTVELKSIAREAGSRSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DP+GACVG +G R++ +V EL EKID+V WSPD A F+ NAL PA VT V + ED Sbjct: 242 ENVDPIGACVGNKGLRIKNIVEELNGEKIDVVKWSPDPAKFIANALSPAKVTSVEVFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|189183523|ref|YP_001937308.1| transcription elongation factor NusA [Orientia tsutsugamushi str. Ikeda] gi|189180294|dbj|BAG40074.1| N utilization substance protein A [Orientia tsutsugamushi str. Ikeda] Length = 500 Score = 504 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 214/488 (43%), Positives = 322/488 (65%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+ E+L++ + +A +K I +D ++S++ + IQ ++ +YG +I+VEIN ++G+ Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKIYGAEHNIKVEINKKSGEC 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q Sbjct: 61 KLYRVLDVVEETEDMYSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARHFIAQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A Sbjct: 181 RVKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTIIIKAVARDPGSRAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS DSSID VG+C+GMRG+R++ + EL E+I+++ WS D A F INA+ P +TKV+ Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISHELAGERINVIKWSQDIAGFAINAMSPVQITKVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE+IV QLS+AIGRRGQNVRL S+L GW IDIITEE++S R +F T Sbjct: 301 IDESRRLIELIVSANQLSIAIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +DE++A LLVAEGF +E++A ++ + SI+ + E +E+Q +A +Y+ Sbjct: 361 LFTKNLGIDEMLAQLLVAEGFISIEQIAHADLNALTSIDKLNSELVLELQQKAIDYVNNQ 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K+ ELGV +EL I + + L ENGIK +EDL + + +N + Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSEFNTLVQNNCLS 480 Query: 481 IEKFDGFL 488 E+F+ + Sbjct: 481 EEEFNYII 488 >gi|261419460|ref|YP_003253142.1| transcription elongation factor NusA [Geobacillus sp. Y412MC61] gi|297530565|ref|YP_003671840.1| transcription termination factor NusA [Geobacillus sp. C56-T3] gi|319766275|ref|YP_004131776.1| NusA antitermination factor [Geobacillus sp. Y412MC52] gi|261375917|gb|ACX78660.1| NusA antitermination factor [Geobacillus sp. Y412MC61] gi|297253817|gb|ADI27263.1| transcription termination factor NusA [Geobacillus sp. C56-T3] gi|317111141|gb|ADU93633.1| NusA antitermination factor [Geobacillus sp. Y412MC52] Length = 383 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 160/356 (44%), Positives = 231/356 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F Sbjct: 2 NTQLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFTR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KDVVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K Y Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSL 357 >gi|118602111|ref|YP_903326.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567050|gb|ABL01855.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 491 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 188/515 (36%), Positives = 293/515 (56%), Gaps = 32/515 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL + +A++ EK+I ++ VL + +++ A + D VEIN +TG+ FR Sbjct: 2 DGKELFLMVEAISNEKNISKEEVLESLEEALAIATKKR--NNIDAYVEINRQTGEFLTFR 59 Query: 65 LLEVVEE----VENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 VV + V++ + L V + + V P+ FGR+A Q KQVI Sbjct: 60 QWMVVADGETFVDDDGTEFDSELHVYAKDASGVAVDDYVRKPIETQKFGRIAAQIVKQVI 119 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 +QKVREAER+ ++ ++GE++ TVKRV+ GNV VD G DG+I + + I E++R Sbjct: 120 VQKVREAEREVIVNDYSSRIGEVVMVTVKRVDRGNVYVDTGGGVDGMIPKFDLIPNESVR 179 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 DR+++YI +V+ RG Q+ LSR+ P+ M++LF MEVPEI G++++ SRDPG R+ Sbjct: 180 KNDRLRAYIKEVKPSVRGAQIFLSRSMPEMMIELFKMEVPEISEGVIEIMGGSRDPGLRS 239 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ Sbjct: 240 KLAVRAKDRRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDHAQFVINAMAPAQVS 299 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++DED +++ V +QL+LAIGR GQN++LAS+LTGW +++++ + + ++ + Sbjct: 300 SIIVDEDKHSMDIAVEDDQLALAIGRGGQNIKLASRLTGWRLNVMSTTQADEKQAQETLK 359 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + + VD +A +L+ EGF V EL + +IE FD E+Q RA + Sbjct: 360 ISDKLADQLGVDSEVAGVLIEEGFGSVGELVDADAQVLENIEEFDASMVEELQERASDA- 418 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 L + + + SE L S+ G+ + AL E I T++DLA S+DDLL Sbjct: 419 -----QLVQALGDAEASELLMSVEGVGEDLASALIEADIVTVDDLAELSIDDLLDIQ--- 470 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + S+I+ AR GW Sbjct: 471 --------------NMDTEIASSVIMIARENEGWF 491 >gi|218782565|ref|YP_002433883.1| transcription elongation factor NusA [Desulfatibacillum alkenivorans AK-01] gi|218763949|gb|ACL06415.1| NusA antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 488 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 196/430 (45%), Positives = 285/430 (66%), Gaps = 5/430 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ ++ D V+ +K ID++V+++ + +++Q AAR G +DI V+ N E G++ +F+ E Sbjct: 5 DIGRVIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFRE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++S++ R+ DP ++G + + FGR+A QSAKQVIIQK+++AER Sbjct: 65 VVEEVTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y F D+ GEII+G ++R++ G++IV+LG ++GV+ E + RE GDR++++I Sbjct: 125 DAVYSSFMDRKGEIINGIMQRMDRGDIIVNLGQTEGVLPSREQVPRETYHRGDRIRAFIL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV E RGPQ++LSRTHP F+ LF MEVPEI G+V V A +R+PG RAK+AV SSDS Sbjct: 185 DVVLEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSDSD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVGM+GSRVQ VV ELR EKIDIV W DSA FV NAL PA +++V++DE+ Sbjct: 245 IDAVGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEENHA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIVP E LS+AIG++GQNVRLAS+LTGW +D+ +E S Q +N M+ Sbjct: 305 MEVIVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKSETRYSRTMQDGYNS----LMELAE 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +DE IA L +GF VEEL+ ++ I+G D A + A+E + + + Q Sbjct: 361 LDENIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEAMASMAMEKQAS 420 Query: 428 I-RELGVSEE 436 +E +E+ Sbjct: 421 APQEAEAAED 430 >gi|295399850|ref|ZP_06809831.1| transcription termination factor NusA [Geobacillus thermoglucosidasius C56-YS93] gi|312111638|ref|YP_003989954.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1] gi|294978253|gb|EFG53850.1| transcription termination factor NusA [Geobacillus thermoglucosidasius C56-YS93] gi|311216739|gb|ADP75343.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1] Length = 382 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 230/354 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL + EK I ++VV+ + +I A + +G ++RV++N ETG I +F Sbjct: 2 NTQLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNMETGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + QISL+ A+ DP+ G VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVEEVTDPRLQISLEEAQRIDPNYQSGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R++ V V LG ++G++ E + E +P DR+K Y Sbjct: 122 ERSVIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKTEGLLPASEQMPNETYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VIVP QLSLAIG+RGQN RLA++LT W IDI +E E + + + Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESEARELGIDPYAQSS 355 >gi|148284846|ref|YP_001248936.1| transcription elongation factor NusA [Orientia tsutsugamushi str. Boryong] gi|146740285|emb|CAM80660.1| N utilization substance protein A, transcription termination factor [Orientia tsutsugamushi str. Boryong] Length = 500 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 210/488 (43%), Positives = 319/488 (65%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+ E+L++ + +A +K I +D ++S++ + IQ ++ YG +I+VEIN ++G+ Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKKYGAEHNIKVEINKKSGEC 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q Sbjct: 61 KLYRVLDVVEETEDMCSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARYFIAQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A Sbjct: 181 RIKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTISIKAVARDPGSRAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS DSSID VG+C+GMRG+R++ + EL E+I+++ W+ D A F INA+ P +TKV+ Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISNELSGERINVIKWNQDIAGFAINAMSPVQITKVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE+IV QLS++IGRRGQNVRL S+L GW IDIITEE++S R +F T Sbjct: 301 IDESRHLIELIVSANQLSISIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +DE++A LLVAEG +E++A ++ + SI+ + E +E+Q +A +Y+ Sbjct: 361 LFTKNLGIDEMLAQLLVAEGLISIEQIAHADLNVLTSIDRLNSELVLELQQKAIDYVNNQ 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K+ ELGV +EL I + + L ENGIK +EDL + + N + Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSEFNTLVPNNCLS 480 Query: 481 IEKFDGFL 488 E+F+ + Sbjct: 481 EEEFNYII 488 >gi|121535260|ref|ZP_01667074.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306145|gb|EAX47073.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1] Length = 348 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 150/341 (43%), Positives = 231/341 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q + + EK I +++ + ++ A + +G+ ++RV ++ TG+I ++ Sbjct: 3 NAEFMQAFEQLGKEKGIAPEILFDAIEAALISAYKRNFGSAQNVRVSLDRTTGEIHVYAR 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V++ ++SL+ AR D ++ VV + P DFGR+A Q+AKQV++Q++REA Sbjct: 63 KTVVEVVKDPRLEMSLEEARAIDVRYELDDVVEIEVTPKDFGRIAAQTAKQVVVQRIREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ +I++G V+R+E NV +DLG ++ ++ E I E + GDR+K+Y Sbjct: 123 ERGIIYEEFSNRESDIVTGIVQRIEQKNVYIDLGKAEAILTPSEQIPGEVYKHGDRLKTY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K+AV S D Sbjct: 183 IIEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREPGMRSKIAVHSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGACVG +G RVQ +V ELR EKIDIV WS D A F+ NAL PA V V ++E Sbjct: 243 ENVDAVGACVGHKGMRVQTIVNELRGEKIDIVKWSSDPAKFIANALSPAKVISVEVNETE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 303 KVSKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 343 >gi|239826654|ref|YP_002949278.1| transcription elongation factor NusA [Geobacillus sp. WCH70] gi|239806947|gb|ACS24012.1| NusA antitermination factor [Geobacillus sp. WCH70] Length = 382 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 160/366 (43%), Positives = 234/366 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL + EK I ++VV+ + +I A + +G ++RV++N ETG I +F Sbjct: 2 NTQLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNTETGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A+ +P+ IG V+ + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVDEVNDPRLEISLEEAQRINPNYQIGDVLELEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+RV+ V V LG ++ ++ E + E +P DR+K Y Sbjct: 122 ERSVIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKTEALLPASEQMPNETYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LT W IDI +E E + + T + Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESEARELGIDPYAQSTFLDSEE 361 Query: 366 INVDEI 371 +V+ Sbjct: 362 TSVNNE 367 >gi|222475232|ref|YP_002563648.1| transcription termination factor nusA (nusA) [Anaplasma marginale str. Florida] gi|255003215|ref|ZP_05278179.1| transcription elongation factor NusA [Anaplasma marginale str. Puerto Rico] gi|255004343|ref|ZP_05279144.1| transcription elongation factor NusA [Anaplasma marginale str. Virginia] gi|222419369|gb|ACM49392.1| transcription termination factor nusA (nusA) [Anaplasma marginale str. Florida] Length = 515 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 213/527 (40%), Positives = 339/527 (64%), Gaps = 30/527 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG + Sbjct: 4 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVV 62 Query: 61 SLFRLLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDF 106 S+ R VV + ++ + + + A + +G ++ +PLPP+D Sbjct: 63 SISRQALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDV 122 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + Sbjct: 123 DYNSAKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLP 182 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 TI E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV Sbjct: 183 VYNTIRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVS 242 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A Sbjct: 243 IKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAK 302 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 FV++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E Sbjct: 303 FVVSAIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDE 362 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE Sbjct: 363 TESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEI 422 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A Sbjct: 423 AVELKKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASM 482 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ + K+QV+S+I+ +R +MGWI Sbjct: 483 CTDEFYDM--------------VPKARLSKEQVDSIILESRKRMGWI 515 >gi|229544433|ref|ZP_04433491.1| NusA antitermination factor [Bacillus coagulans 36D1] gi|229324918|gb|EEN90595.1| NusA antitermination factor [Bacillus coagulans 36D1] Length = 399 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 168/403 (41%), Positives = 242/403 (60%), Gaps = 13/403 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + EK I RDV++ + ++ A R + ++R ++N G I +F + Sbjct: 4 ELVDALTILEKEKGISRDVLVEAIEAALVSAYRRNFNQAQNVRTDLNLANGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A+ +PS +IG VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDPRLEISLEDAQKINPSYEIGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ E+++G V+R + V LG ++ ++ E E P DR+K YI Sbjct: 124 GIIYNQFIDREDEVMTGIVQRKDPRFTYVSLGKTEALLPPGEQSPNETYNPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +GPQ+ +SRTHP + +LF +EVPEIY+GIV++++++R+ G R+K++V++ Sbjct: 184 KVERTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGIVEIRSIAREAGDRSKISVYTDRPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL EKIDIV WS D A FV NAL PA V V++DE+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELHGEKIDIVKWSDDPAKFVANALSPAKVLDVLVDENNKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE---EDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E I + + N+ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARESGIYPRSETNDDIDGETP 363 Query: 365 AINVDEIIAHLLVAEGFADVEELA--CVKISEIASIEGFDEET 405 + D+ G E LA K +++ G DEE Sbjct: 364 GLFDDD-------DAGRTS-EALAVPDAKEADLPENGGKDEEI 398 >gi|301063436|ref|ZP_07203968.1| transcription termination factor NusA [delta proteobacterium NaphS2] gi|300442375|gb|EFK06608.1| transcription termination factor NusA [delta proteobacterium NaphS2] Length = 474 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 192/429 (44%), Positives = 275/429 (64%), Gaps = 4/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L ++ D V+ EK +D+ V++ + ++++ AAR YG D+ V N E G++ F E Sbjct: 4 DLRKVIDQVSREKGVDQAVLIGALEEAVKAAARKKYGNEYDLEVIYNEEMGEVEAFEFKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE EN QISLK A + DP +IG + + P FGR+A QSAKQVI+Q+++EAER Sbjct: 64 VVEETENPNLQISLKEALELDPETEIGDSLGIKMDPDTFGRIAAQSAKQVIMQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y +F D+ GEI++G V+R + G++IV+LG ++ + E I RE+ + GDRV++YI Sbjct: 124 DIVYDDFIDRRGEIVNGIVQRFDRGSIIVNLGRAEAELPHKEQIPRESYKQGDRVRAYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVR+ RGPQ++LSRTHP + LF EVPEI GIVQ+ V+R+PG RAK+AV S D Sbjct: 184 DVRKISRGPQIILSRTHPNIVAILFENEVPEISEGIVQIIQVAREPGGRAKIAVSSKDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G RVQAVV ELR EKIDIV W PDSA F+ NAL PA +T+V++DED Sbjct: 244 VDPVGACVGMKGRRVQAVVQELRGEKIDIVTWDPDSAKFICNALAPAEITRVIVDEDNHS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QLSLAIG+RGQNVRLA++LTGW +D++ E + + + F + + Sbjct: 304 MEVVVPDDQLSLAIGKRGQNVRLAAKLTGWRLDVVGETKYNETLKDGF----RSLLDLNG 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E IA L F ++A + ++ ++G +E A + A YL ++ Sbjct: 360 VGEKIATELYDADFRSARDIAGSTVEDLMVVKGISQEKAEALIAEANAYLLAKSQETKED 419 Query: 428 IRELGVSEE 436 ++ Sbjct: 420 APGETDPDD 428 >gi|56416867|ref|YP_153941.1| transcription elongation factor NusA [Anaplasma marginale str. St. Maries] gi|56388099|gb|AAV86686.1| transcription termination factor A [Anaplasma marginale str. St. Maries] Length = 515 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 212/527 (40%), Positives = 339/527 (64%), Gaps = 30/527 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG + Sbjct: 4 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVV 62 Query: 61 SLFRLLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDF 106 S+ R VV + ++ + + + A + +G ++ +PLPP+D Sbjct: 63 SISRQALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDV 122 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + Sbjct: 123 DYNSAKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLP 182 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 TI E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV Sbjct: 183 VYNTIRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVS 242 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A Sbjct: 243 IKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAK 302 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 FV++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E Sbjct: 303 FVVSAIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDE 362 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE Sbjct: 363 TESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEI 422 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A Sbjct: 423 AVELKKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASM 482 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ + K+QV+S+I+ +R ++GWI Sbjct: 483 CTDEFYDM--------------VPKARLSKEQVDSIILESRKRVGWI 515 >gi|57239198|ref|YP_180334.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Welgevonden] gi|58579156|ref|YP_197368.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Welgevonden] gi|58617209|ref|YP_196408.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Gardel] gi|57161277|emb|CAH58198.1| putative N utilization substance protein A [Ehrlichia ruminantium str. Welgevonden] gi|58416821|emb|CAI27934.1| Transcription elongation protein nusA [Ehrlichia ruminantium str. Gardel] gi|58417782|emb|CAI26986.1| Transcription elongation protein nusA [Ehrlichia ruminantium str. Welgevonden] Length = 517 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 211/527 (40%), Positives = 338/527 (64%), Gaps = 32/527 (6%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + + LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG IS Sbjct: 6 NFDNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYGNCK-IKVTVDKKTGLIST 64 Query: 63 FRLLEVVEE-----------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD 105 +R + V+ + N I+L A+ D + +G ++ +PLP +D Sbjct: 65 YRQVLVISDNGEVVIPEGKENEIDHADVNKYKLITLTEAKQIDENAKLGDIMLEPLPVID 124 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI 165 + + AKQ I Q + ER +QY FKD++G+I+ GT KR+EY NVIVDL ++G + Sbjct: 125 LDYSSAKIAKQKIAQVIVSEERKKQYESFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYL 184 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV Sbjct: 185 SASNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRVNKGFMEQLFKQEIPEIYDGIVT 244 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID+V++SP+ Sbjct: 245 IKAIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIAELHGEKIDVVLYSPELPK 304 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 F++NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L W ID+I +E Sbjct: 305 FIVNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVNWKIDVIGDE 364 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 +S + K+ ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE Sbjct: 365 TESTRKAKELTVGSRIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEI 424 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 A+E++ RA +YL D +++ + L + +++ +P + +AL E+GI +ED+AG Sbjct: 425 AIELKNRASDYLTRKDAEIKQILESLPIDKDVAVLPFLKPSDIIALSESGINNLEDIAGL 484 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + ++ KDQ++S+I+ +R K+GW+ Sbjct: 485 CTDE--------------FYEIVPNVALTKDQIDSIILESRRKIGWL 517 >gi|269958718|ref|YP_003328505.1| transcription elongation factor [Anaplasma centrale str. Israel] gi|269848547|gb|ACZ49191.1| transcription elongation factor [Anaplasma centrale str. Israel] Length = 524 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 216/527 (40%), Positives = 339/527 (64%), Gaps = 30/527 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG I Sbjct: 13 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVI 71 Query: 61 SLFRLLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDF 106 S+ R VV + ++ + I + A + +G ++ +PLPP+D Sbjct: 72 SISRQALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKDVKVGDILLEPLPPVDV 131 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + Sbjct: 132 DYNSAKVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLP 191 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 TI E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV Sbjct: 192 VYNTIRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVS 251 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A Sbjct: 252 IKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAK 311 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 FV++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E Sbjct: 312 FVVSAIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDE 371 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE Sbjct: 372 TESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEI 431 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI+ +ED+A Sbjct: 432 AVELKKRAAEYLVRRREEALEILKSMSVSEEVLELPYLEIEDVVKLCEGGIRNVEDIASM 491 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + K+QV+S+I+ +R +MGW+ Sbjct: 492 CTDE--------------FYDTVPKARLSKEQVDSIILESRRRMGWV 524 >gi|332999998|gb|EGK19581.1| transcription elongation protein nusA [Shigella flexneri K-218] Length = 407 Score = 499 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 177/424 (41%), Positives = 266/424 (62%), Gaps = 19/424 (4%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G V D + + F R+ Q+AKQVI+QKVREAER +F++ GEII+G VK+V Sbjct: 1 MGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 60 Query: 153 NVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 N+ +DLGN ++ VI R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++L Sbjct: 61 NISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 120 Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 F +EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL Sbjct: 121 FRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGG 180 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 E+IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLA Sbjct: 181 ERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLA 240 Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 SQL+GW ++++T ++ Q + + F + +++DE A +LV EGF+ +EELA V Sbjct: 241 SQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVP 300 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451 + E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L Sbjct: 301 MKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKL 360 Query: 452 GENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 G+ T+EDLA +DDL G ++ ++I+ AR + W Sbjct: 361 AARGVCTLEDLAEQGIDDLADIE-----------------GLTDEKAGALIMAAR-NICW 402 Query: 512 IEKE 515 E Sbjct: 403 FGDE 406 >gi|332976700|gb|EGK13538.1| N utilization substance A [Psychrobacter sp. 1501(2011)] Length = 495 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 184/515 (35%), Positives = 297/515 (57%), Gaps = 30/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + +++ + + T +RVEI+ +TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + IG + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER F+ ++GE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V R+ RG Q+LLSRT P ++ L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLIALMNKEVPEISEQIIEIRDVARQPGVRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + + Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR W +E Sbjct: 474 -----------GLDEKTAGELIMKARES--WFNEE 495 >gi|93004904|ref|YP_579341.1| transcription elongation factor NusA [Psychrobacter cryohalolentis K5] gi|92392582|gb|ABE73857.1| NusA antitermination factor [Psychrobacter cryohalolentis K5] Length = 494 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 187/514 (36%), Positives = 293/514 (57%), Gaps = 30/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + D++ + + T ++RV I+ TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRTTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ IG + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAITDLDQ--EEWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER+ F+ +VGE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE + + + Sbjct: 302 DEDTQTADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEEYQQRQANESKAFIE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + VD+ +A LV GF +EE+A V + IEG D+E IQ RA+E + Sbjct: 362 LFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDEAIDMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL + G+ + + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + +I+ AR W + Sbjct: 474 -----------DLDTETAGKLIMKARES--WFNE 494 >gi|255658253|ref|ZP_05403662.1| transcription termination factor NusA [Mitsuokella multacida DSM 20544] gi|260849564|gb|EEX69571.1| transcription termination factor NusA [Mitsuokella multacida DSM 20544] Length = 378 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 156/367 (42%), Positives = 235/367 (64%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E L + EK ID +V+ + ++ A + +G+ ++RV ++ ETG ++ Sbjct: 11 NGQEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYA 70 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VVE+ E+ +ISL AR P ++G V+ + P +FGR+A Q+AKQV++Q++RE Sbjct: 71 IKTVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIRE 130 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF + G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+ Sbjct: 131 AERGIIYEEFMSREGDILTGLVERVENHNVYIDLGKTEAVLTPAEQIPTETYAHGDRIKA 190 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V++ +GPQ+++SRTHP + +LF +EVPEI GIV++K+V+R+PG+R+K+AV+S Sbjct: 191 YVVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSK 250 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVG+CVG RG RVQ++V EL EKIDIV WS + A F+ NAL PA V V ++E Sbjct: 251 DENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNET 310 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + Sbjct: 311 EKVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAADEELDANMNEVEVTGD 370 Query: 365 AINVDEI 371 A E+ Sbjct: 371 AAFTAEV 377 >gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 442 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 184/429 (42%), Positives = 284/429 (66%), Gaps = 9/429 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66 +L ++ + V+ +K ID+D++L+ + ++++ AA+ YG +I V + +TG+I +F+ Sbjct: 4 DLRRLIEQVSRDKGIDKDLLLNTVMEAVRSAAKKRYGAKQDNIEVGFSEDTGEIEVFQFK 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVV+EV + QI+L AR DP D+G + L FGR+A QSAKQVIIQ +R+AE Sbjct: 64 EVVDEVIDSDRQITLPEARQLDPECDLGDSLGIKLDAGSFGRIAAQSAKQVIIQGMRDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + ++KD+ GEII+G V+R + +IV+LG ++ ++ E + RE R GDR+++Y+ Sbjct: 124 RDIVFEDYKDRKGEIINGIVQRQDKSGIIVNLGRTEALLPITEQVPRELYRQGDRIRAYV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV+R+ +GPQ++LSR F++ LF EVPEI GIV++ AV+R+PGSR+K+AV S D+ Sbjct: 184 VDVKRQTKGPQIILSRVDENFLIMLFEAEVPEIQEGIVKIMAVAREPGSRSKIAVASRDA 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ +V ELR EKIDI+ W+PD A FV AL PA V+++++DED Sbjct: 244 DVDPVGACVGMKGSRVQNIVQELRGEKIDIIPWNPDPAKFVTQALAPAEVSRIIIDEDSQ 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +E+IVP +QL LAIG+RGQNVRLA++LTGW ID+ +E + S + ++ + ++ Sbjct: 304 NMEIIVPDDQLFLAIGKRGQNVRLAAKLTGWKIDVKSESKYSKSMKEGYLS----LLKIP 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 V E+ A L GF +E+A ++E+ + G +E+ A +I G A + + + Sbjct: 360 GVGEMTASALYEAGFTSAKEVAEANLAELMQVPGINEKKATQILGAA----QTLMKASED 415 Query: 427 KIRELGVSE 435 GV E Sbjct: 416 NPETTGVEE 424 >gi|323701863|ref|ZP_08113533.1| transcription termination factor NusA [Desulfotomaculum nigrificans DSM 574] gi|323533167|gb|EGB23036.1| transcription termination factor NusA [Desulfotomaculum nigrificans DSM 574] Length = 386 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 155/348 (44%), Positives = 236/348 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L+ + EK I DV+L + ++ A + +G++ + RV I+ TGD ++ Sbjct: 2 NSEFLEALKDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRNTGDFKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ AR DP ++G VV + + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RTVVEEVEDDRLEISLEDARKIDPRFNLGDVVENEVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF ++ G+I++G V+R+E NV ++LG ++ ++ E + E RPGDR+K+Y Sbjct: 122 ERNIIFEEFANREGDILTGIVQRIENKNVFIELGKTEAILTPSEQMPGEEYRPGDRLKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SRTHP + +L MEVPE+Y G++++K+++R+ G R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLLEMEVPELYEGVIELKSIAREAGYRSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQ +V+EL EKIDIV W D + FV ++L PA V V + ED Sbjct: 242 ENVDPVGACVGPKGMRVQNIVSELNGEKIDIVKWDQDPSKFVASSLSPAKVVAVEVWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYPE 349 >gi|148651972|ref|YP_001279065.1| transcription elongation factor NusA [Psychrobacter sp. PRwf-1] gi|148571056|gb|ABQ93115.1| NusA antitermination factor [Psychrobacter sp. PRwf-1] Length = 495 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 185/515 (35%), Positives = 297/515 (57%), Gaps = 30/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + +++ + + T +RVEI+ +TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + IG + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER F+ ++GE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V R+ RG Q+LLSRT P +V L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLVALMNKEVPEINEQIIEIRDVARQPGVRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + + Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR W +E Sbjct: 474 -----------GLDEKTAGELIMKARES--WFNEE 495 >gi|304316865|ref|YP_003852010.1| NusA antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778367|gb|ADL68926.1| NusA antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 345 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 154/340 (45%), Positives = 227/340 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + +K I +D + + ++ A + YGT +++V+++ ETGD+ ++ Sbjct: 2 NSEFIEALDQICKDKGIPKDTMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N +ISL+ A+ +G VV + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KTVVENVYNDLFEISLEDAQKLSKKYQVGDVVDIEVTPKSFGRIAAQNAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F K EI++G V+R+E NV+VDLG ++ + +E I E GDR+K Y Sbjct: 122 ERGIVYEDFLSKESEIVTGIVERIERKNVLVDLGKAEATLTPNEQIPNETYNHGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYTKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE Sbjct: 242 ENVDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 302 KIARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSES 341 >gi|71064649|ref|YP_263376.1| transcription elongation factor NusA [Psychrobacter arcticus 273-4] gi|71037634|gb|AAZ17942.1| NusA antitermination factor [Psychrobacter arcticus 273-4] Length = 494 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 186/514 (36%), Positives = 293/514 (57%), Gaps = 30/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + D++ + + T ++RV I+ TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRATGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ IG V + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAITDLDQ--DEWSIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER+ F+ +VGE++ G VK+ I+DLG N++G + RD+ + RE LR R Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I++L PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISSLEPADVSSIIL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE + + + Sbjct: 302 DEDTQSADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEEYQQRQANESKAFIE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + VD+ +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDDAIDMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL + G+ + + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + +I+ AR W + Sbjct: 474 -----------DLDTETAGKLIMKARES--WFNE 494 >gi|296132885|ref|YP_003640132.1| transcription termination factor NusA [Thermincola sp. JR] gi|296031463|gb|ADG82231.1| transcription termination factor NusA [Thermincola potens JR] Length = 535 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 162/364 (44%), Positives = 247/364 (67%), Gaps = 5/364 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + EK I DV+L + ++ A + +G+ ++RV+I+ ETG+I +F Sbjct: 2 NTEFIEALEELEREKGIAIDVLLEALEAALISAYKRNFGSAQNVRVDIDRETGEIKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ +ISL+ A+ RDP ++ +V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 KTVVEKVEDDRLEISLEEAQKRDPRYELSDIVEIEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ G+I++G V+R + NV VDLG ++ ++ E I+ E R GDR+K+Y Sbjct: 122 ERGIIYEEFSNREGDIVTGIVQRQDPKNVYVDLGKTEAILAPSEQIAGEEYRHGDRIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+ G+R+K+AV+S D Sbjct: 182 IVEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQ +V EL+ EKIDIV WSPD A FV NAL PA V V ++E Sbjct: 242 ENVDPVGACVGPKGMRVQTIVNELKGEKIDIVKWSPDPARFVANALSPAKVLDVKVNEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + + F + Sbjct: 302 KIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMA-----EMADNDDLFEEN 356 Query: 366 INVD 369 ++ Sbjct: 357 DDIT 360 >gi|212639524|ref|YP_002316044.1| transcription elongation factor NusA [Anoxybacillus flavithermus WK1] gi|212561004|gb|ACJ34059.1| Transcription elongation factor [Anoxybacillus flavithermus WK1] Length = 367 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 223/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+ +K I ++V++ + +I A + + ++RV+ N ETG I +F Sbjct: 2 NTELLDALTALERDKGISKEVLIEAIEAAIVSAYKRNFNQAQNVRVDFNQETGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL A+ +P+ +G VV + P +FGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVDEVYDSRLEISLDEAKRINPNYQVGDVVEIEVTPKNFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + V LG + ++ E + E +P DR+K Y Sbjct: 122 ERGVIYAEFVDREEDIMTGIVQRTDSKFIYVSLGKIEALLPVSEQMPNETYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIYVSRTHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSSDPVEFVANALSPSKVLDVIVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LT W IDI ++ E Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSQSEAEQ 345 >gi|73667087|ref|YP_303103.1| transcription elongation factor NusA [Ehrlichia canis str. Jake] gi|72394228|gb|AAZ68505.1| Transcription termination factor NusA C-terminal duplication [Ehrlichia canis str. Jake] Length = 517 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 214/527 (40%), Positives = 345/527 (65%), Gaps = 32/527 (6%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + + LEL+++A +A +K ++ D+++ + ++IQ +RS YG I+V ++ +TG +S Sbjct: 6 NFDNLELIRVAKDIADQKGLNLDIIIRAIEEAIQLTSRSKYGNCK-IKVTVDRKTGVVST 64 Query: 63 FRLLEVVEE------VENYTCQI-----------SLKVARDRDPSIDIGGVVSDPLPPMD 105 +R + V+ + EN +I +L A+ D + ++G ++ + LP +D Sbjct: 65 YRQVLVINDNGEIVIPENKKSEIDSSDISKYKLITLTEAKQIDENAEVGDIMLEHLPVID 124 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI 165 + + AKQ I Q + ER +QY +FKD++G+I+ GT KR+EY NVIVDL ++G + Sbjct: 125 LDYSSAKIAKQKIAQVIISEERKKQYEDFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYL 184 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 I E R GDRVK++I DVR+E GPQ+ LSR FM +LF E+PEIY+GIV Sbjct: 185 SAANLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRISKGFMEQLFKQEIPEIYDGIVT 244 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID++++SP+ A Sbjct: 245 IKAIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIYELHGEKIDVILYSPELAK 304 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 F++NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW ID+I +E Sbjct: 305 FIVNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELIGWKIDVIGDE 364 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 +S + K+ +E ++ F++ ++V+EII LL EGF +E++ +S+IA+I+GF+EE Sbjct: 365 TESSRKAKELSEGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDIAAIDGFNEEI 424 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGC 465 A E++ RA +YL D +++ + L V +++ ++P + +AL ENGIK++ED+AG Sbjct: 425 AEELKSRAADYLTRKDAEIKQILDNLSVDKDVTTLPFLKPSDIIALSENGIKSLEDIAGL 484 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ + ++ KDQ++S+I+ +R K+GW+ Sbjct: 485 CTDEFFD--------------IVPNIALTKDQIDSVILESRKKIGWL 517 >gi|302342324|ref|YP_003806853.1| transcription termination factor NusA [Desulfarculus baarsii DSM 2075] gi|301638937|gb|ADK84259.1| transcription termination factor NusA [Desulfarculus baarsii DSM 2075] Length = 436 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 192/429 (44%), Positives = 282/429 (65%), Gaps = 4/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D VA EK +DR++++S + +++Q AAR G+ ++ V N E G++ +F E Sbjct: 3 ELRRMIDHVAREKGLDREILISTLEEAMQSAARRKLGSKVEVDVAYNDEIGEVEVFEFKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE+ + QI + AR DP ++G + + DFGR+A QSAKQVIIQ++++AER Sbjct: 63 VVEELTDPDTQIGFEDARRLDPDCELGDELGIKVETADFGRIAAQSAKQVIIQRMKDAER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + +FKD+ GEII+G V+R + G+++V+LG ++ ++ E + RE RPGDRV++Y+ Sbjct: 123 DIIFEDFKDRKGEIINGIVQRFDKGSIVVNLGRTEAILLAREQVPREGYRPGDRVRAYVL 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV+R RGPQ++LSRTHP F+ LF +EVPEI GIV ++ V+R+ GSR KL V SSD Sbjct: 183 DVKRVSRGPQIILSRTHPGFVEALFELEVPEIAEGIVTIEGVAREAGSRTKLGVSSSDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+GSRVQAVV ELR EKIDI+ + D A +V+NAL PA +++VV+DE Sbjct: 243 VDPVGACVGMKGSRVQAVVQELRGEKIDIIAYDSDPARYVVNALAPAEISRVVVDESNNT 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIV E LSLAIGRRGQNVRLAS+LTGW ID+ +E + S + + + + + + Sbjct: 303 MEVIVADEMLSLAIGRRGQNVRLASKLTGWKIDVKSESKYSESLRDGY----RSLLDVVG 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V +I A L G+A + LA +++A++ G D+E A + AR+Y++ Sbjct: 359 VSDIGADTLFQAGYASADALAYANAADLAALPGIDDERAQRLIDDARDYIQRRRQASDAA 418 Query: 428 IRELGVSEE 436 E Sbjct: 419 RAGGQAQRE 427 >gi|257453568|ref|ZP_05618858.1| transcription elongation factor NusA [Enhydrobacter aerosaccus SK60] gi|257449026|gb|EEV23979.1| transcription elongation factor NusA [Enhydrobacter aerosaccus SK60] Length = 493 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 181/515 (35%), Positives = 290/515 (56%), Gaps = 30/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDI--RVEINPETGDISL 62 E+L + + V+ EK ++ + + + ++ + + Y ++ RV IN +TGD Sbjct: 2 NREILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYSEQPEVAVRVHINRKTGDYDT 61 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV E+ E CQ+++ + IG V + + ++FGR+A AKQVIIQ Sbjct: 62 YRYWTVVADEDHEMPACQLAISDLDEN--EWKIGDVKEEQIESIEFGRIAATQAKQVIIQ 119 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 K+REAER F+ ++GE+I+G VK+ I+DLG N +G + RD+ + RE LR Sbjct: 120 KIREAERSLVADAFEHRIGEMITGEVKKPARDGYIIDLGDNVEGYLPRDKMLPREQLRIK 179 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + + V R+ RG Q++LSRT PQ + L EVPEI I++++ V+R PG RAK+ Sbjct: 180 GRINAILEQVNRDNRGAQLVLSRTSPQMLTALMQKEVPEIAEQIIEIRDVARQPGLRAKI 239 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 +V ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D+ ++I+AL PA V ++ Sbjct: 240 SVKTNDHRIDPVGACIGMRGTRIQAVQQELEGERIDVVVWSDDAVQYIISALEPADVDRI 299 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +LDED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E + ++ + Sbjct: 300 ILDEDTKTADIIFATNDQLARAIGSQGQNVRLASELTGYRLNMMLEDEYNAQQESETKVY 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + VDE +A LV GF +EE+A V I+G D++ IQ RA+E + Sbjct: 360 RDLFYTRLEVDEDLAQALVDIGFTSLEEVAYVPAETFYDIDGLDDDAIDAIQERAKEAVI 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ Q+ I+E S+EL ++ G+ L E + T++DLA ++ D+ Sbjct: 420 ADELVKQQNIKE--PSQELLNLEGMTQAWAYKLAERDVITVDDLAEQAIFDIQDIE---- 473 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + +I+ AR W Sbjct: 474 -------------GLDEKTAGELIMKARES--WFN 493 >gi|295696156|ref|YP_003589394.1| transcription termination factor NusA [Bacillus tusciae DSM 2912] gi|295411758|gb|ADG06250.1| transcription termination factor NusA [Bacillus tusciae DSM 2912] Length = 383 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 157/345 (45%), Positives = 222/345 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ D + EK I +DV++ + ++ + + + +++RV++N ETGD+ +F Sbjct: 2 NQDFIEALDQLEREKGISKDVLIEAIEAALISGYKRNFNSAANVRVDVNRETGDVRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE + +ISL+ A P +G +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVEETADPRMEISLEAAEQISPHYTVGDIVEIEVTPKDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ D+ +I++G V+R + VDLG + ++ E I E L+ GDRVK++ Sbjct: 122 ERGLIYHEYLDREEDIVTGLVQRQDARYTYVDLGKVEALLPFHEQIPGEKLKQGDRVKAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQVLLSRTHP + +LF +EVPEIY G+V++K+V+R+ G R+K+AVFS Sbjct: 182 ITKVEKTTKGPQVLLSRTHPGLLKRLFELEVPEIYEGVVEIKSVAREAGHRSKIAVFSRK 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQ VV EL EK+DIV WS D FV NAL PA V V + ED Sbjct: 242 PEVDPVGACVGPRGMRVQHVVAELHGEKVDIVKWSEDPEEFVKNALSPAKVVSVEIAEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + N Sbjct: 302 RVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAN 346 >gi|134299807|ref|YP_001113303.1| transcription elongation factor NusA [Desulfotomaculum reducens MI-1] gi|134052507|gb|ABO50478.1| NusA antitermination factor [Desulfotomaculum reducens MI-1] Length = 384 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 159/369 (43%), Positives = 241/369 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L+ + EK I DV+L + ++ A + +G++ + RV I+ +TGD ++ Sbjct: 2 NSEFLEALRDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRDTGDYKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ AR DP ++ VV D + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RAVVEEVEDDRVEISLEDARKIDPRFNLEDVVEDEVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF ++ G+I++G V+R+E NV ++LG ++ ++ E I E+ R GDR+K+Y Sbjct: 122 ERNIIFEEFSNREGDILTGIVQRIENKNVFIELGKTEAILTPSEQIPNEDYRHGDRLKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SRTHP + +LF +EVPE+ G+V++K+++R+ G R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLFELEVPELQEGVVELKSIAREAGYRSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RVQ +VTEL EKIDI+ W+ D + +V ++L PA V V + ED Sbjct: 242 ENIDPVGACVGPKGMRVQNIVTELNGEKIDIIKWNQDPSKYVASSLSPAKVVAVEVWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + E F Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMTDIYPEYDAEENDGFSTD 361 Query: 366 INVDEIIAH 374 N E Sbjct: 362 DNYLETFED 370 >gi|323705403|ref|ZP_08116978.1| transcription termination factor NusA [Thermoanaerobacterium xylanolyticum LX-11] gi|323535305|gb|EGB25081.1| transcription termination factor NusA [Thermoanaerobacterium xylanolyticum LX-11] Length = 345 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 151/340 (44%), Positives = 227/340 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + +K I ++ + + ++ A + YGT +++V+++ ETGD+ ++ Sbjct: 2 NTEFIEALEQICKDKGIPKETMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N +ISL+ A+ +G V + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KTVVENVYNDLLEISLEEAQKLSKKYLVGDTVDIEVTPKSFGRIAAQNAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F K EI++G V+R+E NV+VDLG ++ + +E I E + GDR+K Y Sbjct: 122 ERGIVYEDFLSKESEIVTGIVERIEKKNVLVDLGKTEATLTPNEQIPNETYKHGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYAKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE Sbjct: 242 ENVDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 302 KIARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSES 341 >gi|308173623|ref|YP_003920328.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens DSM 7] gi|307606487|emb|CBI42858.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens DSM 7] gi|328553445|gb|AEB23937.1| transcription elongation factor NusA [Bacillus amyloliquefaciens TA208] gi|328911764|gb|AEB63360.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens LL3] Length = 373 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 152/362 (41%), Positives = 233/362 (64%), Gaps = 5/362 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-----NRQKDFNERTQFF 362 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ ++ F Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDIGIFPREHEEDDDLEPLF 363 Query: 363 MQ 364 M+ Sbjct: 364 ME 365 >gi|154686077|ref|YP_001421238.1| transcription elongation factor NusA [Bacillus amyloliquefaciens FZB42] gi|154351928|gb|ABS74007.1| NusA [Bacillus amyloliquefaciens FZB42] Length = 373 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 151/367 (41%), Positives = 231/367 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V++ E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVSEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDLGIYPREHEEDDDLEPLF 363 Query: 368 VDEIIAH 374 ++ A Sbjct: 364 MEPETAE 370 >gi|332976856|gb|EGK13681.1| N utilization substance protein A [Desmospora sp. 8437] Length = 377 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 150/342 (43%), Positives = 223/342 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + EK I ++V++ + ++ + + + ++RV+I+ +TG + +F Sbjct: 2 NAEFIDALNQLEKEKGISKEVLIEAIEAALISGYKRNFHSAQNVRVDIDRDTGRVRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL+ A + +PS ++ +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVEEVTDPRLEISLEAATEINPSFELDDIVEIEVTPADFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + +DLG + ++ ET+ E + DRVK+Y Sbjct: 122 ERSIIYEEFVDREADIVTGVVQRADSRHYYIDLGRVEALLPFAETMPGERFKHNDRVKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQV +SRTHP + +LF +EVPEIY GIV++++V+R+ G R+K+AV S D Sbjct: 182 ITRVEKSTKGPQVFVSRTHPGLLKRLFELEVPEIYEGIVEIRSVAREAGHRSKIAVISRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQ VV ELR EKIDIV WS + FV NAL P+ V +V + E Sbjct: 242 EQVDPVGACVGHRGMRVQTVVNELRGEKIDIVRWSDEPVEFVSNALSPSKVVRVDIREAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E Sbjct: 302 KVAQVVVPDHQLSLAIGKEGQNARLAAKLTGWKIDIKSESES 343 >gi|325290363|ref|YP_004266544.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271] gi|324965764|gb|ADY56543.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271] Length = 429 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 152/342 (44%), Positives = 231/342 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + EK I + + + ++ A + Y ++ ++R +++ TG+I ++ Sbjct: 2 NIEFIEAVGELEKEKGISSEKLFEAIEAALVSAYKKNYSSLQNVRPQVDRNTGEIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ QISL+ A+ DP+ D+ +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KNVVEEVDDSRQQISLEEAKKIDPNYDLNDIVEFEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ ++ G+I++G V+R E NVIVDLG + V+ E I E +P +R+K+Y Sbjct: 122 ERELIYGEYINREGDIVTGVVQRYEQRNVIVDLGKVEAVLPPSEQIPGETYQPFERIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQVLLSRTHP + +LF +EVPEI++G V++KAV+R+ G+R+K+AV+S D Sbjct: 182 VVEVKKTPKGPQVLLSRTHPGLIKRLFELEVPEIHDGFVEIKAVAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +GSRVQ +V EL+ EK+DI+ WS D FV NAL PA V V + Sbjct: 242 ENVDPVGACVGPKGSRVQNIVNELKGEKMDIITWSQDPVEFVSNALSPAKVLGVFPRFED 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + Sbjct: 302 KVTLVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKNETQA 343 >gi|258516334|ref|YP_003192556.1| transcription elongation factor NusA [Desulfotomaculum acetoxidans DSM 771] gi|257780039|gb|ACV63933.1| NusA antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 491 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 147/355 (41%), Positives = 233/355 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L + EK I DV++ + ++ A + +G++ + RV I+ ETGD ++ Sbjct: 2 NTEFLDALRELEREKGIAVDVLIDAIEAALLSAYKRNFGSLQNARVHIDRETGDFKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EEV++ +I+L A+ DP ++G VV + + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RTVTEEVQDDRLEITLADAQKIDPRFELGDVVENEVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y F + +II+G V+R+E N+ ++LG ++ ++ E + E + GDR+K+Y Sbjct: 122 ERNIIYETFSSRESDIITGVVQRIEQKNIYIELGKTEAILTPSEQMPNETYKHGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+ +SRTHP + +LF +EVPE+ GIV++K+V+R+ G+R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQIYVSRTHPGLLKRLFELEVPELEEGIVELKSVAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQ +V EL EKIDI+ W PD++ +V ++L PA V V + ED Sbjct: 242 ENVDPVGACVGPKGARVQNIVNELNGEKIDIIKWDPDASKYVASSLSPAKVVAVEIWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LTG IDI +E + + + + E Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGCKIDIKSESQMAALYPEGYGEAYD 356 >gi|251772259|gb|EES52829.1| transcription termination factor (NusA) [Leptospirillum ferrodiazotrophum] Length = 443 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 178/426 (41%), Positives = 253/426 (59%), Gaps = 14/426 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + D + EK I ++ ++ + +I AA+ YG + +VEI+P TG+I + L Sbjct: 3 NQELLSVIDQLHREKGIPQETLIEALQSAILTAAKKRYGGGDNFQVEIDPRTGEIQVLHL 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE V + ++SL A++ DP ++G + L DFGRVA Q+AKQVI QKVREA Sbjct: 63 RRIVEHVVSPMEEVSLAEAKESDPEAEVGDEIGAYLEIDDFGRVAAQAAKQVIFQKVREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E EF + G +++G E N I+DLG ++ V+ E I RE+ GDRVK+ Sbjct: 123 EWSVVAKEFGGRKGNVVAGVYIGQEKRNFIIDLGKTEAVLPFKEQIPRESFHRGDRVKAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R RGPQ++LSRTHP F+ +LF EVPEI G++++K V RDPG RAK+AV S D Sbjct: 183 LLDIRTTTRGPQLILSRTHPDFLARLFEKEVPEISEGLIEIKGVVRDPGERAKVAVLSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG+CVG++GSRVQA+V E+ EKIDI+ WSPD TF+ AL PA V +V E Sbjct: 243 PNIDPVGSCVGVKGSRVQAIVREIHGEKIDIIDWSPDPGTFIARALSPAKVLRVATRDSE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED------------SINR 351 V+V +QLSL+IGRRGQNVRLA++LTGW IDI +E++ + Sbjct: 303 FDKVATVVVANQQLSLSIGRRGQNVRLAAKLTGWKIDIFSEQQYEADRQARAGGDGAEEE 362 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 D + +A L A G+ VE++A I +IA + +TA ++ Sbjct: 363 HSDAAPLLLGIEDLPGMGGNVADALKAAGYDTVEKIAEANIDDIAILPRLGPKTAAKLVE 422 Query: 412 RAREYL 417 AR++L Sbjct: 423 TARDFL 428 >gi|311030088|ref|ZP_07708178.1| transcription elongation factor NusA [Bacillus sp. m3-13] Length = 374 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 146/342 (42%), Positives = 224/342 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + EK I +DV++ + ++ A + + ++RV++N ETG + +F + Sbjct: 4 ELFDALTLMEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDMNLETGTMRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ AR DP+ VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVFDSRLEISIQEARQIDPNYQENDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K ++ Sbjct: 124 GVIYSEYIEREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNEHYKPHDRIKVFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + Sbjct: 184 KVEKTTKGPQIFVSRSHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHCDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V +V ++E+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSKDPVEFVANALSPSKVLEVQVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAEE 345 >gi|52080267|ref|YP_079058.1| transcription elongation factor NusA [Bacillus licheniformis ATCC 14580] gi|52785644|ref|YP_091473.1| transcription elongation factor NusA [Bacillus licheniformis ATCC 14580] gi|319645953|ref|ZP_08000183.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2] gi|52003478|gb|AAU23420.1| NusA [Bacillus licheniformis ATCC 14580] gi|52348146|gb|AAU40780.1| NusA [Bacillus licheniformis ATCC 14580] gi|317391703|gb|EFV72500.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2] Length = 372 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 147/342 (42%), Positives = 225/342 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N +TG I +F + Sbjct: 4 ELLDALTVLEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRDTGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISIEDAVNINPNYIVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ E + E +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRIDNKFIYVSLGKIEALLPVAEQMPNEVYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 IDPVGACVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARE 345 >gi|313901626|ref|ZP_07835063.1| NusA antitermination factor [Thermaerobacter subterraneus DSM 13965] gi|313468107|gb|EFR63584.1| NusA antitermination factor [Thermaerobacter subterraneus DSM 13965] Length = 473 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 166/351 (47%), Positives = 239/351 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ ETG+I + Sbjct: 2 NAEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRETGEIRVVAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ + QIS+ AR+ DP G VV + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RDVVEEVEDPSTQISVAEAREIDPRYKPGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF + G+I++G V+RV+ NV VDLG ++ V+ E I E RPGDR+K Y Sbjct: 122 ERDLIYEEFIAREGDIVTGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D Sbjct: 182 IVEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG+RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ + Sbjct: 242 ERVDPVGACVGPRGARVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + + ++ + Sbjct: 302 RVARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAAEWLAREDD 352 >gi|147677601|ref|YP_001211816.1| transcription elongation factor NusA [Pelotomaculum thermopropionicum SI] gi|146273698|dbj|BAF59447.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] Length = 360 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 155/352 (44%), Positives = 235/352 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L+ + EK I DV+L + ++ A + +G++ + RV I+ ETG+ ++ Sbjct: 2 NTEFLEALKDLEREKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRETGEFKVYTQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E VE+ +I +K AR +P+ G +V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RTVSEHVEDPRQEIDIKEARAINPNYAPGDIVESEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF ++ G+I++G V+RVE NV ++LG ++ ++ E I E R GDR+K+Y Sbjct: 122 ERNIIYEEFANREGDIVTGIVQRVEQKNVYIELGKTEAILAPSEQIPGEEYRQGDRIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SRTHP + +L MEVPE+ GIV++K ++R+ G+R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLLEMEVPELQEGIVELKGIAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQ +V+EL EKIDI+ W+PD + FV ++L PA V V + E+ Sbjct: 242 ENVDPVGACVGPKGMRVQNIVSELNGEKIDIIKWNPDPSKFVASSLSPAKVIAVEIWEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + +++NE Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQMREIYPEEYNE 353 >gi|88607683|ref|YP_505048.1| transcription elongation factor NusA [Anaplasma phagocytophilum HZ] gi|88598746|gb|ABD44216.1| N utilization substance protein A [Anaplasma phagocytophilum HZ] Length = 514 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 207/526 (39%), Positives = 334/526 (63%), Gaps = 29/526 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA ++ +D V++ + +++ + YG I+V I+ +TG I Sbjct: 4 LYNFDNLELIRVARDVAEQRGLDLGVIVEAIEQALEVVSHVKYGDSK-IKVSIDRKTGVI 62 Query: 61 SLFRLLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDF 106 S+ R + VV++ + + + + A +++G ++ +PLPP+D Sbjct: 63 SVARQVLVVKDDFTFDSEECGIAAEEVNKYKLVRISDALADGEQVEVGDILLEPLPPIDI 122 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY N+IVDL S+G + Sbjct: 123 DYNSAKLAKQKVAQLIMMQERKRQYEEFKDRVGDLVYGVVKRVEYNNIIVDLNGSEGYLP 182 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 TI E RP RVK+++ DVRRE GPQ+ LSR +FM LF E+ E+Y+GIV + Sbjct: 183 VYNTIRGEVFRPNARVKAHVEDVRREATGPQIFLSRVSKRFMELLFKQEISEVYDGIVTI 242 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 KA++RD GSR+K+AV+SSD ++DPVGAC+G RG R+Q +V EL EKID++ +SPD A F Sbjct: 243 KALARDAGSRSKVAVYSSDKNVDPVGACIGARGVRIQNIVAELNGEKIDVIPYSPDLAKF 302 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V++A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW+ID+I +E Sbjct: 303 VVSAIAPAEVVKVIIDEDVEKIELVVPESQVSLAIGRYGQNIRLASELVGWSIDVIGDET 362 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +S + K+ + + F++ ++V+EII LLV+EGF+ +E+L ++ +IA+++GF+EE A Sbjct: 363 ESTRKAKELSSGAKVFVEDLDVEEIIGQLLVSEGFSSIEDLDRAEVGDIAAVDGFNEEIA 422 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E++ RA E L + + + VSEE+ +P + + V L ENG++++ED+A Sbjct: 423 RELKTRAAECLARKRKEAIEMLESMSVSEEVMQLPFLQVEDIVKLSENGVRSVEDIASLC 482 Query: 467 VDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 D+ F + K+QV+S+I+ +R ++GW+ Sbjct: 483 TDE--------------FYDIVPRAKLSKEQVDSVILESRKRVGWV 514 >gi|15614979|ref|NP_243282.1| transcription elongation factor NusA [Bacillus halodurans C-125] gi|20139215|sp|Q9KA74|NUSA_BACHD RecName: Full=Transcription elongation protein nusA gi|10175036|dbj|BAB06135.1| transcriptional terminator [Bacillus halodurans C-125] Length = 382 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 151/369 (40%), Positives = 233/369 (63%), Gaps = 3/369 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK I ++V++ + ++ + + ++RV++N E G I +F Sbjct: 2 NSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R + + VDLG + ++ E + E+ R DR+K+Y Sbjct: 122 ERGIIYADFIDREEDIMTGIVQRQDNRFIYVDLGKVEALLPLSEQMPNESYRHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + + Sbjct: 182 ITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHAEN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +GSRVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 242 PEVDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + Sbjct: 302 KTTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAQELGLLEDEAASH---ET 358 Query: 366 INVDEIIAH 374 + +D+ A Sbjct: 359 LALDQETAD 367 >gi|317129165|ref|YP_004095447.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315474113|gb|ADU30716.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 374 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 152/366 (41%), Positives = 235/366 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + +K ID++++L + ++ + + + ++RV+I+ TG I +F Sbjct: 2 NSEFMDALTTIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRNTGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A++ P D+ VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVEEVFDSRLEISLEAAKNIHPQYDVDDVVEIEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+Y Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPVSEQMPNETYKHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + D Sbjct: 182 ITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAED 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V +V ++E+ Sbjct: 242 PEVDPVGSCVGPKGQRVQTIVNELKGEKIDIVRWSEDPKVYVANALSPSNVVQVTVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG++GQN RLA++LTGW IDI ++ E + N T+ Sbjct: 302 KMTQVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSQSEAEELGLYNSNTDTEQDWTD 361 Query: 366 INVDEI 371 +V+EI Sbjct: 362 EDVEEI 367 >gi|115372730|ref|ZP_01460036.1| NusA protein [Stigmatella aurantiaca DW4/3-1] gi|310823422|ref|YP_003955780.1| transcription termination factor NusA [Stigmatella aurantiaca DW4/3-1] gi|115370211|gb|EAU69140.1| NusA protein [Stigmatella aurantiaca DW4/3-1] gi|309396494|gb|ADO73953.1| Transcription termination factor NusA [Stigmatella aurantiaca DW4/3-1] Length = 565 Score = 489 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 197/498 (39%), Positives = 292/498 (58%), Gaps = 47/498 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + D VA +K I+R V+++ + D+++ AA+ +G ++ + + E G + LF+ + V Sbjct: 11 LNLVLDQVAKDKGIERSVLIATLEDAMKTAAKKHFGQDRNLEAKYDVEKGVVELFQAITV 70 Query: 69 VEEVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMD-------------------- 105 VEE+ + QI++ A + ++ G + + D Sbjct: 71 VEEIVDPVQAVNQITMAEAHKKGMEVEPGDELVFQIMYRDEDAAEAKAQDDQYGDILRLK 130 Query: 106 -----FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 FGR+A Q+AKQVI+Q+ R+AER+ + E+KD+ EI++G +R E GN+IVDLG Sbjct: 131 TFRRGFGRIAAQTAKQVILQRTRDAERENVFNEYKDRKNEIVTGIARRFERGNIIVDLGR 190 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 ++ V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI Sbjct: 191 AEAVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIA 250 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 GIV ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + Sbjct: 251 EGIVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFD 310 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A+FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +D Sbjct: 311 EDPASFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLD 370 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I +E + ++F R+ V+E++ L A GF +++A ++ I G Sbjct: 371 INSES--RVREMREFANRS--LGSLPGVNEMLIETLYAHGFRQAKDVAEASPEVLSQIPG 426 Query: 401 FDEETAVEIQGRAREYL------------EGIDITLQKKIR---ELGVSEELCSIPGIDS 445 D +Q AR+ + E + + R EL SE + + G+ Sbjct: 427 LDPTRLPAMQESARKQMVDDAAELSRMDHEREAARIAEARRHPDELSQSERMARVRGLGE 486 Query: 446 KIKVALGENGIKTMEDLA 463 K AL +G KT+ED+A Sbjct: 487 KTIEALIVSGYKTVEDIA 504 >gi|253573564|ref|ZP_04850907.1| transcription termination factor NusA [Paenibacillus sp. oral taxon 786 str. D14] gi|251847092|gb|EES75097.1| transcription termination factor NusA [Paenibacillus sp. oral taxon 786 str. D14] Length = 365 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 146/364 (40%), Positives = 237/364 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I +D++ + ++ + + + T ++RV++N TG+I ++ Sbjct: 2 SMDFIEALNELEREKGISKDILFEAIEAALISSYKRNFNTAQNVRVDMNRHTGEIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL+ AR+ +P+ + + + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KLVVEEVLDPRTEISLQAAREINPNYHLDDITEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F +K +I++G V+R + N+ VDLG + + +E + E + GDR+K+Y Sbjct: 122 ERGLIYNAFVEKEEDIVTGIVQRQDLRNIYVDLGKVEAHLPLNELMPNEKFKHGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ+LLSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 182 ITKVENTTKGPQILLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DPVG+CVG +G+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E Sbjct: 242 SEVDPVGSCVGPKGTRVQTIVNELRGEKIDIVRYSENVEEYVANALSPSKVLEVQVFEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + ++ ++ + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEEFGREKTDQGEMPQDS 361 Query: 366 INVD 369 I+VD Sbjct: 362 ISVD 365 >gi|227499045|ref|ZP_03929182.1| NusA antitermination factor [Acidaminococcus sp. D21] gi|226904494|gb|EEH90412.1| NusA antitermination factor [Acidaminococcus sp. D21] Length = 359 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 145/341 (42%), Positives = 222/341 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ +A EK I DV+ S + +++ A + +G+ ++RV +N E G+I ++ Sbjct: 2 NADFVRAIAQLAKEKHISPDVLYSAVEEALITAYKKNFGSTQNVRVSMNKENGEIHVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V EVEN +ISL A +P G VV + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KNIVTEVENPLTEISLDEAFKLNPRYQAGDVVEEEVTPKNFGRIAAQNAKQVIVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ D+ +I++GT++R+E N+ VDLG ++G + +E I E R+K Y Sbjct: 122 ERGMVYEKYSDRENDIVTGTIQRIEGRNIFVDLGTAEGTLLPNEQIPGETYEYHQRIKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++ Sbjct: 182 VVEVKKTTKGPQIILSRTHPGLLKRLFELEVAEIQDGTVIIDSVAREPGMRSKIAVHSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+DPVGACVG +G RVQ VV EL EKIDIV +S + +V +AL P+ V D + Sbjct: 242 PSVDPVGACVGPKGMRVQTVVDELGGEKIDIVKYSDNPEEYVASALSPSKVVSAAADAEH 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KICRVVVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342 >gi|284048695|ref|YP_003399034.1| transcription termination factor NusA [Acidaminococcus fermentans DSM 20731] gi|283952916|gb|ADB47719.1| transcription termination factor NusA [Acidaminococcus fermentans DSM 20731] Length = 362 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 147/340 (43%), Positives = 226/340 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ +A EKSI DV+ S + +++ A + YG+ ++RV ++ ETG+I ++ Sbjct: 2 NADFVKAIALLAKEKSISPDVLYSAVEEALITAYKKNYGSAQNVRVSMHKETGEIHVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV + T +ISL+ A+ + G ++ + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KNIVEEVTDPTTEISLEDAQKMNAHYQAGDILETEVTPKNFGRIAAQNAKQVIVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y + D+ +I++GTV+R+E NV +DLG ++G++ +E I E R+K Y Sbjct: 122 ERGMVYERYSDRENDIVTGTVQRIEGRNVFIDLGTAEGLLLPNEQIPHETYDYHQRLKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++ Sbjct: 182 VVEVKKTTKGPQIILSRTHPGLLKRLFELEVSEIQDGTVIIDSVAREPGMRSKIAVHSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+DPVGACVG +G RV+ +V ELR EKIDIV +S D +V NAL P+ V D+D Sbjct: 242 PSVDPVGACVGPKGMRVRTIVDELRGEKIDIVKYSEDPEEYVANALSPSKVVSARADKDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 KICRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 341 >gi|184156669|ref|YP_001845008.1| transcription elongation factor NusA [Acinetobacter baumannii ACICU] gi|332873077|ref|ZP_08441034.1| transcription termination factor NusA [Acinetobacter baumannii 6014059] gi|183208263|gb|ACC55661.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|322506556|gb|ADX02010.1| nusA [Acinetobacter baumannii 1656-2] gi|323516435|gb|ADX90816.1| transcription elongation factor NusA [Acinetobacter baumannii TCDC-AB0715] gi|332738589|gb|EGJ69459.1| transcription termination factor NusA [Acinetobacter baumannii 6014059] Length = 494 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 292/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + ++ +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DP IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 --------------GLGHDKAGQLIMKARES--WFN 494 >gi|169797408|ref|YP_001715201.1| transcription elongation factor NusA [Acinetobacter baumannii AYE] gi|213155778|ref|YP_002317823.1| transcription elongation factor NusA [Acinetobacter baumannii AB0057] gi|215484847|ref|YP_002327084.1| Transcription elongation protein nusA [Acinetobacter baumannii AB307-0294] gi|239500931|ref|ZP_04660241.1| transcription elongation factor NusA [Acinetobacter baumannii AB900] gi|260556300|ref|ZP_05828519.1| transcription termination factor NusA [Acinetobacter baumannii ATCC 19606] gi|301346315|ref|ZP_07227056.1| transcription elongation factor NusA [Acinetobacter baumannii AB056] gi|301513268|ref|ZP_07238505.1| transcription elongation factor NusA [Acinetobacter baumannii AB058] gi|301596448|ref|ZP_07241456.1| transcription elongation factor NusA [Acinetobacter baumannii AB059] gi|332855373|ref|ZP_08435838.1| transcription termination factor NusA [Acinetobacter baumannii 6013150] gi|332867631|ref|ZP_08437763.1| transcription termination factor NusA [Acinetobacter baumannii 6013113] gi|169150335|emb|CAM88232.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter baumannii AYE] gi|193076182|gb|ABO10797.2| transcription termination/antitermination L factor [Acinetobacter baumannii ATCC 17978] gi|213054938|gb|ACJ39840.1| transcription elongation factor NusA [Acinetobacter baumannii AB0057] gi|213986270|gb|ACJ56569.1| Transcription elongation protein nusA [Acinetobacter baumannii AB307-0294] gi|260410355|gb|EEX03654.1| transcription termination factor NusA [Acinetobacter baumannii ATCC 19606] gi|332727505|gb|EGJ58931.1| transcription termination factor NusA [Acinetobacter baumannii 6013150] gi|332733825|gb|EGJ64972.1| transcription termination factor NusA [Acinetobacter baumannii 6013113] Length = 494 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 194/516 (37%), Positives = 292/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + ++ +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DP IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLGHEKAGQLIMKARES--WFN 494 >gi|33519578|ref|NP_878410.1| transcription elongation factor NusA [Candidatus Blochmannia floridanus] gi|33517241|emb|CAD83624.1| transcription pausing; L factor [Candidatus Blochmannia floridanus] Length = 501 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 178/513 (34%), Positives = 301/513 (58%), Gaps = 19/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + + V+ EK++ ++ + + ++ A R Y DIRV I+ ++G IS FR Sbjct: 2 NKEILAVVEVVSNEKAVPKEKIFLALEMALAAATRKKYSQDIDIRVSIDRKSGKISTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +V T +++L+ A+ + I I V D + + F R+ Q+AKQVIIQK+REA Sbjct: 62 WVVVNQVIQPTREMTLEAAQLENLEIKINDYVEDIVESVTFDRITTQTAKQVIIQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKS 184 ER +F + GEI++G +K++ +V VDLGN ++G+I+R+E + REN R GDR++ Sbjct: 122 ERMIIIEQFLSRQGEIVTGIIKKISRYSVSVDLGNNAEGIIKREEMLPRENFRVGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ + +G + +SRT + +++LF +EVPEI ++ ++A +RDPGSR+K+AV ++ Sbjct: 182 ILYLVKTDSKGSNLFISRTCTEMLIELFRIEVPEIGEELITIQAAARDPGSRSKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++D+++W + FV+NA+ PA + +++DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELGGERVDVILWDDNPVQFVVNAMIPADIVSMIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ IGR GQN+RL SQL W ++++T E RQ + FM+ Sbjct: 302 KHTMDIAVEESNLAQIIGRNGQNIRLISQLIDWELNVMTVVELEKKRQSEDRNILDIFMR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT- 423 +N++E A +L+ GF+ +EELA + ISE+ SI FD+E ++ +A++ L+ + Sbjct: 362 VLNINEESAKVLIDSGFSSLEELAYIPISELLSIGVFDKEEIDLLRFKAKDALKDLSNKD 421 Query: 424 -LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + EL + + +I + L GI +EDLA + L G Sbjct: 422 NNDDNSTIMNSVSELLKLSSLKYEIALKLINYGIYKLEDLAEQDIVSLSG---------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + L ++++ +I+ AR + W + Sbjct: 472 -----IKDLNLTEEEIGELIMEAR-NICWFNHD 498 >gi|169634554|ref|YP_001708290.1| transcription elongation factor NusA [Acinetobacter baumannii SDF] gi|169153346|emb|CAP02459.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter baumannii] Length = 494 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 193/516 (37%), Positives = 292/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + ++ +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV ++ E CQ ++ DP IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADDDHEMPACQDAISD---VDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLGHEKAGQLIMKARES--WFN 494 >gi|260550521|ref|ZP_05824731.1| transcription termination/antitermination L factor [Acinetobacter sp. RUH2624] gi|260406436|gb|EEW99918.1| transcription termination/antitermination L factor [Acinetobacter sp. RUH2624] Length = 494 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 293/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-----RVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLDHEKAGQLIMKARES--WFN 494 >gi|311068183|ref|YP_003973106.1| transcription elongation factor NusA [Bacillus atrophaeus 1942] gi|310868700|gb|ADP32175.1| transcription elongation factor NusA [Bacillus atrophaeus 1942] Length = 372 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 151/361 (41%), Positives = 231/361 (63%), Gaps = 4/361 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A DP+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISIDDAHAIDPNYVVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSNDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI----NRQKDFNERTQFFM 363 VIVP QLSLAIG+RGQN RLA++LT W IDI +E + R+ + + F Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIYPRELEEDLDEPLFT 363 Query: 364 Q 364 + Sbjct: 364 E 364 >gi|293610134|ref|ZP_06692435.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827366|gb|EFF85730.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124307|gb|ADY83830.1| nusA; transcription elongation factor NusA [Acinetobacter calcoaceticus PHEA-2] Length = 494 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 194/516 (37%), Positives = 292/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-----RVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DP IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLGHEKAGQLIMKARES--WFN 494 >gi|319649523|ref|ZP_08003679.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2] gi|317398685|gb|EFV79367.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2] Length = 385 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 151/355 (42%), Positives = 227/355 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I RDV++ + ++ A R + ++R+++N G + +F E Sbjct: 4 ELLDALTLLEKEKGISRDVIIEAIEAALVSAYRRNFNQAQNVRIDLNLGNGTMRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVFDPRLEISVEDAQKINPNYQVEDVVEMEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I Sbjct: 124 GIIYSEFIDREEDIMTGIVQRTDPKFIYVSLGKIEAILPANEQMPNERYQPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVAREAGDRSKISVHSDNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WS D FV NAL P+ V V+++ED Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSSDPVVFVANALSPSKVLDVIVNEDDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + +E F Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPRDETLLNF 358 >gi|294670565|ref|ZP_06735444.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307690|gb|EFE48933.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 457 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 187/478 (39%), Positives = 285/478 (59%), Gaps = 30/478 (6%) Query: 47 SDIRVEINPETGDISLFRLLEVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLP 102 D RVEI+ TG+ FR +V E+ + +++ ++ P +I IG + + Sbjct: 1 MDARVEIDRNTGEHRTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQIE 60 Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GN 160 FGR A +AKQ+I+Q++R+AER++ +F +I+ GTVKRVE +IV+L G Sbjct: 61 NEGFGRQAAMTAKQIILQRIRDAEREKVLNDFLATREDIVIGTVKRVERHGIIVELVPGK 120 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPE 218 D +I RD++I REN R GDR+++ V + QV+LSRT +F+ KLF EVPE Sbjct: 121 LDALIPRDQSIPRENFRSGDRIRALFLRVEEIGQSGRKQVILSRTSREFLAKLFEQEVPE 180 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I +G+++++ +RDPG RAK+AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+ Sbjct: 181 IADGLLEIREAARDPGHRAKIAVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVL 240 Query: 279 WSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 WSPD+A FVINAL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLA+ LTGW Sbjct: 241 WSPDTAQFVINALSPAEVSRIVIDEDHHAVDVIVAEDQLALAIGRGGQNVRLAADLTGWQ 300 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 ++I+T E + F + ++VDE A +LV EGFA +EE+A V E+ I Sbjct: 301 LNIMTITEAEERHAAEDAALRSLFTEHLDVDEETADVLVQEGFASLEEIAYVPSEELEEI 360 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 GFD T ++ RAR+ + + ++K+ E ++E+L ++ GID + L + GI T Sbjct: 361 -GFDAATVDTLRNRARDAILTQAMAQEEKLEE--IAEDLRTLDGIDEDLLRDLAQAGITT 417 Query: 459 MEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + LA S+D+L + + G E +I+ AR W E ++ Sbjct: 418 RDGLAELSIDELREITGVEPGE-----------------AEKIILAARAH--WFETDE 456 >gi|258545583|ref|ZP_05705817.1| N utilization substance A [Cardiobacterium hominis ATCC 15826] gi|258519283|gb|EEV88142.1| N utilization substance A [Cardiobacterium hominis ATCC 15826] Length = 496 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 205/513 (39%), Positives = 301/513 (58%), Gaps = 26/513 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 +LL I +AVA EK +DR V++ + ++ A R Y +V INP TG+ FR Sbjct: 2 SKDLLNIIEAVANEKEVDRSVIIEALEAALAAATRKRYPDEEIGAKVVINPRTGEYKSFR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L VV++ +EN ++ VA P +G V P+ FGR++ Q AKQ+II Sbjct: 62 LWTVVDDEAILENPDAEMRESVAAIEFPEAHLQVGDVHEVPIENEPFGRISAQQAKQIII 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+REAER + Y +F + G ++ G V+R E GNVIVD+ ++ I RD I RE+LR G Sbjct: 122 QKLREAERRKVYDQFIAEEGTLVHGIVRRHERGNVIVDINGAEATILRDGMIPRESLRIG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ Y+ V E RGPQ+ +SR P+ + +LF +EVPEI +GI+++ V+RDPG RAK+ Sbjct: 182 DRIRGYLAKVNLEMRGPQLEVSRVAPEMLKQLFTLEVPEIGSGIIEIMGVARDPGLRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV + D IDPVGACVG+RGSRVQ V+ EL E+IDIV+W D T+V A+ PA +T Sbjct: 242 AVRTFDPRIDPVGACVGIRGSRVQGVMNELAGERIDIVLWDEDPETYVRKAMAPAQITNA 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DE +++ VP+ +L A+GR GQNVRLAS+LTGWTI++++E E ++ + + Sbjct: 302 AADEARRVMDIAVPENKLPQAVGRGGQNVRLASELTGWTINVLSEAEFEARQEAVQDAQE 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q +A++VD+ IA +L+ G+ E +A + E+ IE FDEET + RA +YL Sbjct: 362 QALAEALDVDDEIADILIDAGYTAPEMVAYAERDELLGIEAFDEETVDALMARAADYLLQ 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + E + L ++ GID AL ENG+ T EDLA +VD+L+ ++ Sbjct: 422 QAFVAEVEPEE-EMQLPLENVEGIDEATIAALQENGLHTQEDLAELAVDELVAYT----- 475 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G K+Q ++I+ AR W Sbjct: 476 ------------GLDKEQASALILKAREP--WF 494 >gi|262280758|ref|ZP_06058541.1| transcription termination/antitermination L factor [Acinetobacter calcoaceticus RUH2202] gi|299771783|ref|YP_003733809.1| transcription elongation factor NusA [Acinetobacter sp. DR1] gi|262257658|gb|EEY76393.1| transcription termination/antitermination L factor [Acinetobacter calcoaceticus RUH2202] gi|298701871|gb|ADI92436.1| transcription elongation factor NusA [Acinetobacter sp. DR1] Length = 494 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 294/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-----RVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + RVEI+ +TGD S Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYST 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---LDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRMNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLDHEKAGQLIMKARES--WFN 494 >gi|302389798|ref|YP_003825619.1| transcription termination factor NusA [Thermosediminibacter oceani DSM 16646] gi|302200426|gb|ADL07996.1| transcription termination factor NusA [Thermosediminibacter oceani DSM 16646] Length = 351 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 146/349 (41%), Positives = 239/349 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ D + EK I ++++L + ++ A + YGT ++++ I+ ETG++ ++ Sbjct: 2 NIEFIEALDQIEKEKGISKEILLEAIEAALVSAYKKNYGTSQNVKINIDRETGEVKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E+V++ +ISL A+ +P + IG ++S + P FGR+A Q+AKQV++Q+++EA Sbjct: 62 KTVKEDVKDPLLEISLLDAKKINPLVKIGDIISVEVTPKKFGRIAAQTAKQVVMQRIKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF + ++++G V+R + NVI+DLG ++ ++ +E I E PG+R+K Y Sbjct: 122 ERNIIYEEFAGRETDLVTGVVQRFDKKNVIIDLGKTEVILPPNEQIPNETYTPGERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +++SR+HP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S D Sbjct: 182 ILEVKKTTKGPVIIVSRSHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKVAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQAVV EL+ EKIDI+ WS + ++ NAL PA V V ++ED Sbjct: 242 ENVDPVGACVGPKGTRVQAVVEELKGEKIDIIKWSKNVTEYISNALSPAKVISVDVEEDS 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+V +QLSLAIG+ GQN RLA++LTGW IDI + + DS + + Sbjct: 302 KIARVLVSDQQLSLAIGKEGQNARLAAKLTGWKIDIKSSKTDSRGDENE 350 >gi|294500900|ref|YP_003564600.1| transcription termination factor NusA [Bacillus megaterium QM B1551] gi|295706246|ref|YP_003599321.1| transcription termination factor NusA [Bacillus megaterium DSM 319] gi|294350837|gb|ADE71166.1| transcription termination factor NusA [Bacillus megaterium QM B1551] gi|294803905|gb|ADF40971.1| transcription termination factor NusA [Bacillus megaterium DSM 319] Length = 370 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 154/366 (42%), Positives = 229/366 (62%), Gaps = 1/366 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + EK I +DV++ + ++ A + + ++RV++N E G + +F + Sbjct: 4 ELFDALVILEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDLNLERGSMRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISVEEAQTINPNFQLDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ + E + E +P DR+K YI Sbjct: 124 GVIYSEFSDREEDIMTGIVQRQDSRFIYVSLGKIEALLPQSEQMPNEQYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEKEVPEIYDGTVELKSVAREAGDRSKISVHSEYAE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQAVV EL+ EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQAVVNELKGEKIDIVRWSNDPVEFVANALSPSKVVDVIVDENEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ-AI 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI ++ E N Q A Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSQSEAEQEGMVVKNSDDMLVSQHAF 363 Query: 367 NVDEII 372 + DE + Sbjct: 364 DSDEDM 369 >gi|125973509|ref|YP_001037419.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405] gi|256003327|ref|ZP_05428318.1| NusA antitermination factor [Clostridium thermocellum DSM 2360] gi|281417712|ref|ZP_06248732.1| NusA antitermination factor [Clostridium thermocellum JW20] gi|125713734|gb|ABN52226.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405] gi|255992617|gb|EEU02708.1| NusA antitermination factor [Clostridium thermocellum DSM 2360] gi|281409114|gb|EFB39372.1| NusA antitermination factor [Clostridium thermocellum JW20] gi|316940252|gb|ADU74286.1| NusA antitermination factor [Clostridium thermocellum DSM 1313] Length = 404 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 150/350 (42%), Positives = 237/350 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ + + EK ID+D ++ + ++ A + +G+ +++V I+ ETGD ++ L Sbjct: 2 SADLIHALEQLEKEKGIDKDTLIEAIEAALISAYKRSFGSSQNVKVSIDRETGDFKVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V +N +IS++ A+ +P + +V + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KKVTANPQNELLEISIENAKKINPDFEENDIVEIEVTPRKFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +K GEI++G V+R+E NVI+DLG ++ ++ E I E + DR+K+Y Sbjct: 122 ERGIIYNEFSNKEGEIVTGVVQRIERKNVIIDLGKAEAILAPSEQIPGEEYKFNDRIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SRTHP + +LF +EVPEIY GIV++K+++R+PGSR K+AV+S D Sbjct: 182 IIEVKKTTKGPQILVSRTHPGIIKRLFELEVPEIYEGIVEIKSIAREPGSRTKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQAVV ELR EKIDI+ WS + ++ ++L PA V +V ++E+ Sbjct: 242 ENVDPVGACVGQKGTRVQAVVDELRGEKIDIIKWSSNPEEYISSSLSPAKVIRVDINEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 +V VP QLSLAIG+ GQN RLA++LTGW IDI +E + ++ Sbjct: 302 KSAKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRAAIEQQL 351 >gi|94272101|ref|ZP_01292067.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] gi|93450237|gb|EAT01518.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] Length = 476 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 186/410 (45%), Positives = 270/410 (65%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+ Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EVE+ QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVEDEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++ Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E + + F Q ++ Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSESRYARFIEDGF----QSLLELA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD--EETAVEIQGRAR 414 + E A LL G+ V ELA E+ I+GFD EE + AR Sbjct: 360 GMTEKRAELLAENGYGSVTELAAASAEELQEIDGFDLGEEDTEALLVVAR 409 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 37/189 (19%) Query: 322 GRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF 381 G R QNV +L G IDI+ D + Q + VDE LLV Sbjct: 256 GSRVQNV--VQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVV--VDEESKTLLV---- 307 Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE---ELC 438 V +++ G + A L+ + + + L Sbjct: 308 -------VVPDDQLSLAIGRQGQNV----RLASALLDWRIDVKSESRYARFIEDGFQSLL 356 Query: 439 SIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQV 498 + G+ K L ENG ++ +LA S ++L + ++ Sbjct: 357 ELAGMTEKRAELLAENGYGSVTELAAASAEELQE---------------IDGFDLGEEDT 401 Query: 499 ESMIIHARY 507 E++++ AR Sbjct: 402 EALLVVARL 410 >gi|20807843|ref|NP_623014.1| transcription elongation factor NusA [Thermoanaerobacter tengcongensis MB4] gi|20516405|gb|AAM24618.1| Transcription terminator [Thermoanaerobacter tengcongensis MB4] Length = 346 Score = 484 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 153/341 (44%), Positives = 228/341 (66%), Gaps = 1/341 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I ++ + + ++ A R YGT ++++ ++ ETGD+ ++ Sbjct: 2 NAEFIEALNSICEEKGIPKETMFEAIEAALVSAYRKNYGTAQNVKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV+N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVKNDLLEISLEDARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K Y Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V ++DE Sbjct: 242 PNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 342 >gi|308272453|emb|CBX29057.1| Transcription elongation protein nusA [uncultured Desulfobacterium sp.] Length = 432 Score = 484 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 180/431 (41%), Positives = 279/431 (64%), Gaps = 5/431 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ ++ D V+ ++ ID++V++ + ++++ AAR YG DI ++ N E+GDI F+ + Sbjct: 5 EIKRVVDQVSRDRGIDKNVLIKAIEEALKSAARKKYGNKIDIEIQYNEESGDIEAFQFKK 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + QISL+ + DP +IG + + FGR+A QSAKQVIIQK+++AER Sbjct: 65 VVETVTDSMTQISLEEGQTLDPECEIGDSLGTKMDTTAFGRIAAQSAKQVIIQKMKDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y F ++ GEII+G V+R+E+ G++IV+LG ++G++ +E IS+E + GDR+++ + Sbjct: 125 NAVYSSFIERKGEIINGIVQRIEHSGDIIVNLGQTEGILPINEQISKETYKRGDRIRALL 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V ++ RGPQ++LSRTH F+ LF EVPEI GIV++ R+PG RAK+AV S+DS Sbjct: 185 LEVLQDSRGPQIVLSRTHSNFLANLFKTEVPEISEGIVKIMGAVREPGVRAKIAVSSNDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 I PVGACVGM+GSRVQ VV ELR EKIDI+ W DSA +V NAL PA + +V++DED Sbjct: 245 DIHPVGACVGMKGSRVQNVVQELRGEKIDIIPWHVDSAKYVCNALAPAEIIRVIIDEDNH 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EVIVP E LS+AIG+RGQNVRLAS+LTGW +D+ +E + + ++ Sbjct: 305 AMEVIVPDESLSIAIGKRGQNVRLASKLTGWNLDVQSESHYNEVLKNGYDSLVSL----P 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 V + + L+ +GF V+E++ S++ I+G +E A ++ A E + + + Sbjct: 361 GVGINLVNSLIEKGFTSVDEISNASASDLMQIKGIAKEKAEKLINSATEAISKDEDKVSA 420 Query: 427 KIRELGVSEEL 437 + + + Sbjct: 421 EEENPDIENNV 431 >gi|225677161|ref|ZP_03788159.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590785|gb|EEH12014.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 523 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 202/513 (39%), Positives = 326/513 (63%), Gaps = 16/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V I+ TG ++ +R Sbjct: 21 SLDVIKTAGELSLQKGLDFDVVIKALESAIEAVAYQKYGSKSKIVVNIDRNTGKVTSYRK 80 Query: 66 LEVVEEV----ENYTCQ-ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+V+++ EN + I+L A+ IG VS+ L + + + A+Q I Q Sbjct: 81 LKVIDDESNREENTEYESITLTQAKLIKEDAKIGDTVSELLSL-NTDLASARIAQQKIAQ 139 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD Sbjct: 140 IIKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTKAYLPLRNLTGGESFREGD 199 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+A Sbjct: 200 KVKTYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVA 259 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV+ Sbjct: 260 VFSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVI 319 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 320 IDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSA 379 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAE 439 Query: 421 DITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++++ LG+ +++ ++ ID+KI L ++ IKT+ED+A S + + Sbjct: 440 NDRKIEELKSLGMEDDVINLTLSIDNKIA--LSKHDIKTLEDIADLSSYEFCSILSSSAD 497 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 N + KD V+S+II AR K+G I Sbjct: 498 NKMNSENL-------KDTVDSIIIEARKKLGLI 523 >gi|262197038|ref|YP_003268247.1| NusA antitermination factor [Haliangium ochraceum DSM 14365] gi|262080385|gb|ACY16354.1| NusA antitermination factor [Haliangium ochraceum DSM 14365] Length = 538 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 193/498 (38%), Positives = 288/498 (57%), Gaps = 39/498 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + D V +K+I+RDV++ + +I AA+ +G ++ + N +TG + LF ++ V Sbjct: 5 LNMVIDQVGRDKNIERDVLVQALEQAILTAAKKTFGASRELEAQYNEDTGVVDLFLIVNV 64 Query: 69 VEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPL------------------------- 101 VE+ E+ Y +I+ A +IG + + Sbjct: 65 VEDEEDAIYGREITAPDAETHGLEAEIGDELLFQVFYRAEDNERASEQDAKFGDLIDLKN 124 Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS 161 FGR+A Q+AKQVI Q+VREAERD Y E+KD+ GE+I+G V+R E G+++VDLG + Sbjct: 125 AHKRFGRIAAQTAKQVIYQRVREAERDNVYNEYKDRKGELITGIVRRFERGSIVVDLGRA 184 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 + ++ + + RE+ R GD +K+Y+ D+ R RGPQ++LSRTH + KLF EVPEIY Sbjct: 185 EAILPTRDQVPRESYRVGDSIKAYVLDIDRNARGPQIILSRTHKGLLEKLFEQEVPEIYE 244 Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 IV++++ +R+PG+RAK+AV S D +DPVGACVGM+GSRVQAVV ELR EKIDIV + Sbjct: 245 KIVRIESSAREPGARAKIAVSSRDRDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPYDE 304 Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A FV NA+ PA V++V++D D R+E++VP ++LSLAIG++GQNVRLASQLTGW IDI Sbjct: 305 DPARFVCNAIAPAEVSRVLIDADGHRMELVVPDDKLSLAIGKKGQNVRLASQLTGWRIDI 364 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +E + ++ + +D+ +A + G+ V EL+ E+A + G Sbjct: 365 HSESKIQDLERR----AKEQLAAVEGMDDDLADTVFRLGWRSVGELSRAAPEELAGVPGI 420 Query: 402 DE-ETAVEIQGRAREYLEGIDITLQKKIRE------LGVSEELCSIPGIDSKIKVALG-E 453 D E ++ AR +LE + + RE L E L + + I L E Sbjct: 421 DGVEVGRQVVAGARAFLEEEKLRQEHARREADRRNSLSDRERLLEVRDMSEAIADQLAEE 480 Query: 454 NGIKTMEDLAGCSVDDLL 471 + +EDLA +D L Sbjct: 481 AQVMRVEDLARWPLDRLT 498 >gi|58696914|ref|ZP_00372417.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|58698399|ref|ZP_00373311.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225631019|ref|YP_002727810.1| transcription elongation factor NusA [Wolbachia sp. wRi] gi|13569584|gb|AAK31158.1|AF348330_4 N utilization substance protein A [Wolbachia sp. wRi] gi|58535081|gb|EAL59168.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58536861|gb|EAL60065.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|225593000|gb|ACN96019.1| transcription elongation factor NusA [Wolbachia sp. wRi] Length = 520 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 202/513 (39%), Positives = 328/513 (63%), Gaps = 19/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R Sbjct: 21 SLDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRK 80 Query: 66 LEVVEEV----ENYTCQ-ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+V+++ EN C+ I+L A+ +G VS+ L + + + A+Q I Q Sbjct: 81 LKVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVSELLSL-NTDLASARIAQQTIAQ 139 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD Sbjct: 140 IIKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGD 199 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+A Sbjct: 200 KVKAYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVA 259 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV+ Sbjct: 260 VFSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVI 319 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 320 IDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSA 379 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAE 439 Query: 421 DITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++++ LG+ +++ ++ ID+KI L ++ IKT+ED+A S + + Sbjct: 440 NDRKIEELKSLGMEDDVINLTLSIDNKIA--LSKHDIKTLEDIADLSSYEFCSILSSSSD 497 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + E KD V+S+II AR K+G I Sbjct: 498 SKEDL----------KDIVDSIIIEARKKLGLI 520 >gi|238927232|ref|ZP_04658992.1| transcription elongation factor NusA [Selenomonas flueggei ATCC 43531] gi|238884907|gb|EEQ48545.1| transcription elongation factor NusA [Selenomonas flueggei ATCC 43531] Length = 379 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 158/350 (45%), Positives = 232/350 (66%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F Sbjct: 13 NGKEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFA 72 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV+EVE+ +ISL AR +P +G VV + P +FGR+A Q+AKQV++Q++RE Sbjct: 73 IKTVVDEVESDVTEISLARARAINPDYTVGDVVEIEMTPANFGRIAAQTAKQVVMQRLRE 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y E+ ++ EI++G V+R+E NV VD+G ++ V+ E + E GD V++ Sbjct: 133 AERGIVYEEYMNRSSEIVTGIVQRIEGHNVFVDIGRAEAVLMATEQLPTETYNYGDTVRA 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS Sbjct: 193 YIIEVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSS 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 253 EERVDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEA 312 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D Sbjct: 313 EKISRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAREEEQAD 362 >gi|94263057|ref|ZP_01286876.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] gi|93456600|gb|EAT06708.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] Length = 472 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 185/410 (45%), Positives = 269/410 (65%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+ Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EV + QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVADEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++ Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E + + F Q ++ Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSESRYARFIEDGF----QSLLELA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD--EETAVEIQGRAR 414 + E A LL G+ V ELA E+ I+GFD EE + AR Sbjct: 360 GMTEKRAELLAENGYGSVTELAAASAEELQEIDGFDLGEEDTEALLVVAR 409 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 37/189 (19%) Query: 322 GRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF 381 G R QNV +L G IDI+ D + Q + VDE LLV Sbjct: 256 GSRVQNV--VQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVV--VDEESKTLLV---- 307 Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE---ELC 438 V +++ G + A L+ + + + L Sbjct: 308 -------VVPDDQLSLAIGRQGQNV----RLASALLDWRIDVKSESRYARFIEDGFQSLL 356 Query: 439 SIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQV 498 + G+ K L ENG ++ +LA S ++L + ++ Sbjct: 357 ELAGMTEKRAELLAENGYGSVTELAAASAEELQE---------------IDGFDLGEEDT 401 Query: 499 ESMIIHARY 507 E++++ AR Sbjct: 402 EALLVVARL 410 >gi|262374026|ref|ZP_06067303.1| transcription termination factor NusA [Acinetobacter junii SH205] gi|262311037|gb|EEY92124.1| transcription termination factor NusA [Acinetobacter junii SH205] Length = 494 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 296/516 (57%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYEGTHSEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y V RE RG Q+LLSR+ P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRSRPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ +++DE +A LV GF +EE+A V IE + + +Q RA+E Sbjct: 361 YLDMFVSRLDIDEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LEADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSAELLGMEGMTTEIAYALAARGVITIDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 --------------GLGHDKAGQLIMKARES--WFN 494 >gi|224367580|ref|YP_002601743.1| transcription elongation factor NusA [Desulfobacterium autotrophicum HRM2] gi|223690296|gb|ACN13579.1| NusA [Desulfobacterium autotrophicum HRM2] Length = 482 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 178/433 (41%), Positives = 280/433 (64%), Gaps = 8/433 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ ++ + V+ EK I+ +V++S + ++++ AA+ GT +DI V ++G++ +F+ E Sbjct: 5 DIKRVIEQVSREKGINIEVLISTIKEAVESAAKKKLGTRADIEVHYEEKSGEVEVFQFKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +++LK + DP+ +IG + + +FGR+A QSAKQVIIQK++EAER Sbjct: 65 VVLEVNDPDIELTLKDGQQYDPACEIGDSLGIKVDTSEFGRIAAQSAKQVIIQKMKEAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y F K GEII+G V+R++ GN+IV+LG ++ V+ E + RE+ R GDR+++YI Sbjct: 125 NAVYENFIHKKGEIINGIVQRIDRGNIIVNLGQAEAVLTSREQMPRESYRRGDRIRAYIL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV E RG QV+LSRTHP+F+ KLF EVPEI GIV ++ +R+ G R+K+AV S+DS Sbjct: 185 DVLEEARGSQVILSRTHPEFVAKLFATEVPEIAEGIVTIRGTAREAGVRSKIAVSSTDSD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQ++V ELR EK+DIV W+PD A FV NAL PA + +V++DED Sbjct: 245 VDPVGACVGMKGNRVQSIVQELRGEKVDIVPWNPDVAKFVCNALAPAEIARVIIDEDNRS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIVP + LS+AIG+ GQNVRLA +LTGW +++++E+E S + + M Sbjct: 305 MEVIVPDDFLSIAIGKNGQNVRLACRLTGWHLEVMSEDEYS----SELKQGYDSLMSIPG 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK- 426 V +A L GF+ ++++ ++ S+ E + RA++ LE + + Sbjct: 361 VSLALAEKLFKGGFSSFKDVSLANPGDLISVTDLSESDVEALVLRAKKMLEADHTSQVED 420 Query: 427 ---KIRELGVSEE 436 +++E Sbjct: 421 GDSEVQENEPEAR 433 >gi|304437178|ref|ZP_07397139.1| transcription termination factor NusA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369840|gb|EFM23504.1| transcription termination factor NusA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 379 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 157/348 (45%), Positives = 230/348 (66%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F + Sbjct: 15 KEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFAIK 74 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EVE+ +I L AR +P +G VV + P +FGR+A Q+AKQV++Q++REAE Sbjct: 75 TVVDEVESDVTEIGLAQARAINPDYVVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAE 134 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ ++ EI++G V+RVE NV VD+G ++ V+ E + E GD V++YI Sbjct: 135 RGIVYEEYMNRSSEIVTGIVQRVEGHNVFVDIGRAEAVLMATEQLPNETYNYGDTVRAYI 194 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS+ Sbjct: 195 IEVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSSEE 254 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 255 RVDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEAEK 314 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D Sbjct: 315 ISRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQARETEQAD 362 >gi|190571750|ref|YP_001976108.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019234|ref|ZP_03335041.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190358022|emb|CAQ55491.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995343|gb|EEB55984.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 517 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 195/510 (38%), Positives = 324/510 (63%), Gaps = 16/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L++++ A ++ +K +D +++++ + +I+ A+ YG+ S I V I+ TG ++ +R Sbjct: 21 SLDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQ 80 Query: 66 LEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L+V+ + EN I L A+ +G +S+ + + V+ + A+Q I + ++ Sbjct: 81 LKVINDESNENECDLIKLTQAKLIKEDAKVGDTISELISL-NTDLVSARIAQQKISEIIK 139 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E +QY EFKDKVGE+ G VK+VEY ++I+D+ + I E+ R GD+VK Sbjct: 140 NEELKKQYEEFKDKVGEMRYGIVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVK 199 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V+R G Q++LSRTH F+ L + EVPEI +G++ +K ++RD GSR+K+AVFS Sbjct: 200 AYIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLITIKGIARDAGSRSKIAVFS 259 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD +IDPVGACVG++G R++ ++ EL EKID++ +S D F+I A+ PA V+KV++DE Sbjct: 260 SDRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDE 319 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+F++ + F Sbjct: 320 NENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFA 379 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA YL+ + Sbjct: 380 EALNLEEIMGQLLVTEGFSSVEDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDR 439 Query: 424 LQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ LG+ +++ ++ ID+KI L ++ IKT+ED+A S + + N + Sbjct: 440 KIEELKNLGMEDDVINLALSIDNKIA--LSKHNIKTLEDIADLSNYEFCSILSSSTNNKD 497 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 KD + +II AR K+G I Sbjct: 498 NL----------KDTADLIIIEARKKLGLI 517 >gi|294649082|ref|ZP_06726525.1| transcription elongation factor NusA [Acinetobacter haemolyticus ATCC 19194] gi|292825028|gb|EFF83788.1| transcription elongation factor NusA [Acinetobacter haemolyticus ATCC 19194] Length = 494 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 295/516 (57%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-----RVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPAQWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 --------------GLGHDKAGQLIMKARES--WFN 494 >gi|89098596|ref|ZP_01171478.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911] gi|89086558|gb|EAR65677.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911] Length = 394 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 154/355 (43%), Positives = 229/355 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I RD+++ + ++ A R + ++R+++N +G + +F E Sbjct: 4 ELLDALTLLEKEKGISRDIIIEAIEAALISAYRRNFNQAQNVRIDLNLGSGTMRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + +ISL A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEQVFDPRLEISLDEAKGINPNYQVEDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I Sbjct: 124 GIIYSEFIDREEDIMTGIVQRQDPKFIYVSLGKIEAILPANEQMPNEQYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K++V + +S Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVSREAGDRSKISVHADNSE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WSPD FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSPDPVVFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + E F Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETEARESGIFPREESLLTF 358 >gi|83589895|ref|YP_429904.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073] gi|83572809|gb|ABC19361.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073] Length = 362 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 154/342 (45%), Positives = 234/342 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q + EK I+ D++L + ++ A + +G++ ++RV+I +TG+I + Sbjct: 2 NSEFIQALRDLEREKGINADILLEAIEAALISAYKKNFGSLQNVRVDIQRDTGEIKVLAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ AR + ++G +V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RQVVEEVTDPRQEISLEEARAINSKYELGDIVEKEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + ++++G V+R E N+I+DLG ++ ++ E E R G+R+K Y Sbjct: 122 ERGLIYEEFIGRENDLVTGVVQRQEGKNIILDLGRAEAILLPSEQSPGETYRQGERLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +GPQ+L+SRTHP + +LF +EVPEI++GIV++K V+R+PG+R+K+AV S D Sbjct: 182 VLEVRKTNKGPQILVSRTHPGLIKRLFELEVPEIHDGIVEIKGVAREPGARSKIAVHSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G+RVQAVV ELR EK+DI+ WS D A +V N+L PA V V +DE+ Sbjct: 242 EKVDPVGSCVGPKGARVQAVVQELRGEKVDIIKWSDDPAVYVANSLSPARVLDVTVDEEN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +VIVP QLSLAIG+ GQN RLA+++TGW IDI E E Sbjct: 302 KVSQVIVPDNQLSLAIGKEGQNARLAARITGWKIDIKPESEA 343 >gi|42521112|ref|NP_967027.1| transcription elongation factor NusA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410853|gb|AAS14961.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 520 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 201/513 (39%), Positives = 327/513 (63%), Gaps = 19/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R Sbjct: 21 SLDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRK 80 Query: 66 LEVVEEV----ENYTCQ-ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+V+++ EN C+ I+L A+ +G VS+ L + + + A+Q I Q Sbjct: 81 LKVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVSELLSL-NTDLASARIAQQKIAQ 139 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD Sbjct: 140 VIKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGD 199 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +VK+YI V+ G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+A Sbjct: 200 KVKAYIQTVKHSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVA 259 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV+ Sbjct: 260 VFSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVI 319 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 320 IDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSA 379 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAE 439 Query: 421 DITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++++ LG+ +++ ++ ID+KI L ++ IKT+ED+A S + + Sbjct: 440 NDRKIEELKSLGMEDDVINLTLSIDNKIA--LSKHDIKTLEDIADLSSYEFCSILSSSSD 497 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + E KD V+S+II AR K+G I Sbjct: 498 SKEDL----------KDTVDSIIIEARKKLGLI 520 >gi|255319713|ref|ZP_05360921.1| transcription termination/antitermination, L factor [Acinetobacter radioresistens SK82] gi|262380005|ref|ZP_06073160.1| transcription termination factor NusA [Acinetobacter radioresistens SH164] gi|255303242|gb|EET82451.1| transcription termination/antitermination, L factor [Acinetobacter radioresistens SK82] gi|262298199|gb|EEY86113.1| transcription termination factor NusA [Acinetobacter radioresistens SH164] Length = 494 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 191/516 (37%), Positives = 293/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTTAEEARLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR EVV E+ E CQ ++ DP IG + + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWEVVADEDHEMPACQDAISD---VDPAKWSIGDIRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I++E LRP Sbjct: 121 QKIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ E+E +Q + + Sbjct: 301 IVLDEDTHSADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEDEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEVAYVPAETFDEIE-LDTELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I++ SEEL ++ G+ +I +L G+ T++DLA + DD+ Sbjct: 420 LADALKQQENIQD--PSEELLNMEGMTREIAYSLAARGVVTVDDLADQATDDIADIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +I+ AR W Sbjct: 475 --------------GLDAASAGQLIMKARES--WFN 494 >gi|50083628|ref|YP_045138.1| transcription elongation factor NusA [Acinetobacter sp. ADP1] gi|49529604|emb|CAG67316.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter sp. ADP1] Length = 494 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 188/515 (36%), Positives = 293/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-----RVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + ++ RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR +V E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTLVADEDHEMPACQDAISDV--DASKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I++E LRP Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRMNAILYSVNREGRGAQLLLSRARPEMLMALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDTRSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D+E +Q RA+E Sbjct: 362 LDMFVTRLDIEEDLAMALVEMGFTSLEEIAYVPPETFDEIE-LDQELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ ++E V EL ++ G+ ++ AL G+ T++DLA + DD+ Sbjct: 421 TDALKQQENVQEPSV--ELLAMAGMTQELAYALAARGVVTVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +I+ AR W Sbjct: 475 -------------GLSEEKAGQLIMKARES--WFN 494 >gi|58584795|ref|YP_198368.1| transcription elongation factor NusA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419111|gb|AAW71126.1| Transcription elongation factor, NusA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 520 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 192/512 (37%), Positives = 318/512 (62%), Gaps = 17/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L++++ A ++ +K +D +V++ + +I+ A YG+ S + V I+ TG++ +R Sbjct: 21 NLDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYRE 80 Query: 66 LEVVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+VV++ N I+L A+ +G +++ L + + + A+Q I Q Sbjct: 81 LKVVDDEPNGEEHNGYGSITLTQAKLIKEDAKVGDTINELLSL-NTDLASARIAQQRIAQ 139 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + I E R GD Sbjct: 140 VIKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLIGGELFREGD 199 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 ++K+YI V+R G Q++LSR F+ L E+PEI +G+V VK ++RD GSR+K+A Sbjct: 200 KIKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRSKVA 259 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D +IDPVGACVG++G R++A++ EL EKID+V + D FVI A+ PA V+KV+ Sbjct: 260 VFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVSKVI 319 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE +E+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R ++ ++ + Sbjct: 320 IDESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQCSA 379 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E++ RA YL+ Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYLKAE 439 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++++ LG+ ++ ++P + K+AL E+GIKT+E++A S + + + Sbjct: 440 NDRKIEELKSLGMESDVINLP-LSIDDKIALSEHGIKTLENIADLSSYEFCSILSSSASD 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E K+ V S+I+ AR K+G I Sbjct: 499 KENL----------KNTVNSIIMEARKKLGVI 520 >gi|288556945|ref|YP_003428880.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4] gi|288548105|gb|ADC51988.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4] Length = 378 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 230/368 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK I ++V++ + ++ + + ++RV++N + G I +F Sbjct: 2 NSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFSQAQNVRVDVNRDNGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KTIVEEVFDARLEISLDEAKSINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E + DR+K++ Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALLPLNEQMPNETYKHNDRIKAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + + Sbjct: 182 ITKVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAEN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 242 PEVDPVGSCVGPRGQRVQTIVDELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + + Sbjct: 302 KMTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEARELGLLNEEDSSASEYED 361 Query: 366 INVDEIIA 373 +E Sbjct: 362 PASEEAFV 369 >gi|225181381|ref|ZP_03734825.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225167962|gb|EEG76769.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 396 Score = 481 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 157/364 (43%), Positives = 243/364 (66%), Gaps = 1/364 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L DA+ EK + ++V+ + ++ A + + +++RV++N E+G+I ++ Sbjct: 2 NEEFLAAMDAIEKEKGVKKEVLFEAIEAALVSAYKRNFNAAANVRVQLNRESGEIKVYTR 61 Query: 66 LEVVEEV-ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 LEVVEE + +ISL+ A+ D + G +V + P +FGR+A Q+AKQV+IQ++RE Sbjct: 62 LEVVEEESNDPQLEISLQDAQKIDSRYEPGEIVEKEVTPKNFGRIAAQTAKQVVIQRIRE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER+ + E+ D+ +II+G V+R+E NVI+DLG ++ V+ E + ++ R +RVK+ Sbjct: 122 AEREIVFDEYIDREEDIITGIVQRMEQKNVIMDLGKTEAVLLPTEQMPGDDYRQSERVKA 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V++ +GPQ+ +SRTHP + +LF +EVPEI++G V++K+V+R+ G R+KLAV+S Sbjct: 182 YITEVKKTSKGPQIFVSRTHPGLLKRLFELEVPEIFDGTVEIKSVAREAGYRSKLAVYSK 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG +G+RVQA+VTELR EKIDIV W D FV N+L PA V V L ++ Sbjct: 242 NKDVDPVGACVGPKGARVQAIVTELRGEKIDIVKWDEDPVIFVANSLSPAKVMSVSLHQE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + ER++ F Sbjct: 302 QKVASVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDITSESQAAERQGLPVEERSELFGN 361 Query: 365 AINV 368 +V Sbjct: 362 DEDV 365 >gi|226951828|ref|ZP_03822292.1| transcription elongation factor [Acinetobacter sp. ATCC 27244] gi|226837368|gb|EEH69751.1| transcription elongation factor [Acinetobacter sp. ATCC 27244] Length = 494 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 295/516 (57%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-----RVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DP+ IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPAQWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + E Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQE 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 --------------GLGHDKAGQLIMKARES--WFN 494 >gi|167037624|ref|YP_001665202.1| transcription elongation factor NusA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264912|ref|ZP_07546474.1| transcription termination factor NusA [Thermoanaerobacter wiegelii Rt8.B1] gi|320116039|ref|YP_004186198.1| transcription termination factor NusA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389438|ref|ZP_08211005.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|166856458|gb|ABY94866.1| NusA antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920170|gb|EFN50382.1| transcription termination factor NusA [Thermoanaerobacter wiegelii Rt8.B1] gi|319929130|gb|ADV79815.1| transcription termination factor NusA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994443|gb|EGD52868.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 346 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 155/341 (45%), Positives = 228/341 (66%), Gaps = 1/341 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++ Sbjct: 2 NAEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V RV+ NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTRVDKKNVLINLGRVEAILGPSEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + +LDE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 342 >gi|146329748|ref|YP_001208968.1| transcription termination factor [Dichelobacter nodosus VCS1703A] gi|146233218|gb|ABQ14196.1| transcription termination factor [Dichelobacter nodosus VCS1703A] Length = 495 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 193/513 (37%), Positives = 302/513 (58%), Gaps = 26/513 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFR 64 ELL I +AVA EK +DR+V+ + ++ A R +G + RV I+ ++G+ FR Sbjct: 2 SKELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETFR 61 Query: 65 LLEVVEE---VENYTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++V++ +EN +I VA P D+ G + + + FGR++ Q AKQ+II Sbjct: 62 VWKIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQIII 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+REAER++ Y +F ++ G ++ G V+R E GN IVDLG +G I R++ I RE LR G Sbjct: 122 QKLREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLGGVEGTILRNDMIPREPLRSG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+ Y+ V RE RGPQ+ +SR P+ +++LF EVPEI +G++++ +RDPG RAK+ Sbjct: 182 DRILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 +V + D IDPVGACVG+RGSRVQ VV EL E+IDIV+W D+ T+V A+ PA+++ Sbjct: 242 SVRTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVISDT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++E I++ VP+E+L A+GR GQNVRLAS+LTGWTI++++E E + Q + + Sbjct: 302 CVNEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSAQE 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 Q ++VDE +A L+A G E +A E+ +I+ FD E ++ RA Y+ Sbjct: 362 QSLSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYV-M 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ ++ E + + + G+DS + L GI T EDLA SV++L+ Sbjct: 421 VEAFKEEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNT--- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 +++ ++I+ AR W Sbjct: 478 --------------TQNEAAALILKAREP--WF 494 >gi|108759193|ref|YP_630295.1| transcription termination factor NusA [Myxococcus xanthus DK 1622] gi|108463073|gb|ABF88258.1| transcription termination factor NusA [Myxococcus xanthus DK 1622] Length = 566 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 195/498 (39%), Positives = 287/498 (57%), Gaps = 47/498 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + D VA +K IDR V+++ + D+++ AA+ +G ++ + +P+ G + LF+ + V Sbjct: 12 LNLVLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQAITV 71 Query: 69 VEEVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMD-------------------- 105 VEE+ + QISL A + ++ G + + D Sbjct: 72 VEEIVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDILRLK 131 Query: 106 -----FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 FGR+A Q+AKQVI+Q+ R+AER+ + E++D+ EI++G +R E GN+IVDLG Sbjct: 132 TFRRGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVDLGR 191 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 ++ V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI Sbjct: 192 AEAVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIA 251 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 GIV ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + Sbjct: 252 EGIVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFD 311 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +D Sbjct: 312 EDPARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLD 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I +E + ++F R+ V+E++ L A GF ++A +A + G Sbjct: 372 INSES--RVRELREFANRS--LGSLPGVNEMLVETLYAHGFRQARDIAEANAELLAQLPG 427 Query: 401 FDEETAVEIQGRAR-------EYLEGIDITLQKKI--------RELGVSEELCSIPGIDS 445 D +Q AR L +D ++ EL E + + G+ Sbjct: 428 IDPARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQPERMARVRGVGE 487 Query: 446 KIKVALGENGIKTMEDLA 463 K L G +++ED+A Sbjct: 488 KTIEQLILAGYRSVEDIA 505 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA-CVKISEIASIEGFDEET 405 R D + + + V E L+ G+ VE++A ++++ + G + Sbjct: 464 AEARRHPDELSQPERMARVRGVGEKTIEQLILAGYRSVEDIANEKDLAKLGDVPGVGIKK 523 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELG 432 A +++ A YL + E G Sbjct: 524 ARQLKSAAENYLVEEAKLRAELNAERG 550 >gi|315648098|ref|ZP_07901199.1| NusA antitermination factor [Paenibacillus vortex V453] gi|315276744|gb|EFU40087.1| NusA antitermination factor [Paenibacillus vortex V453] Length = 365 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 145/364 (39%), Positives = 232/364 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F Sbjct: 2 SMDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KLIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+Y Sbjct: 122 ERGLIYSAFIDKEDDIVTGTLQRQDMRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 182 ITKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + ED Sbjct: 242 DEVDPVGSCVGPKGMRVQTIVNELRGEKIDIVRYSEEVEEYVANALSPSKVLEVQVFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQAEQEFGRPKSQSGEMHQDS 361 Query: 366 INVD 369 ++VD Sbjct: 362 VSVD 365 >gi|261407939|ref|YP_003244180.1| NusA antitermination factor [Paenibacillus sp. Y412MC10] gi|329929345|ref|ZP_08283098.1| transcription termination factor NusA [Paenibacillus sp. HGF5] gi|261284402|gb|ACX66373.1| NusA antitermination factor [Paenibacillus sp. Y412MC10] gi|328936714|gb|EGG33157.1| transcription termination factor NusA [Paenibacillus sp. HGF5] Length = 365 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 145/364 (39%), Positives = 231/364 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F Sbjct: 2 SMDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KLIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+Y Sbjct: 122 ERGLIYSAFIDKEDDIVTGTLQRQDLRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 182 ITKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V ELR EKIDIV +S +V NAL P+ V +V + ED Sbjct: 242 DEVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRYSDQVEEYVANALSPSKVLEVQVFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQAEQEFGRPKSQSGEMHQDS 361 Query: 366 INVD 369 ++VD Sbjct: 362 VSVD 365 >gi|219669697|ref|YP_002460132.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2] gi|219539957|gb|ACL21696.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 493 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 158/436 (36%), Positives = 255/436 (58%), Gaps = 11/436 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F Sbjct: 2 NMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ Q+S++ A+ DP+ I VV + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KNVVEEVEDSRTQVSMEEAQKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K++ Sbjct: 122 ERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D Sbjct: 182 VVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V + Sbjct: 242 ANVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Q + Sbjct: 302 KVALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEE 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA------VEIQGRAREYLEG 419 + A E + + E+ + + E +DE E+ + E Sbjct: 362 YD---EFADYAEYENYDEYED--YSEYDDYEENEDYDENATYGENYDDELVYDENDQYEE 416 Query: 420 IDITLQKKIRELGVSE 435 D +++ + Sbjct: 417 FDAYQNEELPYEESED 432 >gi|297569836|ref|YP_003691180.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus AHT2] gi|296925751|gb|ADH86561.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus AHT2] Length = 449 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 187/407 (45%), Positives = 270/407 (66%), Gaps = 5/407 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D ++ +K I+RD+++ + +++ AA+ YG +I N E G+I LF+ Sbjct: 4 ELKRIIDQISRDKGINRDLLIEAIEEAVMSAAKKKYGHRREIEARYNDEYGEIELFQFRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +ISL A++ DP +++G + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVTDEQTEISLAEAKELDPEVEMGDELGSKMDSAADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y FK++ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVYDLFKERKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F+ KLF MEVPEI GIV+V V+R+PGSRAK+AV S++S Sbjct: 184 LDVRQSSKEPQLVLSRTCNEFLTKLFTMEVPEIAEGIVKVMGVAREPGSRAKIAVSSTES 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A +V NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARYVSNALAPAQVSMVVVDEENN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L GW ID+ +E S + ++ F Q + Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLGWRIDVKSETRYSRSIEEGF----QSLLDVA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + E A L G + ELA +E+A+ G +E A + A Sbjct: 360 GISEKQAEKLYDGGISSAAELAAADPAEVATTLGLEEPEAQALVSAA 406 >gi|89895266|ref|YP_518753.1| hypothetical protein DSY2520 [Desulfitobacterium hafniense Y51] gi|89334714|dbj|BAE84309.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 493 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 160/436 (36%), Positives = 255/436 (58%), Gaps = 11/436 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F Sbjct: 2 NMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ Q+S++ AR DP+ I VV + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KNVVEEVEDARTQVSMEEARKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K++ Sbjct: 122 ERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D Sbjct: 182 VVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V + Sbjct: 242 SNVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Q + Sbjct: 302 KVALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEE 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA------VEIQGRAREYLEG 419 + A E + + E+ + + E +DE E+ + E Sbjct: 362 YD---EFADYAEYENYDEYED--YSEYDDYEENEDYDENATYGENYDDELVYDENDQYEE 416 Query: 420 IDITLQKKIRELGVSE 435 D +++ + Sbjct: 417 FDAYQNEELPYEESED 432 >gi|332799221|ref|YP_004460720.1| NusA antitermination factor [Tepidanaerobacter sp. Re1] gi|332696956|gb|AEE91413.1| NusA antitermination factor [Tepidanaerobacter sp. Re1] Length = 357 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 146/340 (42%), Positives = 229/340 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + EK I +D++L + S+ A + YG+ ++ V I+ +TG++ +F Sbjct: 2 NIEFIEALAQIEKEKGISKDILLDALEASLISAYKKNYGSSQNVSVSIDRDTGEVKVFSK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +EV++ +I + A +P+ IG V+S + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KVVTDEVKDTLLEIDINEAYTFNPTAKIGDVISIEVTPKKFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ + +I++G V+R + NVI+DLG ++ ++ E IS E G+R+K Y Sbjct: 122 ERDLIFEEYSGRETDIVTGIVQRFDKKNVIIDLGKTEAILPTGEQISSEEYVQGNRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+ +SR+HP + +LF +EVPEIY GIV++K ++R+ GSR K+AV+S + Sbjct: 182 ILEVKKTTKGPQITVSRSHPGLVKRLFELEVPEIYEGIVEIKGIAREAGSRTKIAVYSKN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +GSRVQ++V EL EKIDI+ W D A F+ NAL PA V V+++E+ Sbjct: 242 ENIDPVGACVGPKGSRVQSIVDELNGEKIDIIKWDKDVAEFISNALSPAKVLNVIVEENT 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V + QLSLAIG+ GQN RLA++LTGW IDI +++ Sbjct: 302 KTARVTVSESQLSLAIGKEGQNARLAARLTGWKIDIKSKD 341 >gi|317121853|ref|YP_004101856.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885] gi|315591833|gb|ADU51129.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885] Length = 486 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 166/344 (48%), Positives = 236/344 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ E+G+I + Sbjct: 2 NVEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRESGEIRVVAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV++ + QISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RDVVEEVQDPSTQISLAEAREIDPRYQVGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF + G+II+G V+RV+ NV VDLG ++ V+ E I E RPGDR+K Y Sbjct: 122 ERDLIYEEFIAREGDIITGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D Sbjct: 182 IVEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ + Sbjct: 242 ERVDPVGACVGPRGVRVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + Sbjct: 302 RVARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAQE 345 >gi|167465394|ref|ZP_02330483.1| transcription elongation factor NusA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382349|ref|ZP_08056256.1| transcription elongation factor NusA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153702|gb|EFX46077.1| transcription elongation factor NusA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 365 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 149/364 (40%), Positives = 230/364 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + EK I +D+++ + ++ + + + T ++RV+IN +TG I +F Sbjct: 2 NSEFIEALSEIEREKGISKDLLIDAIEAAMISSYKRNFNTAQNVRVDINRQTGVIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V + +ISL AR+ + + +G +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVEDVLDPRLEISLTAAREINQNYQLGDIVEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F DK +I++G V+R + + VDLG + V+ +E + E + GDRVK+Y Sbjct: 122 ERGLIYNAFIDKEEDIVTGIVQRQDQRSYYVDLGKVEAVLPLNEVMPTEKFKHGDRVKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S + Sbjct: 182 ITKVENTTKGPQIILSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVDSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V ELR EKIDIV W + +V NAL P+ V +V + ED Sbjct: 242 EEVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRWMESTEEYVANALSPSKVLEVNIFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEFGRPRTSTEEMHQDS 361 Query: 366 INVD 369 I++D Sbjct: 362 ISID 365 >gi|297584078|ref|YP_003699858.1| NusA antitermination factor [Bacillus selenitireducens MLS10] gi|297142535|gb|ADH99292.1| NusA antitermination factor [Bacillus selenitireducens MLS10] Length = 396 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 149/373 (39%), Positives = 233/373 (62%), Gaps = 1/373 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + ++ +K ID++++L + ++ + + + ++RV+I+ E+G I +F Sbjct: 2 NSEFMDALASIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRESGQIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +IS + A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KTVVEEVFDARLEISQEEAKGINPHYEVDDIVEIEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E R DR+K++ Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPLNEQMPNETYRHNDRIKAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SR+HP + +LF +EVPEIY+G V+VK+VSR+ G R+K++V + D Sbjct: 182 ITKVEKTTKGPQIMISRSHPGLLKRLFELEVPEIYDGTVEVKSVSREAGERSKISVHAED 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+ Sbjct: 242 EDIDPVGSCVGQRGQRVQTIVDELKGEKIDIVRWSEDPKVYVSNALSPSKVVDVLVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + F Sbjct: 302 KMTTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAEESGIYPVADNDEPF-DD 360 Query: 366 INVDEIIAHLLVA 378 DE + Sbjct: 361 EETDEDLPQSFAE 373 >gi|256750788|ref|ZP_05491673.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|256750371|gb|EEU63390.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1] Length = 346 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 152/341 (44%), Positives = 227/341 (66%), Gaps = 1/341 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++ Sbjct: 2 NTEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++R+A Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIRKA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLSKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + +LDE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIKSES 342 >gi|315282175|ref|ZP_07870640.1| transcription termination factor NusA [Listeria marthii FSL S4-120] gi|313614179|gb|EFR87858.1| transcription termination factor NusA [Listeria marthii FSL S4-120] Length = 372 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSDDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|289578389|ref|YP_003477016.1| transcription termination factor NusA [Thermoanaerobacter italicus Ab9] gi|297544665|ref|YP_003676967.1| transcription termination factor NusA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528102|gb|ADD02454.1| transcription termination factor NusA [Thermoanaerobacter italicus Ab9] gi|296842440|gb|ADH60956.1| transcription termination factor NusA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 346 Score = 479 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 155/341 (45%), Positives = 226/341 (66%), Gaps = 1/341 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++ Sbjct: 2 NTEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+I+G V R + NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLSKETEVITGIVTRADKKNVLINLGRVEAILGPAEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F+INAL PA + +LDE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIINALSPARALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 342 >gi|116748667|ref|YP_845354.1| transcription elongation factor NusA [Syntrophobacter fumaroxidans MPOB] gi|116697731|gb|ABK16919.1| NusA antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 449 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 179/429 (41%), Positives = 264/429 (61%), Gaps = 4/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D V+ EK IDR ++ + ++I+ A + YGT D+ V N E G++ F+ E Sbjct: 4 ELKRLIDQVSREKGIDRQTLIHTLEEAIKSAIKKKYGTRQDLDVTYNEEYGELEAFQFKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A DP +IG + + GR+A QSAKQVIIQK+++AER Sbjct: 64 VVETVTDPDKQVSLAEAIKLDPESEIGDELGIRMDTETLGRIAAQSAKQVIIQKMKDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFK + GEI G V+RV+ ++V++G ++ ++ E I RE R GDRV++Y+ Sbjct: 124 EVVYEEFKSRKGEIAHGVVQRVDKSGIVVNMGQAEAILPPKEQIPREVFRQGDRVRAYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++ +GPQ++LSRTHP F+++LFH EVPEI GIV + + +R+PGSRAK+AV S + Sbjct: 184 DVKKISKGPQIVLSRTHPHFLIQLFHGEVPEIVEGIVSIISAAREPGSRAKIAVISKATD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQ VV ELR EKIDIV W+ D A FV+NAL PAI++KV++D+ Sbjct: 244 VDPVGACVGMKGTRVQNVVQELRGEKIDIVPWNMDPAKFVVNALAPAIISKVIIDQANRS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIVP +QLSLAIG++GQNVRLAS+LT W ID+ E ++ Q ++ Sbjct: 304 MEVIVPDDQLSLAIGKKGQNVRLASRLTNWRIDVKNES----RHERQKQTGYQSMLRING 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 + +A L G ++E SE+ + E++ A + + T + Sbjct: 360 LTAQLADRLYEAGITSLQEFIDASGSELEELTQLAGPVIEEMKAEAGRLVLENETTAEAA 419 Query: 428 IRELGVSEE 436 ++ Sbjct: 420 SEGNETQQD 428 >gi|85860522|ref|YP_462724.1| transcription elongation factor NusA [Syntrophus aciditrophicus SB] gi|85723613|gb|ABC78556.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 420 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 177/419 (42%), Positives = 271/419 (64%), Gaps = 5/419 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ + + ++ +D+ V++ + ++ AAR G DI N E G+I +F+ Sbjct: 4 ELKRLIEQMGKDRGLDKSVIIEALETAMLTAARKKLGAHVDIEAHYNDELGEIEVFQFKT 63 Query: 68 VVEEVENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE+V + QIS++ A RD D + G + + FGR+AVQ+AKQ+I+Q+V++AE Sbjct: 64 VVEKVVDPDMQISIEAAHRDLDEEAEPGDSLGMKIDASTFGRIAVQTAKQIIVQRVKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y E+KD+ GE+++G V+R E G++IV+LG ++GVI E I RE + GDR++SYI Sbjct: 124 RDNVYDEYKDRKGELVNGFVQRFEAGSIIVNLGRAEGVIPVSEQIHREVYKRGDRIRSYI 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ++LSRTHP F+ LF +EVPEI G+++V V+R+PG RAK+AV + D Sbjct: 184 CEVKKVSKGPQIILSRTHPNFLKALFEVEVPEIAEGLIEVLGVAREPGKRAKIAVRTKDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ+VV ELR EKIDI+ +S D + +VI+AL PA V+ V + E+ Sbjct: 244 DIDPVGACVGMRGARVQSVVQELRGEKIDIIPYSEDPSQYVISALSPAKVSHVTVYENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QLSLAIG+ GQNVRLA +LTGW ID+ +E D+ + D+ + ++ Sbjct: 304 AMEVVVPDDQLSLAIGKNGQNVRLAVKLTGWKIDVKSESVDAGSENADY----RTLLKIP 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++E +A L +G V +A +++I G +E TA A ++ D + Sbjct: 360 GMEEAMAERLFNKGLKSVAMVAAADPEMLSAIPGVEERTATLWIEEAGRIIDEEDAASK 418 >gi|16803362|ref|NP_464847.1| transcription elongation factor NusA [Listeria monocytogenes EGD-e] gi|224501735|ref|ZP_03670042.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-561] gi|16410738|emb|CAC99400.1| nusA [Listeria monocytogenes EGD-e] Length = 372 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|310641593|ref|YP_003946351.1| transcription elongation factor-like protein [Paenibacillus polymyxa SC2] gi|309246543|gb|ADO56110.1| Transcription elongation factor-like protein [Paenibacillus polymyxa SC2] Length = 365 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 144/364 (39%), Positives = 231/364 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++ Sbjct: 2 SMDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV + +ISL AR+ +P + V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KLIVEEVLDPRTEISLPAAREINPHFQLEDVAEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+Y Sbjct: 122 ERGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLSELMPNEKFNHLDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S + Sbjct: 182 ITKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+ Sbjct: 242 AEVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEELGRPRTSTDEMHQDS 361 Query: 366 INVD 369 ++VD Sbjct: 362 VSVD 365 >gi|167040285|ref|YP_001663270.1| transcription elongation factor NusA [Thermoanaerobacter sp. X514] gi|300914369|ref|ZP_07131685.1| transcription termination factor NusA [Thermoanaerobacter sp. X561] gi|307724395|ref|YP_003904146.1| transcription termination factor NusA [Thermoanaerobacter sp. X513] gi|166854525|gb|ABY92934.1| NusA antitermination factor [Thermoanaerobacter sp. X514] gi|300889304|gb|EFK84450.1| transcription termination factor NusA [Thermoanaerobacter sp. X561] gi|307581456|gb|ADN54855.1| transcription termination factor NusA [Thermoanaerobacter sp. X513] Length = 346 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 154/341 (45%), Positives = 228/341 (66%), Gaps = 1/341 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++ Sbjct: 2 NAEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + +LDE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 342 >gi|229191985|ref|ZP_04318955.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876] gi|228591536|gb|EEK49385.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876] Length = 368 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 150/379 (39%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + +R F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDRVIAF----- 358 Query: 368 VDEIIAHLLVAEGFADVEE 386 GF VE+ Sbjct: 359 ------------GFDSVED 365 >gi|158523046|ref|YP_001530916.1| transcription elongation factor NusA [Desulfococcus oleovorans Hxd3] gi|158511872|gb|ABW68839.1| NusA antitermination factor [Desulfococcus oleovorans Hxd3] Length = 475 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 182/425 (42%), Positives = 263/425 (61%), Gaps = 4/425 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ ++ + V+ +K IDRD ++ + ++I+ AAR YG DI + +TG+I +F+ E Sbjct: 5 DVKRVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V++ QI+ R DP ++G + + FGR+A QSAKQVIIQK+REAER Sbjct: 65 VVETVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y F +K GEII+G V R+E GNVIV++G ++ ++ E I E R GDRV++ + Sbjct: 125 SAVYKNFVEKEGEIINGIVSRMERGNVIVNIGEAEAILNSREQIPGEGYRRGDRVRANVM 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V E GPQ++LSR HP F+V LF EVPEI GI+ +KA++R+ G R K+AV S+D Sbjct: 185 KVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSNDMD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG+RG+R+Q VV EL+ EKIDIV W+PD A FV NAL PA + +V++DED Sbjct: 245 IDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDNAA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +E+IVP E SLAIGRRGQNVRLAS+LTGW +D+ +E + +Q Sbjct: 305 MEIIVPDESHSLAIGRRGQNVRLASKLTGWHLDVQSES----IYTQAMERGYDTLLQIPG 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VD +A+ L GF ++++ + ++ +EG DE +A + A + E + Sbjct: 361 VDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKALIRDAVKVAEQAAREQAIR 420 Query: 428 IRELG 432 + Sbjct: 421 EKAAK 425 >gi|150390438|ref|YP_001320487.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149950300|gb|ABR48828.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 346 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 148/341 (43%), Positives = 232/341 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LE ++ + + +K I RDV+ + ++ + + +G+ ++RVE+ +TGD+ ++ Sbjct: 2 SLEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVE VE+ +I++ A++ DP+ + +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KKVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ EII+GTV RV GNV ++LG ++ ++ +E I E DR+K+Y Sbjct: 122 ERGIVYEEFINRESEIITGTVSRVAKGNVYINLGKTEAILGPNEQIPNEVYNHADRIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GPQ+ +SRTHP + +LF +EVPEI++G+V+VK++SR+ GSR K+AVFS D Sbjct: 182 IVEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFSID 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +GSRVQ +V EL+ EKIDI+ +S + F+ N+L PA V ++ + Sbjct: 242 ENVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNPED 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KTARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|206972659|ref|ZP_03233600.1| N utilization substance protein A [Bacillus cereus AH1134] gi|218235265|ref|YP_002368617.1| transcription elongation factor NusA [Bacillus cereus B4264] gi|228922570|ref|ZP_04085870.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954092|ref|ZP_04116121.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960032|ref|ZP_04121696.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047502|ref|ZP_04193092.1| Transcription elongation protein nusA [Bacillus cereus AH676] gi|229071314|ref|ZP_04204537.1| Transcription elongation protein nusA [Bacillus cereus F65185] gi|229081071|ref|ZP_04213581.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2] gi|229111287|ref|ZP_04240840.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15] gi|229146387|ref|ZP_04274758.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24] gi|229152015|ref|ZP_04280210.1| Transcription elongation protein nusA [Bacillus cereus m1550] gi|229180092|ref|ZP_04307436.1| Transcription elongation protein nusA [Bacillus cereus 172560W] gi|296504311|ref|YP_003666011.1| transcription elongation factor NusA [Bacillus thuringiensis BMB171] gi|206732416|gb|EDZ49597.1| N utilization substance protein A [Bacillus cereus AH1134] gi|218163222|gb|ACK63214.1| N utilization substance protein A [Bacillus cereus B4264] gi|228603301|gb|EEK60778.1| Transcription elongation protein nusA [Bacillus cereus 172560W] gi|228631364|gb|EEK87998.1| Transcription elongation protein nusA [Bacillus cereus m1550] gi|228637020|gb|EEK93479.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24] gi|228672063|gb|EEL27354.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15] gi|228702115|gb|EEL54591.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2] gi|228711768|gb|EEL63720.1| Transcription elongation protein nusA [Bacillus cereus F65185] gi|228723749|gb|EEL75104.1| Transcription elongation protein nusA [Bacillus cereus AH676] gi|228799548|gb|EEM46501.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805658|gb|EEM52248.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836999|gb|EEM82340.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325363|gb|ADH08291.1| transcription elongation factor NusA [Bacillus thuringiensis BMB171] Length = 368 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 231/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|56963996|ref|YP_175727.1| transcription elongation factor NusA [Bacillus clausii KSM-K16] gi|56910239|dbj|BAD64766.1| transcriptional elongation protein [Bacillus clausii KSM-K16] Length = 368 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 148/344 (43%), Positives = 220/344 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + +K I ++V++ + ++ + +G ++RV++N + G I +F Sbjct: 2 NSEFMEALSTLEADKGIKKEVIIEAIEAALISGYKRNFGQAQNVRVDVNRDNGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +IS A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KVVVEEVFDKRLEISEAEAQRINPHYEVDDIVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+Y Sbjct: 122 ERGIIYSDFIDREEDIMNGIVQRQDHRFIYVDLGKVEALLPLSEQMPNETYKHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV S + Sbjct: 182 ITKVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG RG RVQ +V EL+ EKIDIV WS D +V NAL PA V KV + E Sbjct: 242 PEVDSVGACVGQRGQRVQTIVDELKGEKIDIVEWSEDPVVYVANALSPAKVMKVNVLEGE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 302 KMTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEARE 345 >gi|228966761|ref|ZP_04127805.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar sotto str. T04001] gi|228792860|gb|EEM40418.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar sotto str. T04001] Length = 368 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 153/379 (40%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|251797400|ref|YP_003012131.1| NusA antitermination factor [Paenibacillus sp. JDR-2] gi|247545026|gb|ACT02045.1| NusA antitermination factor [Paenibacillus sp. JDR-2] Length = 365 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 141/364 (38%), Positives = 227/364 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ + +K I ++V+L + ++ + + + ++RV+IN +G I ++ Sbjct: 2 SMDFIEALSEIERDKGIAKEVLLEAIEAALISSYKRNFNAAQNVRVDINRHSGVIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +I++ +R+ +P + + + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVDEVLDPRLEITVDASREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKSY Sbjct: 122 ERGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV+S + Sbjct: 182 ITKVENTTKGPQIILSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVYSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V EL EKIDIV WS +V NAL P+ V +V++ E Sbjct: 242 EEVDPVGSCVGPKGMRVQTIVNELTGEKIDIVRWSESVEEYVANALSPSKVLEVIVFEQE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEYGRPKTTASTMHQDS 361 Query: 366 INVD 369 +++D Sbjct: 362 VSID 365 >gi|299534743|ref|ZP_07048073.1| transcription elongation factor NusA [Lysinibacillus fusiformis ZC1] gi|298729831|gb|EFI70376.1| transcription elongation factor NusA [Lysinibacillus fusiformis ZC1] Length = 379 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 156/371 (42%), Positives = 237/371 (63%), Gaps = 2/371 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E+ P DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGESYHPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++VF+ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVFAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVIFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + T F+ A + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGI--YPSATSTFIPADD 361 Query: 368 VDEIIAHLLVA 378 + + V Sbjct: 362 EESDFDDVAVD 372 >gi|169827165|ref|YP_001697323.1| transcription elongation factor NusA [Lysinibacillus sphaericus C3-41] gi|168991653|gb|ACA39193.1| Transcription elongation protein [Lysinibacillus sphaericus C3-41] Length = 379 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 155/371 (41%), Positives = 237/371 (63%), Gaps = 2/371 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E P DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYHPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + T F+ A++ Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGI--YPSATSTFVPAVD 361 Query: 368 VDEIIAHLLVA 378 + + V Sbjct: 362 EESDFEEVAVD 372 >gi|126652571|ref|ZP_01724736.1| transcription elongation factor NusA [Bacillus sp. B14905] gi|126590699|gb|EAZ84815.1| transcription elongation factor NusA [Bacillus sp. B14905] Length = 379 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 156/371 (42%), Positives = 237/371 (63%), Gaps = 2/371 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E RP DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYRPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + T F+ A + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGI--YPSATSTFVPAED 361 Query: 368 VDEIIAHLLVA 378 + + V Sbjct: 362 EESDFDEVAVD 372 >gi|228935130|ref|ZP_04097957.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824495|gb|EEM70300.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 368 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVLKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E +VA GF VE+ Sbjct: 349 VTEE--DSVVAFGFDSVED 365 >gi|320530108|ref|ZP_08031178.1| transcription termination factor NusA [Selenomonas artemidis F0399] gi|320137541|gb|EFW29453.1| transcription termination factor NusA [Selenomonas artemidis F0399] Length = 379 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 157/367 (42%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 13 KEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIK 72 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAE Sbjct: 73 TVVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI Sbjct: 133 RGIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYI 192 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+R RGPQ++LSRTHP + KLF ++VPEI GIV++KA++R+ GSR+K+AV S++ Sbjct: 193 IEVKRSPRGPQIMLSRTHPGLLKKLFELQVPEIQEGIVEIKAIAREAGSRSKVAVHSTEE 252 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E Sbjct: 253 RVDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEK 312 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ N + I Sbjct: 313 LSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAA----QEENGGVPEPVDDI 368 Query: 367 NVDEIIA 373 + E A Sbjct: 369 DAAETSA 375 >gi|296113981|ref|YP_003627919.1| transcription termination/antitermination protein NusA [Moraxella catarrhalis RH4] gi|295921675|gb|ADG62026.1| transcription termination/antitermination protein NusA [Moraxella catarrhalis RH4] gi|326559307|gb|EGE09734.1| transcription elongation factor NusA [Moraxella catarrhalis 7169] gi|326564317|gb|EGE14547.1| transcription elongation factor NusA [Moraxella catarrhalis 103P14B1] gi|326565082|gb|EGE15275.1| transcription elongation factor NusA [Moraxella catarrhalis 46P47B1] gi|326567250|gb|EGE17370.1| transcription elongation factor NusA [Moraxella catarrhalis 12P80B1] gi|326568244|gb|EGE18326.1| transcription elongation factor NusA [Moraxella catarrhalis BC8] gi|326569945|gb|EGE19992.1| transcription elongation factor NusA [Moraxella catarrhalis BC1] gi|326570023|gb|EGE20069.1| transcription elongation factor NusA [Moraxella catarrhalis BC7] gi|326572881|gb|EGE22866.1| transcription elongation factor NusA [Moraxella catarrhalis CO72] gi|326573671|gb|EGE23629.1| transcription elongation factor NusA [Moraxella catarrhalis O35E] gi|326574706|gb|EGE24642.1| transcription elongation factor NusA [Moraxella catarrhalis 101P30B1] Length = 493 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 186/513 (36%), Positives = 288/513 (56%), Gaps = 30/513 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + ++ + + T IRV I+ +TG+ FR Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYTEQPEVAIRVHIDRKTGNYDTFR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + IG V + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWQIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER F+ ++G++ISG +K+ IVDLG +G + +D+T+ RE LR R Sbjct: 122 REAERALVADAFESRIGDLISGEIKKQSRDAYIVDLGEGGEGYLAKDQTLPRETLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V + + V R+ R PQ++LSRT + ++ L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 VSAILSQVNRDGRSPQLMLSRTSNEMLIALMNKEVPEISEQIIEIRDVARLPGLRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID++VW+ D A ++I+AL PA V +VL Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVIVWNEDPAQYIISALEPADVIGLVL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED EVI +QL+ AIG +GQNVRLAS+LTG+ +++I E E S + + Sbjct: 302 DEDAKTAEVIFATNDQLARAIGSQGQNVRLASELTGYKLNMILESEYSERQASENQAVID 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +D +A +L GFAD+E +A + E I+G D+ET IQ RA+E + Sbjct: 362 LFYERLELDRDLAEVLAEVGFADIETVAYAPVEEFYEIDGLDDETITAIQERAKEVIISD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 +I Q+ I+E S EL ++ + I L E I T++DLA ++ D+ Sbjct: 422 EIAKQQNIKE--PSAELLALEDMTPAIAYKLAERDIITLDDLAEQAIFDIEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G I+ AR W E Sbjct: 474 -----------GLNSQSAGKFIMAARQS--WFE 493 >gi|30263819|ref|NP_846196.1| transcription elongation factor NusA [Bacillus anthracis str. Ames] gi|42782904|ref|NP_980151.1| transcription elongation factor NusA [Bacillus cereus ATCC 10987] gi|47529243|ref|YP_020592.1| transcription elongation factor NusA [Bacillus anthracis str. 'Ames Ancestor'] gi|47569093|ref|ZP_00239782.1| transcription termination factor nusA [Bacillus cereus G9241] gi|49186666|ref|YP_029918.1| transcription elongation factor NusA [Bacillus anthracis str. Sterne] gi|49479412|ref|YP_037877.1| transcription elongation factor NusA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141674|ref|YP_085157.1| transcription elongation factor NusA [Bacillus cereus E33L] gi|65321143|ref|ZP_00394102.1| COG0195: Transcription elongation factor [Bacillus anthracis str. A2012] gi|118479036|ref|YP_896187.1| transcription elongation factor NusA [Bacillus thuringiensis str. Al Hakam] gi|165872619|ref|ZP_02217250.1| N utilization substance protein A [Bacillus anthracis str. A0488] gi|167639787|ref|ZP_02398056.1| N utilization substance protein A [Bacillus anthracis str. A0193] gi|170706870|ref|ZP_02897328.1| N utilization substance protein A [Bacillus anthracis str. A0389] gi|177652046|ref|ZP_02934592.1| N utilization substance protein A [Bacillus anthracis str. A0174] gi|190568469|ref|ZP_03021376.1| N utilization substance protein A [Bacillus anthracis Tsiankovskii-I] gi|196042176|ref|ZP_03109459.1| N utilization substance protein A [Bacillus cereus NVH0597-99] gi|196044653|ref|ZP_03111888.1| N utilization substance protein A [Bacillus cereus 03BB108] gi|206978435|ref|ZP_03239302.1| N utilization substance protein A [Bacillus cereus H3081.97] gi|217961236|ref|YP_002339804.1| transcription elongation factor NusA [Bacillus cereus AH187] gi|218904944|ref|YP_002452778.1| N utilization substance protein A [Bacillus cereus AH820] gi|222097260|ref|YP_002531317.1| transcription elongation factor nusa [Bacillus cereus Q1] gi|225865795|ref|YP_002751173.1| N utilization substance protein A [Bacillus cereus 03BB102] gi|227813276|ref|YP_002813285.1| N utilization substance protein A [Bacillus anthracis str. CDC 684] gi|228916453|ref|ZP_04080019.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928864|ref|ZP_04091896.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947535|ref|ZP_04109825.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986959|ref|ZP_04147085.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092856|ref|ZP_04223990.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42] gi|229123329|ref|ZP_04252533.1| Transcription elongation protein nusA [Bacillus cereus 95/8201] gi|229140457|ref|ZP_04269012.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26] gi|229186053|ref|ZP_04313223.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1] gi|229197926|ref|ZP_04324642.1| Transcription elongation protein nusA [Bacillus cereus m1293] gi|229602496|ref|YP_002868054.1| N utilization substance protein A [Bacillus anthracis str. A0248] gi|254721998|ref|ZP_05183787.1| transcription elongation factor NusA [Bacillus anthracis str. A1055] gi|254735854|ref|ZP_05193560.1| transcription elongation factor NusA [Bacillus anthracis str. Western North America USA6153] gi|254756007|ref|ZP_05208038.1| transcription elongation factor NusA [Bacillus anthracis str. Vollum] gi|254759332|ref|ZP_05211357.1| transcription elongation factor NusA [Bacillus anthracis str. Australia 94] gi|301055306|ref|YP_003793517.1| transcription elongation factor NusA [Bacillus anthracis CI] gi|30258463|gb|AAP27682.1| N utilization substance protein A [Bacillus anthracis str. Ames] gi|42738831|gb|AAS42759.1| N utilization substance protein A [Bacillus cereus ATCC 10987] gi|47504391|gb|AAT33067.1| N utilization substance protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|47554255|gb|EAL12617.1| transcription termination factor nusA [Bacillus cereus G9241] gi|49180593|gb|AAT55969.1| N utilization substance protein A [Bacillus anthracis str. Sterne] gi|49330968|gb|AAT61614.1| N utilization substance protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975143|gb|AAU16693.1| N utilization substance protein A [Bacillus cereus E33L] gi|118418261|gb|ABK86680.1| N utilization substance protein A [Bacillus thuringiensis str. Al Hakam] gi|164711651|gb|EDR17197.1| N utilization substance protein A [Bacillus anthracis str. A0488] gi|167512188|gb|EDR87565.1| N utilization substance protein A [Bacillus anthracis str. A0193] gi|170128288|gb|EDS97157.1| N utilization substance protein A [Bacillus anthracis str. A0389] gi|172082415|gb|EDT67480.1| N utilization substance protein A [Bacillus anthracis str. A0174] gi|190560473|gb|EDV14451.1| N utilization substance protein A [Bacillus anthracis Tsiankovskii-I] gi|196024688|gb|EDX63360.1| N utilization substance protein A [Bacillus cereus 03BB108] gi|196027028|gb|EDX65652.1| N utilization substance protein A [Bacillus cereus NVH0597-99] gi|206743350|gb|EDZ54790.1| N utilization substance protein A [Bacillus cereus H3081.97] gi|217063696|gb|ACJ77946.1| N utilization substance protein A [Bacillus cereus AH187] gi|218538022|gb|ACK90420.1| N utilization substance protein A [Bacillus cereus AH820] gi|221241318|gb|ACM14028.1| N utilization substance protein A [Bacillus cereus Q1] gi|225790987|gb|ACO31204.1| N utilization substance protein A [Bacillus cereus 03BB102] gi|227004195|gb|ACP13938.1| N utilization substance protein A [Bacillus anthracis str. CDC 684] gi|228585644|gb|EEK43746.1| Transcription elongation protein nusA [Bacillus cereus m1293] gi|228597472|gb|EEK55122.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1] gi|228643018|gb|EEK99294.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26] gi|228660105|gb|EEL15741.1| Transcription elongation protein nusA [Bacillus cereus 95/8201] gi|228690478|gb|EEL44261.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42] gi|228772737|gb|EEM21177.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812055|gb|EEM58386.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830671|gb|EEM76276.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843032|gb|EEM88114.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266904|gb|ACQ48541.1| N utilization substance protein A [Bacillus anthracis str. A0248] gi|300377475|gb|ADK06379.1| transcription elongation factor NusA [Bacillus cereus biovar anthracis str. CI] gi|324327710|gb|ADY22970.1| transcription elongation factor NusA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 368 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E +VA GF VE+ Sbjct: 349 VTEE--DSVVAFGFDSVED 365 >gi|47095907|ref|ZP_00233510.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a F6854] gi|224499904|ref|ZP_03668253.1| transcription elongation factor NusA [Listeria monocytogenes Finland 1988] gi|254828682|ref|ZP_05233369.1| transcription elongation factor NusA [Listeria monocytogenes FSL N3-165] gi|254829921|ref|ZP_05234576.1| transcription elongation factor NusA [Listeria monocytogenes 10403S] gi|254898513|ref|ZP_05258437.1| transcription elongation factor NusA [Listeria monocytogenes J0161] gi|254911996|ref|ZP_05262008.1| N utilization substance protein A [Listeria monocytogenes J2818] gi|254936323|ref|ZP_05268020.1| transcription elongation factor NusA [Listeria monocytogenes F6900] gi|284801707|ref|YP_003413572.1| transcription elongation factor NusA [Listeria monocytogenes 08-5578] gi|284994849|ref|YP_003416617.1| transcription elongation factor NusA [Listeria monocytogenes 08-5923] gi|47015653|gb|EAL06583.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a F6854] gi|258601086|gb|EEW14411.1| transcription elongation factor NusA [Listeria monocytogenes FSL N3-165] gi|258608913|gb|EEW21521.1| transcription elongation factor NusA [Listeria monocytogenes F6900] gi|284057269|gb|ADB68210.1| transcription elongation factor NusA [Listeria monocytogenes 08-5578] gi|284060316|gb|ADB71255.1| transcription elongation factor NusA [Listeria monocytogenes 08-5923] gi|293589960|gb|EFF98294.1| N utilization substance protein A [Listeria monocytogenes J2818] gi|313623922|gb|EFR94030.1| transcription termination factor NusA [Listeria innocua FSL J1-023] Length = 372 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|323489587|ref|ZP_08094814.1| transcription elongation factor NusA [Planococcus donghaensis MPA1U2] gi|323396718|gb|EGA89537.1| transcription elongation factor NusA [Planococcus donghaensis MPA1U2] Length = 375 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 154/364 (42%), Positives = 235/364 (64%), Gaps = 1/364 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + +K I R+V++ + ++ A + + ++RV++N TG + ++ + Sbjct: 4 ELLDAFEVLEKQKGISREVLIEAIEAALVTAYKRNFNQAQNVRVDLNLNTGTMLVYSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ ++G VV + + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDERLQISLEDAKVINPAYELGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF D+ +I++G V+R++ N+ V LG + V+ + E + E+ +P DR+K YI Sbjct: 124 GLIFEEFVDRADDIVNGIVERMDARNLYVGLGKVEAVLPQTEQMPNEHYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV +SRTHP + +LF EVPEIY+GIV++K+++R+ G R+K++VF+ Sbjct: 184 KVERTTRGPQVFVSRTHPGLLRRLFENEVPEIYDGIVEIKSIAREAGDRSKISVFAHRDD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG+CVG +G RVQ +V EL EKIDIV WS + FV NAL P+ V V ++E+ Sbjct: 244 IDPVGSCVGSKGGRVQTIVNELSGEKIDIVEWSEEPVIFVANALSPSKVLDVQVNEEAKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-NRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + N + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPNENSNIELLESGE 363 Query: 367 NVDE 370 +D+ Sbjct: 364 ELDD 367 >gi|262377017|ref|ZP_06070243.1| transcription termination factor NusA [Acinetobacter lwoffii SH145] gi|262308055|gb|EEY89192.1| transcription termination factor NusA [Acinetobacter lwoffii SH145] Length = 494 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 192/516 (37%), Positives = 291/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTHSEEARLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR EVV E+ E CQ ++ DP IG + + +DFGR+A Q AKQVI+ Sbjct: 64 FRQWEVVADEDHEMPACQDAISD---VDPAKWSIGDIRELEVESIDFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +++V RE RG Q+ LSR P ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILFNVNREGRGAQLQLSRAKPDMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSS 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVIDEDARTADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYYARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ +++ E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVTRLDIAEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEIA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+ SEEL ++ G+ +I AL G+ T++DLA + DD+ Sbjct: 420 LADALQQQENIQA--PSEELVAMEGMTVEIAQALAARGVVTVDDLADQATDDIEDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLGAEKAGQLIMKARES--WFN 494 >gi|229157392|ref|ZP_04285470.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342] gi|228626119|gb|EEK82868.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342] Length = 368 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 150/379 (39%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E +VA GF +E+ Sbjct: 349 VTEE--DSVVAFGFDSIED 365 >gi|218898968|ref|YP_002447379.1| N utilization substance protein A [Bacillus cereus G9842] gi|228909640|ref|ZP_04073463.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 200] gi|228940904|ref|ZP_04103463.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973833|ref|ZP_04134409.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980422|ref|ZP_04140732.1| Transcription elongation protein nusA [Bacillus thuringiensis Bt407] gi|218542029|gb|ACK94423.1| N utilization substance protein A [Bacillus cereus G9842] gi|228779242|gb|EEM27499.1| Transcription elongation protein nusA [Bacillus thuringiensis Bt407] gi|228785858|gb|EEM33861.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818740|gb|EEM64806.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849929|gb|EEM94760.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 200] gi|326941582|gb|AEA17478.1| transcription elongation factor NusA [Bacillus thuringiensis serovar chinensis CT-43] Length = 368 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 153/379 (40%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|308068697|ref|YP_003870302.1| transcription elongation protein nusA [Paenibacillus polymyxa E681] gi|305857976|gb|ADM69764.1| Transcription elongation protein nusA [Paenibacillus polymyxa E681] Length = 365 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 143/364 (39%), Positives = 231/364 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++ Sbjct: 2 SMDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV + +ISL AR+ +P + + + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KLIVEEVLDPRTEISLPAAREINPHFQLEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+Y Sbjct: 122 ERGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLGELMPNEKFSHLDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S + Sbjct: 182 ITKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+ Sbjct: 242 AEVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEELGRPRTSTDEMHQDS 361 Query: 366 INVD 369 ++VD Sbjct: 362 VSVD 365 >gi|299823034|ref|ZP_07054920.1| transcription termination factor NusA [Listeria grayi DSM 20601] gi|299816563|gb|EFI83801.1| transcription termination factor NusA [Listeria grayi DSM 20601] Length = 367 Score = 476 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 226/338 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + +K I R+V++ + ++ A + + ++RV++N E G I + + Sbjct: 4 ELMEALYVLENDKGISREVLVDAIEAALVSAYKRNFDKAENVRVDLNMENGSIRVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + +IS + A+ +P ++G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDQVFDSRLEISPEEAQKINPVYNVGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E R DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYRAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY G V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYEGSVEIKSVAREAGDRSKISVYTANKE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G+RVQA+V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 IDPVGACVGPKGARVQAIVDELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|163941553|ref|YP_001646437.1| transcription elongation factor NusA [Bacillus weihenstephanensis KBAB4] gi|229061419|ref|ZP_04198764.1| Transcription elongation protein nusA [Bacillus cereus AH603] gi|229134623|ref|ZP_04263433.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196] gi|229168555|ref|ZP_04296278.1| Transcription elongation protein nusA [Bacillus cereus AH621] gi|163863750|gb|ABY44809.1| NusA antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228614961|gb|EEK72063.1| Transcription elongation protein nusA [Bacillus cereus AH621] gi|228648884|gb|EEL04909.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196] gi|228717842|gb|EEL69490.1| Transcription elongation protein nusA [Bacillus cereus AH603] Length = 368 Score = 476 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 146/355 (41%), Positives = 221/355 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAF 358 >gi|229019010|ref|ZP_04175852.1| Transcription elongation protein nusA [Bacillus cereus AH1273] gi|229162752|ref|ZP_04290709.1| Transcription elongation protein nusA [Bacillus cereus R309803] gi|228620634|gb|EEK77503.1| Transcription elongation protein nusA [Bacillus cereus R309803] gi|228742338|gb|EEL92496.1| Transcription elongation protein nusA [Bacillus cereus AH1273] Length = 368 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 230/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|313896800|ref|ZP_07830348.1| transcription termination factor NusA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974717|gb|EFR40184.1| transcription termination factor NusA [Selenomonas sp. oral taxon 137 str. F0430] Length = 379 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 156/367 (42%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 13 KEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIK 72 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAE Sbjct: 73 TVVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI Sbjct: 133 RGIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYI 192 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+R RGPQ++LSRTHP + KLF ++VPE+ GIV++KA++R+ GSR+K+AV S++ Sbjct: 193 IEVKRSPRGPQIMLSRTHPGLLKKLFELQVPEMQEGIVEIKAIAREAGSRSKVAVHSTEE 252 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E Sbjct: 253 RVDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEK 312 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ N + I Sbjct: 313 LSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAA----QEENGGVPEPVDDI 368 Query: 367 NVDEIIA 373 + E A Sbjct: 369 DAAETSA 375 >gi|229031446|ref|ZP_04187446.1| Transcription elongation protein nusA [Bacillus cereus AH1271] gi|229098285|ref|ZP_04229232.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29] gi|229104378|ref|ZP_04235047.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28] gi|229117302|ref|ZP_04246680.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3] gi|229174482|ref|ZP_04302014.1| Transcription elongation protein nusA [Bacillus cereus MM3] gi|228609042|gb|EEK66332.1| Transcription elongation protein nusA [Bacillus cereus MM3] gi|228666202|gb|EEL21666.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3] gi|228679076|gb|EEL33284.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28] gi|228685183|gb|EEL39114.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29] gi|228729735|gb|EEL80715.1| Transcription elongation protein nusA [Bacillus cereus AH1271] Length = 368 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|325138675|gb|EGC61230.1| Transcription elongation protein nusA [Neisseria meningitidis ES14902] Length = 413 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 186/430 (43%), Positives = 275/430 (63%), Gaps = 25/430 (5%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 I IG + LP FGR A Q+AKQ+I+Q++R+AER++ EF +I+SGTVKRVE Sbjct: 5 IQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVE 64 Query: 151 YGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRR--EQRGPQVLLSRTHPQ 206 +IV++ G D +I RD+ I REN R GDR+++ V QV+LSRT Sbjct: 65 RHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGD 124 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266 F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+RGSRV AV Sbjct: 125 FLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVS 184 Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQ 326 EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV + QL+LAIGR GQ Sbjct: 185 NELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVDENQLALAIGRGGQ 244 Query: 327 NVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 NVRLAS LTGW ++I+T E + + FM +NVDE A +LV EGFA +EE Sbjct: 245 NVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEE 304 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 +A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++ ++ GID+ Sbjct: 305 VAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDMRNLEGIDAD 362 Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHAR 506 + +L E GI T +DLA +VD+L+ + G ++ +++I+ AR Sbjct: 363 MLRSLAEAGITTRDDLAELAVDELIEIT-----------------GVNEETAKAVILTAR 405 Query: 507 YKMGWIEKEK 516 W ++K Sbjct: 406 EH--WFTEDK 413 >gi|218288337|ref|ZP_03492636.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|258511413|ref|YP_003184847.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241696|gb|EED08869.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|257478139|gb|ACV58458.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 373 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 159/343 (46%), Positives = 236/343 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ L+ D +A EK ID++V+L + ++ + R + + +++RVE+ +TG++ ++ Sbjct: 2 NVDFLEALDQLAREKGIDKEVLLEAIEAALIASYRRNFHSAANVRVEVKRDTGEVHVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE ++ +ISL ARD +PS IG VV + P DFGR+A Q+AKQV++Q+V+EA Sbjct: 62 KTVVEEPKDTRLEISLDAARDINPSYQIGDVVEIEVTPRDFGRIAAQAAKQVVMQRVKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ E++SG V R+E +DLG+++ ++ + E ++ + L+ G R+K + Sbjct: 122 ERSVIYSKFADREEEVVSGIVSRLEPRVAYIDLGDTEAILPQSEQMASDKLQVGKRLKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V R +GPQ+++SRTHP + +LF +EVPEIY GIV++KAV+R+ GSR+K+AV S + Sbjct: 182 IARVERTSKGPQIVVSRTHPGLLRRLFELEVPEIYEGIVEIKAVAREAGSRSKIAVHSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+GACVG RGSRVQA+V EL EK+DIV WS D ATFV NAL PA V V + ED Sbjct: 242 PEVDPIGACVGARGSRVQAIVNELNGEKVDIVEWSEDPATFVANALSPAKVIDVHIYEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +VP QLSLAIG+ GQN RLA++LTGW IDI +E + + Sbjct: 302 RVARTVVPDYQLSLAIGKEGQNARLAARLTGWKIDIKSESQMA 344 >gi|323141193|ref|ZP_08076094.1| transcription termination factor NusA [Phascolarctobacterium sp. YIT 12067] gi|322414336|gb|EFY05154.1| transcription termination factor NusA [Phascolarctobacterium sp. YIT 12067] Length = 357 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 145/341 (42%), Positives = 231/341 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + + EK ID +++ + D++ A + GT ++RVE+N ETG+I ++ Sbjct: 2 NADFISAIQELGKEKGIDPELLFQAVDDALVAAYKKNTGTNQNVRVEMNKETGEIHVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE + +++L+ A+ +P G +V + P +FGR+A Q+AKQ ++Q++REA Sbjct: 62 RTVVEGEADGINEMTLEDAQAINPQYLAGDIVEVEVTPKNFGRIAAQNAKQFVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + Y F+ + +I++G ++R+E NV +DLG + V+ +E I E + +R+K+Y Sbjct: 122 ERGQVYERFQSRANDIVTGIIERMENQNVYIDLGKVEAVLTPNEQIPGEIYQYHERMKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+R +GPQ+++SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K++V+++D Sbjct: 182 IVEVKRTNKGPQIMVSRTHPGLLKRLFELEVPEIHDGVVEIKSVAREPGMRSKISVYTAD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG +G RVQ +V ELR EKIDIV +S D A +V NAL PA V K ++E Sbjct: 242 SNVDPVGACVGHKGMRVQTIVNELRGEKIDIVKYSEDPAQYVANALSPAKVVKTNVNEAD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KICRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342 >gi|94986976|ref|YP_594909.1| transcription elongation factor NusA [Lawsonia intracellularis PHE/MN1-00] gi|94731225|emb|CAJ54588.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] Length = 440 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 174/430 (40%), Positives = 267/430 (62%), Gaps = 5/430 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I +++ Sbjct: 2 NLELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + Q+S+ A+ DPS + + L D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD++GEI+SG V+R + G I++LG ++ ++ +DE I +E+ + GDRV+ Sbjct: 122 EQEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGRTEALLPKDEQIPKEHYKRGDRVQGL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ V+RDPGSRAK+ V S + Sbjct: 182 IIDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLSRE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V EL E+IDIV+WSP+ T+ NAL PAI++++ +DE Sbjct: 242 RDVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDETE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 302 NLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTET-----RYNESNAVGRGLEQV 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +V EI L+ G +E++ E+ G E +++ + Sbjct: 357 ASVAEISIETLLHSGLNTLEQINETSDEELIEKLGISESQVNDLRAAVNFLSTTATVDSN 416 Query: 426 KKIRELGVSE 435 KK +E+ + Sbjct: 417 KKKKEVEAEQ 426 >gi|297617185|ref|YP_003702344.1| transcription termination factor NusA [Syntrophothermus lipocalidus DSM 12680] gi|297145022|gb|ADI01779.1| transcription termination factor NusA [Syntrophothermus lipocalidus DSM 12680] Length = 350 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 147/344 (42%), Positives = 233/344 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + E+ I ++V++ + +++ A + +G++ ++ V+++ E+G++ ++ Sbjct: 4 ELIQALGEIEKERGIPKEVLVEAIESALRTAYKKNFGSLQNVTVQMDMESGEVKVYAKKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E V++ ++ L AR+ P ++IG + + P DFGR+A Q+AKQV+IQ++REAER Sbjct: 64 VAETVKDERLEVRLAEAREIYPEVEIGDEIDVEVTPADFGRIAAQTAKQVVIQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF ++ GEI++GTV+RVE VI++LG ++ ++ + I E PG R+K+YI Sbjct: 124 SIVFNEFSNRAGEIVTGTVQRVEQKTVIINLGRTEALMGSQDQIPNEAYEPGQRIKAYIS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R +GPQ+ LSRTHP F+ +LF +EVPEIY G+V++K+++R+ GSR+K++V+S + Sbjct: 184 EVKRSAKGPQIFLSRTHPNFLKRLFELEVPEIYEGLVEIKSIAREAGSRSKISVYSRNEK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL EKIDI+ WSPD ++ NAL P+ V V E Sbjct: 244 VDPVGACVGPKGLRVQNIVRELNGEKIDIIKWSPDIEQYIANALSPSKVVSVEASESEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + R Sbjct: 304 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAVR 347 >gi|229086368|ref|ZP_04218545.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44] gi|228696980|gb|EEL49788.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44] Length = 366 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 223/360 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVSNVFDPRLEISVEEARQMNPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDNMIAFDSVED 363 >gi|152976182|ref|YP_001375699.1| transcription elongation factor NusA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024934|gb|ABS22704.1| NusA antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 366 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 144/360 (40%), Positives = 222/360 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQNGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVSVLVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + F + Sbjct: 304 TTVIVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDNMIAFDSVED 363 >gi|167635811|ref|ZP_02394120.1| N utilization substance protein A [Bacillus anthracis str. A0442] gi|170687901|ref|ZP_02879115.1| N utilization substance protein A [Bacillus anthracis str. A0465] gi|254683477|ref|ZP_05147337.1| transcription elongation factor NusA [Bacillus anthracis str. CNEVA-9066] gi|254739620|ref|ZP_05197314.1| transcription elongation factor NusA [Bacillus anthracis str. Kruger B] gi|167528768|gb|EDR91526.1| N utilization substance protein A [Bacillus anthracis str. A0442] gi|170668217|gb|EDT18966.1| N utilization substance protein A [Bacillus anthracis str. A0465] Length = 368 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 151/379 (39%), Positives = 229/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGIIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E +VA GF VE+ Sbjct: 349 VTEE--DSVVAFGFDSVED 365 >gi|329577093|gb|EGG58566.1| transcription termination factor NusA [Enterococcus faecalis TX1467] Length = 399 Score = 474 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 148/363 (40%), Positives = 229/363 (63%), Gaps = 1/363 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + Sbjct: 2 SKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAE 361 Query: 365 AIN 367 ++ Sbjct: 362 EMD 364 >gi|51892657|ref|YP_075348.1| transcription elongation factor NusA [Symbiobacterium thermophilum IAM 14863] gi|51856346|dbj|BAD40504.1| transcriptional termination-antitermination factor [Symbiobacterium thermophilum IAM 14863] Length = 360 Score = 474 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 151/355 (42%), Positives = 231/355 (65%), Gaps = 3/355 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L+ D + E+ I R+V++ + ++ A R +G+ ++RV + +TG+ ++ Sbjct: 2 KAEILEALDDLVRERGISREVLIEAIEAALISAYRRNFGSAQNVRVFFDDKTGEYRVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV + Q+SL+ AR ++PS+ +G V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 KEIVEEVTDPRLQVSLEEARMKNPSLQLGDVFEVEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETISRENLRPGDRV 182 ER Y E+ + GEI++G V+R + V L + V+ +E I E R+ Sbjct: 122 ERGMIYEEYSSREGEIVTGLVQRQDPKTRTVYLELARGVEAVLTANEQIPGERYVENQRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+Y+ +V+R +GP + +SRTHP + +LF +EVPEI++G V++K ++R+ GSR+K+AV Sbjct: 182 KAYVIEVKRTTKGPAIAVSRTHPGLLKRLFELEVPEIHDGTVEIKGIAREAGSRSKIAVM 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D ++DPVGACVG +G RVQ +V EL+ EKID+V WSPD FV AL PA VT+VV D Sbjct: 242 ARDPNVDPVGACVGQKGQRVQNIVDELQGEKIDVVEWSPDPEVFVAKALSPAKVTQVVCD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 E+ VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + +E Sbjct: 302 EESRIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAEAGAWDELSE 356 >gi|158320557|ref|YP_001513064.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs] gi|158140756|gb|ABW19068.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 345 Score = 474 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 139/344 (40%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + +K I +D+++ + ++ + + +G+ ++RVEIN + G++ ++ Sbjct: 2 NAEFTEALEQIEKDKGISKDILIDAVEAALISSYKRNFGSSQNVRVEINRDNGEVHVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++ ++V + +I + A+ +P +G + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KKITDDVIDDLLEIHIDDAKIVNPKYSVGDTFESEVTPKNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ EII+G V RV GNV + LG ++ ++ E I E GDR+K Y Sbjct: 122 ERGIVYDEFINRESEIITGEVSRVAKGNVYISLGRTEAILGPGEQIPNEVYEHGDRIKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+LLSRTHP + +LF +EVPEI++G V++K++SR+ GSRAK+AV S D Sbjct: 182 IVEVKKTTKGPQILLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREAGSRAKIAVDSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGACVG +G+RVQ +V EL+ EKIDI+ +S D+ F+ ++L PA V ++ D Sbjct: 242 PNVDAVGACVGPKGARVQTIVDELKGEKIDIIKYSEDAKEFIASSLSPAKVLLCDINNDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + Sbjct: 302 KTAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQINE 345 >gi|75760860|ref|ZP_00740874.1| N utilization substance protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902319|ref|ZP_04066476.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 4222] gi|74491644|gb|EAO54846.1| N utilization substance protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857288|gb|EEN01791.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 4222] Length = 368 Score = 474 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 152/379 (40%), Positives = 228/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV N E G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNTEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|258404630|ref|YP_003197372.1| transcription elongation factor NusA [Desulfohalobium retbaense DSM 5692] gi|257796857|gb|ACV67794.1| NusA antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 440 Score = 474 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 169/407 (41%), Positives = 262/407 (64%), Gaps = 5/407 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL + D ++ ++ IDRD+++ + ++++ + + DI V + E GDI +++ Sbjct: 2 SMELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVNKKFKNKLDIEVSFDEEAGDIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ +ISL AR DP++ + + + D GR+A QSAKQVIIQ++R+A Sbjct: 62 KVVVEEVDDPNTEISLDEARIEDPNVQLEDELGFRMEISDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD+ GEIISG ++R + I++LG ++ ++ + E I RE R GDRV+ Y Sbjct: 122 EQEIIYEEYKDRRGEIISGIIQRRDRAGWIINLGRTEAILPKQEQIPRERFRRGDRVQGY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DVR+E RGPQ+++SR+HP +M LF EVPE+ +G V + V+RDPG RAK+AV S D Sbjct: 182 IIDVRKEGRGPQIVVSRSHPDYMAALFKREVPEVGDGTVTIMGVARDPGKRAKVAVLSQD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DPVGACVG+RGSR+Q +V E + E+IDIVVW+ D AT+ +NAL PA ++++ +D+ Sbjct: 242 SDVDPVGACVGVRGSRIQNIVQEFKGERIDIVVWNHDVATYAMNALSPAKISRMTVDDVE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+VP +QL+LAIGR+GQNV+LAS+L GW IDIITE + + QA Sbjct: 302 KTLEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIITESRYGADPSDQAD-----LEQA 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +V I V G ++ L ++A+++G D +++ Sbjct: 357 EHVTGIPTDHFVQAGLGSLDALREASDEQLAAVDGMDTSKMADLRAA 403 >gi|262370081|ref|ZP_06063408.1| transcription termination/antitermination protein [Acinetobacter johnsonii SH046] gi|262315120|gb|EEY96160.1| transcription termination/antitermination protein [Acinetobacter johnsonii SH046] Length = 494 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 188/516 (36%), Positives = 297/516 (57%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----IRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + ++ +RVEI+ +TG+ S Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRKTGEYST 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR EVV E+ E CQ ++ DP+ IG + +P +DFGR+A Q AKQVI+ Sbjct: 64 FRQWEVVADEDHEMPACQDAISD---VDPAQWSIGDIRELEVPSIDFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG N++ + R+E I++E LRP Sbjct: 121 QKIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +++V RE RG Q+ LSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILFNVNREGRGAQLQLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DE+ ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E +Q + + Sbjct: 301 IVIDEEERTADIIFATSDQLARAIGSQGQNVRLASELTGYKLNMMLEDEYHARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDLFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAEVVELLQSRAKEVA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I++ S EL ++ G+ +I AL G+ T++DLA + DD+ Sbjct: 420 LADALQQQENIQD--PSAELVAMEGMTQEIAYALAARGVITIDDLADQATDDIADIES-- 475 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +I+ AR W Sbjct: 476 ---------------LGTEKAGQLIMKARES--WFN 494 >gi|320354998|ref|YP_004196337.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032] gi|320123500|gb|ADW19046.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032] Length = 451 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 179/452 (39%), Positives = 283/452 (62%), Gaps = 16/452 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV A L+ +I D + +K IDR +++ + ++++ A R YGT +I V+ N + G++ Sbjct: 1 MVGAENLK--RIVDQICRDKGIDRALLIDAIEEAVRSAVRKKYGTRREIEVQFNEDLGEV 58 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVII 119 +F+ VV+EV + +ISL+ AR DP I++ + + + D GR+A QSAKQVII Sbjct: 59 EVFQYRTVVDEVYDEETEISLEEARRLDPEIELDDDLGEKMDNIADLGRIAAQSAKQVII 118 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 ++R+AERD Y F+D+ G I++G V+R E G++I++LG +D V+ R+ I + + + G Sbjct: 119 HRMRDAERDVIYEMFRDREGTIVNGIVQRFERGDMIINLGRTDAVLPREGQIPKRSYKQG 178 Query: 180 DRVKSYIYDVRREQR-----GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 DR+++Y+ +VRR+ R Q++LSRT +F++KLF MEVPEI GIV++ SR+PG Sbjct: 179 DRIRAYLQEVRRDTREGKFRDSQLILSRTCNEFLIKLFEMEVPEIAEGIVKIMGASREPG 238 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 RAK+AV S +S +DPVGACVG++GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA Sbjct: 239 FRAKIAVSSIESDVDPVGACVGLKGSRVQNVVQELQGERIDIVPWSPDPARYVCNALAPA 298 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+ V+++++ + V+VP +QLSLAIGR+GQNVRLAS+L GW ID+ ++ + + Sbjct: 299 EVSMVIVEDERKALLVVVPDDQLSLAIGRQGQNVRLASRLLGWKIDVKSQSRYANMDNTE 358 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + + + VDE +A L A G LA + I ++ ++ D++ A +Q A Sbjct: 359 Y----RSLLAVDGVDENLADRLFAAGITSAPLLAAMDIEQLMALARIDQDKAQGMQKAA- 413 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 + + +K + +EL + + Sbjct: 414 ---AAMQPSKEKTAQPAPDVQELTDQEPVTPQ 442 >gi|304404290|ref|ZP_07385952.1| transcription termination factor NusA [Paenibacillus curdlanolyticus YK9] gi|304347268|gb|EFM13100.1| transcription termination factor NusA [Paenibacillus curdlanolyticus YK9] Length = 366 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 143/365 (39%), Positives = 232/365 (63%), Gaps = 1/365 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + EK I +D+++ + ++ + + + T ++RV++N TG I ++ Sbjct: 2 SMEFIEALQEIEREKGISKDILIDAIEAALISSYKRNFNTAQNVRVDVNRFTGVIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +I+++ AR+ +P + + + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVDEVLDSRMEITVEAAREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKS+ Sbjct: 122 ERGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ+++SRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV S + Sbjct: 182 ITKVENTTKGPQIIMSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVHSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS + +V NAL P+ V +V++ E Sbjct: 242 VEVDPVGSCVGPKGMRVQTIVNELKGEKIDIVRWSENIDEYVANALSPSKVLEVIVFEQE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + +E Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEFGRPRSDESDTMHQD 361 Query: 365 AINVD 369 ++++D Sbjct: 362 SVSID 366 >gi|116872753|ref|YP_849534.1| transcription elongation factor NusA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741631|emb|CAK20755.1| N utilization substance protein A, transcription factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 372 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 152/371 (40%), Positives = 233/371 (62%), Gaps = 5/371 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++A Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNG-----IEAPE 358 Query: 368 VDEIIAHLLVA 378 V+E + L Sbjct: 359 VEEAESETLTE 369 >gi|296330875|ref|ZP_06873350.1| transcription elongation factor NusA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674393|ref|YP_003866065.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. spizizenii str. W23] gi|296151880|gb|EFG92754.1| transcription elongation factor NusA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412637|gb|ADM37756.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. spizizenii str. W23] Length = 372 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 149/342 (43%), Positives = 226/342 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARE 345 >gi|289434603|ref|YP_003464475.1| transcription termination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170847|emb|CBH27389.1| transcription termination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638097|gb|EFS03364.1| transcription termination factor NusA [Listeria seeligeri FSL S4-171] Length = 372 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 227/360 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++S+ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTSNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDAAPVEEAE 363 >gi|169831086|ref|YP_001717068.1| transcription elongation factor NusA [Candidatus Desulforudis audaxviator MP104C] gi|169637930|gb|ACA59436.1| NusA antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 359 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 159/348 (45%), Positives = 237/348 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L + E+SI +V+L + ++ A R +GT + RV+++ TGD ++ Sbjct: 2 NSEFLAALRDLEKERSISVEVLLEAIEAALLSAYRRNFGTSHNARVQVDRHTGDCKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EVE+ QISL+ AR +P + V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RTVVQEVEDPQDQISLEEARAINPGYQLEDTVESEITPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF + G+I++G V+R+E NV ++LG ++ V+ E I REN RPG R+K+Y Sbjct: 122 ERNMVFEEFASREGDIVTGVVQRIEQRNVYIELGKTEAVLPPAEQIPRENYRPGQRLKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +L+SRTHP + +LF +EVPE++ G+V++KAV+R+ G R+K+AV+S+D Sbjct: 182 IVEVKKTTKGPLILVSRTHPGLLKRLFEIEVPELHQGLVELKAVAREAGIRSKIAVYSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG +G+RVQA+V EL EKID+V WSPDS+ FV ++L PA V V + ED Sbjct: 242 EGIDPVGACVGPKGARVQAIVQELNGEKIDVVKWSPDSSKFVSSSLSPAKVIAVEVWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ Sbjct: 302 KIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYRE 349 >gi|30021905|ref|NP_833536.1| transcription elongation factor NusA [Bacillus cereus ATCC 14579] gi|229129092|ref|ZP_04258065.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4] gi|29897461|gb|AAP10737.1| N utilization substance protein A [Bacillus cereus ATCC 14579] gi|228654329|gb|EEL10194.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4] Length = 368 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 150/379 (39%), Positives = 230/379 (60%), Gaps = 17/379 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKI IV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIAIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGI--------------- 348 Query: 368 VDEIIAHLLVAEGFADVEE 386 V E ++A GF VE+ Sbjct: 349 VTEE--DSVIAFGFDSVED 365 >gi|229012999|ref|ZP_04170164.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048] gi|228748253|gb|EEL98113.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048] Length = 364 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 220/354 (62%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + EK I +D+++ + ++ A + + ++RV NPE G I + +V Sbjct: 1 MLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKDV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 61 VDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAERG 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 121 VIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFITK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + + Sbjct: 181 VEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENIDV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE Sbjct: 241 DPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKAT 300 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 301 TVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAF 354 >gi|313633405|gb|EFS00241.1| transcription termination factor NusA [Listeria seeligeri FSL N1-067] Length = 372 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 148/360 (41%), Positives = 227/360 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDAAPVEEAE 363 >gi|292669518|ref|ZP_06602944.1| transcription termination factor NusA [Selenomonas noxia ATCC 43541] gi|292648841|gb|EFF66813.1| transcription termination factor NusA [Selenomonas noxia ATCC 43541] Length = 377 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 158/364 (43%), Positives = 232/364 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 13 KEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIK 72 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE EN ISL AR +P +G V+ + P +FGR+A Q+AKQV++Q++REAE Sbjct: 73 TVVEEAENDITDISLAQARAINPDYAVGDVIEIEMTPANFGRIAAQTAKQVVMQRLREAE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ ++ +I++G V+RVE NV VD+G ++ V+ E + E GD +++YI Sbjct: 133 RGIVYEEYMNRSADIVTGIVQRVEGRNVFVDIGRAEAVLMATEQMPTETYNYGDTLRAYI 192 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+R RGPQ++LSRTHP + KLF ++VPE+ G+V++K+++R+ GSR+K+AV SS+ Sbjct: 193 IEVKRTSRGPQIMLSRTHPGLLKKLFELQVPEMQEGVVEIKSIAREAGSRSKIAVASSEE 252 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 253 RVDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVNEAEK 312 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + E A+ Sbjct: 313 VSRVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAQELESGSEEEADMPVAPAL 372 Query: 367 NVDE 370 +E Sbjct: 373 TAEE 376 >gi|228992544|ref|ZP_04152471.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM 12442] gi|228998592|ref|ZP_04158179.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17] gi|229006092|ref|ZP_04163780.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4] gi|228755168|gb|EEM04525.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4] gi|228761060|gb|EEM10019.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17] gi|228767178|gb|EEM15814.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM 12442] Length = 366 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 143/360 (39%), Positives = 223/360 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPIEYVANALSPSQVVKVLVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDNMIAFDSVED 363 >gi|226313023|ref|YP_002772917.1| transcription elongation factor NusA [Brevibacillus brevis NBRC 100599] gi|226095971|dbj|BAH44413.1| transcription elongation protein NusA [Brevibacillus brevis NBRC 100599] Length = 363 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 229/345 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ +A+ EK I +DV++ + ++ + + + ++RV++N +G + ++ Sbjct: 2 NGDFIEALEAIEREKGITKDVLIEAIEAALISGYKRNFNSAQNVRVDVNRHSGMVRVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +IS + A++ DP+ + +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KSVVEEVLDPRLEISQEAAQEIDPNFRLEDIVEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ +I++G V+R++ N +DLG ++ V+ E + E+ + DRVK+Y Sbjct: 122 ERGLIYSEFIEREDDIVTGVVQRMDARNYYIDLGKAEAVMPITEKMPSEDFKSQDRVKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SRTHP + +LF +EVPEIY+G+V++K+V+R+ G R+K+AV S + Sbjct: 182 IIKVEKTTKGPQIVVSRTHPGLLKRLFELEVPEIYDGVVEIKSVAREAGDRSKIAVHSIN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DPVGACVG +G RVQ +VTEL+ EKIDIV WS D A +V NAL PA V V ++ Sbjct: 242 ADVDPVGACVGPKGMRVQTIVTELKGEKIDIVRWSEDPAEYVANALSPAKVLHVEVNVAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 302 KVTRVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESQADQE 346 >gi|220931626|ref|YP_002508534.1| NusA antitermination factor [Halothermothrix orenii H 168] gi|219992936|gb|ACL69539.1| NusA antitermination factor [Halothermothrix orenii H 168] Length = 377 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 154/348 (44%), Positives = 234/348 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E L D + EK I ++V++ + ++ A + +G+ ++RV I P++G++ ++ Sbjct: 2 NIEFLHALDDIEKEKGISKEVLIEAIETALLSAYKKEFGSKENVRVHIVPDSGEVHVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV+EV N +ISL+ A+ + + + G +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KKVVDEVNNERKEISLEEAQKLNKNYEPGDIVEKEVTPANFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y E+K K GEII+GTV+R NV++DLG ++ ++ E I E G R+K Y Sbjct: 122 ERDVIYEEYKQKEGEIITGTVQRFHNNNVLIDLGRTEALLPPSEQIPGELYEMGRRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V +GP++L+SR+HP + +LF +EVPEI++GIV++KAV+R+ G R+K+AV S D Sbjct: 182 VVEVASTTKGPRILVSRSHPGLLKRLFEVEVPEIFDGIVEIKAVAREAGYRSKMAVSSYD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG +G RVQAVV +L EKIDI+ WS D A V NAL PA V V LDE+ Sbjct: 242 ENVDPVGSCVGPKGMRVQAVVDQLNGEKIDIIEWSEDPAILVANALNPAKVINVSLDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 EV+VP QLSLAIG+ GQN RLA++LTGW +DI +E + + Sbjct: 302 KVAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKSESQFEKETGE 349 >gi|69246862|ref|ZP_00604154.1| Transcription termination factor NusA [Enterococcus faecium DO] gi|257882944|ref|ZP_05662597.1| transcription termination factor NusA [Enterococcus faecium 1,231,502] gi|257884342|ref|ZP_05663995.1| transcription termination factor NusA [Enterococcus faecium 1,231,501] gi|257889277|ref|ZP_05668930.1| transcription termination factor NusA [Enterococcus faecium 1,231,410] gi|260560111|ref|ZP_05832289.1| transcription termination factor NusA [Enterococcus faecium C68] gi|261207401|ref|ZP_05922087.1| transcription termination factor NusA [Enterococcus faecium TC 6] gi|289566677|ref|ZP_06447094.1| transcription termination factor NusA [Enterococcus faecium D344SRF] gi|293560200|ref|ZP_06676702.1| transcription termination factor NusA [Enterococcus faecium E1162] gi|293567723|ref|ZP_06679065.1| transcription termination factor NusA [Enterococcus faecium E1071] gi|294613937|ref|ZP_06693872.1| transcription termination factor NusA [Enterococcus faecium E1636] gi|294620763|ref|ZP_06699970.1| transcription termination factor NusA [Enterococcus faecium U0317] gi|314937505|ref|ZP_07844838.1| transcription termination factor NusA [Enterococcus faecium TX0133a04] gi|314942164|ref|ZP_07849018.1| transcription termination factor NusA [Enterococcus faecium TX0133C] gi|314947496|ref|ZP_07850911.1| transcription termination factor NusA [Enterococcus faecium TX0082] gi|314951483|ref|ZP_07854532.1| transcription termination factor NusA [Enterococcus faecium TX0133A] gi|314992573|ref|ZP_07857991.1| transcription termination factor NusA [Enterococcus faecium TX0133B] gi|314995492|ref|ZP_07860592.1| transcription termination factor NusA [Enterococcus faecium TX0133a01] gi|68195043|gb|EAN09506.1| Transcription termination factor NusA [Enterococcus faecium DO] gi|257818602|gb|EEV45930.1| transcription termination factor NusA [Enterococcus faecium 1,231,502] gi|257820180|gb|EEV47328.1| transcription termination factor NusA [Enterococcus faecium 1,231,501] gi|257825637|gb|EEV52263.1| transcription termination factor NusA [Enterococcus faecium 1,231,410] gi|260073946|gb|EEW62270.1| transcription termination factor NusA [Enterococcus faecium C68] gi|260078292|gb|EEW65997.1| transcription termination factor NusA [Enterococcus faecium TC 6] gi|289161536|gb|EFD09419.1| transcription termination factor NusA [Enterococcus faecium D344SRF] gi|291589566|gb|EFF21372.1| transcription termination factor NusA [Enterococcus faecium E1071] gi|291593212|gb|EFF24786.1| transcription termination factor NusA [Enterococcus faecium E1636] gi|291599743|gb|EFF30753.1| transcription termination factor NusA [Enterococcus faecium U0317] gi|291605872|gb|EFF35304.1| transcription termination factor NusA [Enterococcus faecium E1162] gi|313590326|gb|EFR69171.1| transcription termination factor NusA [Enterococcus faecium TX0133a01] gi|313592865|gb|EFR71710.1| transcription termination factor NusA [Enterococcus faecium TX0133B] gi|313596323|gb|EFR75168.1| transcription termination factor NusA [Enterococcus faecium TX0133A] gi|313599087|gb|EFR77932.1| transcription termination factor NusA [Enterococcus faecium TX0133C] gi|313643146|gb|EFS07726.1| transcription termination factor NusA [Enterococcus faecium TX0133a04] gi|313646046|gb|EFS10626.1| transcription termination factor NusA [Enterococcus faecium TX0082] Length = 391 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 147/380 (38%), Positives = 233/380 (61%), Gaps = 4/380 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 PNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + V+VP QLSLAIG+RGQN RLA++LT IDI +E + + + ++ + Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMTEFYENQEQQKE---TE 358 Query: 365 AINVDEIIAHLLVAEGFADV 384 ++ + I+ L + + + Sbjct: 359 ELHDEAIVQSDLTDDEYETI 378 >gi|327441013|dbj|BAK17378.1| transcription elongation factor [Solibacillus silvestris StLB046] Length = 375 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 236/368 (64%), Gaps = 2/368 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ +K I RDV++ + ++ A + + ++RV++N +TG + ++ + Sbjct: 4 ELLDALTALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLQTGSMVVYSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +I+L+ A+ + + +IG VV + + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLEIALEDAKFINAAYEIGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D+ +I++G ++R + N+ V +G + + +E I E +P R++ YI Sbjct: 124 GLIYEEYVDREDDIVTGVIERQDARNIYVSIGKVEAALPVNEQIQGEVYKPTSRIRVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY+G V++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYDGTVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T F+ + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSETST--FVPRED 361 Query: 368 VDEIIAHL 375 +E+ L Sbjct: 362 AEEVKFDL 369 >gi|317153847|ref|YP_004121895.1| transcription termination factor NusA [Desulfovibrio aespoeensis Aspo-2] gi|316944098|gb|ADU63149.1| transcription termination factor NusA [Desulfovibrio aespoeensis Aspo-2] Length = 466 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 171/403 (42%), Positives = 265/403 (65%), Gaps = 5/403 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ A +G DI V N ++G+I +F Sbjct: 3 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFKV 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISL+ AR+ DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+ Sbjct: 63 VVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+KD++GEI SG V+R + I++LG ++ ++ +DE I RE + GDRV++YI Sbjct: 123 EIIFEEYKDRLGEITSGIVQRRDRTGWIINLGRTEALLPKDEQIPRERYKRGDRVQAYII 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +E RGPQV++SR+HP +M++LF EVPE+ +G V++ V+RDPG RAK+AV S D Sbjct: 183 DVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q VV E++ E+IDIVVWSPD A + +AL PA++T++ +D++ Sbjct: 243 VDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE R + N + Q + Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNASRKGMDQVAS 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 V EI GF +E + E+ +I G + +I+ Sbjct: 358 VAEIPMESFFNAGFESLESIVRATNEELLAINGLTKSKIGDIR 400 >gi|206602206|gb|EDZ38688.1| Transcription termination factor (NusA) [Leptospirillum sp. Group II '5-way CG'] Length = 452 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 174/431 (40%), Positives = 262/431 (60%), Gaps = 19/431 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++ Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREA Sbjct: 63 RRIVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+ Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D Sbjct: 183 LLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++DPVG+CVG++G RVQAVV EL EK+DI+ WSPD +TF+ AL PA +V + + Sbjct: 243 PNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSIKDMG 302 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED-SINRQKDFNERTQFF 362 V+V QLSLAIGRRG NVRLA++LTGW +DI +E + S + ER Sbjct: 303 TEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVASL 362 Query: 363 MQAI----------------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 + + V +A +L GF ++ +A + I+++ F +TA Sbjct: 363 AETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTA 422 Query: 407 VEIQGRAREYL 417 ++ A+++L Sbjct: 423 AKLIQTAQDFL 433 >gi|323697469|ref|ZP_08109381.1| transcription termination factor NusA [Desulfovibrio sp. ND132] gi|323457401|gb|EGB13266.1| transcription termination factor NusA [Desulfovibrio desulfuricans ND132] Length = 459 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 173/403 (42%), Positives = 265/403 (65%), Gaps = 5/403 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ A YG DI V N E G+I +F Sbjct: 3 ELKRAIDQISKDRGIDRDLLIDTLEEAVRSAVARKYGETMDIEVAFNEERGEIEVFEFKV 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ AR DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+ Sbjct: 63 VVDEVHDPISEISLEDARTHDPNAQLDDEMGFPVKVEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+KD+V EI SG ++R + I++LG ++ ++ ++E I RE + GDRV++YI Sbjct: 123 EIIYEEYKDRVSEIASGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQAYII 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +E RGPQV++SR+HP +MV+LF EVPE+ +G V++ V+RDPG RAK+AV S D Sbjct: 183 DVLKESRGPQVIVSRSHPDYMVELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q VV EL+ E+IDIVVWSPD A + +AL PA++T++ +D++ Sbjct: 243 VDPVGACVGIRGSRIQNVVQELKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE R + N + Q + Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNAARKGMDQIAS 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 V E+ + GF +E + E+ +I+G E +++ Sbjct: 358 VAEVPMENFFSAGFESIESIVQASDEELLAIKGMTESKIGDMR 400 >gi|257878526|ref|ZP_05658179.1| transcription termination factor NusA [Enterococcus faecium 1,230,933] gi|257894715|ref|ZP_05674368.1| transcription termination factor NusA [Enterococcus faecium 1,231,408] gi|294618723|ref|ZP_06698255.1| transcription termination factor NusA [Enterococcus faecium E1679] gi|257812754|gb|EEV41512.1| transcription termination factor NusA [Enterococcus faecium 1,230,933] gi|257831094|gb|EEV57701.1| transcription termination factor NusA [Enterococcus faecium 1,231,408] gi|291595036|gb|EFF26381.1| transcription termination factor NusA [Enterococcus faecium E1679] Length = 391 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 147/380 (38%), Positives = 232/380 (61%), Gaps = 4/380 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 PNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + + ++ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMTEFYENQEQQKE---TE 358 Query: 365 AINVDEIIAHLLVAEGFADV 384 ++ + I+ L + + + Sbjct: 359 ELHDEAIVQSDLTDDEYETI 378 >gi|16800427|ref|NP_470695.1| transcription elongation factor NusA [Listeria innocua Clip11262] gi|16413832|emb|CAC96590.1| nusA [Listeria innocua Clip11262] Length = 372 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 153/379 (40%), Positives = 235/379 (62%), Gaps = 10/379 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRN----------D 353 Query: 368 VDEIIAHLLVAEGFADVEE 386 V+ + +E F + EE Sbjct: 354 VEAPVVEEAESETFTEDEE 372 >gi|293556649|ref|ZP_06675214.1| transcription termination factor NusA [Enterococcus faecium E1039] gi|291601184|gb|EFF31471.1| transcription termination factor NusA [Enterococcus faecium E1039] Length = 391 Score = 471 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 145/353 (41%), Positives = 222/353 (62%), Gaps = 1/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 PNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V+VP QLSLAIG+RGQN RLA++LT IDI +E + + + + Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMTEFYENQEQQ 354 >gi|46907548|ref|YP_013937.1| transcription elongation factor NusA [Listeria monocytogenes serotype 4b str. F2365] gi|46880816|gb|AAT04114.1| N utilization substance protein A [Listeria monocytogenes serotype 4b str. F2365] Length = 372 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|217964531|ref|YP_002350209.1| transcription termination factor NusA [Listeria monocytogenes HCC23] gi|290893567|ref|ZP_06556550.1| N utilization substance protein A [Listeria monocytogenes FSL J2-071] gi|217333801|gb|ACK39595.1| transcription termination factor NusA [Listeria monocytogenes HCC23] gi|290556912|gb|EFD90443.1| N utilization substance protein A [Listeria monocytogenes FSL J2-071] gi|307570903|emb|CAR84082.1| transcription termination factor [Listeria monocytogenes L99] gi|313619131|gb|EFR90921.1| transcription termination factor NusA [Listeria innocua FSL S4-378] Length = 372 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|254824619|ref|ZP_05229620.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-194] gi|254852628|ref|ZP_05241976.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-503] gi|254932363|ref|ZP_05265722.1| transcription elongation factor NusA [Listeria monocytogenes HPB2262] gi|255521785|ref|ZP_05389022.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-175] gi|300765438|ref|ZP_07075420.1| N utilization substance protein A [Listeria monocytogenes FSL N1-017] gi|258605943|gb|EEW18551.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-503] gi|293583919|gb|EFF95951.1| transcription elongation factor NusA [Listeria monocytogenes HPB2262] gi|293593857|gb|EFG01618.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-194] gi|300513875|gb|EFK40940.1| N utilization substance protein A [Listeria monocytogenes FSL N1-017] gi|328468605|gb|EGF39605.1| transcription elongation factor NusA [Listeria monocytogenes 1816] gi|328475044|gb|EGF45832.1| transcription elongation factor NusA [Listeria monocytogenes 220] gi|332311765|gb|EGJ24860.1| Transcription elongation protein nusA [Listeria monocytogenes str. Scott A] Length = 372 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|78358201|ref|YP_389650.1| transcription elongation factor NusA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220606|gb|ABB39955.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 429 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 178/409 (43%), Positives = 270/409 (66%), Gaps = 5/409 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL + D ++ ++ +DR +++ + ++++ + YG D+ V N ETG+I +++ Sbjct: 2 SMELKKAIDQISKDRGLDRALLIETLEEAVRTSVIRKYGDELDLEVNFNEETGEIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EEVE+ QISL+ AR DPS+ + + L D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVTEEVEDEASQISLEDARAHDPSVQLDDEMGFRLKIEDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EFKD++ E+ SG ++R + I++LG ++ ++ +DE I RE+ + GDRV++ Sbjct: 122 EQEIIYEEFKDRLNEVASGIIQRRDKTGWIINLGRTEALLPKDEQIPREHYKRGDRVQAI 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+E RGPQV++SR+HP +M LF EVPE+ + VQV V+RDPGSRAK+AV S D Sbjct: 182 IIEVRKEGRGPQVVVSRSHPDYMAALFKREVPEVDDETVQVMGVARDPGSRAKVAVTSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+++++++DE+ Sbjct: 242 RDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSPDIATYARNALSPAVISRIIVDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+VP +QL+ AIGR+GQNV+LAS+L GW IDI TE R + N + Q Sbjct: 302 NMLEVVVPDDQLTNAIGRKGQNVKLASKLLGWKIDIYTET-----RYNEANAIGRGLEQL 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 +V E+ VA GF+ +EEL E+ ++EG +++ Sbjct: 357 ASVAEVPIEQFVAAGFSSIEELRDATDEELMAVEGLTPGKISDLRAAIN 405 >gi|303240818|ref|ZP_07327331.1| transcription termination factor NusA [Acetivibrio cellulolyticus CD2] gi|302591706|gb|EFL61441.1| transcription termination factor NusA [Acetivibrio cellulolyticus CD2] Length = 371 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 147/363 (40%), Positives = 237/363 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ + + EK I++D+++ + ++ A + +G+ ++RV ++ +TGD ++ L Sbjct: 4 DLIHALEQLEKEKGIEKDIIIEAIEAALISAYKRNFGSSQNVRVSVDRQTGDFKVYALKR 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + +N IS++ A+ + +D + + P FGR+A Q+AKQV++Q++REAER Sbjct: 64 VTSDPQNEYMDISVENAKKINAELDEEDMAEVEVTPKKFGRIAAQTAKQVVVQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF +K EI++G V+R E NVI+DLG ++ V+ E IS E + DR+K Y+ Sbjct: 124 GIIFDEFSNKEAEIVTGIVQRTEKKNVIIDLGKTEAVLAPTEQISGEEYKFNDRIKVYVI 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R +GPQ+++SRTHP + +LF +EVPEI+ G+V++K++SR+PGSR K+AV+S D + Sbjct: 184 EVKRTTKGPQIMVSRTHPGLIKRLFELEVPEIHEGVVEIKSISREPGSRTKIAVYSKDDN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V ELR EKIDI+ WS + ++ ++L PA V +V + E+ Sbjct: 244 VDPVGACVGQKGTRVQTIVDELRGEKIDIIKWSSNPQEYISSSLSPAKVVRVDISEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +V VP QLSLAIG+ GQN RLA++LTGW IDI +E + ++ F A + Sbjct: 304 AKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRATIEQQLLNFDGGFQSAFS 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|194014307|ref|ZP_03052924.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061] gi|194013333|gb|EDW22898.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061] Length = 371 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 233/368 (63%), Gaps = 1/368 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISVDDAANMNPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-NRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LT W IDI +E + + F++A Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIFPRTEDSESLFLEAE 363 Query: 367 NVDEIIAH 374 V E Sbjct: 364 PVAEESDE 371 >gi|157692343|ref|YP_001486805.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032] gi|157681101|gb|ABV62245.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032] Length = 371 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 233/368 (63%), Gaps = 1/368 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISVDDAANINPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-NRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LT W IDI +E + + F++A Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIFPRTEDSESLFLEAE 363 Query: 367 NVDEIIAH 374 V E Sbjct: 364 PVAEESDE 371 >gi|317484449|ref|ZP_07943362.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6] gi|316924309|gb|EFV45482.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6] Length = 434 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 169/409 (41%), Positives = 267/409 (65%), Gaps = 5/409 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I + + Sbjct: 2 NLELKKAIDQISKDKGLDRDMLVDTLEDAVRTSVIRKYGENIDVEVSYNDDTGEIQVHQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++V + +I ++ AR+ DPS+ + + PL D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVDDVADPDTEIDIEKARELDPSVQLDDEIGFPLKVTDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EFKD+VGEI SG ++R + G I++LG ++ ++ ++E I RE+ + GDRV++ Sbjct: 122 EQELIYEEFKDRVGEICSGIIQRRDKGGWIINLGRTEAILPKEEQIPREHYKRGDRVQAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++E RGPQ+++SR+H + LF EVPE+ +G VQ+ V+RDPGSRAK+AV S + Sbjct: 182 IIEVKKEGRGPQIVISRSHRDYTAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVLSRE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V EL E+IDIVVWSP+ +T+ NAL PA+++++V+DE Sbjct: 242 RDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSPEISTYARNALAPAVISRIVVDEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 302 NLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTET-----RYNETNAIGRGLEQV 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 +V E+ LV+ GF +E+L E++ + +++ Sbjct: 357 ASVAEVSVDSLVSAGFTTLEQLQDATDEELSEKLSLSDSRIGDLRAAIN 405 >gi|256618850|ref|ZP_05475696.1| transcription termination factor NusA [Enterococcus faecalis ATCC 4200] gi|256598377|gb|EEU17553.1| transcription termination factor NusA [Enterococcus faecalis ATCC 4200] Length = 399 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 152/370 (41%), Positives = 231/370 (62%), Gaps = 3/370 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + Sbjct: 2 SKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSKYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAE 361 Query: 365 AINVDEIIAH 374 +DE I H Sbjct: 362 --EMDEAIIH 369 >gi|226223923|ref|YP_002758030.1| N utilization substance protein A (NusA protein) [Listeria monocytogenes Clip81459] gi|225876385|emb|CAS05094.1| Putative N utilization substance protein A (NusA protein) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 372 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKVNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|257085469|ref|ZP_05579830.1| transcription termination factor NusA [Enterococcus faecalis Fly1] gi|256993499|gb|EEU80801.1| transcription termination factor NusA [Enterococcus faecalis Fly1] Length = 403 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 152/370 (41%), Positives = 232/370 (62%), Gaps = 3/370 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + Sbjct: 2 SKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAE 361 Query: 365 AINVDEIIAH 374 +DE I H Sbjct: 362 --EMDEAIIH 369 >gi|29375840|ref|NP_814994.1| transcription elongation factor NusA [Enterococcus faecalis V583] gi|227518531|ref|ZP_03948580.1| transcription elongation factor NusA [Enterococcus faecalis TX0104] gi|227553057|ref|ZP_03983106.1| transcription elongation factor NusA [Enterococcus faecalis HH22] gi|229546052|ref|ZP_04434777.1| transcription elongation factor NusA [Enterococcus faecalis TX1322] gi|229550242|ref|ZP_04438967.1| transcription elongation factor NusA [Enterococcus faecalis ATCC 29200] gi|255973018|ref|ZP_05423604.1| transcription termination factor NusA [Enterococcus faecalis T1] gi|256762268|ref|ZP_05502848.1| transcription termination factor NusA [Enterococcus faecalis T3] gi|256852913|ref|ZP_05558283.1| transcription elongation factor NusA [Enterococcus faecalis T8] gi|256958759|ref|ZP_05562930.1| transcription termination factor NusA [Enterococcus faecalis DS5] gi|256962135|ref|ZP_05566306.1| transcription termination factor NusA [Enterococcus faecalis Merz96] gi|256965334|ref|ZP_05569505.1| transcription termination factor NusA [Enterococcus faecalis HIP11704] gi|257078788|ref|ZP_05573149.1| transcription termination factor NusA [Enterococcus faecalis JH1] gi|257082768|ref|ZP_05577129.1| transcription termination factor NusA [Enterococcus faecalis E1Sol] gi|257086618|ref|ZP_05580979.1| transcription termination factor NusA [Enterococcus faecalis D6] gi|257089675|ref|ZP_05584036.1| transcriptional termination factor nusA [Enterococcus faecalis CH188] gi|257415889|ref|ZP_05592883.1| transcription termination factor NusA [Enterococcus faecalis AR01/DG] gi|257419091|ref|ZP_05596085.1| transcription termination factor nusA [Enterococcus faecalis T11] gi|257422841|ref|ZP_05599831.1| transcription elongation factor nusA [Enterococcus faecalis X98] gi|293383160|ref|ZP_06629077.1| transcription termination factor NusA [Enterococcus faecalis R712] gi|293387686|ref|ZP_06632231.1| transcription termination factor NusA [Enterococcus faecalis S613] gi|294780121|ref|ZP_06745494.1| transcription termination factor NusA [Enterococcus faecalis PC1.1] gi|300859670|ref|ZP_07105758.1| transcription termination factor NusA [Enterococcus faecalis TUSoD Ef11] gi|307268540|ref|ZP_07549913.1| transcription termination factor NusA [Enterococcus faecalis TX4248] gi|307273441|ref|ZP_07554686.1| transcription termination factor NusA [Enterococcus faecalis TX0855] gi|307277604|ref|ZP_07558696.1| transcription termination factor NusA [Enterococcus faecalis TX2134] gi|307288429|ref|ZP_07568417.1| transcription termination factor NusA [Enterococcus faecalis TX0109] gi|307291252|ref|ZP_07571136.1| transcription termination factor NusA [Enterococcus faecalis TX0411] gi|312899340|ref|ZP_07758673.1| transcription termination factor NusA [Enterococcus faecalis TX0470] gi|312904021|ref|ZP_07763189.1| transcription termination factor NusA [Enterococcus faecalis TX0635] gi|312907251|ref|ZP_07766242.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 512] gi|312909869|ref|ZP_07768717.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 516] gi|312952268|ref|ZP_07771143.1| transcription termination factor NusA [Enterococcus faecalis TX0102] gi|29343302|gb|AAO81064.1| N utilization substance protein A [Enterococcus faecalis V583] gi|227074013|gb|EEI11976.1| transcription elongation factor NusA [Enterococcus faecalis TX0104] gi|227177800|gb|EEI58772.1| transcription elongation factor NusA [Enterococcus faecalis HH22] gi|229304680|gb|EEN70676.1| transcription elongation factor NusA [Enterococcus faecalis ATCC 29200] gi|229308825|gb|EEN74812.1| transcription elongation factor NusA [Enterococcus faecalis TX1322] gi|255964036|gb|EET96512.1| transcription termination factor NusA [Enterococcus faecalis T1] gi|256683519|gb|EEU23214.1| transcription termination factor NusA [Enterococcus faecalis T3] gi|256711372|gb|EEU26410.1| transcription elongation factor NusA [Enterococcus faecalis T8] gi|256949255|gb|EEU65887.1| transcription termination factor NusA [Enterococcus faecalis DS5] gi|256952631|gb|EEU69263.1| transcription termination factor NusA [Enterococcus faecalis Merz96] gi|256955830|gb|EEU72462.1| transcription termination factor NusA [Enterococcus faecalis HIP11704] gi|256986818|gb|EEU74120.1| transcription termination factor NusA [Enterococcus faecalis JH1] gi|256990798|gb|EEU78100.1| transcription termination factor NusA [Enterococcus faecalis E1Sol] gi|256994648|gb|EEU81950.1| transcription termination factor NusA [Enterococcus faecalis D6] gi|256998487|gb|EEU85007.1| transcriptional termination factor nusA [Enterococcus faecalis CH188] gi|257157717|gb|EEU87677.1| transcription termination factor NusA [Enterococcus faecalis ARO1/DG] gi|257160919|gb|EEU90879.1| transcription termination factor nusA [Enterococcus faecalis T11] gi|257164665|gb|EEU94625.1| transcription elongation factor nusA [Enterococcus faecalis X98] gi|291079499|gb|EFE16863.1| transcription termination factor NusA [Enterococcus faecalis R712] gi|291082875|gb|EFE19838.1| transcription termination factor NusA [Enterococcus faecalis S613] gi|294452796|gb|EFG21225.1| transcription termination factor NusA [Enterococcus faecalis PC1.1] gi|295112810|emb|CBL31447.1| transcription termination factor NusA [Enterococcus sp. 7L76] gi|300850488|gb|EFK78237.1| transcription termination factor NusA [Enterococcus faecalis TUSoD Ef11] gi|306497483|gb|EFM67016.1| transcription termination factor NusA [Enterococcus faecalis TX0411] gi|306500600|gb|EFM69929.1| transcription termination factor NusA [Enterococcus faecalis TX0109] gi|306505869|gb|EFM75047.1| transcription termination factor NusA [Enterococcus faecalis TX2134] gi|306509968|gb|EFM78993.1| transcription termination factor NusA [Enterococcus faecalis TX0855] gi|306515136|gb|EFM83678.1| transcription termination factor NusA [Enterococcus faecalis TX4248] gi|310626279|gb|EFQ09562.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 512] gi|310629652|gb|EFQ12935.1| transcription termination factor NusA [Enterococcus faecalis TX0102] gi|310632497|gb|EFQ15780.1| transcription termination factor NusA [Enterococcus faecalis TX0635] gi|311289827|gb|EFQ68383.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 516] gi|311293491|gb|EFQ72047.1| transcription termination factor NusA [Enterococcus faecalis TX0470] gi|315027493|gb|EFT39425.1| transcription termination factor NusA [Enterococcus faecalis TX2137] gi|315030928|gb|EFT42860.1| transcription termination factor NusA [Enterococcus faecalis TX4000] gi|315034084|gb|EFT46016.1| transcription termination factor NusA [Enterococcus faecalis TX0017] gi|315036752|gb|EFT48684.1| transcription termination factor NusA [Enterococcus faecalis TX0027] gi|315145578|gb|EFT89594.1| transcription termination factor NusA [Enterococcus faecalis TX2141] gi|315147751|gb|EFT91767.1| transcription termination factor NusA [Enterococcus faecalis TX4244] gi|315151452|gb|EFT95468.1| transcription termination factor NusA [Enterococcus faecalis TX0012] gi|315153231|gb|EFT97247.1| transcription termination factor NusA [Enterococcus faecalis TX0031] gi|315155990|gb|EFU00007.1| transcription termination factor NusA [Enterococcus faecalis TX0043] gi|315157838|gb|EFU01855.1| transcription termination factor NusA [Enterococcus faecalis TX0312] gi|315160336|gb|EFU04353.1| transcription termination factor NusA [Enterococcus faecalis TX0645] gi|315165485|gb|EFU09502.1| transcription termination factor NusA [Enterococcus faecalis TX1302] gi|315166759|gb|EFU10776.1| transcription termination factor NusA [Enterococcus faecalis TX1341] gi|315169950|gb|EFU13967.1| transcription termination factor NusA [Enterococcus faecalis TX1342] gi|315575674|gb|EFU87865.1| transcription termination factor NusA [Enterococcus faecalis TX0309B] gi|315578368|gb|EFU90559.1| transcription termination factor NusA [Enterococcus faecalis TX0630] gi|315579882|gb|EFU92073.1| transcription termination factor NusA [Enterococcus faecalis TX0309A] gi|323480502|gb|ADX79941.1| transcription elongation protein nusA [Enterococcus faecalis 62] gi|327534893|gb|AEA93727.1| transcription termination factor NusA [Enterococcus faecalis OG1RF] Length = 399 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 152/370 (41%), Positives = 232/370 (62%), Gaps = 3/370 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + Sbjct: 2 SKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAE 361 Query: 365 AINVDEIIAH 374 +DE I H Sbjct: 362 --EMDEAIIH 369 >gi|293570613|ref|ZP_06681664.1| transcription termination factor NusA [Enterococcus faecium E980] gi|291609284|gb|EFF38555.1| transcription termination factor NusA [Enterococcus faecium E980] Length = 391 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 233/380 (61%), Gaps = 4/380 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 QNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +K + + Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEQQNE---TE 358 Query: 365 AINVDEIIAHLLVAEGFADV 384 ++ + I+ L + + + Sbjct: 359 ELHDEAIVQSDLTDDEYETI 378 >gi|42523053|ref|NP_968433.1| transcription elongation factor NusA [Bdellovibrio bacteriovorus HD100] gi|39575258|emb|CAE79426.1| N utilization substance protein A [Bdellovibrio bacteriovorus HD100] Length = 462 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 173/410 (42%), Positives = 261/410 (63%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L ++ D V +K ID+ VV+ + + AAR YGT +I N +TG++ LF E Sbjct: 8 DLSKVIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFKE 67 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ + +I L A+ DP++ + + + D GR+A Q+AKQ+I+QKVR+A Sbjct: 68 VVPREKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRDA 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GEI SG +RVE G ++VDLG ++ I E I E +PGDR++ Y Sbjct: 128 ERNIIFNEFEERKGEIASGIARRVEKGAIVVDLGRTEAYIPPREQIPGEQYKPGDRIQGY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ RGPQ+++SR ++++KLF MEVPEIY+G+V++ A +R+PG RAK+AV S D Sbjct: 188 LSEVRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRSKD 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +S+DPVGACVGM+GSRVQ +V ELR EKIDIV W D F NAL PA +++V LD+ Sbjct: 248 NSVDPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDDAN 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +E++VP QLSLAIG+RGQNVRLA++LT W +DII+E + + M Sbjct: 308 REMEIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIISESSAASRTAESIFN----LMLI 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE-ETAVEIQGRAR 414 + E +A + GF + +A + E+ +I G+D+ + A ++ A+ Sbjct: 364 PGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAEKLSKEAK 413 >gi|323173571|gb|EFZ59200.1| transcription elongation protein nusA [Escherichia coli LT-68] Length = 381 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 167/398 (41%), Positives = 250/398 (62%), Gaps = 19/398 (4%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 +QKVREAER +F++ GEII+G VK+V N+ +DLGN ++ VI R++ + REN R Sbjct: 1 MQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 60 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRA Sbjct: 61 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 120 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V Sbjct: 121 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 180 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 181 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 240 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L Sbjct: 241 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 300 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 301 ATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE--- 357 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 358 --------------GLTDEKAGALIMAAR-NICWFGDE 380 >gi|16078723|ref|NP_389542.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. 168] gi|221309538|ref|ZP_03591385.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. 168] gi|221313862|ref|ZP_03595667.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318785|ref|ZP_03600079.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323057|ref|ZP_03604351.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. SMY] gi|321315427|ref|YP_004207714.1| transcription elongation factor NusA [Bacillus subtilis BSn5] gi|7404400|sp|P32727|NUSA_BACSU RecName: Full=Transcription elongation protein nusA gi|2634032|emb|CAB13533.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. subtilis str. 168] gi|291484215|dbj|BAI85290.1| transcription elongation factor NusA [Bacillus subtilis subsp. natto BEST195] gi|320021701|gb|ADV96687.1| transcription elongation factor NusA [Bacillus subtilis BSn5] Length = 371 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 149/342 (43%), Positives = 226/342 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARE 345 >gi|227551756|ref|ZP_03981805.1| transcription termination factor NusA [Enterococcus faecium TX1330] gi|257895648|ref|ZP_05675301.1| transcription termination factor NusA [Enterococcus faecium Com12] gi|293377741|ref|ZP_06623930.1| transcription termination factor NusA [Enterococcus faecium PC4.1] gi|227179061|gb|EEI60033.1| transcription termination factor NusA [Enterococcus faecium TX1330] gi|257832213|gb|EEV58634.1| transcription termination factor NusA [Enterococcus faecium Com12] gi|292643741|gb|EFF61862.1| transcription termination factor NusA [Enterococcus faecium PC4.1] Length = 391 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 224/353 (63%), Gaps = 1/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 QNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +K ++ Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEHQ 354 >gi|153004006|ref|YP_001378331.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|152027579|gb|ABS25347.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 556 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 205/538 (38%), Positives = 296/538 (55%), Gaps = 53/538 (9%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++ Sbjct: 4 NVNLNLILDQVAKDKGIDRTRLVEILEEAIGSAAKRHFGMERNLKARYDEEKGQVDLFQV 63 Query: 66 LEVVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM--------------- 104 L +V + + I + VA ++ ++ G + P+ Sbjct: 64 LTIVTDPTEETPLADPVNMIPVSVAHEKGIEVEPGDELDFPIYYRTEDEAEARAQDEQWG 123 Query: 105 ----------DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNV Sbjct: 124 DLLKLKTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNV 183 Query: 155 IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 IVDLG ++ V+ E + RE+ R GDR+++Y+ DV RE +GPQ++LSR + KLF M Sbjct: 184 IVDLGRAEAVLPVREQVPRESYRAGDRIQAYVMDVLRESKGPQIILSRASVDLLRKLFEM 243 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKI Sbjct: 244 EVPEIAEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKI 303 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV W D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQL Sbjct: 304 DIVPWDDDYARFVCNALAPAEVSRVLLDEQNKAMEIIVPDDQLSLAIGRRGQNVRLASQL 363 Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 TGW +DI +E R K+ E AI + E +L A GF +++A Sbjct: 364 TGWKLDINSES-----RVKEMREFATESFGAIGIPEATQEMLYAHGFRKAQDVANAASEM 418 Query: 395 IASIEGFDEETAVEIQGRARE------------YLEGIDITLQKKIR---ELGVSEELCS 439 + GF + E+Q RARE E + + R EL E Sbjct: 419 LTQFPGFTMDMIPELQKRAREQSIVDAEKEMRLEQEREAARIAEARRHPDELTQEERFAR 478 Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 + G+ K L G ++E + S D++ +E+ G I+K ++G ++ Sbjct: 479 VRGVGEKTIEQLKVAGYGSVEAVHNES--DVMRLAESSGLGIKKARQLKHAVGVYLEE 534 >gi|257887083|ref|ZP_05666736.1| transcription termination factor NusA [Enterococcus faecium 1,141,733] gi|257823137|gb|EEV50069.1| transcription termination factor NusA [Enterococcus faecium 1,141,733] Length = 391 Score = 469 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 223/353 (63%), Gaps = 1/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 QNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +K + Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEQQ 354 >gi|196229760|ref|ZP_03128624.1| NusA antitermination factor [Chthoniobacter flavus Ellin428] gi|196226086|gb|EDY20592.1| NusA antitermination factor [Chthoniobacter flavus Ellin428] Length = 421 Score = 469 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 168/411 (40%), Positives = 264/411 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D +K I R+V+L + +++ AAR G D+RV+I+P++G++ ++ Sbjct: 3 NSEILAGLDFFERDKGIKREVLLEAINNAVLAAARKAVGPAKDLRVDIDPKSGEMKVYAK 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L VVE+VEN +I L +A+ + +G + P+ P DFGR+A Q+AKQ ++Q++R+A Sbjct: 63 LIVVEKVENKHDEIKLDLAKKFKNDVQLGEELEVPVTPRDFGRIAAQTAKQAMMQRIRQA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EFKD+ GEI+SGTV+R E +V+VDLG + V+ E + E+ GDR+++Y Sbjct: 123 EKEMIYDEFKDRAGEIVSGTVRRFERLDVVVDLGKFEAVMPNKERVQTEDYNVGDRIRAY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V+ RGP++++SR+HP F+ +LF EV EI + V++K ++R+ G R K+AV+S++ Sbjct: 183 VVAVQNGARGPEIIISRSHPNFVRRLFETEVSEIADRTVEIKGIAREAGHRTKIAVWSAN 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGMRG+RV+ +V EL +EK+DI+ WS D+ FV+ AL+PA V V LDE Sbjct: 243 DKVDPVGACVGMRGARVKNIVRELNNEKVDIIRWSSDTKEFVLEALKPAKVKSVTLDESK 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 I + V ++QLSLAIG+RGQN RL S+LTGW I+I ++ + + + + A Sbjct: 303 KNILIKVDEDQLSLAIGKRGQNARLTSRLTGWDINIEQDKSVIEDFNERVGKAAKTLADA 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + +D+ +A LV G + +E L V+ +IA G E A EIQ A+ Sbjct: 363 LGIDQAVAVSLVKGGLSTLETLTEVEPQDIADTVGIPLEKATEIQTAAKRA 413 >gi|124515701|gb|EAY57210.1| transcription termination factor (NusA) [Leptospirillum rubarum] Length = 452 Score = 469 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 173/431 (40%), Positives = 260/431 (60%), Gaps = 19/431 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++ Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREA Sbjct: 63 RRIVERVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+ Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D Sbjct: 183 LLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++DPVG+CVG++G RVQAVV EL EK+DI+ W+ D ATF+ AL PA +V + + Sbjct: 243 PNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWNSDPATFIARALSPAKAVRVSIKDMG 302 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED-SINRQKDFNERTQFF 362 V+V QLSLAIGRRG NVRLA++LTGW +DI +E + S + ER Sbjct: 303 SEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVASL 362 Query: 363 MQAI----------------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 + + V +A +L GF ++ +A + I+++ F +TA Sbjct: 363 AETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTA 422 Query: 407 VEIQGRAREYL 417 ++ A+++L Sbjct: 423 AKLIQTAQDFL 433 >gi|315174358|gb|EFU18375.1| transcription termination factor NusA [Enterococcus faecalis TX1346] Length = 399 Score = 469 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 151/370 (40%), Positives = 232/370 (62%), Gaps = 3/370 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + Sbjct: 2 SKEMLNALEVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAE 361 Query: 365 AINVDEIIAH 374 +DE I H Sbjct: 362 --EMDEAIIH 369 >gi|259046783|ref|ZP_05737184.1| N utilization substance protein A [Granulicatella adiacens ATCC 49175] gi|259036551|gb|EEW37806.1| N utilization substance protein A [Granulicatella adiacens ATCC 49175] Length = 366 Score = 469 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 218/353 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I +DVV++ + ++ A + YG ++ VE + + G++ ++ + Sbjct: 2 SKEMLRALTVLEEEKGISKDVVITALEAALVSAYKKNYGQAQNVEVEFDQKKGNMHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE V + T ++SL+ A ++ + ++G + + P DFGR+A Q+AKQVI+Q++R+A Sbjct: 62 KEVVEYVFDSTLEVSLEEAHEKHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF EI++G V R ++ V V+LG + + + I E P R+K Sbjct: 122 ERTNIYNEFIQYENEIMTGVVDRQDFRYVYVNLGRIVAGMAKQDQIPTEEYLPDQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQ+ +SRTHP + +LF EVPEIY+G+V++ +++R+ G RAK+AV ++D Sbjct: 182 VSKVDNTTKGPQIFVSRTHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRTND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVG CVG RG RV +V EL E +DIV W+ D A ++ NAL PA V KV + D Sbjct: 242 ANLDPVGTCVGPRGQRVHNIVEELNGENMDIVEWNEDPAIYIKNALNPAQVLKVEFNSDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + N Sbjct: 302 NGCIVVVPDHQLSLAIGKRGQNARLAAKLTGYRIDIKSETAYEEYLENLANPV 354 >gi|23099050|ref|NP_692516.1| transcription elongation factor NusA [Oceanobacillus iheyensis HTE831] gi|22777278|dbj|BAC13551.1| transcriptional termination-antitermination factor [Oceanobacillus iheyensis HTE831] Length = 364 Score = 469 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 229/345 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++L + +A EK ID+D+++ + ++ A + + + S++RVE+N ETG ++++ Sbjct: 2 SMQLFDAIENLAKEKGIDKDILMEALEAALISAYKKNFKSASNVRVELNEETGKMAVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E+E+ +I L A+ DP+ ++ V+ + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KTVVDEIEDVQQEIPLDEAKKIDPNYEVDDVIEVEVTPKDFGRIAAQAAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + E+ D+ ++++G ++R + V V+LG + + E + E+ DR+K + Sbjct: 122 ERGVIFSEYVDREEDVMTGIIQRKDPRFVYVNLGKIEAKLAESEQMPTEDYHVHDRLKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQ+ +SR+HP + +LF MEVPEIY+G V++K+V+R+ G R+K++V++ D Sbjct: 182 VTKVENTSKGPQIFISRSHPGLLKRLFEMEVPEIYDGTVEIKSVAREAGDRSKISVYAPD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG RG RVQA+VTEL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 242 PEIDPVGSCVGQRGQRVQAIVTELKGEKIDIVQWSEDPVVYVSNALSPSKVVKVSVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E Sbjct: 302 KSTTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREE 346 >gi|256830179|ref|YP_003158907.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256579355|gb|ACU90491.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 441 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 163/407 (40%), Positives = 263/407 (64%), Gaps = 5/407 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K IDR++++ + ++I+ + YG DI V N ETG+I +++ Sbjct: 2 NLELKKAIDQISKDKGIDREMLIDTLEEAIRASVTKKYGDKMDIEVTFNEETGEIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE+E+ +I + A DP++++ + L D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVEEIEDPDTEILMVDALKHDPNVELDDAIGFRLQVEDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ + E+K++ GEI+SG ++R + I++LG ++ ++ +D+ I RE R GDRV+ Sbjct: 122 EQEIIFEEYKNRKGEIVSGIIQRRDRSGWIINLGRTEALLPKDKQIPRERFRQGDRVEGL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+E RGPQ++++R+ P++M LF EVPE+ +G V + V+RDPG RAK+ V S D Sbjct: 182 IIEVRKEGRGPQIIITRSDPEYMTALFRREVPEVADGTVNIMGVARDPGLRAKVTVLSQD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG+RGSR+ ++V ELR E+IDIV+WSPD AT+ NAL PA ++K+ +D++ Sbjct: 242 SNVDPVGACVGIRGSRIHSIVQELRGERIDIVLWSPDIATYAANALSPARISKIAIDDEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+VP++QL+ AIG++GQNV+LA++L GW IDI T R ++ Q Sbjct: 302 KSLEVVVPEDQLTPAIGKKGQNVKLAAKLLGWKIDIFT-----NTRFNKVHKDRHLLEQL 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 + ++ GF +E +A ++ I+G EE ++G Sbjct: 357 ASAAQVSIADFAEAGFDSLEAMAACTNEQLLDIQGISEENIGALRGA 403 >gi|315641143|ref|ZP_07896222.1| transcription elongation factor NusA [Enterococcus italicus DSM 15952] gi|315483151|gb|EFU73668.1| transcription elongation factor NusA [Enterococcus italicus DSM 15952] Length = 376 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 152/382 (39%), Positives = 231/382 (60%), Gaps = 13/382 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +D+V+ + ++ A + YG ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKDIVIDALEAALISAYKRHYGQSQNVEVEFDRKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + ++ E +P DR+K Y Sbjct: 122 ERSIIYNEFSAYEKDIMQGIVERQDSRYIYVNLGKIEAVLSKQDQMANEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKIAVRSHD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVG CVG +G RVQA+V EL+ E +DIV W D A F+ NAL PA VT V+ D Sbjct: 242 ENIDPVGTCVGPKGQRVQALVNELKGENMDIVEWDEDPAIFIANALNPAEVTDVLFDTTN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + F + Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAE------------FYE 349 Query: 365 AINVDEIIAHLLVAEGFADVEE 386 ++ E A + A +E Sbjct: 350 ELDRQEAQADVSEDTEVATLEA 371 >gi|298528714|ref|ZP_07016118.1| NusA antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298512366|gb|EFI36268.1| NusA antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 432 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 170/434 (39%), Positives = 271/434 (62%), Gaps = 9/434 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL +I D ++ +K IDRD+++ + ++++ + YG+ DI V N + G+I +++ Sbjct: 2 SLELKKIIDQISKDKGIDRDMLVDTLEEAVRSSVYKKYGSNLDIEVNFNEDNGEIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E+ + +I L+ A++ DP++ + + L D GR+A QSAKQV++QK+R+A Sbjct: 62 KVVVDEIGDPNNEILLEDAKEHDPNVQLEDELGFTLDVKDLGRIAAQSAKQVLMQKMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD++GEIISG ++R + I++LG ++ ++ RDE I +E GDRV++Y Sbjct: 122 EQEIIYEEYKDRIGEIISGIIQRRDRAGWIINLGRTEALLPRDEQIPKERFHRGDRVEAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DVRRE R PQ+++SR+HP++++ LF EVPEI +G +++ V RDPG RAK+ V + D Sbjct: 182 IIDVRRESRTPQIIVSRSHPEYLISLFKREVPEISDGTIKIMNVVRDPGKRAKVGVMTKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG++GSR+ +V EL+ E+IDIV+WSPD AT+ NAL PA +T++ +DED Sbjct: 242 MDVDPVGACVGVKGSRIHNIVQELKGERIDIVIWSPDIATYAANALSPARITRITVDEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+VP +QL+ AIG++GQNV+LAS L GW ID+ TE R + E Q Q Sbjct: 302 KSLEVVVPDDQLTPAIGQKGQNVKLASSLLGWKIDVYTES-----RYNEVYEHHQVMEQL 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL- 424 + I EGF ++ L E+ +E ++G A +L + L Sbjct: 357 ASAAGISISEFNREGFDSLDSLVQSTDEELKQKLDLSDENLESLKG-AINFLGPQKLNLT 415 Query: 425 --QKKIRELGVSEE 436 + ++E + Sbjct: 416 GEEPLLQEKKPEQN 429 >gi|257869192|ref|ZP_05648845.1| transcription termination factor NusA [Enterococcus gallinarum EG2] gi|257803356|gb|EEV32178.1| transcription termination factor NusA [Enterococcus gallinarum EG2] Length = 398 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 146/349 (41%), Positives = 224/349 (64%), Gaps = 1/349 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K + Sbjct: 122 ERTIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKVAVRSFD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA VT V+ D D Sbjct: 242 ANVDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNDDPAVFIANALNPAEVTDVIFDVDN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSESDMEEFYAK 350 >gi|257865909|ref|ZP_05645562.1| transcription termination factor NusA [Enterococcus casseliflavus EC30] gi|257872242|ref|ZP_05651895.1| transcription termination factor NusA [Enterococcus casseliflavus EC10] gi|257799843|gb|EEV28895.1| transcription termination factor NusA [Enterococcus casseliflavus EC30] gi|257806406|gb|EEV35228.1| transcription termination factor NusA [Enterococcus casseliflavus EC10] Length = 404 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 146/349 (41%), Positives = 225/349 (64%), Gaps = 1/349 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K + Sbjct: 122 ERNIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D Sbjct: 242 ANVDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSDVIFDVDN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAK 350 >gi|303229675|ref|ZP_07316463.1| transcription termination factor NusA [Veillonella atypica ACS-134-V-Col7a] gi|303232179|ref|ZP_07318882.1| transcription termination factor NusA [Veillonella atypica ACS-049-V-Sch6] gi|302513285|gb|EFL55324.1| transcription termination factor NusA [Veillonella atypica ACS-049-V-Sch6] gi|302515800|gb|EFL57754.1| transcription termination factor NusA [Veillonella atypica ACS-134-V-Col7a] Length = 361 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 153/348 (43%), Positives = 222/348 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D VE+N ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPHSNPDAYVELNRETGAYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR D +IG +V + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVEFPETEISLLDARKIDKRYEIGDIVEADVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVYINLGKTEAILPPTEQIGTETYHEGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D S Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDES 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 IDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + N F Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAENPFTGF 351 >gi|325569920|ref|ZP_08145914.1| transcription elongation factor NusA [Enterococcus casseliflavus ATCC 12755] gi|325157043|gb|EGC69211.1| transcription elongation factor NusA [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 146/349 (41%), Positives = 225/349 (64%), Gaps = 1/349 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K + Sbjct: 122 ERNIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D Sbjct: 242 ANVDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSNVIFDVDN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAK 350 >gi|238019442|ref|ZP_04599868.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748] gi|237864141|gb|EEP65431.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748] Length = 358 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 223/353 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETGD + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGDYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLEARKIDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV ++LG ++ ++ E I+ E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIATETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 VDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|260887250|ref|ZP_05898513.1| transcription termination factor NusA [Selenomonas sputigena ATCC 35185] gi|330838993|ref|YP_004413573.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185] gi|260863312|gb|EEX77812.1| transcription termination factor NusA [Selenomonas sputigena ATCC 35185] gi|329746757|gb|AEC00114.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185] Length = 380 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 154/357 (43%), Positives = 233/357 (65%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + L+ A+ E+ ++ +V+ + + ++ A + T +RV ++ TG ++ Sbjct: 13 NDGDFLEAVHALGKERGLEAEVLFAAIEAALSSAYLKDFKTAEQVRVALDRMTGKYHVYA 72 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVEEVE+ QISL AR +P+ ++ + + P FGR+A Q+AKQV++Q +RE Sbjct: 73 TKTVVEEVEDDARQISLADARAVNPNYEVDDKIELEVTPATFGRIAAQTAKQVVVQHIRE 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF ++ G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+ Sbjct: 133 AERGIVYEEFSNRDGDIVTGRVQRVEAKNVFIDLGKTEAVLTATEQIPGEEYHHGDRIKA 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V + +GP+VL+SRTHP + +LF +EVPEI G+V++K+V+R+PG R+K+AV+S Sbjct: 193 YIIEVCKTVKGPRVLVSRTHPGLLKRLFELEVPEIQEGVVEIKSVAREPGMRSKIAVYSK 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVG+ VG +G RVQA+V ELR+EKIDIV W+P+ A F+ NAL PA V V ++E+ Sbjct: 253 DENVDPVGSSVGHKGMRVQAIVDELRNEKIDIVKWNPEPAKFIANALSPAKVISVAINEE 312 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 V+VP QLSLAIG+ GQNVRLA++LTGW IDI EE+ + + + Sbjct: 313 AKESRVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKNEEQAAAETLDESMSVIEV 369 >gi|218887601|ref|YP_002436922.1| transcription elongation factor NusA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758555|gb|ACL09454.1| NusA antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 443 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 181/429 (42%), Positives = 271/429 (63%), Gaps = 6/429 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + ++++ + +G D V N ETG+I +++ Sbjct: 2 SLELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++VEN +ISL+ AR DPS+ + + + D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVKKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD+ GEI+SG ++R + I++LG ++ ++ ++E I RE+ + GDRV++ Sbjct: 122 EQEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRVQAI 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ VSRDPGSRAK AV S D Sbjct: 182 LIDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAVMSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V E+R E+IDIVVWSPD AT+ NAL PA+++++V+DE+ Sbjct: 242 RDVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVVDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 302 NLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRGLEQI 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +V EI +A GF +E L E+AS G +++ A +L Sbjct: 357 ASVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLRA-AINFLAPQAQDDA 415 Query: 426 KKIRELGVS 434 E Sbjct: 416 DATAEPDAE 424 >gi|255976057|ref|ZP_05426643.1| transcription termination factor NusA [Enterococcus faecalis T2] gi|307279086|ref|ZP_07560144.1| transcription termination factor NusA [Enterococcus faecalis TX0860] gi|255968929|gb|EET99551.1| transcription termination factor NusA [Enterococcus faecalis T2] gi|306504211|gb|EFM73423.1| transcription termination factor NusA [Enterococcus faecalis TX0860] Length = 399 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 153/404 (37%), Positives = 239/404 (59%), Gaps = 8/404 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + Sbjct: 2 SKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + Sbjct: 302 SKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQ------E 355 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 V E + ++ ++ + E EE + Sbjct: 356 VAEVAEEMDEAIIHSD-MTADDYENLATEEAVVEAEITEELPEQ 398 >gi|291523276|emb|CBK81569.1| transcription termination factor NusA [Coprococcus catus GD/7] Length = 348 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 151/341 (44%), Positives = 226/341 (66%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL++ D + EK I +D++L + +S+ A ++ YG +IRV +N ETG++ +F Sbjct: 5 KELIKALDDIEKEKGISKDILLEAIENSLVAACKNEYGKADNIRVTMNRETGEVKVFADK 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEVE+ +IS+ AR ++ D G +V + P +FGR+A Q AKQV++QK+RE E Sbjct: 65 TVVEEVEDPEMEISVADARLKNKFYDPGDIVHVEIVPKNFGRIAAQKAKQVVVQKIREEE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ + +I++G V+R N+ V+LG D V+ +E + E +P DR+K YI Sbjct: 125 RKSLYNEYYGREKDIVTGVVQRYNGKNISVNLGKVDAVLTENEQVKGEVFKPTDRIKLYI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GP+V +SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV S++ Sbjct: 185 VEVKNTTKGPKVTVSRTHPELVKRLFEAEVTEVRDGTVEIKSIAREAGSRTKIAVSSNNP 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVGM G+RV A+V ELR EKIDI+ WS D A + NAL PA V V +D + Sbjct: 245 NVDPVGACVGMNGARVNAIVDELRGEKIDIINWSEDPAVLIENALSPAKVVSVDVDPEEK 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 305 SAAVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQA 345 >gi|312898335|ref|ZP_07757725.1| transcription termination factor NusA [Megasphaera micronuciformis F0359] gi|310620254|gb|EFQ03824.1| transcription termination factor NusA [Megasphaera micronuciformis F0359] Length = 375 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 222/362 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + ++ EK + DV+ + + A + Y + V ++ TGD S+ Sbjct: 2 NKELLSAIEYLSKEKGVTADVICDSLEAVLITAYKKEYDGNPNATVRLDRLTGDYSIVSP 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV + +ISL+ AR D + G + + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVAEVADEENEISLEDARAIDKGYEEGDEILVDVTPKNFGRIAAQAAKQVMIQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF + +II+G ++R+E NV +DLG ++ V+ E I E G R+K Y Sbjct: 122 ERNIVYDEFYGRTDDIITGIIQRIEQKNVYIDLGKAEAVLPYSEQIPTEEYTVGQRIKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR +G Q+ LSRTHP + +LF +EVPEIY+G+V++ +V+R+PG R+K+AV+S D Sbjct: 182 VVEVRNSPKGAQIQLSRTHPGLLKRLFELEVPEIYDGVVELHSVAREPGKRSKIAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGACVG +G+RVQ +V EL++EKIDIV W D A ++ NAL PA V V +DE Sbjct: 242 PNVDCVGACVGPKGARVQNIVMELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEGA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + ++ A Sbjct: 302 KSSVVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAEDGDVATGDDDILAEFDA 361 Query: 366 IN 367 ++ Sbjct: 362 VD 363 >gi|197121571|ref|YP_002133522.1| NusA antitermination factor [Anaeromyxobacter sp. K] gi|220916334|ref|YP_002491638.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|196171420|gb|ACG72393.1| NusA antitermination factor [Anaeromyxobacter sp. K] gi|219954188|gb|ACL64572.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 557 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 193/501 (38%), Positives = 279/501 (55%), Gaps = 51/501 (10%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++ Sbjct: 4 NVNLNLILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQV 63 Query: 66 LEVVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM--------------- 104 L +V + + + + VA ++ ++ G + P+ Sbjct: 64 LTIVPDPTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRVEDEAEARAQDEQWG 123 Query: 105 ----------DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNV Sbjct: 124 DLLKLKTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNV 183 Query: 155 IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 IVDLG ++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF M Sbjct: 184 IVDLGRAEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEM 243 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKI Sbjct: 244 EVPEIAEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKI 303 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV W D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+ Sbjct: 304 DIVPWDEDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQV 363 Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 TGW +DI +E R K+ E AI + E +L A GF +++A Sbjct: 364 TGWKLDINSES-----RVKEMREFATESFGAIGIPEQTQEMLYAHGFRKAQDVANAAPEM 418 Query: 395 IASIEGFDEETAVEIQGRARE------------YLEGIDITLQKKIR---ELGVSEELCS 439 + GF + ++Q RARE E + + R L E Sbjct: 419 LTQFPGFTMDMIPDLQKRAREQSIEDAEKEMRLEQEREAARIAEARRHPDSLTQEERFAR 478 Query: 440 IPGIDSKIKVALGENGIKTME 460 + G+ K + G T+E Sbjct: 479 VRGVGEKTIEQMKLAGYPTVE 499 >gi|332704826|ref|ZP_08424914.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis Bay] gi|332554975|gb|EGJ52019.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis Bay] Length = 494 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 178/430 (41%), Positives = 275/430 (63%), Gaps = 6/430 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ + YG DI V + +TG+I +F Sbjct: 4 ELRKAIDQISKDRGIDRDLLVDTLEEAVRSSVVRKYGDELDIEVNFSEDTGEIEVFHYKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVE+ +IS++ AR DP + + + L D GR+A QSAKQVIIQ++R+AE+ Sbjct: 64 VVDEVEDPNTEISMEDARQHDPGVQMDDDIGFKLNIEDLGRIAAQSAKQVIIQRMRDAEQ 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+KD++GEI+SG ++R + I++LG ++ ++ R+E I +E + GDRV+ YI Sbjct: 124 EIIFEEYKDRMGEIVSGIIQRRDRSGWIINLGRTEALLPREEQIPKERYKRGDRVQGYII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E RGPQV+LSR+HP++M LF EVPE+ + +V++ V+RDPGSRAK+AV S D Sbjct: 184 NVLKEGRGPQVILSRSHPEYMSALFRREVPEVADSVVKIMGVARDPGSRAKVAVMSRDRD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q +V E R E+IDIVVW PD A + NAL PA++T++ +DE+ Sbjct: 244 VDPVGACVGIRGSRIQNIVQEFRGERIDIVVWKPDIADYARNALSPALITRITVDEEETL 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QL+LAIGR+GQNV+LAS+L GW IDI TE R + + Q Q N Sbjct: 304 LEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIFTES-----RYGELHAARQTLEQVAN 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V EI + GF +EE+A + ++ I G E ++ A + L Sbjct: 359 VVEINIERFLEAGFDSLEEVARAEDEDLLKIRGMSESKINDLHA-AIKLLAPSAYATPAD 417 Query: 428 IRELGVSEEL 437 + E + E++ Sbjct: 418 MTEGEIGEDV 427 >gi|257898238|ref|ZP_05677891.1| transcription termination factor NusA [Enterococcus faecium Com15] gi|257836150|gb|EEV61224.1| transcription termination factor NusA [Enterococcus faecium Com15] Length = 391 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 222/353 (62%), Gaps = 1/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQIKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 242 QNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V+VP QLSLAIG+RGQN RLA++LT IDI +E + + +K + Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMAEFYEKQEQQ 354 >gi|116333944|ref|YP_795471.1| transcription elongation factor NusA [Lactobacillus brevis ATCC 367] gi|116099291|gb|ABJ64440.1| Transcription elongation factor [Lactobacillus brevis ATCC 367] Length = 401 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 158/403 (39%), Positives = 233/403 (57%), Gaps = 4/403 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL D + EK ID+ VV+ + ++ A + Y ++ VE + GDI ++ + Sbjct: 2 SKELLGALDVLETEKGIDKQVVIDALEAALVSAYKRNYDQAQNVEVEFDQRKGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV++V + ++ L A + ++G + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KKVVDQVYDSRLEVGLDEALTINKGYELGDDIKFEVTPKNFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y ++ EI++G V+R + V V LG + V+ R + + E R DRVK Y Sbjct: 122 ERNIIYNQYSQYENEIVTGEVERQDSRFVYVSLGKVEAVMGRQDQMPNETYRIHDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTH + +LF EVPEIY+G V++ A++R+ G RAK+AV S++ Sbjct: 182 VTRVENATKGPQVFVSRTHADLLKRLFEQEVPEIYDGTVEIMAIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG VG RG RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + Sbjct: 242 PDIDPVGTSVGPRGQRVQTIVNELGGENMDIVEWTDDEAKFIANALNPAEVLDVIFDPNN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R EVIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + ++ Sbjct: 302 ERACEVIVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSESEASAIM--EADQAADEATT 359 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 V E A AE AD +++ A+ + +E+A Sbjct: 360 GATVSEDDATEPAAETVADDTTSEETPVND-ATTDVASDESAE 401 >gi|86157527|ref|YP_464312.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85774038|gb|ABC80875.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 557 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 193/501 (38%), Positives = 279/501 (55%), Gaps = 51/501 (10%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++ Sbjct: 4 NVNLNLILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQV 63 Query: 66 LEVVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM--------------- 104 L +V + + + + VA ++ ++ G + P+ Sbjct: 64 LTIVPDPTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRAEDEAEARAQDEQWG 123 Query: 105 ----------DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNV Sbjct: 124 DLLKLKTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNV 183 Query: 155 IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 IVDLG ++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF M Sbjct: 184 IVDLGRAEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEM 243 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKI Sbjct: 244 EVPEIAEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKI 303 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV W D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+ Sbjct: 304 DIVPWDEDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQV 363 Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 TGW +DI +E R K+ E AI + E +L A GF +++A Sbjct: 364 TGWKLDINSES-----RVKEMREFATESFGAIGIPEQTQEMLYAHGFRKSQDVANAAPEM 418 Query: 395 IASIEGFDEETAVEIQGRARE------------YLEGIDITLQKKIRE---LGVSEELCS 439 + GF + ++Q RARE E + + R L E Sbjct: 419 LTQFPGFTMDMIPDLQKRAREQSIEDAEKEMRLEQEREAARIAEARRHPDTLTQEERFAR 478 Query: 440 IPGIDSKIKVALGENGIKTME 460 + G+ K + G T+E Sbjct: 479 VRGVGEKTIEQMKLAGYPTVE 499 >gi|303256975|ref|ZP_07342989.1| transcription termination factor NusA [Burkholderiales bacterium 1_1_47] gi|330999163|ref|ZP_08322882.1| transcription termination factor NusA [Parasutterella excrementihominis YIT 11859] gi|302860466|gb|EFL83543.1| transcription termination factor NusA [Burkholderiales bacterium 1_1_47] gi|329575363|gb|EGG56907.1| transcription termination factor NusA [Parasutterella excrementihominis YIT 11859] Length = 499 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 174/512 (33%), Positives = 299/512 (58%), Gaps = 31/512 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL--YGTMSDIRVEINPETGDISLFRL 65 +LL + + +A+EK++D+ VVL+ + ++ A + G +DI V+++P TGD ++R Sbjct: 4 DLLTMVEVLAHEKNVDQSVVLAALESALASAVKKAEFPGEDADIVVKVDPTTGDQKVWRQ 63 Query: 66 LEVVEE---VENYTCQISLKVARDRDPS---IDIGGVVSDPLPPMDF-GRVAVQSAKQVI 118 VV + ++ QI A++ +++G V PLP ++ GR AKQVI Sbjct: 64 WLVVPDEQGLQEPDRQILQWEAKEDYSDQGEMNVGDYVRKPLPDVNVTGRRFATDAKQVI 123 Query: 119 IQKVREAERDRQYLEFKDKVGEI--ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 IQ++REAER++ EF ++ ++ ++G VKR + + I+++G D + R + I ENL Sbjct: 124 IQRLREAERNQLLNEFLERYKDVKVVTGQVKRFDKSDAIIEIGRIDARLPRHQMIPMENL 183 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 RPGDRV++Y+ + R Q+ LSRT +F+ +L VPEI G++++K ++RDPG R Sbjct: 184 RPGDRVRAYVLKIDPTSRQQQITLSRTCNEFLGELMRQVVPEINEGLLEIKGIARDPGIR 243 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV D IDP+G+C+G++GSR+Q+V EL +E+IDI+ W+ A +V++AL PA + Sbjct: 244 AKVAVQVKDKRIDPIGSCIGVKGSRIQSVSGELMNERIDIIRWADQPAEYVMSALSPATI 303 Query: 297 TKVVLDEDVGRIEVIVPK-EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +++ ED ++EV+ P + +AIG G N RLAS+LTGW I+++ +++ + R+ + Sbjct: 304 SSIIVHEDEHKVEVVTPDLDNSKIAIGSNGVNKRLASELTGWEIEVMDDDQAAKKREDEI 363 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R Q +++DE +A +L+ G +EE+A + E+ SIE FDE+T E++ RAR Sbjct: 364 APRRQELCDRLDIDEEVAQVLIENGIETLEEVAYLPEEELLSIEQFDEDTVKELRSRART 423 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L + ++ ++ + L +PG+ +I L GIKT++ LA S D+L+ + Sbjct: 424 ALLTSALEREELLK--WADKSLVDLPGMTHEIANKLKPAGIKTLDQLADLSTDELVEMT- 480 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 G D+ ++I AR Sbjct: 481 ----------------GIDHDKAAALITKARE 496 >gi|313893742|ref|ZP_07827309.1| transcription termination factor NusA [Veillonella sp. oral taxon 158 str. F0412] gi|313441756|gb|EFR60181.1| transcription termination factor NusA [Veillonella sp. oral taxon 158 str. F0412] Length = 358 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 223/353 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 VDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|328957408|ref|YP_004374794.1| transcription elongation factor NusA [Carnobacterium sp. 17-4] gi|328673732|gb|AEB29778.1| transcription elongation factor NusA [Carnobacterium sp. 17-4] Length = 425 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 143/367 (38%), Positives = 224/367 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALEALEQEKGISKEFVIEALEVALVSAYKRNYDQAQNVEVEFDLKKGNIHVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+ V + ++ ++ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVVDVVYDSRLEVGIEEALEINKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y Sbjct: 122 ERNIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + Sbjct: 182 VTKVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSRE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E Sbjct: 242 EHIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNESN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + + + Sbjct: 302 GSCLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMEAINLAKEETGLEKDAKY 361 Query: 366 INVDEII 372 V E I Sbjct: 362 AEVIETI 368 >gi|257875536|ref|ZP_05655189.1| transcription termination factor NusA [Enterococcus casseliflavus EC20] gi|257809702|gb|EEV38522.1| transcription termination factor NusA [Enterococcus casseliflavus EC20] Length = 404 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 147/349 (42%), Positives = 226/349 (64%), Gaps = 1/349 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K + Sbjct: 122 ERNIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVG CVG +G RVQA+V EL+ E +DIV W+ DSA F+ NAL PA V+ V+ D D Sbjct: 242 ANVDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDSAIFIANALNPAEVSDVIFDVDN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K Sbjct: 302 PKACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAK 350 >gi|282848827|ref|ZP_06258220.1| transcription termination factor NusA [Veillonella parvula ATCC 17745] gi|294791739|ref|ZP_06756887.1| transcription termination factor NusA [Veillonella sp. 6_1_27] gi|294793600|ref|ZP_06758737.1| transcription termination factor NusA [Veillonella sp. 3_1_44] gi|282581481|gb|EFB86871.1| transcription termination factor NusA [Veillonella parvula ATCC 17745] gi|294455170|gb|EFG23542.1| transcription termination factor NusA [Veillonella sp. 3_1_44] gi|294456969|gb|EFG25331.1| transcription termination factor NusA [Veillonella sp. 6_1_27] Length = 358 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 223/353 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 IDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|222151100|ref|YP_002560254.1| transcription termination-antitermination factor [Macrococcus caseolyticus JCSC5402] gi|222120223|dbj|BAH17558.1| transcription termination-antitermination factor [Macrococcus caseolyticus JCSC5402] Length = 353 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL D + EKSI R+V++ + ++ A + Y + +++RVE+N + G ++ Sbjct: 3 NNELLNAIDFLEKEKSIPREVLIETIEAALITAYKKNYNSANNVRVELNMDNGAYRVYSR 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N ++SL+ A +P+ +IG + + + P DFGRV+ Q+AKQ ++Q++R+A Sbjct: 63 KNVVEEVMNSREEVSLETALLSNPAYEIGDIYEEDVTPKDFGRVSAQAAKQAVLQRLRDA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF DK +I++G + RV++ V V LG ++ V+ E E RP +R+K Y Sbjct: 123 ERGILYNEFIDKEDDIMTGIIDRVDHRYVYVTLGKTEAVLSEAERSPNEVYRPTERIKVY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 183 VNKVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFDGTVVVKSVAREAGDRSKISVYSDN 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID VGACVG +G+RV+AVV EL EKIDIV WS D+ TFV NAL P+ V V++DE Sbjct: 243 PDIDAVGACVGAKGARVEAVVEELGGEKIDIVEWSADTKTFVKNALSPSQVVDVLVDEAN 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG++GQN RLA++LTGW IDI +E + Sbjct: 303 QSTTVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSETDAKE 346 >gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [NC10 bacterium 'Dutch sediment'] Length = 433 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 172/431 (39%), Positives = 258/431 (59%), Gaps = 14/431 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++LLQ+ + V EK ID V++ ++ +I A+R G D+RVE + + L+ + Sbjct: 3 IDLLQVIEQVGREKEIDSAVLIEAVSAAILSASRKTLGAALDLRVEFDQRSRCFMLYAVR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE+V N +I++ A+ +P +G L +FGR+A Q+AKQVIIQ+V+EAE Sbjct: 63 KVVEQVVNPHVEIAIDEAQQLNPEAQLGDETKTELKAKEFGRIAAQTAKQVIIQRVKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + FK +VGE++ G V+RV GNVIV+LG ++ ++ E + RE+ R GDR+++Y+ Sbjct: 123 RESVFQAFKARVGELVGGVVQRVAKGNVIVNLGKAEAILPPREQLPREDYRVGDRIRAYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV++ RG Q++LSRTHP + KL +EVPEIY GIV++KAVSRD G RAK+AV S DS Sbjct: 183 LDVKKLPRGSQIVLSRTHPGLLAKLLEIEVPEIYEGIVEIKAVSRDAGERAKVAVASRDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG RGSR+QA+V EL EKID++ W D A+FV +AL PA + V + ++ Sbjct: 243 NVDPVGACVGYRGSRIQAIVRELMGEKIDVIAWKDDPASFVKSALAPADIESVEVVQETH 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ------ 360 + V+V QLSLAIG+RGQN RLA++L GW +D+ E ++ + Sbjct: 303 TLHVLVADGQLSLAIGKRGQNARLAAKLLGWKVDVRGRGEIQKASEERLQPEFEPVASTV 362 Query: 361 --------FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 + V E +A L+ G +LA + +EG +TA ++ Sbjct: 363 EGRAGTDLRLAEVPGVGEKLADRLIEAGVDSCRKLADASDEALVQVEGIGPKTAQKLIEA 422 Query: 413 AREYLEGIDIT 423 A+ L D Sbjct: 423 AKAALALRDAE 433 >gi|269797844|ref|YP_003311744.1| NusA antitermination factor [Veillonella parvula DSM 2008] gi|269094473|gb|ACZ24464.1| NusA antitermination factor [Veillonella parvula DSM 2008] Length = 358 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 222/353 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + + Sbjct: 4 ELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKKQ 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAER Sbjct: 64 VVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E R GDR+K YI Sbjct: 124 SVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIVTETYREGDRIKCYIV 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D + Sbjct: 184 EVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 244 IDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 304 SYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|49316|emb|CAA79231.1| ORF2 [Bacillus subtilis subsp. subtilis str. 168] Length = 371 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 147/342 (42%), Positives = 225/342 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+A +V+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTANEVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARE 345 >gi|81428862|ref|YP_395862.1| transcription elongation factor NusA [Lactobacillus sakei subsp. sakei 23K] gi|78610504|emb|CAI55555.1| Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) [Lactobacillus sakei subsp. sakei 23K] Length = 405 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 149/421 (35%), Positives = 236/421 (56%), Gaps = 18/421 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK + +++V+ + ++ A + YG ++ VE + + G+I ++ + Sbjct: 2 SKEMLGALDALEQEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDQKKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV +EV + ++S + A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTDEVFDSRLEVSYQDALEINKAYEVGDTIRFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI+ G V+R + + V+LG + V+ + + I E DR+K Y Sbjct: 122 ERSIIYNEYSQYENEIMQGIVERRDNKFIYVNLGKIEAVLSKQDQIPNEVYNAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTHP + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VSKVENTTKGPQVFVSRTHPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVRSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-D 304 ++DPVG CVG +G RVQ VV EL E +DIV W D + ++ NAL PA V V ++ + Sbjct: 242 PNVDPVGTCVGPKGQRVQLVVNELHGENMDIVKWEEDPSDYIANALNPAEVIAVQFNDGN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E F+ Sbjct: 302 EHTCTVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVE-------------FVD 348 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + ++ A V EGF + +A E A +I+ A ++ + Sbjct: 349 GDDSEDESA---VVEGFEEETITPETTEETVAVAPE-TAEVAEDIEQPAETVVDSEEQPQ 404 Query: 425 Q 425 + Sbjct: 405 E 405 >gi|242278479|ref|YP_002990608.1| transcription elongation factor NusA [Desulfovibrio salexigens DSM 2638] gi|242121373|gb|ACS79069.1| NusA antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 456 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 173/441 (39%), Positives = 277/441 (62%), Gaps = 17/441 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ + YG DI V N + G+I +++ Sbjct: 4 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQFKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEVE+ +I+L+ A++ DP++ I + L D GR+A QSAKQVIIQ++R+AE+ Sbjct: 64 VAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRDAEQ 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFK+++ EI+SG ++R + I++LG ++ V+ + E I RE + GDRV+++I Sbjct: 124 EIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGRTEAVLPKGEQIPRERYKRGDRVQAFII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++E RGPQ+ +SR+HP +M LF EVPE+ + V++ V+RDPG RAK+AV S D Sbjct: 184 DVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNSLDRD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q +V ELR E+IDIVVWS D A + NAL PA++T++ +DE+ Sbjct: 244 VDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDEEEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QL++AIGR+GQNV+LAS+L GW ID+ TE R + N ++ Q + Sbjct: 304 LEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFTES-----RYGEMNAASKGLDQLAS 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR--------AREYLEG 419 V EI ++ GF V ++A + SI G +++ A + +E Sbjct: 359 VAEIPVDNFLSAGFETVSQVANASEEILMSISGMTPSKVSDMKSAIMLLGIGDAEDAVEE 418 Query: 420 ID----ITLQKKIRELGVSEE 436 + + + ++ E +EE Sbjct: 419 TETEAPVEAEAQVEETSQTEE 439 >gi|310828067|ref|YP_003960424.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612] gi|308739801|gb|ADO37461.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612] Length = 411 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 160/425 (37%), Positives = 257/425 (60%), Gaps = 15/425 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ DA+ EK+ID++ ++ + SI+ A + YG + D+ V+++ +TG+I+++ Sbjct: 2 NAEFMRALDALEAEKNIDKEELIDAIEVSIESAYKKNYGNVQDVDVKLDRDTGEITVYAT 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+VEN QISL+ AR+ DP+ ++G V + P DFGR+A Q+AKQ+I+Q+++EA Sbjct: 62 RDIVEDVENLETQISLEEAREIDPTYEVGDVYRKVITPRDFGRIAAQNAKQLIVQRIKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ ++ E+++G + R+E GNV VD+GNS+G + E + E PG R+K Y Sbjct: 122 ERNMVYNEYLERQEEVMTGIINRIERGNVFVDIGNSEGCMPPMEQVPGEKYYPGQRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + VR+ +GPQ+ LSRTHP + +LF EVPEIY+GIV + ++SR+ GSR K+AV ++D Sbjct: 182 LLMVRKTTKGPQLRLSRTHPGLVKRLFETEVPEIYDGIVDIVSISREAGSRTKIAVKAND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SS+DPVGACVG +G RVQ ++ EL EKIDI+ +S D ++ NAL PA + +++ ++ Sbjct: 242 SSVDPVGACVGQKGIRVQNIINELNGEKIDIIKYSDDVREYLSNALSPAKIYRILPNKTE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +V QLSLAIG+ GQNVRLA++L W IDI ++ + + N Sbjct: 302 KTAIAVVDDFQLSLAIGKEGQNVRLAAKLASWKIDIKSKSDYERMLAE--NPDFDADYTN 359 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +E I L E + E+ I+ DE+ A + + + ++ Sbjct: 360 AGEEEDILDELKNE------------LDEVLDIQ-IDEDNAESLDNVLDDLVMTDELEDL 406 Query: 426 KKIRE 430 E Sbjct: 407 DDFFE 411 >gi|332184778|gb|AEE27032.1| Transcription termination protein NusA [Francisella cf. novicida 3523] Length = 489 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 165/517 (31%), Positives = 297/517 (57%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K+ Sbjct: 62 WHIVSENEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ +++K+G+I+ G +KR Y +IVDLGN ++G++ + + I+RE R GD+ Sbjct: 122 KNFEREKTARFYQNKIGDIVYGEIKRATYEILIVDLGNNAEGILPKKDLIARERYRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ + V + G V+LSR+ + LF +EVPE+ ++ + V R+PG R+K+ Sbjct: 182 IRACVESVECDDSGKPNTVMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASTLIGWKINVLSDAEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +++L + G+ + L +N I TMEDLA SVD+L Sbjct: 418 ILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + ++Q ++I+ AR W E Sbjct: 466 -----------LDIVDMDEEQATNLIMQARAP--WFE 489 >gi|254556874|ref|YP_003063291.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1] gi|300768187|ref|ZP_07078092.1| transcription termination factor NusA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180815|ref|YP_003924943.1| transcription elongation factor NusA [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045801|gb|ACT62594.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1] gi|300494251|gb|EFK29414.1| transcription termination factor NusA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046306|gb|ADN98849.1| transcription elongation factor NusA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 405 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 145/344 (42%), Positives = 218/344 (63%), Gaps = 1/344 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + Sbjct: 2 SKELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y Sbjct: 122 ERGIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ Sbjct: 182 VSKVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 ++DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D E+ Sbjct: 242 PNVDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTDDQAVFIANALNPAEVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S Sbjct: 302 ERGCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAS 345 >gi|28378676|ref|NP_785568.1| transcription elongation factor NusA [Lactobacillus plantarum WCFS1] gi|28271512|emb|CAD64417.1| transcription termination-antitermination factor NusA [Lactobacillus plantarum WCFS1] Length = 405 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 145/344 (42%), Positives = 218/344 (63%), Gaps = 1/344 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + Sbjct: 2 SKELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y Sbjct: 122 ERGIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ Sbjct: 182 VSKVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 ++DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D E+ Sbjct: 242 PNVDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTYDQAVFIANALNPAEVLDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S Sbjct: 302 ERGCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAS 345 >gi|326803576|ref|YP_004321394.1| transcription termination factor NusA [Aerococcus urinae ACS-120-V-Col10a] gi|326651243|gb|AEA01426.1| transcription termination factor NusA [Aerococcus urinae ACS-120-V-Col10a] Length = 455 Score = 461 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 154/447 (34%), Positives = 250/447 (55%), Gaps = 2/447 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+Q + + EK I +D ++ + ++ A + + ++ V + + G ++ + EV Sbjct: 5 LIQAFEMLEQEKGISKDTIIDAVQSALVFAYKRNFDQAQNVEVVFDDKKGSFHVYSVKEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI Q++REAER+ Sbjct: 65 VETVMDSNLEVSLEDALEINRGYEIGDKIRCEVTPEDFGRIAAQTAKQVITQRLREAERE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EF D ++++GTV+R + + V+LG + V+ + I E +P DR++ Y+ Sbjct: 125 IIYEEFIDYEDDLLTGTVERQDRRYIYVNLGKIEAVLTPEGQIPGEYFQPHDRIQVYVER 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +GPQ+ +SRTHP + +LF EVPEIY+G V++++++R+ G R+KLAV+S+D ++ Sbjct: 185 VENTTKGPQIYVSRTHPNMLKRLFEQEVPEIYDGTVEIRSIAREAGDRSKLAVYSNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG CVG RGSRVQ VV EL+ E +DI+ W D A + NAL PA V V + Sbjct: 245 DPVGTCVGPRGSRVQTVVNELKGENMDIIEWDEDPAVLIANALNPADVLAVHFVPNEQAC 304 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V+VP LSLAIG+RGQN RLA++LTG+ IDI +E E + + + T Q + Sbjct: 305 VVVVPDNHLSLAIGKRGQNARLAAKLTGYKIDIKSETEYEDYQDSEEYKETFLQDQNLEA 364 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 + L+ + +VEE + +AS EET + + + G + ++ I Sbjct: 365 ESEEVESLLND--VNVEEELMSDPAALASDSLVSEETDPLLSEVSADDQAGFENYDEENI 422 Query: 429 RELGVSEELCSIPGIDSKIKVALGENG 455 + E + + D L + G Sbjct: 423 HPDDMEEIVSDVEESDEVTYDELLDEG 449 >gi|290969147|ref|ZP_06560672.1| transcription termination factor NusA [Megasphaera genomosp. type_1 str. 28L] gi|290780653|gb|EFD93256.1| transcription termination factor NusA [Megasphaera genomosp. type_1 str. 28L] Length = 372 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 157/359 (43%), Positives = 225/359 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL ++ EK + DV+ + + A + VE+N ETGD + Sbjct: 2 NKELLNAIAFLSKEKGVSPDVICDSLEAVLITAYKKEPEANPMADVELNRETGDYRIVAA 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV N +I L AR ++ + +IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVAEVTNENEEIVLAEARKQNAAYEIGDMVKVDVTPHNFGRIAAQAAKQVMIQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ +II+G V+R+E V VDLG ++ V+ E I+ E G R+K Y Sbjct: 122 ERSIVYDEFYNRTDDIITGLVQRIENKIVYVDLGKAEAVLPVSEQIAEEQYYVGQRLKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +G Q+L+SRTHP + +LF +EVPEIY+G+V++K+V+R+PG R+K+AVFS D Sbjct: 182 VVEVRKTTKGAQILVSRTHPGLLKRLFELEVPEIYDGVVELKSVAREPGRRSKIAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++D VGACVG +G RVQ +VTEL++EKIDIV W D A ++ NAL PA V V +DE+ Sbjct: 242 TNVDCVGACVGPKGVRVQNIVTELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEEN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+ GQN RLA++LT W IDI +E + KD + Sbjct: 302 KMSAVIVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAKDGNSKDNEGEPDILSE 360 >gi|51246466|ref|YP_066350.1| transcription elongation factor NusA [Desulfotalea psychrophila LSv54] gi|50877503|emb|CAG37343.1| related to transcription termination factor (NusA) [Desulfotalea psychrophila LSv54] Length = 466 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 285/447 (63%), Gaps = 8/447 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L +I D ++ ++ ID+ +++S + ++++ AA+ +G+ DI V N E G++ +F+ Sbjct: 4 DLKRIIDQISRDRGIDKGILVSAIEEAVESAAKKKFGSRRDIEVRYNEEYGEVDVFQFRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I+L+ AR DP++ +G + + + D GR+A QSAKQVII ++++AE Sbjct: 64 VVEEIEDEQTEIALEDARILDPAVQLGDDLGEKMSNITDLGRIAAQSAKQVIINRMKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y +KD+VGE++SG V+R E GN++V+LG +D ++ ++ I + + GDR+++Y+ Sbjct: 124 RDVIYDMYKDRVGEVVSGIVQRFERGNMVVNLGRTDAILPKEHQIPKRTFKQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+ R Q++LSRT +F+ KLF MEVPE+ GIV+V VSR+PG RAK+AV SS+S Sbjct: 184 LEVRQTSRDCQLILSRTCDEFLEKLFQMEVPEMSEGIVRVLGVSREPGFRAKIAVSSSES 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA V+ V DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGERIDIVTWSPDIAKYVYNALAPAHVSMVRNDEERN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS+L G ID+ +E+ + + + Q ++ Sbjct: 304 SLLVVVPNDQLSLAIGRQGQNVRLASRLLGCRIDVKSEQRYANLQ----DPGYQSLLKIH 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE---YLEGIDIT 423 +DE +A L A G LA +I+++ + +EE A + A+ E +I+ Sbjct: 360 GIDEGLADQLWARGIVSTAVLAQTEIADLTVLRAINEEFAAALVKDAQANPFVAEETEIS 419 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVA 450 + ++ + + + V Sbjct: 420 SVEASEAENINADTVDAESSEEAVVVE 446 >gi|293374143|ref|ZP_06620477.1| transcription termination factor NusA [Turicibacter sanguinis PC909] gi|325837442|ref|ZP_08166424.1| transcription termination factor NusA [Turicibacter sp. HGF1] gi|292647246|gb|EFF65222.1| transcription termination factor NusA [Turicibacter sanguinis PC909] gi|325490974|gb|EGC93272.1| transcription termination factor NusA [Turicibacter sp. HGF1] Length = 351 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 150/343 (43%), Positives = 217/343 (63%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E + + EK I +D+++ ++ A + + ++++VEIN TG + L++ Sbjct: 2 NTKEFFAALELLEKEKGISKDIIIEAFEHALISAYKKNFNQATNVKVEINEVTGTVKLYQ 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVEEV QISL A +P G +++ + P DFGR+A Q+AKQV+ Q++R+ Sbjct: 62 QKTVVEEVTRPQEQISLDEAMRLNPHYQEGDIINFEVTPKDFGRIATQTAKQVVKQRIRQ 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD + EFKD+ GEI++G V + + +V VDLG + ++ E ++ + ++P R+K Sbjct: 122 AERDNLFQEFKDREGEIVTGIVVKDDGKHVFVDLGKIEALLPIREIMNPDEIKPNSRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + + +GP V +SR P + +LF +EVPEIY+G V++ +V+RD G R K+ V S Sbjct: 182 YISKIESKNKGPVVYVSRKDPNLIKRLFELEVPEIYDGTVEIMSVARDAGDRTKICVASE 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVGACVG G RVQ +V EL EKIDI+ +S D A V NAL PA V+KVV+DE Sbjct: 242 DENVDPVGACVGPSGQRVQNIVDELNGEKIDIIQFSKDPAVLVANALSPAQVSKVVVDEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP QLSLAIG+RGQN RLA+QLTGW IDI E E Sbjct: 302 KKATVVLVPDNQLSLAIGKRGQNARLAAQLTGWKIDIKPESEA 344 >gi|163791587|ref|ZP_02185988.1| transcription elongation factor NusA [Carnobacterium sp. AT7] gi|159873136|gb|EDP67239.1| transcription elongation factor NusA [Carnobacterium sp. AT7] Length = 425 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 150/402 (37%), Positives = 236/402 (58%), Gaps = 5/402 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + Sbjct: 2 SKEMLNALNALEQEKGIPKEFVIEALEVALISAYKRNYDQAQNVEVEFDLKKGNIHVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV + V + ++ L+ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVADVVYDSRLEVGLEEALELNKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y Sbjct: 122 ERNIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + Sbjct: 182 VTKVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSRE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E Sbjct: 242 ENIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNEAA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + Sbjct: 302 GSCLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMAAIQLAKEEAGLVKDAEY 361 Query: 366 INVDEII----AHLLVAEGFADVEELACVKISEIASIEGFDE 403 V E I + E VE+L + EI +E Sbjct: 362 AEVIETIESQEQEMNEEEIIQTVEDL-DTEFDEITIDADIEE 402 >gi|118498223|ref|YP_899273.1| transcription elongation factor NusA [Francisella tularensis subsp. novicida U112] gi|194324407|ref|ZP_03058180.1| transcription termination factor NusA [Francisella tularensis subsp. novicida FTE] gi|208780250|ref|ZP_03247592.1| transcription termination factor NusA [Francisella novicida FTG] gi|118424129|gb|ABK90519.1| transcription elongation factor [Francisella novicida U112] gi|194321472|gb|EDX18957.1| transcription termination factor NusA [Francisella tularensis subsp. novicida FTE] gi|208743899|gb|EDZ90201.1| transcription termination factor NusA [Francisella novicida FTG] gi|332678959|gb|AEE88088.1| Transcription termination protein NusA [Francisella cf. novicida Fx1] Length = 489 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 163/517 (31%), Positives = 298/517 (57%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+ Sbjct: 122 KNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ Sbjct: 182 IRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +++L + G+ + L +N I TMEDLA SVD+L Sbjct: 418 ILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + ++Q ++I+ AR W E Sbjct: 466 -----------LDIVDMDEEQATNLIMQARAP--WFE 489 >gi|78222794|ref|YP_384541.1| transcription elongation factor NusA [Geobacter metallireducens GS-15] gi|78194049|gb|ABB31816.1| NusA antitermination factor [Geobacter metallireducens GS-15] Length = 381 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 180/372 (48%), Positives = 250/372 (67%), Gaps = 2/372 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L I D + EK IDRD+V+ + ++ AA Y D+ NPE G++ LF + V Sbjct: 7 LKHIIDQIVKEKGIDRDIVVEALEQAVLSAANKKYRNTRDLEAHYNPEVGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +I L+ AR+ DP +++G + + F R+A Q+AKQVIIQKVREAER+ Sbjct: 67 VDEVMDSYKEIDLEEAREIDPDVEVGDSLGMKMDASGFTRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EFKD++GE+I+G V+R E G+++VDLG ++ ++ E RE R GDR+K+ I D Sbjct: 127 TIFNEFKDRIGELINGVVRRFEKGDLVVDLGRAEALLSNKEQAPREVYRQGDRIKALIMD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PGSR+K+AV+S DS + Sbjct: 187 IRMTPKGPQIILSRTHPGVLAKLFEAEVPEIAEGIVEIKSVVREPGSRSKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL+PA V+KV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDPARFACNALQPAAVSKVYIDEENKAL 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI-- 366 E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E + +F+ +A Sbjct: 307 EIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSETRAAEAELLEFSSYDGATEEAPQE 366 Query: 367 NVDEIIAHLLVA 378 V+E A L Sbjct: 367 PVEESEAQPLEQ 378 >gi|254375031|ref|ZP_04990511.1| transcription elongation factor [Francisella novicida GA99-3548] gi|151572749|gb|EDN38403.1| transcription elongation factor [Francisella novicida GA99-3548] Length = 489 Score = 459 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 163/517 (31%), Positives = 298/517 (57%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+ Sbjct: 122 KNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDK 181 Query: 182 VKSYIYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ Sbjct: 182 IRACVEAVESDESGKLSTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +++L + G+ + L +N I TMEDLA SVD+L Sbjct: 418 ILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + ++Q ++I+ AR W E Sbjct: 466 -----------LDIVDMDEEQATNLIMQARAP--WFE 489 >gi|116624262|ref|YP_826418.1| NusA antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|116227424|gb|ABJ86133.1| NusA antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 542 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 163/425 (38%), Positives = 249/425 (58%), Gaps = 6/425 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + Q + ++ EK ID +VL + D++ AAR Y + D +++P+TG I L+ + +V Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ + +++L AR D + ++GG V P GR++ Q+AKQVI QKVREAER+ Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + GE+++ T+KRVE + I+DLG ++ + + E E GDRV+ I Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGKTEAKLPKKEQSRLEGYSVGDRVRCIIKL 205 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP VL+SR P+ +++LF EVPEIY+G V ++ +R+ G R K+AV S D + Sbjct: 206 VDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRDV 265 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 D VGACVGM+G RVQ+++ ELR EKIDI+ +S DS F +AL PA V+++ V+D Sbjct: 266 DSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEKH 325 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ-----FF 362 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE + Sbjct: 326 MEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVESQMAALVAPGAPVSV 385 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + E +A L+ G A +E+L + E+ + G E+ IQ Y + Sbjct: 386 LIDYGMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQTAVVAYYSQFED 445 Query: 423 TLQKK 427 + Sbjct: 446 PASEN 450 >gi|148263956|ref|YP_001230662.1| transcription elongation factor NusA [Geobacter uraniireducens Rf4] gi|146397456|gb|ABQ26089.1| NusA antitermination factor [Geobacter uraniireducens Rf4] Length = 383 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 176/352 (50%), Positives = 239/352 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF Sbjct: 4 NFNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEF 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VVEEV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREA Sbjct: 64 VTVVEEVQDSYKEIDLDEAREIDPDVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+ Sbjct: 124 ERETIFNEFQERHGEVINGVVRRFEKGDLVVDLGRAEALLPHKEQAPREVYRQGDRVKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I ++R +GPQ+LLSRTHP + KLF EVPEI GIV++K+V R+PGSRAK+AV+S D Sbjct: 184 ITEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEIKSVVREPGSRAKIAVYSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED Sbjct: 244 SDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDN 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E + F Sbjct: 304 RSMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSETRVAEAELLQFAS 355 >gi|322418688|ref|YP_004197911.1| NusA antitermination factor [Geobacter sp. M18] gi|320125075|gb|ADW12635.1| NusA antitermination factor [Geobacter sp. M18] Length = 397 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 172/350 (49%), Positives = 236/350 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHTIDQIVKEKGIDKGIVVEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+ Sbjct: 67 VDEVQDSYREIELDEAREEDPDVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I + Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S D + Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDGDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDIARFACNALAPAVVTKVYVDEEDYAM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356 >gi|332686768|ref|YP_004456542.1| transcription termination protein NusA [Melissococcus plutonius ATCC 35311] gi|332370777|dbj|BAK21733.1| transcription termination protein NusA [Melissococcus plutonius ATCC 35311] Length = 396 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 143/356 (40%), Positives = 223/356 (62%), Gaps = 1/356 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+ EK I +++V+ + ++ A + YG ++ VE N + GDI ++ + Sbjct: 2 SKEILNALNALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFNNKKGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + +I+L+ A + + +IG V+ + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEIALEDALAINGAYEIGDVIHFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + +I+ G V+R + + V+LG + V+ + + + E + DR+K Y Sbjct: 122 ERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +++R+ G R+K+AV S D Sbjct: 182 VSKVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSIAREAGDRSKIAVRSID 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 +IDPVG CVG +G RVQA+V EL+ E +DIV W+ D ++ NAL PA V V+ D E+ Sbjct: 242 PNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPVVYISNALNPAQVVDVIFDPEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++VP QLSLAIG+RGQN RLA++LTG+ IDI E + ++ E Sbjct: 302 NKVCTIVVPDHQLSLAIGKRGQNARLAAKLTGFKIDIKAESNMADYYEQKQEEIED 357 >gi|282882060|ref|ZP_06290701.1| transcription termination factor NusA [Peptoniphilus lacrimalis 315-B] gi|300813713|ref|ZP_07094033.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298090|gb|EFA90545.1| transcription termination factor NusA [Peptoniphilus lacrimalis 315-B] gi|300512170|gb|EFK39350.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 430 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 149/345 (43%), Positives = 230/345 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + EK I +D++ + ++ + + YGT ++ V+++ ETG+I LF Sbjct: 2 NQEFIEALNEIEKEKGISKDIIFDALEQALVSSYKKNYGTSQNVIVKMDRETGEIKLFAY 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEVEN +ISL+ A+ D + +G + + P +FGR+A Q+AKQV+IQ++++A Sbjct: 62 KNIVEEVENPEIEISLEDAKKIDINFKLGDNYTKEIHPKNFGRIAAQTAKQVVIQRIKDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + +F K E+++G V+R +GNV VDLG ++G++ +E I E+ + GDR K Sbjct: 122 ERDVIFEDFTKKERELLTGLVQRSNHGNVYVDLGKTEGILLPNEQIKGESYKHGDRYKML 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQV+LSR+HP + +LF +EVPEI GIV++ ++SR+ GSR K+AVFS D Sbjct: 182 LLEVKKSSKGPQVILSRSHPDLIKRLFELEVPEINEGIVEIYSISREAGSRTKIAVFSLD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+GACVG +G RV A+V EL +EKIDIV++ D F+ N+L P+ V KV ++ED Sbjct: 242 PEVDPLGACVGYKGQRVNAIVDELSNEKIDIVIYQKDPQEFIANSLSPSKVEKVFINEDD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 IVP QLSLAIG+ GQNVRLA++LTGW IDI + + Sbjct: 302 KSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSMSQYEEY 346 >gi|220903347|ref|YP_002478659.1| transcription elongation factor NusA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867646|gb|ACL47981.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 449 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 175/429 (40%), Positives = 272/429 (63%), Gaps = 7/429 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DR++++ + D+++ + + D+ V N ETGDI +++ Sbjct: 2 NLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQF 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+ + V N QI L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R Sbjct: 62 KIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+VGEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + GDRV+ Sbjct: 122 DAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQ 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 182 ALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DPVGACVG+RGSR+Q +V EL E+IDIVVWS D AT+ NAL PA+V+++V+DE Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE R + N Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTET-----RYNEANAIGHGLE 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V E+ L+ G++ +++L E++ +++ ++ T Sbjct: 357 QVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKLTISASRIADLRSAINFLAPVVEET 416 Query: 424 LQKKIRELG 432 + ELG Sbjct: 417 PESSAVELG 425 >gi|116495058|ref|YP_806792.1| transcription elongation factor NusA [Lactobacillus casei ATCC 334] gi|191638561|ref|YP_001987727.1| transcription elongation factor NusA [Lactobacillus casei BL23] gi|239631347|ref|ZP_04674378.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066621|ref|YP_003788644.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|116105208|gb|ABJ70350.1| Transcription elongation factor [Lactobacillus casei ATCC 334] gi|190712863|emb|CAQ66869.1| Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) [Lactobacillus casei BL23] gi|239525812|gb|EEQ64813.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439028|gb|ADK18794.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327382599|gb|AEA54075.1| N utilization substance protein A [Lactobacillus casei LC2W] gi|327385797|gb|AEA57271.1| N utilization substance protein A [Lactobacillus casei BD-II] Length = 417 Score = 457 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 141/352 (40%), Positives = 214/352 (60%), Gaps = 2/352 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + Sbjct: 2 SKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y Sbjct: 122 ERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ Sbjct: 182 VTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 242 DAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEA 301 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + Sbjct: 302 NDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDEL 353 >gi|255655319|ref|ZP_05400728.1| transcription elongation protein [Clostridium difficile QCD-23m63] gi|296451304|ref|ZP_06893044.1| transcription termination factor NusA [Clostridium difficile NAP08] gi|296880344|ref|ZP_06904307.1| transcription termination factor NusA [Clostridium difficile NAP07] gi|296259910|gb|EFH06765.1| transcription termination factor NusA [Clostridium difficile NAP08] gi|296428585|gb|EFH14469.1| transcription termination factor NusA [Clostridium difficile NAP07] Length = 384 Score = 457 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 151/371 (40%), Positives = 237/371 (63%), Gaps = 5/371 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+ GQN RLA++LT W IDI +E + N + + Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEMLNLENSKK---I 358 Query: 364 QAINVDEIIAH 374 +A +V+ Sbjct: 359 EAEDVEAEFIE 369 >gi|212704654|ref|ZP_03312782.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098] gi|212671888|gb|EEB32371.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098] Length = 438 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 179/427 (41%), Positives = 272/427 (63%), Gaps = 8/427 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + + + D+ V N TGDI +++ Sbjct: 2 NLELKKAIDQISKDKGLDRDMLIKTLEDAVRTSVQRRFSEDMDVEVRYNDNTGDIEVYQF 61 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE EVEN I + AR DPS+ I V + D GR+A QSAKQVIIQ++R Sbjct: 62 KIVVEDGEVENEDTHIGITEARTHDPSVQIDDEVGFRVKVEDLGRIAAQSAKQVIIQRMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD++GEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + DRV+ Sbjct: 122 DAEQEIIYDEYKDRMGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRNDRVQ 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I DVR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 182 AIIIDVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+V+++V+DE Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPDIATYARNALAPAMVSRIVVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE R + N Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTET-----RYNEANAIGHGLE 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V E+ + L+ G+ ++ L E++ + +++ A +L + Sbjct: 357 QVASVAEVSMNQLLEAGYTSLDLLRQATDEELSDKLAISDSRIADLRS-AINFLAPVAEP 415 Query: 424 LQKKIRE 430 + E Sbjct: 416 EPRAAEE 422 >gi|188586067|ref|YP_001917612.1| NusA antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350754|gb|ACB85024.1| NusA antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 380 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 143/340 (42%), Positives = 229/340 (67%), Gaps = 1/340 (0%) Query: 18 YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 +K I++D++ + ++ A + + + ++RV + ETGD+ ++ +VVEEVEN Sbjct: 14 RDKGINKDILFEAIEAALISAYKRNFDSDKNVRVHMERETGDVRVYHQKQVVEEVENPKE 73 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL+ AR P ++ +V + + P +FGR+A Q+AKQV+IQ++REAER+ Y E+ DK Sbjct: 74 QISLEEARKISPGYEVDDLVEEEVTPKNFGRIAAQTAKQVVIQRIREAERELIYEEYVDK 133 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +II+G V+R+E NVI+DLG + ++ E + + GDR+K+Y+ +V++ + PQ Sbjct: 134 QDDIINGIVQRIEQKNVIIDLGKVEAILPPQEQMDTDEYNQGDRIKAYVVEVKKTTKEPQ 193 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 ++LSRTHP + +L +EVPEIY+G V++K ++R+ G R+K+AV+S +DPVG+CVG Sbjct: 194 IILSRTHPGLIKRLLELEVPEIYDGTVEIKGIAREAGYRSKVAVYSRHEEVDPVGSCVGN 253 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQ 316 +GSR+Q++V EL+ E ID++ WS D F+ N+L P+ V +V VLDE + V+VP Q Sbjct: 254 KGSRIQSIVDELKGENIDVITWSSDPVVFISNSLSPSKVLEVKVLDEQDQKARVVVPDHQ 313 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 LSLAIG+ GQN RLA++LT W IDI++E + + + Sbjct: 314 LSLAIGKEGQNARLAAKLTNWKIDILSESQLAEKGESSVE 353 >gi|254974853|ref|ZP_05271325.1| transcription elongation protein [Clostridium difficile QCD-66c26] gi|255092240|ref|ZP_05321718.1| transcription elongation protein [Clostridium difficile CIP 107932] gi|255313980|ref|ZP_05355563.1| transcription elongation protein [Clostridium difficile QCD-76w55] gi|255516660|ref|ZP_05384336.1| transcription elongation protein [Clostridium difficile QCD-97b34] gi|255649759|ref|ZP_05396661.1| transcription elongation protein [Clostridium difficile QCD-37x79] gi|260682915|ref|YP_003214200.1| transcription elongation protein [Clostridium difficile CD196] gi|260686513|ref|YP_003217646.1| transcription elongation protein [Clostridium difficile R20291] gi|306519864|ref|ZP_07406211.1| transcription elongation protein [Clostridium difficile QCD-32g58] gi|260209078|emb|CBA62223.1| transcription elongation protein [Clostridium difficile CD196] gi|260212529|emb|CBE03480.1| transcription elongation protein [Clostridium difficile R20291] Length = 384 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 151/371 (40%), Positives = 237/371 (63%), Gaps = 5/371 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVKS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+ GQN RLA++LT W IDI +E + N + + Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEMLNLENSKE---I 358 Query: 364 QAINVDEIIAH 374 +A +V+ Sbjct: 359 EAEDVEAEFID 369 >gi|160880908|ref|YP_001559876.1| NusA antitermination factor [Clostridium phytofermentans ISDg] gi|160429574|gb|ABX43137.1| NusA antitermination factor [Clostridium phytofermentans ISDg] Length = 354 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 148/351 (42%), Positives = 228/351 (64%), Gaps = 2/351 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + EK I ++V+L M +S+ A ++ +G +I+V I+ TG +S+F Sbjct: 4 NKELIEALNQIEKEKDISKEVLLDAMENSLVAACKNHFGKADNIKVYIDRTTGAVSVFAE 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+V++ +ISL A + P ++G +V + P +FGR+A Q AKQV++QK+R Sbjct: 64 RVVVEQVQDPVLEISLAEATMKFPKGKYELGDIVQVEVTPKNFGRIAAQKAKQVVVQKIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER + ++ + +I++G V+R NV ++LG D V+ +E I E+ RP DR+K Sbjct: 124 EEERKVLFNQYYGREKDIVTGIVQRYVGNNVSINLGKVDAVLMENEQIKGEHFRPTDRIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ GIV++K++SR+ G R K+AV S Sbjct: 184 LYVLEVKDTTKGPKITVSRTHPELVKRLFEAEVTEVKEGIVEIKSISREAGDRTKMAVSS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++DPVGACVG+ G+RV A+V EL EKIDIV WS D A + NAL PA V V + E Sbjct: 244 NDPNVDPVGACVGLNGARVNAIVNELGGEKIDIVNWSDDPAELIENALSPAKVVSVDVSE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +VIVP QLSLAIGR+GQN RLA++LTG+ IDI +E + + ++ Sbjct: 304 GEMSAKVIVPDYQLSLAIGRQGQNARLAARLTGYKIDIKSESQVYGSYYEE 354 >gi|260583738|ref|ZP_05851486.1| transcription termination factor NusA [Granulicatella elegans ATCC 700633] gi|260158364|gb|EEW93432.1| transcription termination factor NusA [Granulicatella elegans ATCC 700633] Length = 369 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 141/374 (37%), Positives = 221/374 (59%), Gaps = 7/374 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + + EK I ++VV++ + ++ A + YG ++ VE + + G + ++ + Sbjct: 2 SKEMIKALNILEEEKGISKEVVITALEAALVSAYKKNYGQAQNVEVEFDAKKGKMHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE V + T ++S+ A + + ++G + + P DFGR+A Q+AKQVI+Q++R+A Sbjct: 62 KEVVEYVFDSTLEVSIDEAHELHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + EI++G V R ++ V V+LG + + + I E P R+K Sbjct: 122 ERTNIYNEFIEYENEIMTGVVDRQDFRYVYVNLGKIVAGMTKQDQIPTEEYLPDQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GP + +SRTHP + +LF EVPEIY G+V++ +++R+ G RAK+AV S D Sbjct: 182 VSKVDNTTKGPLIFVSRTHPDLLKRLFEQEVPEIYEGVVEIVSIAREAGDRAKVAVRSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVG CVG RG RVQ +V EL E +DIV W+ D + ++ NAL PA V KV D D Sbjct: 242 TNLDPVGTCVGPRGQRVQNIVNELNGENMDIVEWNEDPSVYIANALNPAQVVKVDFDSDR 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Q + Sbjct: 302 NSCIVVVPDHQLSLAIGKRGQNARLAAKLTGFRIDIKSESAYQEYLD-------QLDSEL 354 Query: 366 INVDEIIAHLLVAE 379 V+E + + E Sbjct: 355 PTVEEDSSEEVQTE 368 >gi|187931005|ref|YP_001890989.1| transcription elongation factor NusA [Francisella tularensis subsp. mediasiatica FSC147] gi|187711914|gb|ACD30211.1| transcription termination factor NusA [Francisella tularensis subsp. mediasiatica FSC147] Length = 489 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 162/517 (31%), Positives = 297/517 (57%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+ Sbjct: 122 KNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ Sbjct: 182 IRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +++L + G+ + L +N I TMEDLA SVD+L Sbjct: 418 ILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + ++Q ++I+ AR W E Sbjct: 466 -----------LDIVDIDEEQATNLIMQARAP--WFE 489 >gi|313608989|gb|EFR84731.1| transcription termination factor NusA [Listeria monocytogenes FSL F2-208] Length = 330 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 140/327 (42%), Positives = 215/327 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334 VIVP QLSLAIG+RGQN RLA++L Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKL 330 >gi|220927907|ref|YP_002504816.1| NusA antitermination factor [Clostridium cellulolyticum H10] gi|219998235|gb|ACL74836.1| NusA antitermination factor [Clostridium cellulolyticum H10] Length = 382 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 157/362 (43%), Positives = 243/362 (67%), Gaps = 6/362 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ + + EK I +++++ + ++ A + +G+ +++V I+ TGD+ +F L Sbjct: 2 SAELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMNVKVNIDRVTGDVKVFAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E+ + IS+ A +P++DIG V + P FGR+A Q+AKQV++QK+REA Sbjct: 62 RKVAEDPDVEAMDISIGEAAKLNPTLDIGDYVESEVTPRSFGRIAAQTAKQVVVQKLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +K +I++G ++R+E NVIVDLG ++ V+ E E R +R+KSY Sbjct: 122 ERGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAVLGSTEQTPGEEYRFNERLKSY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ++LSRTHP + +LF +EVPEI++G V++K++SR+PGSR KLAV+S D Sbjct: 182 IVEVKKTTKGPQIMLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREPGSRTKLAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQA+V ELR EKIDI+ WS D ++ ++L PA V +V +DE+ Sbjct: 242 ENVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWSNDPKDYISSSLSPAKVVRVDVDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +K Q F + Sbjct: 302 KSAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRQSIEK------QLFDDS 355 Query: 366 IN 367 +N Sbjct: 356 LN 357 >gi|227534931|ref|ZP_03964980.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187687|gb|EEI67754.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 417 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 140/352 (39%), Positives = 213/352 (60%), Gaps = 2/352 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + Sbjct: 2 SKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y Sbjct: 122 ERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ Sbjct: 182 VTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 242 DAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEA 301 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 VIVP QLSLAIG++GQN RLA++LTG+ I I E E + Sbjct: 302 NDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIHIKPESEVEFVDDDEL 353 >gi|229824126|ref|ZP_04450195.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271] gi|229786480|gb|EEP22594.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271] Length = 397 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 142/345 (41%), Positives = 213/345 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + EK I R V+ + ++ A + Y ++ V+ + G I ++ + Sbjct: 2 SKELVKAMQVLEEEKGISRQVIKEALESALALAYKKNYDQAQNVEVQFDENKGTIKVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE + T +ISL+ A + + +IG + + P DFGR+A Q+AK VI+Q++REA Sbjct: 62 KEVVETNYDSTLEISLEEALKINRAYEIGDKIKFEVTPKDFGRIATQTAKHVIMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF V EI++GTV+R ++ + V++G + ++ E I E P R+K Y Sbjct: 122 ERENIFEEFSQYVDEIMTGTVERQDHRFIYVNIGRVEAIMPLGEQIPSEQFEPDQRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +GPQ+++SR H F+ +LF EVPEIY+G V+V A++R+ G RAK+AV S D Sbjct: 182 VAKVDKTSKGPQIVVSRAHNDFLRRLFEQEVPEIYDGTVEVMAIAREAGDRAKVAVRSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVG CVG RG RVQA+V EL E +DI+ W+ D F+ NAL PA V KV +E+ Sbjct: 242 KNIDPVGTCVGPRGQRVQAIVNELNGENMDIIEWNEDPVVFIQNALSPAQVIKVDFNEEA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+RGQN RLA++LT + IDI +E + Sbjct: 302 HACIVVVPDNQLSLAIGKRGQNARLAARLTTYKIDIKSESSYADY 346 >gi|253701581|ref|YP_003022770.1| transcription elongation factor NusA [Geobacter sp. M21] gi|251776431|gb|ACT19012.1| NusA antitermination factor [Geobacter sp. M21] Length = 382 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 174/350 (49%), Positives = 237/350 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+ Sbjct: 67 VEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I + Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS + Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEYAM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356 >gi|126698905|ref|YP_001087802.1| transcription elongation protein [Clostridium difficile 630] gi|255100326|ref|ZP_05329303.1| transcription elongation protein [Clostridium difficile QCD-63q42] gi|255306264|ref|ZP_05350436.1| transcription elongation protein [Clostridium difficile ATCC 43255] gi|115250342|emb|CAJ68164.1| Transcription elongation protein [Clostridium difficile] Length = 384 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 151/371 (40%), Positives = 237/371 (63%), Gaps = 5/371 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+ GQN RLA++LT W IDI +E + N + + Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEMLNLENSKE---I 358 Query: 364 QAINVDEIIAH 374 +A +V+ Sbjct: 359 EAEDVEAEFID 369 >gi|56707228|ref|YP_169124.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis SCHU S4] gi|110669698|ref|YP_666255.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis FSC198] gi|134301263|ref|YP_001121231.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis WY96-3418] gi|224456289|ref|ZP_03664762.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis MA00-2987] gi|254369913|ref|ZP_04985921.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874067|ref|ZP_05246777.1| transcription factor nusA [Francisella tularensis subsp. tularensis MA00-2987] gi|56603720|emb|CAG44682.1| N utilization substance protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320031|emb|CAL08065.1| N utilization substance protein A [Francisella tularensis subsp. tularensis FSC198] gi|134049040|gb|ABO46111.1| transcription factor NusA [Francisella tularensis subsp. tularensis WY96-3418] gi|151568159|gb|EDN33813.1| hypothetical protein FTBG_01505 [Francisella tularensis subsp. tularensis FSC033] gi|254840066|gb|EET18502.1| transcription factor nusA [Francisella tularensis subsp. tularensis MA00-2987] gi|282158336|gb|ADA77727.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis NE061598] Length = 489 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 163/517 (31%), Positives = 297/517 (57%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+ Sbjct: 122 KNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ Sbjct: 182 IRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ I+++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSIDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +++L + G+ + L +N I TMEDLA SVD+L Sbjct: 418 ILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + ++Q ++I+ AR W E Sbjct: 466 -----------LDIVDIDEEQATNLIMQARAP--WFE 489 >gi|197117688|ref|YP_002138115.1| transcription elongation factor NusA [Geobacter bemidjiensis Bem] gi|197087048|gb|ACH38319.1| transcription termination factor NusA [Geobacter bemidjiensis Bem] Length = 383 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 174/350 (49%), Positives = 237/350 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+ Sbjct: 67 VEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I + Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS + Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEYAM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356 >gi|303326256|ref|ZP_07356699.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3] gi|302864172|gb|EFL87103.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3] Length = 464 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 178/429 (41%), Positives = 275/429 (64%), Gaps = 7/429 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + + D+ V N +TGDI +++ Sbjct: 2 NLELKKAIDQISKDKGLDRDMLIDTLEDAVRTSVLRRFSEDMDVEVTYNDDTGDIEVYQF 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ V N QI+L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R Sbjct: 62 KIVVEDDDVANEDTQIALADAREHDPSVQLDDEMGFRVKVEDLGRIAAQSAKQVIIQRMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+VGEI+SG ++R + G +V+LG ++ ++ R+E I RE+ + GDRV+ Sbjct: 122 DAEQEIIYEEYKDRVGEIVSGIIQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQ 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 182 ALIIEVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSP+ AT+ NAL PA+V+++V+DE Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPEIATYARNALAPALVSRIVVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE R + N Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTET-----RYNEANAIGHGLE 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V E+ L+ G++ ++ L E+A +++ ++ T Sbjct: 357 QVASVAEVSIEALLEAGYSSLDALREASDEELADKLTISASRISDLRSAINFLAPVVEST 416 Query: 424 LQKKIRELG 432 + ELG Sbjct: 417 PESSAVELG 425 >gi|255524231|ref|ZP_05391190.1| NusA antitermination factor [Clostridium carboxidivorans P7] gi|296185352|ref|ZP_06853762.1| transcription termination factor NusA [Clostridium carboxidivorans P7] gi|255512056|gb|EET88337.1| NusA antitermination factor [Clostridium carboxidivorans P7] gi|296050186|gb|EFG89610.1| transcription termination factor NusA [Clostridium carboxidivorans P7] Length = 368 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G +++V +N E G+I Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYINQGGNNQNVKVTMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ V++EV + +ISL+ A+ DP+ DI VVS + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKTVIDEVFDEINEISLEEAKSIDPNYDIDDVVSIEVTPKKFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y +F +K +II+G V R + NV+VDLG ++ V+ +E + E D+ Sbjct: 122 IKEEERRIVYNDFIEKEDDIITGAVIRKDKNNVLVDLGKTEAVLGPNEQMPGEKYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V++K+++R+ GSR K+AV Sbjct: 182 IKLYIVEVKNTTKGAQIVISRTHPGLVKRLFELEVPEIFDGTVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ NAL PA V V L Sbjct: 242 NSNDENVDPMGACVGPKGIRVQNIVNELKNEKIDIIKWSKLPEEYIANALSPAKVIDVTL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + + + Sbjct: 302 DEENKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQVETVPEVETVSQAED 361 Query: 362 FMQAINV 368 ++ Sbjct: 362 ISDEEDI 368 >gi|225390157|ref|ZP_03759881.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme DSM 15981] gi|225043751|gb|EEG53997.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme DSM 15981] Length = 393 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 156/389 (40%), Positives = 241/389 (61%), Gaps = 5/389 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I ++ +L + +S+ A ++ +G ++RV INP+T D +++ Sbjct: 8 NKELLEAMEVLEKEKNISKETLLEAIENSLLTACKNHFGKADNVRVNINPDTCDFAVYME 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE E+ QISL A+ +P ++G V PL FGR+A Q+AK VI+QK+RE Sbjct: 68 KEVVETPEDDQLQISLVDAKMMNPKYEVGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K ++++G V+R+ NV ++LG D ++ E + E RP +RVK Y Sbjct: 128 ERSSLYKEYYMKEKDVMTGIVQRMLGKNVSINLGRVDAILNESEQVKGETFRPTERVKVY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR+K+AV S+D Sbjct: 188 ILEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRSKIAVMSND 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ GSRV ++V ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 248 PNVDPVGACVGLNGSRVNSIVNELRGEKIDIINWDENPAYLIENALSPAKVICVVADEEE 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + ++ Q +Q Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQA-----REMGLFEQMGLQY 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + E + E + D + A + ++ Sbjct: 363 GDAPEDTYEEEIQEDYQDYDSEAGQEDAD 391 >gi|302392348|ref|YP_003828168.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501] gi|302204425|gb|ADL13103.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501] Length = 376 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 245/353 (69%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL+Q + + +K+I ++++L + +++ A + +G+ ++ +EI+ E G+++++ Sbjct: 2 NIELIQALEDIEKDKNIPKEMLLDALKAALESAYKKNFGSKQNVEIEIDEENGEVNVYSN 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV+N ++SL+ AR+ DP+ + G VVS + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 REVVKEVDNPNLEMSLEEAREIDPNYEAGDVVSVEVTPANFGRIAAQTAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF D EII+G ++R NVIVDLG ++ ++ E I EN P +R+K Y Sbjct: 122 ERDIIYEEFADMEDEIITGIIQRNHKKNVIVDLGRTEAILIPPEQIPNENYEPSERIKIY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +L+SRTHP + +LF +EVPEI++G+V++KAV+R+ G R+K+AV S++ Sbjct: 182 IVEVKQTTKGPNILVSRTHPGLLKRLFELEVPEIHDGVVKIKAVAREAGFRSKIAVDSTE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DP+G+CVG G RVQAVV EL EKIDIV WS D A F+ NAL PA VT V +DE+ Sbjct: 242 AEVDPIGSCVGPNGMRVQAVVDELNGEKIDIVNWSEDPAEFIANALSPAEVTGVEVDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E + ++ Sbjct: 302 QVAVVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESEVDEEILESMDDV 354 >gi|222055779|ref|YP_002538141.1| NusA antitermination factor [Geobacter sp. FRC-32] gi|221565068|gb|ACM21040.1| NusA antitermination factor [Geobacter sp. FRC-32] Length = 380 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 176/353 (49%), Positives = 238/353 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF Sbjct: 4 NFNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEF 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VV+EV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREA Sbjct: 64 VTVVDEVQDSYKEIDLDEAREIDPEVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+ Sbjct: 124 ERETIFNEFQERQGEVINGVVRRFEKGDLVVDLGRAEALLSHKEQAPREVYRQGDRVKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I ++R +GPQ+LLSRTHP + KLF EVPEI GIV+VK V R+PGSRAK+AV+S D Sbjct: 184 ITEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEVKNVVREPGSRAKIAVYSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED Sbjct: 244 SDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDN 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E + F Sbjct: 304 RAMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSETRVAEAELLQFASY 356 >gi|199597100|ref|ZP_03210532.1| transcription elongation factor NusA [Lactobacillus rhamnosus HN001] gi|258508610|ref|YP_003171361.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG] gi|199591904|gb|EDY99978.1| transcription elongation factor NusA [Lactobacillus rhamnosus HN001] gi|257148537|emb|CAR87510.1| Transcription elongation factor NusA [Lactobacillus rhamnosus GG] gi|259649917|dbj|BAI42079.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG] Length = 402 Score = 454 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 215/353 (60%), Gaps = 2/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + Sbjct: 2 SKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y Sbjct: 122 ERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ Sbjct: 182 VTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--E 303 ++D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V + + Sbjct: 242 DAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDED 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + + Sbjct: 302 NDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELS 354 >gi|89257073|ref|YP_514435.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica LVS] gi|115315429|ref|YP_764152.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica OSU18] gi|156503283|ref|YP_001429348.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009460|ref|ZP_02274391.1| transcription termination factor NusA [Francisella tularensis subsp. holarctica FSC200] gi|290954351|ref|ZP_06558972.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica URFT1] gi|295312215|ref|ZP_06803015.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica URFT1] gi|89144904|emb|CAJ80249.1| N utilization substance protein A [Francisella tularensis subsp. holarctica LVS] gi|115130328|gb|ABI83515.1| N utilization substance protein A [Francisella tularensis subsp. holarctica OSU18] gi|156253886|gb|ABU62392.1| transcription termination factor NusA [Francisella tularensis subsp. holarctica FTNF002-00] Length = 489 Score = 454 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 161/517 (31%), Positives = 296/517 (57%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEIKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ +++K+G+I+ G +KR Y ++VDLGN ++G++ + + I+RE R GD+ Sbjct: 122 KNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ + V ++ G ++LSR+ + LF +EVPE+ ++ + V R+ G R+K+ Sbjct: 182 IRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREHGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +++L + G+ + L +N I TMEDLA SVD+L Sbjct: 418 ILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + ++Q ++I+ AR W E Sbjct: 466 -----------LDIVDIDEEQATNLIMQARAP--WFE 489 >gi|301300268|ref|ZP_07206477.1| transcription termination factor NusA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214374|gb|ADJ78790.1| N utilization substance protein A [Lactobacillus salivarius CECT 5713] gi|300852109|gb|EFK79784.1| transcription termination factor NusA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 375 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 145/353 (41%), Positives = 224/353 (63%), Gaps = 1/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + Sbjct: 2 SKELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ Sbjct: 62 KEVVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K Y Sbjct: 122 EREVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IY V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++ Sbjct: 182 IYKVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V DE+ Sbjct: 242 DGVDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + Sbjct: 302 EHACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADN 354 >gi|114566431|ref|YP_753585.1| transcription elongation factor NusA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337366|gb|ABI68214.1| NusA antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 378 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 145/372 (38%), Positives = 233/372 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+Q + + E+ I + ++ + ++ A + +G ++ VE N G++ +F + Sbjct: 4 DLVQALNDIEKERGIPKRALIEAIKSALSTAYKKNFGIAQNVSVEFNEINGEVKVFSQKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 + +EV++ ++SL+ A++ P + +V P DFGR+A Q+AKQV+IQK+REAER Sbjct: 64 ISDEVKDPRLEMSLEEAQELYPDCKVEDLVYVEATPSDFGRIAAQTAKQVVIQKLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF ++ GEII+GT++R+E V + LG ++G++ + I E G R+K+YIY Sbjct: 124 SLIYEEFLEREGEIITGTIQRLESKTVYISLGRTEGIMMASDQIFGERYEVGQRIKAYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP + +SR+HP F+ +LF MEVPEIY+G+V++K+++R+ G+R+K+AV+S D Sbjct: 184 EVKNTSKGPNIFVSRSHPYFLRRLFEMEVPEIYDGVVEIKSIAREAGARSKIAVYSLDDK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG RG RVQ +V+EL EKIDI+ + D ++ NAL P+ V V ++E Sbjct: 244 IDSVGACVGPRGLRVQNIVSELGGEKIDIIKYDKDPERYISNALSPSRVVAVNINETDKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+ GQN RLA++LTGW +DI +E + S + E ++ Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKVDIRSESQMSDYYNEIDAEMDDEVLEQDW 363 Query: 368 VDEIIAHLLVAE 379 +E + E Sbjct: 364 AEENTGETKIDE 375 >gi|326204063|ref|ZP_08193924.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325985830|gb|EGD46665.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 382 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 154/368 (41%), Positives = 245/368 (66%), Gaps = 2/368 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ + + EK I +++++ + ++ A + +G+ +++V I+ TGD+ ++ L Sbjct: 2 SAELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMNVKVNIDRVTGDVKVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E+ + IS+ A +P+++IG V + P FGR+A Q+AKQV++QK+REA Sbjct: 62 RKVAEDPDMEAMDISVGEAAILNPTLEIGDYVESEVTPRSFGRIAAQTAKQVVVQKLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +K +I++G ++R+E NVIVDLG ++ V+ E E R +R+KSY Sbjct: 122 ERGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAVLGPTEQTPGEEYRFNERLKSY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SRTHP + +LF +EVPEI++G V++K++SR+PGSR K+AV+S D Sbjct: 182 IVEVKKTTKGPQIMISRTHPGLVKRLFELEVPEIHDGTVEIKSISREPGSRTKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQA+V ELR EKIDI+ WS D ++ ++L PA V +V +DED Sbjct: 242 ENVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWSNDPRDYISSSLSPAKVVRVDVDEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF--NERTQFFM 363 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +K + F+ Sbjct: 302 KSAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRQSIEKQLFDDSIGSGFL 361 Query: 364 QAINVDEI 371 + D+I Sbjct: 362 DETDPDDI 369 >gi|46578925|ref|YP_009733.1| transcription elongation factor NusA [Desulfovibrio vulgaris str. Hildenborough] gi|120603474|ref|YP_967874.1| transcription elongation factor NusA [Desulfovibrio vulgaris DP4] gi|46448337|gb|AAS94992.1| N utilization substance protein A [Desulfovibrio vulgaris str. Hildenborough] gi|120563703|gb|ABM29447.1| NusA antitermination factor [Desulfovibrio vulgaris DP4] gi|311232783|gb|ADP85637.1| transcription termination factor NusA [Desulfovibrio vulgaris RCH1] Length = 428 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 179/424 (42%), Positives = 272/424 (64%), Gaps = 10/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL + D ++ +K ++RD++++ + ++++ + YG D+ V N E+G+I +++ Sbjct: 2 SMELKKAIDQISKDKGLERDMLVATLEEAVRTSVVRKYGDDIDVEVSYNDESGEIEVYQF 61 Query: 66 LEVVEEVENYT----CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV E+++ I L+ AR DPS+ I + L D GR+A QSAKQVIIQ+ Sbjct: 62 KIVVAELDDEDEDGNAHIVLEEARKHDPSVQIDDEMGFRLKVEDLGRIAAQSAKQVIIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AE++ Y EFKD+ GEIISG ++R + I++LG ++ ++ ++E I RE+ + GDR Sbjct: 122 MRDAEQELIYDEFKDRRGEIISGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I +VR+E RGPQV++SR+H +M LF EVPE+ +G VQ+ V+RDPGSRAK+AV Sbjct: 182 VQAIIIEVRKEGRGPQVIVSRSHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S + +DPVGACVG+RGSR+Q VV ELR E+IDIVVWSP+ AT+ NAL PA+++++V+ Sbjct: 242 LSRERDVDPVGACVGIRGSRIQNVVQELRGERIDIVVWSPEIATYARNALSPAVISRIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Sbjct: 302 DEEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRG 356 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 Q +V EI V GF +E L E+AS G D+ +++ A +L Sbjct: 357 LEQIASVAEISIEQFVTAGFQSIERLREASDEELASGLGIDDNRIADLRA-AINFLSPAP 415 Query: 422 ITLQ 425 Sbjct: 416 SASD 419 >gi|95929628|ref|ZP_01312370.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95134325|gb|EAT15982.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 388 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 167/346 (48%), Positives = 241/346 (69%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + D V +K +DRD+++ + ++ AA Y ++ N E G++ LF + V Sbjct: 5 LNHVIDQVVKDKGVDRDILVEALESAVLSAANKKYRNTRELEAHYNTEQGEVELFEFVTV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ +I L+ AR+ DP ++ G + + F R+A Q+AKQVIIQKVREAER+ Sbjct: 65 VDEVQDSYKEIDLEEAREIDPDVECGDSLGMKMDSGSFSRIAAQTAKQVIIQKVREAERE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EFKD+VGE+++G V+R E G++IVDLG ++ ++ E + REN R DRV++YI + Sbjct: 125 GVYNEFKDRVGELVNGIVRRYERGDLIVDLGRAEALLPHREQVPRENYRQADRVRAYIAE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+ +GPQ++LSRTHP +++LF EVPEI GIV++ + SR+PGSRAK+AV S D + Sbjct: 185 VKMSPKGPQIILSRTHPSLVIELFKTEVPEISEGIVEIVSCSREPGSRAKIAVVSHDPDV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ W+PD A F +AL PA V++V +D + + Sbjct: 245 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWTPDMARFACSALAPADVSRVYVDNEEQAM 304 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 E+IVP +QLSLAIG++GQNVRLA++L GW IDI +E + Q++ Sbjct: 305 EIIVPDDQLSLAIGKKGQNVRLAARLIGWKIDIKSETRAAEIEQEE 350 >gi|90961545|ref|YP_535461.1| transcription elongation factor NusA [Lactobacillus salivarius UCC118] gi|227890633|ref|ZP_04008438.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC 11741] gi|90820739|gb|ABD99378.1| N utilization substance protein A [Lactobacillus salivarius UCC118] gi|227867571|gb|EEJ74992.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC 11741] Length = 375 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 145/353 (41%), Positives = 224/353 (63%), Gaps = 1/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + Sbjct: 2 SKELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ Sbjct: 62 KEVVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K Y Sbjct: 122 EREVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IY V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++ Sbjct: 182 IYKVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V DE+ Sbjct: 242 DGVDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDEN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + Sbjct: 302 EHACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADN 354 >gi|239626256|ref|ZP_04669287.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520486|gb|EEQ60352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 401 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 153/389 (39%), Positives = 233/389 (59%), Gaps = 6/389 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++ Sbjct: 8 NKELLEAMEVLEKEKNIAKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAE 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ +ISL A+ P D+G V PL FGR+A Q+AK VI+QK+RE Sbjct: 68 KTVVEQVEDDIMEISLADAKMLSPKYDLGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K ++++G V+R NV ++LG D ++ E + E RP +R+K Y Sbjct: 128 ERKVLYNEYYTKEKDVMTGIVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERIKVY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 188 VLEVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSND 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 248 SNVDPVGACVGLNGARVNAIVSELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEEE 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + A Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAREMGLFEQMGLQYGDAPA 367 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + +E +EE E Sbjct: 368 PSFEEDSFEE------DSLEETENYPEYE 390 >gi|302387320|ref|YP_003823142.1| transcription termination factor NusA [Clostridium saccharolyticum WM1] gi|302197948|gb|ADL05519.1| transcription termination factor NusA [Clostridium saccharolyticum WM1] Length = 400 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 221/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + E +I +D +L + +S+ A ++ +G +I+V IN ET D ++F Sbjct: 2 NKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNIKVSINRETCDFNVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL A+ DP D+G V+ P+ FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVETVEDPLLQISLAEAKMTDPKYDVGDVIHCPIDSKKFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R + ++ + E+++G V+R NV ++LG D ++ E + E + +R+K + Sbjct: 122 GRKSLFNDWYCQEREVVTGIVQRYLGRNVSINLGKVDAILNETEMVKGEVFKATERIKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 182 VLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE Sbjct: 242 ANVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEVS 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KEAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARE 345 >gi|160940464|ref|ZP_02087809.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC BAA-613] gi|158437044|gb|EDP14811.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC BAA-613] Length = 394 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 224/345 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++ Sbjct: 8 NKELLEAMEVLEKEKNISKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAE 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ ++SL A+ +P +IG V PL FGR+A Q+AK VI+QK+RE Sbjct: 68 KAVVENVEDDCLEMSLADAKMLNPKYEIGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K ++++G V+R NV ++LG D ++ E + E RP +RVK Y Sbjct: 128 ERKALYNEYYMKEKDVMTGVVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERVKVY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 188 VIEVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSND 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVGACVG+ GSRV ++V+EL+ EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 248 ANVDPVGACVGLNGSRVNSIVSELKGEKIDIINWDDNPAYLIENALSPAKVICVVADEEE 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAREM 352 >gi|331269630|ref|YP_004396122.1| NusA antitermination factor [Clostridium botulinum BKT015925] gi|329126180|gb|AEB76125.1| NusA antitermination factor [Clostridium botulinum BKT015925] Length = 348 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 146/348 (41%), Positives = 224/348 (64%), Gaps = 5/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ + EE +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKRI-EEDPLTINEISLEEAREFNPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D+ Sbjct: 121 IKEAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W D ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKDPEKYIANALSPARVVSVEI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DEENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEA 348 >gi|253682577|ref|ZP_04863374.1| transcription termination factor NusA [Clostridium botulinum D str. 1873] gi|253562289|gb|EES91741.1| transcription termination factor NusA [Clostridium botulinum D str. 1873] Length = 348 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 145/348 (41%), Positives = 223/348 (64%), Gaps = 5/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ + EE +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKRI-EEDPLTINEISLEEAREINPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D+ Sbjct: 121 IKEAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +V EL++EKIDI+ W D ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVNELKNEKIDIIKWDKDPEKYIANALSPARVVNVEI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DEENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEA 348 >gi|323485570|ref|ZP_08090915.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum WAL-14163] gi|323692918|ref|ZP_08107141.1| transcription termination factor NusA [Clostridium symbiosum WAL-14673] gi|323401109|gb|EGA93462.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum WAL-14163] gi|323503025|gb|EGB18864.1| transcription termination factor NusA [Clostridium symbiosum WAL-14673] Length = 412 Score = 452 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 155/430 (36%), Positives = 247/430 (57%), Gaps = 20/430 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + E +I +D++L + +S+ A ++ +G +++V IN ETGD S++ Sbjct: 2 NKELIEALNVLEKENNISKDILLEAIENSLLTACKNHFGKADNVKVTINRETGDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL A+ + D+G +V + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVESVEDPMLQISLAEAKMMNGRYDLGDIVHVQINSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ K ++++G V+R N+ +DLG D ++ E + E +P +R+K Y Sbjct: 122 ERKALFNDWYCKEKDVVTGIVQRYVNRNICIDLGKIDAILNESEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV+S++ Sbjct: 182 VLEVKDTNKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVYSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V V DED Sbjct: 242 PDVDPVGACVGLNGARVNAIVSELRGEKIDIINWDENPAYLIENALSPAKVIFVAADEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARES----------GLLDD 351 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 + + +GF E A + G DE A E A ++ + Sbjct: 352 LELG-------YEQGF---EGYAEEPFDSFSEEAGADENHAEEDGTAAFGDVDFAGNEAE 401 Query: 426 KKIRELGVSE 435 + + E E Sbjct: 402 EGLGEENYQE 411 >gi|258539789|ref|YP_003174288.1| transcription elongation factor NusA [Lactobacillus rhamnosus Lc 705] gi|257151465|emb|CAR90437.1| Transcription elongation factor NusA [Lactobacillus rhamnosus Lc 705] Length = 404 Score = 452 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 215/353 (60%), Gaps = 2/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + Sbjct: 2 SKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y Sbjct: 122 ERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ Sbjct: 182 VTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--E 303 ++D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V + + Sbjct: 242 DAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDED 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + + Sbjct: 302 NDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELS 354 >gi|323464620|gb|ADX76773.1| transcription termination factor NusA [Staphylococcus pseudintermedius ED99] Length = 392 Score = 452 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 158/397 (39%), Positives = 239/397 (60%), Gaps = 10/397 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+ Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + T Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAKALGIGEKETTTVETEPVAM 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E + D+E I + AS+E +E Sbjct: 365 TAEEL----------DLEATTDEHIEDNASLEDESKE 391 >gi|229552419|ref|ZP_04441144.1| transcription termination factor NusA [Lactobacillus rhamnosus LMS2-1] gi|229314156|gb|EEN80129.1| transcription termination factor NusA [Lactobacillus rhamnosus LMS2-1] Length = 404 Score = 452 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 139/353 (39%), Positives = 215/353 (60%), Gaps = 2/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++Q DA+ EK + ++VV+ + ++ A + Y ++ V+ +P+ GDI ++ + Sbjct: 2 SKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVKFDPKQGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y Sbjct: 122 ERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ Sbjct: 182 VTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--E 303 ++D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V + + Sbjct: 242 DAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDED 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + + Sbjct: 302 NDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELS 354 >gi|39996686|ref|NP_952637.1| transcription elongation factor NusA [Geobacter sulfurreducens PCA] gi|39983567|gb|AAR34960.1| N utilization substance protein A [Geobacter sulfurreducens PCA] gi|298505697|gb|ADI84420.1| transcription elongation factor NusA [Geobacter sulfurreducens KN400] Length = 385 Score = 452 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 173/350 (49%), Positives = 244/350 (69%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L I D + EK IDR +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHIIDQIVKEKGIDRHIVVEALEQAVLTAANKKFRNTRDLEAHYNPEVGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ +I ++ AR+ DP +++G + L F R+A Q+AKQVIIQKVREAER+ Sbjct: 67 VDEVQDSYKEIDMEEAREIDPDVEVGDSLGMKLDASGFTRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EFKD++GE+++G V+R E G++++DLG ++ V+ E RE R GDRVK+ I D Sbjct: 127 TIFNEFKDRIGELVTGVVRRFEKGDLVIDLGRAEAVLSHKEQAPREVYRQGDRVKTLITD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++KAV R+PGSRAK+AV+S DS + Sbjct: 187 IRMTPKGPQIVLSRTHPGVLAKLFEAEVPEIAEGIVEIKAVVREPGSRAKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D+A F NAL+PA+V+KV +D++ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDAARFACNALQPAVVSKVYIDDENRSM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E + ++ Sbjct: 307 EIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSETTAAEAELLQYSSY 356 >gi|291519298|emb|CBK74519.1| transcription termination factor NusA [Butyrivibrio fibrisolvens 16/4] Length = 393 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 145/348 (41%), Positives = 218/348 (62%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++AN + + +A EK+I DV++ + +S+ A ++ YG + +VEI+ TG+ Sbjct: 1 MAANTNDFWEALTDLAKEKNISMDVLIETIENSLLIACKNNYGKADNAKVEIDKNTGEYH 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL A+D +G +V + DFGR+A +AK I QK Sbjct: 61 VYLSKTVVDEVMDPVEEISLSDAQDISGKHQVGDIVQIEVKSKDFGRIAATAAKNTITQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +RE ER Y E+ + ++++G V R N+ V+LG +G + E + E +P DR Sbjct: 121 IREEERKVLYEEYYELQHKVVTGVVTRFSGNNIHVNLGKLEGFLSETEQVKGEYYKPQDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GP++L+SRTHP+ + KLF EV E+ +GIV++K++SR+ GSR K+AV Sbjct: 181 IKVYIVEVKTSNKGPRILVSRTHPELVKKLFEEEVSEVRDGIVEIKSISREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DPVGACVG G+RV A+V ELR EKIDIV W + A + NAL PA V V+ Sbjct: 241 WSNDEDVDPVGACVGQNGARVNAIVNELRGEKIDIVEWDENPAYLIENALSPAKVVAVIA 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D D V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 301 DADEKTARVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 348 >gi|227513181|ref|ZP_03943230.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC 11577] gi|227083562|gb|EEI18874.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC 11577] Length = 440 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 236/421 (56%), Gaps = 17/421 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 2 SKELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KTVVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y Sbjct: 122 ERENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++ Sbjct: 182 VTRVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 S IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D++ Sbjct: 242 SDIDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + R Q Q Sbjct: 302 DRACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAE----RKQKAQQ 357 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A N DE EE + + S E D ++ E+Q + E +E Sbjct: 358 AENEDE-----------GTTEESETAEPDQETSGEAVDTDS-QEVQTESDEDVEADAQDD 405 Query: 425 Q 425 Q Sbjct: 406 Q 406 >gi|283850804|ref|ZP_06368090.1| NusA antitermination factor [Desulfovibrio sp. FW1012B] gi|283573727|gb|EFC21701.1| NusA antitermination factor [Desulfovibrio sp. FW1012B] Length = 496 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 172/411 (41%), Positives = 264/411 (64%), Gaps = 7/411 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++ Sbjct: 1 MTELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ + +I L AR DP++ + + L D GR+A QSAKQVIIQ++R Sbjct: 61 KVVVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+ Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S Sbjct: 181 AYIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVIS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL PA VT++ +DE Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE R ++ N +F Sbjct: 301 DDKALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTES-----RFREVNASKKFLE 355 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 Q +V EI +++ GF +E+LA I +I G +++ + Sbjct: 356 QLASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGMTPSKRNDLRAALK 406 >gi|319892283|ref|YP_004149158.1| Transcription termination protein NusA [Staphylococcus pseudintermedius HKU10-03] gi|317161979|gb|ADV05522.1| Transcription termination protein NusA [Staphylococcus pseudintermedius HKU10-03] Length = 392 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 158/397 (39%), Positives = 239/397 (60%), Gaps = 10/397 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+ Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + T Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAKALGIGEKEATTVETEPVAM 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E + D+E I + AS+E +E Sbjct: 365 TAEEL----------DLEATTDEHIEDNASLEDESKE 391 >gi|302670327|ref|YP_003830287.1| transcription termination factor NusA [Butyrivibrio proteoclasticus B316] gi|302394800|gb|ADL33705.1| transcription termination factor NusA [Butyrivibrio proteoclasticus B316] Length = 384 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 134/344 (38%), Positives = 215/344 (62%), Gaps = 3/344 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ D + EK+I +D + + +S+ A ++ +G +IRVE++ D + E Sbjct: 4 ELMDALDLLEKEKNISKDSLFDAIENSLITACKNNFGKADNIRVEVDRNNCDFKCYADKE 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE +V + +ISL A+ +G +V+ L +FGR+A Q+AK VI+QK+RE Sbjct: 64 VVETADDVMDPQIEISLDDAKKISKKAKVGDIVAVSLNSKEFGRIATQNAKNVILQKIRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER Y E+ +K +I++G V+R N+ ++LG +D ++ +E + E RP R++ Sbjct: 124 EERGAIYNEYFEKEHDIVTGVVQRFIGKNISINLGRADAILNENEQVKGEVYRPTQRLRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++L+SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S+ Sbjct: 184 YVLEVKNGSKGPRILVSRTHPDLVKRLFEQEVAEIQDGTVEIKSIAREAGSRTKIAVYST 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++D VGACVG+ G+RV +V EL EKID++ W + + NAL PA + V D D Sbjct: 244 NPNVDAVGACVGVNGARVNLIVDELGGEKIDVINWDENPGNLIQNALSPAKIVAVFADPD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 EKSAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAK 347 >gi|295110274|emb|CBL24227.1| transcription termination factor NusA [Ruminococcus obeum A2-162] Length = 389 Score = 451 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 147/344 (42%), Positives = 225/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++ Sbjct: 2 NKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV E VE+ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 REVKEFVEDPAMEISLVEAQKLNTNAELGDIIKVEIHSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ E+++G V+RV NV V+LG +DGV+ +E + E +P +R+K Y Sbjct: 122 ERKVLYDQYYGMEKEVVTGIVQRVMGKNVSVNLGKADGVLSENEQVKGEEFKPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++LLSRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDTPKGPRILLSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KTALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|15895075|ref|NP_348424.1| transcription elongation factor NusA [Clostridium acetobutylicum ATCC 824] gi|15024772|gb|AAK79764.1|AE007689_2 Transcription terminator NusA [Clostridium acetobutylicum ATCC 824] gi|325509213|gb|ADZ20849.1| transcription elongation factor NusA [Clostridium acetobutylicum EA 2018] Length = 353 Score = 451 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 149/352 (42%), Positives = 224/352 (63%), Gaps = 4/352 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E +Q + EK I +++ S + D++ A + Y + ++RV +N E G+I Sbjct: 2 NQEFIQALKEIVEEKGISEELLFSTIEDALVAAYKKNYAKLTENVHNVRVSMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+E+E+ C+ISL A+ DP + +V + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKKVVQEIEDSICEISLDDAKSIDPKYQLDDIVDIEITPKSFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF +K +II+GTV R + GN+++DLG + ++ E I E+ + Sbjct: 122 IKEAERSLLYDEFSEKEFDIITGTVLRKDKGNILIDLGRIEAILGPSEQIPGEDYIYNSK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K +SR+ GSR K+AV Sbjct: 182 IKLYIVEVKNTTKGAQVVISRTHPGLVKRLFELEVPEIYNGIVEIKGISREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S D ++D +GACVG +G RVQ +V EL++EKIDI+ WS F+ N+L PA V V + Sbjct: 242 YSHDENVDAMGACVGPKGMRVQNIVNELKNEKIDIIKWSKLPEEFISNSLSPAKVLDVYI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 DED IV QLSLAIG+ GQNVRLA++LT W IDI ++ + + Sbjct: 302 DEDTKSARAIVEDNQLSLAIGKEGQNVRLAAKLTEWKIDIKSKSQYDSEVHE 353 >gi|227892601|ref|ZP_04010406.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM 16047] gi|227865586|gb|EEJ73007.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM 16047] Length = 413 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 137/357 (38%), Positives = 216/357 (60%), Gaps = 2/357 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 17 SKEMLEAFATLEKTKGIKQDVIIDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 76 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 77 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 136 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + +S E P D+++ Sbjct: 137 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMSNEVYNPQDQIRVL 196 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 197 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 256 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 257 PNIDPVGTCVGQKGTRVQNVVNELGGENIDIVKYEDDPSDFIANALNPAEVIAVQFGEDE 316 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + T+ Sbjct: 317 DEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDNTTE 373 >gi|291546819|emb|CBL19927.1| transcription termination factor NusA [Ruminococcus sp. SR1/5] Length = 397 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 145/342 (42%), Positives = 220/342 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L D + EK+I +D +L + S+ +A ++ +G ++ V I+PET D S++ Sbjct: 4 DLRDALDVLEKEKNISKDTLLEAIEQSLIQACKNHFGKADNVHVMIDPETCDFSVYADRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ +ISL A+ + + +IG V+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVEHVEDPALEISLVDAQKTNTNAEIGDVMKVEIQSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ E+++G V+RV NV ++LG +D V+ +E + E +P +RVK YI Sbjct: 124 KVLYDQYYGIEKEVVTGIVQRVMGKNVSINLGKADAVLTENEQVKGETFQPTERVKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVRDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVGM G+RV AVV EL EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDAVGACVGMNGARVGAVVNELHGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|221632782|ref|YP_002522004.1| transcription termination factor NusA [Thermomicrobium roseum DSM 5159] gi|221155810|gb|ACM04937.1| transcription termination factor NusA [Thermomicrobium roseum DSM 5159] Length = 439 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 150/340 (44%), Positives = 224/340 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + +L VA E+ I R+ V+ + +++ + G+ ++ +EI+ TG I +F Sbjct: 2 KSDLYTAIAQVAAERGIPREAVMESVQQALRTVYKKATGSDEEVEIEIDVNTGKIRIFAP 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V + +IS++ AR DP +G +V P +FGR+A Q+AKQVI+Q++R+ Sbjct: 62 KRVVEKVNDPLSEISIEEARKIDPRAIVGDIVRIERQPSNFGRIAAQTAKQVILQRIRDF 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF D+VGE+++GTV+RV+ VI+ G ++ ++ E I E RPG R+K Y Sbjct: 122 ERDTIYNEFIDRVGEVLTGTVQRVDARAVILSFGKAEAILPAREQIPGERYRPGQRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV ++ +GPQ+L+SRTHP + +L +EVPE+ +G V+V A++R+PG R+K+AV + Sbjct: 182 LVDVTKDAKGPQLLVSRTHPNLIKRLLELEVPEVASGAVEVMAIAREPGQRSKVAVAARQ 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RG R+Q++VTEL EKID++ WS D TF+ NAL PA V+L+ED Sbjct: 242 DKVDPVGACVGVRGVRIQSIVTELSGEKIDVIEWSSDIRTFIANALSPAKPITVILNEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP EQ+S AIG+ GQN RLA +LTGW IDI E Sbjct: 302 KVARVVVPPEQMSQAIGKDGQNARLAYKLTGWRIDIKDPE 341 >gi|227524396|ref|ZP_03954445.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC 8290] gi|227088627|gb|EEI23939.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC 8290] Length = 440 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 236/421 (56%), Gaps = 17/421 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 2 SKELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KTVVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y Sbjct: 122 ERENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++ Sbjct: 182 VTRVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 S IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D++ Sbjct: 242 SDIDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDN 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + R Q Q Sbjct: 302 DRACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAE----RKQKAQQ 357 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A N DE EE + + S E D ++ E+Q + E +E Sbjct: 358 AENEDE-----------GTTEESETAEPDQETSGEVVDTDS-QEVQTESDEDVEADAQDD 405 Query: 425 Q 425 Q Sbjct: 406 Q 406 >gi|227510252|ref|ZP_03940301.1| transcription elongation factor NusA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189904|gb|EEI69971.1| transcription elongation factor NusA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 444 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 143/367 (38%), Positives = 217/367 (59%), Gaps = 1/367 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 2 SKELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KTVVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y Sbjct: 122 ERENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++ Sbjct: 182 VTRVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D+D Sbjct: 242 SDIDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFDDDN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q + Sbjct: 302 DRACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQVENE 361 Query: 365 AINVDEI 371 + Sbjct: 362 DEGTTDE 368 >gi|227904178|ref|ZP_04021983.1| transcription elongation factor NusA [Lactobacillus acidophilus ATCC 4796] gi|227868197|gb|EEJ75618.1| transcription elongation factor NusA [Lactobacillus acidophilus ATCC 4796] Length = 400 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 140/395 (35%), Positives = 227/395 (57%), Gaps = 13/395 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 12 SKEMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 71 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 72 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 131 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 132 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVL 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 192 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V V DE Sbjct: 252 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDE 311 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ Sbjct: 312 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDSVSK--- 368 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 + + E + + E A V E A I Sbjct: 369 EDTDSSEDVV--------STEESTADVTTEEKAKI 395 >gi|154506276|ref|ZP_02043014.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149] gi|153793415|gb|EDN75835.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149] Length = 397 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 150/358 (41%), Positives = 234/358 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + EK+I RD ++ + +S+ A ++ +GT +I+V +N ET D +++ Sbjct: 2 NTELMEALTILEKEKNISRDTMMDAIENSLISACKNHFGTSDNIKVIMNRETCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +I+L+ A + D ++ IG V P+ +FGR+A +AK +I+QK+RE Sbjct: 62 KEVVEEVFDPAIEITLEDAEEIDSALQIGDVCQVPVQSKEFGRIATMNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ V+LG +D ++ +E + E +P DR+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISVNLGKADAMLTENEQVKGEVFKPTDRIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 ENVDPVGACVGMNGARVNAVVEELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Q M Sbjct: 302 KVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMDQMNM 359 >gi|295693137|ref|YP_003601747.1| transcription termination-antitermination factor nusa [Lactobacillus crispatus ST1] gi|295031243|emb|CBL50722.1| Transcription termination-antitermination factor NusA [Lactobacillus crispatus ST1] Length = 397 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 146/401 (36%), Positives = 231/401 (57%), Gaps = 7/401 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 2 SKEMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + +E+T Sbjct: 302 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESE-----VEFVDEKTNDTA 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 A + E ++ + ADVE E +S E EE Sbjct: 357 DAADSSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE 397 >gi|164688521|ref|ZP_02212549.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM 16795] gi|164602934|gb|EDQ96399.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM 16795] Length = 384 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 142/361 (39%), Positives = 231/361 (63%), Gaps = 2/361 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RV ++ E G++ ++ Sbjct: 2 NHEFMEALDELEKDRGIDKEIIIDTIEQALLTAYKKNFGSAQNVRVSVDREGGEVRVYSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L A DPS ++G ++ + + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RRVVDESDLYDTFLEIELADAIKIDPSYELGDIIENEVTPKEFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G + R V V++G + + +E I E + G ++K Sbjct: 122 EAEREIVYNEFIEKESEIVTGEIARATSKTVYVNVGKIEASMPENEQIPGEVYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF M+V EI+ GIVQ+K+VSR+ GSR K+AV S Sbjct: 182 VYILEVKKTNKGPQIVVSRSHPGLVKRLFEMQVVEIFEGIVQIKSVSREAGSRTKIAVQS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +GSRV+AVV EL EKIDI+ +S D A F+ AL P+ V KV ++E Sbjct: 242 IDEKIDPIGACVGPKGSRVKAVVDELGGEKIDIINYSEDPAEFISAALSPSKVEKVEINE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V+VP QLSLAIG+ GQN RLA++LT W IDI + + + N + F+ Sbjct: 302 EEKTALVVVPDYQLSLAIGKSGQNARLAAKLTNWKIDIKSVSQMQAEMEAIKNVQDVDFV 361 Query: 364 Q 364 + Sbjct: 362 E 362 >gi|295396943|ref|ZP_06807065.1| transcription termination factor NusA [Aerococcus viridans ATCC 11563] gi|294974796|gb|EFG50501.1| transcription termination factor NusA [Aerococcus viridans ATCC 11563] Length = 447 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 159/442 (35%), Positives = 252/442 (57%), Gaps = 17/442 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ +A+ EK I ++V+L + ++ A + Y ++ V + + G I ++ + Sbjct: 2 SKEMLRAFEALEDEKGISKEVILEALEAALVSAYKRNYQQAQNVEVNFDVKKGSIEVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+ V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVVDLVMDSQLEVSLEDAHHLNSAYEIGDKIKFEVTPKDFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ D +I++G V+R + V V LG + VI + I E +P +RV+ Y Sbjct: 122 ERSIIYNEYIDYEDDILTGIVERQDRRYVYVSLGKIEAVIPPEGQIPNETFQPHERVQVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SR+HP + +LF EVPEI++G V++KA++R+ G R+K+AV S+D Sbjct: 182 VERVENTTKGPQVYVSRSHPSLLKRLFEQEVPEIFDGTVEIKAIAREAGDRSKVAVVSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++ID VG CVG RGSRVQ +V EL+ E +DIV WS D ATF+ NAL PA V V Sbjct: 242 ANIDAVGTCVGPRGSRVQRIVDELKGENMDIVQWSDDMATFISNALNPADVLSVHFVPGE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP+ LSLAIG+RGQN RLA++LT IDI +E + Q + E + F + Sbjct: 302 TSCVVVVPENHLSLAIGKRGQNARLAAKLTNHKIDIKSEADFEAYIQTE--EYAERFAEK 359 Query: 366 INVDEIIAHLL------------VAEGFADVEE---LACVKISEIASIEGFDEETAVEIQ 410 + VDE + +L V EG ++E LA + E E+ +++ Sbjct: 360 VLVDEDVDPILAGDIESAEEYEVVTEGSTSIDEEDLLAMDDLEEGNVGPEAIEDQIDDVE 419 Query: 411 GRAREYLEGIDITLQKKIRELG 432 G + ++ + ++ + + Sbjct: 420 GEDNDIIDDEALIGEEDLDQQE 441 >gi|223936317|ref|ZP_03628229.1| NusA antitermination factor [bacterium Ellin514] gi|223894835|gb|EEF61284.1| NusA antitermination factor [bacterium Ellin514] Length = 425 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 152/398 (38%), Positives = 241/398 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L + + EK I R V++S + +S+ AA+ G ++R I+P++GDI F Sbjct: 2 NADFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFAK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L V E+V + ISL A+ P +G V + P FGR+A Q AKQ ++Q +R A Sbjct: 62 LIVSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRRA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ + EFKD+VG+IISG V+R + +V VDLG + ++ E + E + G+R++ Y Sbjct: 122 EKQLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKYEALLPNRERVPTEEYQIGERIRCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V GP+++LSR P+F++KLF +EV EI +G +++K ++R+PG R KLAV++ D Sbjct: 182 VKAVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYTRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RG RV+ +V EL +EK+DI+ W P+ F+ NAL PA + +DE Sbjct: 242 EKVDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDEAN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R++++V ++QLSLAIG+RGQN RL+S+LTGW +DI E + ++ E + Sbjct: 302 KRVKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLAAI 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + + A LV +G +E+L IS+++ I + Sbjct: 362 PGITQEQADTLVHQGLTRLEDLLQADISDLSGIPQIGD 399 >gi|331090930|ref|ZP_08339772.1| transcription termination factor NusA [Lachnospiraceae bacterium 2_1_46FAA] gi|330405152|gb|EGG84688.1| transcription termination factor NusA [Lachnospiraceae bacterium 2_1_46FAA] Length = 368 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 146/344 (42%), Positives = 225/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F Sbjct: 2 NTELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVIMNRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVENVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR+K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRSKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQAIE 345 >gi|260589530|ref|ZP_05855443.1| transcription termination factor NusA [Blautia hansenii DSM 20583] gi|260540098|gb|EEX20667.1| transcription termination factor NusA [Blautia hansenii DSM 20583] Length = 384 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 222/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D + Sbjct: 2 NTELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D + Sbjct: 242 PDVDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KSATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|225572728|ref|ZP_03781483.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM 10507] gi|225039901|gb|EEG50147.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM 10507] Length = 405 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 146/344 (42%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + EK+I +D +L + S+ +A ++ YG +++V I+P+T D S++ Sbjct: 2 NTELLGALEILEKEKNISKDTLLDAIEQSLIQACKNHYGKADNVKVSIDPQTCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ +ISL+ A ++G V+ P+ +FGR+A Q+AK VI+QK+RE Sbjct: 62 RTVVEQVEDPVMEISLENALKISARAEVGDVIKVPINSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ K ++++G V+R NV ++LG +D ++ +E + E P +R+K Y Sbjct: 122 ERKVLYNQYYGKEKDVVTGIVQRNLGKNVSINLGKADALLNENEQVKTEVFHPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDTPKGPRILVSRTHPELVKRLFESEVAEVREGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVSELRGEKIDIINWSENPAILIENALSPAKVIAVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KTALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 345 >gi|257413921|ref|ZP_04744677.2| transcription termination factor NusA [Roseburia intestinalis L1-82] gi|257201821|gb|EEV00106.1| transcription termination factor NusA [Roseburia intestinalis L1-82] Length = 425 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 231/349 (66%), Gaps = 2/349 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 ++S N ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + Sbjct: 18 IMSNN--ELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEF 75 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F+ VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+Q Sbjct: 76 HVFQEKTVVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQ 135 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+RE ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P + Sbjct: 136 KIREEERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTE 195 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K YI +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+A Sbjct: 196 RIKVYILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIA 255 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ Sbjct: 256 VWSNDPDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVI 315 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 316 ADAEEKSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 364 >gi|300854498|ref|YP_003779482.1| transcription elongation protein [Clostridium ljungdahlii DSM 13528] gi|300434613|gb|ADK14380.1| transcription elongation protein [Clostridium ljungdahlii DSM 13528] Length = 354 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 141/352 (40%), Positives = 228/352 (64%), Gaps = 4/352 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y +++V +N E G+I Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYMGHGAGSQNVKVTMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +IS++ A+ D S ++G + + + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKNVVEEVCDKFGEISVEDAKSMDSSYEVGDIANIEVTPRKFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y +F +K +II+GTV R + NV++DLG ++ V+ +E I E D+ Sbjct: 122 IKEEERRIIYSDFAEKEDDIITGTVIRKDKNNVLIDLGKTEAVLGPNEQIPGEKYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V +K+++R+ GSR K+AV Sbjct: 182 LKLYIIEVKNTTKGAQIVISRTHPGLIKRLFELEVPEIFDGTVDIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ N+L PA V V L Sbjct: 242 HSNDENVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKLPEEYIANSLSPAKVLDVDL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +ED+ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + ++ Sbjct: 302 NEDIKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQVETQNEE 353 >gi|229918666|ref|YP_002887312.1| NusA antitermination factor [Exiguobacterium sp. AT1b] gi|229470095|gb|ACQ71867.1| NusA antitermination factor [Exiguobacterium sp. AT1b] Length = 387 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 159/391 (40%), Positives = 229/391 (58%), Gaps = 14/391 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67 LL D +A EK ID+++++ + ++ A R ++VE + TGDI ++ LLE Sbjct: 5 LLTTIDQIAKEKGIDKNIIIDALEQALISAYRRNVANPNEHVKVEFDQVTGDIRVYALLE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE + Q+SL+ A + DP+ ++G + + P DFGRVA +AKQV+ QK+REAER Sbjct: 65 VVERLTQPDQQLSLEEAHEIDPNYELGDFHKEEVTPSDFGRVAAMTAKQVVTQKMREAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 +R Y F DK EI++G V+R + N+ + L N + V+ +E + E+ + DR+K Y+ Sbjct: 125 ERIYNHFADKEDEIMTGIVERFDPRNLYIGLENNIEAVLTPNEQMPNESYQIHDRIKVYV 184 Query: 187 YDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 V +G + +SRTHP + +LF +EVPEI NG V V +VSR+ G R+K+AV S Sbjct: 185 TKVDSTTKGSGAAIQVSRTHPGLLRRLFELEVPEISNGTVDVMSVSREAGDRSKIAVHS- 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +DPVGACVG +G RVQ +V EL EKIDIV WS D FV NAL PA V V ++E Sbjct: 244 -DIVDPVGACVGPKGQRVQTIVDELNGEKIDIVRWSEDPKEFVRNALSPAQVVAVYVNEP 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + + F + Sbjct: 303 AKSTTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDA------EALDLFDTFAE 356 Query: 365 AINVDEIIAHLLVAEGFA--DVEELACVKIS 393 + + I V + + VE A + Sbjct: 357 KVESEPKIVQNEVEQDLSDATVETTAVKEEE 387 >gi|325265380|ref|ZP_08132104.1| transcription termination factor NusA [Clostridium sp. D5] gi|324029381|gb|EGB90672.1| transcription termination factor NusA [Clostridium sp. D5] Length = 407 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 147/358 (41%), Positives = 234/358 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D ++ + +S+ A ++ +GT +I+V ++ ET D +++ Sbjct: 2 NTELLEALNILEQEKNISKDTMMDAIENSLISACKNHFGTAENIKVIMDRETCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A D ++ IG + P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KEVVEEVFDPALEISLEDAEQIDSALQIGDIAQIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGRNISINLGRADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 ENVDPVGACVGMNGARVNAVVNELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Q M Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMEQMAM 359 >gi|291550231|emb|CBL26493.1| transcription termination factor NusA [Ruminococcus torques L2-14] Length = 395 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 153/386 (39%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ D + EK+I +DV+L + +S+ A ++ +GT +I++ ++ T D S++ Sbjct: 2 NTELLEALDILEKEKNISKDVMLEAIENSLLSACKNHFGTSDNIKIVMDRNTCDYSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A +P++ IG + L +FGR+A Q+AK +I+QK+RE Sbjct: 62 REVVEEVFDPAIEISLEDAEKINPALHIGDIAQVELHSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ V+LG +D ++ +E + E+ P +R+K Y Sbjct: 122 ERKAVFDQYFEKEKDIVTGIVQRYIGKNISVNLGKADAILTENEQVKGEHFEPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTPKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 242 PNVDPVGACVGMNGARVNAVVKELRGEKIDIINWDENPALLIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + +M+ Sbjct: 302 KIAGVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAI-----ECGDLPENYMEQ 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVK 391 + + + EG+ EE V Sbjct: 357 MGM-------VGEEGYTVGEEYDDVP 375 >gi|238924307|ref|YP_002937823.1| transcription elongation factor NusA [Eubacterium rectale ATCC 33656] gi|238875982|gb|ACR75689.1| transcription elongation factor NusA [Eubacterium rectale ATCC 33656] gi|291525077|emb|CBK90664.1| transcription termination factor NusA [Eubacterium rectale DSM 17629] gi|291529172|emb|CBK94758.1| transcription termination factor NusA [Eubacterium rectale M104/1] Length = 414 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 154/397 (38%), Positives = 242/397 (60%), Gaps = 6/397 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I ++ +L + +S+ A ++ +G +++VEI+PET S ++ Sbjct: 4 ELLEALNILEQEKNISKETLLEAIENSLVTACKNHFGKSDNVKVEIDPETCAFSCYQEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ VE+ +ISL A + + +G +V + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVDTVEDPVEEISLADAHKVNGNYQLGDIVRVEVKSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ K ++++G V+R NV ++LG +D ++ E I E +P +R+K YI Sbjct: 124 KVIFDEYNSKEKDVVTGVVQRYIGKNVSINLGKADALLTESEQIKGEVFKPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++KA+SR+ GSR K+AV+S+D + Sbjct: 184 EVKSTSKGPKILVSRTHPELVKRLFESEVTEVKEGIVEIKAISREAGSRTKIAVWSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIITWDENPAILIQNALSPAKVISVIADADEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + Sbjct: 304 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFMDYENDYEEDDYDD 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + L E LA + +++ + E FD E Sbjct: 364 DYDYSDDELAEN-----ERLADTEQADVQA-EAFDTE 394 >gi|315038575|ref|YP_004032143.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1112] gi|312276708|gb|ADQ59348.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1112] Length = 395 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 136/357 (38%), Positives = 215/357 (60%), Gaps = 2/357 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 2 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ Sbjct: 302 DEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSSDSDSE 358 >gi|302874660|ref|YP_003843293.1| NusA antitermination factor [Clostridium cellulovorans 743B] gi|307690726|ref|ZP_07633172.1| transcription elongation factor NusA [Clostridium cellulovorans 743B] gi|302577517|gb|ADL51529.1| NusA antitermination factor [Clostridium cellulovorans 743B] Length = 356 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 146/355 (41%), Positives = 226/355 (63%), Gaps = 4/355 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 + L + EK I D + + D++ A + Y T + +V +N ETGDI Sbjct: 2 NADFLLALKEIVKEKGISEDQLFETIEDAMVAAYKKNYSKGSETNQNFKVTMNRETGDIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +F ++VE V N +I+L+ A++ DP +IG +V + P DFGRVA Q+AKQ++IQ+ Sbjct: 62 VFSRKDIVENVLNPVNEITLEEAKNYDPRYEIGEIVDIEVTPKDFGRVAAQAAKQLVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y EF +K +II+GTV R + NV+V++G + V+ E I E ++ Sbjct: 122 IKEAERNLIYEEFAEKEFDIINGTVIRKDKKNVLVNIGRIETVLNESEQIPGEQYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V++ +GP +++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LKLYVVEVKKTSKGPSIVVSRTHPNLVKRLFEIEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL +EKIDI+ W+ ++ N+L PA V + Sbjct: 242 YSNDEDVDAMGACVGSKGLRVQNIVNELGNEKIDIIKWNKLPEEYIANSLSPAKTLDVSI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 DE +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + S+ + Sbjct: 302 DEQNKCAKVIVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQHSVEATTEEE 356 >gi|227878819|ref|ZP_03996726.1| transcription elongation factor NusA [Lactobacillus crispatus JV-V01] gi|227861567|gb|EEJ69179.1| transcription elongation factor NusA [Lactobacillus crispatus JV-V01] Length = 407 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 145/401 (36%), Positives = 229/401 (57%), Gaps = 7/401 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 12 SKEMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 71 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 72 KTVVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 131 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 132 ERKHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVL 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 192 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 252 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 311 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LT + IDI E E + +E+T Sbjct: 312 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESE-----VEFVDEKTNDTA 366 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 A + E ++ + ADVE E +S E EE Sbjct: 367 DAADSSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE 407 >gi|241667733|ref|ZP_04755311.1| transcription elongation factor NusA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876277|ref|ZP_05248987.1| transcription elongation factor nusA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842298|gb|EET20712.1| transcription elongation factor nusA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 489 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 165/517 (31%), Positives = 293/517 (56%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ ++ K+G+I+ G VKR Y +++DLGN ++G++ + + ISRE R GD+ Sbjct: 122 KNFEREKTARFYQGKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++S + V ++ G V+LSR + LF +EVPE+ ++ V V R+PG R+K+ Sbjct: 182 IRSCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +E+L ++ G++ ++ L +N I TME+LA SVD+L Sbjct: 418 ILSQA------LGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + + Q +I+ AR W E Sbjct: 466 -----------LDIVAIDEKQATDLIMQARAP--WFE 489 >gi|210612465|ref|ZP_03289323.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787] gi|210151573|gb|EEA82580.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787] Length = 373 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 156/372 (41%), Positives = 235/372 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F Sbjct: 2 NTELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVVMNRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEEVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K++SR+ GSR K+AV+S+D Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKEGIVEIKSISREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVSELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMNLSTEVS 361 Query: 366 INVDEIIAHLLV 377 DE I LV Sbjct: 362 EEADEEIPDELV 373 >gi|168187910|ref|ZP_02622545.1| transcription termination factor NusA [Clostridium botulinum C str. Eklund] gi|169294236|gb|EDS76369.1| transcription termination factor NusA [Clostridium botulinum C str. Eklund] Length = 348 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 223/348 (64%), Gaps = 5/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I +++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIGEELLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ ++ EE + +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKI-EEEPSGVNEISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E + Sbjct: 121 IKEAERKVIYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGIVEIKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D++ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DDENKSAKIVVEDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEE 348 >gi|310658997|ref|YP_003936718.1| transcription translation coupling factor [Clostridium sticklandii DSM 519] gi|308825775|emb|CBH21813.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Clostridium sticklandii] Length = 357 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 142/355 (40%), Positives = 229/355 (64%), Gaps = 12/355 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + EK I ++++ + ++ A + +GT S++RVE++ + G++ +F Sbjct: 2 NAEFIAALEQIETEKGISKEILFEALESALLNAYKKNFGTSSNVRVEMDKDKGEVKVFSR 61 Query: 66 LEVVE--EVENYTCQISLKVARD-RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E + +IS++ A++ P+ G V+ + + P +FGR+A Q+A+Q++IQK+ Sbjct: 62 KSVVNKYEYDLGEGEISVEEAQERYGPNYGDGDVIEEEVTPKNFGRIAAQAARQMVIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISR 173 +EAERD Y EF ++ EII+G V R GNV V+L +++ V+ E I Sbjct: 122 KEAERDIVYEEFLNRESEIITGEVSRQGKGNVYVNLSIIGSKDITISAEAVLPPSEQIPF 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 EN PG RVK Y+ +V++ PQ+L+SR+HP + +LF EVPEI++G+VQ+K++SR+ Sbjct: 182 ENYMPGARVKVYVLEVKKNNNVPQILVSRSHPGLVKRLFESEVPEIFDGVVQIKSISREA 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSR K+AV S D ++DP+GACVG +G RV+ +V EL+ EKIDI+++S D F+ +L P Sbjct: 242 GSRTKMAVHSVDENVDPIGACVGPKGQRVKNIVDELKGEKIDIIIYSEDPKEFISASLSP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + V V ++ED +V+VP ++LSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 SKVISVDVNEDDKSAKVVVPDDKLSLAIGKEGQNARLAAKLTGWKIDIKSESQAE 356 >gi|167627171|ref|YP_001677671.1| transcription elongation factor NusA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597172|gb|ABZ87170.1| transcription elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 489 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 165/517 (31%), Positives = 293/517 (56%), Gaps = 38/517 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 2 SKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRV 61 Query: 66 LEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E++ +Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K+ Sbjct: 62 WHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + ER++ ++ K+G+I+ G VKR Y +++DLGN ++G++ + + ISRE R GD+ Sbjct: 122 KNFEREKTARFYQSKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDK 181 Query: 182 VKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++S + V ++ G V+LSR + LF +EVPE+ ++ V V R+PG R+K+ Sbjct: 182 IRSCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA---IV 296 V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + Sbjct: 242 TVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDI 301 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 302 LEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQEEKQM---- 357 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ Sbjct: 358 SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKAV 417 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + +E+L ++ G++ ++ L +N I TME+LA SVD+L Sbjct: 418 ILSQA------LGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDEL------ 465 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + + Q +I+ AR W E Sbjct: 466 -----------LDIVAIDEKQATDLIMQARAP--WFE 489 >gi|327183772|gb|AEA32219.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1118] Length = 395 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 135/357 (37%), Positives = 214/357 (59%), Gaps = 2/357 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 2 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + ++ Sbjct: 302 DEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDENSSDSDSE 358 >gi|317500433|ref|ZP_07958657.1| transcription termination factor NusA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089560|ref|ZP_08338459.1| transcription termination factor NusA [Lachnospiraceae bacterium 3_1_46FAA] gi|316898188|gb|EFV20235.1| transcription termination factor NusA [Lachnospiraceae bacterium 8_1_57FAA] gi|330404928|gb|EGG84466.1| transcription termination factor NusA [Lachnospiraceae bacterium 3_1_46FAA] Length = 404 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 233/356 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++ Sbjct: 2 NTELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KNVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y Sbjct: 122 ERKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D + Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N + Sbjct: 302 KIASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMEEM 357 >gi|153954053|ref|YP_001394818.1| transcription elongation factor NusA [Clostridium kluyveri DSM 555] gi|219854666|ref|YP_002471788.1| hypothetical protein CKR_1323 [Clostridium kluyveri NBRC 12016] gi|146346934|gb|EDK33470.1| NusA [Clostridium kluyveri DSM 555] gi|219568390|dbj|BAH06374.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 139/352 (39%), Positives = 230/352 (65%), Gaps = 4/352 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y + +++V +N E G+I Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYIGHGISNQNVKVTMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +V+ V + +ISL+ A++ D + D+G +V+ + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKSIVDNVVDDVSEISLEDAKEIDSNYDMGDIVNIEVTPRKFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y +F +K +II+GTV R + N++V+LG ++ ++ +E I E D+ Sbjct: 122 IKEEERRIIYNDFVEKEDDIITGTVIRKDKNNILVNLGKTEAILGPNEQIPGEKYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G Q+++SRTHP + +LF +EVPE+++G V +K+++R+ GSR K+AV Sbjct: 182 LKLYIVEVKNTTKGAQIVISRTHPGLIKRLFELEVPEVFDGTVDIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++DP+GACVG +G RVQ +V EL+ EKIDI+ WS ++ NAL PA V V L Sbjct: 242 HSNDENVDPMGACVGPKGVRVQNIVNELKSEKIDIIKWSKLPEEYIANALSPAKVLDVTL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 DE++ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +K Sbjct: 302 DEEIKFAQIVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQSDVEDEK 353 >gi|153814921|ref|ZP_01967589.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756] gi|145847952|gb|EDK24870.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756] Length = 404 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 234/356 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++ Sbjct: 2 NIELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KNVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y Sbjct: 122 ERKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D + Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N + Sbjct: 302 KIASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMEEM 357 >gi|197303044|ref|ZP_03168092.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC 29176] gi|197297899|gb|EDY32451.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC 29176] Length = 397 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 149/356 (41%), Positives = 234/356 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK+I +DV++ + +S+ A ++ +GT +I++ ++ ET D S+F Sbjct: 2 NTELLEALTILEKEKNISKDVMMEAIENSLLSACKNHFGTSDNIKIVMDRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A +PS+ IG + P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KEVVEEVFDPAIEISLEDAEKINPSLHIGDIAQVPVYSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ P +R+K Y Sbjct: 122 ERKVVFDQYFEKEKDIVTGIVQRYVGKNISINLGRADAMLTENEQVKGEHFEPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENALSPAKVISVMADPDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + N Q Sbjct: 302 KVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPENYMEQM 357 >gi|256843341|ref|ZP_05548829.1| transcription termination factor NusA [Lactobacillus crispatus 125-2-CHN] gi|256849840|ref|ZP_05555271.1| transcription termination-antitermination factor [Lactobacillus crispatus MV-1A-US] gi|262046914|ref|ZP_06019874.1| transcription termination factor NusA [Lactobacillus crispatus MV-3A-US] gi|256614761|gb|EEU19962.1| transcription termination factor NusA [Lactobacillus crispatus 125-2-CHN] gi|256713329|gb|EEU28319.1| transcription termination-antitermination factor [Lactobacillus crispatus MV-1A-US] gi|260572896|gb|EEX29456.1| transcription termination factor NusA [Lactobacillus crispatus MV-3A-US] Length = 397 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 145/401 (36%), Positives = 229/401 (57%), Gaps = 7/401 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 2 SKEMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERKHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LT + IDI E E + +E+T Sbjct: 302 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESE-----VEFVDEKTNDTA 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 A + E ++ + ADVE E +S E EE Sbjct: 357 DAADSSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE 397 >gi|291536069|emb|CBL09181.1| transcription termination factor NusA [Roseburia intestinalis M50/1] Length = 402 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 146/344 (42%), Positives = 227/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 3 NNELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQE 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+QK+RE Sbjct: 63 KTVVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQKIREE 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K Y Sbjct: 123 ERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 183 ILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSND 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 243 PDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 303 KSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 346 >gi|118443498|ref|YP_878211.1| transcription elongation factor NusA [Clostridium novyi NT] gi|118133954|gb|ABK60998.1| transcription termination factor NusA [Clostridium novyi NT] Length = 348 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 5/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I ++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIGEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ ++ EE + +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKI-EEEPSGVNEISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E + Sbjct: 121 IKEAERKVVYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V+VK+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGVVEVKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D++ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DDENKSAKIVVEDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEE 348 >gi|325957049|ref|YP_004292461.1| transcription elongation factor NusA [Lactobacillus acidophilus 30SC] gi|325333614|gb|ADZ07522.1| transcription elongation factor NusA [Lactobacillus acidophilus 30SC] Length = 395 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 135/357 (37%), Positives = 214/357 (59%), Gaps = 2/357 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 2 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYKQAQNVEVDFDERKGDFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + ++ Sbjct: 302 DEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDENSSDSDSE 358 >gi|303248242|ref|ZP_07334505.1| transcription termination factor NusA [Desulfovibrio fructosovorans JJ] gi|302490380|gb|EFL50291.1| transcription termination factor NusA [Desulfovibrio fructosovorans JJ] Length = 478 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 174/432 (40%), Positives = 270/432 (62%), Gaps = 7/432 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++ Sbjct: 1 MTELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ + +I L AR DP++ + + L + GR+A QSAKQVIIQ++R Sbjct: 61 KVVVEDDDVADPAAEICLSDARAIDPNVALDDEMGFKLTVENLGRIAAQSAKQVIIQRMR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+ Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S Sbjct: 181 AYIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVVS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL P+ VT++ +DE Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPSRVTRISVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE R ++ N +F Sbjct: 301 DEKALEVVVSDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTES-----RFREVNASKKFLE 355 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V EI ++A GF +E+LA I +I G +++ + + Sbjct: 356 QLASVAEIPVDNILAAGFESMEQLAEAPDEAIDAISGMTPSKRDDLRAALKLMGAVAARS 415 Query: 424 LQKKIRELGVSE 435 + E V+E Sbjct: 416 EEADAEEDAVAE 427 >gi|225570594|ref|ZP_03779619.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM 15053] gi|225160607|gb|EEG73226.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM 15053] Length = 397 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ ET D +F Sbjct: 2 NTELLEALNILEKEKDISKETLLDAIENSLLNACKNHFGKADNIKVIMDRETCDYKVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEVE+ QISL+ AR+ D + ++G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTAVEEVEDDLEQISLEDAREIDSTFELGDIVQIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGTVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV +V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNTIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIE 345 >gi|293381214|ref|ZP_06627222.1| transcription termination factor NusA [Lactobacillus crispatus 214-1] gi|290922254|gb|EFD99248.1| transcription termination factor NusA [Lactobacillus crispatus 214-1] Length = 397 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 144/401 (35%), Positives = 229/401 (57%), Gaps = 7/401 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +D+++ + ++ A + Y ++ V+ + G+ + + Sbjct: 2 SKEMLEAFATLENTKGIKQDIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERKHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LT + IDI E E + +E+T Sbjct: 302 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESE-----VEFVDEKTNDTA 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 A + E ++ + ADVE E +S E EE Sbjct: 357 DAADSSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE 397 >gi|253580823|ref|ZP_04858086.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847893|gb|EES75860.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 406 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 149/342 (43%), Positives = 222/342 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D + EKSI +D +L + S+ +A ++ +G ++ V I+PET D S++ Sbjct: 4 ELREALDILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNVHVTIDPETCDFSVYADRS 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE VE+ +ISL A +IGG++ P+ +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 IVEYVEDPAMEISLADALKITSRAEIGGMIQVPIQSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K E+++G V+RV NV ++LG +D V+ +E + E +P +R+K YI Sbjct: 124 KVLYDEYYGKEKEVVTGIVQRVMGKNVSINLGKADAVLSENEQVKGETFQPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDAVGACVGMNGARVNAVVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 345 >gi|313888283|ref|ZP_07821954.1| transcription termination factor NusA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845686|gb|EFR33076.1| transcription termination factor NusA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 411 Score = 446 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 159/408 (38%), Positives = 252/408 (61%), Gaps = 7/408 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK I +++V + ++ + R YGT ++ V ++ ETG+I LF Sbjct: 2 NQEFIDALSEIEKEKGISKEIVFEALESALVSSYRKNYGTSENVIVNMDRETGEIKLFAS 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+VE+ +ISL A+ +P+ +IG V + + P +FGR+A Q+AKQV+IQ++++A Sbjct: 62 KDIVEKVEDPQLEISLDEAKKINPNYEIGDVYNQEIHPKNFGRIAAQTAKQVVIQRIKDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ ++ EII+G V+R Y NV VDLG+++ ++ E IS E+ GDR K Sbjct: 122 ERDIVFDEYVEREKEIITGLVQRKSYNNVYVDLGSTEAILPYSEQISGESYNHGDRYKML 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ++LSR+HP + +LF +E+PE+ GIV++ ++SR+ GSR K+AVFS D Sbjct: 182 ILSVEKSTKGPQIVLSRSHPDLIKRLFELEIPEVSEGIVEIYSISREAGSRTKIAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+GACVG +G RV A+V E+ +EKIDIV++ + F+ N+L P+ V KV ++E Sbjct: 242 PEVDPLGACVGYKGQRVNAIVDEIDNEKIDIVIYEKEIDKFIANSLSPSKVEKVFVNEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 IVP QLSLAIG+ GQNVRLA++LTGW IDI + + ++ + Sbjct: 302 KSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSNLQFEEYLEERNITEEDLIEEY 361 Query: 366 IN-VDEIIAHLLVAEGFADVEE----LACVKISEIASIEGFDEETAVE 408 N V E + V+E + EE + ++ ++E DEE++VE Sbjct: 362 ENAVKENVEE--VSEDLNNPEEQDIKIDDIEDEVCGNLENADEESSVE 407 >gi|238854742|ref|ZP_04645072.1| transcription termination factor NusA [Lactobacillus jensenii 269-3] gi|260663974|ref|ZP_05864827.1| transcription termination factor NusA [Lactobacillus jensenii SJ-7A-US] gi|282932867|ref|ZP_06338264.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|313472265|ref|ZP_07812757.1| transcription termination factor NusA [Lactobacillus jensenii 1153] gi|238832532|gb|EEQ24839.1| transcription termination factor NusA [Lactobacillus jensenii 269-3] gi|239529661|gb|EEQ68662.1| transcription termination factor NusA [Lactobacillus jensenii 1153] gi|260561860|gb|EEX27829.1| transcription termination factor NusA [Lactobacillus jensenii SJ-7A-US] gi|281302902|gb|EFA95107.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] Length = 368 Score = 446 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 131/342 (38%), Positives = 209/342 (61%), Gaps = 2/342 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L+ + EK I +++++ + ++ A + Y ++ V+ + G+ + + Sbjct: 3 KEMLEAFATLENEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAIK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAE Sbjct: 63 TVVDEVQDARLEVSLKEALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ E+ E+++G V+R + V V + + V+ R + + E P D+++ + Sbjct: 123 RNHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D Sbjct: 183 TKVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DED 304 +IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA V DED Sbjct: 243 NIDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDED 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + Sbjct: 303 EKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQ 344 >gi|291279908|ref|YP_003496743.1| N utilization substance protein A [Deferribacter desulfuricans SSM1] gi|290754610|dbj|BAI80987.1| N utilization substance protein A [Deferribacter desulfuricans SSM1] Length = 443 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 172/429 (40%), Positives = 269/429 (62%), Gaps = 9/429 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL ++AD + EK + ++++ + DSI+ A YG ++D V ++ E G I + Sbjct: 1 MKELAKVADEIGKEKGLSKELLKEALEDSIKAAVIRKYGRLTDPEVTVDIERGKIDIKVP 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VEN +I L+ A+ P ++G V+ P+ + GR A AKQ +++K+REA Sbjct: 61 KEVVESVENKKYEILLEDAKKIKPDAELGDVIMVPISFQELGRQAATVAKQRMVEKIREA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y EF++K+G+I++G V + + ++IV +G ++ + + E I + GD V++ Sbjct: 121 EKQVVYDEFQNKIGQIVTGVVLKSDKDSMIVSIGKTEAFMPKREIIPGDYYDRGDYVRAL 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + ++R + PQ++LSRTHP F+ KLF +E+PE++ GI++VKAV+R+PG RAK+AV+S + Sbjct: 181 LLEIRVIRGWPQLILSRTHPDFLKKLFEVEIPEVFEGIIEVKAVAREPGDRAKVAVYSKN 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+IDPVGAC+G++G+R+ A+ ELR EKID++ WSPD FV NAL PA V + ED Sbjct: 241 SNIDPVGACIGLKGTRINAISNELRGEKIDVIEWSPDPVKFVCNALSPADVILTNIFEDE 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ---KDFNERTQFF 362 IEV+VP +QLSLAIG+RGQNVRLA+ LTGW +D++ E E +I R+ ++ E + F Sbjct: 301 KTIEVVVPDDQLSLAIGKRGQNVRLAAMLTGWRLDVLKESEYNIIRKERLQEQEEELKEF 360 Query: 363 MQAIN------VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + N +DE + L+ G DVE+L+ + E+ G +E+ AV I A +Y Sbjct: 361 YEIYNLENIDVLDENMISKLIEHGIDDVEKLSTASVDEVVMALGVNEDQAVVIINSAIDY 420 Query: 417 LEGIDITLQ 425 L L Sbjct: 421 LTEKLEELD 429 >gi|258645576|ref|ZP_05733045.1| transcription termination factor NusA [Dialister invisus DSM 15470] gi|260402934|gb|EEW96481.1| transcription termination factor NusA [Dialister invisus DSM 15470] Length = 377 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 221/344 (64%), Gaps = 4/344 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LLQ + + +K ++ DVV + + A + G+ + + ++ TG+ ++ V Sbjct: 5 LLQAVNFLVDKKKVEADVVFDALEMVLLTAYKKEMGSNAKTSISLDRTTGEYKIYEEKTV 64 Query: 69 VE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VE E EN +I+++ A+ + G ++ + P DFGRVA Q+AKQV+IQK+RE Sbjct: 65 VEVIDPESENAINEITVENAKKISKDYEAGDMLRVDVTPKDFGRVAAQAAKQVLIQKLRE 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF + G+II+GTVK E V VDLG +G++ E I E +P D++K Sbjct: 125 AERGSIYEEFSGREGDIITGTVKWSESRTVFVDLGRVEGILPFAEQIEGETFQPNDKIKC 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +VR+ +GP+++LSRTHP + +LF MEVPEIY+G V++K+V R+ GSRAK+AV++ Sbjct: 185 YVQEVRKTTKGPEIILSRTHPGLLKRLFEMEVPEIYSGTVEIKSVVREAGSRAKIAVYAM 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ NAL PA V V + ++ Sbjct: 245 DPNVDPVGACVGPKGQRVQNIVNELHDEKIDIVRWDEDPAIYIANALSPAKVVSVSVWDE 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG+ GQN RLA++LT W IDI +E + + Sbjct: 305 ERSSYVIVPDYQLSLAIGKAGQNARLANKLTNWKIDIKSESQAA 348 >gi|73662811|ref|YP_301592.1| transcription elongation factor NusA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495326|dbj|BAE18647.1| transcription termination-antitermination factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 397 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 157/405 (38%), Positives = 245/405 (60%), Gaps = 11/405 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + +RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARTVRVELNMDQGSFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEE + +ISL A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEESMDDREEISLDTALVKNPAYEIGDIYEEDVTPSDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEDDIVTGLIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V Sbjct: 179 IRVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S + ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 HSDNPDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLQVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DEPNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARAAGVYPAE----- 353 Query: 362 FMQAINVDEIIA--HLLVAEGFADVEELACVKISEIASIEGFDEE 404 +A+N ++ + ++ +E E+ + +E IE D E Sbjct: 354 --EALNEEDEMQLDDVVSSENIEVEEDTTESQPTETVEIEDEDAE 396 >gi|150016083|ref|YP_001308337.1| transcription elongation factor NusA [Clostridium beijerinckii NCIMB 8052] gi|149902548|gb|ABR33381.1| NusA antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 155/402 (38%), Positives = 249/402 (61%), Gaps = 9/402 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y +++V I+ ETG+I Sbjct: 2 NEEFVGALKELVKEKGICEDLLFTTIQDAMVAAYKKNYANANTNAQNVKVNIDRETGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A++ +P ++ ++S + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKTVVDEVYDDVTEISLEEAKELNPKSEVDDIISLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y E+K+K +II+GT+ R + G V V+LG +G+I +E I E + ++ Sbjct: 122 IKEAERTIIYDEYKEKEFDIITGTILRKDKGIVFVNLGKLEGIIGPNEQIPNEEYKFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQ+ +SRTHP + +LF +EVPEI+ G+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNGNKGPQIHVSRTHPGLVKRLFELEVPEIFEGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DP+GACVG +G RVQ++V EL++EKIDI+ WS + F+ N+L PA V V + Sbjct: 242 YSNDEEVDPMGACVGPKGVRVQSIVNELKNEKIDIIKWSKNPEEFIANSLSPAKVLSVAV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + + ++ Sbjct: 302 DENNKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQ-KEAQDEEDERILNT 360 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 ++ N E L E F D+E I E S+E E Sbjct: 361 EVEIEN--EQTTDLNELEIFDDIE--VDDSIDEETSMEEIQE 398 >gi|309389230|gb|ADO77110.1| NusA antitermination factor [Halanaerobium praevalens DSM 2228] Length = 408 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 155/417 (37%), Positives = 255/417 (61%), Gaps = 14/417 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +Q D + +K I ++V+L + ++ A + +G+ ++R+EI+ E G++ +F Sbjct: 2 NIEFIQALDDIEKDKGISKEVLLDAIETALVSAYKKDFGSKDNVRIEISAEAGEVKVFSR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEVEN +ISL A + D IG +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KEVVEEVENKNSEISLIEAENIDSKYTIGDIVEIEVTPANFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + ++K+K E+I+GT++R N+++D+G ++ ++ E I+ E G+R+K Y Sbjct: 122 ERDVIFDQYKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGERYEIGERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V +GP++L+SRTHP + +LF +EVPEI+ G+V++K V+R+ G R+K+AV S++ Sbjct: 182 VVEVSTTNKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKEVAREAGQRSKMAVSSTE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQAVV +L +EKIDIV W D FV NAL PA V V +++ Sbjct: 242 KQVDPVGSCVGPKGMRVQAVVDQLNNEKIDIVKWDEDPEVFVANALNPAEVISVDINKSE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW +DI E E ++ +K + + Sbjct: 302 KIARVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESEIEAEIEKKKIEKNASELAK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +++ E A ++ + + E +E +++ E E ++ Sbjct: 362 SLDKFEENIE-------------AEMETDNLEAAEKVNENLIDKMENDLDEQTEDLE 405 >gi|225374838|ref|ZP_03752059.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM 16841] gi|225213299|gb|EEG95653.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM 16841] Length = 390 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 144/348 (41%), Positives = 230/348 (66%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + A ELL+ + + EK+I ++ +L + +S+ A ++ +G +++V I+PET + Sbjct: 5 IMAKNNELLEALNILEQEKNISKETLLEAIENSLITACKNHFGKSENVKVNIDPETCEYH 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +F+ +VVE+VE+ +ISL A+ D ++ +V+ + +FGR+A Q+AK VI+QK Sbjct: 65 VFQEKKVVEKVEDPVEEISLVNAKMIDSKYELDDIVNVEVKSKEFGRIATQNAKNVILQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +RE ER + E+ K +I++G V+R NV ++LG D ++ +E + E +P +R Sbjct: 125 IREEERKVLFDEYYSKEKDIVTGIVQRYVGKNVSINLGKVDAILTENEQVKGEVFQPTER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++KA++R+ GSR K+AV Sbjct: 185 IKVYILEVKSTSKGPRVLVSRTHPELVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ Sbjct: 245 WSNDPDVDPVGACVGMNGARVNAIVNELRGEKIDIITWNENPAMLIENALSPAKVISVIA 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 305 DAEEKAAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 352 >gi|116492653|ref|YP_804388.1| transcription elongation factor [Pediococcus pentosaceus ATCC 25745] gi|116102803|gb|ABJ67946.1| Transcription elongation factor [Pediococcus pentosaceus ATCC 25745] Length = 362 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 207/343 (60%), Gaps = 1/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I ++V++ + ++ A + YG ++ VE N GDI ++ + Sbjct: 2 SKEMITALDILEKEKGIKKEVIVEALEAALVSAFKRNYGQAQNVEVEFNDRKGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ ++SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KKVVEEVEDDQLEVSLADALMINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ EI++G V + V VDLG + V+ + + I E P D +K Y Sbjct: 122 ERGVIYEKYGQYEDEIVTGEVSHRDNRYVYVDLGGVEAVMAKSDQIPGEQYEPHDHIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ+ SRT + +LF EVPE+Y+G V++ +++R+ G RAK+AV S+D Sbjct: 182 ITKVENNGKGPQIFASRTDSGLLKRLFEQEVPEVYDGTVEIMSIAREAGDRAKIAVRSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 ID VG CVG +G RVQ +V EL E +DI+ W D A ++ NAL+P+ V V+ + ED Sbjct: 242 PDIDAVGTCVGAKGQRVQTIVNELHGENMDIIEWKEDPAEYIANALKPSEVIDVLFNEED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIGRRGQN RLA++L + IDI +E + Sbjct: 302 ENYCMVIVPDYQLSLAIGRRGQNARLAAKLVNFKIDIKSETDA 344 >gi|255284074|ref|ZP_05348629.1| transcription termination factor NusA [Bryantella formatexigens DSM 14469] gi|255265419|gb|EET58624.1| transcription termination factor NusA [Bryantella formatexigens DSM 14469] Length = 427 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 145/344 (42%), Positives = 225/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ D + EK+I ++V+L + S+ +A ++ +G +++V+INP+T + S+ Sbjct: 2 NNELMEALDVLEKEKNISKEVLLEAIEQSLLQACKNHFGKADNVKVDINPDTCEFSVHAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL A+ +D ++G VV+ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVEEVEDPVTEISLVDAKMKDSRYEVGDVVNVEIKSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K E+++G V+R NV ++LG D ++ +E + E RP +R+K Y Sbjct: 122 ERKVLYNEYYSKEREVVTGIVQRYLGRNVSINLGKVDAILNENEMVKGETFRPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++K ++R+ G+R K+AV+S+D Sbjct: 182 VLEVKDTPKGPKVLVSRTHPELVKRLFESEVTEVRDGTVEIKCIAREAGNRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ GSRV +V ELR EKIDI+ W + A + NAL PA V V D D Sbjct: 242 PDVDAVGACVGINGSRVNTIVEELRGEKIDIINWDENPALLIENALSPAKVIYVAADNDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KTAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAIE 345 >gi|28210959|ref|NP_781903.1| transcription elongation factor NusA [Clostridium tetani E88] gi|28203398|gb|AAO35840.1| N utilization substance protein A [Clostridium tetani E88] Length = 361 Score = 444 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 222/345 (64%), Gaps = 4/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I +++ + + D++ A + Y T + V +N ETG+I Sbjct: 2 NEEFIVALKEIVKEKGISAELLFNTIEDALVAAYKKNYSKQGATSQHVNVSMNRETGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEVE+ +I ++ A+ DP ++ +V + P FGRVA Q+AKQV++Q+ Sbjct: 62 VYSRKNVVEEVEDEFNEIFVEDAKTIDPRYELEDIVDIEVTPEKFGRVAAQAAKQVVVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y EF +K +II+G V R + NV ++LG + V+ +E + E D+ Sbjct: 122 IKEEERRIVYNEFIEKECDIITGNVIRKDKTNVFINLGKIEAVLGPNEQMPGEEYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K++SR+ GSR K+AV Sbjct: 182 LKLYIVEVKNTTKGAQVVVSRTHPGLVKRLFELEVPEIYNGIVEIKSISREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++D +GACVG +G+RVQ +V EL++EKIDI+ WS F+ NAL PA V KV + Sbjct: 242 HSNDENVDSMGACVGPKGTRVQNIVNELKNEKIDIIKWSKLPDEFISNALSPARVLKVDV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI + + Sbjct: 302 DEESKSAKVLVEDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSLSQ 346 >gi|58337537|ref|YP_194122.1| transcription elongation factor NusA [Lactobacillus acidophilus NCFM] gi|58254854|gb|AAV43091.1| transcription termination-antitermination factor [Lactobacillus acidophilus NCFM] Length = 389 Score = 444 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 137/391 (35%), Positives = 225/391 (57%), Gaps = 5/391 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 2 SKEMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ Sbjct: 122 ERNHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ Sbjct: 302 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDSVSK--- 358 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISE 394 + + E + + EE + E Sbjct: 359 EDTDSSEDVVSTEESTADVTTEEKSEDNTEE 389 >gi|291538564|emb|CBL11675.1| transcription termination factor NusA [Roseburia intestinalis XB6B4] Length = 407 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 145/344 (42%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 3 NNELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQE 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL A+ + +IG V + + +FGR+A Q+AK VI+QK+RE Sbjct: 63 KTVVETVEDPVEQISLVNAKMINSKYEIGDVANIEVQSKEFGRIATQNAKNVILQKIREE 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K Y Sbjct: 123 ERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 183 ILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSND 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 243 PDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 303 KSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 346 >gi|270290314|ref|ZP_06196539.1| transcription termination factor NusA [Pediococcus acidilactici 7_4] gi|270281095|gb|EFA26928.1| transcription termination factor NusA [Pediococcus acidilactici 7_4] Length = 388 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 138/343 (40%), Positives = 210/343 (61%), Gaps = 1/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ + EK I + VV+ + ++ A + YG ++ VE N GDI ++ + Sbjct: 2 SKEMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ Q+SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KKVVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y ++ + E+++G V R + V VDLG + V+ + + I E P D +K Y Sbjct: 122 EREVIYEKYSQYLDEMVTGEVVRRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V RGPQ+ +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++ Sbjct: 182 VTKVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 ID VG CVG RG R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+ Sbjct: 242 PDIDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+RGQN RLA++LT + IDI +E + Sbjct: 302 ENSCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDA 344 >gi|304384867|ref|ZP_07367213.1| transcription termination factor NusA [Pediococcus acidilactici DSM 20284] gi|304329061|gb|EFL96281.1| transcription termination factor NusA [Pediococcus acidilactici DSM 20284] Length = 388 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 138/343 (40%), Positives = 210/343 (61%), Gaps = 1/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ + EK I + VV+ + ++ A + YG ++ VE N GDI ++ + Sbjct: 2 SKEMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ Q+SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KKVVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y ++ + E+++G V R + V VDLG + V+ + + I E P D +K Y Sbjct: 122 EREVIYEKYSQYLDEMVTGEVARRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V RGPQ+ +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++ Sbjct: 182 VTKVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 ID VG CVG RG R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+ Sbjct: 242 PDIDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+RGQN RLA++LT + IDI +E + Sbjct: 302 ENSCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDA 344 >gi|328465727|gb|EGF36931.1| transcription elongation factor NusA [Lactobacillus helveticus MTCC 5463] Length = 405 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 137/391 (35%), Positives = 221/391 (56%), Gaps = 10/391 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAV 73 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 74 KTVVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 133 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ Sbjct: 134 ERSHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVL 193 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 194 VTHVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 253 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE Sbjct: 254 PNIDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDE 313 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + Sbjct: 314 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKS--- 370 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISE 394 E A + +E V+ E Sbjct: 371 -----TETTAEEDSSADIDTADEDTTVQAEE 396 >gi|242373557|ref|ZP_04819131.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W1] gi|242348920|gb|EES40522.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W1] Length = 403 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 159/393 (40%), Positives = 240/393 (61%), Gaps = 14/393 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDREEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 YSENPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E Sbjct: 299 DEDNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIE---- 354 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 E +A +V G DVE V + E Sbjct: 355 -------SEEVADEIVNTGDEDVE-FDDVNLEE 379 >gi|331082958|ref|ZP_08332078.1| transcription termination factor NusA [Lachnospiraceae bacterium 6_1_63FAA] gi|330399953|gb|EGG79611.1| transcription termination factor NusA [Lachnospiraceae bacterium 6_1_63FAA] Length = 384 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 222/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D + Sbjct: 2 NTELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D + Sbjct: 242 PDVDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KSATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|256851259|ref|ZP_05556648.1| transcription termination factor NusA [Lactobacillus jensenii 27-2-CHN] gi|260660683|ref|ZP_05861598.1| transcription termination factor NusA [Lactobacillus jensenii 115-3-CHN] gi|282934727|ref|ZP_06339970.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|297206126|ref|ZP_06923521.1| transcription termination factor NusA [Lactobacillus jensenii JV-V16] gi|256616321|gb|EEU21509.1| transcription termination factor NusA [Lactobacillus jensenii 27-2-CHN] gi|260548405|gb|EEX24380.1| transcription termination factor NusA [Lactobacillus jensenii 115-3-CHN] gi|281301302|gb|EFA93603.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|297149252|gb|EFH29550.1| transcription termination factor NusA [Lactobacillus jensenii JV-V16] Length = 368 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 131/342 (38%), Positives = 210/342 (61%), Gaps = 2/342 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L+ + EK I +++++ + ++ A + Y ++ V+++ G+ + + Sbjct: 3 KEMLEAFATLETEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDLDERKGNFKVMAIK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAE Sbjct: 63 TVVDEVQDDRLEVSLKDALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ E+ E+++G V+R + V V + + V+ R + + E P D+++ + Sbjct: 123 RNHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D Sbjct: 183 TKVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DED 304 +IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA V DED Sbjct: 243 NIDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDED 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + Sbjct: 303 EKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQ 344 >gi|162454076|ref|YP_001616443.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56'] gi|161164658|emb|CAN95963.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56'] Length = 547 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 203/491 (41%), Positives = 296/491 (60%), Gaps = 35/491 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I D VA EK ID+ +++ + +I KAA+S++G ++ N +TG I LF+ + VVE Sbjct: 17 ILDQVAKEKGIDKKILVETIEAAILKAAQSVFGPTRELEARFNEDTGQIDLFQYMTVVEA 76 Query: 72 VENYTCQISLKVA-------------------------RDRDPSIDIGGVVSDPLPPMDF 106 V +IS+ + RD + G ++ F Sbjct: 77 VTEPEREISITDVDKLKLDATLGEELGFQVFWRPEDAEKARDQDKEYGDILKLKHGRTTF 136 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVI 165 GR+A Q+AKQV++Q+VR+AERD + E+KD+ GE+I G V+R E GN +IVD+G ++GV+ Sbjct: 137 GRIAAQTAKQVLLQRVRDAERDLIFNEYKDRKGELIRGIVRRFEKGNNIIVDIGRTEGVL 196 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E RE RPGDR+ +Y+ D+ RE RGPQV+LSR+ P+ + KLF EVPEIY GIV+ Sbjct: 197 TFREQTPRETYRPGDRIVAYVKDIDREARGPQVILSRSDPRLVEKLFEAEVPEIYEGIVR 256 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 + +V+R+PG+R+K+AV S D+ +DPVGACVGM+GSRVQAVV ELR EKIDIV + D A Sbjct: 257 IVSVAREPGARSKIAVTSRDADVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDRDPAR 316 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +VI A++PA V KV++DE GR+E++VP E+LSLAIGR+GQNVRLA+QLT W +DII+E Sbjct: 317 YVIAAIQPAEVHKVIVDEADGRMELVVPDEKLSLAIGRKGQNVRLAAQLTNWKLDIISET 376 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE-E 404 + ++ + Q + V E IA + GF +EE++ + E+A+I G E Sbjct: 377 KFKQMEEEAISALQQMDV----VTEQIAKSMYRLGFRALEEVSEASVEELAAIPGLGGVE 432 Query: 405 TAVEIQGRAREYLEGIDITLQK----KIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460 A I+ +A +E + + + L E L I G+ + V L E G +++E Sbjct: 433 AADRIKSQADTTMERLRQERIRSASSRTEPLTDRERLMFIRGVGDRTVVLLEEAGYRSVE 492 Query: 461 DLAGCSVDDLL 471 D+ D L Sbjct: 493 DVLREDEDRLA 503 >gi|149925033|ref|ZP_01913351.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1] gi|149814097|gb|EDM73723.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1] Length = 461 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 179/438 (40%), Positives = 271/438 (61%), Gaps = 32/438 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L + DAV EK+I RDV++ + ++ AA+ ++ +I + ETG+++LF++ Sbjct: 4 NVNLSTVIDAVCQEKNISRDVLVDTVEQAVATAAKRVF-ADREIEASFDLETGNVNLFQV 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-------------------- 105 L VVE VE ++S+ AR +IG + + ++ Sbjct: 63 LYVVETVELPMREMSIDQARRSGLEAEIGDELLFQIFYLEDDRKQAEDQAKQYPEIPALQ 122 Query: 106 -----FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-- 158 FGR+A Q+AKQVIIQ+VREAER+ Y +KDK GE+++G V+R E G+++V++ Sbjct: 123 KVNTAFGRIAAQTAKQVIIQRVREAERENLYDRYKDKKGELMTGIVRRFERGSIVVEVDN 182 Query: 159 GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 G ++ ++ + + RE+LRPGDR+ +++ DV + RGPQ++LSRTH + KLF EVPE Sbjct: 183 GRAEAILPSRDQVPRESLRPGDRIVAFVKDVDKSARGPQIILSRTHKGLVEKLFEHEVPE 242 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I+ GIV+++A +R+PG+R+K+AV S D +DPVGACVGMRGSRVQAVV ELR EKIDIV Sbjct: 243 IFEGIVRIEACAREPGARSKIAVSSRDRDVDPVGACVGMRGSRVQAVVQELRGEKIDIVP 302 Query: 279 WSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + D A FV NA++PA V++V++D + +E++VP ++LSLAIG+RGQNVRLAS+LTGW Sbjct: 303 FDEDPARFVCNAIQPAQVSRVLIDAERHTMELVVPDDKLSLAIGKRGQNVRLASRLTGWR 362 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 IDI + + ++ E V +A L G+ + +LA + E+AS+ Sbjct: 363 IDIHSRSKIRQMERRSQAEIAA----IPGVGHELAAQLFDLGWRTLRDLAVANMEELASV 418 Query: 399 EGFDEETAVEIQGRAREY 416 G D + A I A E Sbjct: 419 IGGDLDAADAIIDTANEA 436 >gi|260101365|ref|ZP_05751602.1| N utilization substance protein A [Lactobacillus helveticus DSM 20075] gi|260084817|gb|EEW68937.1| N utilization substance protein A [Lactobacillus helveticus DSM 20075] Length = 364 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 212/353 (60%), Gaps = 2/353 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 12 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAV 71 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 72 KTVVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 131 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++G V+R + V V +GN + ++ + + + E P D+++ Sbjct: 132 ERSHIIDEYSQYEDELVTGPVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVL 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 192 VTHVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE Sbjct: 252 PNIDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDE 311 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + Sbjct: 312 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDD 364 >gi|166030876|ref|ZP_02233705.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC 27755] gi|166029143|gb|EDR47900.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC 27755] Length = 401 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 147/344 (42%), Positives = 225/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ +T D LF Sbjct: 2 NTELLEALNILEKEKEISKETLLDAIENSLLNACKNHFGKADNIKVIMDHDTCDYQLFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL A D D+G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVETVEDPLEQISLDEASQLDGHYDLGDIVRVPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVRDGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 + VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KKASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIE 345 >gi|283797337|ref|ZP_06346490.1| transcription termination factor NusA [Clostridium sp. M62/1] gi|291075009|gb|EFE12373.1| transcription termination factor NusA [Clostridium sp. M62/1] gi|295090489|emb|CBK76596.1| transcription termination factor NusA [Clostridium cf. saccharolyticum K10] Length = 408 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 139/363 (38%), Positives = 223/363 (61%), Gaps = 2/363 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + + + E +I ++V+ + +S+ A ++ +G +I+V I+ E D +++ Sbjct: 2 SKELFEALNVLEKENNISKEVLFEAIENSLLTACKNHFGRADNIKVYIDREKCDFAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ Q+SL A+ DP G +V + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVENVEDPLTQVSLAEAKLMDPRHVYGDIVRVNINSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + + + ++++G V+R +V +DLG D V++ E + E +P +K + Sbjct: 122 ERTALFDHWYCREKDVVTGIVQRYVGHDVYIDLGKIDAVLKESEQVKGEEFKPTQHIKLF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ ++GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 182 ILEVKNTKKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVASND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ G+RV +VV+EL EKIDI+ W + A + NAL PA V V DE+ Sbjct: 242 PNVDPVGACVGLNGARVNSVVSELNGEKIDIINWDDNPALLIENALSPAKVIFVAADEEA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN--RQKDFNERTQFFM 363 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + Q F Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGLFDEMEMGYEQGFE 361 Query: 364 QAI 366 + + Sbjct: 362 EGL 364 >gi|332981612|ref|YP_004463053.1| NusA antitermination factor [Mahella australiensis 50-1 BON] gi|332699290|gb|AEE96231.1| NusA antitermination factor [Mahella australiensis 50-1 BON] Length = 349 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 142/346 (41%), Positives = 231/346 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E +Q + EK + +DV+L + ++ A + YGT +++ V+IN +GDI ++ + Sbjct: 4 EFMQALYKIEKEKHLPKDVLLQAIQSALLSAYKKDYGTANNVSVDINANSGDIKVYAAKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V+N +I L ARD P + +G +++ + P DF R+A ++A+ +++QK+ E E+ Sbjct: 64 VVEDVKNSAVEIDLYKARDIRPDVQLGDIINIEVTPKDFRRIAAKAARDIVLQKIHEVEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D E+ +K GEI++ TV R++ NV +DLG +G++ +ET+ E + DR+K YI Sbjct: 124 DIILDEYSEKEGEILTATVARLDRKNVYLDLGKIEGIMPMNETVPSEIYKVNDRLKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + ++ + P V++SR+HP + +LF +E+PEI++GIV ++A++R+ G R+K+AV+S Sbjct: 184 EAKKGGKSPNVIVSRSHPGLVKRLFELEIPEIHDGIVDIRAIAREAGHRSKVAVYSKYDK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+G+C+G +G+R+Q ++ ELR E+IDIV WS F+ NAL PA V +V+L+E Sbjct: 244 IDPIGSCIGPKGTRIQTIMNELRGERIDIVEWSLMPERFIANALSPAKVLEVILNEKEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 VIVPK QLSLAIG+ GQN RLA++LTGW IDI T ++ +N K Sbjct: 304 ARVIVPKNQLSLAIGKEGQNARLAAKLTGWKIDIKTPDQQEVNETK 349 >gi|153855238|ref|ZP_01996404.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814] gi|149752237|gb|EDM62168.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814] Length = 399 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 147/344 (42%), Positives = 227/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ +N ET + L+ Sbjct: 2 NTELLEALNILEKEKDISKETLLDAIENSLMNACKNHFGKTDNIKLIMNKETCEYQLYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEEVEDKLEQISLEDAKEIDSKFELGDIVHIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQAIE 345 >gi|331701346|ref|YP_004398305.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329128689|gb|AEB73242.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 398 Score = 442 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 141/345 (40%), Positives = 216/345 (62%), Gaps = 1/345 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+ EK I ++VV+ + ++ A + YG ++ V + + G++ ++ + Sbjct: 2 SKELLGALSALEEEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVSFDDKKGEMHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++V + Q+SL A + + ++G + + P +FGR+A Q+AKQVI+Q+VREA Sbjct: 62 KTVVDDVVDDQLQVSLDEALEINKGYELGDEIKFEVTPKNFGRIAAQTAKQVIMQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + E+ E+++GTV+R + V V+LG + V+ + + E RP DR+K Y Sbjct: 122 ERENVFDEYSKYEDELVTGTVERQDTRFVYVNLGKVEAVMGSKDQMPNEVYRPQDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +GPQV +SRT + +LF EVPEIY+G V++ +++R+ G RAK+AV S++ Sbjct: 182 VTKVENATKGPQVFVSRTATGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S IDPVG VG RG RVQ +V EL E +DIV W D A+++ N+L PA V V+ D+D Sbjct: 242 SDIDPVGTAVGPRGQRVQTIVNELHGENMDIVEWDEDDASYIANSLNPAEVIDVIFDDDN 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 R VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E Sbjct: 302 ERACTVIVPDYQLSLAIGKKGQNARLAAKLTGFKIDIKSETEAKE 346 >gi|254995056|ref|ZP_05277246.1| transcription elongation factor NusA [Anaplasma marginale str. Mississippi] Length = 512 Score = 442 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 205/536 (38%), Positives = 325/536 (60%), Gaps = 51/536 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG + Sbjct: 4 LYNFDNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYGDCK-IKASIDRKTGVV 62 Query: 61 SLFRLLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDF 106 S+ R VV + ++ + + + A + +G ++ +PLPP+D Sbjct: 63 SISRQALVVNDDMSFDSEQYGIPLGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDV 122 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 + + A++ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + Sbjct: 123 DYNSAKVARRKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLP 182 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 TI E RP DRVK + +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV Sbjct: 183 VYNTIRGEVFRPNDRVKD-VEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVS 241 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +KA++RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+ELR E V Sbjct: 242 IKALARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELRGEDRRCV-------V 294 Query: 286 FVINALRP---------AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 F+ P A V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L G Sbjct: 295 FIR----PREVCSERDSAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVG 350 Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 W ID+I +E +S + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI Sbjct: 351 WEIDVIGDETESTRKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEIT 410 Query: 397 SIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456 +I+GF+EE AVE++ RA EYL + ++ + VSEE+ +P ++ + V L E GI Sbjct: 411 AIDGFNEEIAVELKKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGI 470 Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 +++ED+A D+ + K+QV+S+I+ +R +MGWI Sbjct: 471 RSVEDIASMCTDEFYDM--------------VPKARLSKEQVDSIILESRKRMGWI 512 >gi|323466337|gb|ADX70024.1| transcription elongation factor NusA [Lactobacillus helveticus H10] Length = 410 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 214/354 (60%), Gaps = 2/354 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 19 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAV 78 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 79 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 138 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ Sbjct: 139 ERSHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQRDQMPNEVYNPQDQIRVL 198 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 199 VTHVGSDSKGVQIVVSRTAPNVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 258 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE Sbjct: 259 PNIDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDE 318 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + Sbjct: 319 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDS 372 >gi|225874866|ref|YP_002756325.1| transcription termination factor NusA [Acidobacterium capsulatum ATCC 51196] gi|225794228|gb|ACO34318.1| transcription termination factor NusA [Acidobacterium capsulatum ATCC 51196] Length = 548 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 174/418 (41%), Positives = 250/418 (59%), Gaps = 9/418 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q +A++ +K ID +VV+ + D+I A R Y T ++R E++ ETG+I + V Sbjct: 5 LYQSIEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYIYKAV 64 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE +E+ QI+L+ AR P +++GG + P GR+A Q AKQVI QKVREA Sbjct: 65 VETPELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ +VGE+++ TVKRVE +VI DLG ++ + + E E G+RV+ Sbjct: 125 ERDTVFNEYAHRVGEVLTATVKRVEMQDVIFDLGKAEARMPKREQSRLEQFSVGERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIAVMSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVSIADLS 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---- 360 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ Q Sbjct: 305 EKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMGGFAQGGTA 364 Query: 361 -FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + + E I LVA G VE LA + ++ I G E+T +I R Y Sbjct: 365 TAIEEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVRHYF 422 >gi|254519187|ref|ZP_05131243.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA] gi|226912936|gb|EEH98137.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA] Length = 360 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 147/359 (40%), Positives = 232/359 (64%), Gaps = 4/359 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDIS 61 E + + +K I D++ S + D++ A + Y + +++V IN ETG+I Sbjct: 2 NQEFIGALKEIVKDKGISEDLIFSTIEDALVAAYKKNYASPTTSAQNVKVSINRETGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVE+V + +ISL+ A++ P D+ +V + P +FGRVA Q AK V+ Q+ Sbjct: 62 VYAQKVVVEDVYDDVTEISLEEAKEVSPRYDLDDIVDLEVTPKNFGRVAAQLAKGVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER+ Y E+K+ +II+GTV R + GNV V+LG + I +E I RE + ++ Sbjct: 122 IREAERNIVYSEYKELEYDIITGTVLRKDKGNVFVNLGRIETSIGPNEQIPREEYKFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ +V+ +G Q+L+SRTHP + +LF +EVPEIY G+V++K++SR+ GSR+K+AV Sbjct: 182 VKLYVVEVKNGSKGAQILVSRTHPGLVKRLFELEVPEIYEGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DP+GACVG +G+RVQ +V EL+ EKIDI+ WS + F+ +L PA V +VV Sbjct: 242 YSNDENVDPMGACVGPKGTRVQNIVNELKGEKIDIIKWSKNPEEFIAASLSPAKVLEVVA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 E+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + +++ E + Sbjct: 302 CEETKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQSDALKEETVEETIE 360 >gi|77919153|ref|YP_356968.1| transcription elongation factor NusA [Pelobacter carbinolicus DSM 2380] gi|77545236|gb|ABA88798.1| NusA antitermination factor [Pelobacter carbinolicus DSM 2380] Length = 406 Score = 441 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 183/400 (45%), Positives = 254/400 (63%), Gaps = 2/400 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L I + V EK IDR V++ + ++ AA Y D+ N G++ LF + V Sbjct: 5 LNHIIEQVVKEKGIDRGVLVEALESAVLSAANKKYRNTRDLEAHFNDGLGEVELFEFVTV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +I L+ AR+ D +++G + + +F R+A Q+AKQVIIQKVREAER+ Sbjct: 65 VDEVVDSYKEIDLEEAREIDEEVEVGDSLGMKIESGNFSRIAAQTAKQVIIQKVREAERE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + Y EFKD+VGE+++G V+R E G++IVDLG ++G++ E + REN R GDR + I + Sbjct: 125 KIYNEFKDRVGELVNGIVRRYERGDLIVDLGLAEGLLPHREQVPRENYRQGDRARVLISE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+ +GPQ++LSRTHP + LF EVPEI GIV++KAV+R+ GSR K+AV S D + Sbjct: 185 VKISTKGPQIILSRTHPGLVASLFQFEVPEIAEGIVEIKAVAREAGSRTKIAVASYDPDV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDIV WSPD FV +L PA VT++ LD D + Sbjct: 245 DPVGACVGMRGSRVQNVVSELRGEKIDIVPWSPDVGRFVCASLAPAEVTRIYLDNDEQAL 304 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 EVIVP +QLSLAIG++GQNVRLA++LTGW IDI +E + ++ E A + Sbjct: 305 EVIVPDDQLSLAIGKKGQNVRLAARLTGWNIDIKSETRAAEAAKEALGESVAV-EDASSE 363 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 D V E V+ + E+ + +EE +VE Sbjct: 364 DVASEDATVQES-PSVDAVLDDASDEVTEVSDSNEEGSVE 402 >gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191] gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191] Length = 463 Score = 441 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 167/461 (36%), Positives = 270/461 (58%), Gaps = 29/461 (6%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N EL+ +++ EK+I RD ++ + D++ A R G + I +INPE GDI Sbjct: 1 MEGNPKELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIK 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 F++L +VE V N +ISL+ A+ D ++GG +++ L DF R+A Q AKQV+IQK Sbjct: 61 AFQVLNIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR ER+ Y EFK + GE+I+G+V+R +++VDLG + ++ E I RE G R Sbjct: 121 VRGIERENTYKEFKPREGEVITGSVRRFSDRDIVVDLGKVEAILPYSEQIKRERYSNGSR 180 Query: 182 VKSYIYDV-------------------------RREQRGPQVLLSRTHPQFMVKLFHMEV 216 +K+ I V + QRGP V+LSRT P F+ LF +EV Sbjct: 181 IKAIITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEV 240 Query: 217 PEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 PEI GIV++KA+ RDPG RAK+ V S D+ +DP+G CVGMRG R++A++ EL E+ID+ Sbjct: 241 PEIGEGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDL 300 Query: 277 VVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 + +S D T ++N++ PA V ++ + + +IVP +QL++AIG+ QN++LAS+LT Sbjct: 301 IPYSEDVTTMIMNSIAPARANSVKIISAEEKKALIIVPDDQLAIAIGKDWQNIKLASKLT 360 Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 GW +++ +E + Q + + A LV GF+ VE++A ++ + Sbjct: 361 GWELEVKSESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHL 420 Query: 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 A+++G E++A +I A++YLE ++ ++E V+++ Sbjct: 421 ATVQGIGEKSAAKIIEGAKKYLETQ---GEEVLQEEAVNDD 458 >gi|242242549|ref|ZP_04796994.1| transcription elongation factor NusA [Staphylococcus epidermidis W23144] gi|242233976|gb|EES36288.1| transcription elongation factor NusA [Staphylococcus epidermidis W23144] Length = 407 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 156/407 (38%), Positives = 241/407 (59%), Gaps = 5/407 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + + D ++ + E ELA E + D +T Sbjct: 359 ADEIVNSGDEDVEFDNVNLEETNLTSTELAAETDEEKTAKTEEDNDT 405 >gi|224476389|ref|YP_002633995.1| transcription elongation factor NusA [Staphylococcus carnosus subsp. carnosus TM300] gi|222420996|emb|CAL27810.1| putative transcription elongation protein NusA [Staphylococcus carnosus subsp. carnosus TM300] Length = 437 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 153/398 (38%), Positives = 240/398 (60%), Gaps = 12/398 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYEAARNVRVELNMDEGTFH 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVV++V + ++ + A +++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVDDVFDDREEVDISTALEKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEEDIVTGIIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V +K+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVVIKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G RV+A+V EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGVRVEAIVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DEANQSTTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGIYPVP----- 353 Query: 362 FMQAINVDEIIAHLLVAE---GFADVEELACVKISEIA 396 + D+ + L E G D E V+ E++ Sbjct: 354 --EVEETDDEVTEDLTEEVVVGQVDEEPEVDVEAEEVS 389 >gi|167758065|ref|ZP_02430192.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704] gi|167663962|gb|EDS08092.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704] Length = 398 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ ++ T D LF Sbjct: 2 NTELLEALNILEEEKDISKETLLDAIENSLLNACKNHFGKADNIKLIMDRTTCDYQLFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEDVEDKLEQISLEDAKEIDSQYELGDIVQIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVIEVKEGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIE 345 >gi|148657848|ref|YP_001278053.1| NusA antitermination factor [Roseiflexus sp. RS-1] gi|148569958|gb|ABQ92103.1| NusA antitermination factor [Roseiflexus sp. RS-1] Length = 442 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 144/343 (41%), Positives = 220/343 (64%), Gaps = 3/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R G +I V ++P TG + Sbjct: 2 KSDFYAAISQIASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPVTGMARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV++V + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q + Sbjct: 62 YAEKQVVDDVFDERFEIDLESARKIKPDVELGESVVVEATPRDFGRIAAQTAKQVILQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ER+ Y E+ D+ GE+++ TV+R+ GNVI+++G ++ ++ E + + G R+ Sbjct: 122 KEVEREHIYGEYMDREGELVTATVQRIAKGNVILEMGKAEAILPPKEQVETDRYYHGQRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ ++RRE RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV Sbjct: 182 KVYLMEIRREDRGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + IDPVG+CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLR 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D VIVP +QLSLAIG+ GQNVRLA++LTGW IDI + Sbjct: 302 DDEHAATVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDIKSAS 344 >gi|319401444|gb|EFV89654.1| transcription elongation protein nusA [Staphylococcus epidermidis FRI909] Length = 407 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 156/407 (38%), Positives = 241/407 (59%), Gaps = 5/407 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + + D ++ + E ELA E + D +T Sbjct: 359 ADEIVNSGDEDVEFDNVNLEETNLTSTELAAETDKEKTAKTEEDNDT 405 >gi|315924374|ref|ZP_07920596.1| transcription termination factor NusA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622253|gb|EFV02212.1| transcription termination factor NusA [Pseudoramibacter alactolyticus ATCC 23263] Length = 411 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 133/373 (35%), Positives = 226/373 (60%), Gaps = 1/373 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L D + EK I+++ ++ + SI++A R YG+ ++ V + +G+I ++ Sbjct: 2 NAEFLAALDVLEKEKGINKEELIEAIESSIEQAYRKNYGSEQNVEVRFDRSSGEIQVYTT 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + + +L A D + +IG ++ + P FGR+A Q+AKQ+I QK++E Sbjct: 62 WLVVDEVMDPDKEKTLAEALAIDEAAEIGQMIEKKIAPRHFGRIAAQNAKQMIYQKIKEQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F ++ E+++G + V+ V VD+G++ G++ E I E+ + G R++ Y Sbjct: 122 ERKNIYDTFIERQDEVVTGKIDHVDRRMVYVDIGDATGLMPLSEQIPTEHYKAGQRIRVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V+ +GP++++SRTH + +L EVPEIY+G+V V++++R+ GSR+K+AV S+D Sbjct: 182 ITSVKETSKGPEIMVSRTHSGLLKRLLEEEVPEIYDGVVDVESIAREAGSRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVG+CVG RG+R+Q ++ EL EKID++ ++ D F+ NAL PA V +V+ + Sbjct: 242 STVDPVGSCVGYRGTRIQNIIDELGGEKIDVIRYNEDIHEFIANALSPANVIEVLANPRD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + +V Q SLAIG+ GQNVRLA +LTGW IDI + + + + F Q Sbjct: 302 KQAYAVVDDFQFSLAIGKEGQNVRLAVRLTGWKIDIKSASDFQAMLD-ENPNLREEFSQE 360 Query: 366 INVDEIIAHLLVA 378 ++++ +L Sbjct: 361 KETEKLVDDILQE 373 >gi|160892797|ref|ZP_02073587.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50] gi|156865838|gb|EDO59269.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50] Length = 393 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 149/402 (37%), Positives = 237/402 (58%), Gaps = 15/402 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + EK+I +D++L + S++ A + + T +I V ++ ETG+ ++ E Sbjct: 3 EIIEALNQLEKEKNISKDILLDAIERSLKAACKKDFDTDENIDVVMDRETGEFHVYAKKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE QISL+ A+ + D+G +++ + DFGR+A Q A+ VI+Q + E+ER Sbjct: 63 VVEEVERPATQISLEKAKMMNSKYDLGDIINIEITTKDFGRIAAQRARNVIVQAINESER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 D Y F K +II+G V+R N+ V L ++ +++ E + E GDR+K Y+ Sbjct: 123 DAIYDHFYTKEKDIITGIVQRYVGNNINVSLDDKTEAILKESEMVPGEVYNRGDRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ RGP++ +SRTHP + +LF EV EI +G V++K+ R+ GSR+K+AV+S D Sbjct: 183 TEVKKGSRGPKITVSRTHPDLVKRLFEKEVTEIADGTVEIKSSCREAGSRSKIAVYSHDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ GSRV VV +L EKIDI+ W + A F+ NAL P+ V V +D + Sbjct: 243 NVDPVGACVGVNGSRVNNVVEDLNGEKIDIICWDENPAIFIKNALSPSEVIAVDVDLNEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG++GQN RLA++LTG+ IDI +E + F + Sbjct: 303 SAFVVVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKSESQAEEMGY---------FSEEN 353 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + E F +++++ E S+E D E E Sbjct: 354 DDYKEPEQ---EEAFDNIDDIVDGSYEE--SLEQQDTEKVKE 390 >gi|251778646|ref|ZP_04821566.1| transcription termination factor NusA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082961|gb|EES48851.1| transcription termination factor NusA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 149/374 (39%), Positives = 236/374 (63%), Gaps = 4/374 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y + ++++ IN E G+I Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A+ +P ++ VV + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDVVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R + Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEM 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V + Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQD 361 Query: 362 FMQAINVDEIIAHL 375 + V E +A L Sbjct: 362 VDMSEEVTENVAEL 375 >gi|257425320|ref|ZP_05601745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 55/2053] gi|257427981|ref|ZP_05604379.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430614|ref|ZP_05606996.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus 68-397] gi|257433374|ref|ZP_05609732.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus E1410] gi|257436216|ref|ZP_05612263.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M876] gi|282914043|ref|ZP_06321830.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M899] gi|282924088|ref|ZP_06331764.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C101] gi|293501075|ref|ZP_06666926.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 58-424] gi|293510037|ref|ZP_06668745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M809] gi|293526623|ref|ZP_06671308.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M1015] gi|257271777|gb|EEV03915.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274822|gb|EEV06309.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278742|gb|EEV09361.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus 68-397] gi|257281467|gb|EEV11604.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus E1410] gi|257284498|gb|EEV14618.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M876] gi|282314060|gb|EFB44452.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C101] gi|282322111|gb|EFB52435.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M899] gi|290920695|gb|EFD97758.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M1015] gi|291096080|gb|EFE26341.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 58-424] gi|291466981|gb|EFF09499.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M809] Length = 391 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAHEAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDVALEDADTTESTEEVTDVSVE 383 >gi|188588167|ref|YP_001920615.1| transcription elongation factor NusA [Clostridium botulinum E3 str. Alaska E43] gi|188498448|gb|ACD51584.1| transcription termination factor NusA [Clostridium botulinum E3 str. Alaska E43] Length = 384 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 148/374 (39%), Positives = 236/374 (63%), Gaps = 4/374 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y + ++++ IN E G+I Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R + Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEM 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V + Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQD 361 Query: 362 FMQAINVDEIIAHL 375 + V E +A L Sbjct: 362 VDMSEEVTENVAEL 375 >gi|94971244|ref|YP_593292.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|94553294|gb|ABF43218.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 534 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 167/422 (39%), Positives = 250/422 (59%), Gaps = 8/422 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + DA++ EK ID VV++ + D+I A R Y T + R ++ E+G I + + + Sbjct: 4 ELYNVIDALSREKGIDPQVVVTAVEDAIVVATRKFYKTGENFRAVLDKESGQIRAYAVRQ 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV +E+E+ Q+ L+ AR+ DP+ ++GG + GR+A Q AKQVI QKVRE Sbjct: 64 VVINEDELEDPATQVPLEEARELDPAAEVGGELLIEKKTDMLGRIAAQLAKQVIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD Y E+ +VGEI++ T+KR E ++I D+G ++ + + E E+ G+RV+ Sbjct: 124 AERDTVYNEYIGRVGEIVNATMKRNEGPDLIWDIGKAEARMPKKEQSRLESFAIGERVRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V + +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S Sbjct: 184 VITRVEKASKGPQVIVSRAAPELVSHLFQTEVPEIYDNTVVIRAIAREAGERTKIAVMSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +D VGACVGM+G RVQ+++ ELR EKIDI+ + D+ TF AL+PA V++V + E Sbjct: 244 DKDVDAVGACVGMKGMRVQSIIRELRGEKIDIIEYHEDAVTFAEKALQPAKVSRVTILES 303 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF----NERT 359 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ N Sbjct: 304 GDKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMSALVNPSI 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + ++ E I L A G VE LA + ++ + G +T +I Y Sbjct: 364 TPLDKVPDLGEAIIEKLSAAGINSVEALADMTPEQLEEVPGIGPKTVDKIFVAVNAYFSA 423 Query: 420 ID 421 +D Sbjct: 424 LD 425 >gi|154485019|ref|ZP_02027467.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC 27560] gi|149733972|gb|EDM50091.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC 27560] Length = 408 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 223/348 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + EK I ++ + + +++ A ++ + ++ V ++ ETGD ++ Sbjct: 2 NKELIEALNILEKEKDISKESLFEAIENNLVVAYKNNFNKADNVTVTMDRETGDFHIYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ AR + ++G +V+ + DFGR+A QSAK I+QK+RE Sbjct: 62 KEVVEEVMDPVTEISLEDARSIKGTYELGDIVNIEIQSKDFGRIATQSAKNGILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R+ N+ V+LG D V+ E E+ RP +R+K Y Sbjct: 122 ERKSLYEQYFEKQDDIVTGIVQRINGKNISVNLGKVDTVLMEKEQAKGEHFRPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ RGP++++SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S++ Sbjct: 182 ITEVKDNGRGPRIVVSRTHPGLVKRLFEQEVTEIQDGTVEIKSIAREAGSRTKMAVWSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ G+RV AVV ELRDEKIDIV WS + A + NAL P+ V V+ D D Sbjct: 242 EDVDAVGACVGVNGARVNAVVDELRDEKIDIVNWSENPAILIENALSPSKVVAVLADPDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + Sbjct: 302 KEALVVVPDFQLSLAIGKEGQNARLAAKLTGFKIDIKSESQAKEEGIQ 349 >gi|289550942|ref|YP_003471846.1| Transcription termination protein NusA [Staphylococcus lugdunensis HKU09-01] gi|289180474|gb|ADC87719.1| Transcription termination protein NusA [Staphylococcus lugdunensis HKU09-01] Length = 387 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 150/368 (40%), Positives = 227/368 (61%), Gaps = 1/368 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-I 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + E +A I Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDACEAGIYPIVEAENHADEAEI 364 Query: 367 NVDEIIAH 374 +D+ Sbjct: 365 EIDDESIE 372 >gi|70726649|ref|YP_253563.1| transcription elongation factor NusA [Staphylococcus haemolyticus JCSC1435] gi|68447373|dbj|BAE04957.1| transcription termination-antitermination factor [Staphylococcus haemolyticus JCSC1435] Length = 410 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 148/359 (41%), Positives = 225/359 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYTEFIDKEDDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDAGIYPVIESEELAEDIV 363 >gi|49483429|ref|YP_040653.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MRSA252] gi|82750867|ref|YP_416608.1| transcription elongation factor NusA [Staphylococcus aureus RF122] gi|258423893|ref|ZP_05686778.1| transcription termination factor NusA [Staphylococcus aureus A9635] gi|282903821|ref|ZP_06311709.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C160] gi|282905584|ref|ZP_06313439.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908559|ref|ZP_06316389.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910838|ref|ZP_06318641.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WBG10049] gi|282918965|ref|ZP_06326700.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C427] gi|283958009|ref|ZP_06375460.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus A017934/97] gi|295427753|ref|ZP_06820385.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591289|ref|ZP_06949927.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MN8] gi|49241558|emb|CAG40244.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus MRSA252] gi|82656398|emb|CAI80817.1| transcription termination-antitermination factor [Staphylococcus aureus RF122] gi|257845922|gb|EEV69951.1| transcription termination factor NusA [Staphylococcus aureus A9635] gi|282316775|gb|EFB47149.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C427] gi|282325443|gb|EFB55752.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327621|gb|EFB57904.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330876|gb|EFB60390.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595439|gb|EFC00403.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C160] gi|283790158|gb|EFC28975.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus A017934/97] gi|295128111|gb|EFG57745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576175|gb|EFH94891.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MN8] gi|302332872|gb|ADL23065.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus JKD6159] gi|312438354|gb|ADQ77425.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH60] gi|315194154|gb|EFU24547.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS00] gi|323441046|gb|EGA98753.1| transcription elongation factor NusA [Staphylococcus aureus O11] gi|323443915|gb|EGB01526.1| transcription elongation factor NusA [Staphylococcus aureus O46] Length = 391 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDVALEDADTTESTEEVTDVSVE 383 >gi|27467860|ref|NP_764497.1| transcription elongation factor NusA [Staphylococcus epidermidis ATCC 12228] gi|251810697|ref|ZP_04825170.1| transcription elongation factor NusA [Staphylococcus epidermidis BCM-HMP0060] gi|282876302|ref|ZP_06285169.1| transcription termination factor NusA [Staphylococcus epidermidis SK135] gi|27315405|gb|AAO04539.1|AE016747_36 transcription termination-antitermination factor [Staphylococcus epidermidis ATCC 12228] gi|251805857|gb|EES58514.1| transcription elongation factor NusA [Staphylococcus epidermidis BCM-HMP0060] gi|281295327|gb|EFA87854.1| transcription termination factor NusA [Staphylococcus epidermidis SK135] Length = 407 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 153/396 (38%), Positives = 237/396 (59%), Gaps = 5/396 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + + + D ++ + E ELA + Sbjct: 359 ADEIVNSGDEDVEFDNVNLEETNLTSTELAAETDED 394 >gi|223044244|ref|ZP_03614281.1| transcription termination factor NusA [Staphylococcus capitis SK14] gi|222442394|gb|EEE48502.1| transcription termination factor NusA [Staphylococcus capitis SK14] Length = 407 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 156/396 (39%), Positives = 240/396 (60%), Gaps = 5/396 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 YSDNADIDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + E Sbjct: 299 DEENQSTIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + + D + + E ELA E Sbjct: 359 ADEIVNTGDEDVEFDDVNLEESNLTTAELAAETDEE 394 >gi|268319261|ref|YP_003292917.1| transcription elongation factor NusA [Lactobacillus johnsonii FI9785] gi|262397636|emb|CAX66650.1| transcription elongation factor NusA [Lactobacillus johnsonii FI9785] Length = 394 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 137/380 (36%), Positives = 220/380 (57%), Gaps = 2/380 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 2 SKEMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 122 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 S IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DE Sbjct: 242 SDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 302 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQET 361 Query: 364 QAINVDEIIAHLLVAEGFAD 383 NV +AE D Sbjct: 362 TNDNVSNEETPEAIAEQIED 381 >gi|329736283|gb|EGG72555.1| transcription termination factor NusA [Staphylococcus epidermidis VCU028] Length = 404 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 161/413 (38%), Positives = 244/413 (59%), Gaps = 21/413 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIE---- 354 Query: 362 FMQAINVDEIIAHLLVAEGFADVE------ELACVKISEIASIEGFDEETAVE 408 E +A +V G DVE E + +E+A+ DE+ E Sbjct: 355 -------SEEVADEIVNSGDEDVEFDNVNLEETNLTSTELAAEN--DEDKTEE 398 >gi|239907795|ref|YP_002954536.1| transcription elongation protein NusA [Desulfovibrio magneticus RS-1] gi|239797661|dbj|BAH76650.1| transcription elongation protein NusA [Desulfovibrio magneticus RS-1] Length = 463 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 170/411 (41%), Positives = 266/411 (64%), Gaps = 7/411 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++ Sbjct: 1 MTELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ + +I L A+ DP++ + + L D GR+A QSAKQVIIQ++R Sbjct: 61 KVVVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+ Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++I +V RGPQ+++SRTH +M LF EVPE+ +G V++ AV+RDPGSRAK+AV S Sbjct: 181 AFIIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVIS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ A++ NAL P+ VT++ +DE Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI+TE R ++ N +F Sbjct: 301 DEKSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTES-----RFREANASKKFLE 355 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 Q +V EI ++A GF +E+LA I +I G +++ + Sbjct: 356 QLASVAEIHVDNIIAAGFVSMEQLAEADDEAIDAIVGMTPSKRDDLRAALK 406 >gi|289423074|ref|ZP_06424889.1| transcription termination factor NusA [Peptostreptococcus anaerobius 653-L] gi|289156405|gb|EFD05055.1| transcription termination factor NusA [Peptostreptococcus anaerobius 653-L] Length = 424 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 168/437 (38%), Positives = 264/437 (60%), Gaps = 26/437 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +Q + + ++ ID++V+L + ++ A + +G+ ++R+++N ETGDI ++ Sbjct: 2 NVEFMQALEELVKDRGIDKEVLLETIEQALTSAYKKNFGSAQNVRIDLNRETGDIKVYSQ 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + + +I L AR+ P+ ++G ++ + PMDFGR+A Q+AKQ+++QK+R Sbjct: 62 RVVVDEQDLYDNFLEIELSEAREISPNYELGDIIEHEVTPMDFGRIAAQTAKQIVVQKIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPG 179 EAER+ Y EF +K E+I+G + R + V +G +GV+ E I E + G Sbjct: 122 EAEREMTYNEFIEKQDELITGEISRTSQRDGKCIVFAQIGKGEGVLLASEQIRGEEYKIG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ DV + + PQ+LLSR+H + +LF MEVPEI +G VQ+K++SR+ GSR K+ Sbjct: 182 TNMKFYVVDVNKTSKNPQILLSRSHTGLVKRLFEMEVPEIQDGTVQIKSISREAGSRTKM 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D +IDP+GACVG +GSRV+ +V EL DEKIDIV +S D FV +L P+ VTKV Sbjct: 242 AVLSTDENIDPIGACVGTQGSRVRNIVDELGDEKIDIVKYSDDIGQFVEASLSPSKVTKV 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++E VIVP QLSLAIG+ GQN RLA++LT W IDI E + + ++ Sbjct: 302 FVNEKEKSAVVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPESDFTEEDERAL---- 357 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++I + L E EE A +++E E D+E A+E A+E +E Sbjct: 358 --------LEKIASDKLAVE-----EEKASKELAEENPAEDMDKEVALE---SAQEAMEP 401 Query: 420 IDITLQKKIRELGVSEE 436 D+ + ++I G EE Sbjct: 402 ADVEVAEEILSDGEVEE 418 >gi|187934771|ref|YP_001885468.1| transcription elongation factor NusA [Clostridium botulinum B str. Eklund 17B] gi|187722924|gb|ACD24145.1| transcription termination factor NusA [Clostridium botulinum B str. Eklund 17B] Length = 384 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 147/374 (39%), Positives = 238/374 (63%), Gaps = 4/374 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y + ++++ IN E G+I Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R ++ Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ W+ D A F+ NAL PA V + Sbjct: 242 YSNDEEVDAMGACVGPKGIRVQNIVNELKNEKIDIIKWNKDPAEFISNALSPAKVISAEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEKEKAMDQN 361 Query: 362 FMQAINVDEIIAHL 375 + +V E +A L Sbjct: 362 ADISEDVTENVAEL 375 >gi|307243330|ref|ZP_07525494.1| transcription termination factor NusA [Peptostreptococcus stomatis DSM 17678] gi|306493277|gb|EFM65266.1| transcription termination factor NusA [Peptostreptococcus stomatis DSM 17678] Length = 423 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 167/406 (41%), Positives = 247/406 (60%), Gaps = 18/406 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q D + ++ ID+DV+L + ++ A + +G+ ++R+++N ETGDI ++ Sbjct: 2 NTEFIQALDELVRDRGIDKDVLLETIEQALTSAYKKNFGSAQNVRIDMNRETGDIKVYSQ 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + + +I L AR+ +P+ ++G ++ + P DFGR+A Q+AKQ+++QK+R Sbjct: 62 RVVVDESDLYDNFLEIELSEAREINPNYELGDIIEHEVTPKDFGRIAAQTAKQIVVQKIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPG 179 EAER+ Y EF +K E+++G + R + V V +G +GV+ + E I E+ + G Sbjct: 122 EAEREMTYNEFLEKQDELVTGEISRTSSRDGKQIVFVQIGKGEGVLLQSEQIRNEDYKIG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ +V R + PQ+LLSRT+ + +LF MEVPEI GIV +K++SR+ GSR K+ Sbjct: 182 SNMKFYVLEVNRTNKNPQILLSRTNAGLVKRLFEMEVPEIQEGIVHIKSISREAGSRTKM 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D +IDP+GACVG +G+RV+ +V EL DEKIDIV +S D ATF+ AL P+ VT+V Sbjct: 242 AVKSIDENIDPIGACVGTQGARVRNIVDELGDEKIDIVKYSDDPATFIEAALSPSKVTRV 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +DE VIVP QLSLAIG+ GQN RLA++LT W IDI E E + E Sbjct: 302 FIDEANKSAIVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPESEFGPEEEAALLEEI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI-EGFDEE 404 + A E A LV E A +K E A I G DEE Sbjct: 362 EKNKIAA---EEEAKRLVEE--------AELKAHEEAEILAGQDEE 396 >gi|167772658|ref|ZP_02444711.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM 17241] gi|167665136|gb|EDS09266.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM 17241] Length = 358 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 145/347 (41%), Positives = 213/347 (61%), Gaps = 3/347 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ + E + + EK I R ++ +A +I A R G D V+INP+TG Sbjct: 7 MNTSNTEFFEALALMEKEKGIPRSLLAEKIATAIGNAIRRDMGASEDSVVDINPDTGRFY 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + VV+++ + +I + A D +G +V PL FGR+A Q+AK VI Q Sbjct: 67 VAMRKTVVDDLLDPAQEILPEEAVKYDSGATLGDIVEIPLDTKQFGRIAAQTAKHVIRQG 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPG 179 +REAER + + EF + +I++ TV R + GNV ++LG S+ V+ + E + E G Sbjct: 127 IREAERGQLFAEFSSRQHDIVTATVLRTDQVRGNVTLELGKSEAVLPKGEQVPGEEYADG 186 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K Y+ DV ++GP++++SRTHP + +LF MEVPEI++G ++VK++SR+ GSR K+ Sbjct: 187 ARIKVYVVDVVNGEKGPRIMISRTHPGLVKRLFEMEVPEIFDGTIEVKSISREAGSRTKI 246 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+D ++DPVGAC+G +G RV A+V EL EKID+V +S D A F+ AL PA V V Sbjct: 247 AVWSNDENVDPVGACIGPKGQRVSAIVEELGGEKIDVVRYSADPAEFIAAALSPADVVSV 306 Query: 300 VLDED-VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D D V VP QLSLAIG +GQN RLA++LTGW IDI E Sbjct: 307 EVDPDGAKSCRVSVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPES 353 >gi|293366770|ref|ZP_06613446.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W2(grey)] gi|291319071|gb|EFE59441.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W2(grey)] gi|329736653|gb|EGG72919.1| transcription termination factor NusA [Staphylococcus epidermidis VCU045] Length = 407 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 155/384 (40%), Positives = 233/384 (60%), Gaps = 13/384 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIE---- 354 Query: 362 FMQAINVDEIIAHLLVAEGFADVE 385 E +A +V G DVE Sbjct: 355 -------SEEVADEIVNSGDEDVE 371 >gi|315658444|ref|ZP_07911316.1| transcription termination factor NusA [Staphylococcus lugdunensis M23590] gi|315496773|gb|EFU85096.1| transcription termination factor NusA [Staphylococcus lugdunensis M23590] Length = 387 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 150/368 (40%), Positives = 227/368 (61%), Gaps = 1/368 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-I 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + E +A I Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIVEAENHADEAEI 364 Query: 367 NVDEIIAH 374 +D+ Sbjct: 365 EIDDESIE 372 >gi|283470481|emb|CAQ49692.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ST398] Length = 391 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 156/395 (39%), Positives = 239/395 (60%), Gaps = 15/395 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE---EDSINRQKDFNER 358 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E I + + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 T+ + +VD EE+ V + Sbjct: 359 TEEDVALEDVDTT----------ESTEEVTDVSVE 383 >gi|228475002|ref|ZP_04059730.1| transcription termination factor NusA [Staphylococcus hominis SK119] gi|228270987|gb|EEK12375.1| transcription termination factor NusA [Staphylococcus hominis SK119] Length = 408 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 154/388 (39%), Positives = 232/388 (59%), Gaps = 4/388 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKADEIVF 364 Query: 368 VDEIIAHL----LVAEGFADVEELACVK 391 ++ + L E A V Sbjct: 365 SEDKDIEIDDINLEETNLTTTELSAEVD 392 >gi|329724329|gb|EGG60841.1| transcription termination factor NusA [Staphylococcus epidermidis VCU144] Length = 407 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 153/396 (38%), Positives = 237/396 (59%), Gaps = 5/396 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + + + D ++ + E ELA + Sbjct: 359 ADEIVNSGDEDVEFDNVNLEETNLTSTELAAETDED 394 >gi|161507684|ref|YP_001577638.1| transcription elongation factor NusA [Lactobacillus helveticus DPC 4571] gi|160348673|gb|ABX27347.1| transcription termination-antitermination factor [Lactobacillus helveticus DPC 4571] Length = 393 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 214/354 (60%), Gaps = 2/354 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 2 SKEMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ Sbjct: 122 ERSHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTHVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE Sbjct: 242 PNIDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + Sbjct: 302 EEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDS 355 >gi|314936573|ref|ZP_07843920.1| transcription termination factor NusA [Staphylococcus hominis subsp. hominis C80] gi|313655192|gb|EFS18937.1| transcription termination factor NusA [Staphylococcus hominis subsp. hominis C80] Length = 408 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 154/388 (39%), Positives = 232/388 (59%), Gaps = 4/388 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKADEIVF 364 Query: 368 VDEIIAHL----LVAEGFADVEELACVK 391 ++ + L E A V Sbjct: 365 SEDKDIEIDDINLEETNLTTAELSAEVD 392 >gi|57866748|ref|YP_188415.1| transcription elongation factor NusA [Staphylococcus epidermidis RP62A] gi|57637406|gb|AAW54194.1| N utilization substance protein A, putative [Staphylococcus epidermidis RP62A] Length = 407 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 152/396 (38%), Positives = 236/396 (59%), Gaps = 5/396 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+ G + V+ E E P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++ Sbjct: 239 YSDNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LT W IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + + + D ++ + E ELA + Sbjct: 359 ADEIVNSGDEDVEFDNVNLEETNLTSTELAAETDED 394 >gi|222526490|ref|YP_002570961.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl] gi|222450369|gb|ACM54635.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl] Length = 442 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 144/345 (41%), Positives = 223/345 (64%), Gaps = 5/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G + Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I L+ AR P IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ ER+ Y EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G Sbjct: 122 KDIERNYIYSEFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQ 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ +V++++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+A Sbjct: 182 RLKVYLMEVKKDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 L++ VIVP +QLSLAIG+ GQNVRLA++LTGW IDI + Sbjct: 302 LNDHEHTALVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDIKSAS 346 >gi|189424726|ref|YP_001951903.1| transcription elongation factor NusA [Geobacter lovleyi SZ] gi|189420985|gb|ACD95383.1| NusA antitermination factor [Geobacter lovleyi SZ] Length = 385 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 180/371 (48%), Positives = 245/371 (66%), Gaps = 5/371 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + + EK IDR VV+ M ++ AA Y ++ N +TG++ LF + V Sbjct: 7 LKQAIEQIVKEKGIDRQVVIEAMEQAVLSAANKKYRNTRNLEAHYNNDTGEVELFEYVVV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +ISL AR+ DP ++G + + + DFGR+A Q+AKQVIIQKVREAER+ Sbjct: 67 VEEVQDSYTEISLDEAREMDPECEVGDELGEKIDSGDFGRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+KD+ EI++G V+R E G++++DLG ++ ++ E + RE RPGDR+++ I D Sbjct: 127 TVFNEYKDRQWEIVTGQVRRFERGDLLIDLGRAEAILSGKEQMPREVYRPGDRIRAIITD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + +GPQ++LSRTHPQ + KLF EVPEI G+V++ V RDPGSRAK+AV S D I Sbjct: 187 IAMTTKGPQIILSRTHPQMLAKLFEAEVPEIGEGLVEIVNVVRDPGSRAKIAVASHDRDI 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A FV NAL PA V KV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSADIARFVCNALSPAQVVKVFMDEEQRTL 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 EVIVP +QLSLAIG+RGQNV LA++LTG IDI E + ++F +V Sbjct: 307 EVIVPDDQLSLAIGKRGQNVSLAARLTGCRIDIKGEGKVEEGDLEEFASF-----DGTHV 361 Query: 369 DEIIAHLLVAE 379 +E + V E Sbjct: 362 EEEPEEMAVDE 372 >gi|320144367|gb|EFW36133.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MRSA177] Length = 391 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRVEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDVALEDADTTESTEEVNDVSVE 383 >gi|118579397|ref|YP_900647.1| transcription elongation factor NusA [Pelobacter propionicus DSM 2379] gi|118502107|gb|ABK98589.1| NusA antitermination factor [Pelobacter propionicus DSM 2379] Length = 401 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 180/394 (45%), Positives = 247/394 (62%), Gaps = 5/394 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L + + EK IDR VVL M ++ AA Y D+ N +TG++ LF Sbjct: 4 NISLKHAIEQIVKEKGIDRQVVLEAMEQAVLTAANKKYRNTRDLEARYNSDTGEVELFEF 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VVEEVE+ +ISL AR+ DP +++G + + + F R+A Q+AKQVIIQKVREA Sbjct: 64 VIVVEEVEDSYKEISLDEAREIDPDVEVGDSLGEKIDSSGFTRIAAQTAKQVIIQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + E+ D+ E+I+G V+R E G++++DLG ++ V+ E + RE RPGDR+++ Sbjct: 124 ERETIFNEYSDRQWEVITGMVRRFEKGDLLIDLGRAEAVLPSKEQMPREVYRPGDRIRAI 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I D+R +GPQ++LSRTHP + KLF EVPE+ GIV++ A+ RDPGSRAKLAV S+D Sbjct: 184 ITDIRVTPKGPQIILSRTHPSMLAKLFEAEVPEVAEGIVEINAIVRDPGSRAKLAVSSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA V+KV +DED Sbjct: 244 PDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALSPAQVSKVFVDEDN 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-----EEEDSINRQKDFNERTQ 360 +EV+V +QLSLAIG+RGQNV LA++LTG IDI + E E D + Sbjct: 304 RALEVVVADDQLSLAIGKRGQNVSLAARLTGCRIDIKSEAKAAEAELQAYASYDGTQLED 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 M+ V + + VE + +E Sbjct: 364 EEMEEGEVAADEQDAVETDAVETVETVETAPEAE 397 >gi|15924256|ref|NP_371790.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu50] gi|15926849|ref|NP_374382.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus N315] gi|148267756|ref|YP_001246699.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus JH9] gi|150393815|ref|YP_001316490.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus JH1] gi|156979587|ref|YP_001441846.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu3] gi|253315622|ref|ZP_04838835.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733496|ref|ZP_04867661.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus TCH130] gi|255006053|ref|ZP_05144654.2| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795678|ref|ZP_05644657.1| transcription termination factor NusA [Staphylococcus aureus A9781] gi|258416081|ref|ZP_05682349.1| transcription termination-antitermination factor [Staphylococcus aureus A9763] gi|258421664|ref|ZP_05684588.1| transcription termination factor NusA [Staphylococcus aureus A9719] gi|258444604|ref|ZP_05692933.1| transcription termination-antitermination factor [Staphylococcus aureus A8115] gi|258447563|ref|ZP_05695707.1| transcription termination-antitermination factor [Staphylococcus aureus A6300] gi|258449405|ref|ZP_05697508.1| transcription termination-antitermination factor [Staphylococcus aureus A6224] gi|258454784|ref|ZP_05702748.1| transcription termination-antitermination factor [Staphylococcus aureus A5937] gi|269202883|ref|YP_003282152.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ED98] gi|282892754|ref|ZP_06300989.1| transcription termination factor NusA [Staphylococcus aureus A8117] gi|282927608|ref|ZP_06335224.1| transcription termination factor NusA [Staphylococcus aureus A10102] gi|295406203|ref|ZP_06816010.1| transcription termination factor NusA [Staphylococcus aureus A8819] gi|296274824|ref|ZP_06857331.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MR1] gi|297244431|ref|ZP_06928314.1| transcription termination factor NusA [Staphylococcus aureus A8796] gi|13701066|dbj|BAB42361.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus N315] gi|14247036|dbj|BAB57428.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus Mu50] gi|147740825|gb|ABQ49123.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus JH9] gi|149946267|gb|ABR52203.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus JH1] gi|156721722|dbj|BAF78139.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus Mu3] gi|253728550|gb|EES97279.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus TCH130] gi|257789650|gb|EEV27990.1| transcription termination factor NusA [Staphylococcus aureus A9781] gi|257839229|gb|EEV63705.1| transcription termination-antitermination factor [Staphylococcus aureus A9763] gi|257842350|gb|EEV66775.1| transcription termination factor NusA [Staphylococcus aureus A9719] gi|257850097|gb|EEV74050.1| transcription termination-antitermination factor [Staphylococcus aureus A8115] gi|257853754|gb|EEV76713.1| transcription termination-antitermination factor [Staphylococcus aureus A6300] gi|257857393|gb|EEV80291.1| transcription termination-antitermination factor [Staphylococcus aureus A6224] gi|257863167|gb|EEV85931.1| transcription termination-antitermination factor [Staphylococcus aureus A5937] gi|262075173|gb|ACY11146.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ED98] gi|282590611|gb|EFB95688.1| transcription termination factor NusA [Staphylococcus aureus A10102] gi|282764751|gb|EFC04876.1| transcription termination factor NusA [Staphylococcus aureus A8117] gi|285816948|gb|ADC37435.1| Transcription termination protein NusA [Staphylococcus aureus 04-02981] gi|294968791|gb|EFG44813.1| transcription termination factor NusA [Staphylococcus aureus A8819] gi|297178461|gb|EFH37707.1| transcription termination factor NusA [Staphylococcus aureus A8796] gi|312829660|emb|CBX34502.1| transcription elongation protein nusA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131060|gb|EFT87044.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS03] gi|329727637|gb|EGG64093.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21172] Length = 391 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDIALEDADTTESTEEVNDVSVE 383 >gi|57651836|ref|YP_186142.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus COL] gi|87160356|ref|YP_493856.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194976|ref|YP_499776.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221388|ref|YP_001332210.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509432|ref|YP_001575091.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142500|ref|ZP_03566993.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452565|ref|ZP_05700571.1| transcription termination-antitermination factor [Staphylococcus aureus A5948] gi|262048158|ref|ZP_06021045.1| transcription elongation factor NusA [Staphylococcus aureus D30] gi|262051328|ref|ZP_06023551.1| transcription elongation factor NusA [Staphylococcus aureus 930918-3] gi|282920510|ref|ZP_06328231.1| transcription termination factor NusA [Staphylococcus aureus A9765] gi|284024259|ref|ZP_06378657.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus 132] gi|294848262|ref|ZP_06789009.1| transcription termination factor NusA [Staphylococcus aureus A9754] gi|304381170|ref|ZP_07363823.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286022|gb|AAW38116.1| N utilization substance protein A, putative [Staphylococcus aureus subsp. aureus COL] gi|87126330|gb|ABD20844.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202534|gb|ABD30344.1| transcription termination-antitermination factor, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374188|dbj|BAF67448.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus str. Newman] gi|160368241|gb|ABX29212.1| N utilization substance A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859783|gb|EEV82625.1| transcription termination-antitermination factor [Staphylococcus aureus A5948] gi|259160703|gb|EEW45724.1| transcription elongation factor NusA [Staphylococcus aureus 930918-3] gi|259163724|gb|EEW48279.1| transcription elongation factor NusA [Staphylococcus aureus D30] gi|269940757|emb|CBI49139.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus TW20] gi|282594172|gb|EFB99159.1| transcription termination factor NusA [Staphylococcus aureus A9765] gi|294825062|gb|EFG41484.1| transcription termination factor NusA [Staphylococcus aureus A9754] gi|302751089|gb|ADL65266.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340153|gb|EFM06094.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198508|gb|EFU28837.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS01] gi|320140917|gb|EFW32764.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MRSA131] gi|329313936|gb|AEB88349.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus T0131] gi|329727836|gb|EGG64287.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21189] gi|329733550|gb|EGG69878.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21193] Length = 391 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDVALEDADTTESTEEVNDVSVE 383 >gi|314933445|ref|ZP_07840810.1| transcription termination factor NusA [Staphylococcus caprae C87] gi|313653595|gb|EFS17352.1| transcription termination factor NusA [Staphylococcus caprae C87] Length = 407 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 155/396 (39%), Positives = 237/396 (59%), Gaps = 5/396 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFR 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+ G + V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 YSEKPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEV 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + + D + + E ELA E Sbjct: 359 ADEIVNTGDEDVEFDDVNLEESNLTTAELAAETDEE 394 >gi|156741122|ref|YP_001431251.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941] gi|156232450|gb|ABU57233.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941] Length = 442 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 145/343 (42%), Positives = 221/343 (64%), Gaps = 3/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R G +I V ++P TG + Sbjct: 2 KSDFYAAISQIASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPLTGAARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV++V + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q + Sbjct: 62 YSEKQVVDDVYDERFEIDLESARKIKPDVELGESVVVETTPKDFGRIAAQTAKQVILQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ER+ Y E+ D+ GE+++ TV+R+ GNVI+++G ++ V+ E + + G R+ Sbjct: 122 KEVEREHIYGEYMDREGELVTATVQRMAKGNVILEMGKAEAVLPPKEQVETDRYYHGQRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ ++RRE+RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV Sbjct: 182 KVYLMEIRREERGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + IDPVG+CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLR 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D VIVP +QLSLAIG+ GQNVRLA++LTGW IDI + Sbjct: 302 DDEHAATVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDIKSAS 344 >gi|21282878|ref|NP_645966.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MW2] gi|49486105|ref|YP_043326.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MSSA476] gi|253731885|ref|ZP_04866050.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208088|ref|ZP_06924519.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912169|ref|ZP_07129612.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH70] gi|21204317|dbj|BAB95014.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus MW2] gi|49244548|emb|CAG42977.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus MSSA476] gi|253724295|gb|EES93024.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887331|gb|EFH26233.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886415|gb|EFK81617.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH70] Length = 391 Score = 438 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDVALEDADTTESTEEVNDVSVE 383 >gi|239636256|ref|ZP_04677258.1| transcription termination factor NusA [Staphylococcus warneri L37603] gi|239597611|gb|EEQ80106.1| transcription termination factor NusA [Staphylococcus warneri L37603] Length = 410 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 153/406 (37%), Positives = 241/406 (59%), Gaps = 5/406 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVEEV + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEEVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K ++ V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V Sbjct: 179 IKVFVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 YSDNPEIDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEI 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + + D + + E ELA + + E Sbjct: 359 ADEVVNTGDEDIEFEDVNLEESNLTTAELAAETDETLEDTDEVTTE 404 >gi|210622610|ref|ZP_03293270.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275] gi|210154111|gb|EEA85117.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275] Length = 390 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 145/371 (39%), Positives = 231/371 (62%), Gaps = 4/371 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L + + K ID++V++ + ++ A + +G ++ VE + + GDI ++ Sbjct: 2 NQEFLNALNEIVETKGIDKEVLIDTIEQALLTAYKKNFGQARNVEVEFDRDNGDIKVYST 61 Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + + +I L AR PS +IG V+ + + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RTVVDESDYYDSFLEIELSEARKISPSYEIGDVIRNEVTPSNFGRIAAQTAKQVVVQRLR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF ++ EI+ G + R V VDLG +GV+ R E I E + G R+K Sbjct: 122 EAEREIVYNEFMERESEIVDGEITRATPSVVYVDLGKIEGVMPRSEKIDNETYKEGQRIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V++ +GPQ+++SR++ + +LF +EVPEI GIVQ+K+++R+ GSR K+AV S Sbjct: 182 VYVVEVKKGSKGPQIIVSRSNKGLVGRLFELEVPEIEQGIVQIKSIAREAGSRTKMAVKS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +GSRV+ +V EL DEKIDI+ +S D A ++ +L P+ V KV ++E Sbjct: 242 LDDKIDPIGACVGPKGSRVKNIVDELGDEKIDIIKYSDDFAEYISASLSPSKVVKVEVNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ + Sbjct: 302 EEKSALVVVPDYQLSLAIGKDGQNARLAAKLTGWKIDIKSESQYEEDLANGVYDKKE--E 359 Query: 364 QAINVDEIIAH 374 + ++ A Sbjct: 360 SELEFNDEFAD 370 >gi|258434820|ref|ZP_05688894.1| transcription termination-antitermination factor [Staphylococcus aureus A9299] gi|257849181|gb|EEV73163.1| transcription termination-antitermination factor [Staphylococcus aureus A9299] Length = 391 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPNDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV------ 352 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 353 -VEAEKVTEEDIALEDADTTESTEEVNDVSVE 383 >gi|311110885|ref|ZP_07712282.1| transcription termination factor NusA [Lactobacillus gasseri MV-22] gi|311066039|gb|EFQ46379.1| transcription termination factor NusA [Lactobacillus gasseri MV-22] Length = 406 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 227/399 (56%), Gaps = 8/399 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 2 SKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 122 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+ Sbjct: 242 PDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDD 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 302 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDI 361 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 NV A + E+L + + E D Sbjct: 362 DDSNVSNEEATE------STAEQLEEDSSEDFPNGEDVD 394 >gi|269469301|gb|EEZ80807.1| transcription elongation factor [uncultured SUP05 cluster bacterium] Length = 390 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 172/413 (41%), Positives = 255/413 (61%), Gaps = 23/413 (5%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + +FGR+A Q KQVIIQKVREAER+ ++ +VGE+I TVKRV+ GNV VD+G Sbjct: 1 METEEFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMGG 60 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 DG+I + + I E+ R DR+++YI DV+ RG Q+ LSRT P+ M++LF MEVPEI Sbjct: 61 VDGMISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEIS 120 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G++++ +RDPG R+KLAV S D +DP+G+C+GMRGSRVQAV EL E++DI++W Sbjct: 121 EGVIEIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILWD 180 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FVINA+ PA V+ +V+DED +++ V +QL+LAIGR GQN++LAS+LTGW ++ Sbjct: 181 EDPAQFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKLN 240 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 +++ E + ++ + + + + VD +A +L+ EGF ++E+A + SIE Sbjct: 241 VMSINESEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIEE 300 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460 FD E+Q RA + L + + + SE L + G+D + AL E I T++ Sbjct: 301 FDVSMVEELQERASDA------QLVQALGDAESSEVLMGVEGMDEDLVQALIEAEIATVD 354 Query: 461 DLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 DLA S+D+LL E K++ SMI+ AR GW + Sbjct: 355 DLAELSIDELLDIQE-----------------MDKEKASSMIMTARENEGWFD 390 >gi|282916526|ref|ZP_06324284.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus D139] gi|283770330|ref|ZP_06343222.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus H19] gi|282319013|gb|EFB49365.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus D139] gi|283460477|gb|EFC07567.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus H19] Length = 391 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 152/392 (38%), Positives = 237/392 (60%), Gaps = 9/392 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R Sbjct: 119 LRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V Sbjct: 179 IKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 FSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + Sbjct: 299 DETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKA 358 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 + + +++ EE+ V + Sbjct: 359 TEEDVALEDADTT-------ESTEEVTDVSVE 383 >gi|227890227|ref|ZP_04008032.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC 33200] gi|227849229|gb|EEJ59315.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC 33200] Length = 416 Score = 437 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 137/380 (36%), Positives = 220/380 (57%), Gaps = 2/380 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 12 SKEMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 71 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 72 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 131 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 132 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVL 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 192 VTRVGSDSKGAQITVSRTAPALVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 S IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DE Sbjct: 252 SDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDE 311 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 312 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQET 371 Query: 364 QAINVDEIIAHLLVAEGFAD 383 NV +AE D Sbjct: 372 TNDNVSNEETPESIAEQIED 391 >gi|312143666|ref|YP_003995112.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus'] gi|311904317|gb|ADQ14758.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus'] Length = 402 Score = 437 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 157/387 (40%), Positives = 245/387 (63%), Gaps = 3/387 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +Q D + +K I ++V++ + ++ A + +G+ ++R++I+ + G++ ++ Sbjct: 2 NVEFIQALDDIEKDKGISKEVLIDAIETALVSAYKKDFGSKDNVRIDISTDAGEVKVYSR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEVEN QISLK A D IG +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KEVVEEVENENTQISLKEADKIDGKYKIGDIVEIEVTPGNFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + +FK+K E+I+GT++R N+++D+G ++ ++ E I+ E G R+K Y Sbjct: 122 ERDVIFDQFKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGEKYEIGKRIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V +GP++L+SRTHP + +LF +EVPEI+ G+V++KAV+R+ G R+K+AV S D Sbjct: 182 VVEVSSTSKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKAVAREAGQRSKMAVASKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQAVV +L EKIDIV W FV NAL PA V V +++ Sbjct: 242 KQVDPVGACVGPKGMRVQAVVEQLNREKIDIVKWDESPEVFVANALNPAEVIDVKINKSD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQFFM 363 EV+VP QLSLAIG+ GQN RLA++LTGW +DI E E S + K+ + Q Sbjct: 302 KIAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESEIVKSPAKTKEIEKSAQELE 361 Query: 364 QAINVDEIIAHLLVAEGFADVEELACV 390 ++++ E + + E +E V Sbjct: 362 KSLDEFEESSE-MENEDLESKQEELEV 387 >gi|116629468|ref|YP_814640.1| transcription elongation factor NusA [Lactobacillus gasseri ATCC 33323] gi|116095050|gb|ABJ60202.1| Transcription elongation factor [Lactobacillus gasseri ATCC 33323] Length = 423 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 227/399 (56%), Gaps = 8/399 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 19 SKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 78 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 79 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 138 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 139 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMTHNDQLPGENYNPQDKVRVL 198 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 199 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 258 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+ Sbjct: 259 PDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDD 318 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 319 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDI 378 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 NV A + E+L + + E D Sbjct: 379 DDSNVSNEEATE------STAEQLEEDSSEDFPNGEDVD 411 >gi|238852618|ref|ZP_04643028.1| transcription termination factor NusA [Lactobacillus gasseri 202-4] gi|238834764|gb|EEQ26991.1| transcription termination factor NusA [Lactobacillus gasseri 202-4] Length = 406 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 139/392 (35%), Positives = 227/392 (57%), Gaps = 10/392 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 2 SKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 122 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+ Sbjct: 242 PDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDD 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 302 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDI 361 Query: 364 QAINVD-----EIIAHLLVA---EGFADVEEL 387 NV E A L E F + E++ Sbjct: 362 DDSNVSNEEATESTAEQLEEDSSEDFPNGEDV 393 >gi|289450259|ref|YP_003474585.1| transcription termination factor NusA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184806|gb|ADC91231.1| transcription termination factor NusA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 372 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 147/366 (40%), Positives = 225/366 (61%), Gaps = 2/366 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLF 63 +EL++ + E+ ID +++ + +++ A + + + +IR E++ ETGD+ +F Sbjct: 2 NVELIEAIKLLEKERGIDAEILFQSIEEALVSAYKREFDVKSSDNIRAEVDRETGDMQVF 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVVEEV + + Q+SL+ AR P DIG V+ L P DFGR+A +AK VI QK+ Sbjct: 62 LEKEVVEEVADSSLQVSLEEARKFSPDFDIGDVLEYQLSPQDFGRLAAATAKNVINQKLC 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 AER+R EF ++ E+ +G V+R + +VIVD+G ++ ++ +E + EN +++ Sbjct: 122 NAERERIQNEFSSRINELANGVVQRRDRRDVIVDIGRAEAILPGNEQVRGENYDFNKQMR 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI V + P V +SR+HP + KLF EVPEI +G V++ AVSR+ GSR+K+AV S Sbjct: 182 LYILRVNEKMGRPVVYVSRSHPNLVRKLFEHEVPEIKDGTVEIMAVSREAGSRSKIAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ ++DP+GACVG RG RVQAV+ EL E+IDI+ WSP+ F+ NAL PA V V + Sbjct: 242 NNENVDPLGACVGQRGMRVQAVMDELNGERIDIIQWSPNPEEFIANALSPAKVVSVEVAP 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V+VP QL+LAIG+ GQN LA++LTGW IDI +E + N +++ R Sbjct: 302 ESKMAAVVVPDNQLALAIGKEGQNAHLAARLTGWKIDIKSESQVRQNLEQELIHRFDRAA 361 Query: 364 QAINVD 369 D Sbjct: 362 SEYEAD 367 >gi|42519362|ref|NP_965292.1| transcription elongation factor NusA [Lactobacillus johnsonii NCC 533] gi|41583650|gb|AAS09258.1| N utilization substance protein A-like protein [Lactobacillus johnsonii NCC 533] Length = 406 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 138/381 (36%), Positives = 221/381 (58%), Gaps = 7/381 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 2 SKEMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 122 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 S IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DE Sbjct: 242 SDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 302 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQET 361 Query: 364 QAINVD-----EIIAHLLVAE 379 NV E IA + E Sbjct: 362 TNDNVSNEETPESIAEQIEDE 382 >gi|329667119|gb|AEB93067.1| N utilization substance protein A-like protein [Lactobacillus johnsonii DPC 6026] Length = 406 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 137/380 (36%), Positives = 220/380 (57%), Gaps = 2/380 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 2 SKEMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ Sbjct: 122 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 S IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DE Sbjct: 242 SDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 302 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQET 361 Query: 364 QAINVDEIIAHLLVAEGFAD 383 NV +AE D Sbjct: 362 TNDNVSNEETPESIAEQIED 381 >gi|323340011|ref|ZP_08080277.1| transcription termination factor NusA [Lactobacillus ruminis ATCC 25644] gi|323092517|gb|EFZ35123.1| transcription termination factor NusA [Lactobacillus ruminis ATCC 25644] Length = 401 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 19/368 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL DA+ EK I ++V++ + ++ A + YG +++V + GDI +F + Sbjct: 2 SKELLNALDALETEKGIKKEVIIDALEQALVSAYKKNYGQAQNVKVTFDARRGDIKVFAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV EV + ++SL A + + + +IG + + P DFGR+A Q+AKQVI+Q+VRE Sbjct: 62 KEVVNEVLDSCLEVSLSDALEINRAYEIGDTIDFEVTPRDFGRIAAQTAKQVIMQRVREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ EI++G V+R + V V+LGN + V+ + + + E DR+K Y Sbjct: 122 ERQMIYNQYSRYENEIMTGEVERRDSRYVYVNLGNVEAVLSKRDQVPGEVYNSHDRIKVY 181 Query: 186 IYDV------------------RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 +Y V +R RGPQV +SR+HP + ++F EVPEI++G V++K Sbjct: 182 VYKVVDPNENQNAEQNEEEGKKKRRNRGPQVYVSRSHPDLLKRMFENEVPEIFDGTVEIK 241 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 +++R+ G RAK+AV S IDP+G CVG RG RV+A+V EL EK+DIV WS D + ++ Sbjct: 242 SIAREAGDRAKIAVCSDQEGIDPIGTCVGPRGERVKAIVEELNGEKMDIVEWSEDPSEYI 301 Query: 288 INALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 AL+PA + +V D ED V+VP QLSLAIG+RGQN RLA+ LTG+ IDI +E Sbjct: 302 KAALKPAEILEVRFDREDDHACTVVVPDTQLSLAIGKRGQNARLAAHLTGYKIDIKSESN 361 Query: 347 DSINRQKD 354 ++ Sbjct: 362 MEELDRQS 369 >gi|163848555|ref|YP_001636599.1| transcription termination factor NusA [Chloroflexus aurantiacus J-10-fl] gi|163669844|gb|ABY36210.1| transcription termination factor NusA [Chloroflexus aurantiacus J-10-fl] Length = 442 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 144/345 (41%), Positives = 222/345 (64%), Gaps = 5/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G + Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I L+ AR P IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ ER+ Y EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G Sbjct: 122 KDIERNYIYSEFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQ 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ +V++++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+A Sbjct: 182 RLKVYLMEVKKDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 L++ VIVP +QLSLAIG+ GQNVRLA +LTGW IDI + Sbjct: 302 LNDHEHTALVIVPDKQLSLAIGKEGQNVRLAEKLTGWRIDIKSAS 346 >gi|172057849|ref|YP_001814309.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15] gi|171990370|gb|ACB61292.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15] Length = 375 Score = 436 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 153/350 (43%), Positives = 222/350 (63%), Gaps = 5/350 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLE 67 LL+ + +A EK ID+++++ + ++ A R +G S+ ++VE + +TGDI +F L E Sbjct: 5 LLEAIEQIAKEKEIDKNIIIDALEQALISAYRRNFGKESEAVKVEFDQQTGDIRVFALKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE + Q+SL+ A + DP+ ++G + P DFGRVA Q+AKQ++ QK+REAER Sbjct: 65 VVERLTQPEEQLSLEEAHEIDPTYELGDFHKVEVTPGDFGRVAAQTAKQIVTQKMREAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +R Y F D+ EI++G V+R + N+ V+L + V+ E + E + +K Y+ Sbjct: 125 ERIYNHFADREDEIMTGMVERQDARNLYVNLEGIEAVLTTHEQMPNERFGIREYIKVYVT 184 Query: 188 DVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V +G +L+SRTHP + +LF +EVPEI +G V+VK+V+R+ G R+K+AV S Sbjct: 185 KVDPMVKGSGASILVSRTHPGLLKRLFEIEVPEIASGEVEVKSVAREAGDRSKIAVAS-- 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG +G+RVQ +V EL EKIDIV +S D +V NAL PA V V ++E Sbjct: 243 DEIDPVGACVGQKGARVQRIVNELNGEKIDIVRYSDDPKEYVANALSPAQVVAVYVNEPA 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E KD Sbjct: 303 KATIVVVPDFQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAESMELKDV 352 >gi|163815206|ref|ZP_02206583.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759] gi|158449401|gb|EDP26396.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759] Length = 398 Score = 436 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 137/344 (39%), Positives = 220/344 (63%), Gaps = 1/344 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + E++I +DV+L + S++ A + + T +I V ++ ETG+ ++ E Sbjct: 3 EIIEALNQLEKERNISKDVLLEAIERSLKTACKKDFNTDENITVSLDRETGECHVYAAKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN + QISL A+ + +IG V+ + +FGR+A Q A+ VI+Q + E ER Sbjct: 63 VVDEVENPSFQISLSQAKMLNRRYEIGDTVNVEITTKNFGRIAAQRARNVIVQAINENER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 Y F K ++++G V+R +V V L ++ +++ E I E GDR+K Y+ Sbjct: 123 AAIYDHFHMKEKDVVTGIVERQVGDSVNVSLDDKTEALLKPSEMIEGETYERGDRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GP++++SRTHP+ + +LF EV EI +G+V++K+ R+ GSR+K+AV+S+D Sbjct: 183 TEVKKTNKGPKIVVSRTHPELVKRLFEKEVTEIADGVVEIKSFCREAGSRSKIAVWSNDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++D VGACVG+ G RV AVV +L EKIDI+ WS + A F+ NAL P+ V V +D D Sbjct: 243 NVDAVGACVGVNGDRVNAVVADLNGEKIDIIPWSENPAEFIYNALSPSDVEDVSVDLDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG++GQN RLA++LTG+ IDI + + Sbjct: 303 SAFVVVPDTQLSLAIGKKGQNARLAAKLTGYKIDIKSHSKAEEM 346 >gi|330685665|gb|EGG97306.1| transcription termination factor NusA [Staphylococcus epidermidis VCU121] Length = 410 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 152/406 (37%), Positives = 242/406 (59%), Gaps = 5/406 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S+N ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G Sbjct: 1 MSSN--ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFK 58 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + EVVE+V + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q+ Sbjct: 59 VIARKEVVEKVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQR 118 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+AER+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R Sbjct: 119 LRDAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNER 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K ++ V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V Sbjct: 179 IKVFVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISV 238 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S + ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++ Sbjct: 239 YSENPEIDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIV 298 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNER 358 DE+ V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + E Sbjct: 299 DEENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDARDAGVYPVIESEEI 358 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + + + D + + E ELA + + E Sbjct: 359 ADEVVNSGDEDIEFDDVNLEESNLTTAELAAETDESLEETDEVTTE 404 >gi|88608874|ref|YP_506405.1| N utilization substance protein A [Neorickettsia sennetsu str. Miyayama] gi|88601043|gb|ABD46511.1| N utilization substance protein A [Neorickettsia sennetsu str. Miyayama] Length = 537 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 185/544 (34%), Positives = 305/544 (56%), Gaps = 53/544 (9%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVM--ADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 L++++ ++VA ++ + D + + + + + YG I VEI+ ++G+I + Sbjct: 10 NLQIVESINSVAEKEGLSPDTLFRAIGIELAHEIG-KRQYGDHR-IFVEIDKKSGEILVS 67 Query: 64 RLLEVVEEVE----------------------------NYTCQISLKVARDRDPSIDI-- 93 + L VVE+ + +Y I L AR + PSI+ Sbjct: 68 KRLLVVEDSDKARMLEQMEVTTEESDDLPSSFRAEEKVHYDGVIDLSTARLKYPSIEHKA 127 Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK-----R 148 G ++++ LP G + + K + + + R++QY +K +VGEI++G VK + Sbjct: 128 GDIITEHLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVKKSIDFK 187 Query: 149 VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 ++IVD+ +G++ + E+ RPG+RVK I V PQ+LLSR+ F+ Sbjct: 188 TGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVVKPQILLSRSSGSFV 247 Query: 209 VKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTE 268 +LF +VPEIY+ +V+++ V+RD GSR+K+AVFSSD +IDPVGAC+GM GSR+ AVV E Sbjct: 248 AQLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRINAVVNE 307 Query: 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 L EKIDIV +S D+ATF+ NAL+P K+ ++E+ +IE++VP E +SL IGR GQNV Sbjct: 308 LHGEKIDIVEYSNDTATFLANALKPIRPVKITVNEETKKIELVVPDESVSLVIGRGGQNV 367 Query: 329 RLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 L S L G+ ++++++ E S + ++F T F++A+NV+E+IA LLV EGF+ VEE+A Sbjct: 368 YLLSSLLGYRVEVLSDAEFSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFSTVEEIA 427 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIK 448 S +A IEGFD++ A EI+ RA EY+ ++ + + + ++ D+ + Sbjct: 428 DCNTSRLAFIEGFDKDIAEEIRSRAVEYVNEQPKRVRALAEKYKANPNMLALSSFDTGLL 487 Query: 449 VALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 L +G+ +E +A S D+L + G G P +E +II +R Sbjct: 488 EVLFSSGLTDLEKVAELSCDELREVIGDNG------------FGVPL--LEQLIIRSRKT 533 Query: 509 MGWI 512 +GW+ Sbjct: 534 LGWL 537 >gi|229829176|ref|ZP_04455245.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM 14600] gi|229792339|gb|EEP28453.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM 14600] Length = 406 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 136/349 (38%), Positives = 215/349 (61%), Gaps = 3/349 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISL 62 +LL+ DA+ E+ I ++ +L + S+ A + Y +++R ++ ETGD + Sbjct: 3 NTDLLEALDALETERGISKEHILEAIEKSLVAACKVTYKFSDNATNLRAVVDRETGDFHV 62 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 F VV+EV N ++SL+ A D D S+++G + L DF R+A +AK ++ Q + Sbjct: 63 FVKKTVVDEVTNPQSEMSLEEAHDIDGSLNVGDTAEEELQSHDFSRIAASTAKNIMKQMI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 E ER E+ +I++G V+R N+ V+LG D + E + E+ DR+ Sbjct: 123 LEEERKILLDEYIKIEHDIVTGVVQRFIGRNISVNLGKVDAFLPESEQVKGEHYHQSDRI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ +GIV++KA++R+ GSR K+AV+ Sbjct: 183 RVYVLEVKDAAKGPRIRVSRTHPELVKRLFEEEVTEVKDGIVEIKAIAREAGSRTKMAVW 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D +DP+GACVG+ GSRV A+V EL +EKIDI+ W+ + A + NAL PA V V+ D Sbjct: 243 SNDPDVDPLGACVGVNGSRVNAIVNELHNEKIDIINWNENPAMLIENALSPAKVIAVLAD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 ED +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 303 EDAREAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAQEAE 351 >gi|171913143|ref|ZP_02928613.1| transcription elongation factor NusA [Verrucomicrobium spinosum DSM 4136] Length = 417 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 157/407 (38%), Positives = 246/407 (60%), Gaps = 1/407 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + EK IDR ++ + ++ A++ G ++R+EI+P+ G I F L Sbjct: 4 ELKALFEYYEKEKGIDRSKMVDALQSALLAASKKSIGPARELRIEIDPDKGSIRAFARLL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + VEN Q+S+K AR G V + P DFGR+A Q+AKQ +Q++REAE+ Sbjct: 64 VSDTVENPFEQLSVKHARKLKADAQPGDEVDIEVTPKDFGRIAAQTAKQTWMQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EFKD+ G+++SGT++R + +V+VDLG +G++ E + E+ GDR++ Y+ Sbjct: 124 ANLYDEFKDRTGDVVSGTIRRFDKSDVVVDLGKFEGIMTSRERVPTEDYTSGDRMRFYVK 183 Query: 188 DVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + RGP+++LSR+HP F+ +LF EV EI + V++ +++R+ G R K+AV S+D Sbjct: 184 AVEKSTSRGPEIILSRSHPNFVRRLFEFEVSEIADRTVEIVSIAREAGYRTKVAVHSADD 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RG+RV+ +V EL +EK+DI+ WS D A F AL+P + + +DED Sbjct: 244 KVDPVGACVGLRGARVKNIVRELNNEKVDIIRWSKDVAEFTKEALKPIKILSIKVDEDHK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 R+ + V +E+LS AIGR+GQN RL S+L G+ + I +E + + E + Sbjct: 304 RVLLTVSEEELSKAIGRKGQNARLTSRLIGYDLVIEKDEHAAKVFESHVEEAVHRIAADL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++D IA LV EG +D+ A + +IASI D E A +I + Sbjct: 364 DIDRNIARKLVGEGLSDLSNFADADVDDIASIVDGDTELAQQIVDKV 410 >gi|269837284|ref|YP_003319512.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269786547|gb|ACZ38690.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 443 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 230/366 (62%), Gaps = 4/366 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP----ETGDIS 61 + + +A E++I R+ VLS + +++ + + GT ++ V+I+P G I Sbjct: 2 KSDFYTAIATIAAERNIPREAVLSSVEHALRTVYKKMAGTEEEVEVQIDPTLDPNKGGIR 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +F + VVEEVE+ +IS++ AR P +G V+ P +FGR+A Q+AKQV++Q+ Sbjct: 62 IFVVKRVVEEVEDPNTEISVEEARKTHPDAVVGDVIRFDRTPQNFGRIAAQTAKQVVLQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+ ERD Y E+ D+VGE+++G V+R + VIVDLG ++ V+ E + E R G R Sbjct: 122 IRDYERDSVYAEYIDRVGEVLNGIVQRADPKAVIVDLGKAEAVMPAREQVPNERYRVGQR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V ++ RGPQ+++SRTH + +LF +EVPEIY+G V++ AV+R+PG R+K+AV Sbjct: 182 LKVYLLEVNKDTRGPQLIVSRTHANLIRRLFELEVPEIYSGAVEIMAVAREPGLRSKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + +DPVG+CVG+RG R+Q +V EL EKID++ WSPD+ TF+ NAL PA V L Sbjct: 242 AARQEKVDPVGSCVGVRGVRIQNIVNELYGEKIDVIEWSPDTPTFIANALSPAKPISVQL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E VIVP EQ+SLAIG+ GQN RLA +LTGW IDI E + + Sbjct: 302 NEAEKVARVIVPTEQMSLAIGKDGQNARLAYKLTGWRIDIKGPEALRGSDDDILRQARAA 361 Query: 362 FMQAIN 367 + + Sbjct: 362 LAEVPD 367 >gi|313885291|ref|ZP_07819042.1| transcription termination factor NusA [Eremococcus coleocola ACS-139-V-Col8] gi|312619397|gb|EFR30835.1| transcription termination factor NusA [Eremococcus coleocola ACS-139-V-Col8] Length = 415 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 149/412 (36%), Positives = 237/412 (57%), Gaps = 13/412 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+Q + EK I DV+ + ++ A + Y ++ V N + G I +F++ Sbjct: 2 SKELVQAMQVLEEEKGISADVIKDALESALVLAYKRNYDQSQNVEVVFNADKGTIKVFQV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +I+L A D + ++ + + P DFGR+A Q+AK VI+Q++REA Sbjct: 62 KKVVEEVNDPNEEIALSDALDIHKAYELDDTIKFEITPKDFGRIATQTAKHVILQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ EI++GTV+R + + ++LG + V+ E I E L RVK Y Sbjct: 122 ERNIVYDEYIQYEDEILNGTVERQDNRFIYINLGKIEAVMPVREQIPTEELTMDQRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+++SR H F+ +LF EVPEI+NGIV++ +++R+ G R+K+AV S D Sbjct: 182 VSKVDKTNRGPQIIVSRAHANFLRRLFENEVPEIFNGIVEIMSIAREAGDRSKVAVRSQD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S IDP+G CVG G RV +V EL E IDIV + D A F+ NA+ P+ V VV ++ Sbjct: 242 SQIDPIGTCVGAGGERVNTIVAELNGENIDIVEYDDDPAQFIKNAMSPSQVIDVVFNDPE 301 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 V+VP QLSLAIG++GQN RLA++LTG+ IDI +E + + +++ N+ + Sbjct: 302 NPNHCIVVVPDYQLSLAIGKKGQNARLAARLTGYKIDIKSESDFQVYQEEMANQD----L 357 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG-------FDEETAVE 408 + VD + ++A + VE+ + + ++E ++E A E Sbjct: 358 TSQEVDMMEGQEVLAADASMVEDPVTESLEVVENMEENPDFEDIIEDEEATE 409 >gi|37926540|pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A Structure-Based Role Of The N-Terminal Domain Length = 369 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 141/335 (42%), Positives = 224/335 (66%), Gaps = 1/335 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 30 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 89 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 90 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 149 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 150 KQFEKYSELKGTVTTAEVIRVXGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 209 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 210 VVKTTKGPKILVSRRVPEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 269 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 270 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 329 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 330 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 364 >gi|266625027|ref|ZP_06117962.1| transcription termination factor NusA [Clostridium hathewayi DSM 13479] gi|288863082|gb|EFC95380.1| transcription termination factor NusA [Clostridium hathewayi DSM 13479] Length = 401 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 222/345 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + E +I +D +L + +S+ A ++ +G +++V +N ET D S++ Sbjct: 2 NKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEVE+ QISL A+ DP DIG +V P+ FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y ++ + E+++G V+R NV ++LG D ++ E + E + +R+K Y Sbjct: 122 GRKALYNDWYCQEKEVVTGIVQRYLGKNVSINLGKVDAILNETEMVKGEVFKATERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 182 VLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 242 QNVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEES 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAREM 346 >gi|217967593|ref|YP_002353099.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724] gi|217336692|gb|ACK42485.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 360 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 145/337 (43%), Positives = 220/337 (65%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + + EK +D++VVL + ++ A + YGT RVEIN +I+++ + ++VE+ Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEINIYVVKKIVEK 69 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ P IG + + P +FGR+AVQ AKQVI+Q ++EAER Y Sbjct: 70 VNDNISEISLEEAKSLKPDAKIGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERKILY 129 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++K K GE+++GTV RVE GNV V + + ++ E I E G R+++Y+ +VR+ Sbjct: 130 EKYKAKEGELVNGTVVRVEKGNVYVRFPDIEAILPVKEQIPGEEYWIGRRLRAYLLEVRK 189 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+ Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + ED + VI Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPLSVEIREDEHKAIVI 309 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ + Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346 >gi|222099941|ref|YP_002534509.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359] gi|221572331|gb|ACM23143.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359] Length = 344 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 142/335 (42%), Positives = 227/335 (67%), Gaps = 1/335 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G+ ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGSSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ T QISL+ A+ DP+ +IG ++ L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VENVEDSTTQISLEEAKKLDPTAEIGSIIKKELDVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++PGD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSDWADIRIGKLETRLPKKEWIPGEEIKPGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PEI NGIV++KA++R+PG R K+AV S++ ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEIENGIVEIKAIAREPGVRTKVAVTSNNPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILRELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENRA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|329121255|ref|ZP_08249882.1| transcription termination factor NusA [Dialister micraerophilus DSM 19965] gi|327470189|gb|EGF15652.1| transcription termination factor NusA [Dialister micraerophilus DSM 19965] Length = 373 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 223/353 (63%), Gaps = 5/353 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78 D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN + Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF + Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++ Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-RQKDFNERTQFFMQAINVDE 370 LAIG+ GQN RLA++LT W IDI +E + + + ++ + F +A E Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSESQAAEDGFGQEEGSVLEDFEEAYEKPE 371 >gi|313892549|ref|ZP_07826136.1| transcription termination factor NusA [Dialister microaerophilus UPII 345-E] gi|313118946|gb|EFR42151.1| transcription termination factor NusA [Dialister microaerophilus UPII 345-E] Length = 373 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 223/353 (63%), Gaps = 5/353 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78 D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN + Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF + Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++ Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-RQKDFNERTQFFMQAINVDE 370 LAIG+ GQN RLA++LT W IDI +E + + + ++ + F +A E Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSESQAAEDGFGQEEGSVLEDFDEAYEKPE 371 >gi|332638631|ref|ZP_08417494.1| transcription elongation factor NusA [Weissella cibaria KACC 11862] Length = 379 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 149/375 (39%), Positives = 234/375 (62%), Gaps = 3/375 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ EK I +V++ + ++++KA Y ++ V+ + + G+I ++ + Sbjct: 2 SKELVNALDALEQEKGIKAEVLVEAIEEALKKAYEKNYDESENVEVQFDQKKGNIKVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE++ QI+L+ A + + + +IG + + P DFGR+A Q+AKQ+I+QKVREA Sbjct: 62 KTVVEEIDEPYEQITLEEALELNKAYEIGDEIRFEVTPADFGRLAAQTAKQIIMQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 ER Y +F E+I+G V+R + + + L GN + +++ + + E+ R GD++K Sbjct: 122 ERGVVYDKFIGYENEVITGEVERQDSRFLYIILPGNQEAAMKQGDQMPNESYRMGDKIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+ EQ+GPQV +SRTHP+ + +LF EVPE+++G V++K+++R+ G R+K+AV+S Sbjct: 182 LVSQVQNEQKGPQVFVSRTHPELVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSH 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +S++D VG VG RG+RVQAVVTEL E +DIV W+ D A F+ NAL PA V V+ D Sbjct: 242 NSNLDAVGTMVGQRGARVQAVVTELSGENMDIVEWTEDPAQFIKNALNPAEVVDVIFDPT 301 Query: 305 VGRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 R V+VP QLSLAIG+RGQN RLA++LTG+ IDI E E D + Sbjct: 302 NDRAVTVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESERDAV-VADMANKENESA 360 Query: 364 QAINVDEIIAHLLVA 378 A ++ +A A Sbjct: 361 NAPVIEADVADDFEA 375 >gi|219850522|ref|YP_002464955.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485] gi|219544781|gb|ACL26519.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485] Length = 442 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 142/345 (41%), Positives = 218/345 (63%), Gaps = 5/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A + L G ++ V+++P +G + Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYKRLLGPNPPAVEVTVKLDPVSGMARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I L AR P + IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEIDLNSARQIKPDVQIGETVLVESTPRDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +E ER Y EF+D+ GE+++ TV+R GNVI+++G ++ +I E ++ + G Sbjct: 122 KEIERSYIYSEFEDREGELVTATVQRNNGPRGNVILEIGKAEAIIPPKEQVANDRYYHGQ 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K + +V+++ RGP+++ SR H + +LF MEVPEIYNG V++K+V+R+PG R K+A Sbjct: 182 RLKVLLLEVKKDDRGPRLIASRAHKNLINRLFEMEVPEIYNGSVEIKSVAREPGLRTKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 L + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI + Sbjct: 302 LHDHDHTALVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDIKSAS 346 >gi|302039405|ref|YP_003799727.1| transcription termination factor NusA [Candidatus Nitrospira defluvii] gi|300607469|emb|CBK43802.1| Transcription termination factor NusA [Candidatus Nitrospira defluvii] Length = 379 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 156/359 (43%), Positives = 233/359 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ + D + +K ID+ V+ + ++Q AA+ +G +I+VEI+P+TG+IS+ Sbjct: 2 NRELIAVIDEIGRQKGIDKARVIGAIESALQTAAKKRFGQAENIQVEIDPKTGEISVVSK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+ V N +ISLK AR+ D ++G + + + GR+A Q+AKQVI QKVREA Sbjct: 62 KIIVDTVANPKAEISLKEAREYDEGAEVGDEIGSLIEMDELGRIAAQTAKQVIFQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E + E+ + G++++G + +E N +VDLG ++ ++ E I RE R GDRVK+ Sbjct: 122 EWEAVQKEYSTRQGDLVNGIILGMERRNFLVDLGKTEAILPIQEQIPRETYRRGDRVKAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VRR + QV+LSR+HPQF+ K+F +EVPE+ IV++K++ R+PG R K+AV S D Sbjct: 182 LLEVRRTPKDVQVILSRSHPQFVAKMFELEVPEVGEKIVEIKSIVREPGDRTKIAVSSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG++GSRVQAVV ELR EKIDI+ W+ D F+ AL PA + KV +DE+ Sbjct: 242 KAVDPVGACVGIKGSRVQAVVRELRGEKIDIITWTQDPRVFIAEALNPATIEKVGIDEEK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E + + + + Sbjct: 302 KSALVVVADSQLSLAIGKNGQNVRLAARLTGWKIDIISATEYEKEKAERDRDIKAALAE 360 >gi|189219874|ref|YP_001940515.1| transcription elongation factor [Methylacidiphilum infernorum V4] gi|189186732|gb|ACD83917.1| Transcription elongation factor [Methylacidiphilum infernorum V4] Length = 441 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 161/410 (39%), Positives = 258/410 (62%), Gaps = 2/410 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L I + + EK I+R V + M ++ AA+ G D+RVEI+P+TG I++ Sbjct: 25 NQEVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVRAK 84 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 LEVVE+V+N QISLK AR+ DP+++IG +V + P DFGR+A Q KQ I Q ++ Sbjct: 85 LEVVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALKGI 144 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER EFKD++ I+SGT++R+E ++I+DLG +G++ E + E G+R+K+Y Sbjct: 145 ERKMVLSEFKDRINNIVSGTIRRIERSDIIIDLGRYEGIMPFKERVPTEEYVVGERIKAY 204 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V GP ++LSR+HP F+++L +EV E+ + IV+VKA++R+PG R K+AV+SS+ Sbjct: 205 VLSVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWSSN 264 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG+RG+RV+ +V EL EKID+ WSP+ I AL+PA V KV +D+ Sbjct: 265 PKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQQN 324 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-NRQKDFNERTQFFMQ 364 R++V V +E S+A+G++G+N LAS++ GW IDI+ E + N + + + Sbjct: 325 HRVKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQKITKAAEEMAS 384 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRA 413 ++ +D+ +A +V GF + E +A + ++ S + D + ++ A Sbjct: 385 SLAIDQSVAEQIVRAGFINPEAVAESEEEDLMSALPELDPQLIHRLKEAA 434 >gi|300361902|ref|ZP_07058079.1| transcription termination factor NusA [Lactobacillus gasseri JV-V03] gi|300354521|gb|EFJ70392.1| transcription termination factor NusA [Lactobacillus gasseri JV-V03] Length = 416 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 226/398 (56%), Gaps = 6/398 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 12 SKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 71 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 72 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 131 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 132 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVL 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 192 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-ED 304 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V +D Sbjct: 252 PDIDPVGTLVGPKGARVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDD 311 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T Sbjct: 312 DKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQ--- 368 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 ++D+ + E+L + + E D Sbjct: 369 --DIDDSNESSNEETTESTAEQLEEDSSDDFPNEEDVD 404 >gi|170017453|ref|YP_001728372.1| transcription elongation factor [Leuconostoc citreum KM20] gi|169804310|gb|ACA82928.1| Transcription elongation factor [Leuconostoc citreum KM20] Length = 363 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 221/359 (61%), Gaps = 4/359 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ E+ I+R +V+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 2 SKELVDALDALEAERGIERAIVIEALEDALKAAYKKQYNAEQNVEAVFDTKKGNVAIKQV 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E+ EN +ISL+ A + + + G + + P DFGR+A Q+AKQVI+QK+R Sbjct: 62 KHVVLDEDFENEDTEISLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIMQKIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 EA R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+ Sbjct: 122 EAGREAIYNKFADYQDEIITGEVDRQDSRFLYMTLPGNQEAAMAPNDQMPNEHYRMGDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV+ Sbjct: 182 KVLVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D +DPVGA VG RG RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 242 THDPDLDPVGAMVGQRGGRVQSVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFD 301 Query: 303 -EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 E+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + + Sbjct: 302 SENERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSETEAAKDLGNQTVSSVE 360 >gi|167766535|ref|ZP_02438588.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1] gi|317498935|ref|ZP_07957218.1| transcription termination factor NusA [Lachnospiraceae bacterium 5_1_63FAA] gi|167711658|gb|EDS22237.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1] gi|291558575|emb|CBL37375.1| transcription termination factor NusA [butyrate-producing bacterium SSC/2] gi|316893768|gb|EFV15967.1| transcription termination factor NusA [Lachnospiraceae bacterium 5_1_63FAA] Length = 395 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 156/403 (38%), Positives = 241/403 (59%), Gaps = 12/403 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK ID+DV++ + +S+ A + +G+ ++ V ++ ETGDI ++ + E Sbjct: 3 ELIAALNQLEKEKGIDKDVIMEAIENSLLAACKRDFGSADNVVVNMDRETGDIYVYAIKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ D ++++G V + P DFGR+A A+ VI+QK++E ER Sbjct: 63 VVDEVYDPALEISLGKAKAIDQNLNLGDTVRIEITPKDFGRIAAMHARSVIVQKIKEEER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 Y F K +I++G V+R NV V L +D ++ + E I E +P +R+K YI Sbjct: 123 RVVYDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFKPTERIKLYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ RGP++L+SRTHP + +LF EV EI +G V++K + R+ GSR K+AV+S+D Sbjct: 183 VEVKETNRGPRILVSRTHPDLVKRLFEKEVAEIQDGTVEIKNIVREAGSRTKMAVWSNDK 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ G+RV A+V +L+ EKIDI+ W+ D F+ NAL P+ V V +D + Sbjct: 243 NVDPVGACVGLNGARVNAIVNDLKGEKIDIINWNEDPCVFIENALSPSKVVSVAVDVEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 EV+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + K + Sbjct: 303 SAEVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQAAEEAAK--------VSEEP 354 Query: 367 NVDE-IIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 DE I L E D + + ++E FD E E Sbjct: 355 EADEFEIEEDLFNEEIND--DFVEDAENTEEAVEDFDAEDIEE 395 >gi|291562551|emb|CBL41367.1| transcription termination factor NusA [butyrate-producing bacterium SS3/4] Length = 388 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 146/344 (42%), Positives = 220/344 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + E +I +D +L + +S+ A ++ +G +++V I+P+ D S++ Sbjct: 2 NKELMESMNILEKEYNISKDTLLEAIENSLLTACKNHFGKADNVKVIIDPDGCDYSVYME 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL AR P +G +V P+ DFGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVETVEDPITQISLADARMIAPRHVLGDIVQIPIDSHDFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Q E++ K E+++G V+R NV VDLG D ++ E + E + +R+K Y Sbjct: 122 SRKSQLSEWQCKEKEVVTGIVQRYIGRNVSVDLGKIDAILPEAEQVKGEVFQRTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++ +SRTHP + +LF E+ E+ +G V+++A++R+ GSR K+AV S+D Sbjct: 182 ILEVKDSPKGPRISVSRTHPDLVRRLFEAEIAEVRDGTVEIRAIAREAGSRTKIAVSSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ G+RV A+V ELR EKIDI+ W + A + NAL PA V VV DED Sbjct: 242 PNVDPVGACVGLNGARVNAIVNELRGEKIDIINWDDNPAFLIENALSPAKVISVVADEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +VIVP QLSLAIG+ GQN RLA++LT + IDI +E + Sbjct: 302 KEAQVIVPDYQLSLAIGKEGQNARLAARLTTYKIDIKSETQARE 345 >gi|206890467|ref|YP_002248539.1| transcription termination factor NusA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742405|gb|ACI21462.1| transcription termination factor NusA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 365 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 244/354 (68%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL + + + EK I +D V+ ++ ++ A R YG S I+++I P+T DI++F + Sbjct: 3 KELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFEIK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVEEV++ +IS++ + + IG V PL DFGR+AVQ+AK V+ QK+RE E Sbjct: 63 KVVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIREIE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R + + EFKDKVG I+SGTV R E GN + +G ++ ++ E + ++NL+ GD VK+YI Sbjct: 123 RSQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGKAEAILPDKEVLPQDNLKRGDIVKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++V++ + P + LSRTHP F+V LF +EVPEI +GIV++K ++RDPG R K+A S D Sbjct: 183 FEVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASSKDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 S+DPVGACVGM+G+RVQAVV EL+ E+IDI+ +S D + F+ AL PA V KV ++E+ Sbjct: 243 SVDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINENEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+V +QLSLAIG++GQNVRLAS+LTGW+ID+++E E + + K+ + Sbjct: 303 TAVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFK 356 >gi|325479444|gb|EGC82540.1| transcription termination factor NusA [Anaerococcus prevotii ACS-065-V-Col13] Length = 425 Score = 432 bits (1111), Expect = e-118, Method: Composition-based stats. Identities = 141/356 (39%), Positives = 228/356 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + EK +D+ +L + ++ K+ + Y ++ V I+ E+G I +F L Sbjct: 2 NNDFMLALDELCKEKGLDKATILDALKKALIKSYQKNYDNQENVDVIIDEESGKIEVFAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +IS+K A+ + + D+G VV L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KNVVEEVEDSISEISIKDAKKVNSTYDLGDVVRIELTPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ ++ E+I+G ++R + N+ V+L +GV+ E + EN P +R+K Sbjct: 122 QRDSLYGEYIERSNEMITGLIQRADNYNLYVNLDKIEGVVPLKEQVPTENYAPNERMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR+ + +LF +EVPEI G++++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSSKDPQIILSRSSQDLITRLFELEVPEITEGVIEIYSIAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + V+++E Sbjct: 242 ETIDAVGACIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIDVIVNEKN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 + V+V +QLSLAIG+ GQN RLA++LTGW IDI ++EE Q D +E Sbjct: 302 KQSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSKEEFDTLSQDDIDEILGL 357 >gi|260438329|ref|ZP_05792145.1| transcription termination factor NusA [Butyrivibrio crossotus DSM 2876] gi|292808916|gb|EFF68121.1| transcription termination factor NusA [Butyrivibrio crossotus DSM 2876] Length = 366 Score = 431 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 138/343 (40%), Positives = 220/343 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ D + EK I + V++ + +S+ A ++ +G + +++ +TGD + Sbjct: 2 NTELITALDILEKEKKISKKVLIEAIENSLLAACKNHFGKNENFTAKVDTKTGDFKVTAA 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL A+ P +IG ++ + +FGR+AVQ++K I+QK+RE Sbjct: 62 KEVVETVEDSVTQISLADAQMISPKYNIGDTINVEIKSAEFGRIAVQNSKSAILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K +I++G V R N++++LG +D ++ + + E +P DR+K Y Sbjct: 122 ERQAVYNEYHAKEKDIVTGIVSRYAGNNLVINLGRADAILSEADMVKGEKYKPNDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ E++G ++ +SR HP+F+ +LF EV E+ +G V++++++R+ GSR K+AV+S + Sbjct: 182 VTEVKTEKKGLKIAVSRCHPEFVKRLFEAEVAELRDGTVEIRSIAREAGSRTKMAVWSKN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG+ GSRV AVV+EL EKIDI+ WS + A + NAL PA V V D + Sbjct: 242 PNVDPVGSCVGVNGSRVNAVVSELNGEKIDIINWSKNPANLIENALSPAKVVYVAADAEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +VIVP QLSLAIGR GQN RLA++LTG+ IDI +E + Sbjct: 302 KTAQVIVPDYQLSLAIGREGQNARLAARLTGFKIDIKSESQAR 344 >gi|182417570|ref|ZP_02948895.1| transcription termination factor NusA [Clostridium butyricum 5521] gi|237667179|ref|ZP_04527163.1| transcription termination factor NusA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378583|gb|EDT76111.1| transcription termination factor NusA [Clostridium butyricum 5521] gi|237655527|gb|EEP53083.1| transcription termination factor NusA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 384 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 146/384 (38%), Positives = 237/384 (61%), Gaps = 8/384 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y +++V I+ ETG+I Sbjct: 2 NEEFVGALRELVKEKGICEDLIFTTIQDALVAAYKKNYANVNTNAQNVKVNIDRETGEIR 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +IS++ A+ P ++ +V + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKVVVDEVYDDVTEISIEEAKVVSPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K++ +II+GT+ R + G V V+LG +GVI +E I E + ++ Sbjct: 122 IKEAERNIIYDEYKEQEFDIITGTILRKDKGMVFVNLGKLEGVIGPNEQIPGEEYKFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQ+ +SRTHP + +LF +EVPEI+ G+V+VK++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNGSKGPQIHVSRTHPGLVKRLFELEVPEIFEGVVEVKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ N+L PA V V + Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFIANSLSPAKVLSVEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + ++ + Sbjct: 302 DEENKTAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQKDALDAEE----EKL 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVE 385 + +D L + ++ Sbjct: 358 VNTEVEIDNEDTTDLSDLDISTID 381 >gi|282850815|ref|ZP_06260189.1| transcription termination factor NusA [Lactobacillus gasseri 224-1] gi|282557767|gb|EFB63355.1| transcription termination factor NusA [Lactobacillus gasseri 224-1] Length = 406 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 136/399 (34%), Positives = 225/399 (56%), Gaps = 8/399 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 2 SKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAI 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ Sbjct: 122 EREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 182 VTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 ID VG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+ Sbjct: 242 PDIDSVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDD 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D VIVP QLSLAIG+RGQNVRLA++L G+ IDI E + + + T + Sbjct: 302 DDKNALVIVPDYQLSLAIGKRGQNVRLAARLAGYKIDIKPESQVEFVDSEGDDVETDQDI 361 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 NV A + E+L + + E D Sbjct: 362 DDSNVSNEEATE------STAEQLEEDSSEDFPNGEDVD 394 >gi|299144046|ref|ZP_07037126.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518531|gb|EFI42270.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 379 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 155/392 (39%), Positives = 247/392 (63%), Gaps = 18/392 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + EK I ++V+ + ++ + R +GT +++V+IN ++G+I++F L Sbjct: 2 NEEFIGALNELEKEKGISKEVIFEALESALVSSYRKNFGTSQNVQVDINKDSGEINVFAL 61 Query: 66 LEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 ++V +V E+ QI + A+D D ++G V S+ + P +FGR+A Q+AKQV+IQ+++ Sbjct: 62 KDIVADVDFEDENLQIPISKAKDIDAKFELGDVYSEKIKPANFGRIAAQTAKQVVIQRIK 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AERD + +F D+ EII+G V+RV YGNV DLG ++ ++ E I E R GDR+K Sbjct: 122 DAERDIIFEDFTDRENEIITGQVQRVSYGNVYFDLGKTEAILPVAEQIKGEVYRQGDRLK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V++ +GPQ++LSR+HP + +LF +EVPEI GIV+V ++SR+ GSR K+AVFS Sbjct: 182 LLLLEVKKTTKGPQIILSRSHPNLVKRLFELEVPEISEGIVEVYSISREAGSRTKIAVFS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DP+GACVG +GSRV+A+V EL DEK+DIV++ F+ NAL P+ V KV +E Sbjct: 242 RNEDVDPLGACVGYKGSRVKAIVDELHDEKVDIVIYEKQIDKFIANALSPSKVEKVFANE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 V+VP QLSLAIG+ GQN RLA++LT W IDI + + F Sbjct: 302 KEKSALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSVSQ---------------FE 346 Query: 364 QAINVDEIIAHLLVAE-GFADVEELACVKISE 394 + ++ ++I L + G++ V E++ E Sbjct: 347 EYLDCEKINEEDLKEKYGYSYVSEISEDYYEE 378 >gi|170288839|ref|YP_001739077.1| NusA antitermination factor [Thermotoga sp. RQ2] gi|281412459|ref|YP_003346538.1| NusA antitermination factor [Thermotoga naphthophila RKU-10] gi|170176342|gb|ACB09394.1| NusA antitermination factor [Thermotoga sp. RQ2] gi|281373562|gb|ADA67124.1| NusA antitermination factor [Thermotoga naphthophila RKU-10] Length = 344 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 141/335 (42%), Positives = 224/335 (66%), Gaps = 1/335 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIRVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|309791818|ref|ZP_07686305.1| NusA antitermination factor [Oscillochloris trichoides DG6] gi|308226140|gb|EFO79881.1| NusA antitermination factor [Oscillochloris trichoides DG6] Length = 442 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 149/368 (40%), Positives = 233/368 (63%), Gaps = 8/368 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A + G ++ V+++P+TG + Sbjct: 2 KSDFYTAISQIAAERGIPKEAIIDVMEKALITAYKRTLGNNPPPMEVSVKLDPQTGAARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + ++ L VAR P++ IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEVELAVARKVQPNVQIGETVVIESTPNDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ER+ Y E+ D+ GE+I+ TV+R+ GNVI+++G ++ ++ E + + G R+ Sbjct: 122 KEVEREHIYGEYMDREGELITATVQRLAKGNVILEMGKAEAILPPKEQVESDRYYHGQRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ ++R+E RGP+++ SRTH +V+LF MEVPEI+NG V++K+++R+PG R K+AV Sbjct: 182 KVYLMEIRKEDRGPRLIASRTHKNLIVRLFEMEVPEIFNGTVEIKSIAREPGLRTKVAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + IDPVG+CVGMRG R+Q +V EL EKID+V WSPD + NAL PA V +V L+ Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSPDPKDLIANALSPAQVVEVHLN 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-----EEEDSINRQKDFNE 357 ED VIVP +QLSLAIG+ GQNVRLA++L+GW IDI + EEE + + + E Sbjct: 302 EDDHVALVIVPDKQLSLAIGKEGQNVRLAAKLSGWRIDIKSATALLEEERAAAEVRGYAE 361 Query: 358 RTQFFMQA 365 + Sbjct: 362 AEAMATEV 369 >gi|332653588|ref|ZP_08419333.1| transcription termination factor NusA [Ruminococcaceae bacterium D16] gi|332518734|gb|EGJ48337.1| transcription termination factor NusA [Ruminococcaceae bacterium D16] Length = 392 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 142/348 (40%), Positives = 212/348 (60%), Gaps = 7/348 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLF 63 + E + EK I ++ + ++ A R G ++ V+ NPET + +F Sbjct: 15 DGQEFFAAIAQIEQEKGIKPGYMMEKITQALVSAYRRDHEGVGDNLIVDANPETNTVRMF 74 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V+N +ISL+ A+ P ++G VV + P FGR+A Q+A+QVIIQ +R Sbjct: 75 LKKDVVEVVDNPNTEISLQEAKAALPRAELGDVVRIEVKPKSFGRIAAQTARQVIIQGIR 134 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLR 177 EAE+ Y EF K E+++G V R++ N V L +D + +E + E+ Sbjct: 135 EAEQGMVYDEFSSKEHELLTGVVTRIDPRNGAVTLRISSGSEFTDAYLGANEQVKGESYV 194 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G R+K Y+ +VR+ +GPQV++SRTHP + +LF +EVPEIY+G V++++++R+ GSR Sbjct: 195 EGQRLKVYMVEVRKATKGPQVIISRTHPGLVKRLFELEVPEIYDGTVEIRSIAREAGSRT 254 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A ++ AL PA V Sbjct: 255 KLAVWSADPNVDPIGACVGPRGQRVNTIVEELKGEKMDIIKYSDDPAEYIAAALSPADVV 314 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V D V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 315 SVEPLPDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGWKIDIKPAS 362 >gi|296111951|ref|YP_003622333.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU 11154] gi|295833483|gb|ADG41364.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU 11154] Length = 363 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 219/354 (61%), Gaps = 4/354 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 2 SKELVDALDALEAERGIERTVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQV 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E+ EN +I+L+ A + + + G + + P DFGR+A Q+AKQVI+QK+R Sbjct: 62 KSVVLDEDFENEDTEIALQDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 EA R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+ Sbjct: 122 EAGREAIYNKFADYQDEIITGEVDRQDARFLYLTLPGNQEAAMAPNDQMPNEHYRMGDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV+ Sbjct: 182 KVLVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ +DPVGA VG RG RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D Sbjct: 242 THDTDLDPVGAMVGQRGGRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFD 301 Query: 303 -EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 E+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + D Sbjct: 302 PENERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAASALTNDV 355 >gi|254796878|ref|YP_003081715.1| N utilization substance protein A [Neorickettsia risticii str. Illinois] gi|254590114|gb|ACT69476.1| N utilization substance protein A [Neorickettsia risticii str. Illinois] Length = 537 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 182/544 (33%), Positives = 306/544 (56%), Gaps = 53/544 (9%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVM--ADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 L++++ ++VA ++ ++ D + + + + + YG I VEI+ ++G+I + Sbjct: 10 NLQIVESINSVAEKEGLNPDALFRAIGIELAHEIG-KRQYGDHR-IFVEIDKKSGEIIVS 67 Query: 64 RLLEVVEEVE----------------------------NYTCQISLKVARDRDPSIDI-- 93 + L VVE+ + ++ I L A+ + P+++ Sbjct: 68 KRLLVVEDSDKARMLEQLEVTTEEFPDSPSSFGVQEKIHHDDIIDLSTAKLKYPNVEHKA 127 Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV---- 149 G ++++ LP G + + K + + + R++QY +K +VGEI++G VK+ Sbjct: 128 GDIITERLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVKKSIDFK 187 Query: 150 -EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 ++IVD+ +G++ + E+ RPG+RVK I V PQ+LLSR+ F+ Sbjct: 188 AGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVIKPQILLSRSSGSFV 247 Query: 209 VKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTE 268 +LF +VPEIY+ +V++K V+RD GSR+K+AVFSSD +IDPVGAC+GM GSR+ AVV+E Sbjct: 248 AQLFSQQVPEIYDRVVEIKKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRINAVVSE 307 Query: 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 L EKID+V +S D+ATF+ NAL+P K+ ++E+V +IE++VP E +SL IGR GQNV Sbjct: 308 LHGEKIDVVEYSSDTATFLANALKPIRPVKIAVNEEVKKIELVVPDESVSLVIGRGGQNV 367 Query: 329 RLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 L S L G+ ++++++ E S + ++F T F++A+NV+E+IA LLV EGF+ VEE+A Sbjct: 368 YLLSSLLGYRVEVLSDAEVSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFSTVEEIA 427 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIK 448 S +A IEGFDE+ A EI+ RA EY+ Q + + + + ++ D+ + Sbjct: 428 DCNTSRLAFIEGFDEDVAEEIRSRAVEYVNEQPKRTQALVEKYKANPNMLALSSFDTGLL 487 Query: 449 VALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 L +G+ +E +A S D+L + G +E +II +R Sbjct: 488 EVLFSSGLTDLEKVAELSCDELRE--------------VIGDNGFAVPLLEQLIIRSRET 533 Query: 509 MGWI 512 +GW+ Sbjct: 534 LGWL 537 >gi|281355268|ref|ZP_06241762.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548] gi|281318148|gb|EFB02168.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548] Length = 414 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 159/410 (38%), Positives = 241/410 (58%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL I + + E+ I RD ++ + +I AAR S+++V+I+P TG I + LE Sbjct: 4 ELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWATLE 63 Query: 68 VVEEVENYTC-QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE N TC Q+ + AR+R P + +G V + P +FGR+A Q+A+Q I+Q++R+AE Sbjct: 64 VVEE--NPTCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLRKAE 121 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ EF D++G+IISGTV+R E GN+I+D ++G++ E I E PGD +++ + Sbjct: 122 KENVQEEFADRIGQIISGTVRRFEAGNIIIDFQKAEGIMPSKEKIHDEQYMPGDIIRALL 181 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V GP +++SR+ P+F+ +LF E+ EI++G+V++ ++R+ G R K++V S+D Sbjct: 182 LRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVMSTDP 241 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRG RV+ + EL +E+IDIV + D + NAL PA V V ++E Sbjct: 242 RVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVNEAKH 301 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT----QFF 362 + V V EQ LA G++ QNVRL S+L GW I+I EEE E+ Q Sbjct: 302 ELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIAAQKL 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +AI V E A LLV G+ V+ + + IEG D R Sbjct: 362 AEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGIDTAEMQNALER 411 >gi|255611947|ref|XP_002539363.1| Transcription elongation protein nusA, putative [Ricinus communis] gi|223506838|gb|EEF23020.1| Transcription elongation protein nusA, putative [Ricinus communis] Length = 316 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 203/316 (64%), Positives = 250/316 (79%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 MVKLF MEVP IY+GI+QV++V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV Sbjct: 1 MVKLFTMEVPGIYDGIIQVRSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120 Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 VRLASQLTGW IDI+TE E+S RQK+FNERT FM A++VDE++ +L +EGFA VEEL Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDALDVDEMVGQVLASEGFAAVEEL 180 Query: 388 ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447 A V + EIASI+GFDE+TA EIQ RAREYLE ++ + +K + LGV++EL I GI +++ Sbjct: 181 AYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLEAEMDEKRKALGVTDELRQINGITAQM 240 Query: 448 KVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 VALGE+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E M++ AR Sbjct: 241 MVALGEDGIKTVEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMVVQARL 300 Query: 508 KMGWIEKEKVADEEVQ 523 GWI +E +A E Sbjct: 301 LAGWITEEDLAKEAEA 316 >gi|299139239|ref|ZP_07032415.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8] gi|298598919|gb|EFI55081.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8] Length = 544 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 170/438 (38%), Positives = 254/438 (57%), Gaps = 9/438 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + ++ EK ID ++V+ + D+I A R Y T+ ++R E++ ETG+I + V Sbjct: 5 LYQSIELLSREKGIDPEIVVGAVEDAIALATRKYYKTVENMRGEMDRETGEIRAYVFKTV 64 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE VE+ Q++L+ AR+ P +++GG + GR+A Q AKQVI QKVREA Sbjct: 65 VETPELVEDADNQLALEQARELAPEVEVGGELRFYKDTTPLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ + GEI++ TVKR+E +VI DLG ++ + + E E +RV+ Sbjct: 125 ERDTVFNEYAHRAGEILTATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFSVAERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPALVQSLFQSEVPEIYDGTVSIRAIAREAGERTKIAVVSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSITDLA 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF--- 361 ++EVIV QLSLAIG++GQNVRLA++L W IDI +EEE ++ T Sbjct: 305 EKQLEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMTGGPST 364 Query: 362 -FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Q + E + L+A G VE LA + E+ + G ++T +I R Y Sbjct: 365 PIEQVTELGESVMEKLIAAGITTVESLADMTAEELGEVPGIGDKTVEKIAVAVRHYFGQY 424 Query: 421 DITLQKKIRELGVSEELC 438 + +++ V L Sbjct: 425 E-EGEERPVPAPVEPALL 441 >gi|15644522|ref|NP_229574.1| transcription elongation factor NusA [Thermotoga maritima MSB8] gi|16975175|pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima gi|4982355|gb|AAD36840.1|AE001815_14 N utilization substance protein A [Thermotoga maritima MSB8] Length = 344 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 141/335 (42%), Positives = 224/335 (66%), Gaps = 1/335 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|284108775|ref|ZP_06386440.1| transcription elongation factor NusA [Candidatus Poribacteria sp. WGA-A3] gi|283829849|gb|EFC34140.1| transcription elongation factor NusA [Candidatus Poribacteria sp. WGA-A3] Length = 404 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 156/359 (43%), Positives = 231/359 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + EL+ + + V EK ID+ VL+ + ++ AA+ YG +I+V+I+PETG+IS+ L Sbjct: 2 KHELMAVIEQVGREKGIDKHRVLAAVESALLTAAKKRYGNNENIQVQIDPETGEISIVSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + +++ + QISL AR D ++G + + +FGR+A Q+AKQVI QKVREA Sbjct: 62 KTIADQITDVNAQISLDEARAIDGEAELGDEIGSLIDVEEFGRIAAQAAKQVICQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G+++ G + E N +V++G ++ V+ E I RE R GDRV++ Sbjct: 122 TWEAVEREYSKREGDLVHGIILGQERRNYLVEIGKTEAVLPVHEQIPREVHRRGDRVRAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VRR + QV+LSR HPQF+VKLF +EVPE+ I+++K V R+PG R K+AVFS D Sbjct: 182 LLEVRRTPKDVQVILSRAHPQFVVKLFQLEVPEVTEKILEIKGVVREPGDRTKIAVFSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG++GSRVQA+V EL+ EKIDI+ W+ D F+ AL PA + KV +DE+ Sbjct: 242 KAVDPVGACVGIKGSRVQAIVRELKGEKIDIIPWTTDPRVFIGEALNPASIEKVGIDEEK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E + + E + Sbjct: 302 KAALVVVADSQLSLAIGKNGQNVRLAAKLTGWKIDIISVSEYEKEKLEREREIKAALAE 360 >gi|313680244|ref|YP_004057983.1| nusa antitermination factor [Oceanithermus profundus DSM 14977] gi|313152959|gb|ADR36810.1| NusA antitermination factor [Oceanithermus profundus DSM 14977] Length = 401 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 219/353 (62%), Gaps = 10/353 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPE 56 E ++ VA E+ + D ++ +++ KA G + V + P Sbjct: 2 NREFVEALQHVALERGVSTDELIEAFEEALAKAYLRHKGFKPKEVEEGLGPLVEVHLEPS 61 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG+I + + VVEEVEN I L+ A+ DP + +G + P+ P +F R+AVQ+AKQ Sbjct: 62 TGEIEVLEIRRVVEEVENPDRDIPLEEAKKYDPEVQVGEEMEFPVDPDEFSRIAVQAAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175 ++ Q+++EAER+R Y E+KD+ GEII+G V RV+ GNV VDLG + ++ E I E Sbjct: 122 ILTQRLKEAERNRVYEEYKDREGEIITGQVTRVDNRGNVYVDLGRGEALMPPREQIPGER 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 PG RVK Y+ +VRR +GP +++SR H + + L EVPEI G V++K V+R+PGS Sbjct: 182 YHPGQRVKVYLKEVRRSSKGPSLIVSRAHEELLKYLMRQEVPEIAEGTVEIKVVAREPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV S + ++DP+GAC+G +G R+QAV EL EKID++ WS + F+ NAL PA Sbjct: 242 RSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGREKIDVIPWSSNPREFIRNALSPAT 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V + +D + GR V V K+Q S+AIGR GQNVRLAS+LTG+ ID EE S Sbjct: 302 VGNIEIDTEAGRAVVSVGKDQHSVAIGRGGQNVRLASKLTGFEIDFKEAEEVS 354 >gi|269926028|ref|YP_003322651.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269789688|gb|ACZ41829.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 372 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 159/340 (46%), Positives = 228/340 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R E ++ E+ I RDV++ + ++++ R Y DI V+I+P TG +++R+ Sbjct: 2 RGEFYAAISQLSLERGIPRDVLIKSVEEAVKAVYRKNYDASGDIEVKIDPNTGQATVYRV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L+VVE V++ QISL A+ D IG VV + P FGR+A Q KQV++QK+REA Sbjct: 62 LQVVENVKDPKTQISLADAKKIDKEARIGSVVHQDVTPDTFGRIAAQMTKQVMLQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E + Y EF D+ GE+++G V+RVE G VIV LG ++ ++ + E + EN +PG R+K Sbjct: 122 EHETIYKEFGDREGELVTGVVQRVENGLVIVQLGKAEAIMPKAEQVESENYKPGQRLKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+++SR + +LF +EVPEIYNG V++KA++R PG R+K+AV + Sbjct: 182 LLKVVKTPRGPQLIVSRRDKNLLKRLFEIEVPEIYNGSVEIKAIARIPGVRSKIAVAARQ 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG+RG+RVQ VV EL+ EKIDI+ WS D ATF+ AL PA V +V+LD++ Sbjct: 242 PGIDPVGSCVGVRGTRVQNVVDELQGEKIDIIQWSDDPATFIARALSPAQVNEVILDKET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP++QLSLAIG+ GQN RLA+ LTGW IDI + E Sbjct: 302 KTATVIVPEKQLSLAIGKDGQNARLAANLTGWRIDIRSPE 341 >gi|300173097|ref|YP_003772263.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG 18811] gi|299887476|emb|CBL91444.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG 18811] Length = 363 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 139/353 (39%), Positives = 221/353 (62%), Gaps = 4/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ E+ I+R++V++ + D+++ A + Y ++ + + G++++ ++ Sbjct: 2 SKELVDALDALEAERGIEREIVVAALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQV 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV ++ EN +ISL A + + + G + + P DFGR+A Q+AKQVI+QK+R Sbjct: 62 KNVVLDDDFENEDTEISLTDALVINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 EA R+ Y +F D EII+G V R + + + L GN + + ++ + E R GDR+ Sbjct: 122 EAGREAIYNKFADYQDEIITGEVDRQDARFLYMTLPGNQEAAMAPNDQMPNERYRMGDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV+ Sbjct: 182 KVLVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ + Sbjct: 242 THDTDLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFN 301 Query: 303 -EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 E+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + K Sbjct: 302 PENERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLSKQ 354 >gi|329769654|ref|ZP_08261058.1| transcription termination factor NusA [Gemella sanguinis M325] gi|328838409|gb|EGF88018.1| transcription termination factor NusA [Gemella sanguinis M325] Length = 343 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 144/342 (42%), Positives = 215/342 (62%), Gaps = 2/342 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD Sbjct: 2 SKDLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + + +L+ A +P+ ++G + + P DFGRV Q+AKQ ++Q++REA Sbjct: 62 KDVVEEVYDDRIEFALEDALKINPAYEVGDIYEEEDLPSDFGRVGAQAAKQALLQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ + E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K Y Sbjct: 122 EKEILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGEEYVPQTPIKVY 181 Query: 186 IYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I V RG P VL SR+HP+F+ +LF +EVPEIYNG+V++K+VSR+ G R K+AV+S Sbjct: 182 IAKVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYNGVVEIKSVSREAGDRTKIAVYS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +IDPVGACVG +G RV +V+EL EKIDI+ W D F+ NAL PA V ++ +DE Sbjct: 242 EDKNIDPVGACVGNKGERVNRIVSELNGEKIDIITWDADPVKFITNALAPAKVEEISIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V V +QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 302 EEKIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDIKAAE 343 >gi|153938223|ref|YP_001391719.1| transcription elongation factor NusA [Clostridium botulinum F str. Langeland] gi|152934119|gb|ABS39617.1| N utilization substance protein A [Clostridium botulinum F str. Langeland] gi|295319745|gb|ADG00123.1| N utilization substance protein A [Clostridium botulinum F str. 230613] Length = 439 Score = 428 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 163/434 (37%), Positives = 269/434 (61%), Gaps = 11/434 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT----EEEDSINRQKDFN 356 +DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI + E+E ++N + + Sbjct: 302 VDEENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKD 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 E+ + D+I + +V+E IS E EE +E Sbjct: 362 EKILENKKEDKEDKIDLKEEIDNTVENVKEYIEKDISVSEDKENITEEDVNS--SEDKED 419 Query: 417 LEGIDITLQKKIRE 430 +E ++I +K I E Sbjct: 420 IEEVNIDTEKAIEE 433 >gi|226323231|ref|ZP_03798749.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758] gi|225208421|gb|EEG90775.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758] Length = 393 Score = 428 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 153/344 (44%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I RD ++ + +S+ A ++ +G +I+V ++ ET D +L + Sbjct: 2 NTELLEALTILEEEKDISRDTLMDAIENSLINACKNHFGKADNIKVIMDKETCDYTLIQE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ QISL A+ DPS +IG +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEEVEDKVEQISLADAKMIDPSYEIGDIVQIPVESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV V+LG +D ++ +E + E P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGVVQRYIGKNVSVNLGKADAILTENEQVKGEKFEPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFEAEVTEVRDGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVGAVVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E + Sbjct: 302 RTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQAIE 345 >gi|254445533|ref|ZP_05059009.1| transcription termination factor NusA [Verrucomicrobiae bacterium DG1235] gi|198259841|gb|EDY84149.1| transcription termination factor NusA [Verrucomicrobiae bacterium DG1235] Length = 419 Score = 428 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 155/417 (37%), Positives = 260/417 (62%), Gaps = 1/417 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK I R+ ++S + +I+ AA ++++ I+P G ++ + LL+ Sbjct: 4 EILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWALLD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +ISL+ AR D ++IG V + P GR+A Q+A+Q I+Q++R+ E+ Sbjct: 64 VVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +R Y +FKD+VG+I+SG V+R E G++IVDLG ++ ++ + + E+ PG+R++ + Sbjct: 124 ERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGKAEAMMPSRDQVPGEDYSPGERIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + RGP+++L+R++P+F+++LF +EV EI +G V+++A SR+PG R K+AV SSD Sbjct: 184 KIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTSSDPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+++V EL EKIDI+ + D + AL+PAI V++DE R Sbjct: 244 VDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDERSRR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 I + V ++ L++AIGR+GQN RL S+L GW IDI+ EE ++ + E Q Q Sbjct: 304 ISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETKQAEAAQGLNQIEG 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +D A LV G E V+ ++ + GF E A +I + +++ +I+ Sbjct: 364 IDSATAERLVNNGLISPELFLDVEEDDLVEM-GFSAEEAADIIAKVTTFIQSQNISS 419 >gi|319937395|ref|ZP_08011802.1| transcription termination-antitermination factor [Coprobacillus sp. 29_1] gi|319807761|gb|EFW04354.1| transcription termination-antitermination factor [Coprobacillus sp. 29_1] Length = 481 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 156/436 (35%), Positives = 259/436 (59%), Gaps = 10/436 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64 + +Q + + EK I+++VVL + ++++K+ + YG S IRV+IN G I L+ Sbjct: 3 SKKFIQALELLESEKGIEKEVVLEALKEALEKSYKKNYGGPESIIRVDINENNGKIRLYE 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV++V + ++SL+ A+ +P IG V + + P FGR+A KQ++ QK+RE Sbjct: 63 IKHVVDDVNDEDFELSLEEAQMINPKYQIGDDVVNEIDPEVFGRLAAVQTKQLLKQKIRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE++ Y EF DK +II+G V RVE I+++G + ++ ++ I E + G +K Sbjct: 123 AEKETLYNEFVDKKDDIITGIVDRVEERFAIINIGRTGALLPSNQQIPGETIYEGQHLKV 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV R +G + +SRT P + +LF MEVPEIY+G V++K+VSR+ G R+K+AV+++ Sbjct: 183 YVSDVERNTKGTHIGVSRTEPGLVKRLFEMEVPEIYDGTVEIKSVSREAGDRSKIAVYTT 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++DP+G+CVG +GSRV+ VV EL E IDIV W+ + F+ +AL P+ V V ++E+ Sbjct: 243 NENVDPIGSCVGPKGSRVRNVVNELNGEMIDIVEWNENPVIFISHALSPSEVVNVDINEN 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN--RQKDFNERTQFF 362 VIVP QLSLAIG++GQN RLA +LTGW IDI + E + E + F Sbjct: 303 DHSALVIVPDNQLSLAIGKKGQNARLAVRLTGWKIDIKSVSEAAREGIIYGQDAEFEKTF 362 Query: 363 MQAINVDE-IIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ + DE +I +++ E F ++E++ I+E +E E I + +E + Sbjct: 363 VEEMTKDEPVIEDVMIEESFEELEDIIEEPITENIIVE---EPVVQPIVEEVKADVEVTE 419 Query: 422 ITLQKKIRELGVSEEL 437 + + + V ++ Sbjct: 420 ---PEILLDDEVENDM 432 >gi|218133589|ref|ZP_03462393.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC 43243] gi|217990964|gb|EEC56970.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC 43243] Length = 393 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 142/380 (37%), Positives = 219/380 (57%), Gaps = 3/380 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLF 63 EL+ DA+ EK I +D+++ + +S+ + +G D I V I+ TGD +F Sbjct: 2 NKELIGALDALEKEKGISKDILIEAIENSLITGCKQHFGITKDDGIVVRIDRNTGDFRVF 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE VE+ QISL+ A + IG ++ + DF R+A Q AK +I+Q++R Sbjct: 62 ITKRVVEHVEDPVEQISLEDAVKINSKAQIGNGINVEIKSEDFSRIAAQKAKGIILQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ K +I++G V+R+ + ++LG D V+ E + E P +R+K Sbjct: 122 EEERKSVYSEYAMKEKDIVTGIVQRINGDKISINLGKMDAVLLPKEQVKGEVFVPTERIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V +G V +SR+HP + +LF EV E+ +G V++K ++R+ GSR K+AV+S Sbjct: 182 LYVVSVTDTAKGVIVKVSRSHPDLVKRLFESEVTEVKDGTVEIKGIAREAGSRTKMAVWS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +DPVGACVG+ G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D+ Sbjct: 242 NNPDVDPVGACVGLNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVVSVIADD 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + + Sbjct: 302 EEKTAQVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSESQAREAGEYE-GYNEESYD 360 Query: 364 QAINVDEIIAHLLVAEGFAD 383 E + L E D Sbjct: 361 DDAEYSENMNDALPDEDIQD 380 >gi|301167102|emb|CBW26681.1| transcription pausing; L factor [Bacteriovorax marinus SJ] Length = 467 Score = 427 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 171/429 (39%), Positives = 266/429 (62%), Gaps = 4/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ + + E+ I++D+V+ + + AR YG + N DI +++ Sbjct: 4 ELGRVIETLGKERGIEKDIVVKAVEQAFLVTARKKYGIQGEYETRYNDGDDDIEIYQYKN 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +I+L A++ D ++IG + + +F RV VQ+A+Q+I QKVR+AER Sbjct: 64 VVDEVRDPIVEITLADAKELDEEVEIGDQIGIKIENPNFSRVDVQTARQIIFQKVRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EFK K GE+++G +R E GN++VDLG +D V+ R E I EN +PGDR+++++ Sbjct: 124 EILFAEFKHKEGELVTGIARRYERGNIVVDLGKADAVLSRREVIPGENFKPGDRIQAFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V RGP++ LSRT P F+VKLF +EVPEI +G +++K+ +R+PG RAK+AV S D Sbjct: 184 EVVMTNRGPEIRLSRTSPLFLVKLFELEVPEIQDGTIEIKSAAREPGQRAKIAVTSVDKD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGM+GSRVQ VV EL+ EKIDIV W+ D TF AL P+ +T + +D + Sbjct: 244 IDPVGACVGMKGSRVQNVVNELQGEKIDIVKWADDVDTFARAALAPSEITNIQIDHEDHT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V+V ++QLSLAIGRRGQNVRLA+ L+G+ I+II++ + QK +Q + Sbjct: 304 MDVVVEEDQLSLAIGRRGQNVRLAAMLSGYKINIISKTKLQERIQKSVAN----LVQISS 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 + + +A ++V G + ++A +E+A + D E A I ++ +I LQ Sbjct: 360 ITDTLAQVMVQNGIQAIGDIAAADATELAELLEVDAEQATGIINDTIAAIDAGNIQLQAD 419 Query: 428 IRELGVSEE 436 E VS Sbjct: 420 EEEELVSAS 428 >gi|259501585|ref|ZP_05744487.1| N utilization substance protein A [Lactobacillus iners DSM 13335] gi|259167103|gb|EEW51598.1| N utilization substance protein A [Lactobacillus iners DSM 13335] Length = 374 Score = 427 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 131/343 (38%), Positives = 208/343 (60%), Gaps = 2/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 14 SKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAV 73 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 74 KTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREA 133 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K Sbjct: 134 ERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVL 193 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD Sbjct: 194 VTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSD 253 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E Sbjct: 254 PNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEAN 313 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 314 DDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 356 >gi|300087631|ref|YP_003758153.1| transcription termination factor NusA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527364|gb|ADJ25832.1| transcription termination factor NusA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 500 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 161/456 (35%), Positives = 258/456 (56%), Gaps = 9/456 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I+ E++ TG I ++ Sbjct: 2 KSDFLLAITQLSAEKNLSKEVVLAAVEAALVSAYRKESFTPNQNIQAELDTMTGKIKVWA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VVE+V + +++L AR +PSI +G V P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKKVVEKVTDRRIEVTLDEARKVNPSIQLGEPVLIEDTPHDAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE E+ K G+I+SG ++RVE VI+DLG ++ V+ E + E RPG R+K Sbjct: 122 AENTAIVDEYAGKAGDIVSGVIQRVEPKQVIIDLGRAEAVMPPSEQVYTERYRPGQRLKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ +V +G V++SR+HP + +LF ME+PEIY+G+V++KAV+R+ G+R+K+AV + Sbjct: 182 FLVEVATTIKGATVIVSRSHPGLLRRLFEMEIPEIYSGMVEIKAVAREGGARSKVAVSAR 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S IDPVG CVG+RG R+Q +V+EL EKID++ WS D A + NAL PA V +V+++E Sbjct: 242 QSGIDPVGCCVGLRGIRIQNIVSELNGEKIDVIPWSEDPALLITNALSPAQVVRVIINEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + ++P Q SLAIG+ GQNVRLA +LTGW IDI + + + Sbjct: 302 LKSATAVIPDRQQSLAIGKEGQNVRLAVKLTGWRIDIKSVSDYEAELPAVAPAPAVETEK 361 Query: 365 AINVDEIIAHLL----VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + +A V + D E A VK A E E +E+ A E Sbjct: 362 PEDKTAQVAKEKPAKPVEKQAEDAREKATVKAE--AKPEEKPVEVLLELPPEALEPALAT 419 Query: 421 DITLQKKIRELG--VSEELCSIPGIDSKIKVALGEN 454 + + ++ E G +S ++ P I ++ V E+ Sbjct: 420 APSAEPEVEEGGTKLSLDMAERPDIKNESGVRFAED 455 >gi|302191441|ref|ZP_07267695.1| transcription elongation factor NusA [Lactobacillus iners AB-1] Length = 362 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 131/343 (38%), Positives = 208/343 (60%), Gaps = 2/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 2 SKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K Sbjct: 122 ERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD Sbjct: 182 VTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E Sbjct: 242 PNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEAN 301 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 302 DDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 344 >gi|160947563|ref|ZP_02094730.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270] gi|158446697|gb|EDP23692.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270] Length = 378 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 139/349 (39%), Positives = 224/349 (64%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + + L+ D + EK + ++++ + ++ K+ +G ++++ IN TG + Sbjct: 7 MMKGTTDFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVE 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 LF + VVE VE+ +ISL A+ +G VS L MDFGRVA Q+A+ ++IQK Sbjct: 67 LFAIKTVVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQK 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++AER+ Y +F+DK E+ISG ++R++ N+ ++LG + ++ E I E R G+R Sbjct: 127 IKDAEREVIYNDFQDKERELISGQIQRIDRNNLFINLGKLEAIVTPPEQIKSEVYRVGER 186 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +G QVLLSR+ F++KLF +EVPEI +G V++++++R+PGSR K+AV Sbjct: 187 LKFYVKEVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAV 246 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS + +DPVGACVG + SRV +++ EL+ EKIDI+V+S + ++ N+L P+ V V Sbjct: 247 FSKNDDVDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFT 306 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +E R +IVP QLSLAIG+ GQN RLA++LT W IDI E+ + Sbjct: 307 NESENRARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDIKGLEKYKED 355 >gi|291460012|ref|ZP_06599402.1| transcription termination factor NusA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417353|gb|EFE91072.1| transcription termination factor NusA [Oribacterium sp. oral taxon 078 str. F0262] Length = 444 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 151/345 (43%), Positives = 218/345 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + + EK I + ++ + S+Q A R+ +G+ ++RV ++PE+ D S+ Sbjct: 2 NTELRDALELLEKEKGIPKQALIEAIELSLQTACRNHFGSADNVRVNVDPESCDFSVIAD 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N +I L A+ DP ++G +V P+ FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVETVSNPIAEIGLSEAKLVDPKYELGDIVQVPVDSRSFGRIATQNAKGVIVQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ E++SG V+R ++IV+LG DG + +E + E L P DR+K Y Sbjct: 122 ERRVLYREYYSMAREVVSGVVERDTGRSIIVNLGRVDGYLSENEQVKGEVLNPTDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR +GP+VLLSRTHP+ + KLF E PEI GIV+++A++R+ GSR K+AV S+D Sbjct: 182 VVEVRDSPKGPRVLLSRTHPELVKKLFEEEAPEIREGIVEIRAIAREAGSRTKMAVLSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG+ G+RV AVV ELR EKIDI+ + + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGSCVGLDGTRVNAVVEELRGEKIDIINYDENPAYLIENALSPAKVIAVIADPDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RL+++LTG+ IDI +E + Sbjct: 302 KDAMVIVPDTQLSLAIGKEGQNARLSAKLTGYKIDIKSESQAQEQ 346 >gi|159897005|ref|YP_001543252.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|159890044|gb|ABX03124.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 444 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 150/344 (43%), Positives = 225/344 (65%), Gaps = 4/344 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I R+ V V+ ++ A R G+ D+++E+ P TG I + Sbjct: 2 KSDFYAAISQIAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIRV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I ++ AR+ ++IG V P DFGR+A Q+AKQV++Q++ Sbjct: 62 YAEKQVVDEVMDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ERD Y E+ D+ GEI++ TV+R GNVI+++G ++ ++ + E IS +N R G R+ Sbjct: 122 KEVERDHIYGEYFDREGEIVTATVQRTAKGNVILEVGRAEAILPQKEQISHDNYRHGQRL 181 Query: 183 KSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K Y+ + RR+ RGP+++ SRTH + +LF MEVPEIYNG V++K+++R+PG R+K+AV Sbjct: 182 KVYLMEARRDDPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + IDPVG+CVGMRG R+Q +V EL EKID+V W D F+ NAL PA V +V L Sbjct: 242 HARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEVHL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 DE V+VP +QLSLAIG+ GQNVRLA++L GW IDI + Sbjct: 302 DEGEKTATVVVPDKQLSLAIGKEGQNVRLAAKLVGWRIDIKSAS 345 >gi|313906214|ref|ZP_07839560.1| transcription termination factor NusA [Eubacterium cellulosolvens 6] gi|313468944|gb|EFR64300.1| transcription termination factor NusA [Eubacterium cellulosolvens 6] Length = 415 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 140/345 (40%), Positives = 213/345 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + EK+I ++ +L + S+ +A ++ Y ++ V I+P+T D ++ Sbjct: 2 NSELLDALNILEKEKNISKETLLEAIQQSLLQAYKNQYDRSDNVVVSIDPDTCDFHIYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ +I+ A D + IG V + +FGR+A +AK VI+QK+RE Sbjct: 62 KTVVETVEDPVTEIAQIDAFKYDSTAQIGETVRVEIQSKNFGRIATTNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + E+++K E+++GTV+R NV V+LG D ++ E + E R +RVK Y Sbjct: 122 ERRALFNEYREKEHEVMTGTVQRYVGQNVNVNLGKVDALLTAKEMVKGEKFRLTERVKIY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR +GP++L+SRTHP+ + +LF EV EI GI+++K+++R+ GSR K+AV+S+D Sbjct: 182 VLEVRDTPKGPKILVSRTHPELVKRLFEEEVAEIREGIIEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ GSRV A+V EL EKID++ W + A + +AL PA V V+ D D Sbjct: 242 PDVDAVGACVGVNGSRVNAIVDELDGEKIDVIEWDENEAVLIEHALSPAKVISVLADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA+ LT + IDI +E + Sbjct: 302 KTALVIVPDYQLSLAIGKEGQNARLAAHLTQYKIDIKSESQAKEE 346 >gi|297180246|gb|ADI16466.1| transcription elongation factor [uncultured bacterium HF770_11D24] Length = 467 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 154/408 (37%), Positives = 241/408 (59%), Gaps = 1/408 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK +DR++++S + D++ AA+ G ++R EI+ + GDI F Sbjct: 2 NAEFIASMEYWEREKGLDREILISAVEDAMVSAAKRAVGPARELRCEIDRKDGDIRAFAT 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L VVE V + +ISL A+ P + + + P +FGR+A Q+AKQ ++Q +R A Sbjct: 62 LIVVETVTDKQNEISLDSAQRIKPDAQLEEELEVEVTPKNFGRIASQNAKQALMQAIRRA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y EFKD+VG+I+SG V+ + +V+VDLG + ++ E + E + G+R++ Sbjct: 122 EKALIYTEFKDRVGDIVSGEVRGFDRSDVLVDLGKFEALLPNRERVPTEEYQRGERIRCL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +++LSR F++KLF +EV EI +G +++KA++R+PG R KLAV S D Sbjct: 182 VKAVEGSDSSSEIILSRRDSDFVIKLFQLEVSEINDGTIEIKAIAREPGFRTKLAVHSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RG RV+ +V EL +EKIDI+ W D T+V N+L PA + ++ + +D Sbjct: 242 EKVDPVGACVGLRGQRVKNIVRELNNEKIDIIRWDSDVETYVTNSLAPAQLKRLEIQQDR 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R+ V+V +QLSLAIGRRGQN RL S LTGW IDI E+E + ++ + Sbjct: 302 KRVHVLVDPDQLSLAIGRRGQNARLTSLLTGWQIDIDPEQEVRVGFEEQVADAVDALAAI 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +++ A LV G ++ L V+ S++A I G E A + A Sbjct: 362 PGIEKEQADALVHAGLLTLDALNGVEASDLADIPGL-AEHAESVLAAA 408 >gi|168184627|ref|ZP_02619291.1| N utilization substance protein A [Clostridium botulinum Bf] gi|237795857|ref|YP_002863409.1| transcription elongation factor NusA [Clostridium botulinum Ba4 str. 657] gi|182672266|gb|EDT84227.1| N utilization substance protein A [Clostridium botulinum Bf] gi|229261617|gb|ACQ52650.1| N utilization substance protein A [Clostridium botulinum Ba4 str. 657] Length = 439 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 158/434 (36%), Positives = 265/434 (61%), Gaps = 11/434 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERT 359 +DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + Sbjct: 302 VDEENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKD 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA---SIEGFDEETAVEIQGRAREY 416 + ++ D+ L E V+ + +I+ E EE +E Sbjct: 362 EKILEDKKEDKEDRIDLKEEIDNTVKNVKEYIEEDISVSEDKEDITEEDVNS--SEDKED 419 Query: 417 LEGIDITLQKKIRE 430 +E ++I +K I E Sbjct: 420 IEEVNIDTEKAIEE 433 >gi|309804404|ref|ZP_07698478.1| transcription termination factor NusA [Lactobacillus iners LactinV 11V1-d] gi|309807206|ref|ZP_07701180.1| transcription termination factor NusA [Lactobacillus iners LactinV 03V1-b] gi|309808384|ref|ZP_07702285.1| transcription termination factor NusA [Lactobacillus iners LactinV 01V1-a] gi|309809697|ref|ZP_07703552.1| transcription termination factor NusA [Lactobacillus iners SPIN 2503V10-D] gi|312871846|ref|ZP_07731931.1| transcription termination factor NusA [Lactobacillus iners LEAF 3008A-a] gi|312872033|ref|ZP_07732111.1| transcription termination factor NusA [Lactobacillus iners LEAF 2062A-h1] gi|312873348|ref|ZP_07733401.1| transcription termination factor NusA [Lactobacillus iners LEAF 2052A-d] gi|312875707|ref|ZP_07735704.1| transcription termination factor NusA [Lactobacillus iners LEAF 2053A-b] gi|325912466|ref|ZP_08174859.1| transcription termination factor NusA [Lactobacillus iners UPII 143-D] gi|325912547|ref|ZP_08174934.1| transcription termination factor NusA [Lactobacillus iners UPII 60-B] gi|329919859|ref|ZP_08276797.1| transcription termination factor NusA [Lactobacillus iners SPIN 1401G] gi|308163519|gb|EFO65792.1| transcription termination factor NusA [Lactobacillus iners LactinV 11V1-d] gi|308166427|gb|EFO68632.1| transcription termination factor NusA [Lactobacillus iners LactinV 03V1-b] gi|308168369|gb|EFO70486.1| transcription termination factor NusA [Lactobacillus iners LactinV 01V1-a] gi|308169977|gb|EFO72015.1| transcription termination factor NusA [Lactobacillus iners SPIN 2503V10-D] gi|311088772|gb|EFQ47219.1| transcription termination factor NusA [Lactobacillus iners LEAF 2053A-b] gi|311091138|gb|EFQ49529.1| transcription termination factor NusA [Lactobacillus iners LEAF 2052A-d] gi|311092446|gb|EFQ50812.1| transcription termination factor NusA [Lactobacillus iners LEAF 2062A-h1] gi|311092627|gb|EFQ50986.1| transcription termination factor NusA [Lactobacillus iners LEAF 3008A-a] gi|325475713|gb|EGC78886.1| transcription termination factor NusA [Lactobacillus iners UPII 143-D] gi|325478156|gb|EGC81281.1| transcription termination factor NusA [Lactobacillus iners UPII 60-B] gi|328936949|gb|EGG33379.1| transcription termination factor NusA [Lactobacillus iners SPIN 1401G] Length = 362 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 131/343 (38%), Positives = 208/343 (60%), Gaps = 2/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 2 SKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K Sbjct: 122 ERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD Sbjct: 182 VTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E Sbjct: 242 PNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEAN 301 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 302 DDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 344 >gi|315653432|ref|ZP_07906354.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] gi|315489357|gb|EFU78997.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] Length = 374 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 131/343 (38%), Positives = 207/343 (60%), Gaps = 2/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 14 SKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAV 73 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 74 KTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREA 133 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K Sbjct: 134 ERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVL 193 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD Sbjct: 194 VTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSD 253 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E Sbjct: 254 PDIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEAN 313 Query: 306 --GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 314 DDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 356 >gi|312972559|ref|ZP_07786732.1| transcription elongation protein nusA [Escherichia coli 1827-70] gi|310332501|gb|EFP99714.1| transcription elongation protein nusA [Escherichia coli 1827-70] Length = 335 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 143/352 (40%), Positives = 218/352 (61%), Gaps = 18/352 (5%) Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 +I R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI + Sbjct: 1 MILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEV 60 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 +++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + Sbjct: 61 IEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 120 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T Sbjct: 121 AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 180 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 ++ Q + + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE Sbjct: 181 VDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE 240 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 T ++ RA+ L I ++ + + +++L ++ G+D + L G+ T+EDLA Sbjct: 241 PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLA 300 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +DDL G ++ ++I+ AR + W E Sbjct: 301 EQGIDDLADIE-----------------GLTDEKAGALIMAAR-NICWFGDE 334 >gi|241895994|ref|ZP_04783290.1| transcription elongation factor [Weissella paramesenteroides ATCC 33313] gi|241870725|gb|EER74476.1| transcription elongation factor [Weissella paramesenteroides ATCC 33313] Length = 386 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 147/376 (39%), Positives = 233/376 (61%), Gaps = 3/376 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ EK I +V+++ + ++++KA Y ++ V+ + + G I ++ + Sbjct: 12 SKELVSALDALEEEKGIKAEVLIAALEEALKKAYEKNYDESENVEVQFDKKKGSIKVYAV 71 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E+E QISL+ A + + + ++G + + P DFGR+A Q+AKQ+I+QKVREA Sbjct: 72 KTVVDEIEEPYEQISLEEALELNKAYEVGDEIRFEVTPKDFGRLAAQTAKQIIMQKVREA 131 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 ER Y F EII+G V+R + + + L GN ++ ++ + EN + GD++K Sbjct: 132 ERGVVYDNFVGYEDEIITGEVEREDSRYLYIILPGNQMAAMKPNDQMPSENYQMGDKIKV 191 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+ EQ+GPQV +SRTHP + +LF EVPE+++G V++K+++R+ G R+K+AV+S Sbjct: 192 LVSQVQNEQKGPQVFVSRTHPDLVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSH 251 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++D VG VG RG+RVQ+VVTEL E +DIV W+ D A F+ N+L PA V +V+ D Sbjct: 252 NENLDAVGTMVGQRGARVQSVVTELSGENMDIVEWTEDPAEFIKNSLNPAEVVEVIFDPT 311 Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 V+VP QLSLAIG+RGQN RLA++LTG+ IDI E + N+ T + Sbjct: 312 NDRAATVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESAREEVIAELENQSTDNSV 371 Query: 364 QAINVDEIIAHLLVAE 379 A N++E+ E Sbjct: 372 -AENIEEVELDDNSEE 386 >gi|168180700|ref|ZP_02615364.1| N utilization substance protein A [Clostridium botulinum NCTC 2916] gi|182668525|gb|EDT80504.1| N utilization substance protein A [Clostridium botulinum NCTC 2916] Length = 457 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 157/436 (36%), Positives = 262/436 (60%), Gaps = 20/436 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S+D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ +V QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 VDEENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEAT-------- 353 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 +N+ E ++ D E+ + + +E E EI + + Sbjct: 354 -----LNLSEAKDEKILENKKEDKEDKIDLHAEMDSIVEDTKENIKEEI--SVSHDNQEV 406 Query: 421 DITLQKKIRELGVSEE 436 D L+K + E+ +E+ Sbjct: 407 DSELEKAMEEVFNTED 422 >gi|320159637|ref|YP_004172861.1| transcription elongation protein NusA [Anaerolinea thermophila UNI-1] gi|319993490|dbj|BAJ62261.1| transcription elongation protein NusA [Anaerolinea thermophila UNI-1] Length = 633 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 148/361 (40%), Positives = 224/361 (62%), Gaps = 6/361 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT--MSDIRVEINPETGDISLF 63 + E + + V EK + RDV+L + ++ A R + +++ +TG ++++ Sbjct: 2 KNEFVLAFNEVLEEKQLPRDVILKALESAMVSAYRRAVNASNAQQVEAKVDLDTGKVTIY 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVVE+V ++SL+ AR +P + +G ++ P DFGRVA Q+A+QVI Q++R Sbjct: 62 AEKEVVEQVREPLTEVSLEEARRYNPHVQLGDMIVVESTPRDFGRVAAQTARQVIQQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +AER Q + +VGEI+SG V+ V + + L ++G + R E I E R DRV Sbjct: 122 DAERQMQLNHYAKQVGEIVSGVVQAVNAQGLTIGLEMRAEGTMPRKEMIPGERFRVHDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V+ RGPQ++LSRTH F+ +L EVPEIY+GIV++++++R+PG RAK+AV Sbjct: 182 RALIAEVKDSPRGPQIILSRTHRNFLRRLLETEVPEIYHGIVEIRSIAREPGERAKVAVS 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ IDPVGACVG+RG R+QA+V EL DEKID++ W+ D A ++ AL PA VT V LD Sbjct: 242 ATQPGIDPVGACVGIRGVRIQAIVRELHDEKIDVIEWNADPAVYIAKALSPARVTGVYLD 301 Query: 303 ED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + V+VP++QLSLAIGR GQN RLA++LTGW IDI + E + Sbjct: 302 DKSSVNKTATVVVPEDQLSLAIGRDGQNARLAAKLTGWRIDIKSLPEAAAEALHRLQTDP 361 Query: 360 Q 360 + Sbjct: 362 E 362 >gi|297588445|ref|ZP_06947088.1| transcription termination factor NusA [Finegoldia magna ATCC 53516] gi|297573818|gb|EFH92539.1| transcription termination factor NusA [Finegoldia magna ATCC 53516] Length = 424 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 145/343 (42%), Positives = 218/343 (63%), Gaps = 6/343 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59 + ++ D + K I R+VV + ++ K+ + S + V IN + G Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++L+ + VVE VE+ +ISL+ A+ D+G V + P +FGR+A Q+A+ ++I Sbjct: 62 VNLYAIKTVVENVEDKNTEISLEEAKTIKRKYDLGDKVKIEITPKNFGRIAAQTARNIVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKSEEYTPN 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+ Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +DE VIV ++QLSLAIG+ GQN RLA++LT W IDI Sbjct: 302 FIDEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIK 344 >gi|329767072|ref|ZP_08258600.1| transcription termination factor NusA [Gemella haemolysans M341] gi|328837797|gb|EGF87422.1| transcription termination factor NusA [Gemella haemolysans M341] Length = 343 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 145/342 (42%), Positives = 212/342 (61%), Gaps = 2/342 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD Sbjct: 2 SKDLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + + SL+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REA Sbjct: 62 KDVVEEVYDDRIEFSLEDALQINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K Y Sbjct: 122 EKEILYKEYIEHEGEILSGTVDRIDSRYVYVKLGKIEAILGENERVKGETYIPQTPIKVY 181 Query: 186 IYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I V RG P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ Sbjct: 182 IAKVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYA 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE Sbjct: 242 EDKNIDPVGACVGNKGDRVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEITIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V V +QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 302 EEKIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDIKATE 343 >gi|170754323|ref|YP_001781964.1| transcription elongation factor NusA [Clostridium botulinum B1 str. Okra] gi|169119535|gb|ACA43371.1| N utilization substance protein A [Clostridium botulinum B1 str. Okra] Length = 457 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 154/436 (35%), Positives = 261/436 (59%), Gaps = 5/436 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + +E Sbjct: 302 VDEENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGRLNLSEAKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + ++ + E + E I E S+ +EE ++ E Sbjct: 362 EKILENKKEDKEDKIDSHEEMDSIVEDTKENIKEEISVSESNEEVDSGLEKTMEEAFNTE 421 Query: 421 DITLQKKIRELGVSEE 436 D + + ++ Sbjct: 422 DKENKLEKDINLFEDD 437 >gi|326692688|ref|ZP_08229693.1| transcription elongation factor NusA [Leuconostoc argentinum KCTC 3773] Length = 365 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 221/354 (62%), Gaps = 4/354 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 2 SKELVDALDALEAERGIERAVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQV 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV E+ EN +I L+ A + + + G + + P DFGR+A Q+AKQVI+QK+R Sbjct: 62 KVVVLDEDFENEDTEIPLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 EA R+ Y +F D EII+G V R + + + L GN + + + + E+ R GDR+ Sbjct: 122 EASREAIYNKFADYQDEIITGEVDRQDTRFLYLTLPGNQEAAMAPADQMPNEHYRMGDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV+ Sbjct: 182 KVLVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 242 THDADLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFD 301 Query: 303 -EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 E+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + + Sbjct: 302 PENDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLVAEA 355 >gi|313673261|ref|YP_004051372.1| nusa antitermination factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940017|gb|ADR19209.1| NusA antitermination factor [Calditerrivibrio nitroreducens DSM 19672] Length = 428 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 254/426 (59%), Gaps = 9/426 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L++AD + EK R ++ + + D+I A G + VEI+ E ++ Sbjct: 3 KEILKVADEIVREKGFSRKIISNALRDAIYTALVKKLGKYGEPVVEIDLEKNIFNISVPK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE+V++ +I L A D +G V+ P+ + GR + K + +K+R+AE Sbjct: 63 EVVEDVDSVWHEILLDDALKIDKDAYLGKVIMVPVTIEEIGRQLATTVKTRLFEKLRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 +D Y EF+ KVGEII+G V + + V V +G ++ ++ + E I + GD +++ + Sbjct: 123 KDIVYSEFQGKVGEIITGIVLKSDKEGVTVSIGKTEAILPKKEMIPGDYYTRGDYIRALL 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +++ + PQ++LSRTHPQF+ KLF E+PE+++G+V+VK+V+R+PG RAK+AV+S+ S Sbjct: 183 LEIKLIKGWPQLVLSRTHPQFLKKLFESEIPEVFDGLVEVKSVAREPGDRAKVAVYSTSS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDPVGAC+G++G R+ A+ EL+ EKID++ WSPD FV ++ PA V + ED Sbjct: 243 NIDPVGACIGLKGVRINAISNELKGEKIDVIQWSPDPVKFVCASISPAEVLLTNIFEDES 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---DFNERTQFFM 363 IEV+VP +QLSLAIG+RGQNV+LAS LTGW +DI+ E E R++ + + + F Sbjct: 303 TIEVVVPDDQLSLAIGKRGQNVKLASILTGWKLDILKESEYKELRKQRLIEQEQEMKEFY 362 Query: 364 QAINVD------EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 ++D + + LVA G D+E+LA + I+ I E A+ I A +YL Sbjct: 363 MIYSLDNLTVLTDEMISKLVAAGVTDLEKLADTDVDRISEILNISHEDAINILNAALDYL 422 Query: 418 EGIDIT 423 + Sbjct: 423 ASVLEE 428 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 14/160 (8%) Query: 321 IGRRGQNVRLAS-QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 IG +G + S +L G ID+I D + + + I DE ++V + Sbjct: 251 IGLKGVRINAISNELKGEKIDVIQWSPDPVKFVCASISPAEVLLTNIFEDESTIEVVVPD 310 Query: 380 GFADV------EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433 + + + I ++ E E++ + I +++++E + Sbjct: 311 DQLSLAIGKRGQNVKLASILTGWKLDILKESEYKELRKQ-------RLIEQEQEMKEFYM 363 Query: 434 SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 L ++ + ++ L G+ +E LA VD + Sbjct: 364 IYSLDNLTVLTDEMISKLVAAGVTDLEKLADTDVDRISEI 403 >gi|304439999|ref|ZP_07399892.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371491|gb|EFM25104.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 412 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 146/360 (40%), Positives = 234/360 (65%), Gaps = 1/360 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64 E + + + EK I +D+V + ++ + + +G + +I V+IN E G+I +F+ Sbjct: 2 NEEFILALNQLESEKGIKKDIVFEALEAALISSYKKNFGMSNQNIVVDINKENGNIKIFK 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV+EVE+ +ISL+ A + +G +V + PM FGR+A Q+AKQV+IQK+++ Sbjct: 62 EMTVVDEVEDEDTEISLEDAEEISSKYKVGSIVRIEIDPMKFGRIAAQTAKQVVIQKIKD 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE+D Y +F D+ GE+I+G V+R G V +DLG S+G++ +E I E+ G+R K Sbjct: 122 AEKDIIYDDFIDREGELITGQVQRSSKGYVFIDLGKSEGILPPNEQIKGEDYSHGNRYKM 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V++ +GPQ++LSR+HP + +LF +EVPEI++GIV+V +SR+ GSR K+AVFS Sbjct: 182 IILEVKKTPKGPQIILSRSHPNLIKRLFELEVPEIHDGIVEVFNISREAGSRTKIAVFSK 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +DP+GACVG +G+RV+A++ + +EKIDI++W D F+ NAL P+ V KV +D+ Sbjct: 242 SEDVDPLGACVGFKGARVKAILDSIGEEKIDIIIWDRDIDHFIANALSPSNVEKVFIDDS 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + V+VP QLSLAIG+ GQNVRLA++LT W IDI + + + + + + + Sbjct: 302 NKQALVVVPDYQLSLAIGKEGQNVRLAAKLTNWKIDIKSVSQFEEYLEAENMTEDELYAK 361 >gi|148380376|ref|YP_001254917.1| N utilization substance protein A [Clostridium botulinum A str. ATCC 3502] gi|153933708|ref|YP_001384596.1| transcription elongation factor NusA [Clostridium botulinum A str. ATCC 19397] gi|153936194|ref|YP_001388112.1| transcription elongation factor NusA [Clostridium botulinum A str. Hall] gi|170761276|ref|YP_001787732.1| transcription elongation factor NusA [Clostridium botulinum A3 str. Loch Maree] gi|226949774|ref|YP_002804865.1| N utilization substance protein A [Clostridium botulinum A2 str. Kyoto] gi|148289860|emb|CAL83968.1| putative transcription elongation protein NusA [Clostridium botulinum A str. ATCC 3502] gi|152929752|gb|ABS35252.1| transcription termination factor NusA [Clostridium botulinum A str. ATCC 19397] gi|152932108|gb|ABS37607.1| N utilization substance protein A [Clostridium botulinum A str. Hall] gi|169408265|gb|ACA56676.1| N utilization substance protein A [Clostridium botulinum A3 str. Loch Maree] gi|226843922|gb|ACO86588.1| N utilization substance protein A [Clostridium botulinum A2 str. Kyoto] gi|322806687|emb|CBZ04256.1| transcription termination protein NusA [Clostridium botulinum H04402 065] Length = 457 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 154/436 (35%), Positives = 261/436 (59%), Gaps = 5/436 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S+D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ +V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E Sbjct: 302 VDEENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEATLNLSEAKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + ++ + + E + E I E S+ ++E E++ E Sbjct: 362 EKILENKKEDKEDKIDLHEEMDSIVEDTKENIKEEISVSHDNQEVDSELEKAMEEVFNTE 421 Query: 421 DITLQKKIRELGVSEE 436 D + + ++ Sbjct: 422 DKENKLEKDMNLFEDD 437 >gi|148270198|ref|YP_001244658.1| transcription elongation factor NusA [Thermotoga petrophila RKU-1] gi|147735742|gb|ABQ47082.1| NusA antitermination factor [Thermotoga petrophila RKU-1] Length = 344 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 142/335 (42%), Positives = 223/335 (66%), Gaps = 1/335 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QIS++ A+ DP ++G VV L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISIEEAKKVDPLAEVGSVVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E + GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTGEWADIRIGKLETRLPKKEWIPDEEIEAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVSSNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVIVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|254669623|emb|CBA03666.1| N utilization substance protein A [Neisseria meningitidis alpha153] Length = 358 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 164/379 (43%), Positives = 244/379 (64%), Gaps = 25/379 (6%) Query: 142 ISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRR--EQRGPQ 197 +SGTVKRVE +IV++ G D +I RD+ I REN R GDR+++ V Q Sbjct: 1 MSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQ 60 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+ Sbjct: 61 VILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGV 120 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV ++QL Sbjct: 121 RGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQL 180 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLV 377 +LAIGR GQNVRLAS LTGW ++I+T E + + FM +NVDE A +LV Sbjct: 181 ALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLV 240 Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437 EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++ Sbjct: 241 QEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDM 298 Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 ++ GID+ + +L E GI T +DLA +VD+L+ + G ++ Sbjct: 299 RNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT-----------------GVNEET 341 Query: 498 VESMIIHARYKMGWIEKEK 516 +++I+ AR W ++K Sbjct: 342 AKAVILTAREH--WFTEDK 358 >gi|322436508|ref|YP_004218720.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321164235|gb|ADW69940.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 534 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 170/425 (40%), Positives = 250/425 (58%), Gaps = 8/425 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q +A++ EK I+ VV+S + D+I A R Y T ++R E++ +TG+I + V Sbjct: 5 LYQSIEALSREKGIEPAVVVSAIEDAIALATRKYYKTQENMRAEMDKDTGEIRAYVFKTV 64 Query: 69 VE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE E+ + Q++L+ AR P +++GG + GR+A Q AKQVI QKVREA Sbjct: 65 VETPEEIVDEINQLALEPARALAPEVEVGGELRFYKDTTPLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ + GE+++ TVKR+E +VI DLG ++ + + E E G+RV+ Sbjct: 125 ERDTVFNEYNHRAGEVLNATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFAVGERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPALVQNLFQSEVPEIYDGTVSIRAIAREAGERTKIAVMSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSITDLA 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM- 363 +IEVIV QLSLAIG++GQNVRLA++L W IDI +EEE ++ + Sbjct: 305 EKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMSGGPTT 364 Query: 364 ---QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Q + E I L+A G VE +A + E+ I G E+T +I R Y Sbjct: 365 PIEQVTELGEQILEKLIAAGITTVEAVADMTAEELEQIPGIGEKTIEKISVAVRHYFGQY 424 Query: 421 DITLQ 425 + + Sbjct: 425 EEGEE 429 >gi|325661695|ref|ZP_08150318.1| transcription termination factor NusA [Lachnospiraceae bacterium 4_1_37FAA] gi|331084712|ref|ZP_08333800.1| transcription termination factor NusA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471948|gb|EGC75163.1| transcription termination factor NusA [Lachnospiraceae bacterium 4_1_37FAA] gi|330410806|gb|EGG90228.1| transcription termination factor NusA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 377 Score = 424 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 152/365 (41%), Positives = 232/365 (63%), Gaps = 1/365 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I ++ +L + +S+ A ++ +G +I++ +N ET D S+F Sbjct: 2 NTELLEALTILEEEKDISKETMLDAIENSLMNACKNHFGKADNIKIIMNRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KVVVEEVEDEVMEISLADAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K++SR+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSISREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + M+A Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGDLP-ENYMDMAMEA 360 Query: 366 INVDE 370 VDE Sbjct: 361 AEVDE 365 >gi|134102374|ref|YP_001108035.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|291004241|ref|ZP_06562214.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|133914997|emb|CAM05110.1| putative transcriptional termination/antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length = 352 Score = 424 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 137/346 (39%), Positives = 198/346 (57%), Gaps = 27/346 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + VL + ++ A R G RVE++ +TG + + Sbjct: 5 IAALRAIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +A + D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 58 -------------IAHTLGADGTVAEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF K GEI+ G ++R G VIV +G+S+GVI E + E G R+K Y Sbjct: 103 TFGEFSTKEGEILGGVIQRDAKANSRGMVIVQVGDSEGVIPAAEQVPGERYEHGMRIKCY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 163 VVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ +S D ATFV NAL PA V V V+DE Sbjct: 223 GGVNAKGACIGPMGARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + S Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDADPSSP 328 >gi|295698482|ref|YP_003603137.1| transcription termination factor NusA [Candidatus Riesia pediculicola USDA] gi|291156972|gb|ADD79417.1| transcription termination factor NusA [Candidatus Riesia pediculicola USDA] Length = 390 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 154/371 (41%), Positives = 244/371 (65%), Gaps = 10/371 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + + V+ EKSI R+ + + +I A + D+RV IN +TGD FR Sbjct: 2 NKEILTVVELVSNEKSIPREKIFEALEIAIATATKKKSVQNIDVRVSINQKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ A+ +P +++G + + + F R+A Q+AKQVI QKVREA Sbjct: 62 WLVVKEVVQPTLEITLEAAQFENPRVELGHYLEYRIRSIQFDRIATQTAKQVIFQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ERD +F ++ GE++SG VK+V + I D+G N + ++ +++ + REN R DR+K Sbjct: 122 ERDIVVQQFSERSGEMLSGIVKKVNKDSTIFDIGQNIEAIVSKEDMLPRENFRINDRIKG 181 Query: 185 YIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YD+R++ RG PQ+++SRT + +++LF +EVPEIY GIV++K + RDPG+R+K+AV + Sbjct: 182 VLYDIRQDSRGRPQLIVSRTSKRMLIELFRLEVPEIYEGIVEIKIIVRDPGTRSKMAVIT 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQ++ EL E+ID+++W+ + A F INA+ PA V+ +++DE Sbjct: 242 NDKRIDPVGACVGMRGSRVQSISNELCGERIDVILWNENLARFTINAMAPAEVSSIIVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFN 356 +++ V + L+ AIGR GQNVRLASQL W ++I+TE+E + ++ Sbjct: 302 KKHSVDIAVEERNLAQAIGRNGQNVRLASQLLKEHRKDDRWELNIMTEKEMLLKNNQNKE 361 Query: 357 ERTQFFMQAIN 367 E+ + F++ I Sbjct: 362 EK-KVFLENIE 371 >gi|269127538|ref|YP_003300908.1| NusA antitermination factor [Thermomonospora curvata DSM 43183] gi|268312496|gb|ACY98870.1| NusA antitermination factor [Thermomonospora curvata DSM 43183] Length = 351 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 138/352 (39%), Positives = 204/352 (57%), Gaps = 24/352 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + ++ EK I ++V + D++ A G RVE++ +TG ++++ Sbjct: 1 MAALRSLESEKDISLELVAQAIEDALLIAYHRTEGAAPRARVELDRKTGHVTVW------ 54 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D ++ D P DF R+A +AKQVI+QK+R+AE + Sbjct: 55 --------------AAETDDEGNVLREYDD--TPEDFSRIAATTAKQVILQKLRDAEDEV 98 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G+I+SG +++ + NV+VDLG + ++ E + E+ GDR+++Y+ Sbjct: 99 TFGEYAGREGDIVSGVIQQGKDPRNVLVDLGRIEAILPPSEQVPGESYEHGDRIRAYVVQ 158 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 159 VRKGHRGPSVQLSRTHPNLVRKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRKPGV 218 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G GSRV+ V+ ELR EKIDIV WS D A FV NAL PA V+ V V+DE Sbjct: 219 NAKGACIGPMGSRVRNVMHELRGEKIDIVDWSEDPAEFVGNALSPARVSSVQVIDEAART 278 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E + Q R+ Sbjct: 279 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEVEQSGQVGAVRRS 330 >gi|206901624|ref|YP_002250930.1| transcription termination factor NusA [Dictyoglomus thermophilum H-6-12] gi|206740727|gb|ACI19785.1| transcription termination factor NusA [Dictyoglomus thermophilum H-6-12] Length = 364 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + + EK +D++VVL + ++ A + YGT RVEIN +IS+F + +VVE+ Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFVVKKVVEK 69 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ P +G + + P +FGR+AVQ AKQVI+Q ++EAER Y Sbjct: 70 VNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERRILY 129 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++K K GE+++GTV R+E GNV V + + V+ E I E G R+++Y+ +VR+ Sbjct: 130 EKYKAKEGELVNGTVVRIEKGNVYVRFPDIEAVLPVKEQIPGEEYWIGRRLRAYLLEVRK 189 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+ Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + E+ + VI Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIREEEHKAIVI 309 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ + Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346 >gi|256379832|ref|YP_003103492.1| transcription elongation factor NusA [Actinosynnema mirum DSM 43827] gi|255924135|gb|ACU39646.1| NusA antitermination factor [Actinosynnema mirum DSM 43827] Length = 337 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 139/343 (40%), Positives = 199/343 (58%), Gaps = 27/343 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I D VL + ++ A + G RVEI+ ++G + + Sbjct: 5 IAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A+D P + D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 --------------AQDLGPDGVVTEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF K GEII G V+R N V+V +G+++GV+ E + E + G R+K Y Sbjct: 103 TFGEFSAKEGEIIGGVVQRDARANARGMVVVQVGDTEGVLPPAEQVPGEEYKHGARIKCY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV +S Sbjct: 163 VVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ S D ATFV NAL PA V V VLDE Sbjct: 223 PGVNAKGACIGPMGARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEA 325 >gi|227499286|ref|ZP_03929398.1| transcription termination factor NusA [Anaerococcus tetradius ATCC 35098] gi|227218637|gb|EEI83871.1| transcription termination factor NusA [Anaerococcus tetradius ATCC 35098] Length = 407 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 152/408 (37%), Positives = 251/408 (61%), Gaps = 15/408 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I ++ L Sbjct: 2 NNDFMLALDELCKEKNLDKPTILDALQKALIKSYQKNYDNQENVDVIIDEETGKIEVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V+EV + +ISLK AR +P+ +G + L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KEIVDEVNDNIVEISLKDARVINPTYRLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ ++ E+I+GT++R + NV V+L +G++ E +S E P R+K Sbjct: 122 QRDSLYGEYIERANEMITGTIQREDKYNVYVNLDKIEGIVPAKEQVSTEKYLPNARMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSSKEPQIILSRASQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID +GAC+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + KV+++E Sbjct: 242 ENIDAIGACIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIKVLVNEKN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE---------DSINRQKDFN 356 + V+V +QLSLAIG+ GQN RLA++LTGW IDI + EE D I + + Sbjct: 302 KQSLVVVASDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEFEKLSQVDIDEILGLNELD 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E +Q ++++ DE L V+E + + E + I E + D+E Sbjct: 362 EESQLSEESLSKDEE--DLEVSEDYDNKEPVEEDYIGE----DEIDDE 403 >gi|317495160|ref|ZP_07953530.1| transcription termination factor NusA [Gemella moribillum M424] gi|316914582|gb|EFV36058.1| transcription termination factor NusA [Gemella moribillum M424] Length = 343 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 146/342 (42%), Positives = 215/342 (62%), Gaps = 2/342 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD Sbjct: 2 SKDLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REA Sbjct: 62 KDVVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPDDFGRVGAQAAKQALLQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ + E+ + GEI+SGTV R++ V V LG + ++ +E + EN P +K Y Sbjct: 122 EKEILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGENYVPQIPIKVY 181 Query: 186 IYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I V RG P VL SR+HP+F+ +LF MEVPEIY+G V++K+VSR+ G R KLAVFS Sbjct: 182 IAKVDNPSRGSKPHVLASRSHPEFIRRLFEMEVPEIYSGTVEIKSVSREAGERTKLAVFS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D ++DPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++++DE Sbjct: 242 EDKNVDPVGACVGNKGDRVNRIVDELNGEKIDIITWDADPVKFITNALAPAKVEEIIIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V V ++QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 302 EEKIANVKVKEDQLSLAIGKKGQNVRLAARLTGWKIDIKAAE 343 >gi|117928724|ref|YP_873275.1| transcription elongation factor NusA [Acidothermus cellulolyticus 11B] gi|117649187|gb|ABK53289.1| NusA antitermination factor [Acidothermus cellulolyticus 11B] Length = 348 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 125/341 (36%), Positives = 193/341 (56%), Gaps = 24/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + ++ EK I D+++ + ++ A + G RV ++ +TG++++ Sbjct: 5 MAALRSLEREKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTVLAAET-- 62 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 + + P DF R+A +AKQVI+Q++R+AE + Sbjct: 63 --------------------DAEGNVIREFDHTPQDFNRIAAMTAKQVILQRLRDAEHEL 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G+++ G +++ + NV V+LG +GV+ E + E G+R++ Y+ Sbjct: 103 TFGEYAGREGDVVGGIIQQQHDSRNVYVNLGKVEGVLPVTEQVPGERYVHGERIRCYVLS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 163 VHKGIRGPQITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGL 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+AV+ EL EKIDI+ +S D ATFV NAL PA VT V ++D Sbjct: 223 NAKGACIGPLGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIGR GQN RLA++LTGW IDI + E + Sbjct: 283 ARVIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDTEAA 323 >gi|160932906|ref|ZP_02080295.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753] gi|156867980|gb|EDO61352.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753] Length = 361 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 145/341 (42%), Positives = 214/341 (62%), Gaps = 3/341 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ + + E+ I D +L + +I A +S Y D + +NP+TG ++ Sbjct: 4 EVFEALSLLEKERGIPVDFMLDKIKKAILTACKSSYNGNDDAIINMNPDTGVFEVYLQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL AR+ DP+ +G V L FGR+A Q+A+ +I Q +R+ ER Sbjct: 64 VVEEVEDKGREISLLDAREIDPNTAVGEKVGVQLDTKQFGRIAAQTARNIIRQGIRDGER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF+ + E+++ TV+R++ + + +G ++ V+ + E + E LR GD VK Y Sbjct: 124 GQMMQEFQSRHQELVTATVERIDPRSGAATLKIGKAEAVLPKSEQVGGEELREGDHVKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+ ++GP+ ++SRTHP + +LF EVPEIY+G V++K+VSR+ GSR KLAV+S D Sbjct: 184 VVDVKETEKGPRAMISRTHPDLVKRLFETEVPEIYDGTVEIKSVSREAGSRTKLAVWSKD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++D VGAC+G RG+RV VV EL EKIDI+ +S D A F+ AL PA V V +D D Sbjct: 244 PNVDAVGACIGARGARVGNVVNELGGEKIDIIEYSEDPAKFIAAALSPADVLSVEVDPDG 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +V VP QLSLAIG +GQN RLA++LTGW IDI E Sbjct: 304 MKACQVTVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPES 344 >gi|330466360|ref|YP_004404103.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] gi|328809331|gb|AEB43503.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] Length = 347 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 137/344 (39%), Positives = 200/344 (58%), Gaps = 27/344 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G S RVEI+ ++G ++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQSHARVEIDRKSGAALVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ DP + D P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQEMDPEGGVVREWDD--TPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVTVDLGKLEGVLPQSEQVPGERYTHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRTHPNLVKKLFALEVPEIADGTVEISAIAREAGHRTKIAVRSTT 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 223 PGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 283 NRAARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQA 326 >gi|227486447|ref|ZP_03916763.1| transcription termination factor NusA [Anaerococcus lactolyticus ATCC 51172] gi|227235628|gb|EEI85643.1| transcription termination factor NusA [Anaerococcus lactolyticus ATCC 51172] Length = 407 Score = 422 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 144/403 (35%), Positives = 256/403 (63%), Gaps = 10/403 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + +K+++++V+L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKDFMLALDELCKDKNVEKEVILDALEKALVKSYQKNYDNQENVDVTIDHETGEIGVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV++VE+ QI+LK A+D D S+ +G L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KEVVDKVEDPINQINLKDAKDLDASLAVGDTARIKLVPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +R+ + ++ D+ E+I+G ++RV+ NV V+L +G++ E + E+ P +R+K Sbjct: 122 QRESLFGDYLDRENELITGLIQRVDKYNVYVNLDRIEGIVPLKEQVPTESYIPNERMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR+ + +LF +EVPEI +G++++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSGKDPQIVLSRSSENLVTRLFELEVPEITDGVIEIYSIAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+RV ++V L+ EKIDI+ +S D +F+ NAL PA + +V ++E Sbjct: 242 ETIDAVGACIGYKGARVNSIVDSLQGEKIDIINYSKDIESFISNALSPADIIEVYVNERN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V +QLSLAIG+ GQN RLA++LTGW IDI ++ E Q++ + + Sbjct: 302 KQSLVVVEDDQLSLAIGKEGQNARLAARLTGWKIDIKSKLEFDSLSQEEID-------EI 354 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 ++++E + E D ++L ++E + + DEE + E Sbjct: 355 LSINE---EEVSDEKSTDDKDLEAYDLAEENASDDKDEEISDE 394 >gi|229824767|ref|ZP_04450836.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC 49176] gi|229791096|gb|EEP27210.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC 49176] Length = 360 Score = 422 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 145/342 (42%), Positives = 218/342 (63%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL++ D + I ++++L + +S+ A + +G +I+V IN E G +S+ Sbjct: 15 NSKELIEALDQLEKTNDISKEIILEAVENSLLVACKDEFGKADNIKVTINRENGKVSVLS 74 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE VE+ QISL A++ P+ G VV+ + P +FGR+A Q AKQV++QK+RE Sbjct: 75 EKTVVETVEDPITQISLAEAKETFPNAVEGQVVNIVITPKNFGRIAAQKAKQVVVQKIRE 134 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER + ++ K +I++G V+R GN+ ++LG D ++ E + E DR+K Sbjct: 135 EERKVLFNQYFAKEHDIVTGIVQRYTGGNISINLGKVDALLSESERVKTEKFSSTDRIKL 194 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++ +SRTHP + +LF EV EI +G V++K++SR+ GSR K+AV+S+ Sbjct: 195 YVVEVKDTSKGPRITVSRTHPDLVKRLFESEVTEIKDGTVEIKSISREAGSRTKIAVYSN 254 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +D VGACVG+ SRV+AVV ELR EKIDIVVWS D F++NAL PA V D + Sbjct: 255 NPEVDAVGACVGLNRSRVEAVVDELRGEKIDIVVWSEDPRVFIMNALSPARAISVEADPE 314 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIV QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 315 EKTAKVIVADSQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 356 >gi|241889783|ref|ZP_04777081.1| transcription termination factor NusA [Gemella haemolysans ATCC 10379] gi|241863405|gb|EER67789.1| transcription termination factor NusA [Gemella haemolysans ATCC 10379] Length = 343 Score = 422 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 143/342 (41%), Positives = 212/342 (61%), Gaps = 2/342 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD Sbjct: 2 SKDLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNVAKNVRVDFNRTTGDYKFIIR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REA Sbjct: 62 KDVVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+ + GEI+SGT+ R++ V V LG + ++ +E + E P +K Y Sbjct: 122 EKEILYKEYIEHEGEILSGTIDRIDSRYVYVKLGKIEAILGENERVKGETYVPQTPIKVY 181 Query: 186 IYDVRREQRG--PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I V RG P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ Sbjct: 182 IAKVDNPTRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYA 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE Sbjct: 242 EDKNIDPVGACVGNKGERVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEINIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V V +QLSLAIG++GQNVRLA++LTGW IDI E Sbjct: 302 EEKIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDIKAAE 343 >gi|257066114|ref|YP_003152370.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548] gi|256797994|gb|ACV28649.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548] Length = 433 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 141/370 (38%), Positives = 231/370 (62%), Gaps = 4/370 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I +F L Sbjct: 2 NNDFMLALDELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV++ +ISLK A + + S +G + L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KEVVDEVDDTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ ++ E+I+GT++R + NV V+L +GV+ E + E ++K Sbjct: 122 QRDSLYGEYIERANEMITGTIQRQDKYNVYVNLDKIEGVVPIKEQVPTEEYPANAKMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR+ + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSSKEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID VGAC+G +G RV ++V EL+ EKIDI+ + D F+ NAL PA + +V+++E Sbjct: 242 EGIDAVGACIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNEKS 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V +QLSLAIG+ GQN RLA++LTGW IDI + EE Q++ +E Sbjct: 302 KKSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEYESLSQEEIDEILGLN--- 358 Query: 366 INVDEIIAHL 375 +DE + + Sbjct: 359 -EIDEEASEV 367 >gi|237734616|ref|ZP_04565097.1| transcription termination-antitermination factor [Mollicutes bacterium D7] gi|229382436|gb|EEO32527.1| transcription termination-antitermination factor [Coprobacillus sp. D7] Length = 443 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 151/375 (40%), Positives = 227/375 (60%), Gaps = 2/375 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 + + + + EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF Sbjct: 3 SKKFMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFE 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L VV+++++ ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE Sbjct: 63 LRTVVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++ Y EF DK +II+G V RVE IV++G + + ++ I E L G +K Sbjct: 123 TEKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKV 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV R +G +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S Sbjct: 183 YVSDVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTS 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+ Sbjct: 243 NENIDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP +QLSLAIG+RGQN RLA +LTGW IDI + E D + Sbjct: 303 NHSALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEAVELGLIDLQTVNNT-EE 361 Query: 365 AINVDEIIAHLLVAE 379 + VD E Sbjct: 362 SSPVDASFEEEFAQE 376 >gi|167756908|ref|ZP_02429035.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402] gi|167703083|gb|EDS17662.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402] Length = 448 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 151/375 (40%), Positives = 227/375 (60%), Gaps = 2/375 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 + + + + EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF Sbjct: 3 SKKFMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFE 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L VV+++++ ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE Sbjct: 63 LRTVVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++ Y EF DK +II+G V RVE IV++G + + ++ I E L G +K Sbjct: 123 TEKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKV 182 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV R +G +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S Sbjct: 183 YVSDVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTS 242 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+ Sbjct: 243 NENIDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP +QLSLAIG+RGQN RLA +LTGW IDI + E D + Sbjct: 303 NHSALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEAVELGLIDLQTVNNT-EE 361 Query: 365 AINVDEIIAHLLVAE 379 + VD E Sbjct: 362 SSPVDASFEEEFAQE 376 >gi|288924202|ref|ZP_06418238.1| NusA antitermination factor [Frankia sp. EUN1f] gi|288344449|gb|EFC78942.1| NusA antitermination factor [Frankia sp. EUN1f] Length = 362 Score = 421 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 139/348 (39%), Positives = 200/348 (57%), Gaps = 28/348 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I D ++ + ++ A + G+ D RV I+ +G++++F Sbjct: 7 ALRGIEREKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Y Sbjct: 59 ------------ARESAPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVTY 103 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+ Sbjct: 104 GQYADREHEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYVV 163 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S Sbjct: 164 HVSRGAHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAPG 223 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++P GAC+G GSRV+AV+ EL EKIDIV WS D A FV +AL PA V+KV + D Sbjct: 224 VNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPAAFVGSALSPARVSKVEVTDLANR 283 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E + +R Sbjct: 284 SARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGNPDRADQ 331 >gi|154497680|ref|ZP_02036058.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC 29799] gi|150273178|gb|EDN00323.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC 29799] Length = 400 Score = 421 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 221/362 (61%), Gaps = 7/362 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLF 63 + E + EK I + +L + ++ A + G +I VE + E G++ ++ Sbjct: 15 DGKEFFAAIGMIEQEKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMY 74 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V+N ++SL AR R P I +G VV + DFGR+A Q+A+QVIIQ +R Sbjct: 75 VKKDVVETVDNPYTEVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMR 134 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGN----SDGVIRRDETISRENLR 177 EAER Y EF K E+++G V R++ G+ + +G+ +D + E + E R Sbjct: 135 EAERGMIYDEFSSKEHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFR 194 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+K Y+ +VRR +GPQVL+SRTHP + +LF +EVPEI++G V+VK+++R+ GSR Sbjct: 195 EGDRLKVYVVEVRRSTKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRT 254 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A +V AL PA V Sbjct: 255 KLAVWSADPNVDPIGACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVI 314 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V +D V+VP +QLSLAIG+ GQN RLA++LTG+ IDI + + +E Sbjct: 315 SVTTLDDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGFKIDIKPASNPGGDEADELDE 374 Query: 358 RT 359 Sbjct: 375 VL 376 >gi|289522943|ref|ZP_06439797.1| transcription termination factor NusA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503486|gb|EFD24650.1| transcription termination factor NusA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 375 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 143/352 (40%), Positives = 227/352 (64%), Gaps = 5/352 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + EK + +V++S + ++ A + GT S++ VE++ + G I ++ + E Sbjct: 9 DFMRALKQIETEKGLPLEVIISSIEAALVSAYKKYKGTNSNVEVELDSDNGIIKIYEVKE 68 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+ V N +IS++ A+ G ++ + P DFGR+AVQ+A+QVI Q++++AE Sbjct: 69 VVDTVRNPAFEISVEEAKSMGLDDAKEGEMIKVEVSPRDFGRIAVQTARQVITQRLKDAE 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R Y +F KVGEI++G V R E G +V +G D ++ R+E I E+ RPGDR K Y Sbjct: 129 RQIIYNDFSGKVGEIVTGVVFRDEGGQALVRIGDKIDAMLPREERIPTESYRPGDRKKFY 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ +GP+++LSR+HP + L +EVPEI G++ +K ++R+ G R+K+AV + D Sbjct: 189 VLDVRKTSKGPRIVLSRSHPGLLKSLLELEVPEIKEGVIDIKNIAREAGVRSKVAVTTLD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV--LDE 303 ++DPVGAC+G +G+R++A+ EL E+ID+++WS D ++ NAL PA V K+ LDE Sbjct: 249 PNVDPVGACIGTKGNRIKAISDELAGERIDVIIWSNDPIAYIKNALSPAKVVKIEPRLDE 308 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 D + V V +QLSLAIG+ GQNVRLA++LTGW IDI E D + +D Sbjct: 309 D-KAVNVYVRPDQLSLAIGKGGQNVRLAAKLTGWKIDINVMEPDRLPTLQDL 359 >gi|291287256|ref|YP_003504072.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809] gi|290884416|gb|ADD68116.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809] Length = 460 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 158/424 (37%), Positives = 256/424 (60%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL ++ D + EK I R+++ + +SI A G + + V ++ + G I + Sbjct: 2 SKELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILLP 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV E V++ +I + A + + +G V+ P + GR A AKQ + +K+R+A Sbjct: 62 KEVCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ +F+D++GEI++G V + + N+I+++G ++ V+ + E I + GD V++ Sbjct: 122 EKQVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGKTEAVLPKREMIGGDFFNRGDYVRAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R + PQ++LSRTHP+FM KLF E+PE++ GI+ VKAVSR+PG RAK+AV++++ Sbjct: 182 LLDIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYTTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SSIDPVGAC+G++G R+ A+ ELR EKID++ WSPDS FV NA+ PA V + ED Sbjct: 242 SSIDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ- 364 IE++VP +QLSLAIG++GQNVRLA++LT W +D++ E E + R++ ++ Q + Sbjct: 302 ETIEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLKEF 361 Query: 365 --------AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 +D H L+ G+ D+E+L+ E+A +EE AV + A +Y Sbjct: 362 YEMYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEVAQELECEEEKAVSLINMALDY 421 Query: 417 LEGI 420 L Sbjct: 422 LANK 425 >gi|302865966|ref|YP_003834603.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] gi|302568825|gb|ADL45027.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] Length = 347 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 136/349 (38%), Positives = 202/349 (57%), Gaps = 27/349 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + D P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQELDADGTVTREWDD--TPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTT 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 S ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 223 SGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSR 331 >gi|315502523|ref|YP_004081410.1| nusa antitermination factor [Micromonospora sp. L5] gi|315409142|gb|ADU07259.1| NusA antitermination factor [Micromonospora sp. L5] Length = 347 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 136/349 (38%), Positives = 202/349 (57%), Gaps = 27/349 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + D P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQELDADGTVTREWDD--TPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTT 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 S ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 223 SGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSR 331 >gi|331007796|ref|ZP_08330909.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330418395|gb|EGG92948.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 336 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 159/334 (47%), Positives = 237/334 (70%), Gaps = 3/334 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK +D +V+ + ++ A + Y S I V I+ TGD FR Sbjct: 3 KEILLVAEAVSNEKGVDAEVIFEALELALATATKKRYDEDSTIDVSIDRRTGDYETFRSW 62 Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 EVV++ Q + + A +++ + G + + + +DFGR+A Q+AKQVI+QKVRE Sbjct: 63 EVVDDETLALLGTQFTTEEAIEQNADLVPGDIHREQVENVDFGRIAAQTAKQVIVQKVRE 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVK 183 AER++ E++DK+GE+ISG+VK+V N+IVDLGN ++G++ R+E + RE R GDR++ Sbjct: 123 AEREQVVEEYRDKIGELISGSVKKVTRDNIIVDLGNNAEGLLPREELVGREIYRMGDRIR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + +VR E RGPQ+ LSR P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV + Sbjct: 183 AMLMEVRSEMRGPQLYLSRACPEMLVELFRIEVPEIAEEIIELKAAARDPGSRAKIAVKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV EL +E+IDI++W ++A FVINA+ PA + +V+DE Sbjct: 243 NDGRIDPVGACVGMRGARVQAVSNELANERIDIILWDDNAAQFVINAMAPAEIESIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + ++V V ++ L++AIGR GQNVRLAS+LTGW Sbjct: 303 ETASMDVAVAEDNLAMAIGRGGQNVRLASELTGW 336 >gi|328950381|ref|YP_004367716.1| NusA antitermination factor [Marinithermus hydrothermalis DSM 14884] gi|328450705|gb|AEB11606.1| NusA antitermination factor [Marinithermus hydrothermalis DSM 14884] Length = 397 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 144/350 (41%), Positives = 219/350 (62%), Gaps = 10/350 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTMSDIRVEINPE 56 E ++ VA E+ + + ++ +++ KA G + V ++P+ Sbjct: 2 NKEFVEALQHVALERGVSPEELIQAFEEALAKAYVRQKGFRPKEVEEGKGPLVEVHLDPQ 61 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 G I + + VVE+VEN +I+L A DP + +G + P+ P +F R+AVQ+AKQ Sbjct: 62 QGTIEVLEIKRVVEKVENPEREIALADALTYDPEVQVGEEMEFPVDPEEFSRIAVQTAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175 ++ Q+++EAER+R Y E+KDK GEI++G V RV+ GNV VDLG + ++ E I E Sbjct: 122 ILTQRLKEAERNRVYEEYKDKKGEILTGQVTRVDNRGNVYVDLGRGEALMPPREQIPTER 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 PG R+K Y+ +V+R +GP +++SR H + + L EVPEI G+V+VKA++R+PGS Sbjct: 182 YYPGQRIKVYLKEVQRSSKGPSLIVSRAHEELLRYLLKQEVPEIAEGVVEVKAIAREPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WSP+ F+ NAL PA Sbjct: 242 RSKVAVMSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSPNPREFIRNALSPAT 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + +D + G V V K+Q SLAIG+ GQNVRLAS+LTG+ ID E Sbjct: 302 VGAIEIDPETGHAAVTVAKDQHSLAIGKAGQNVRLASKLTGYEIDFKEAE 351 >gi|187778986|ref|ZP_02995459.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC 15579] gi|187772611|gb|EDU36413.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC 15579] Length = 454 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 159/439 (36%), Positives = 267/439 (60%), Gaps = 20/439 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E+G+I Sbjct: 2 NQEFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRESGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VVE VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVELVEEEIEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNG+V++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGVVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELISNALSPAKVIDVTI 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 VDEENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKE---------- 351 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + +N+ E +++ D EE + + +E E EI E + + Sbjct: 352 ---EILNLSETKDEVILENKEDDKEEKIDLYEEMDSMVEDTKENIKEEI--SVSENNQEV 406 Query: 421 DITLQKKIRELGVSEELCS 439 D L+K + E+ +E+ Sbjct: 407 DSELEKAMEEVFNTEDKLE 425 >gi|332298598|ref|YP_004440520.1| NusA antitermination factor [Treponema brennaborense DSM 12168] gi|332181701|gb|AEE17389.1| NusA antitermination factor [Treponema brennaborense DSM 12168] Length = 483 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 157/475 (33%), Positives = 247/475 (52%), Gaps = 31/475 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + +K I D +L + ++++ A + +GT + V+ + + D++++ +V+ Sbjct: 7 DAIRQLTQDKGISEDAILQTIENTLKAAYKRKFGTSDNAVVKFSDDLSDVAIYSRKVIVD 66 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 V + +I L A + P ++G + + P +F R AVQ+ KQ Q + E ++D Sbjct: 67 GVYDPVTEIELDEALELSPECEVGDEIDILVDPKEFDRSAVQTGKQTAHQSLSEIQKDSL 126 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 + E+KDKVGEII G +R G++ VDLG +GV+ RE DR+K+ I DV+ Sbjct: 127 FAEYKDKVGEIIIGYYQRERNGSIYVDLGKIEGVLPAKNQSPRETYHKNDRIKALITDVK 186 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + G Q++LSRT P F+ + +EVPEIY+ V++ + R+PG R K+AVFS IDP Sbjct: 187 KTNSGLQLVLSRTDPDFVRAVVELEVPEIYDKTVEIHKIVREPGYRTKIAVFSHREDIDP 246 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309 VGACVG++G R+QAV+ EL EKIDI+ + PD F+ NAL PA V VV+ DE + Sbjct: 247 VGACVGLKGVRIQAVIRELEGEKIDILKYDPDPREFIKNALSPAEVLDVVILDESKRQAL 306 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT---QFF---- 362 +VP+EQ SLAIG++G NVRLA++L W+ID+ TE + R Q F Sbjct: 307 AVVPEEQFSLAIGKQGLNVRLANRLADWSIDVKTEAQYEEFDSVVAESRKAVEQLFSDIP 366 Query: 363 ------MQAINVDEIIAHLLVAEGFADVEE-LACVKISEIASIEGFDEETAVEIQGRARE 415 + VDE +A +L G D+E+ + V+ I IEG + +Q + Sbjct: 367 ETIASVAELPGVDEQVAAVLKENGIEDIEQFMQSVESGAIRQIEGLSDTDITAVQSLIND 426 Query: 416 YLEGID----ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E ++ + + ++ EE E G K D+ C Sbjct: 427 TVEFVEDPAPVAAESAAEQIEEDEE------------YVCPECGAKITIDMTTCP 469 >gi|302338537|ref|YP_003803743.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM 11293] gi|301635722|gb|ADK81149.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM 11293] Length = 496 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 154/450 (34%), Positives = 249/450 (55%), Gaps = 19/450 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + ++ ++ I ++V + D + A + +GT + V + + ++++F E+ Sbjct: 5 LAEAIRSLVQDRGISEELVRKTIEDFLLAAYKRKFGTTENAVVRFSEDGNEVAIFAAKEI 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ ++ LK A + +IG + + P +F RVAVQSAKQ Q +RE ++D Sbjct: 65 VENVEDPVTEMPLKEALTYNEECEIGDELLIEINPKEFDRVAVQSAKQKAKQTLREIQKD 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EFK+K GE++ G +R GN+ VDLG +G++ R RE RP DR+K+ IY+ Sbjct: 125 TLYSEFKEKEGEMVIGYYQRERNGNIFVDLGKIEGILPRRYQSPREVYRPNDRIKALIYE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + G Q++LSRTH F+ ++F +EVPE+Y+ V++ + R+PG R K+AV+S+ + Sbjct: 185 VSKSPSGLQIVLSRTHTDFVKRIFELEVPEVYDKTVEIFKIVREPGYRTKIAVYSNRDDV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DPVGACVGM+G R+QAVV EL EKIDI+ + D+ +F+ NAL PA V VV+ DE + Sbjct: 245 DPVGACVGMKGVRIQAVVRELEGEKIDILKYDIDARSFIKNALSPAEVQNVVILDEAKRQ 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR--QKDFNERTQFFM-- 363 +V + QLSLAIG++G NVRLA++L W ID+ T E+ + E F Sbjct: 305 ALAVVEENQLSLAIGKQGLNVRLANRLVDWNIDVKTIEQFEEMDLSAETKKELNALFNDV 364 Query: 364 --------------QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + + E ++ +L+ G +E L + +++ +EG + I Sbjct: 365 EEDDENVEEISRISELPGISERLSEILMQNGVELIETLVGLSGEDLSRLEGVTVQDVETI 424 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCS 439 Q E ++ I+ ++ I + E L Sbjct: 425 QNIISENVDIIEEQEEEAIAQTESHEHLAE 454 >gi|169824466|ref|YP_001692077.1| transcription terminator [Finegoldia magna ATCC 29328] gi|167831271|dbj|BAG08187.1| transcription terminator [Finegoldia magna ATCC 29328] Length = 422 Score = 419 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 149/375 (39%), Positives = 229/375 (61%), Gaps = 12/375 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59 + ++ D + K I R+VV + ++ K+ + S + V IN + G Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++I Sbjct: 62 VNLYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPN 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+ Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-----EEEDSINRQKD 354 +DE VIV ++QLSLAIG+ GQN RLA++LT W IDI E D + Sbjct: 302 FIDEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLNQYLEAYDDGILSVE 361 Query: 355 FNERTQFFMQAINVD 369 F+ F++A ++ Sbjct: 362 FDGEAD-FLEANGIE 375 >gi|194467745|ref|ZP_03073731.1| NusA antitermination factor [Lactobacillus reuteri 100-23] gi|194452598|gb|EDX41496.1| NusA antitermination factor [Lactobacillus reuteri 100-23] Length = 393 Score = 419 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 219/375 (58%), Gaps = 25/375 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65 Query: 66 LEVVEEVE----NYTCQISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRP 178 Q++RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ Sbjct: 126 QRLREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLD 305 Query: 299 VVLDEDV-----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+ +ED V+VP QLSLAIG+RGQN RLA++LT + IDI Sbjct: 306 VIFNEDKPASENEESEETTEGQTERSCTVVVPDNQLSLAIGKRGQNARLAARLTKYKIDI 365 Query: 342 ITEEEDSINRQKDFN 356 +E E + N Q+ Sbjct: 366 KSESEMAENDQESEE 380 >gi|303233744|ref|ZP_07320398.1| transcription termination factor NusA [Finegoldia magna BVS033A4] gi|302495178|gb|EFL54930.1| transcription termination factor NusA [Finegoldia magna BVS033A4] Length = 422 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 149/375 (39%), Positives = 229/375 (61%), Gaps = 12/375 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59 + ++ D + K I R+VV + ++ K+ + S + V IN + G Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++I Sbjct: 62 VNLYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPN 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+ Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT-----EEEDSINRQKD 354 +DE VIV ++QLSLAIG+ GQN RLA++LT W IDI E D + Sbjct: 302 FIDEGQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLNQYLEAYDDGILSVE 361 Query: 355 FNERTQFFMQAINVD 369 F+ F++A ++ Sbjct: 362 FDGEAD-FLEANGIE 375 >gi|157363142|ref|YP_001469909.1| transcription elongation factor NusA [Thermotoga lettingae TMO] gi|157313746|gb|ABV32845.1| NusA antitermination factor [Thermotoga lettingae TMO] Length = 344 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 140/338 (41%), Positives = 220/338 (65%), Gaps = 1/338 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L LL D + EK I +D ++ ++ ++ A + +GT ++ V+I+ TGDI LF++ Sbjct: 2 NLGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ Q+S++ AR DP + G + + +FGR+A Q+AKQV+IQ++RE Sbjct: 62 FDVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIREL 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++RQY + G +I+ V RV + +G + + + E IS E++ G+ +K Y Sbjct: 122 EKERQYEHYSTLAGSVITVEVIRVTSDWADIRVGKIETRLPKREWISGESISAGELIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V ++++GP++++SR P+F+ L +E+PEI N IVQ+KA+ R+PG R K+AV S++ Sbjct: 182 VQSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 +DPVGAC+G GSR+ A++ EL+ EK+DI W+ D ++NAL PA VT V +LD + Sbjct: 242 PQVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILDFE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 RKAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|46446396|ref|YP_007761.1| transcription elongation factor NusA [Candidatus Protochlamydia amoebophila UWE25] gi|46400037|emb|CAF23486.1| putative transcription termination-antitermination factor nusA [Candidatus Protochlamydia amoebophila UWE25] Length = 424 Score = 418 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 152/420 (36%), Positives = 250/420 (59%), Gaps = 10/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I + + EK I R++V+S + +S+Q AAR S++ V I+P+TG+I ++ Sbjct: 2 NKDLIAIFEYLEREKGIKRELVISAIEESLQAAARKSVSGASNVTVTIHPKTGNIDVYCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V++VE + +ISL AR+ DP +IG + + P DFGR+A Q A+Q+I QK+R A Sbjct: 62 KEIVDDVEVPSQEISLLAAREIDPDAEIGQFIDIVVTPKDFGRIAAQKARQIITQKLRGA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ ++ E+ISGT+KR G N+I+DLG + ++ E E + G++V + Sbjct: 122 ERDVIYEEYRHRINELISGTIKRFVRGSNLIIDLGKVEAILPTREYPKTEKYQVGEKVLA 181 Query: 185 YIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V+ E G +V+LSR+HP+F+ +L EVPE+ +G + + + RD G R KL V S Sbjct: 182 LVLEVKDTENGGAEVILSRSHPEFVKQLLVQEVPEVSDGTIIIDKIVRDAGYRTKLTVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRG+RV+ +V EL +EKIDI+ +S D + NAL P + K+ L+E Sbjct: 242 TDLKVDPVGACVGMRGNRVKNIVRELHNEKIDIIPFSNDPIELLQNALSPIEIRKINLNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT---- 359 + G I ++V + + IG++G N RL S+L G+ +++ + + + NE Sbjct: 302 EDGIISIVVEDDDFAAVIGKKGMNARLNSRLIGYDLEVQRMTDYNRAMAIERNELAATDD 361 Query: 360 ----QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 Q + ++ +I LV G+ ++ L E+A+I G E A +I + R+ Sbjct: 362 PTLDQPLVGIEGINSLIFDHLVDAGYHTLKSLLTATPKELAAIPGISLEMADKILEQIRK 421 >gi|295426316|ref|ZP_06818975.1| transcription termination factor NusA [Lactobacillus amylolyticus DSM 11664] gi|295063989|gb|EFG54938.1| transcription termination factor NusA [Lactobacillus amylolyticus DSM 11664] Length = 401 Score = 418 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 209/345 (60%), Gaps = 4/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++V++ + ++ A + Y ++ V+ + G+ + + Sbjct: 2 SKEMLEAFATLEEKKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAV 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV++ + ++SL A + + ++G + + P +FGR+A Q+AKQVI+Q++R Sbjct: 62 KTVVDDDQLQDDRLEVSLSDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ E+ E+I+GTV+R + V V +GN + V+ R + + E P D+++ Sbjct: 122 EAERNHIVDEYSQYEDELITGTVERRDNRFVYVKIGNVEAVMPRSDQMPNETYNPQDKIR 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S Sbjct: 182 VLVTRVGSDSKGAQIVVSRTAPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKIAVKS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-- 301 D +IDPVG CVG RG+RVQ VV EL E IDIV + D + ++ NAL PA V V Sbjct: 242 IDPNIDPVGTCVGQRGARVQNVVNELGGENIDIVRYEDDPSDYIANALSPAEVIAVQFGD 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D++ VIVP QLSLAIG++GQ+VRLA++LTG+ I+I E E Sbjct: 302 DDEEKSALVIVPDYQLSLAIGKKGQSVRLAARLTGYKINIRPESE 346 >gi|256847048|ref|ZP_05552494.1| transcription termination factor NusA [Lactobacillus coleohominis 101-4-CHN] gi|256715712|gb|EEU30687.1| transcription termination factor NusA [Lactobacillus coleohominis 101-4-CHN] Length = 385 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 145/371 (39%), Positives = 218/371 (58%), Gaps = 22/371 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFR 64 + ELL D + EK I +DV+++ + D++ A + Y +++ V+I+ +TGD +F Sbjct: 7 KAELLGAMDVLEKEKGIKKDVIVNALTDALANAYQKNYDDNNANVEVKIDEQTGDFKVFA 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VV+EV N QISL+ A +IG + + P DFGR+A Q+AK V++Q++RE Sbjct: 67 TKKVVDEVTNPIEQISLRDAMHVSHGYEIGDDFKEEVTPNDFGRIAAQTAKSVVLQQLRE 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 ER Y ++ +++ G V R + + ++L G + + + + + E+ R D V+ Sbjct: 127 EERRIVYEKYNKLKDDLVDGEVAREDSRFIYINLTGGVEAAMNKHDQMPNEHYRTHDHVQ 186 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V ++ +GPQV +SRT P + +LF EVPEI GIV++K + R+ G RAK+AVFS Sbjct: 187 VYVTRVLKDTKGPQVFVSRTAPDLLKRLFEKEVPEISQGIVEIKGIVREAGDRAKVAVFS 246 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DS++D VG CVG RG+RVQ +V +L E IDIV + + F+ NAL PA V V+ DE Sbjct: 247 RDSNVDAVGTCVGPRGARVQTIVNQLGGENIDIVKFEEEPEDFIRNALNPAEVKAVIFDE 306 Query: 304 DVGRIE--------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + G IE VIVP +QLSLAIG+RGQNVRLA+QLTG+ IDI Sbjct: 307 NNGEIEENQPKVDGEESEPRVHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDIKP 366 Query: 344 EEEDSINRQKD 354 E + + Sbjct: 367 LSEVDTDDLDE 377 >gi|302528542|ref|ZP_07280884.1| transcription termination factor NusA [Streptomyces sp. AA4] gi|302437437|gb|EFL09253.1| transcription termination factor NusA [Streptomyces sp. AA4] Length = 350 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 131/346 (37%), Positives = 204/346 (58%), Gaps = 27/346 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I D V+ + ++ A + G R++I+ +TG + + Sbjct: 3 IAALRAIERDKDIPFDTVIEAIETALLTAYKHTEGHQPHARIDIDRKTGLVRVL------ 56 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 57 --------------AHTLTSEGEVDEEWDD--TPEGFGRIAATTARQVILQRLRDAEHEK 100 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 Y EF K GEI++G V+R N V++ +G+++GV+ + E ++ E+ G R+K++ Sbjct: 101 TYGEFSAKEGEIVAGVVQRDARANARGMVVIQVGDTEGVLPQAEQVAGESYEHGTRIKAF 160 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ V R RGPQ++LSR+HP + KLF +EVPEI +G V++ AV+R+PG R+K+AV S+ Sbjct: 161 VFGVSRSNRGPQIMLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRSKIAVRSTI 220 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ WS D A FV NAL PA V V V+DE Sbjct: 221 PGVNAKGACIGPMGARVRNVMSELAGEKIDIIDWSDDPAKFVGNALSPAKVVSVRVVDER 280 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 281 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPAEP 326 >gi|312869034|ref|ZP_07729211.1| transcription termination factor NusA [Lactobacillus oris PB013-T2-3] gi|311095460|gb|EFQ53727.1| transcription termination factor NusA [Lactobacillus oris PB013-T2-3] Length = 398 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 21/389 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S E++ D + EK I ++VV+ + +++ A + YG ++ VE N TG+I Sbjct: 3 KSKVNSEMIGALDYLEKEKGIKKEVVIEALEQALESAYKQNYG-DKNVEVEFNATTGNIK 61 Query: 62 LFRLLEVVEEVE----NYTCQISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 ++ + + ++ E + +SL AR D+ + + + P +FGR+A Q+AK Sbjct: 62 VYAVKTITDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAK 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRE 174 QV++Q++RE ER Y ++K EII+G V R + VDLG+ +G + + + E Sbjct: 122 QVVMQRLREEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 + R DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G Sbjct: 182 HYRVHDRIQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 RAK+AV+S+D +IDPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA Sbjct: 242 DRAKVAVYSNDDNIDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPA 301 Query: 295 IVTKVVLDED------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V V+ ++ V+VP +QLSLAIG+RGQN RLA++LT + IDI Sbjct: 302 EVLDVIFNDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIK 361 Query: 343 TEEEDSINRQK-DFNERTQFFMQAINVDE 370 + E + + + E VDE Sbjct: 362 SASEMEELQAQAETAEDQPATDDQPLVDE 390 >gi|158313032|ref|YP_001505540.1| NusA antitermination factor [Frankia sp. EAN1pec] gi|158108437|gb|ABW10634.1| NusA antitermination factor [Frankia sp. EAN1pec] Length = 361 Score = 417 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 139/347 (40%), Positives = 202/347 (58%), Gaps = 28/347 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I D ++ + ++ A + G+ D RV I+ +G++++F Sbjct: 7 ALRGIEREKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Y Sbjct: 59 ------------ARESGPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVTY 103 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+ Sbjct: 104 GQYADREHEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYVV 163 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S + Sbjct: 164 HVARGMHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAAG 223 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++P GAC+G GSRV+AV+ EL EKIDIV WS D A+FV +AL PA V++V + D Sbjct: 224 VNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPASFVGSALSPARVSRVEVTDLASR 283 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E S R + Sbjct: 284 SARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGSEPRAE 330 >gi|320103081|ref|YP_004178672.1| NusA antitermination factor [Isosphaera pallida ATCC 43644] gi|319750363|gb|ADV62123.1| NusA antitermination factor [Isosphaera pallida ATCC 43644] Length = 520 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 161/428 (37%), Positives = 249/428 (58%), Gaps = 37/428 (8%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+L +I D + EK I +D+++ + +I AAR + + + I+P+T I R Sbjct: 2 SLDLPRIIDTIHREKGIPKDLLIDAIQTAILNAARKFFNDSEGLSITIDPQTLKIDATRG 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + + P FGR+A Q+AKQ++IQK REA Sbjct: 62 --------------------------------GERVDPAVFGRIAAQTAKQIMIQKFREA 89 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + EF+ + G++++GTV+R E G V+V+LG +D ++ R E I E L PGDR+++ Sbjct: 90 ERDTLFEEFESQKGDLLTGTVQRFEGGAVLVNLGKTDAILPRPEQIPGEALHPGDRIRAV 149 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +++V+++ + +++LSRTHP F+ KLF +E+PEI + +Q++A++R+ G R K+AV S D Sbjct: 150 VHEVKKQGQRVKIILSRTHPDFVRKLFELEIPEIADNTIQIRALAREAGYRTKVAVASVD 209 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+RGSR++ + EL E+IDIV W+ + NAL PA + +V+L + Sbjct: 210 PKVDAVGACVGVRGSRIKTITDELGGERIDIVRWNDSLQVLIPNALAPAEIDEVMLCGLL 269 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 GR V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T EE + Q F Q Sbjct: 270 GRAIVLVRDDQLSLAIGRRGQNVRLASKLVGWDIEIMTAEELDEV----IDRAIQMFTQI 325 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEI-ASIEGFDEETAVEIQGRAREYLEGIDITL 424 VD +A LV +G ++L+ ++I ++ A+IEG D E A+ I A E E Sbjct: 326 EGVDAELAQNLVEQGILSYDDLSVMEIDDLVATIEGLDHERAIRIVEAAEELAEQQSEES 385 Query: 425 QKKIRELG 432 ++ G Sbjct: 386 PRRKGGRG 393 >gi|269792606|ref|YP_003317510.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100241|gb|ACZ19228.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 369 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 143/351 (40%), Positives = 224/351 (63%), Gaps = 3/351 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + EK + DV+ S + ++ A R G ++ V I+ E G+I L + + Sbjct: 6 EFGKALKQLEAEKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSEVKQ 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV EV +IS++ A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVREVTCPDTEISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSY 185 R + EF D+ G+++ GT+ +VE ++V L ++ ++ R+E + E R GDR K + Sbjct: 126 RQIIFEEFADRTGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRYKFF 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ +GP++++SRTHP + KLF +EVPEI +GI+++K V R+ G R+K+AV S D Sbjct: 186 LLDVRQTTKGPRIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQSLD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 S++DPVGACVG +G+R+++V+ EL E++D++VWS D +V NAL PA V KV L + Sbjct: 246 SNVDPVGACVGPKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPLLDQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + V V +QLSLAIG+ GQNVRLA++LTGW IDI E + + KD Sbjct: 306 ERALRVFVRPDQLSLAIGKAGQNVRLAARLTGWKIDIKVLEPERLPTLKDL 356 >gi|86742245|ref|YP_482645.1| NusA antitermination factor [Frankia sp. CcI3] gi|86569107|gb|ABD12916.1| NusA antitermination factor [Frankia sp. CcI3] Length = 365 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 141/339 (41%), Positives = 198/339 (58%), Gaps = 28/339 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I D ++ M ++ A G+ D RV I+ TGD+S+ Sbjct: 7 ALRGIEREKDIAFDTLVQAMETALLTAYHHTAGSAQDARVVIDRTTGDVSVL-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 AR++ P G P DFGR+A +AKQVI+Q++REA+++ Y Sbjct: 59 ------------AREQGPD---GTSREYDDTPADFGRIATMTAKQVIMQRLREAQQEVTY 103 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ D+ EI+SG V+ E V+V+LG +GV+ E + E L GDR+K Y+ Sbjct: 104 GQYADREHEIVSGVVQHHEQRAGSRVVLVNLGTVEGVLPPAEQVPGERLEHGDRIKCYVV 163 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S + Sbjct: 164 HVARGPHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSRVAG 223 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++P GAC+G GSRV+AV+ ELR EKIDIV WS D ATFV +AL PA V +V + D Sbjct: 224 VNPKGACIGPMGSRVRAVMAELRGEKIDIVDWSADPATFVGSALSPARVARVEVTDPASR 283 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ Sbjct: 284 SARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDT 322 >gi|111225121|ref|YP_715915.1| transcription elongation protein nusA [Frankia alni ACN14a] gi|111152653|emb|CAJ64394.1| Transcription elongation protein nusA [Frankia alni ACN14a] Length = 365 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 141/342 (41%), Positives = 198/342 (57%), Gaps = 28/342 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I D ++ M ++ A G+ D RV I+ TG++S+ Sbjct: 7 ALRGIEREKDIAFDTLVQAMETALLTAYHHTAGSAPDARVVIDRTTGEVSVL-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Y Sbjct: 59 ------------AREPGPD---GTSREYDDTPADFGRIATMTAKQVIMQRLREAQQEVTY 103 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+ Sbjct: 104 GQYADREHEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERLEHGDRIKCYVV 163 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S + Sbjct: 164 HVARGPHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSKVAG 223 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++P GAC+G GSRV+AV+ EL EKIDIV WS D ATFV +AL PA V +V + D Sbjct: 224 VNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGSALSPARVARVEVTDLASR 283 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ ED Sbjct: 284 SARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDAEDR 325 >gi|261881035|ref|ZP_06007462.1| N utilization substance protein A [Prevotella bergensis DSM 17361] gi|270332217|gb|EFA43003.1| N utilization substance protein A [Prevotella bergensis DSM 17361] Length = 424 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 148/414 (35%), Positives = 236/414 (57%), Gaps = 5/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ +K IDR ++SV+ +S + YG+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKTDKDIDRTTLVSVLEESFRNVLAKKYGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VE EVE+ QISL A+ +P ++G VS+P+ FGR A+ + +Q + K+ E E Sbjct: 73 VENGEVEDDNKQISLADAQKIEPDYEVGEDVSEPVDFAKFGRRAILTLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V +V V+ VD N++ ++ R E I R+ R G+ +++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQVWKREVLLVDDENNELILPRSEQIPRDQYRKGETLRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P FM +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 193 IDRVENENNNPKIILSRTSPVFMERLLEQEVPEIADGLIAIKKIARMPGERAKIAVESYD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA +T + LDE+ Sbjct: 253 DRIDPVGACVGVRGSRVHGIVRELCNENIDVINWTANTMLFIQRALSPAKITSISLDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + +V + E++SLAIGR G N++LAS LT +TID+ ++ Q++ + F Sbjct: 313 RKADVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVYRVVNENEQGQQEDDVYLDQFND- 371 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ I + A G + + + +EET + R+ E Sbjct: 372 -EIDQWIIDAIKAIGLDTAKAVMNAPREMLVERADLEEETVDHVLEVLRKEFES 424 >gi|116618453|ref|YP_818824.1| transcription elongation factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097300|gb|ABJ62451.1| Transcription elongation factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 365 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 141/348 (40%), Positives = 216/348 (62%), Gaps = 4/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++ Sbjct: 2 SKELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQV 61 Query: 66 LEVVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+R Sbjct: 62 KHVVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 EA R Y +F D EII+G V R + + V+L GN + V+ ++ + E GDR+ Sbjct: 122 EAGRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPNDQMPNERYHMGDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV+ Sbjct: 182 KVLVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 242 THDTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFD 301 Query: 303 EDVGRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 R VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + Sbjct: 302 PANDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAAA 349 >gi|227431859|ref|ZP_03913883.1| transcription termination factor NusA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352401|gb|EEJ42603.1| transcription termination factor NusA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 365 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 141/348 (40%), Positives = 215/348 (61%), Gaps = 4/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++ Sbjct: 2 SKELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQV 61 Query: 66 LEVVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+R Sbjct: 62 KHVVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 EA R Y +F D EII+G V R + + V+L GN + V+ + + E GDR+ Sbjct: 122 EAGRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPSDQMPNERYHMGDRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K + V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV+ Sbjct: 182 KVLVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVY 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 242 THDTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFD 301 Query: 303 EDVGRIE-VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 R VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + Sbjct: 302 PANDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAAA 349 >gi|238063380|ref|ZP_04608089.1| transcription elongation factor nusA [Micromonospora sp. ATCC 39149] gi|237885191|gb|EEP74019.1| transcription elongation factor nusA [Micromonospora sp. ATCC 39149] Length = 347 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 135/356 (37%), Positives = 201/356 (56%), Gaps = 27/356 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G S RVEI+ + G ++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAESHARVEIDRKNGAALVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + D P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQELDDDGTVVREWDD--TPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARSEKGIVSVDLGKLEGVLPQSEQVPGERYTHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSAV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 223 PGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + + Sbjct: 283 TRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQATTAARSAADHVR 338 >gi|110803140|ref|YP_698976.1| transcription elongation factor NusA [Clostridium perfringens SM101] gi|110683641|gb|ABG87011.1| N utilization substance protein A [Clostridium perfringens SM101] Length = 366 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 144/353 (40%), Positives = 225/353 (63%), Gaps = 4/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVVSVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Q++ Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEELLQEE 354 >gi|317125351|ref|YP_004099463.1| NusA antitermination factor [Intrasporangium calvum DSM 43043] gi|315589439|gb|ADU48736.1| NusA antitermination factor [Intrasporangium calvum DSM 43043] Length = 339 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 131/341 (38%), Positives = 202/341 (59%), Gaps = 13/341 (3%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I DV++ + ++ A G+ RVE++ +TG + ++ Sbjct: 5 LAALRALERERGISLDVLIPAIEQALLVAYHRTEGSYRSARVELDRKTGHVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EE + + + + +P + P+ FGR+A +A+QVI+Q++R+ E ++ Sbjct: 61 EEGDLLPAE-EGERPQRGEPGPEFDD------TPVGFGRIAASTARQVIVQRLRDLEDEQ 113 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK + G++ISG +++ + NV+VD G +G++ E + E G+R++ Y+ Sbjct: 114 ILGDFKGREGDVISGVIQQSQDPRNVLVDFGAVEGILPLAEQVPGERYVHGERLRCYVVS 173 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+R RGPQV LSRTHP + LF EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 174 VKRGPRGPQVGLSRTHPNLVRTLFKFEVPEIADGTVEIAALARESGHRTKIAVHSKVPGV 233 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G+RV+AV+TELR EKIDIV +S D ATFV AL PA V V ++D Sbjct: 234 NAKGACIGPMGARVRAVMTELRGEKIDIVDYSEDPATFVAAALSPARVQSVEIVDAAART 293 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 294 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTEAT 334 >gi|227872001|ref|ZP_03990386.1| transcription elongation factor NusA [Oribacterium sinus F0268] gi|227842144|gb|EEJ52389.1| transcription elongation factor NusA [Oribacterium sinus F0268] Length = 390 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 143/374 (38%), Positives = 217/374 (58%), Gaps = 4/374 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL D + EK I + ++ + S+Q A ++ +G+ ++ V +NP+T S+ Sbjct: 2 NEELRLALDMLEKEKKISKQALIEAIELSLQTACKNHFGSADNVHVSMNPDTAVFSVLAD 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V + + +ISL+ A + DPS +G VV P+ F R+A Q+AK VI+QK+RE Sbjct: 62 KTVVEKVGDKSTEISLEEAHEMDPSYTLGDVVQVPIDSKSFSRIAAQNAKGVIVQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + E+ +I + V++ +I++LG DG + E I ENL PG R K Y Sbjct: 122 ERKNLFEEYYAMSKKIFTALVEKNTGRALIMNLGKVDGYLAEAEQIPGENLTPGQRAKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+++LSRTHP+ + KLF EV E+ GIV++K+++R+ GSR K+AV S++ Sbjct: 182 VVEVKDSPKGPKLMLSRTHPELVRKLFFEEVSELREGIVEIKSIAREAGSRTKMAVISNE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ G+RV +V ELR EKIDI+ + + A + N+L PA V V+ D D Sbjct: 242 EDVDAVGACVGLNGNRVNTIVEELRGEKIDIINYDENPAYLIENSLSPAKVIAVIADPDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN----ERTQF 361 VIVP QLSLAIG+ GQN RLA++LT + IDI +E + D Sbjct: 302 KEALVIVPDNQLSLAIGKEGQNARLAAKLTNYKIDIKSESQAQEQGIFDEMGIDYHGESL 361 Query: 362 FMQAINVDEIIAHL 375 + + DE Sbjct: 362 EEEDLGYDEDYEDA 375 >gi|297623578|ref|YP_003705012.1| transcription termination factor NusA [Truepera radiovictrix DSM 17093] gi|297164758|gb|ADI14469.1| transcription termination factor NusA [Truepera radiovictrix DSM 17093] Length = 397 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 134/357 (37%), Positives = 223/357 (62%), Gaps = 1/357 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + + +A+E+++D++ +L+ +++++A I V ++PE+G+I + + Sbjct: 2 NKDFIDALNQLAHERNLDKEQLLASFEEALEQAYERNVEPGKQIEVHVDPESGEIDVLVV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ ++SL+ AR+ DP++++G + P+ P F R+AVQ+ KQVI QK+REA Sbjct: 62 KRVVETVEDPGLEMSLEEARELDPTVEVGMEMELPVDPERFTRIAVQTTKQVITQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER + E+KD+ G++I+ V R + NV VDLG + ++ E I E G R+K Sbjct: 122 ERALVFNEYKDRAGDVITAVVSRTDNKRNVFVDLGRGEAIMPPKEQIPGERYMVGMRLKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RGP +L+SR P+ + L E+PEI + V++KAV+R+ G R+K+AV S Sbjct: 182 FVMKVELGNRGPSILVSRAAPELLEYLMRQEIPEIADDTVEIKAVAREAGQRSKVAVVSR 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++DP+GAC+G RG+R+QAV EL+ E++DI++W P F+ NAL PA V + ++ + Sbjct: 242 NPNVDPIGACIGHRGARIQAVTGELQRERVDIILWDPSPREFIRNALSPAKVGTIEVNSE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 G +V V +QLSLAIG+ GQNVRLA++LTG+ ID++ E S ++ Sbjct: 302 TGEAKVTVSNDQLSLAIGKGGQNVRLAAKLTGFKIDLVASEHISDLDAALQAAASRV 358 >gi|296269042|ref|YP_003651674.1| NusA antitermination factor [Thermobispora bispora DSM 43833] gi|296091829|gb|ADG87781.1| NusA antitermination factor [Thermobispora bispora DSM 43833] Length = 333 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 131/351 (37%), Positives = 204/351 (58%), Gaps = 24/351 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I D+V+ + D++ A G R E++ ETG ++++ Sbjct: 5 MSVLRSLEREKDISFDLVVKAIEDALLIAYHRTEGAAPKARAELDRETGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + ++ D P +F R+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AAELDENGEVIREYDD--TPSNFSRIAATTAKQVILQQLRDAEDEI 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + GE++SG +++ + V VDLG + ++ +E + E R GDR++ Y+ Sbjct: 103 NFGEFASREGELVSGVIQQGRDSRVVHVDLGKIEAILPPNEQVPGEEYRHGDRIRCYVVQ 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V++ +GP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 163 VKKGPKGPSVTLSRTHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G GSRV+ V+ EL EKIDI+ WS D A FV NAL PA V++V V+D + Sbjct: 223 NAKGACIGPMGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPARVSRVEVVDRENRV 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V VP QLSLAIG+ GQN RLA++LTGW IDI + +++ D + R Sbjct: 283 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTQEAPADPADVSAR 333 >gi|297565903|ref|YP_003684875.1| transcription termination factor NusA [Meiothermus silvanus DSM 9946] gi|296850352|gb|ADH63367.1| transcription termination factor NusA [Meiothermus silvanus DSM 9946] Length = 393 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 144/351 (41%), Positives = 217/351 (61%), Gaps = 10/351 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPE 56 + ++ VA E+ + D +++ +S++ A G + V ++P Sbjct: 2 NKDFVEALQQVALERGVTADELITAFEESLRLAYLRQKGYKPKDVEEGLGPVVEVHLDPA 61 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 G + + + VVE+VE+ +ISL A DP + +G + P+ P +F R+AVQ AKQ Sbjct: 62 GGGLEVLEIKTVVEKVEDPDKEISLADALAYDPDVQLGEEMEFPVDPEEFSRIAVQIAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175 V+ Q+++EAER+R + E+KDK GE+I+G V RV+ GNV VDLG + ++ E I E Sbjct: 122 VLTQRLKEAERNRVHTEYKDKEGEVITGQVTRVDNRGNVYVDLGRGEALMPPKEQIPSER 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 PG RVK Y+ V+R +GP +++SR + + L EVPEI GIV++KAV+R+PGS Sbjct: 182 YHPGQRVKVYLKQVQRSAKGPSLIVSRASEELLKYLLRQEVPEINEGIVEIKAVAREPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WS + F+ NAL PA Sbjct: 242 RSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSANPREFIRNALSPAQ 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V + D + R +V+V K+Q SLAIG+ GQNVRLAS+LTG+ ID EE Sbjct: 302 VGNIETDNETKRAKVVVSKDQHSLAIGKAGQNVRLASKLTGYEIDFEEAEE 352 >gi|259503125|ref|ZP_05746027.1| N utilization substance protein A [Lactobacillus antri DSM 16041] gi|259168991|gb|EEW53486.1| N utilization substance protein A [Lactobacillus antri DSM 16041] Length = 389 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 138/382 (36%), Positives = 222/382 (58%), Gaps = 21/382 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + + Sbjct: 1 MIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNATTGNIKVYAVKTI 59 Query: 69 VEEVE----NYTCQISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++ E + +SL AR D+ + + + P +FGR+A Q+AKQV++Q++ Sbjct: 60 TDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQVVMQRL 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ R DR Sbjct: 120 REEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYRVHDR 179 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+AV Sbjct: 180 IQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVAV 239 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ Sbjct: 240 YSNDDNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVIF 299 Query: 302 DED------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++ V+VP +QLSLAIG+RGQN RLA++LT + IDI + E Sbjct: 300 NDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKSASEMEE 359 Query: 350 NRQKDFNERTQFFM-QAINVDE 370 + ++ + Q +VDE Sbjct: 360 IQAQEALDEDQPVADDQPSVDE 381 >gi|289643647|ref|ZP_06475760.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata] gi|289506538|gb|EFD27524.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata] Length = 362 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 137/342 (40%), Positives = 198/342 (57%), Gaps = 28/342 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK I D ++ + ++ A R G +D RV I+ +G ++++ Sbjct: 7 ALRGIEREKDIAFDTLVEAIETALLTAYRHTDGAAADARVVIDRTSGHVAVYAR------ 60 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + SL G P DFGR+A +AKQVI+Q++REA+++ Y Sbjct: 61 ------ETSLD-----------GMTREWEDTPADFGRIATMTAKQVIMQRLREAQQEITY 103 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ D+ E++SG V+ E V+VDLG +GV+ E + E GDR+K Y+ Sbjct: 104 GQYADREHEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERFEHGDRIKCYVV 163 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R GP V LSRTHP+ + LF MEVPE+ +G V++ A++R+ G R+K+AV S+ + Sbjct: 164 SVTRGVHGPTVTLSRTHPELVKGLFRMEVPEVADGTVEIAAIAREAGHRSKIAVRSTVAG 223 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++P GAC+G G+RV+AV+ EL EKIDIV WS D A FV NAL PA V +V + D V Sbjct: 224 VNPKGACIGPMGARVRAVMAELHGEKIDIVDWSADPAAFVGNALSPARVARVEVADPAVR 283 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 284 AARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGA 325 >gi|168214478|ref|ZP_02640103.1| N utilization substance protein A [Clostridium perfringens CPE str. F4969] gi|170714047|gb|EDT26229.1| N utilization substance protein A [Clostridium perfringens CPE str. F4969] Length = 366 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 144/353 (40%), Positives = 225/353 (63%), Gaps = 4/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSSTPSEYIENALSPAKVISVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Q++ Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEELLQEE 354 >gi|297520389|ref|ZP_06938775.1| transcription elongation factor NusA [Escherichia coli OP50] Length = 323 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 138/340 (40%), Positives = 209/340 (61%), Gaps = 18/340 (5%) Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGS Sbjct: 1 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 60 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA Sbjct: 61 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 120 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + Sbjct: 121 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 180 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 181 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 240 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L I ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 241 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE- 299 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 300 ----------------GLTDEKAGALIMAAR-NICWFGDE 322 >gi|18310671|ref|NP_562605.1| transcription elongation factor NusA [Clostridium perfringens str. 13] gi|110800366|ref|YP_696376.1| transcription elongation factor NusA [Clostridium perfringens ATCC 13124] gi|168211423|ref|ZP_02637048.1| N utilization substance protein A [Clostridium perfringens B str. ATCC 3626] gi|168216976|ref|ZP_02642601.1| N utilization substance protein A [Clostridium perfringens NCTC 8239] gi|169342667|ref|ZP_02863708.1| N utilization substance protein A [Clostridium perfringens C str. JGS1495] gi|18145352|dbj|BAB81395.1| probable transcriptional terminator [Clostridium perfringens str. 13] gi|110675013|gb|ABG84000.1| N utilization substance protein A [Clostridium perfringens ATCC 13124] gi|169299173|gb|EDS81243.1| N utilization substance protein A [Clostridium perfringens C str. JGS1495] gi|170710583|gb|EDT22765.1| N utilization substance protein A [Clostridium perfringens B str. ATCC 3626] gi|182380937|gb|EDT78416.1| N utilization substance protein A [Clostridium perfringens NCTC 8239] Length = 366 Score = 414 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 144/353 (40%), Positives = 225/353 (63%), Gaps = 4/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Q++ Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEELLQEE 354 >gi|331698436|ref|YP_004334675.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326953125|gb|AEA26822.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 348 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 133/344 (38%), Positives = 198/344 (57%), Gaps = 29/344 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I D+VL + ++ A + G R++I+ +TG + + Sbjct: 5 IAALRAIERDKDIPFDMVLEAIETALLTAYKHTDGHEPHARIDIDRKTGLVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ + D P FGRVA +A+QVI+Q++R+AE +R Sbjct: 59 --------------AQELGDDGQVAREWDD--TPEGFGRVAATTARQVIVQRLRDAEHER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN--SDGVIRRDETISRENLRPGDRVK 183 + EF K GEII+G V+ N V+V L ++GV+ + E + E + GDR++ Sbjct: 103 TFGEFSAKEGEIITGEVQADSRANARGVVVVSLSGSQAEGVLPQTEQVPGERYQHGDRLR 162 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V R RG Q+ LSRTHP + KLF +EVPE+ +G V++ AV+R+ G R K+AV S Sbjct: 163 CYVLGVSRGPRGTQITLSRTHPNLVRKLFALEVPELVDGSVEIVAVAREAGHRTKIAVRS 222 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 + ++P GAC+G G+RV+ V++EL EKIDI+ WS D ATFV NAL P+ V V V+D Sbjct: 223 TVPGVNPKGACIGPMGARVRGVMSELAGEKIDIIDWSDDPATFVGNALSPSKVVSVTVID 282 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 AKTRTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDSD 326 >gi|257055490|ref|YP_003133322.1| transcription elongation factor NusA [Saccharomonospora viridis DSM 43017] gi|256585362|gb|ACU96495.1| transcription termination factor NusA [Saccharomonospora viridis DSM 43017] Length = 348 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 135/356 (37%), Positives = 203/356 (57%), Gaps = 27/356 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + VL + ++ A + G R++I+ +TG + + Sbjct: 5 IAALRAIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +A D + ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 58 -------------IAYTLDENGEVVEEWDD--TPEGFGRIAAATARQVILQRLRDAEHEK 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 Y EF + GEI++G V+R G VIV +G+++GV+ E + E G R+K+Y Sbjct: 103 TYGEFSAQEGEIVAGVVQRDAKANARGMVIVQVGDTEGVLPPAEQVPGEVYEHGARLKAY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 163 VVGVSRTARGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ S D A FV NAL PA V V V+DE Sbjct: 223 PGVNAKGACIGHVGARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Q+ + + Sbjct: 283 TKTARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPEPGEQQHMDPAEK 338 >gi|167746758|ref|ZP_02418885.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662] gi|317471572|ref|ZP_07930918.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA] gi|167653718|gb|EDR97847.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662] gi|316900951|gb|EFV22919.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA] Length = 391 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 221/345 (64%), Gaps = 5/345 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK ID+DV++ + +S+ A + +G ++ V ++ ETGDI ++ E Sbjct: 3 ELIDALNQLEKEKHIDKDVIMEAIENSLVAACKRDFGNADNVVVNMDRETGDIVVYAEKE 62 Query: 68 VVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE E + QISL A+ DP ++G +V + P DFGR+A A+ VI+QK++ Sbjct: 63 VVETADGEDFDPALQISLAKAKAMDPKYELGDIVRVEITPKDFGRIAAMHARSVIVQKIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 E ER + F K +I++G V+R NV V L +D ++ + E I E +P +R+ Sbjct: 123 EEERRVVFDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFQPTERI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K YI +V+ RGP++L+SRTHP + +LF EV EI +GIV++K + R+ GSR KLAV+ Sbjct: 183 KLYIVEVKDTNRGPRILVSRTHPDLVKRLFEKEVAEIQDGIVEIKNIVREAGSRTKLAVW 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D ++DPVGACVGM G+RV A+V +L+ EKIDI+ W+ D ++ NAL P+ V V +D Sbjct: 243 SNDPNVDPVGACVGMNGARVNAIVNDLKGEKIDIINWNEDPCVYIENALSPSKVVSVSVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 303 VEEKSAQVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQA 347 >gi|283782403|ref|YP_003373158.1| NusA antitermination factor [Pirellula staleyi DSM 6068] gi|283440856|gb|ADB19298.1| NusA antitermination factor [Pirellula staleyi DSM 6068] Length = 404 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 154/421 (36%), Positives = 243/421 (57%), Gaps = 35/421 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+I D++ EK+ID+DVV + ++ AA+ YG +DI + I+ TG +S Sbjct: 2 NPADMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALS--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + + DP GR+ Q+AKQVIIQK+RE Sbjct: 59 ---------------GIADGQALDPE-------------EISGRIGAQTAKQVIIQKIRE 90 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD E+ D++G++I+G V R E IV LG + ++ R E I E P +RV++ Sbjct: 91 AERDSLLGEYGDQIGQLINGVVTRSEGAATIVSLGTIEAILPRSEQIPGETHHPNERVRA 150 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +++V+ + +V+LSRT PQF+ +LF E+PEI +G++ V A++R+P R+K+AV S+ Sbjct: 151 IVFEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVSST 210 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +D VGACVG+RG+R++ +V EL E+IDIV WS D+ T + +L+PA V +V+L + Sbjct: 211 DQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLCDM 270 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +GR V+V ++QLSLAIGR+GQNVRLAS+L GW I+I+T +E + + F + Sbjct: 271 IGRAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDELE----QQIDRAVGGFSK 326 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 V E +A LV +G+ ++L+ ++ + + G EE EI +A + Sbjct: 327 IEGVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQAETLATDAERAA 386 Query: 425 Q 425 Sbjct: 387 D 387 >gi|182414628|ref|YP_001819694.1| NusA antitermination factor [Opitutus terrae PB90-1] gi|177841842|gb|ACB76094.1| NusA antitermination factor [Opitutus terrae PB90-1] Length = 408 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 143/406 (35%), Positives = 246/406 (60%), Gaps = 4/406 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK I R +++ +A++++ AA+ + ++++EIN + G + + LL+ Sbjct: 4 EILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWCLLK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V N +I ++ A+ P IG ++ + P GR+A Q+A+Q ++Q++R+ E+ Sbjct: 64 VVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DR + +FKD+VG I++GTV+R E ++ +DLG ++ V+ E + E +PG+R++ + Sbjct: 124 DRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGKAEAVMPAKEQVPGEEYQPGERIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 ++ RGP+++L+R P+F+ +LF +EV EI +G V+++A +R+PG R K+AV S+D Sbjct: 184 NIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVISTDPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+ +V EL EKIDI+ + +I A++PA+ ++ LDE R Sbjct: 244 VDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDEKNHR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 I + V + L++AIGR+GQN RL S+L GW +DI EE ++A Sbjct: 304 ILLKVATDDLAIAIGRKGQNARLTSRLIGWRLDI---EEFRAVGDDPRGNAIASLVKAFA 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +D +A LV G V+ +++ GF E A +I GR Sbjct: 361 LDATVAGRLVDMGINSPAAFEGVEANDLVDA-GFTEAEATDIIGRV 405 >gi|187735458|ref|YP_001877570.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835] gi|187425510|gb|ACD04789.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835] Length = 431 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 247/426 (57%), Gaps = 16/426 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 ++ + D EK + R+ +L + + A R + G+++ +R EIN + G + +F Sbjct: 4 DIKALIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVRIFA 63 Query: 65 LLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 LEVV + E + QI L +A D + + ++ + P FGR+AVQ+A+Q ++QK+ Sbjct: 64 DLEVVPDEEYSDKFNQIPLSLAVKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTMLQKL 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +AE++ Y EFKD+ G++++GT++R E G++ VDLG +GV+ E + E+ GDR+ Sbjct: 124 LDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGKFEGVMTSRERVPNEDYSVGDRM 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGP+V+LSR+HP + +LF EV EI + V++ ++R+ G R K+AV Sbjct: 184 RFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTKVAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DPVGACVGMRG+RV+ +V EL +EK+DI+ W+ D TFV AL P ++ +D Sbjct: 244 SHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPREITVD 303 Query: 303 EDVGRIEVIVPKE-QLSLAIGRRGQNVRLASQLTGWTIDIIT----EEE------DSINR 351 E+ +I VIV + LS AIGRRGQN RL S+L GW + + E E + Sbjct: 304 EEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAAAEEV 363 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + + + + E A LV G D+ L + S+IA G E A +I Sbjct: 364 MRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAAQILD 423 Query: 412 RAREYL 417 +AR+ + Sbjct: 424 KARDLI 429 >gi|303235674|ref|ZP_07322281.1| transcription termination factor NusA [Prevotella disiens FB035-09AN] gi|302484121|gb|EFL47109.1| transcription termination factor NusA [Prevotella disiens FB035-09AN] Length = 409 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 145/414 (35%), Positives = 237/414 (57%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ + KSIDR ++SV+ +S + +YG+ + V +NP+ GD ++R V Sbjct: 1 MIETFNEFKETKSIDRTTLVSVLEESFRNVIAKIYGSDENFDVIVNPDKGDFEIYRNRVV 60 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EV++ +ISL A+ P ++G VS+P+ FGR A+ + +Q + KV E E Sbjct: 61 VADGEVQDENKEISLTDAQKIVPDYEVGEDVSEPVDFAKFGRRAILNLRQTLSSKVLELE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IISG V +V V+ VD N++ ++ + E I R+ R G+ +++ Sbjct: 121 HDSLYNKYKDRVGQIISGEVYQVWKREVLLVDEDNNELILPKGEQIPRDQYRKGETIRAV 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 181 ILRVDNENNNPKIILSRTAPTFLERLLEAEVPEIEDGLISIKGIARMPGERAKIAVESYD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ Sbjct: 241 DRIDPVGACVGVRGSRVHGIVRELCNENIDVINWTANTKLFIQRALSPAKVSSLTIDEEN 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + F Sbjct: 301 KKAEVFLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDE---QTSEEDIYLDEFSD- 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G ++ + +EET + R E Sbjct: 357 -EIDKWVIDAIKSIGLDTARQVLNAPREMLIEKADLEEETVDNVLNILRAEFES 409 >gi|159036964|ref|YP_001536217.1| transcription elongation factor NusA [Salinispora arenicola CNS-205] gi|157915799|gb|ABV97226.1| NusA antitermination factor [Salinispora arenicola CNS-205] Length = 347 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 137/346 (39%), Positives = 199/346 (57%), Gaps = 27/346 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ +TG ++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGVALVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + D P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQEMDADGGVVREWDD--TPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTA 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V V+D Sbjct: 223 AGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDVEPARP 328 >gi|227514704|ref|ZP_03944753.1| transcription termination factor NusA [Lactobacillus fermentum ATCC 14931] gi|227086908|gb|EEI22220.1| transcription termination factor NusA [Lactobacillus fermentum ATCC 14931] gi|299783112|gb|ADJ41110.1| Transcription termination factor NusA [Lactobacillus fermentum CECT 5716] Length = 408 Score = 412 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 147/403 (36%), Positives = 230/403 (57%), Gaps = 29/403 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 +R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++ Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 + ER+ + ++ +++ G V R + + V+LG+ + + + + + E+ R DR+ Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185 Query: 183 KSYIYDV--RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+ Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305 Query: 301 LDEDVGRIE---------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE+ G ++ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I Sbjct: 306 FDENNGEVDEPASVDENGRKHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365 Query: 340 DIITEEEDS---INRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 DI + + + + + E + QA +D+ A E Sbjct: 366 DIKSSSQAAALEEAQPEPAAEVVEQPTQAPELDQA-ADSFADE 407 >gi|254369910|ref|ZP_04985919.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp. holarctica FSC022] gi|157122880|gb|EDO66997.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp. holarctica FSC022] Length = 447 Score = 412 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 151/476 (31%), Positives = 277/476 (58%), Gaps = 38/476 (7%) Query: 47 SDIRVEINPETGDISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP 103 +I V+I+ TGD R+ +V E++ +Y+ ++ V +++ ++ G V+ +P+ Sbjct: 1 MNIEVKIDRVTGDFKADRVWHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEV 60 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SD 162 ++GR+A AKQ++++K++ ER++ +++K+G+I+ G +KR Y ++VDLGN ++ Sbjct: 61 KEYGRIAATMAKQILMKKIKNFEREKSARFYQNKIGDIVYGEIKRTTYEILVVDLGNNAE 120 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIY 220 G++ + + I+RE R GD++++ + V ++ G ++LSR+ + LF +EVPE+ Sbjct: 121 GILPKKDLIARERYRVGDKIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVE 180 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 ++ + V R+ G R+K+ V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ Sbjct: 181 EELINIVNVVREHGFRSKVTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWN 240 Query: 281 PDSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 D + IN+L P A + +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW Sbjct: 241 EDIVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGW 300 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 I+++++ E + + F++A+++D A +L+ EG +E+LA + +E+ Sbjct: 301 KINVLSDAEQEEKQM----SIVEKFVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLE 356 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 IEGFDEE E+Q RA+ + + +++L + G+ + L +N I Sbjct: 357 IEGFDEEIVDELQERAKAVILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIV 410 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 TMEDLA SVD+L L + ++Q ++I+ AR W E Sbjct: 411 TMEDLAELSVDEL-----------------LDIVDIDEEQATNLIMQARAP--WFE 447 >gi|21224053|ref|NP_629832.1| transcription elongation factor NusA [Streptomyces coelicolor A3(2)] gi|7801276|emb|CAB91140.1| putative transcriptional termination/antitermination factor [Streptomyces coelicolor A3(2)] Length = 340 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 133/347 (38%), Positives = 198/347 (57%), Gaps = 21/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPDDLEEGQAAREFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E + + Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPSDASPE 332 >gi|148543928|ref|YP_001271298.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016] gi|184153324|ref|YP_001841665.1| transcription termination-antitermination factor [Lactobacillus reuteri JCM 1112] gi|227364837|ref|ZP_03848884.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3] gi|325682537|ref|ZP_08162054.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A] gi|148530962|gb|ABQ82961.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016] gi|183224668|dbj|BAG25185.1| transcription termination-antitermination factor [Lactobacillus reuteri JCM 1112] gi|227070100|gb|EEI08476.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3] gi|324978376|gb|EGC15326.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A] Length = 395 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 218/377 (57%), Gaps = 27/377 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65 Query: 66 LEVVEEVE----NYTCQISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRP 178 Q++RE ER Y +K EII+G V R + VDLG+ +G + + + E+ Sbjct: 126 QRLREEERKIIYDRYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLD 305 Query: 299 VVLDED-------------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V+ +E+ V+VP QLSLAIG+RGQN RLA++LT + I Sbjct: 306 VIFNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKI 365 Query: 340 DIITEEEDSINRQKDFN 356 DI +E E + N Q+ Sbjct: 366 DIKSESEMAENDQESEE 382 >gi|256784869|ref|ZP_05523300.1| transcription elongation factor NusA [Streptomyces lividans TK24] gi|289768763|ref|ZP_06528141.1| transcription termination factor NusA [Streptomyces lividans TK24] gi|289698962|gb|EFD66391.1| transcription termination factor NusA [Streptomyces lividans TK24] Length = 340 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 200/353 (56%), Gaps = 21/353 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPDDLEEGQAAREFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E + + + + Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPSDASPEQSSGRR 338 >gi|182626384|ref|ZP_02954138.1| N utilization substance protein A [Clostridium perfringens D str. JGS1721] gi|177908335|gb|EDT70883.1| N utilization substance protein A [Clostridium perfringens D str. JGS1721] Length = 366 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 143/353 (40%), Positives = 224/353 (63%), Gaps = 4/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ TV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPSTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Q++ Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEELLQEE 354 >gi|184155206|ref|YP_001843546.1| transcription termination-antitermination factor NusA [Lactobacillus fermentum IFO 3956] gi|260662294|ref|ZP_05863190.1| transcription termination factor NusA [Lactobacillus fermentum 28-3-CHN] gi|183226550|dbj|BAG27066.1| transcription termination-antitermination factor NusA [Lactobacillus fermentum IFO 3956] gi|260553677|gb|EEX26569.1| transcription termination factor NusA [Lactobacillus fermentum 28-3-CHN] Length = 408 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 147/403 (36%), Positives = 230/403 (57%), Gaps = 29/403 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 +R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++ Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRV 182 + ER+ + ++ +++ G V R + + V+LG+ + + + + + E+ R DR+ Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185 Query: 183 KSYIYDV--RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+ Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305 Query: 301 LDEDVGRIE---------------------VIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE+ G ++ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I Sbjct: 306 FDENNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365 Query: 340 DIITEEEDS---INRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 DI + + + + + E + QA +D+ A E Sbjct: 366 DIKSSSQAAALEEAQPEPAAEVVEQPTQAPELDQA-ADSFADE 407 >gi|300788185|ref|YP_003768476.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] gi|299797699|gb|ADJ48074.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] Length = 348 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 130/341 (38%), Positives = 199/341 (58%), Gaps = 27/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + V+ + ++ A + G S R++I+ +TG + + Sbjct: 5 IAALRAIERDKDIPFETVIEAIETALLTAYKHTEGHQSHARIDIDRKTGLVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------AHTLTHDGQVDEEWDD--TPEGFGRIAATTARQVILQRLRDAEHEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF K GEI++G ++R N V+V +G+++GV+ E ++ E+ G R+K+Y Sbjct: 103 TFGEFSTKEGEIVAGVIQRDARANARGMVVVQVGDTEGVLPSGEQVAGESYEHGSRIKAY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSR+HP + KLF +EVPEI +G V++ AV+R+PG R K+AV S+ Sbjct: 163 VVTVSRSNRGPQITLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRTKIAVKSTV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ +S D A FV NAL PA V V V+DE Sbjct: 223 PGVNAKGACIGPVGARVRNVMSELAGEKIDIIDFSEDPARFVGNALSPAKVVSVRVVDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 323 >gi|312127897|ref|YP_003992771.1| transcription termination factor nusa [Caldicellulosiruptor hydrothermalis 108] gi|311777916|gb|ADQ07402.1| transcription termination factor NusA [Caldicellulosiruptor hydrothermalis 108] Length = 357 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 136/346 (39%), Positives = 211/346 (60%), Gaps = 8/346 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E I++D V SV+ ++ A + + G +++V I+PE G + Sbjct: 9 DFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +I Sbjct: 69 KIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE R + ++ KV I++G V+R++ NVIV++ G + ++ +E I E +P Sbjct: 129 KIREKRRSIIFEDYSSKVDNIVTGVVQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K YI +VR +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GVMMKFYITEVRIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIK 354 >gi|320108355|ref|YP_004183945.1| NusA antitermination factor [Terriglobus saanensis SP1PR4] gi|319926876|gb|ADV83951.1| NusA antitermination factor [Terriglobus saanensis SP1PR4] Length = 562 Score = 411 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 169/425 (39%), Positives = 248/425 (58%), Gaps = 12/425 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M SA L Q + ++ +K ID +V+ + D+I A R Y T ++R E + E+G+I Sbjct: 1 MASA----LYQAIELMSRDKGIDPQIVVGAVEDAIALATRKFYKTQENMRGEFDKESGEI 56 Query: 61 SLFRLLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + VVE +VE+ Q++L A++ +++G + GR+A Q AKQV Sbjct: 57 RAYVYKTVVEGAEQVEDAENQLTLDQAKELAGEVEVGAELRFYKDTSPLGRIAAQMAKQV 116 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 I QKVREAERD + E+ +VGEI++ TVKRVE +VIVDL ++ + + E E Sbjct: 117 IFQKVREAERDTVFNEYNHRVGEILNATVKRVEPMDVIVDLDKAEARMPKREQSRLEQFA 176 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R++ + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R Sbjct: 177 VGERIRVALIRVDRAAKGPQVIVSRAAPSLVQNLFQSEVPEIYDGTVMIRAIAREAGERT 236 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V Sbjct: 237 KIAVVSRDKDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEITTFAEKALQPAKVA 296 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +V + D +IEVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ + Sbjct: 297 RVSITDLAEKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMS 356 Query: 357 ERTQF----FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 Q + E + L+A G VE LA + E+ + G E++ +I Sbjct: 357 AMQGAPQTPIEQVTELGESVLEKLIAAGITTVESLADMTAEELEEVPGIGEKSVEKITVA 416 Query: 413 AREYL 417 R Y Sbjct: 417 VRHYF 421 >gi|291166364|gb|EFE28410.1| transcription termination factor NusA [Filifactor alocis ATCC 35896] Length = 412 Score = 411 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 140/387 (36%), Positives = 221/387 (57%), Gaps = 31/387 (8%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-------------------GTM 46 E + + EK I +D+++ + ++ KA + + Sbjct: 2 NAEFISAIQQLEDEKGISKDILIEAVEMALVKAYKKNFVEKNNYNDTLVEKDPKKLSLEK 61 Query: 47 SDIRVEINPETGDISLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104 ++++V I+ ETGDI +F EVV E++ +ISL+ A++ D + +G +V + + P Sbjct: 62 NNVQVSIDRETGDIKVFSKKEVVNKREIDLLEGEISLEGAQEIDINYKVGDIVQEEITPR 121 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVD 157 +FGR+A Q+A+QV+IQK+ EA RD Y EF ++ EI+ G V R+ N ++ + Sbjct: 122 NFGRIATQTARQVVIQKITEAGRDIIYNEFSNRESEIMIGEVVRIGKHNTCHLNLSLVSE 181 Query: 158 LGNS---DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G++ + + E I E G R+ YI +V++ PQ+L+SR+ P + +LF Sbjct: 182 KGHTIYGEATMISQEQIPYEEYSVGQRIIVYILEVKKHNNVPQILVSRSRPGLVKRLFER 241 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI +GIVQ+K+++R+ GSR KL+V S D S+D +GACVG +G RV +V EL EKI Sbjct: 242 EVPEISDGIVQIKSIAREAGSRTKLSVCSVDPSVDAIGACVGGKGIRVANIVEELHGEKI 301 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV + + ++ NAL P+ V V ++E+ +VIVP QLSLAIG+ GQN RLA++L Sbjct: 302 DIVNYDENPIEYISNALSPSKVVDVSVNEEEKTAKVIVPDYQLSLAIGKEGQNARLAAKL 361 Query: 335 TGWTIDIITEEEDSINRQKDFNERTQF 361 TGW IDI +E + D + +Q Sbjct: 362 TGWKIDIKSESQALQETMDDGDFSSQM 388 >gi|169350438|ref|ZP_02867376.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552] gi|169292758|gb|EDS74891.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552] Length = 432 Score = 411 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 151/374 (40%), Positives = 230/374 (61%), Gaps = 4/374 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRL 65 ++ ++ + + EK I++DV L ++ +SI KA + Y + +++RVEIN +TG LF L Sbjct: 4 IKFMEALNLLIEEKGIEKDVFLEMLKESIAKAYKKNYLNSDANVRVEINEKTGKFRLFEL 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+++E+ ++SL+ A+ +P IG VV GR+A KQ+ QK+RE Sbjct: 64 RTVVDDLEDEDLELSLEEAQAINPFYKIGDVVETEADVEHIGRLAAIQTKQLFRQKIRET 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EF DK +II+G V RVE IV++G + + ++ I E L+ G +K Y Sbjct: 124 EKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLALNQQIPGEKLKEGQHLKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV R +G +++SRT P F+ +LF +EVPE+++G V++KAVSR+PG R+K+AV++S+ Sbjct: 184 VCDVDRGTKGTHIVVSRTEPNFVKRLFELEVPEVFDGTVEIKAVSREPGERSKIAVYASN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E Sbjct: 244 ENIDPIGSCVGPKGSRVKNVVDELNGEMIDIIIWSNDPVEFISNALSPSEVKYVSINEKD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP +QLSLAIG+RGQN RLA +LTGW IDI + E + ++ Sbjct: 304 HSALVIVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEALE---NGLITLEELESKS 360 Query: 366 INVDEIIAHLLVAE 379 + VD E Sbjct: 361 VPVDASFEEQFAQE 374 >gi|72161180|ref|YP_288837.1| transcription elongation factor NusA [Thermobifida fusca YX] gi|71914912|gb|AAZ54814.1| transcription termination factor NusA [Thermobifida fusca YX] Length = 329 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 137/347 (39%), Positives = 203/347 (58%), Gaps = 24/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I D+V+ + D++ A R G ++ RVE++ TG ++++ Sbjct: 5 MSVLRSLEREKDISVDLVVKAIEDALLIAYRRQEGPDTNARVELDRATGHVTVWA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EE + I A P FGR+A +AKQVI+Q++R+AE + Sbjct: 60 EERDEEGRLIREYDA-----------------TPSGFGRIAASTAKQVILQRLRDAEDEI 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF + +I+SG V++ + NV+VDLG + ++ E + E G+R+++Y+ Sbjct: 103 TLGEFAGRESQIVSGVVQQGKDPRNVLVDLGRVEAILPPQEQVPTETYTHGERLRAYVVQ 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR RGP + LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + Sbjct: 163 VRRGHRGPSITLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVKSNKPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G GSRV+ V+ ELR EKIDIV +S D A FV NAL PA VT V VLD Sbjct: 223 NAKGACIGPLGSRVRNVMNELRGEKIDIVDYSDDPAQFVANALSPAQVTHVEVLDAAARV 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VIVP Q SLAIG+ GQN RLA++LTGW IDI ++ E + ++ Sbjct: 283 ARVIVPDYQQSLAIGKEGQNARLAARLTGWRIDIRSDTEMAEQHGEE 329 >gi|256544696|ref|ZP_05472068.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC 51170] gi|256399585|gb|EEU13190.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC 51170] Length = 415 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 141/421 (33%), Positives = 245/421 (58%), Gaps = 7/421 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKEFIIALEELEKTKNVDKRIILEALEKALVKSYQKNYDNNENVDVSIDDETGEIEVYSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV +IS A++ DP +D+G + + P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KNVVEEVNEPIAEISKTKAKEIDPKLDLGDICRVKIAPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ D+ EII+G V+R + N+ ++L +G+I E + E P R+K Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKFNIYINLDKIEGIIPLKEQVENETYTPNQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D Sbjct: 182 IKEVKNTTKEPQIILSRKDKALVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID +GAC+G +GSRV ++V EL+ EKIDI+ + D F+ N+L PA + +V +++ Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKVFIKNSLSPAEINEVYINDKK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q++ + + Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDQLSQEEID-------EI 354 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 + ++E L E++ + ++ D+E ++ + ++ Sbjct: 355 LGLNEQTDKDLENIEENSKEDILEDENAQQGENLDIDKENIEDLSNDLDQIIKEDIEESD 414 Query: 426 K 426 + Sbjct: 415 E 415 >gi|73748752|ref|YP_307991.1| transcription elongation factor NusA [Dehalococcoides sp. CBDB1] gi|147669518|ref|YP_001214336.1| transcription elongation factor NusA [Dehalococcoides sp. BAV1] gi|289432778|ref|YP_003462651.1| transcription termination factor NusA [Dehalococcoides sp. GT] gi|73660468|emb|CAI83075.1| N utilization substance protein A [Dehalococcoides sp. CBDB1] gi|146270466|gb|ABQ17458.1| NusA antitermination factor [Dehalococcoides sp. BAV1] gi|288946498|gb|ADC74195.1| transcription termination factor NusA [Dehalococcoides sp. GT] Length = 491 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 149/416 (35%), Positives = 240/416 (57%), Gaps = 4/416 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + + Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDQLTGKVKVMA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VVE+V + ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKQVVEKVIDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ K G+ + G V+R+E + VD+G + ++ +E E R G R+K Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPANEQAYGERYRAGQRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + Sbjct: 182 YVVDVAKTAKGPSVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 IDPVG CVG+RG R+Q +V+EL EKID+V WS + A+F+ N+L PA VTKV+L+E Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWSSEIASFIANSLSPAQVTKVILNEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R + R Q + Sbjct: 302 ERSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEDVER-AEVAARQQEEIS 360 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + E + A V + V + ++ + E A E +A E Sbjct: 361 KSKITEKVVEK--QPVIAAVSKTETVPVEKVLPADTIIEPVAKETPAKAESVPEEQ 414 >gi|315185930|gb|EFU19694.1| transcription termination factor NusA [Spirochaeta thermophila DSM 6578] Length = 488 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 149/439 (33%), Positives = 237/439 (53%), Gaps = 22/439 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + E+ I ++V + D + A + +GT + VE + + +++L+ + Sbjct: 4 DLKEAIQMLVQERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ E+ QI L AR P + G + + P F R AVQ AKQ Q+++E Sbjct: 64 VVADEDFEDEVLQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y EFKDKVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+ Sbjct: 124 QRDTLYSEFKDKVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IY+V + G QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S Sbjct: 184 IYEVNKTPSGLQVILSRTHTEFVRKILELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRK 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVG++G R+QA+V EL E++D++ + PD F+ N+L PA V +V++ D + Sbjct: 244 EGVDPVGACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-------------- 350 +V QLSLAIG++G NVRLA++L W ID+ T ++ Sbjct: 304 KKHALAVVKDNQLSLAIGKQGLNVRLANRLVDWNIDVKTAKQVEEMGIGKEAMEAVSAVF 363 Query: 351 -RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV-KISEIASIEGFDEE---T 405 + E + + I +L +G+ ++E+L + + + I EE Sbjct: 364 SDLDEQVEEITRIEELPGLPPHIVEILSRQGYEEIEDLVFAYQDNGLEHIPELTEEDRQL 423 Query: 406 AVEIQGRAREYLEGIDITL 424 +I A E +E + Sbjct: 424 IGKILEDAVEIVEEEETAQ 442 >gi|270308254|ref|YP_003330312.1| transcription elongation factor [Dehalococcoides sp. VS] gi|270154146|gb|ACZ61984.1| transcription elongation factor [Dehalococcoides sp. VS] Length = 487 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 143/391 (36%), Positives = 238/391 (60%), Gaps = 3/391 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I V+I+P TG + + Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDPLTGKVKVMA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VVE+V + ++ L A+ + IG ++ P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKQVVEKVIDSRQEMRLLEAKRQKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ K G+ + G V+R+E + VD+G + ++ E E R G R+K Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + Sbjct: 182 YVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 IDPVG CVG+RG R+Q +V+EL EKID+V W + ATF+ N+L PA VTKV+L+E Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDNEIATFIANSLSPAQVTKVILNEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ + ++ Sbjct: 302 EKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEEVARKQAEHIK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEI 395 V++ + V++ + E + + +E+ Sbjct: 362 PEAVEKQPVAVPVSK--IEEESVGKLPPAEL 390 >gi|126640415|ref|YP_001083399.1| transcription elongation factor NusA [Acinetobacter baumannii ATCC 17978] Length = 418 Score = 410 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 173/431 (40%), Positives = 252/431 (58%), Gaps = 25/431 (5%) Query: 86 DRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D DP IG V + ++FGR+A Q AKQVI+QK+REAER ++ KVGE+I G Sbjct: 10 DVDPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQKIREAERALVADAYESKVGELIYG 69 Query: 145 TVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 VK+ I+DLG N++ + R+E I +E LRP RV + +Y V RE RG Q+LLSR Sbjct: 70 EVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPKQRVNAILYSVNREGRGAQLLLSRA 129 Query: 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQ 263 P+ ++ L E+PEI I+++KA +R PG RAK+AV ++D IDPVGAC+GMRG+R+Q Sbjct: 130 KPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKIAVKTNDHRIDPVGACIGMRGTRIQ 189 Query: 264 AVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV-PKEQLSLAIG 322 AV EL E+ID+VVWS D A ++ +AL PA V+ +VLDED ++I +QL+ AIG Sbjct: 190 AVQQELNGERIDVVVWSDDPAQYIASALEPADVSGIVLDEDAKSADIIFATNDQLARAIG 249 Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 +GQNVRLAS LTG+ +D++ EEE +Q + + F+ ++++E +A LV GF Sbjct: 250 SQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQYLDMFVSRLDIEEDLAMALVEMGFT 309 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 +EE+A V IE D E +Q RA+E + Q+ I+E S +L ++ G Sbjct: 310 SLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAALTDALKQQENIQE--PSADLLNMEG 366 Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMI 502 + S+I +L GI T++DLA + DD+ G ++ +I Sbjct: 367 MTSEIAYSLAARGIITVDDLADQATDDISDIE-----------------GLGHEKAGQLI 409 Query: 503 IHARYKMGWIE 513 + AR W Sbjct: 410 MKARES--WFN 418 >gi|227544951|ref|ZP_03975000.1| transcription termination factor NusA [Lactobacillus reuteri CF48-3A] gi|300910018|ref|ZP_07127478.1| transcription termination factor NusA [Lactobacillus reuteri SD2112] gi|227185062|gb|EEI65133.1| transcription termination factor NusA [Lactobacillus reuteri CF48-3A] gi|300892666|gb|EFK86026.1| transcription termination factor NusA [Lactobacillus reuteri SD2112] Length = 395 Score = 410 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 27/377 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65 Query: 66 LEVVEEVE----NYTCQISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRP 178 Q++RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ Sbjct: 126 QRLREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + + A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKEPAKFIANALNPAEVLD 305 Query: 299 VVLDED-------------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V+ +E+ V+VP QLSLAIG+RGQN RLA++LT + I Sbjct: 306 VIFNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKI 365 Query: 340 DIITEEEDSINRQKDFN 356 DI +E E + N Q+ Sbjct: 366 DIKSESEMAENDQESEE 382 >gi|153873979|ref|ZP_02002372.1| Transcription termination factor NusA [Beggiatoa sp. PS] gi|152069556|gb|EDN67627.1| Transcription termination factor NusA [Beggiatoa sp. PS] Length = 355 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 162/355 (45%), Positives = 242/355 (68%), Gaps = 6/355 (1%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR 177 +QK+REAER + ++D+ GE+ISG VKRVE GNVI+DLG N++ +I RDE I RE++R Sbjct: 1 MQKIREAERAQIIEAYQDRQGELISGVVKRVERGNVILDLGGNAEALITRDEMIPRESVR 60 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDR++ Y+Y VR E RGPQ+ LSRT P+ ++KLF+MEVPEI +++ +RDPG RA Sbjct: 61 PGDRLRGYLYSVRPESRGPQIFLSRTAPELLIKLFNMEVPEIGEHFLEIVDAARDPGLRA 120 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV D IDPVGACVGMRGSRVQA+ EL E++DI+V+ + A FV+NA+ PA V Sbjct: 121 KIAVKPKDPRIDPVGACVGMRGSRVQAISNELAGERVDIIVFDENPAQFVMNAMAPADVV 180 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++DE+ ++V V +EQLS AIGR GQNVRLASQLT WT++++T+++ +++ Sbjct: 181 SIIVDEETHSMDVAVQEEQLSQAIGRNGQNVRLASQLTSWTLNVMTDKQAREKHEQEALV 240 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM + VDE IA++LV EGF+ +EE+A V ++E+ IE FDE E++ RA++ L Sbjct: 241 MLELFMDELEVDEEIANILVQEGFSSIEEVAYVPLTEMLQIEAFDENLVKELRSRAKDAL 300 Query: 418 EGIDITLQKKIRELGVSEELC--SI--PGIDSKIKVALG-ENGIKTMEDLAGCSV 467 I +++ + +SEE ++ ++ + + + + T E+L S+ Sbjct: 301 LTRAIATEEQDESILLSEEKLPQNMVADEMNEQFMQPVATTHKVITQENLNEQSI 355 >gi|307718805|ref|YP_003874337.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] gi|306532530|gb|ADN02064.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] Length = 488 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 149/439 (33%), Positives = 237/439 (53%), Gaps = 22/439 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + E+ I ++V + D + A + +GT + VE + + +++L+ + Sbjct: 4 DLKEAIQMLVQERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ E+ QI L AR P + G + + P F R AVQ AKQ Q+++E Sbjct: 64 VVADEDFEDEVLQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y EFKDKVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+ Sbjct: 124 QRDTLYSEFKDKVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IY+V + G QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S Sbjct: 184 IYEVNKTPSGLQVILSRTHTEFVRKVLELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRK 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVG++G R+QA+V EL E++D++ + PD F+ N+L PA V +V++ D + Sbjct: 244 EGVDPVGACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-------------- 350 +V QLSLAIG++G NVRLA++L W ID+ T ++ Sbjct: 304 KKHALAVVKDNQLSLAIGKQGLNVRLANRLVDWNIDVKTAKQVEEMGIGKEAMEAVSAVF 363 Query: 351 -RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV-KISEIASIEGFDEE---T 405 + E + + I +L +G+ ++E+L + + + I EE Sbjct: 364 SDLDEQVEEITRIEELPGLPPHIVEILSRQGYEEIEDLVFAYQDNGLEHIPELTEEDRQL 423 Query: 406 AVEIQGRAREYLEGIDITL 424 +I A E +E + Sbjct: 424 IGKILEDAVEIVEEEETAQ 442 >gi|312876952|ref|ZP_07736927.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796267|gb|EFR12621.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A] Length = 357 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 133/346 (38%), Positives = 210/346 (60%), Gaps = 8/346 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E I++D V SV+ ++ A + + G +++V I+PE G + Sbjct: 9 DFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +I Sbjct: 69 KIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE R + + K+ I++G ++R++ NVIV++ G + ++ +E I E +P Sbjct: 129 KIREKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K YI +V+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GTMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIK 354 >gi|225027047|ref|ZP_03716239.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353] gi|224955511|gb|EEG36720.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353] Length = 414 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 150/388 (38%), Positives = 236/388 (60%), Gaps = 18/388 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK I+++V++ + DS+ A +G + ++V ++ +TGDIS++ Sbjct: 3 ELIDALNQLQKEKHIEKEVIMQAIEDSLVAACNRDFGKNAIVKVNMDRDTGDISVYVEKT 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL A+ +IG VV+ + P +FGR+A Q A+ VI+QK++E ER Sbjct: 63 VVEEVEDPATEISLADAKMIRFHYEIGDVVNIEVTPKNFGRIAAQHARSVIVQKIKEEER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + F K +I++G V+R N+ V L +D V+ E + E +P DR+K YI Sbjct: 123 RVVFEHFAHKEKDIVTGVVQRYNGKNISVSLDDKTDAVLTEKEQVKGEVFKPTDRIKLYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GP++L+SRTHP+ + +LF EV E+Y+G V++K+++R+ GSR K+AV S+D Sbjct: 183 VEVKDTNKGPKILVSRTHPELVKRLFEKEVAEVYDGTVEIKSIAREAGSRTKIAVASNDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ G+RV A+V++LR EKIDI+ W+ D A + NAL P+ V V +DE+ Sbjct: 243 NVDPVGACVGINGARVNAIVSDLRGEKIDIIEWNDDPAVLIENALSPSNVVSVDVDEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Sbjct: 303 SARVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQAAE------------LAEEL 350 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE 394 + E L AE F + E Sbjct: 351 DFGEDFGDLDEAEDFD-----LEAPVEE 373 >gi|294101966|ref|YP_003553824.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261] gi|293616946|gb|ADE57100.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261] Length = 362 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 131/351 (37%), Positives = 222/351 (63%), Gaps = 3/351 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + E+ + +V+ S + ++ A + G ++ V I+ E+G++S++ + Sbjct: 6 DFVRALKQLTAERGLTSEVIASSLEAALISAYKKYQGGDRNVEVHIDLESGNVSIYEVRL 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV+N QISL + +++ V P +FGR+A Q+A+QVIIQK+++AE Sbjct: 66 VVDEVDNPDAQISLIDVQKLGFTDVEVNEYVRIEKNPENFGRIAAQTARQVIIQKLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSY 185 R + EF +VG++++G + + E V+V L ++ ++ ++E + E PG+R+K Y Sbjct: 126 RQIIFEEFSGRVGDLVNGIIFKSENDQVLVRLNDRTEAILPKEERVINEKYTPGERLKFY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + KL +EVPEI GI+++K++ R+ G+RAK+AV + D Sbjct: 186 LLDVRQTTRGPRIVVSRTHPGLLRKLLELEVPEIQEGIIEIKSIVREAGTRAKVAVQTLD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++DPVGACVG G+R++++ EL EKID+++WS D FV N+L PA + K+ + E Sbjct: 246 INVDPVGACVGNNGARIKSISQELSGEKIDVIIWSSDPLIFVRNSLSPAKIVKIEPILEQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + V +QLSLAIG+ GQNVRLA++LT W IDI E + + +D Sbjct: 306 DKAVTVYARPDQLSLAIGKAGQNVRLAARLTSWKIDIKALEPERMPTLQDI 356 >gi|222529041|ref|YP_002572923.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|222455888|gb|ACM60150.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725] Length = 357 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 134/346 (38%), Positives = 212/346 (61%), Gaps = 8/346 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E I++D V SV+ ++ A + + G +++V I+PE G + Sbjct: 9 DFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q +I Sbjct: 69 KIYEYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEIPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E +P Sbjct: 129 KIREKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K Y+ DV+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GTLMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIK 354 >gi|312622703|ref|YP_004024316.1| nusa antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203170|gb|ADQ46497.1| NusA antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 357 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 134/346 (38%), Positives = 212/346 (61%), Gaps = 8/346 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E I++D V SV+ ++ A + + G +++V I+PE G + Sbjct: 9 DFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q +I Sbjct: 69 KIYEYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E +P Sbjct: 129 KIREKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K Y+ DV+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GTLMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIK 354 >gi|312793236|ref|YP_004026159.1| nusa antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180376|gb|ADQ40546.1| NusA antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 357 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 137/346 (39%), Positives = 211/346 (60%), Gaps = 8/346 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E IDRD V SV+ ++ A + + G +++V I+PE G + Sbjct: 9 DFQELFSAIDELEREYKIDRDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +I Sbjct: 69 KIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE R + + K+ I++G ++R++ NVIV++ G + ++ +E IS E +P Sbjct: 129 KIREKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQISGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K YI DV+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GTMMKFYITDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIK 354 >gi|146297077|ref|YP_001180848.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410653|gb|ABP67657.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 356 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 216/348 (62%), Gaps = 8/348 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETG 58 + + EL D + E I+R+ + SV+ ++ A + + G +++V I+PE G Sbjct: 7 TTDFQELFSAIDELEREYKIEREYIYSVLESALLTAYKQVRGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 D+ +F +VVE V++ +IS++ AR D +G +V+ +P DF R A + +Q + Sbjct: 67 DVKIFEYKKVVENVKDKRNEISVEDARKIDKRYQVGDIVAIEVPISDFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE +R+ + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKKRNIIFEDYSAKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K Y+ DV+ +++ P V LSRTHP + +L EVPEI GI+++K ++R+ G Sbjct: 187 KPGTMMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKGIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKYLGSEKIDIVRWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V + L+ + V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 307 EVVHIDLNLVEKKAFVLVPNDQLSLAIGKGGQNARLAAKLTGWKIDIR 354 >gi|54026039|ref|YP_120281.1| transcription elongation factor NusA [Nocardia farcinica IFM 10152] gi|54017547|dbj|BAD58917.1| putative transcriptional termination/antitermination factor [Nocardia farcinica IFM 10152] Length = 342 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 132/349 (37%), Positives = 201/349 (57%), Gaps = 32/349 (9%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + A+ +K I + V+S + ++ A R G + RV+IN TG + + Sbjct: 2 NIEI-EALRAIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVM-- 58 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 AR+ D ++ D P FGR+A +A+QV++Q++R+A Sbjct: 59 ------------------ARELDADGNVISEWDD--TPEGFGRIAATTARQVVLQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLR 177 E ++ + EF G+I+ G V+R G V+V +G ++G+I E + E Sbjct: 99 ENEKSFGEFSTHEGDIVGGVVQRDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYE 158 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+K Y+ V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+ Sbjct: 159 HGDRIKCYVVGVSRGPRGPQITLSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRS 218 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ ++ D ATFV NAL P+ V Sbjct: 219 KIAVRSTVPGVNAKGACIGPMGQRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVV 278 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V ++D D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 279 SVTIVDPDARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 327 >gi|145593916|ref|YP_001158213.1| transcription elongation factor NusA [Salinispora tropica CNB-440] gi|145303253|gb|ABP53835.1| transcription termination factor NusA [Salinispora tropica CNB-440] Length = 347 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 137/346 (39%), Positives = 198/346 (57%), Gaps = 27/346 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ +TG +F Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVF------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ +P + D P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQEVEPDGGVVREWDD--TPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTA 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G G RV+AV+ EL EKIDI+ WS D A FV NAL PA +V V+D Sbjct: 223 AGVNAKGACIGPMGQRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEPARP 328 >gi|167751796|ref|ZP_02423923.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216] gi|167660037|gb|EDS04167.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216] Length = 410 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 140/418 (33%), Positives = 232/418 (55%), Gaps = 12/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L+ K+ID+ ++ V+ D + A + + T + V INPE GD+ ++R Sbjct: 2 DNLNLISNFAEFKELKNIDKATMIGVLEDVFRHALQKQFETDENFDVIINPEKGDLEIWR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ VEN QI++ + DP+ ++G DP+ FGR AV S +Q + ++ Sbjct: 62 NRTVVEDGAVENPNMQIAVSEVKAIDPTYEVGDEYVDPIKLESFGRRAVLSLRQNLASRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDR 181 + E+ Y ++ +KVGEII+G V +V V I+D ++ ++ + E I + R GD Sbjct: 122 LDLEKANLYEKYSEKVGEIITGEVYQVWKKEVLILDDEGNELILPKTEQIPNDYYRKGDT 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+AV Sbjct: 182 IKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITLKKIVRIPGERAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + AL PA ++ + + Sbjct: 242 ESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTTNPQLMIQRALNPAKISSITI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F + Sbjct: 302 DEEKKTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREIEEEDVALTEFAD---- 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D + L A G + + + + EIA+ + E A ++ + E Sbjct: 358 -----EIDGWVIDALKACGCDTAKSVLELPVEEIAARADLELEQAQKVVEILKAEFEE 410 >gi|29829095|ref|NP_823729.1| transcription elongation factor NusA [Streptomyces avermitilis MA-4680] gi|29606201|dbj|BAC70264.1| putative transcriptional termination/antitermination factor [Streptomyces avermitilis MA-4680] Length = 328 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 134/341 (39%), Positives = 197/341 (57%), Gaps = 21/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPEDLEEGQEAREFDD------------TPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGLRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQS 326 >gi|302558072|ref|ZP_07310414.1| transcription termination factor NusA [Streptomyces griseoflavus Tu4000] gi|302475690|gb|EFL38783.1| transcription termination factor NusA [Streptomyces griseoflavus Tu4000] Length = 332 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 131/347 (37%), Positives = 199/347 (57%), Gaps = 21/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I ++++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRLLVREKEISLELLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPEDLEEGQEAREFDD------------TPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V++V ++D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSRVDIVDMAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S ++ + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQSGDQAGE 332 >gi|46198657|ref|YP_004324.1| transcription elongation factor NusA [Thermus thermophilus HB27] gi|55980670|ref|YP_143967.1| transcription elongation factor NusA [Thermus thermophilus HB8] gi|1352608|sp|P48514|NUSA_THET8 RecName: Full=Transcription elongation protein nusA gi|642364|emb|CAA88036.1| NusA protein [Thermus thermophilus] gi|46196280|gb|AAS80697.1| N utilization substance protein A [Thermus thermophilus HB27] gi|55772083|dbj|BAD70524.1| N utilization substance protein A (NusA) [Thermus thermophilus HB8] Length = 387 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 213/351 (60%), Gaps = 11/351 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----------GTMSDIRVEINP 55 E ++ +A E+ + + +L ++++KA G ++ V I+P Sbjct: 2 NREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYIDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +G I + + VVE+VE+ +I+L A DP + +G + P+ P + R+A+Q + Sbjct: 62 NSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDLR 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + R E I E Sbjct: 122 QILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPRSEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K Y+ V + +GP +L+SR H + + L EVPEI GIV++KA++R+PG Sbjct: 182 KYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA Sbjct: 242 RRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I E Sbjct: 302 QVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAE 352 >gi|302554522|ref|ZP_07306864.1| transcription termination factor NusA [Streptomyces viridochromogenes DSM 40736] gi|302472140|gb|EFL35233.1| transcription termination factor NusA [Streptomyces viridochromogenes DSM 40736] Length = 340 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 132/352 (37%), Positives = 200/352 (56%), Gaps = 21/352 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPDDLEEGQEAREFDD------------TPTGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYGHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV ++D Sbjct: 226 NAKGACIGPVGGRVRNVMGELNGEKIDIVDWSEDPAEMVANALSPARVSKVEIVDMATRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + + + + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAGEQSGERSGQR 337 >gi|89898348|ref|YP_515458.1| transcription elongation factor NusA [Chlamydophila felis Fe/C-56] gi|89331720|dbj|BAE81313.1| N utilization protein A [Chlamydophila felis Fe/C-56] Length = 434 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 149/424 (35%), Positives = 240/424 (56%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR G N+++DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLVIDLGKVEGLLPARYYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +LF EVPE+ +G V++ ++R+ G R KLAV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEDGSVEIIKIAREAGYRTKLAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 TDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I ++V + IG+RG N RL SQ+ + +++ E + + N Sbjct: 302 DDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDN 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + + +++ LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|315652148|ref|ZP_07905146.1| transcription termination factor NusA [Eubacterium saburreum DSM 3986] gi|315485640|gb|EFU76024.1| transcription termination factor NusA [Eubacterium saburreum DSM 3986] Length = 386 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 152/373 (40%), Positives = 233/373 (62%), Gaps = 8/373 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV------E 73 K+I + +L + +S+ A ++ +GT +++V +NP T D S+ + EVVE + E Sbjct: 16 KNISKAAILEAIENSLISACKNSFGTADNVKVSVNPTTCDYSIIQAKEVVESLGNKPSLE 75 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + + Sbjct: 76 DRATKISLAEARMQNPNLGVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + K +I+SG V R N+ ++LG D V+ E + E+L+ GDR+K ++ +V+ Sbjct: 136 YYMKERDIVSGVVTRFMGKNIAINLGKIDAVLAESEQVKGEDLKLGDRLKVFVLEVKDNP 195 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++ +SRTHP+F+ +LF +VPEI +G+V++K+++R+ GSR K+AV S + IDPVGA Sbjct: 196 KGPRISVSRTHPEFVKRLFEAQVPEIRDGVVEIKSIAREAGSRTKIAVCSHEPDIDPVGA 255 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVG+ G RV AVV ELRDEK+DIV W + A + NAL PA V VV DE+ +VIVP Sbjct: 256 CVGVDGVRVNAVVEELRDEKVDIVNWDDNPAYLIENALSPAKVIAVVADEETKEADVIVP 315 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 QLSLAIG+ GQN RLA++LTG+ IDI +E + D + ++ + +E A Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQARELGVFDSLDGSENMSANTDNNED-A 374 Query: 374 HLLVAEGFADVEE 386 G D+EE Sbjct: 375 EAEKENG-NDIEE 386 >gi|331002483|ref|ZP_08326001.1| transcription termination factor NusA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410299|gb|EGG89733.1| transcription termination factor NusA [Lachnospiraceae oral taxon 107 str. F0167] Length = 395 Score = 408 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 150/358 (41%), Positives = 227/358 (63%), Gaps = 6/358 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV------E 73 K+I + +L + +S+ A ++ +GT +++V +NP+T D S+ + EVVE + E Sbjct: 16 KNISKAAILEAIENSLISACKNNFGTADNVKVSVNPDTCDYSIIQAKEVVETLGNKPTIE 75 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + + Sbjct: 76 DKATKISLAEARMKNPNLSVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + K +I+SG V R N+ ++LG D V+ E + E L+ GDR+K ++ +V+ Sbjct: 136 YYMKERDIVSGAVTRFMGKNIAINLGRIDAVLAESEQVKSEELKLGDRLKVFVLEVKDNP 195 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++ +SRTHP+F+ +LF EVPEI +G+V++K++SR+ GSR K+AVFS ++ IDPVGA Sbjct: 196 KGPRISVSRTHPEFVKRLFESEVPEIRDGVVEIKSISREAGSRTKIAVFSHEADIDPVGA 255 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVG+ G RV AVV ELR EK+DIV W + + NAL PA V VV DE+ +VIVP Sbjct: 256 CVGVDGVRVNAVVEELRGEKVDIVNWDDNPGYLIENALSPAKVIAVVADEETKEADVIVP 315 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 QLSLAIG+ GQN RLA++LTG+ IDI +E + D + + + VDE Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQARELGVFDSLDGSDDISDDMPVDEE 373 >gi|57234284|ref|YP_181708.1| transcription elongation factor NusA [Dehalococcoides ethenogenes 195] gi|57224732|gb|AAW39789.1| N utilization substance protein A [Dehalococcoides ethenogenes 195] Length = 491 Score = 408 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 140/369 (37%), Positives = 223/369 (60%), Gaps = 2/369 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + + Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVMA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+V + ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKLVVEKVTDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ K G+ + G V+R+E + VD+G + ++ E E R G R+K Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + Sbjct: 182 YVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 IDPVG CVG+RG R+Q +V+EL EKID+V W + A F+ N+L PA VTKV+L+E Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILNEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ R Q + Sbjct: 302 EKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEETA-RKQGETE 360 Query: 365 AINVDEIIA 373 + E + Sbjct: 361 KPAITEKVI 369 >gi|290957021|ref|YP_003488203.1| transcriptional termination/antitermination factor [Streptomyces scabiei 87.22] gi|260646547|emb|CBG69644.1| putative transcriptional termination/antitermination factor [Streptomyces scabiei 87.22] Length = 328 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 134/339 (39%), Positives = 196/339 (57%), Gaps = 21/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIEAALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR D P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPEDLEEGQEARAFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPSLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|291513589|emb|CBK62799.1| transcription termination factor NusA [Alistipes shahii WAL 8301] Length = 409 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 139/417 (33%), Positives = 232/417 (55%), Gaps = 12/417 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L+ K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++R Sbjct: 2 DNLNLISNFAEFKELKNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIWR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ VE+ QIS+ + DP+ +IG +D + FGR AV S +Q + ++ Sbjct: 62 NRTVVEDDAVEDPNAQISVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDR 181 + E+ Y ++ +KVG+I++G V +V V I+D ++ ++ + E I + R GD Sbjct: 122 LDLEKASLYEKYSEKVGDIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGDT 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+AV Sbjct: 182 IKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + +L PA V+ + + Sbjct: 242 ESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTANPTLMIQRSLNPAKVSSITI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F + Sbjct: 302 DEEKMTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREVEEEDVALTEFAD---- 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D + L A G + + + + EIA+ + E A ++ + E Sbjct: 358 -----EIDGWVIDALKAAGCDTAKSVLELPVEEIAARADLELEQAQKVVEILKAEFE 409 >gi|294055327|ref|YP_003548985.1| transcription termination factor NusA [Coraliomargarita akajimensis DSM 45221] gi|293614660|gb|ADE54815.1| transcription termination factor NusA [Coraliomargarita akajimensis DSM 45221] Length = 416 Score = 407 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK IDR +++ ++ +I AA+ DIRVEINP TG + + LE Sbjct: 4 EILSVLEYMEKEKGIDRADMITAISAAIASAAQKGVSAGQDIRVEINPRTGALKAWSRLE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +I ++ AR DP +IG V+ + P GR+A Q+A+Q I+Q++R+ E+ Sbjct: 64 VVDSVSDQALEIHIEKARQIDPDAEIGQVIEKEMDPAYLGRIAAQTARQAIMQRIRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DR Y +FKD VG+I++GTV+R E G++I+DLG ++ ++ E + E+ GD ++ + Sbjct: 124 DRIYDDFKDTVGDIVTGTVRRRERGDLIIDLGKAEAILPPRERVPGEDYSIGDSIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + + RGP ++LSR++ F+ +LF +EV EI +G V ++A++R+ G R K+AV S+D Sbjct: 184 KIEQTNRGPDIILSRSNLNFVRRLFELEVTEIADGTVTIEAMAREAGYRTKIAVHSADPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+ +V EL EKIDI+ D + ALRPA+ V L++ R Sbjct: 244 VDPVGACVGARGARVKTIVRELGGEKIDIIRHFTDPVQMLEEALRPAVPKNVRLNDVERR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + V ++ LS+AIGRRG N +L S+L GW +DI EE+++I + + Q Sbjct: 304 MHFEVAEDDLSIAIGRRGFNAKLTSRLLGWKLDIGKEEKEAIGFDEKIAKAIQGITVIPG 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ IA LV G E V +++ GF A +I + Y + Sbjct: 364 IEPAIAQRLVGIGLISPEAFEGVAANDLVDA-GFTAAEADDIISKVAAYAQSNA 416 >gi|325126000|gb|ADY85330.1| Transcription termination-antitermination factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 468 Score = 407 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 140/377 (37%), Positives = 222/377 (58%), Gaps = 8/377 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 64 SKEMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMAL 123 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REA Sbjct: 124 KTVVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREA 183 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKS 184 E E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ Sbjct: 184 ENAHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRV 243 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+ Sbjct: 244 LVTKVGADGKGAQIRVSRTPPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSN 303 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V + Sbjct: 304 DPNIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDE 363 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +D + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 364 DDERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVA 423 Query: 363 MQAINVDEIIAHLLVAE 379 D+ + V E Sbjct: 424 E-----DQDLQQAAVEE 435 >gi|329936656|ref|ZP_08286363.1| transcriptional termination/antitermination factor [Streptomyces griseoaurantiacus M045] gi|329303886|gb|EGG47769.1| transcriptional termination/antitermination factor [Streptomyces griseoaurantiacus M045] Length = 330 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 199/345 (57%), Gaps = 21/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ ++G ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTDGSRRHARVELDRDSGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E+ + G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYQHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+ V V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSAVDVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + R Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAEPRD 330 >gi|313158663|gb|EFR58052.1| transcription termination factor NusA [Alistipes sp. HGB5] Length = 410 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 139/418 (33%), Positives = 233/418 (55%), Gaps = 12/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L+ K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++R Sbjct: 2 DNLNLISNFAEFKELKNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIWR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ VE+ QI++ + DP+ +IG +D + FGR AV S +Q + ++ Sbjct: 62 NRTVVEDGAVEDPNAQIAVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDR 181 + E+ Y ++ +KVGEI++G V +V V I+D ++ ++ + E I + R GD Sbjct: 122 LDLEKASLYEKYSEKVGEIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGDT 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+AV Sbjct: 182 IKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + + AL PA ++ + + Sbjct: 242 ESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTANPSLMIQRALNPAKISSITI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F + Sbjct: 302 DEEKMTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREVEEEDVALTEFAD---- 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D I L + G + + + + EIA+ + E A ++ + E Sbjct: 358 -----EIDGWIIDALKSVGCDSAKSVLELPVEEIAARADLELEQAQKVVAILKAEFEE 410 >gi|329942818|ref|ZP_08291597.1| transcription termination factor NusA [Chlamydophila psittaci Cal10] gi|332287410|ref|YP_004422311.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC] gi|313847990|emb|CBY16987.1| N utilization substance protein A [Chlamydophila psittaci RD1] gi|325507005|gb|ADZ18643.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC] gi|328815078|gb|EGF85067.1| transcription termination factor NusA [Chlamydophila psittaci Cal10] gi|328914659|gb|AEB55492.1| N utilization substance protein A [Chlamydophila psittaci 6BC] Length = 434 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 149/424 (35%), Positives = 241/424 (56%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR G N+I+DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I ++V + IG+RG N RL SQ+ + +++ E + + + Sbjct: 302 DDKVIAIVVQDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + +++ LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|189485237|ref|YP_001956178.1| transcription antitermination factor NusA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287196|dbj|BAG13717.1| transcription antitermination factor NusA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 418 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 142/389 (36%), Positives = 238/389 (61%), Gaps = 1/389 (0%) Query: 30 VMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDP 89 V+ +++ A + G ++ ++NPE G+++ + VV++V N +I ++ A+ D Sbjct: 28 VIENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKVVVKDVVNPLLEICVQDAKKFDQ 87 Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 S++IG V PL DF R+A Q+AKQVI+QK+RE+ERD + E K+K+G+I +G + R+ Sbjct: 88 SVEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESERDSLFDEMKEKIGQIANGAIYRI 147 Query: 150 EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209 N+IVDLG ++ ++ E + +E G +K+ I V + +G V+LSRT + + Sbjct: 148 TNRNLIVDLGKTEAILPSSEQVFKEKFSVGQYIKAVIIKVEKSVKGSGVVLSRTSIELVK 207 Query: 210 KLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 +LF +EVPEIY IV++ V R+PG R K+ V S + +DPVGACVG++G+RV+ ++ EL Sbjct: 208 RLFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNPKVDPVGACVGVKGARVKPIIDEL 267 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 R E+ID+V +S D A ++ +A+ PA + V + E+ + EV+V + L LAIG+ G NV Sbjct: 268 RGERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEEKKAEVLVTDDMLFLAIGKNGHNV 327 Query: 329 RLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 RLA++LTGW ID+ +E + + ++ + F + E I +LV G DVE+L+ Sbjct: 328 RLAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKLEGFSERIIKMLVKAGITDVEKLS 387 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYL 417 + + ++ G +TA +I A+ + Sbjct: 388 LLTTEYLITLPGIGHKTAEKIIEVAKNSI 416 >gi|325110092|ref|YP_004271160.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324970360|gb|ADY61138.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 496 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 150/422 (35%), Positives = 242/422 (57%), Gaps = 38/422 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L+I DA+ +K ID+++V + +I A R YG ++ V I+ +G Sbjct: 2 NASEVLRIVDAIHRDKGIDKEIVFEGIEQAILTALRKYYGDEDELIVLIDRNSG------ 55 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 PS+ G L P GR+A Q+AKQV+IQK+RE Sbjct: 56 -----------------------APSVQHNGEY---LDPDILGRIAAQTAKQVMIQKIRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD Y EF ++ ++++GTV R+E+G V++G + ++ R E I E+ R +R+++ Sbjct: 90 AERDALYDEFIEQKSQLLTGTVTRLEHGVATVNIGKVEAILPRSEQIPGESHRVNERIRA 149 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DVR+ +++LSR HP F+ +LF +E+PEI +++V++++R+ G R K+AV Sbjct: 150 VITDVRKAGSRIKIVLSRVHPDFVRRLFEVEIPEIAENVIEVRSLAREAGYRTKIAVSCY 209 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+SID VGACVG+RG+R++ +V EL E+IDIV W+ + NAL+PA V V+L Sbjct: 210 DNSIDAVGACVGVRGARIRNIVDELSGERIDIVRWNDSLQILIPNALQPAEVEDVILCPM 269 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +GR+ V+V +QLSLAIG++GQNVRLAS+L GW I+++T +E + F + Sbjct: 270 LGRVIVLVRDDQLSLAIGKKGQNVRLASKLVGWDIEVMTRDE----LDEQLERSVIAFSE 325 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 V E +A LV++GF ++L+ ++ + + G +E EI A E + + Sbjct: 326 VPLVTEDLAESLVSQGFFSFDDLSVIEPEHLVELSGLTDEQCDEIIEHADA--ESLRLEQ 383 Query: 425 QK 426 ++ Sbjct: 384 EE 385 >gi|268316867|ref|YP_003290586.1| NusA antitermination factor [Rhodothermus marinus DSM 4252] gi|262334401|gb|ACY48198.1| NusA antitermination factor [Rhodothermus marinus DSM 4252] Length = 421 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 148/406 (36%), Positives = 233/406 (57%), Gaps = 12/406 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ +A+ K IDRD + ++ D + R YG+ + NP+ GDI + + Sbjct: 3 NSELVSSFAEIAHSKGIDRDTLQLIVEDVFRAMIRKRYGSDEAFEIIFNPDHGDIQILHI 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV E+E+ QI L AR DP ++G V+ + +FGR A+ +A+Q Q++R Sbjct: 63 REVVPDWELEDPVTQIELSEARKIDPDFEVGDEVASEVNIAEFGRRAIMTARQTFSQRIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + E+++ Y E+ + +GEI+ G + ++ V+V ++ ++ R+E I R+ R GD ++ Sbjct: 123 DLEKEKIYQEYSELIGEIVVGEIYQIRRREVLVMHNRTELILPREEQIPRDRYRKGDTLR 182 Query: 184 SYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + +VRRE G PQV++SR P F+ +L +EVPEI GIV+VK + R+PG RAK+AV Sbjct: 183 AIVKEVRREAGGAPQVIISRADPVFLERLLELEVPEIEEGIVEVKKIVREPGERAKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DPVGACVG+RG+R+ A+V EL +E ID++ WS D + AL PA V L+ Sbjct: 243 SHDERVDPVGACVGLRGNRIHAIVRELSNENIDVIEWSDDPRELIKRALTPARPLSVTLN 302 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 E+ R +V+V +++S AIGR G N+RLAS+LTG+ +D+ E R + + + Sbjct: 303 EEANPPRAKVVVRADEVSQAIGRGGVNIRLASRLTGYELDVYRE-----IRPDEEDIEIE 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 F + DE I L G + + + E+ G D ETA Sbjct: 358 EFADEL--DEEIIARLREIGCDTARAVLDLSVEELMRRSGLDAETA 401 >gi|218296560|ref|ZP_03497288.1| NusA antitermination factor [Thermus aquaticus Y51MC23] gi|218243102|gb|EED09634.1| NusA antitermination factor [Thermus aquaticus Y51MC23] Length = 385 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 143/382 (37%), Positives = 221/382 (57%), Gaps = 12/382 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----------YGTMSDIRVEINP 55 E ++ +A E+ + + VL ++++KA G ++ V I+P Sbjct: 2 NREFIEALQQLALERGVSAEEVLEAFKEALRKAYIKRQKGYKKEEVEEGKGPEVDVYIDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +TG I + + VVE+VE+ +ISL A DP + +G + P+ P RVA+Q + Sbjct: 62 QTGRIEMVEVRRVVEKVEDPDKEISLAEALQYDPEVQLGDEMEFPIDPEGLSRVAIQDLR 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++E+ER+R + E+KDK G++++G V RV+ GNV VDLG + + + E I E Sbjct: 122 QLLTQRLKESERNRIFNEYKDKEGQVLTGVVTRVDNRGNVFVDLGRGEAYLPKSEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K+Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+PG Sbjct: 182 RYYPGQRLKAYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA Sbjct: 242 RRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I E E S + Sbjct: 302 QVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIH-FEEAEISDLDEAI 360 Query: 355 FNERTQFFMQAINVDEIIAHLL 376 + + E L Sbjct: 361 RRAAQEEAEEKTRAKEEFEKLF 382 >gi|29840227|ref|NP_829333.1| transcription elongation factor NusA [Chlamydophila caviae GPIC] gi|29834575|gb|AAP05211.1| N utilization substance protein A [Chlamydophila caviae GPIC] Length = 434 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 150/424 (35%), Positives = 238/424 (56%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR G N+I+DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R KLAV S Sbjct: 182 LLQEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGFVEIVKIAREAGYRTKLAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I ++V + IG+RG N RL SQ+ + +++ E + + N Sbjct: 302 DDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDN 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + + +++ LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|239928612|ref|ZP_04685565.1| transcription elongation factor NusA [Streptomyces ghanaensis ATCC 14672] gi|291436937|ref|ZP_06576327.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672] gi|291339832|gb|EFE66788.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672] Length = 328 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 132/341 (38%), Positives = 198/341 (58%), Gaps = 21/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E+ G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQA 326 >gi|297748226|gb|ADI50772.1| N utilization substance protein A [Chlamydia trachomatis D-EC] gi|297749106|gb|ADI51784.1| N utilization substance protein A [Chlamydia trachomatis D-LC] Length = 465 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 147/424 (34%), Positives = 236/424 (55%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 33 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 92 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 93 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 152 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 153 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 212 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 213 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 272 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 273 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 332 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + Sbjct: 333 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 392 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 R ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 393 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 452 Query: 417 LEGI 420 EG Sbjct: 453 GEGK 456 >gi|295112228|emb|CBL28978.1| NusA antitermination factor [Synergistetes bacterium SGP1] Length = 364 Score = 405 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 135/365 (36%), Positives = 221/365 (60%), Gaps = 9/365 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + +Q + +A E+++ ++++S + ++ A + + V +N ETGDI + L Sbjct: 6 DFVQALNQIAEERNLAPELIVSSLEAALISAYKKYQSGDQRVEVHVNTETGDILVEELRT 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I+L A+ +G + P FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVEELESPDTEITLGDAKRLGFADASVGDELHLEKDPGHFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R Y EF DKVGE+++GT+ + E V+ +G ++ ++ R E I E PG +K Y Sbjct: 126 RQVIYSEFSDKVGEMMTGTIVKAENDQVLARIGERTEAILPRKERIPGEEYVPGQTMKFY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + KL +E+PE+ +G+++++ + R+ G RAK+++ + D Sbjct: 186 VLDVRQMTRGPKIVISRTHPGLLRKLMELEIPEVRDGVIEIRNIVREGGGRAKVSLSTMD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++DPVGACVG G+R++A+ EL EK+DI+VWS D ++ NAL PA V KV + + Sbjct: 246 QNVDPVGACVGAGGARIKAISQELMGEKVDIIVWSSDPLAYIRNALSPAQVVKVEPVLDQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + V EQLSLAIG+ GQNVRLA++LTGW IDI + + + F + Sbjct: 306 EHAAKAYVEPEQLSLAIGKAGQNVRLAARLTGWKIDI------NALQAERMPTLQDIFHE 359 Query: 365 AINVD 369 D Sbjct: 360 VAEAD 364 >gi|294631732|ref|ZP_06710292.1| transcription termination factor NusA [Streptomyces sp. e14] gi|292835065|gb|EFF93414.1| transcription termination factor NusA [Streptomyces sp. e14] Length = 328 Score = 405 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 132/341 (38%), Positives = 195/341 (57%), Gaps = 21/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ + P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQAPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVHKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQA 326 >gi|291296311|ref|YP_003507709.1| NusA antitermination factor [Meiothermus ruber DSM 1279] gi|290471270|gb|ADD28689.1| NusA antitermination factor [Meiothermus ruber DSM 1279] Length = 392 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 142/355 (40%), Positives = 223/355 (62%), Gaps = 14/355 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTMSDIRVEINP 55 + + VA+E+ + + ++S ++++ A G I V ++P Sbjct: 2 NKDFVDALSQVAHERGVTAEELISNFEEALRLAYLRQKGFRPKDVEEEGKGPIIEVHLDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 + G + + + VVEEV++ +I L+ A+ DP +++G + P+ P +F R+AVQ AK Sbjct: 62 QEGHLEVLEIRRVVEEVKDPDKEIDLETAKKYDPEVEVGEEMEFPVDPEEFSRIAVQIAK 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 QV+ Q+++EAER R + E+KDK GE+++G+V RV+ GNV V+LG + ++ + E I E Sbjct: 122 QVLTQRLKEAERTRVHNEYKDKEGEVVTGSVARVDNRGNVYVELGRGEALMPQKEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K Y+ V+R +GP +++SR H + + L EVPEI GIV+VKAV+R+PG Sbjct: 182 RYHPGQRIKVYLKQVQRSSKGPSLVVSRAHEELLRYLLRQEVPEIAEGIVEVKAVAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV S + ++DP+GAC+G +G R+QAV EL E+IDI+ WSP+ F+ NAL PA Sbjct: 242 SRSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGRERIDIIQWSPNPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V ++ ++ R V+V K+Q SLAIG+ GQNVRLAS+LTG+ I+ EE Sbjct: 302 TVGEITIENSENGQNRASVVVAKDQHSLAIGKAGQNVRLASKLTGYEINFEEAEE 356 >gi|218670845|ref|ZP_03520516.1| transcription elongation factor NusA [Rhizobium etli GR56] Length = 276 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 199/275 (72%), Positives = 235/275 (85%) Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 +IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI Sbjct: 1 IIRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGI 60 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 +QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D Sbjct: 61 IQVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDP 120 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+T Sbjct: 121 ATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMT 180 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E E+S RQK+FNERT FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDE Sbjct: 181 EAEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDE 240 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC 438 ETA EIQ RARE+LE ++ + +K + LGV +EL Sbjct: 241 ETAQEIQQRAREFLERLEAEMDEKRKALGVEDELR 275 >gi|332881709|ref|ZP_08449357.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680348|gb|EGJ53297.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 420 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 234/413 (56%), Gaps = 10/413 (2%) Query: 4 ANRLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D A K+IDR ++SV+ +S + L+G+ + V +NP+ GD Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV EV++ +ISL AR D ++G VS+ + FGR A+ + +Q + Sbjct: 62 EIYRNRTVVADGEVKDDNREISLTEARRIDEDYEVGEEVSENVDFAKFGRRAILTLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLR 177 K+ E E D Y ++KD+VGEI+S V ++ ++ VD ++ ++ + E I + R Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPAAVN 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E E + D Sbjct: 302 SVRIHEEEHKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFREIEGAEGEGDDI-- 359 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F+ ++D+ I L + G +++ + S +EET E+ Sbjct: 360 YLDEFVG--DIDQWIIDALKSIGMETAKDVLNAPREMLVSRADLEEETVDEVL 410 >gi|330718231|ref|ZP_08312831.1| transcription elongation factor NusA [Leuconostoc fallax KCTC 3537] Length = 375 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 218/353 (61%), Gaps = 5/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64 EL+ DA+ E+ IDR +V+ + ++ A + + T S++ V N G I++ + Sbjct: 2 SKELVDALDALENERGIDRQIVVDALELALAAAYKKQFNATQSNVDVTFNDRNGSITIKQ 61 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + VV E+ E+ +I L A + + + G + + P +FGR+A Q+AKQVI+QK+ Sbjct: 62 IKTVVLDEDFEDEVIEIPLSEALAINRAYEAGDEIRFDVTPKNFGRIAAQTAKQVIMQKL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181 REA R+ Y +F + EII+G V+R + + V L GN + V+ +++ + E+ R DR Sbjct: 122 REAGREAIYKKFSEYQDEIITGEVERQDARFLYVMLPGNQEAVMAQNDQMPNEHYRMHDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K + V +GPQ+ +SR + +LF EVPE+Y+G V++ +++R+ G R+K+AV Sbjct: 182 IKVLVSKVENSPKGPQIFVSRAAEDLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ DS +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ Sbjct: 242 YTHDSDLDPVGALVGQRGTRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVVDVIF 301 Query: 302 D-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 D E+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + K Sbjct: 302 DPENNHAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAADFLAK 354 >gi|256396850|ref|YP_003118414.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928] gi|256363076|gb|ACU76573.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928] Length = 324 Score = 405 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 132/337 (39%), Positives = 204/337 (60%), Gaps = 25/337 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + ++ I + ++ + ++ A + G + RV+++ +G ++++ VE+ Sbjct: 7 ALRDLEKDRGIPFEKLVEDIEAALLIAYKRTDGAKTRARVQVDRSSGHVTVWA----VED 62 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 +E+ + R+ D P +FGR+A +AKQVI+Q++R+ E ++ + Sbjct: 63 IEDGST-------REYDD------------TPSEFGRIASTTAKQVILQRLRDHEDEQTF 103 Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 EF + G++I+G V++ + V+V++G +G + E + E R G+R+K Y+ DVR Sbjct: 104 GEFSGRKGDLITGVVQQGRDPRAVLVNIGKIEGTLPAAEQVPGEEYRHGERLKCYVVDVR 163 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R QRGPQV LSRTHP + KLF +EVPEI G V++ A++R+ G R K+AV S + ++ Sbjct: 164 RGQRGPQVTLSRTHPDLVRKLFALEVPEIAEGAVEITAIAREAGHRTKIAVRSHRAGVNA 223 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D D Sbjct: 224 KGACIGPMGARVRNVMAELHGEKIDIVDWSEDPAEMVGNALSPARVSKVQVVDLDQRSAR 283 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 284 VIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAE 320 >gi|312865489|ref|ZP_07725716.1| transcription termination factor NusA [Streptococcus downei F0415] gi|311099007|gb|EFQ57224.1| transcription termination factor NusA [Streptococcus downei F0415] Length = 429 Score = 405 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 131/360 (36%), Positives = 209/360 (58%), Gaps = 15/360 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID++ ++ + +S++ A + YG VE N +TGD ++ + Sbjct: 2 SKEMLEAFRVLEEEKHIDKNDIIDAVTESLKSAYKRRYGQSDSCEVEFNEKTGDFQVYSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLADALKISSAYELGDKIRFEESVKEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 MREITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSIEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPRGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ VV++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKVVSKFHPVRLDPKSGLAVPVEENIDVIQWEEDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE+ V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDYVIFDDENSKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSATEYETM 361 >gi|302872115|ref|YP_003840751.1| transcription termination factor NusA [Caldicellulosiruptor obsidiansis OB47] gi|302574974|gb|ADL42765.1| transcription termination factor NusA [Caldicellulosiruptor obsidiansis OB47] Length = 356 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 133/346 (38%), Positives = 209/346 (60%), Gaps = 8/346 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E I+RD + SV+ ++ A + + G +++V I PE G + Sbjct: 9 DFQELFSAIDELEREYKIERDYIYSVLESALLTAYKQVKGIKDKNLSNVKVSIEPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +ISL+ A+ D +G +V +P F R A + +Q +I Sbjct: 69 KIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVVIEVPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE + + ++ KV I++G ++R++ NVIV++ G + ++ +E I E +P Sbjct: 129 KIREKRKSIIFEDYSSKVDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K YI +V+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GVMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIK 354 >gi|322373936|ref|ZP_08048471.1| transcription termination factor NusA [Streptococcus sp. C150] gi|321277308|gb|EFX54378.1| transcription termination factor NusA [Streptococcus sp. C150] Length = 396 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 129/355 (36%), Positives = 207/355 (58%), Gaps = 15/355 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I++D ++ + +S++ A + YG VE N +TGD ++ + Sbjct: 2 SKEMLEAFRVLEEEKHINKDDIIEAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y Sbjct: 122 MREITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 PA V V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + Sbjct: 302 APAEVDYVLFDENDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSAT 356 >gi|302537260|ref|ZP_07289602.1| transcription termination factor NusA [Streptomyces sp. C] gi|302446155|gb|EFL17971.1| transcription termination factor NusA [Streptomyces sp. C] Length = 333 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 131/339 (38%), Positives = 195/339 (57%), Gaps = 21/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV ++ G + ++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSFRRARVVLDRTNGHVVVWAT---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPR---DLEEGQEPK---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDL 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + G++I+G V++ + NV+VD+G + ++ E + E G R+K+Y+ Sbjct: 106 TFGEFAGREGDVITGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLKTYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D D Sbjct: 226 NPKGACIGPMGARVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDWDTRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|212696551|ref|ZP_03304679.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM 7454] gi|212676487|gb|EEB36094.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM 7454] Length = 410 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 145/406 (35%), Positives = 240/406 (59%), Gaps = 4/406 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKEFIIALEELEKSKNVDKKIILEALEKALVKSYQKNYENNENVDVNIDDETGEIEVYSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +IS AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A Sbjct: 62 KNVVDEVNDPIAEISKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ D+ EII+G V+R + NV ++L +G+I E + E R+K Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D Sbjct: 182 IKDVKNTTKEPQIILSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID +GAC+G +GSRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++ Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q++ +E + Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDKLDQEEIDEILGLNEEE 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + E I + VE+ + IE E+ I+ Sbjct: 362 DEIVENI-DGEIENSLDQVEDETDFIEDD---IENLSEDLDQIIKE 403 >gi|297202732|ref|ZP_06920129.1| transcription termination factor NusA [Streptomyces sviceus ATCC 29083] gi|297148179|gb|EFH28866.1| transcription termination factor NusA [Streptomyces sviceus ATCC 29083] Length = 328 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 130/341 (38%), Positives = 196/341 (57%), Gaps = 21/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV+++ ++G + ++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSHRHARVKLDRDSGHVVVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I+ G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVMGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VARGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQA 326 >gi|62185081|ref|YP_219866.1| transcription elongation factor NusA [Chlamydophila abortus S26/3] gi|62148148|emb|CAH63905.1| N utilization substance protein A [Chlamydophila abortus S26/3] Length = 434 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 149/424 (35%), Positives = 241/424 (56%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR G N+I+DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAVLE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I ++V + IG+RG N RL SQ+ + +++ E + + + Sbjct: 302 DDKVIAIVVQDADYATVIGQRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + +++ LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|254382096|ref|ZP_04997458.1| transcription elongation factor NusA [Streptomyces sp. Mg1] gi|194341003|gb|EDX21969.1| transcription elongation factor NusA [Streptomyces sp. Mg1] Length = 336 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 131/347 (37%), Positives = 199/347 (57%), Gaps = 21/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV ++ G + ++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSFRRARVVLDRTNGHVVVWAT---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPR---DLEEGQEPK---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDL 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + G++I+G V++ + NV+VD+G + ++ E + E+ G R+K+Y+ Sbjct: 106 TFGEFAGREGDVITGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEDYTHGLRLKTYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEICAIAREAGHRTKIAVRSTRAGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D D Sbjct: 226 NPKGACIGPMGARVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDWDTRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + +D Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAEGADRD 332 >gi|261367202|ref|ZP_05980085.1| transcription termination factor NusA [Subdoligranulum variabile DSM 15176] gi|282570800|gb|EFB76335.1| transcription termination factor NusA [Subdoligranulum variabile DSM 15176] Length = 357 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 146/350 (41%), Positives = 210/350 (60%), Gaps = 6/350 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59 M +AN E A+ E+ + D ++ + +I A + Y ++ V+I+PE G Sbjct: 1 MATANN-EFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGA 59 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L ++VEEVEN Q+SL+ A+ S +G + L +FGR+A Q+AK VI Sbjct: 60 FRASLLRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIR 119 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRENL 176 Q +RE ER+ Q E + + E+I+ TV + E GNV++DLG V+ R+E + E Sbjct: 120 QGLREGERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETF 179 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+ V+ Y+ DV RGP+V +SRTHP + ++F +EVPEIY+G V++KA++R+ G+R Sbjct: 180 HEGETVQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGAR 239 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 KLAV+S + +DPVGAC+G RG+RV+ +V EL EKID++ WS D F+ AL PA V Sbjct: 240 TKLAVWSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKV 299 Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 KV L V VP QLSLAIG +GQNVRL + LTG+ IDI E Sbjct: 300 VKVELLPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDIRPES 349 >gi|332523131|ref|ZP_08399383.1| transcription termination factor NusA [Streptococcus porcinus str. Jelinkova 176] gi|332314395|gb|EGJ27380.1| transcription termination factor NusA [Streptococcus porcinus str. Jelinkova 176] Length = 384 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 134/386 (34%), Positives = 218/386 (56%), Gaps = 24/386 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I++D ++ + +S++ A + YG +E N +TGD +F + Sbjct: 2 SKEMLEAFRILEEEKHINKDDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 MREITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDEIDSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDAL 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLL 376 + + +N E + +L Sbjct: 362 ETEQ---------EHVNTSEEVEQVL 378 >gi|325000941|ref|ZP_08122053.1| transcription elongation factor NusA [Pseudonocardia sp. P1] Length = 344 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 198/353 (56%), Gaps = 25/353 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 A+ +K I + VL + ++ A R G SD RV+I+ +TG + + Sbjct: 7 ALRAIERDKEIPFETVLEAIETALLTAYRHTEGHHSDARVDIDRKTGVVRVLAR------ 60 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + A D P + P FGR+A +A+QVI+Q++R+AE +R Y Sbjct: 61 -------DASDAAEDGTPGPEFDD------TPEGFGRIAATTARQVIVQRLRDAEHERTY 107 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 EF K GE+++G V+R N VIV+LG ++ V+ E + E + G+R++ Y+ Sbjct: 108 GEFSTKEGEVVAGIVQRDARANARGVVIVELGGGTEAVLPAAEQVPGEVYQHGERIRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R RG + LSRTHP + KLF +EVPE+ +G +++ +V+R+ G R+K+AV S+ Sbjct: 168 IGVARGPRGTTITLSRTHPNLVRKLFALEVPELVDGSIEIVSVAREAGFRSKIAVRSARP 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 ++ GAC+G G+RV+ V+ EL EKIDI+ WS D FV NAL P+ V V VLDE Sbjct: 228 GLNAKGACIGPMGARVRGVMGELAGEKIDIIDWSEDPGEFVGNALSPSKVVSVTVLDERA 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + D + Sbjct: 288 RIARVVVPDFQLSLAIGKEGQNARLAARLTGWKIDIRSDADPRDPVGPDGDPV 340 >gi|325847934|ref|ZP_08170105.1| transcription termination factor NusA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480803|gb|EGC83857.1| transcription termination factor NusA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 410 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 224/356 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKEFIIALEELEKSKNVDKKIILEALEKALVKSYQKNYENNENVDVNIDEETGEIEVYSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +IS AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A Sbjct: 62 KNVVDEVNDPIAEISKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ D+ EII+G V+R + NV ++L +G+I E + E R+K Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D Sbjct: 182 IKDVKNTTKEPQIILSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID +GAC+G +GSRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++ Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 + V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q + +E Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDKLDQDEIDEILGL 357 >gi|332670044|ref|YP_004453052.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484] gi|332339082|gb|AEE45665.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484] Length = 350 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 128/352 (36%), Positives = 205/352 (58%), Gaps = 27/352 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q + E+ I DV+++ + ++ A G+ RVE++ +G ++++ Sbjct: 5 MQALRLLEREREISLDVLVAAIEQALLSAYHRTPGSHQRARVEVDRRSGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVRE 124 AR+ P + G V +P P FGR+A +A+QVI+Q++R+ Sbjct: 59 --------------AREPAPVGEDGRPVEVDMPEFDDTPDGFGRIATATARQVIVQRLRD 104 Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 AE D+ F+ K GE++ G +++ + V+VD+G ++ V+ + E + E G+R++ Sbjct: 105 AEDDQVLGTFRGKEGEVLGGVIQQGRDPRTVLVDVGGTEAVLPQHEQVPGEEYVHGERLR 164 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ +V R RGPQV LSRTHP + +LF +EVPE+ +G V++ A++R+ G R K+AV + Sbjct: 165 AYVLEVARGPRGPQVTLSRTHPNLVRRLFALEVPEVADGTVEITAMAREAGHRTKMAVRA 224 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 + + ++ GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA V V V+D Sbjct: 225 TVAGVNAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVVSVTVVD 284 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + D Sbjct: 285 PDARAARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAETGAADESD 336 >gi|330997781|ref|ZP_08321616.1| transcription termination factor NusA [Paraprevotella xylaniphila YIT 11841] gi|329569669|gb|EGG51434.1| transcription termination factor NusA [Paraprevotella xylaniphila YIT 11841] Length = 420 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 145/423 (34%), Positives = 238/423 (56%), Gaps = 11/423 (2%) Query: 4 ANRLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D A K+IDR ++SV+ +S + L+G+ + V +NP+ GD Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV EV++ +ISL AR D ++G VS+ + FGR A+ + +Q + Sbjct: 62 EIYRNRTVVADGEVKDGNREISLTEARQIDEDYEVGEEVSENVDFAGFGRRAILTLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLR 177 K+ E E D Y ++KD+VGEI+S V ++ ++ VD ++ ++ + E I + R Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPATVN 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E E + D Sbjct: 302 SVRIHEEERKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFREIEGAEGEGDDI-- 359 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREY 416 F+ ++D+ I L G +++ + S +EET E ++ A E+ Sbjct: 360 YLDEFVG--DIDQWIIDALKGIGMETAKDVLNAPREMLVSRADLEEETVDEVLRILAEEF 417 Query: 417 LEG 419 E Sbjct: 418 EEE 420 >gi|315606722|ref|ZP_07881732.1| transcription termination factor NusA [Prevotella buccae ATCC 33574] gi|315251577|gb|EFU31556.1| transcription termination factor NusA [Prevotella buccae ATCC 33574] Length = 421 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 138/414 (33%), Positives = 234/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ +ISL A+ +P ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 73 VADGEVEDENKEISLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E +++ D + + F Sbjct: 313 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREIDENA---ADEDIYLEEFSD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G +++ + +EET + R E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNVLNVLRAEFEQ 421 >gi|315302978|ref|ZP_07873697.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] gi|313628646|gb|EFR97060.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] Length = 312 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 133/281 (47%), Positives = 193/281 (68%) Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VRE Sbjct: 1 RKEAVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVRE 60 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Sbjct: 61 AERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKV 120 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V+++ Sbjct: 121 YLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTA 180 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 181 NEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEA 240 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 241 DQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 281 >gi|329117087|ref|ZP_08245804.1| transcription termination factor NusA [Streptococcus parauberis NCFD 2020] gi|326907492|gb|EGE54406.1| transcription termination factor NusA [Streptococcus parauberis NCFD 2020] Length = 395 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 219/389 (56%), Gaps = 21/389 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I++ ++ + +S++ A + YG +E N +TGD +F + Sbjct: 13 SKEMLEAFRILEEEKHINKSDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFTV 72 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +I LK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 73 REVVEEVFDSRLEIGLKDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 132 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 133 MREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 193 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 253 PNVDAIGTIVGRGGSNIKKVISKFHPKRFDQKAGAEIPVEENIDVIQWVDDPAEFIYNAI 312 Query: 292 RPAIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 313 APAEVDMVLFDEADSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYERM 372 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAE 379 + N+ T+ V+E IA E Sbjct: 373 EAEQENQSTEL------VEETIAPTNEEE 395 >gi|15639877|ref|NP_219327.1| transcription elongation factor NusA [Treponema pallidum subsp. pallidum str. Nichols] gi|189026115|ref|YP_001933887.1| transcription elongation factor NusA [Treponema pallidum subsp. pallidum SS14] gi|3323210|gb|AAC65849.1| N utilization substance protein A (nusA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018690|gb|ACD71308.1| N utilization substance protein A [Treponema pallidum subsp. pallidum SS14] gi|291060251|gb|ADD72986.1| transcription elongation protein NusA [Treponema pallidum subsp. pallidum str. Chicago] Length = 485 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 155/467 (33%), Positives = 240/467 (51%), Gaps = 28/467 (5%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A EK +D D ++ +++ A ++ + T + V E + ++ VVEEV + Sbjct: 13 AQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEE--RVCIYARKRVVEEVYDRV 70 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 ++ L A + DP+ + V L DF R +VQ+A Q I + RE ++D Y E+K Sbjct: 71 SEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYAEYKS 130 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 K GEII G +R ++ VDLG +G++ + + +++ R DR+KS + +VR+ + Sbjct: 131 KEGEIIVGYYQRARNEHIYVDLGKVEGLMPKSHQLPQDDYRQNDRIKSLVREVRKHPKSS 190 Query: 197 --QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 Q++LSRT F+ +L +EVPEIY+GIV+V + R+PG R K+AV S +DPVGAC Sbjct: 191 VVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVDPVGAC 250 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 VG RG R++ V+ EL DEKID++ +SPD F+ NAL PA V VV+ DE+ IV Sbjct: 251 VGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSALAIVA 310 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ------------F 361 + QLS+AIG++G NVRLA++L W ID+ TE + R Sbjct: 311 ESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDYQEESE 370 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + + +L G DV+ L + + ++EG DE E+ E E Sbjct: 371 FSSYVGFTPELIKILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLAAIEENFE--- 427 Query: 422 ITLQKKIRELGVSEELCSIPGI--DSKIKVALGENGIKTMEDLAGCS 466 + E G + S PG D + E G++ D++ C Sbjct: 428 ------VVEEGEEASVTSSPGTGGDEDQALQCPECGVRITTDMSECP 468 >gi|257457666|ref|ZP_05622833.1| transcription elongation factor NusA [Treponema vincentii ATCC 35580] gi|257445052|gb|EEV20128.1| transcription elongation factor NusA [Treponema vincentii ATCC 35580] Length = 485 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 251/471 (53%), Gaps = 19/471 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISLFRLLE 67 ++ A EK +D D+ + ++ +++ A ++ + T ++ V TGD I+++ + Sbjct: 6 IEDVRKFALEKELDEDLAIKIVEQTLKAAYKTAFKTDANAVVI----TGDDAINIYARKK 61 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V++V ++ ++ A P +IG + L P DF R ++Q+ Q + Q RE ++ Sbjct: 62 IVDDVVKPELEVDIEEATKLAPDCEIGDELLFELDPKDFKRGSIQAGVQRVHQSTREIQK 121 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y E+K K GEII G +R + N+ VDLG +G++ R + +E P DR+K+ I Sbjct: 122 DSIYSEYKAKEGEIIIGYYQRKKNDNIYVDLGKVEGLLPRKFQLPQEIYHPNDRIKALIK 181 Query: 188 DVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +V+ R+ Q++LSRT P F+ +L +EVPEIY+ IV++ + R+PG R K+AV S Sbjct: 182 EVKKHRQSNVVQLILSRTDPDFVRRLMELEVPEIYDNIVELYKIVREPGYRTKVAVISHR 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +GSR+Q ++TEL EKID++ +S D A F+ NAL PA V VV+ + Sbjct: 242 EDVDPVGACVGPKGSRIQTIITELEGEKIDVLEYSSDPAVFIANALSPAEVLNVVILDAE 301 Query: 306 GRIEV-IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD---------F 355 R+ + +V + QLS+AIG++G NVRLA++L W+ID+ TE++ F Sbjct: 302 KRMALAVVAESQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFQEMDIHAETRKAAEELF 361 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 N+ +D + L VE+L + E+ ++ G EE A ++ E Sbjct: 362 NDDAVLLKDVEGIDPGVLAALHENHIETVEQLLDIPHEELRALPGMSEEKAAALEALINE 421 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 E ID Q+ +E + D++ E G D+ C Sbjct: 422 TFEIID-ENQESAQEPQPENQTMPASSEDAEEVYECPECGAPITIDMTVCP 471 >gi|228476580|ref|ZP_04061262.1| transcription termination factor NusA [Streptococcus salivarius SK126] gi|228251775|gb|EEK10840.1| transcription termination factor NusA [Streptococcus salivarius SK126] Length = 399 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 136/384 (35%), Positives = 217/384 (56%), Gaps = 20/384 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD ++ + Sbjct: 2 SKEMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y Sbjct: 122 MREITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEAL 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAH 374 + T+ VDEI+A Sbjct: 362 EAEKAEAATEEV-----VDEIVAE 380 >gi|297621094|ref|YP_003709231.1| Transcription elongation protein nusA [Waddlia chondrophila WSU 86-1044] gi|297376395|gb|ADI38225.1| Transcription elongation protein nusA [Waddlia chondrophila WSU 86-1044] Length = 424 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 149/420 (35%), Positives = 239/420 (56%), Gaps = 10/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I + + EK I R++V+ + +S+Q AAR S++ V+I+P+TG+I++F Sbjct: 2 NKDLVAIFEYLEKEKGIQREIVIHAIEESLQAAARKSVSGASNVTVQIDPKTGNINVFSE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V+EVE +I L+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R A Sbjct: 62 KEIVDEVEVPAQEILLEEAREIDPDCEIGQFIDILATPKDFGRIAAQKARQIISQKLRSA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V E++SGTVKR G N++VDLG + ++ + E + GDRV + Sbjct: 122 ERDVIYEEYRHRVNEVVSGTVKRFVKGANLVVDLGKVEALMPMRQYPKTEKYKIGDRVLA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V + G +V+LSR+ P+F+ +L EVPEI GIV + + R+ G R KL V + Sbjct: 182 LLMEVNDTDSGGAEVILSRSSPEFVRQLMIQEVPEIVEGIVVIDKIEREAGYRTKLTVRA 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRG+RV+ VV EL EKIDI+ +S D + NAL P + K+ + E Sbjct: 242 TDQKVDPVGACVGMRGNRVKNVVRELNSEKIDIIPYSDDPIELLQNALSPIEIRKISISE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF-- 361 D I +++ + + IG++G N RL S+L G+ +++ + + E + Sbjct: 302 DDRVISIVIDDDDYAAVIGKKGMNARLNSRLIGYELEVQRMTDYNKTMAIQRTELAESDD 361 Query: 362 ------FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V++++ LVAEGF L ++++ E A I + R+ Sbjct: 362 PTLDHPLTGIEGVNKLVFEHLVAEGFNTPRTLLLASPEQLSNAASISLEMADHILEQVRK 421 >gi|306820436|ref|ZP_07454072.1| transcription termination factor NusA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551511|gb|EFM39466.1| transcription termination factor NusA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 359 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 134/354 (37%), Positives = 220/354 (62%), Gaps = 12/354 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + +K I ++++L + +I A + YG+ +++ V I+ + GDI + Sbjct: 2 NTEFIRALDQLEKQKGIKKEILLDAINQAILNAYKKNYGSNAEVEVSIDTKKGDIKIINP 61 Query: 66 LEVVEE--VENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +V++ V+ +++++ A + G +V + + P DFGR+A Q+A+Q+++QK+ Sbjct: 62 ITIVDDDKVDILDNEMTVEYANQFFGKQYKEGDIVREEVTPKDFGRIATQAARQIVVQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISR 173 +EAE+D QY EFK K EII+G V R+ V D+ N++GV+ E +S Sbjct: 122 KEAEKDIQYTEFKKKETEIITGMVSRISKSTVYADISILGENDIMINAEGVLPNGEQMSG 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 +N G +K YI +V+R Q++LSR+HP + +LF MEVPEI++G V++ ++SR+ Sbjct: 182 DNYELGQNMKFYILEVKRTNNKTQIVLSRSHPGLVKRLFEMEVPEIFDGTVEIISISREA 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSR K+AV ++ +DP+GACVG RG RV+ + E+ EKIDI+ ++ D A ++ +L P Sbjct: 242 GSRTKMAVKTNMQDVDPIGACVGTRGQRVKNITDEINGEKIDIIEYNDDLAEYITASLSP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 A V V +DE+ +VIVP ++LSLAIG+ GQN RLA++LT W IDI E E Sbjct: 302 AKVVSVEIDEEEKIAKVIVPDDKLSLAIGKEGQNARLAAKLTNWKIDIKCESEM 355 >gi|284030871|ref|YP_003380802.1| NusA antitermination factor [Kribbella flavida DSM 17836] gi|283810164|gb|ADB32003.1| NusA antitermination factor [Kribbella flavida DSM 17836] Length = 330 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 130/339 (38%), Positives = 198/339 (58%), Gaps = 24/339 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I +VV+ + ++ A G R E++ +TG +++F Sbjct: 5 MAVLRSLEREKDIAFEVVVEAIEQALLVAYHRTEGAQQHARAELDRKTGHVTVF------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ P + D P DFGR+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AREMGPDGTLVREYDD--TPADFGRIAATTAKQVILQRLRDAEDEV 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Y EF K G+I+SG V++ + +V+VDLG + V+ E + E G R++ Y+ Sbjct: 103 RYGEFSGKEGDIVSGVVQQGRDPRSVMVDLGKIEAVLPGPEQVPGEKYEHGSRLRVYVVG 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ +GPQ+ +SRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV + + S+ Sbjct: 163 VRKGFKGPQITVSRTHPNLVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRTLNPSV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ ++ EL EKIDI+ S D ATFV NAL PA V+ V +D Sbjct: 223 NGKGACIGPMGQRVRNIMHELHGEKIDIIDHSDDPATFVGNALSPAQVSSVEVVDAAARA 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTD 321 >gi|256832250|ref|YP_003160977.1| NusA antitermination factor [Jonesia denitrificans DSM 20603] gi|256685781|gb|ACV08674.1| NusA antitermination factor [Jonesia denitrificans DSM 20603] Length = 354 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 135/347 (38%), Positives = 208/347 (59%), Gaps = 10/347 (2%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I DV+L + ++ A + ++ RVEI+ +TG + ++ Sbjct: 5 MAALRMLEREREISLDVLLEAIEQALALAYQRTPDSLRHARVEIDRKTGQVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EE+E ++ + A P ++G P DFG VA +A+QVI Q++R+ E D+ Sbjct: 61 EEIEREPARVDDEGA-YVPPVRELGDEFD--HTPKDFGHVATATARQVIFQRMRDVEDDQ 117 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIY 187 +FKDK G ++SG +++ V VDLGN + V+ E + E+ R G RV++Y+ Sbjct: 118 VLGQFKDKEGHVVSGIIQQAAHPRAVNVDLGNGVEAVLPEHEQVPGEDYRHGARVRAYVV 177 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V R+ +GP + LSRTHP + +LF MEVPE+ +G V++ A++R+ G R K+AV S+ Sbjct: 178 EVARKAKGPSITLSRTHPNLVRRLFEMEVPEVADGAVEIIALAREAGHRTKMAVTSTIPG 237 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++P GAC+G G RV+AV+ EL EKIDIV ++ D A F+ +AL PA V+ V +LDE Sbjct: 238 LNPKGACIGPMGQRVRAVMAELGGEKIDIVDYTEDPAQFIASALSPATVSSVSILDERAR 297 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ +D + Sbjct: 298 MARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIRSDADDQGAEVE 344 >gi|125624585|ref|YP_001033068.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris MG1363] gi|124493393|emb|CAL98367.1| transcription elongation factor nusA [Lactococcus lactis subsp. cremoris MG1363] gi|300071376|gb|ADJ60776.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris NZ9000] Length = 382 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 138/367 (37%), Positives = 219/367 (59%), Gaps = 2/367 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ Sbjct: 2 SKEMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYST 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE Sbjct: 62 REVVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y Sbjct: 122 ERTIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D Sbjct: 182 VTDVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ Sbjct: 242 ENVDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLIT-AD 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G +V ++QLSLAIG+RGQNVRLA+ +T IDI +E + +F Sbjct: 301 GSSLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFN-MDDYEFVGEADEETPT 359 Query: 366 INVDEII 372 + V+E I Sbjct: 360 LEVEETI 366 >gi|288925326|ref|ZP_06419260.1| transcription termination factor NusA [Prevotella buccae D17] gi|288337797|gb|EFC76149.1| transcription termination factor NusA [Prevotella buccae D17] Length = 421 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 137/414 (33%), Positives = 233/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 73 VADGEVEDENKEICLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E +++ D + + F Sbjct: 313 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREIDENA---ADEDIYLEEFSD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G +++ + +EET + R E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNVLNVLRAEFEQ 421 >gi|307565711|ref|ZP_07628180.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A] gi|307345537|gb|EFN90905.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A] Length = 421 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 238/413 (57%), Gaps = 8/413 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + +R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD Sbjct: 6 IEEDRPNMVETFKEFKDTKSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++R VV +E+EN QISL AR +P ++G VS+ + FGR A+ + +Q + Sbjct: 66 IYRNRVVVADDELENENKQISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLA 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRP 178 K+ E E D Y ++K++VG+I+SG V + V+ VD N++ ++ + E I R+N R Sbjct: 126 SKILELEHDSLYNKYKNRVGQIVSGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRK 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G+ +++ I+ V + P+++LSRT P+F+ +L EVPEI +G++ +K V+R PG RAK Sbjct: 186 GETIRAVIHRVTNDNNNPKIILSRTAPEFLERLLEAEVPEINDGLIAIKKVARMPGERAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ Sbjct: 246 IAVESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSS 305 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E +++ + + Sbjct: 306 LTIDEETKKAEVYLQPEEVSLAIGRNGLNIKLASMLTDYTIDVFRELDENET---EDDIY 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D+ + + G ++ + +EET + Sbjct: 363 LDEFAD--EIDQWVIDAIKGIGMETARQVLNAPREMLIEKADLEEETVDNVLN 413 >gi|227529106|ref|ZP_03959155.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC 49540] gi|227350950|gb|EEJ41241.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC 49540] Length = 410 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 136/404 (33%), Positives = 220/404 (54%), Gaps = 50/404 (12%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ V+ + TG+I ++ + Sbjct: 7 NTEMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNYG-EKNVEVDFDGVTGNIKVYAV 65 Query: 66 LEVVEEV----ENYTCQISLKVARD--RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + + E+ +SL AR D+G + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRP 178 Q++RE ER Y ++K EII+G V R + VDLG+ +G + + + E+ Sbjct: 126 QRLREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHI 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++ GPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLD 305 Query: 299 VVLDED----------------------------------------VGRIEVIVPKEQLS 318 V+ +E V+VP QLS Sbjct: 306 VIFNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLS 365 Query: 319 LAIGRRGQNVRLASQLTGWTIDII--TEEEDSINRQKDFNERTQ 360 LAIG+RGQN RLA++LT + IDI +E ED+ + ++ + ++ Sbjct: 366 LAIGKRGQNARLAARLTKYKIDIKPASEMEDNTDTLEEETDASE 409 >gi|330444480|ref|YP_004377466.1| transcription termination factor NusA [Chlamydophila pecorum E58] gi|328807590|gb|AEB41763.1| transcription termination factor NusA [Chlamydophila pecorum E58] Length = 435 Score = 402 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 147/431 (34%), Positives = 242/431 (56%), Gaps = 10/431 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++S + +++ AA+ ++I V INP TGDI +F Sbjct: 2 NKDLIAIFDYMEKEKGIQRTTIISAIESALKIAAKKTLRDDANISVNINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V+ N + +I L AR+ DP +IG + P +FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVDFCNNPSKEIPLDKAREFDPDCEIGQYMDVPFVSENFGRIAAHTARQIIGQKLRYA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR G N+I+DLG + ++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFVKGSNLIIDLGKVEAILPARFYPKTEKHKIGDKIYA 181 Query: 185 YIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V+ + G +V+LSR+HP+F+ +LF EVPE+ G+V + ++R+PG R KLAV S Sbjct: 182 LLYEVQELDNGGAEVILSRSHPEFVKQLFLQEVPELEEGVVSIVKIAREPGYRTKLAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRG+RV+ ++ EL DEKIDIV +S + N L P + K+ + E Sbjct: 242 SDFKTDPVGAFVGMRGARVKNIIRELNDEKIDIVNYSSTPTELLQNLLYPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI------NRQKDFN- 356 D I ++V + IG+RG N RL SQ+ + +++ E + + +F+ Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 357 -ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + Q + + +++ L G+ + ++ S+++S+ G E A +I + + Sbjct: 362 PQLDQPLQEIEGISKLVIQNLEHAGYDTIRKVLLASASDLSSVPGIGLELAYKILEQVSK 421 Query: 416 YLEGIDITLQK 426 Y EG + Sbjct: 422 YGEGKVDEKPE 432 >gi|295836231|ref|ZP_06823164.1| transcription termination factor NusA [Streptomyces sp. SPB74] gi|295825916|gb|EFG64550.1| transcription termination factor NusA [Streptomyces sp. SPB74] Length = 365 Score = 402 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 127/339 (37%), Positives = 193/339 (56%), Gaps = 18/339 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ V Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW----VK 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 61 EDEADLADLGEGARAREFDD------------TPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V V+D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPAELVAHALSPARVSHVEVVDLATRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 327 >gi|281491260|ref|YP_003353240.1| transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] gi|281375001|gb|ADA64519.1| Transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] Length = 382 Score = 402 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 215/348 (61%), Gaps = 1/348 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ Sbjct: 2 SKEMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYST 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE Sbjct: 62 REVVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y Sbjct: 122 ERTIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D Sbjct: 182 VTDVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ Sbjct: 242 ENVDAIGTMVGAKGSRIQGIIHELAGEKMDIIEWSEDKATLVANALKPARIEQVLIT-AD 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 G +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 301 GSSLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348 >gi|212550409|ref|YP_002308726.1| transcription elongation factor NusA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548647|dbj|BAG83315.1| transcription elongation factor NusA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 417 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 133/416 (31%), Positives = 228/416 (54%), Gaps = 13/416 (3%) Query: 11 QIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + +A A K+IDR ++SV+ ++ + A ++G+ + + +NP+ GD ++R E Sbjct: 9 NMIEAFANFKSNKNIDRTTLISVLEETFRNAINKMFGSDKNYNIIVNPDKGDFEIWRNRE 68 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + +EN QI+L AR DP + G +SD + FGR V + +Q++ K+ E Sbjct: 69 VVPDDKLENPNLQITLSEARKIDPDYESGEEISDAVNFSSFGRRTVLNLRQILTSKILEL 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + + Y ++KDK+G I++G V ++ + ++D ++ ++ + E I + R + ++ Sbjct: 129 QNNSLYNKYKDKIGHIVTGEVYQIWKKEILLLDDEGNELILPKSEQIPNDFFRKNESCRA 188 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V P+++LSRT FM +LF +EVPEI +G++ +K ++R PG RAK+AV S Sbjct: 189 VVLRVDNNYSNPKIILSRTSNSFMQQLFELEVPEIQDGLITIKHIARIPGERAKIAVESY 248 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + IDP+G CVGM+G R+ +V ELR+E IDI+ ++ + + F+ AL PA ++ + + E Sbjct: 249 NERIDPIGTCVGMKGMRIHGIVRELRNENIDIINYTSNISLFIQRALSPAKISSIKIHEK 308 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + EV + E++SLAIG+ G N++LAS LTG+TID+ E E D + F Sbjct: 309 EKKAEVFLRPEEVSLAIGKSGLNIKLASILTGYTIDVFREGE-----NDDEDIYLDEFKD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 ++E I L G + + EI +E T EI + E Sbjct: 364 --EIEEWIIEALKNIGCYTAKSVLTKNKEEIVRQTDLEENTVDEILKILKTEFEEE 417 >gi|258647228|ref|ZP_05734697.1| transcription termination factor NusA [Prevotella tannerae ATCC 51259] gi|260852981|gb|EEX72850.1| transcription termination factor NusA [Prevotella tannerae ATCC 51259] Length = 419 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 136/411 (33%), Positives = 235/411 (57%), Gaps = 11/411 (2%) Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E++ + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD + Sbjct: 5 KAEVISLTDTFAEFKENKNIDRTTLVSVLEESFRSVITKLFGSDENFDVIVNPDKGDCEI 64 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV + VE++ QISL AR+ D + G VS+P+ FGR A+ + +Q + Sbjct: 65 YRNRVVVADNAVEDHKSQISLTEAREIDSDYEEGEEVSEPINFAKFGRRAILTLRQTLAS 124 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPG 179 K+ E + D + ++KD+VGEII+ V + +++D ++ + +++ I R+ G Sbjct: 125 KLLELDHDALFNKYKDRVGEIIAAEVYQTWKQETLLMDDEGNELYLPKNQQIPRDFFHKG 184 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D V++ I V P++ LSRT P+F+ +L E+PEI +G++ +K ++R PG RAK+ Sbjct: 185 DNVRAVIDRVDNLNGTPKIFLSRTSPEFLRRLLEQEIPEIGDGLISLKRIARIPGERAKI 244 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + A F+ AL PA V+ + Sbjct: 245 AVESYDDRIDPVGACVGVKGSRIHGIVRELHNENIDVINYTSNPALFIQRALNPAQVSSI 304 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 LDE+ + +V + E++SLAIG+ GQN++LAS LT +TID+ E E ++ + Sbjct: 305 QLDEENRKAQVYLRPEEVSLAIGKGGQNIKLASMLTEYTIDVFREVE---GDDQEDDIFL 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +D+ + + + G +++ + +E T E+ Sbjct: 362 DEFAD--EIDQWVIDAIKSIGLQTAKDVLNAPRQMLIEKADLEESTVDEVL 410 >gi|55820434|ref|YP_138876.1| transcription elongation factor NusA [Streptococcus thermophilus LMG 18311] gi|55822318|ref|YP_140759.1| transcription elongation factor NusA [Streptococcus thermophilus CNRZ1066] gi|55736419|gb|AAV60061.1| transcription termination-antitermination factor [Streptococcus thermophilus LMG 18311] gi|55738303|gb|AAV61944.1| transcription termination-antitermination factor [Streptococcus thermophilus CNRZ1066] Length = 395 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 131/355 (36%), Positives = 207/355 (58%), Gaps = 15/355 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + Sbjct: 2 SKEMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y Sbjct: 122 MREITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 PA V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + Sbjct: 302 APAEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSAS 356 >gi|119717416|ref|YP_924381.1| transcription elongation factor NusA [Nocardioides sp. JS614] gi|119538077|gb|ABL82694.1| transcription termination factor NusA [Nocardioides sp. JS614] Length = 327 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 131/341 (38%), Positives = 198/341 (58%), Gaps = 24/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + EK I DV++ + ++ A G RV ++ ++G +++ Sbjct: 5 MSILRMLEREKEISFDVLVEAIEQALLTAYHKSPGAHEQARVVLDRKSGHVTVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + G D P FGR+A +AKQ+++Q++R+AE D Sbjct: 59 --------------ASEVDEEGNAVGEYDD--TPAGFGRIAATTAKQIMLQRLRDAEDDV 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 ++ EF K G+IISG +++ +V+VDLG + ++ E + E G R+K + Sbjct: 103 RFGEFSGKEGDIISGIIQQGRNPDDVMVDLGKLEALLPVGERVPGERYDHGTRIKCLVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R KLAV S+ + Sbjct: 163 VRKGMRGPQITLSRSHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKLAVRSTVPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G GSRV+AV++EL EKIDIV WS D A V +AL PA VT V ++D Sbjct: 223 NAKGACIGPMGSRVRAVMSELHGEKIDIVDWSEDPAEMVAHALSPARVTSVEIVDAAAKS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++E ++ Sbjct: 283 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDEAEA 323 >gi|313889714|ref|ZP_07823357.1| transcription termination factor NusA [Streptococcus pseudoporcinus SPIN 20026] gi|313122011|gb|EFR45107.1| transcription termination factor NusA [Streptococcus pseudoporcinus SPIN 20026] Length = 384 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 131/382 (34%), Positives = 222/382 (58%), Gaps = 16/382 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + Sbjct: 2 SKEMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 MREVTYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSI 349 PA V V+ D+ D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + +++ Sbjct: 302 APAEVDMVLFDDTDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYEAL 361 Query: 350 NRQKDFNERTQFFMQAINVDEI 371 +++ ++ Q + V E Sbjct: 362 EAEQEEVNTSEEVDQGLPVTEE 383 >gi|15672746|ref|NP_266920.1| transcription elongation factor NusA [Lactococcus lactis subsp. lactis Il1403] gi|12723682|gb|AAK04862.1|AE006310_4 transcription termination protein NusA [Lactococcus lactis subsp. lactis Il1403] Length = 382 Score = 401 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 215/348 (61%), Gaps = 1/348 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ Sbjct: 2 SKEMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYST 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE Sbjct: 62 REVVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y Sbjct: 122 ERTIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D Sbjct: 182 VTDVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ Sbjct: 242 ENVDAIGTMVGTKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLIT-AD 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 G +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 301 GSSLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLDDYE 348 >gi|312139328|ref|YP_004006664.1| transcriptional termination/antitermination factor nusa [Rhodococcus equi 103S] gi|325676662|ref|ZP_08156337.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] gi|311888667|emb|CBH47979.1| transcriptional termination/antitermination factor NusA [Rhodococcus equi 103S] gi|325552517|gb|EGD22204.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] Length = 343 Score = 401 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 195/345 (56%), Gaps = 30/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I +++ + ++ A R G R++++ ++G + + Sbjct: 5 IAALRAIEADKGISAGTIIAAIETALLTAYRHTEGHQPHARIDVDTKSGVVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ARD D + G D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 --------------ARDVDSDGNQVGEEWDD-TPEGFGRIAATTARQVILQRLRDAEHER 103 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 + EF GEI+ G ++R N V+V +G ++G+I E + E GDR Sbjct: 104 SFGEFATHEGEIVGGVIQRDTRANARGMVVVRIGSEANGAEGLIPPAEQVPGETYEHGDR 163 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 164 IKCYVVGVSRGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIVAVARESGHRSKIAV 223 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V V Sbjct: 224 HSRVPGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDYDEDPAKFVGNALSPSKVVSVTV 283 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VDPEARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 328 >gi|258652414|ref|YP_003201570.1| transcription elongation factor NusA [Nakamurella multipartita DSM 44233] gi|258555639|gb|ACV78581.1| NusA antitermination factor [Nakamurella multipartita DSM 44233] Length = 336 Score = 401 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 198/345 (57%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + AV EK ID + ++ + ++ A R G RV+I+ +TG I ++ Sbjct: 5 IAALRAVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D S +I D P DFGR+A +A+QVI+Q++R+ + +R Sbjct: 59 --------------AQETDDSGEIVREWDD--TPEDFGRIAATTARQVILQRLRDVDNER 102 Query: 130 QYLEFKDKVGEIISGTV----KRVEYGNVIVDLGN----SDGVIRRDETISRENLRPGDR 181 + +F + ++I+GT+ K G V+V LG +G+I E + E+ G R Sbjct: 103 TFGDFAGREHDLITGTISADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVSVARGLRGPQITLSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VV 300 + + ++ GAC+G G+RV+AV++EL EKIDI+ + D ATFV NAL PA V Sbjct: 223 RPAVAGVNAKGACIGPMGARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 IDPVAKAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 327 >gi|167764123|ref|ZP_02436250.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC 43183] gi|167698239|gb|EDS14818.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC 43183] Length = 421 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 141/424 (33%), Positives = 242/424 (57%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QISL AR D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ +D + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAV---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EEGE 420 >gi|319947585|ref|ZP_08021815.1| transcription elongation factor NusA [Streptococcus australis ATCC 700641] gi|319746273|gb|EFV98536.1| transcription elongation factor NusA [Streptococcus australis ATCC 700641] Length = 381 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 213/380 (56%), Gaps = 15/380 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 2 SKEMLDAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQAESAAIEFNEKTGDFRVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ + Sbjct: 122 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDEEDSKHALVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEEM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + +VDE Sbjct: 362 EASQEPAFEEVESDLNSVDE 381 >gi|226226960|ref|YP_002761066.1| transcription elongation protein NusA [Gemmatimonas aurantiaca T-27] gi|226090151|dbj|BAH38596.1| transcription elongation protein NusA [Gemmatimonas aurantiaca T-27] Length = 438 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 158/430 (36%), Positives = 241/430 (56%), Gaps = 12/430 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A ++L ++ K I R+ + ++ D I A +G VEI+ G+I + Sbjct: 2 AGSADILTALRELSNLKQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIV 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L VV+EV + + +++++ AR DP +G V+ P+ M+FGR AVQ+AKQ IIQ+VR Sbjct: 62 LLKTVVDEVTDESREVTVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN---SDGVIRRDETISRENLRPGD 180 E ER R EF +VG+++SG V+++E G ++V L ++ +I E RE+ G+ Sbjct: 122 EGERTRIRDEFAGRVGDLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGE 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ + V +GP+++LSR+ F+ LF +EVPEI GIV++KA +R+ GSR K+A Sbjct: 182 PVRAVLKRVEDTPKGPRLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ++DPVGACVG++G+RVQAVV EL E+IDIV WSPD F AL PA V +V Sbjct: 242 VTSRDEAVDPVGACVGLKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVF 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT---------EEEDSINR 351 D I+ +V ++QLSLAIGR GQNVRLAS+LTGW ID+ + E Sbjct: 302 SDAASRTIQAVVDEDQLSLAIGRNGQNVRLASELTGWKIDLYSSREWLEKGGEAPLFAPL 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 ++ E + ++ +L G+ + ++ + ++ + G E A I Sbjct: 362 PEETEEADVPLNEIEGLETATVAVLAEAGYRTLNDILDLDRDDLLRLPGIAPEEADRIMA 421 Query: 412 RAREYLEGID 421 E D Sbjct: 422 IIDELTTEDD 431 >gi|326406315|gb|ADZ63386.1| transcription antitermination factor [Lactococcus lactis subsp. lactis CV56] Length = 382 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 215/348 (61%), Gaps = 1/348 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ Sbjct: 2 SKEMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYST 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE Sbjct: 62 REVVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y Sbjct: 122 ERTIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D Sbjct: 182 VTDVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ Sbjct: 242 ENVDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLIT-AD 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 G +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 301 GSSLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLDDYE 348 >gi|329954143|ref|ZP_08295238.1| transcription termination factor NusA [Bacteroides clarus YIT 12056] gi|328528120|gb|EGF55100.1| transcription termination factor NusA [Bacteroides clarus YIT 12056] Length = 421 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 141/424 (33%), Positives = 242/424 (57%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QISL AR D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ +D + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAV---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EEEN 420 >gi|255348459|ref|ZP_05380466.1| transcription elongation factor NusA [Chlamydia trachomatis 70] gi|255503001|ref|ZP_05381391.1| transcription elongation factor NusA [Chlamydia trachomatis 70s] Length = 434 Score = 400 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 148/424 (34%), Positives = 237/424 (55%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 R ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|15834991|ref|NP_296750.1| transcription elongation factor NusA [Chlamydia muridarum Nigg] gi|270285160|ref|ZP_06194554.1| transcription elongation factor NusA [Chlamydia muridarum Nigg] gi|270289179|ref|ZP_06195481.1| transcription elongation factor NusA [Chlamydia muridarum Weiss] gi|301336555|ref|ZP_07224757.1| transcription elongation factor NusA [Chlamydia muridarum MopnTet14] gi|7190412|gb|AAF39230.1| N utilization substance protein A [Chlamydia muridarum Nigg] Length = 434 Score = 400 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 144/420 (34%), Positives = 234/420 (55%), Gaps = 9/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG +K G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVIKSFSRGSNLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFMQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SSPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFED 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 R ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 >gi|312862513|ref|ZP_07722755.1| transcription termination factor NusA [Streptococcus vestibularis F0396] gi|322517414|ref|ZP_08070287.1| transcription termination factor NusA [Streptococcus vestibularis ATCC 49124] gi|311101918|gb|EFQ60119.1| transcription termination factor NusA [Streptococcus vestibularis F0396] gi|322123896|gb|EFX95455.1| transcription termination factor NusA [Streptococcus vestibularis ATCC 49124] Length = 399 Score = 400 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 137/384 (35%), Positives = 217/384 (56%), Gaps = 20/384 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + Sbjct: 2 SKEMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y Sbjct: 122 MREITYNDYKQHEGEIMQGTVERFDQRFIYVNLGALEAQLSRQDQIPGESFKSHDVIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEAL 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAH 374 + T+ VDEI+A Sbjct: 362 EAEKSEAATEEV-----VDEIVAE 380 >gi|318062643|ref|ZP_07981364.1| transcription elongation factor NusA [Streptomyces sp. SA3_actG] Length = 367 Score = 400 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 126/339 (37%), Positives = 194/339 (57%), Gaps = 18/339 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ + E Sbjct: 1 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-VKEEA 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++ + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 ADLADLG-----EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 105 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 165 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V V+D Sbjct: 225 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 323 >gi|213418035|ref|ZP_03351112.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 319 Score = 400 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 131/336 (38%), Positives = 204/336 (60%), Gaps = 18/336 (5%) Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 1 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 60 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 61 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 120 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 121 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 180 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 181 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 240 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 241 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 295 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 296 ------------GLTDEKAGELIMAAR-NICWFGDE 318 >gi|320537771|ref|ZP_08037693.1| transcription termination factor NusA [Treponema phagedenis F0421] gi|320145361|gb|EFW37055.1| transcription termination factor NusA [Treponema phagedenis F0421] Length = 488 Score = 400 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 154/467 (32%), Positives = 251/467 (53%), Gaps = 22/467 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 A EK +D D+ ++ +++ A ++ + T + V +S++ +VV+EV++ Sbjct: 12 FAQEKEMDEDLAFKIVEQTLKAAYKTTFKTDENAVVTFGDN--HVSIYSRKKVVDEVDDD 69 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I L+ A+ + ++G + L P +F R +VQ+A Q I Q RE ++D Y E+K Sbjct: 70 VTEIDLEDAKKLTENAELGDELLVELDPENFKRGSVQAAVQRIHQLSRELQKDSLYAEYK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K GEII G +R+ G++ VDLG +GV+ R I E DR+K+ I +V++ Q Sbjct: 130 SKEGEIIIGYFQRMREGSIYVDLGKVEGVLPRKYQIPGEEFHQNDRIKALIREVKKHQSN 189 Query: 196 -PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 Q++LSRT F+ L E+PEIY+GIV++ + R+PG R K+AVF+ IDPVGAC Sbjct: 190 LVQLILSRTDADFVRGLLSSEIPEIYDGIVEIHKIVREPGYRTKVAVFTRREDIDPVGAC 249 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 VG RG+R+Q ++ EL DEKID+V +S D A F+ NAL PA V V++ DE+ +V Sbjct: 250 VGQRGARIQTIIKELDDEKIDVVEYSDDPAEFIRNALSPAEVLNVIILDEEKRSALAVVS 309 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR--------------QKDFNERT 359 QLS+AIG++G NVRLA++L W+ID+ TE++ + + Sbjct: 310 DSQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFAEMEVVTDSRKAAEELFSDDEEVAEY 369 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + N+D I +L G ++E L + +E+ ++EG E E+ +E E Sbjct: 370 DIQEELPNLDPAIITILHQNGIKEIETLVNLSENEVRALEGMTSEYVEEL---FKEINEN 426 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +I +++I E + +P + + E G + D+ C Sbjct: 427 FEIVQEERIDEPEQTNTEEQLPEYEEQ-SFECPECGARITTDMTECP 472 >gi|166154318|ref|YP_001654436.1| transcription elongation factor NusA [Chlamydia trachomatis 434/Bu] gi|166155193|ref|YP_001653448.1| transcription elongation factor NusA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335569|ref|ZP_07223813.1| transcription elongation factor NusA [Chlamydia trachomatis L2tet1] gi|2160697|gb|AAB58904.1| NusA [Chlamydia trachomatis] gi|165930306|emb|CAP03792.1| N utilization substance protein A [Chlamydia trachomatis 434/Bu] gi|165931181|emb|CAP06746.1| N utilization substance protein A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 434 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 148/424 (34%), Positives = 237/424 (55%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFED 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 R ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|269795641|ref|YP_003315096.1| transcription termination factor NusA [Sanguibacter keddieii DSM 10542] gi|269097826|gb|ACZ22262.1| transcription termination factor NusA [Sanguibacter keddieii DSM 10542] Length = 365 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 206/343 (60%), Gaps = 8/343 (2%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV- 68 + + E+ I DV++S + ++ A + G RVEI+ ++G ++++ ++ Sbjct: 5 MSALRLLEREREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWAREDIE 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVV-----SDPLPPMDFGRVAVQSAKQVIIQKVR 123 EE D VV P DFGR+A +A+QVI+Q++R Sbjct: 65 TEEPVEPRYSDGDDADGTEDDEAPTTRVVRTLGPEFDDTPTDFGRIATSTARQVIMQRLR 124 Query: 124 EAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +AE D+ +F+DK GE++SG +++ + V+VD+G ++ V+ E + E G+R+ Sbjct: 125 DAEDDQVLGQFRDKEGELVSGIIQQGRDPRVVLVDVGGTEAVLGAHEQVPTEKYTHGERL 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 +SY+ DV R +GPQ+ LSRTHP + KLF MEVPE+ +G V++ A++R+ G R K+AV Sbjct: 185 RSYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRTKMAVR 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 + S ++ GAC+G GSRV+AV+ EL DEKIDIV W+ D A FV +AL PA V V V+ Sbjct: 245 ARVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVISVTVV 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 D D VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 305 DADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSD 347 >gi|218131824|ref|ZP_03460628.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697] gi|317474560|ref|ZP_07933834.1| transcription termination factor NusA [Bacteroides eggerthii 1_2_48FAA] gi|217986127|gb|EEC52466.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697] gi|316909241|gb|EFV30921.1| transcription termination factor NusA [Bacteroides eggerthii 1_2_48FAA] Length = 422 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 139/424 (32%), Positives = 241/424 (56%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV + +EN QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADKDLENPNLQISLSEAQKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ +D + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAV---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EEEE 420 >gi|288928619|ref|ZP_06422465.1| transcription termination factor NusA [Prevotella sp. oral taxon 317 str. F0108] gi|288329603|gb|EFC68188.1| transcription termination factor NusA [Prevotella sp. oral taxon 317 str. F0108] Length = 422 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 141/418 (33%), Positives = 233/418 (55%), Gaps = 8/418 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R Sbjct: 9 NILSMVDTFKEFKDTKNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNPDKGDFEIYR 68 Query: 65 LLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV EVE+ QI+L A+ +P ++G V++ + FGR A+ + +Q + K+ Sbjct: 69 NRMVVADGEVEDENKQIALAEAQKIEPDYEVGEEVTERVDFAKFGRRAILTLRQTLASKI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDR 181 E E D Y ++KD+VG++I+G V +V V IVD N++ ++ + E I + R G+ Sbjct: 129 LELEHDSLYNKYKDRVGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGET 188 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV Sbjct: 189 IRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKRIARMPGERAKIAV 248 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVG+RGSRV +V EL +E ID++ ++ ++ F+ AL PA V+ + + Sbjct: 249 ESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVINYTANTKLFIQRALSPAQVSSINI 308 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + D + Sbjct: 309 DEETRKAEVFLRPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVAEGE---ADEDIYLDE 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F VD+ + + + G + + + +EET + R E Sbjct: 366 FSD--EVDQWVIDAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDNLLRVLRAEFEQ 421 >gi|323343775|ref|ZP_08084002.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269] gi|323095594|gb|EFZ38168.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269] Length = 421 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 139/414 (33%), Positives = 234/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKDTKNIDRTTLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRMV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EV + +I+LK A+ +P +IG VS+P+ FGR A+ + +Q + KV E E Sbjct: 73 VADGEVADENKEIALKEAQKIEPDYEIGEEVSEPVNFAKFGRRAILNLRQTLASKVLELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V ++ V +VD N++ ++ + E I + R G+ +++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQIWKREVLVVDDENNELILPKSEQIPSDQYRKGETIRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA VT + +DE+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVTSITVDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ +++ + + + F Sbjct: 313 HKAEVYLQPEEVSLAIGRSGLNIKLASMLTEFTIDVFRVLDENEDNE---DIYLDEFAD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + A G +++ + +EET + + E Sbjct: 369 -EIDQWVIDAIKAIGLDTAKQVLNAPREMLIEKADLEEETVDNLLRVLKAEFEQ 421 >gi|281422606|ref|ZP_06253605.1| transcription termination factor NusA [Prevotella copri DSM 18205] gi|281403276|gb|EFB33956.1| transcription termination factor NusA [Prevotella copri DSM 18205] Length = 420 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 137/414 (33%), Positives = 234/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 12 MVDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRIV 71 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ +I+L AR +P ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 72 VADGEVEDENKEITLSEARKIEPDYEVGEDVSETVDFNKFGRRAILTLRQTLASKILELE 131 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V +V V IVD N++ ++ + E I + R G+ V++ Sbjct: 132 HDSLYNKYKDRVGQVISGEVYQVWKREVLIVDDENNELMLPKTEQIPGDTYRKGETVRAV 191 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV + D Sbjct: 192 ILRVDNENNNPKIILSRTAPIFLQRLLEAEVPEIADGLIAIRRIARLPGERAKIAVETFD 251 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E +D++ +S ++ F+ AL PA V+ + +D++ Sbjct: 252 ERIDPVGACVGVKGSRVHGIVRELCNENLDVINYSSNTKLFIQRALAPAKVSSINVDDEN 311 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E +++ D + F Sbjct: 312 KKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREVDENE---ADEDIYLDEFSD- 367 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + G +++ + + +EET + R E Sbjct: 368 -EIDQWVIDAIKGIGLDTAKQVLNAPRNLLIEKADLEEETVDHVLSVLRAEFEQ 420 >gi|325105520|ref|YP_004275174.1| NusA antitermination factor [Pedobacter saltans DSM 12145] gi|324974368|gb|ADY53352.1| NusA antitermination factor [Pedobacter saltans DSM 12145] Length = 411 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 227/398 (57%), Gaps = 13/398 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S N ++ Q K+IDR V+SV+ + + R +GT + V +NP+ GD+ Sbjct: 1 MSSINLIDSFQEFKDF---KNIDRPTVISVLEEVFRSMLRKRFGTDENCDVIVNPDNGDL 57 Query: 61 SLFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R V+E+ E+ +I L A DP +++G + + FGR A+ +A+Q + Sbjct: 58 EIWRTRTVMEDGFSEDDDLEIELADAHKIDPDLEVGDDFIEQITLESFGRRAILAARQTL 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 + K+ E E+D + +KD++GEI++G V +V +V D ++ ++ + E I + + Sbjct: 118 VSKILELEKDEIFKNYKDRIGEIVTGEVYQVWKKETLVLDDEGNELILPKTEQIPADYFK 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD V++ + V P++++SRT P F+ +LF +EVPE+++G++ +K + R+PG RA Sbjct: 178 KGDSVRAVVLKVDMMNANPKIIISRTAPAFLQRLFELEVPEVFDGLITIKNIVREPGERA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V EL++E ID++ ++ + + ++ AL PA ++ Sbjct: 238 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELKNENIDVINFTNNISLYIQRALSPAKIS 297 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + LD++ R V + +Q+SLAIGR G N++LA +LTG+ ID+ E + Sbjct: 298 SIKLDDETKRAAVYLKPDQVSLAIGRGGHNIKLAGKLTGYEIDVYREASEEDED-----V 352 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 F +D I L G + + + ++E+ Sbjct: 353 DLDEFSD--EIDSWIIDELKKVGLDTAKSVLALNVNEL 388 >gi|116627258|ref|YP_819877.1| transcription elongation factor NusA [Streptococcus thermophilus LMD-9] gi|116100535|gb|ABJ65681.1| Transcription elongation factor [Streptococcus thermophilus LMD-9] gi|312277742|gb|ADQ62399.1| Putative transcription factor [Streptococcus thermophilus ND03] Length = 391 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 130/352 (36%), Positives = 206/352 (58%), Gaps = 15/352 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + EV Sbjct: 1 MLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R+ Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 121 ITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ VV+ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + Sbjct: 301 EVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSAS 352 >gi|326799022|ref|YP_004316841.1| NusA antitermination factor [Sphingobacterium sp. 21] gi|326549786|gb|ADZ78171.1| NusA antitermination factor [Sphingobacterium sp. 21] Length = 411 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 139/421 (33%), Positives = 241/421 (57%), Gaps = 13/421 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + N ++ Q K+IDR V+SV+ + + R +GT + V +NP+ GD+ Sbjct: 1 MSNINLIDSFQEFKDF---KNIDRPTVISVLEEVFRSMIRKRFGTDENCDVIVNPDNGDL 57 Query: 61 SLFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VVE+ E+ +I L AR DP ++IG + + FGR A+ +A+Q + Sbjct: 58 EIWRTRTVVEDEFSEDDDLEIELAEARKVDPDLEIGDDFIEEITLESFGRRAILAARQTL 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 + KV E E+D + ++KD+VGEI++G V ++ +V D ++ ++ + E I + + Sbjct: 118 VSKVLELEKDEIFKKYKDRVGEIVTGEVYQIWKKETLVLDDEGNELILPKTEQIPADYFK 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD +++ +Y V P++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RA Sbjct: 178 KGDTIRAVVYKVDMMNTTPKIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ Sbjct: 238 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINFTNNISLYIQRALSPARIS 297 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + LD++ R V + +Q+SLAIGR G N++LA +LTG+ ID+ E +++ D + Sbjct: 298 SIKLDDEEKRAAVYLQSDQVSLAIGRGGHNIKLAGKLTGYEIDVYRESDEN-----DEDV 352 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F +D I G + + + + E+ +E T E+ R Sbjct: 353 DLEEFAD--EIDGWILDEFKRVGLDTAKSVLALSMDELVRRTDLEENTIQEVVQVLRSEF 410 Query: 418 E 418 E Sbjct: 411 E 411 >gi|322391042|ref|ZP_08064546.1| transcription elongation factor NusA [Streptococcus parasanguinis ATCC 903] gi|321142272|gb|EFX37746.1| transcription elongation factor NusA [Streptococcus parasanguinis ATCC 903] Length = 380 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 215/384 (55%), Gaps = 20/384 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ + Sbjct: 122 TRTITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE---- 357 Query: 351 RQKDFNERTQFFMQAINVDEIIAH 374 ++ + F + E Sbjct: 358 -FEEMEAAQETFEDQVESGEEQVD 380 >gi|325282976|ref|YP_004255517.1| NusA antitermination factor [Deinococcus proteolyticus MRP] gi|324314785|gb|ADY25900.1| NusA antitermination factor [Deinococcus proteolyticus MRP] Length = 405 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 135/333 (40%), Positives = 214/333 (64%), Gaps = 1/333 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 VA +++I+ ++ +S+ A + + V ++P++G++ + + EVVE Sbjct: 9 DALREVAQQRNINELQLIEAFEESLALAYKRNIDAEKRVEVHLDPQSGELEVLIIKEVVE 68 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP +++G + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 69 KVEDENMQISLAEALELDPGVEVGMEMEFPVEREQFSRIALQAAKQTLTQKMRETERNVV 128 Query: 131 YLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 Y E+KD+ G++++ V R + GN V+LG + ++ E I E L PG+RVK Y+ +V Sbjct: 129 YNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAIMPPREQIPGEKLTPGNRVKIYLKEV 188 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NG+V++KAVSR+ G R+K+AVFS++S++D Sbjct: 189 RKTPKGPTILASRADERLLDYLLRQEIPEVQNGVVEIKAVSREAGQRSKVAVFSNNSNVD 248 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG R+QAV EL E++D+++W D F+ NAL PA V + LDE+ G Sbjct: 249 PIGACIGHRGGRIQAVTGELGRERVDVILWDEDQREFIRNALSPAKVGPIDLDEETGTAT 308 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V V +QLSLAIG+ GQNVRLA++LTG ID+ Sbjct: 309 VTVTPDQLSLAIGKGGQNVRLAAKLTGQKIDLR 341 >gi|312867863|ref|ZP_07728068.1| transcription termination factor NusA [Streptococcus parasanguinis F0405] gi|311096618|gb|EFQ54857.1| transcription termination factor NusA [Streptococcus parasanguinis F0405] Length = 380 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 128/383 (33%), Positives = 216/383 (56%), Gaps = 20/383 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 3 KEMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVV+EV + +ISLK A + ++G + P +FGRVA Q+AKQ I++K+R+ Sbjct: 63 EVVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQAAKQTIMEKMRKQT 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++ Sbjct: 123 RTITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 183 YKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALR 292 ++D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ Sbjct: 243 NVDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIA 302 Query: 293 PAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 PA V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI ++ E Sbjct: 303 PAEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSDSE----- 357 Query: 352 QKDFNERTQFFMQAINVDEIIAH 374 ++ + F + + Sbjct: 358 FEEMEVAQETFEDQVESSQEQVD 380 >gi|239982635|ref|ZP_04705159.1| transcription elongation factor NusA [Streptomyces albus J1074] gi|291454476|ref|ZP_06593866.1| transcription elongation factor NusA [Streptomyces albus J1074] gi|291357425|gb|EFE84327.1| transcription elongation factor NusA [Streptomyces albus J1074] Length = 358 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 201/353 (56%), Gaps = 18/353 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV ++ ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRQARVRLDRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ ++ + R+ D P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 61 EDRDDLVGAVEGTEPREFDD------------TPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYPHGARLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGVRGPSVTLSRTHPGLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDDPADMVANALSPARVSKVEVVDFAARS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + ++R + Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPGEGGEAGDDRAE 341 >gi|15604816|ref|NP_219600.1| transcription elongation factor NusA [Chlamydia trachomatis D/UW-3/CX] gi|76788811|ref|YP_327897.1| transcription elongation factor NusA [Chlamydia trachomatis A/HAR-13] gi|237802529|ref|YP_002887723.1| transcription elongation factor NusA [Chlamydia trachomatis B/Jali20/OT] gi|255310899|ref|ZP_05353469.1| transcription elongation factor NusA [Chlamydia trachomatis 6276] gi|255317199|ref|ZP_05358445.1| transcription elongation factor NusA [Chlamydia trachomatis 6276s] gi|255506672|ref|ZP_05382311.1| transcription elongation factor NusA [Chlamydia trachomatis D(s)2923] gi|3328493|gb|AAC67688.1| Transcription antitermination factor [Chlamydia trachomatis D/UW-3/CX] gi|76167341|gb|AAX50349.1| N utilization substance protein A [Chlamydia trachomatis A/HAR-13] gi|231273763|emb|CAX10544.1| N utilization substance protein A [Chlamydia trachomatis B/Jali20/OT] gi|289525141|emb|CBJ14613.1| N utilization substance protein A [Chlamydia trachomatis Sweden2] gi|296434685|gb|ADH16863.1| transcription elongation factor NusA [Chlamydia trachomatis E/150] gi|296435614|gb|ADH17788.1| transcription elongation factor NusA [Chlamydia trachomatis G/9768] gi|296436537|gb|ADH18707.1| transcription elongation factor NusA [Chlamydia trachomatis G/11222] gi|296437474|gb|ADH19635.1| transcription elongation factor NusA [Chlamydia trachomatis G/11074] gi|296438402|gb|ADH20555.1| transcription elongation factor NusA [Chlamydia trachomatis E/11023] gi|297139973|gb|ADH96731.1| transcription elongation factor NusA [Chlamydia trachomatis G/9301] Length = 434 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 147/424 (34%), Positives = 236/424 (55%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 R ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|237804446|ref|YP_002888600.1| transcription elongation factor NusA [Chlamydia trachomatis B/TZ1A828/OT] gi|231272746|emb|CAX09650.1| N utilization substance protein A [Chlamydia trachomatis B/TZ1A828/OT] Length = 434 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 147/424 (34%), Positives = 236/424 (55%), Gaps = 9/424 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDEAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 R ++ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGI 420 EG Sbjct: 422 GEGK 425 >gi|333024104|ref|ZP_08452168.1| putative transcription termination factor NusA [Streptomyces sp. Tu6071] gi|332743956|gb|EGJ74397.1| putative transcription termination factor NusA [Streptomyces sp. Tu6071] Length = 369 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 194/339 (57%), Gaps = 18/339 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ V Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E E + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 KEEEADLADLG-EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V V+D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 327 >gi|325856510|ref|ZP_08172199.1| transcription termination factor NusA [Prevotella denticola CRIS 18C-A] gi|327313033|ref|YP_004328470.1| transcription termination factor NusA [Prevotella denticola F0289] gi|325483479|gb|EGC86452.1| transcription termination factor NusA [Prevotella denticola CRIS 18C-A] gi|326944462|gb|AEA20347.1| transcription termination factor NusA [Prevotella denticola F0289] Length = 421 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 143/417 (34%), Positives = 235/417 (56%), Gaps = 8/417 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R Sbjct: 10 RPNMIETFKEFKDTKSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRN 69 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ QISL AR + ++G VS+ + FGR A+ + +Q + K+ Sbjct: 70 RVVVADGEVEDENKQISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKIL 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E E D Y ++KD+VG+IISG V + V+ VD N++ ++ +DE I R+ R G+ V Sbjct: 130 ELEHDSLYNKYKDRVGQIISGEVYQTWKREVLLVDDENNELILPKDEQIPRDQYRKGETV 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I V E P+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV Sbjct: 190 RAVILRVDNENNNPKIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVE 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +D Sbjct: 250 SFDDRIDPVGACVGVRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVD 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + F Sbjct: 310 EENKKAEVYLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDE---QNAEEDIYLDEF 366 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + G ++ + +EET + + E Sbjct: 367 SD--EIDQWVIDAIKGIGLDTARQVLNAPREMLIEKADLEEETVDNVLRVLKSEFEQ 421 >gi|282881115|ref|ZP_06289802.1| transcription termination factor NusA [Prevotella timonensis CRIS 5C-B1] gi|281304919|gb|EFA96992.1| transcription termination factor NusA [Prevotella timonensis CRIS 5C-B1] Length = 421 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 141/414 (34%), Positives = 233/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKDTKNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRIV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ +I+LK A + +P +IG VS+P+ FGR A+ + +Q + KV E E Sbjct: 73 VADGEVEDENKEIALKEALEIEPDYEIGEEVSEPINFSKFGRRAILNLRQTLASKVLELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IISG V ++ V+ +D N++ ++ + E I + R G+ +++ Sbjct: 133 HDALYNKYKDRVGQIISGEVYQIWKREVLLIDDENNELILPKSEQIPSDQYRKGETIRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPVFLERLLEAEVPEINDGLISIKRIARMPGERAKIAVESYD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID+V ++ + V AL PA ++ + +DE+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVVNYTSNIKLLVQRALSPAHISSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E D+ D + F Sbjct: 313 HKAEVYLKPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVSDA---DADEDIYLDEFDD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G +++ + +EET + + E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNLIKVLKAEFEQ 421 >gi|260910869|ref|ZP_05917513.1| N utilization substance protein A [Prevotella sp. oral taxon 472 str. F0295] gi|260635020|gb|EEX53066.1| N utilization substance protein A [Prevotella sp. oral taxon 472 str. F0295] Length = 422 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 140/418 (33%), Positives = 232/418 (55%), Gaps = 8/418 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R Sbjct: 9 NILSMVDTFKEFKDTKNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNPDKGDFEIYR 68 Query: 65 LLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV EVE+ QI+L A+ + ++G V++ + FGR A+ + +Q + K+ Sbjct: 69 NRMVVADGEVEDENKQIALTEAQKIEHDYEVGEEVTERVDFAKFGRRAILTLRQTLASKI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDR 181 E E D Y ++KD+VG++I+G V +V V IVD N++ ++ + E I + R G+ Sbjct: 129 LELEHDSLYNKYKDRVGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGET 188 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV Sbjct: 189 IRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKRIARMPGERAKIAV 248 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVG+RGSRV +V EL +E ID++ ++ ++ F+ AL PA V+ + + Sbjct: 249 ESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVINYTANTKLFIQRALSPAQVSSINI 308 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + D + Sbjct: 309 DEENRKAEVFLHPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVAEGE---ADEDIYLDE 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F VD+ + + + G + + + +EET + R E Sbjct: 366 FSD--EVDQWVIDAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDSLLRVLRAEFEQ 421 >gi|332830404|gb|EGK03032.1| transcription termination factor NusA [Dysgonomonas gadei ATCC BAA-286] Length = 420 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 143/419 (34%), Positives = 242/419 (57%), Gaps = 12/419 (2%) Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E++ + D + E K+IDR ++SV+ DS + L+G+ + V INP+ GD+ + Sbjct: 3 KKEVISMIDTFSEFKELKNIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEI 62 Query: 63 FRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R +VE E+E+ QISL AR D ++G V+D + DFGR A+ + +Q + Sbjct: 63 WRNRTIVEDSELEDENTQISLTEARKIDEDFEVGEDVTDEVFFEDFGRRAILNLRQTLTS 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPG 179 K+ E +++ Y +K+K+GEI+SG V ++ +++ D + ++ + E I + R G Sbjct: 123 KILELQKEGLYNRYKEKIGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + V++ + V + P+++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+ Sbjct: 183 EHVRAVVERVENKNNNPKIILSRTSPVFLERLLEIEVPEINDGLITIKNIARIPGERAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++P+ + ++ AL PA +T V Sbjct: 243 AVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDIINYTPNMSLYIQRALSPAKITSV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 L+E+ R EV++ E++SLAIG+ G N++LAS LTG+TID+ + +D +E Sbjct: 303 KLNEEEKRAEVLLRPEEVSLAIGKGGFNIKLASMLTGYTIDVYRDIDDFDEEDIYLDEFR 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D + L G + + ++ +E+T EI R + Sbjct: 363 D------EIDGWVIDQLKKIGCVTAKNVLAADRDKLIQEADLEEDTVDEILDILRAEFD 415 >gi|325269683|ref|ZP_08136296.1| N utilization substance protein A [Prevotella multiformis DSM 16608] gi|324988051|gb|EGC20021.1| N utilization substance protein A [Prevotella multiformis DSM 16608] Length = 421 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 142/417 (34%), Positives = 234/417 (56%), Gaps = 8/417 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R Sbjct: 10 RPNMIETFKEFKDTKSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRN 69 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ QISL AR + ++G VS+ + FGR A+ + +Q + K+ Sbjct: 70 RVVVADGEVEDENKQISLTDARKIEDDYEVGEDVSEEVDFNKFGRRAILNLRQTLASKIL 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E E D Y ++KD+VG+IISG V + V+ VD N++ ++ + E I R+ R G+ V Sbjct: 130 ELEHDSLYNKYKDRVGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETV 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I V E P+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV Sbjct: 190 RAVILRVDNENNNPKIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVE 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +D Sbjct: 250 SFDDRIDPVGACVGVRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVD 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + F Sbjct: 310 EENKKAEVYLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDE---QNAEEDIYLDEF 366 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + G ++ + +EET + + E Sbjct: 367 SD--EIDQWVIDAIKGIGLDTARQVLNAPREMLIEKADLEEETVDNVLRVLKSEFEQ 421 >gi|326333613|ref|ZP_08199851.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] gi|325948594|gb|EGD40696.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] Length = 325 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 130/339 (38%), Positives = 199/339 (58%), Gaps = 24/339 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + E+ I DV++ + + A G + RV+++ +TG + + Sbjct: 5 MSILRMLEREREISLDVLVEAIEQGLLTAYHKTEGAQTKARVDLDRKTGHVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D ++ G D P FGR+A +AKQ+++Q++R+AE D Sbjct: 59 --------------ASEVDDEGNVVGEYDD--TPEGFGRIAATTAKQIVLQRLRDAEDDV 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 ++ EF K G+I+SG +++ +V+VDLG +GVI E + E+ G R+K+ + Sbjct: 103 KFGEFSGKEGDILSGVIQQGRNPDDVLVDLGRLEGVIPLSERVPGEDYGHGTRIKALVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGPQ+ LSR+HP + KLF EVPEI +G V++ A++R+ G R K+AV S+ + Sbjct: 163 VRKGMRGPQITLSRSHPNLVKKLFSFEVPEIADGTVEIAAIAREAGHRTKIAVKSTVPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V++EL+ EKIDIV WS D V +AL PA V+ V ++DE Sbjct: 223 NAKGACIGPMGQRVRQVMSELQGEKIDIVDWSEDPKVLVASALSPARVSSVEIIDEATKS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++EE Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDEE 321 >gi|94985335|ref|YP_604699.1| transcription elongation factor NusA [Deinococcus geothermalis DSM 11300] gi|94555616|gb|ABF45530.1| NusA antitermination factor [Deinococcus geothermalis DSM 11300] Length = 395 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 136/386 (35%), Positives = 223/386 (57%), Gaps = 5/386 (1%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 VA ++I+ ++ S+ +A + V ++P +G++ + + EVVE Sbjct: 10 DALREVAQARNINELQLIEAFEQSLAQAYSRNVEPDRRVEVHLDPVSGELEVLIVREVVE 69 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 70 KVEDENLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETERNVV 129 Query: 131 YLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 Y E+KD+ G++++ V R + GN V+LG + ++ E I E L PG+RVK Y+ +V Sbjct: 130 YNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLVPGNRVKIYLKEV 189 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NGIV++KA++R+ G R+K+AV+S + ++D Sbjct: 190 RKTPKGPTILASRADERLLEYLLRQEIPEVANGIVEIKAIAREAGQRSKVAVYSHNPNVD 249 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D Sbjct: 250 PIGACIGHRGNRIQAVTGELGRERVDVILWDANARDFIRNALSPAKVGLIEVRPDTREAT 309 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ E + + D + + N Sbjct: 310 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLR---ETAAIQDLDAAMQQALQEEQGNTG 366 Query: 370 E-IIAHLLVAEGFADVEELACVKISE 394 A F D + +A + Sbjct: 367 PSSAAASAFDALFRDSKSVATASPDD 392 >gi|296877069|ref|ZP_06901110.1| transcription termination factor NusA [Streptococcus parasanguinis ATCC 15912] gi|296431930|gb|EFH17736.1| transcription termination factor NusA [Streptococcus parasanguinis ATCC 15912] Length = 380 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 215/384 (55%), Gaps = 20/384 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ + Sbjct: 122 TRTITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ + ++ +E ID++ W PD A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKITSKFHPARYDQKLERMVPTEENIDVIEWVPDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASE---- 357 Query: 351 RQKDFNERTQFFMQAINVDEIIAH 374 ++ + F + E Sbjct: 358 -FEEMEAAQETFEDQVESGEEQVD 380 >gi|15806798|ref|NP_295520.1| transcription elongation factor NusA [Deinococcus radiodurans R1] gi|6459575|gb|AAF11353.1|AE002021_2 N-utilization substance protein A [Deinococcus radiodurans R1] Length = 401 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 140/386 (36%), Positives = 225/386 (58%), Gaps = 3/386 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + VA ++I+ ++ S+Q+A I V ++P++G + + + EVVE Sbjct: 14 EALREVAQARNINELQLIEAFEQSLQQAYVRNVEPDKRIEVHLDPQSGVLEVLIVREVVE 73 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 74 KVEDEHMQISLADALELDPGVEIGMEMEFPVDQEMFSRIALQAAKQTLTQKMRETERNVV 133 Query: 131 YLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+KD+ G++++ V R + GN V+LG + ++ E I E L PG RVK Y+ +V Sbjct: 134 FNEYKDREGQVLNAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGGRVKIYLKEV 193 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS +S++D Sbjct: 194 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNSNVD 253 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + +D Sbjct: 254 PIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGPIEVQQDSRDAT 313 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ S + Q + Sbjct: 314 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAISDLDAAMQQALEE--EQQGGGN 371 Query: 370 EIIAHLLVAEGFADVEELACVKISEI 395 E A F D + +A ++ Sbjct: 372 ENAAQSAFDALFKDSKSVATASPDDV 397 >gi|145224621|ref|YP_001135299.1| transcription elongation factor NusA [Mycobacterium gilvum PYR-GCK] gi|315444953|ref|YP_004077832.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] gi|145217107|gb|ABP46511.1| NusA antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315263256|gb|ADT99997.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] Length = 353 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 197/348 (56%), Gaps = 31/348 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G +D ++I+ +TG + + Sbjct: 5 MAALHAIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR D ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------ARQTDEDGNVLHEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF + G+I++G ++R N V+V +G S+GVI E + E GDR Sbjct: 103 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVARGAREPVITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 TSRAPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +DE VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ D Sbjct: 283 IDEAARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDADK 330 >gi|291298941|ref|YP_003510219.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290568161|gb|ADD41126.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 347 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 134/341 (39%), Positives = 199/341 (58%), Gaps = 27/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L ++ +E+ I ++ + ++ A R S RVE+N ETG +++ Sbjct: 5 LVALRSLEHERDIPFHTIIDAIESALLTAYRHTPDAQSHARVEVNRETGTVTV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P DFGR+A +AKQVI+Q++REA D Sbjct: 58 -------------RAREVDAEGNVVREWDD--TPDDFGRIAAMTAKQVIMQRLREATDDV 102 Query: 130 QYLEFKDKVGEIISGTVKRVE----YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF G++++G ++ E G V+VDLG + ++ E + EN G R+++ Sbjct: 103 NFGEFASLEGDVVTGVIQAHEGASEKGTVMVDLGKIEAMLPHVEQVPGENYSHGRRLRAA 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ +SR+HP + KLF EVPEI +G+V++ AV+R+ G R K+AV ++ Sbjct: 163 VVQVSRGPRGPQITVSRSHPNLVKKLFAAEVPEIADGLVEIAAVAREAGHRTKIAVRATV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 + ++ GAC+G GSRV+AV++EL EKIDI+ +S D ATFV NAL P+ V V VLD D Sbjct: 223 ADLNAKGACIGPMGSRVRAVMSELDGEKIDIIDYSEDPATFVGNALSPSKVVSVEVLDPD 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ Sbjct: 283 DKVARVVVPDFQLSLAIGREGQNARLAARLTGWRIDIKSDA 323 >gi|288574932|ref|ZP_06393289.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570673|gb|EFC92230.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 366 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 219/364 (60%), Gaps = 8/364 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + E+++ + ++L + ++ A + + V+I+ ETGDIS+ + Sbjct: 6 DFIRALMQLTEERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIMEIRR 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVV--SDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+EV+N +++ + A P + G VV + P FGR+A Q+A+QVIIQ++++ Sbjct: 66 VVDEVKNSDAELTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQRLKD 125 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 AER+ + EF ++VG++++G V + E ++V + ++ ++ R+E I+ E G R+K Sbjct: 126 AEREIIFNEFSERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGSRMK 185 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DVR+ RGP++++SRTHP + +L +E+PEI +G+V++ + R+ G+RAK+AV + Sbjct: 186 FYLLDVRQTTRGPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVAVTT 245 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302 D ++DPVGACVG GSR++ + EL EKID+V+WS D ++ N L PA V +V + Sbjct: 246 LDPNVDPVGACVGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVEPIL 305 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E +V +QLSLAIG+ GQNVRLA++LTGW +DI E + F Sbjct: 306 EQEKSAKVFARPDQLSLAIGKAGQNVRLAARLTGWKVDINPLE---APEKDSMPTLQDLF 362 Query: 363 MQAI 366 Sbjct: 363 EDIP 366 >gi|300727483|ref|ZP_07060874.1| transcription termination factor NusA [Prevotella bryantii B14] gi|299775186|gb|EFI71787.1| transcription termination factor NusA [Prevotella bryantii B14] Length = 420 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 138/413 (33%), Positives = 231/413 (55%), Gaps = 8/413 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MISTFKEFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V E+E+ QISL AR +P ++G VS+ + FGR AV + +Q + K+ E E Sbjct: 73 VADGEIEDENKQISLTEARKIEPDYEVGEDVSEKVDFSKFGRRAVLNLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IISG V ++ V IVD N++ ++ + E I + R G+ V++ Sbjct: 133 HDSLYNKYKDRVGQIISGEVYQIWKREVLIVDDENNELILPKSEQIPADQYRKGETVRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 IARVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + ++E+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPAKVSSININEEE 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E +++ + + F Sbjct: 313 KKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVFREIDENE---AEDDIYLDEFSD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D+ + + G ++ + +EET + + E Sbjct: 369 -EIDQWVIDAIKGIGLDTARQVLNAPREMLVEKADLEEETVDNVINILKAEFE 420 >gi|328885406|emb|CCA58645.1| Transcription termination protein NusA [Streptomyces venezuelae ATCC 10712] Length = 331 Score = 398 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 130/346 (37%), Positives = 199/346 (57%), Gaps = 22/346 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A+EK I D+++ + ++ A RVE++ TG ++++ Sbjct: 5 VKLLKGLAHEKEISFDLLVEAIESALLIAYHRTPDARRHARVELDRVTGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + + +D D P DFGR+A +A+QVI Q++R+AE D Sbjct: 61 ---EDPSELEEGQEPKDFDD------------TPSDFGRIAASTARQVIQQRLRDAENDV 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + NV+V L + ++ E + E G R+++Y+ Sbjct: 106 TFGEYARREGDVVAGVVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYSHGLRLRTYVV 165 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 166 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 225 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 LNPKGACIGPMGSRVRNVMAELLGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAAR 285 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S + Sbjct: 286 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPSGPQD 331 >gi|318081083|ref|ZP_07988415.1| transcription elongation factor NusA [Streptomyces sp. SA3_actF] Length = 343 Score = 398 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 126/339 (37%), Positives = 194/339 (57%), Gaps = 18/339 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ + E Sbjct: 1 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-VKEEA 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++ + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 ADLADLG-----EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 105 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 165 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V V+D Sbjct: 225 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 323 >gi|108799047|ref|YP_639244.1| transcription elongation factor NusA [Mycobacterium sp. MCS] gi|119868162|ref|YP_938114.1| transcription elongation factor NusA [Mycobacterium sp. KMS] gi|126434650|ref|YP_001070341.1| transcription elongation factor NusA [Mycobacterium sp. JLS] gi|108769466|gb|ABG08188.1| NusA antitermination factor [Mycobacterium sp. MCS] gi|119694251|gb|ABL91324.1| NusA antitermination factor [Mycobacterium sp. KMS] gi|126234450|gb|ABN97850.1| NusA antitermination factor [Mycobacterium sp. JLS] Length = 347 Score = 398 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 132/356 (37%), Positives = 199/356 (55%), Gaps = 31/356 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G +D R++I+ ++G + + Sbjct: 5 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------ARETDADGNLIQEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF + G+I++G ++R N V+V +G ++GVI E + E GDR Sbjct: 103 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V + AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 +DE V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + D + Sbjct: 283 IDEQTRAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSD 338 >gi|255027177|ref|ZP_05299163.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-003] Length = 301 Score = 398 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 129/270 (47%), Positives = 187/270 (69%) Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF Sbjct: 1 RLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFI 60 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ V + +G Sbjct: 61 DREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKG 120 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 PQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ +DPVGACV Sbjct: 121 PQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEEVDPVGACV 180 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 G +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E VIVP Sbjct: 181 GPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQATTVIVPDY 240 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 241 QLSLAIGKRGQNARLAAKLTGWKIDIKSET 270 >gi|291541940|emb|CBL15050.1| transcription termination factor NusA [Ruminococcus bromii L2-63] Length = 386 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 219/370 (59%), Gaps = 5/370 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L + EK I D +L + +I A ++ YG ++ +++PE + Sbjct: 3 NKDLFEALRTFEKEKGIPMDYMLQNIEKAISVACKNYYGGNENVVFKVDPEKNSFDAKLV 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+EV + +++++ A+ + +G + P+ P G +V SA+ VI Q +R Sbjct: 63 KTVVDEVFDPNFEVTVEEAQQINKRKKFIVGDEIEVPIDPKHLGWTSVSSARNVIRQGIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + E+ + +EF+ K+GEI++ TV+R++ G + +G S+ + + E + ++L+ GD Sbjct: 123 QGEKGQTLIEFQSKLGEIVTATVERIDPKSGVATIKIGKSEATLPKSEQLGHDDLKEGDH 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI DV+ +RGP ++SRTHP + +LF EVPEIY+G+V++K++SR+ GSR K+AV Sbjct: 183 IKVYIADVKDNERGPHAIISRTHPGLVKRLFEQEVPEIYDGVVEIKSISREAGSRTKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +SS+ +D +G+C+G +G+RV +V EL EKIDIV++S D ++ AL PA V KV + Sbjct: 243 YSSNPDVDAIGSCIGNKGARVNKIVEELGGEKIDIVLYSDDPEKYISAALSPASVCKVEI 302 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ VP QLSLAIG +GQN RLA++LTGW IDI E + D + + Sbjct: 303 TDEETKSCRATVPDGQLSLAIGNKGQNARLAARLTGWRIDIRPESGFYGEDEDDEPKTEE 362 Query: 361 FFMQAINVDE 370 +++DE Sbjct: 363 KSEDVLDLDE 372 >gi|189465081|ref|ZP_03013866.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM 17393] gi|189437355|gb|EDV06340.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM 17393] Length = 440 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 138/413 (33%), Positives = 240/413 (58%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGNIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ +D + Sbjct: 302 SIRLNEEERKAEVFLRPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAV---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +D + + A G + + + +EET E+ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVL 409 >gi|271963647|ref|YP_003337843.1| transcription elongation factor NusA [Streptosporangium roseum DSM 43021] gi|270506822|gb|ACZ85100.1| transcription elongation factor NusA [Streptosporangium roseum DSM 43021] Length = 331 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 125/339 (36%), Positives = 202/339 (59%), Gaps = 23/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I D+V+ + D++ A G + R E++ ++G +++F Sbjct: 1 MSVLRSLEREKDISFDLVVKAIEDALLIAYFRSEGAAAKARAELDRQSGHVTIFA----- 55 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+++ + ++ R+ D P +F R+A +AKQVI+Q++R+AE + Sbjct: 56 AEIDDESGEVL----REFDD------------TPGNFSRIAATTAKQVILQQLRDAEDEI 99 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + GE+++G +++ + V+VDLG + V+ +E + E G+R++ Y+ Sbjct: 100 NFGEFASREGELVAGVIQQGKDPRVVLVDLGKIEAVLPHNEQVPGEEYVHGERLRCYVVQ 159 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V++ +GP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 160 VKKGHKGPSVTLSRTHPGLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGV 219 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G GSRV+ V+ EL EKIDI+ WS D A FV NAL P+ V+ V V+D + Sbjct: 220 NAKGACIGPMGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPSRVSHVEVIDAEGRA 279 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 280 ARVTVPDYQLSLAIGKEGQNARLANRLTGWRIDIRPDTQ 318 >gi|269956009|ref|YP_003325798.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269304690|gb|ACZ30240.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 344 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 202/339 (59%), Gaps = 15/339 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV- 68 + + E+ + DV++ + ++ A + RVE++ TG ++++ E Sbjct: 5 MTTLRLLERERDLSLDVLVEAIESALLHAYHRTPDAYAKARVEVDRRTGHVTVWAREEFR 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + + + P +++G P DFGR+A +A+QVI+Q++R+AE D Sbjct: 65 TPDPSDP----------EGRPLVELGPEFD--HTPQDFGRIATATARQVIVQRLRDAEDD 112 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + F+ K GE+I+G +++ + V+VD+G ++ V+ E + E G+R+++Y+ Sbjct: 113 QVLGLFRGKEGEVIAGVIQQGRDPRVVLVDVGGTEAVLPPHEQVPTEEYVHGERLRAYVV 172 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V R +G QV LSRTHP + KLF +EVPE+ +G V++ A++R+ G R+K+AV S Sbjct: 173 EVARGAKGAQVTLSRTHPGLVRKLFELEVPEVADGSVEITAIAREAGHRSKVAVRSRVQG 232 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++ GAC+G G+RV+AV+ EL EKIDIV S D A FV NAL PA VT V V+DED Sbjct: 233 LNAKGACIGPMGARVRAVMAELHGEKIDIVDHSDDPARFVANALSPARVTSVTVVDEDAR 292 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 293 AARAVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDE 331 >gi|189459826|ref|ZP_03008611.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136] gi|189433436|gb|EDV02421.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136] Length = 418 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 136/403 (33%), Positives = 230/403 (57%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV +E+ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADDELTNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG II+ V ++ +++ D ++ ++ + E I + R G+ V++ + V + P Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGNELLLPKTEQIPSDFYRKGETVRAVVARVDNKNNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIILSRTSPMFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDERIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSR+ +V ELR+E ID++ ++ + FV AL PA V+ +++ E+ + EV + E+ Sbjct: 261 VKGSRIHGIVRELRNENIDVINYTSNIQLFVQRALSPAKVSSIIMHEEEKKAEVYLKPEE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIG+ G N++LAS LT +TID+ E +++ D + F +DE + + + Sbjct: 321 VSLAIGKGGMNIKLASMLTEYTIDVYRELDENAT---DEDIYLDEFKD--EIDEWVINAI 375 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 G + + + +E T ++ R E Sbjct: 376 KGIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILRAEFEE 418 >gi|306832818|ref|ZP_07465953.1| transcription termination factor NusA [Streptococcus bovis ATCC 700338] gi|304425053|gb|EFM28184.1| transcription termination factor NusA [Streptococcus bovis ATCC 700338] Length = 399 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 213/380 (56%), Gaps = 15/380 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + Sbjct: 5 SKEMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 65 REVVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 125 IREVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 185 VYKVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 245 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGIEVPIEENIDVIQWVEDPAEFIYNAI 304 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 305 APAEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEAL 364 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 365 EAEHEANAAVTQEEVAPVEE 384 >gi|255692953|ref|ZP_05416628.1| transcription termination factor NusA [Bacteroides finegoldii DSM 17565] gi|260621264|gb|EEX44135.1| transcription termination factor NusA [Bacteroides finegoldii DSM 17565] Length = 421 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 140/424 (33%), Positives = 241/424 (56%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S+ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDESV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EESE 420 >gi|237716685|ref|ZP_04547166.1| transcription elongation factor NusA [Bacteroides sp. D1] gi|262405461|ref|ZP_06082011.1| transcription termination factor NusA [Bacteroides sp. 2_1_22] gi|293370440|ref|ZP_06616993.1| transcription termination factor NusA [Bacteroides ovatus SD CMC 3f] gi|294646240|ref|ZP_06723894.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a] gi|294809092|ref|ZP_06767810.1| transcription termination factor NusA [Bacteroides xylanisolvens SD CC 1b] gi|229442668|gb|EEO48459.1| transcription elongation factor NusA [Bacteroides sp. D1] gi|262356336|gb|EEZ05426.1| transcription termination factor NusA [Bacteroides sp. 2_1_22] gi|292634432|gb|EFF52968.1| transcription termination factor NusA [Bacteroides ovatus SD CMC 3f] gi|292638458|gb|EFF56822.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a] gi|294443646|gb|EFG12395.1| transcription termination factor NusA [Bacteroides xylanisolvens SD CC 1b] Length = 424 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 139/413 (33%), Positives = 237/413 (57%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S+ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDESV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +D + + A G + + + +EET E+ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409 >gi|297191724|ref|ZP_06909122.1| transcription elongation factor NusA [Streptomyces pristinaespiralis ATCC 25486] gi|197721420|gb|EDY65328.1| transcription elongation factor NusA [Streptomyces pristinaespiralis ATCC 25486] Length = 331 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 127/340 (37%), Positives = 195/340 (57%), Gaps = 22/340 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A EK I D+++ + ++ A G+ RV ++ TG ++++ Sbjct: 5 VKLLKGLAQEKEIGFDLLVEAIESALLIAYHRTEGSRRHARVVLDRNTGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P DFGR+A +A+QVI Q++R+AE D Sbjct: 61 ---EDPA---DLEEGQEPK---------EFDDTPSDFGRIAATTARQVIQQRLRDAENDV 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + NV+V L + ++ E + E G R+++Y+ Sbjct: 106 TFGEYARREGDVVAGMVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYTHGLRLRTYVV 165 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 166 RVARGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 225 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++P GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV ++D Sbjct: 226 LNPKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEIVDLGAR 285 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 325 >gi|224543310|ref|ZP_03683849.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM 15897] gi|224523843|gb|EEF92948.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 135/340 (39%), Positives = 212/340 (62%), Gaps = 2/340 (0%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVE 70 + + +K +D +V+ + +++ K+ + Y GT S + I+ + G I +F VV+ Sbjct: 11 ALENLIEDKGLDSAIVIEALTEALAKSYKKNYCGTESIVDCRIDGD-GQIRIFITHHVVD 69 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +V + + S++ A++ DP +G V + +FGR+A KQ++ QK+REAE++ Sbjct: 70 DVNDEDYEYSIEEAQEIDPKYQVGDEVVEEADISEFGRLAAIQTKQLLRQKIREAEKEAL 129 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 Y E+ +K+ EII+GTV RVE I+++G + ++ + I E L G+ VK Y+ +V Sbjct: 130 YNEYINKLDEIINGTVDRVEERFAIINIGKTGALLSSKDQIPGETLVEGEHVKVYVSEVE 189 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +G + +SRTH + +LF MEVPEI+ G V++K+VSR+ G R+K+AV++++ IDP Sbjct: 190 RTTKGTHISVSRTHEGLVKRLFEMEVPEIFEGTVEIKSVSREAGERSKIAVYTANPDIDP 249 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +GACVG +G+RV+ VV EL E IDI+ WS D TF+ +AL PA V +V L+ V Sbjct: 250 IGACVGPKGNRVRNVVEELNGEMIDIIEWSDDPVTFISHALSPAKVERVKLNHAKNSALV 309 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +VP +QLSLAIG+RGQN RLA +LT W IDI + E Sbjct: 310 VVPDDQLSLAIGKRGQNARLAVKLTNWKIDIKSVSEILEE 349 >gi|304383857|ref|ZP_07366314.1| transcription termination factor NusA [Prevotella marshii DSM 16973] gi|304334935|gb|EFM01208.1| transcription termination factor NusA [Prevotella marshii DSM 16973] Length = 420 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 147/413 (35%), Positives = 232/413 (56%), Gaps = 8/413 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R V Sbjct: 13 MIETFKEFKDTKNIDRTTLVSVLEESFRNVIAKLFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EV++ +ISL A+ + +IG VS+P+ FGR AV + +Q + KV E E Sbjct: 73 VADGEVQDENKEISLSEAQKIEKDYEIGEEVSEPVDFAKFGRRAVLNLRQTLASKVLELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IISG V +V V IVD N++ ++ + E I + R G+ +++ Sbjct: 133 HDSLYNKYKDRVGQIISGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGETIRTV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ V+ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLQRLLEAEVPEIGDGLITVRKIARIPGERAKVAVESYD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG+RGSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ Sbjct: 253 ERIDPVGACVGVRGSRVHGIVYELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E ED D + F Sbjct: 313 RKAEVFLKPEEVSLAIGRSGMNIKLASMLTEYTIDVFREIEDGDI---DEDIYLDEFSD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D+ I + A G + + + +EET + + E Sbjct: 369 -EIDKWIIDSIKAIGLDTAKAVINAPREMLVEKADLEEETVDNVLRILKAEFE 420 >gi|297562526|ref|YP_003681500.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846974|gb|ADH68994.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 337 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 131/347 (37%), Positives = 197/347 (56%), Gaps = 24/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I ++V + D++ A G RVE+N TG ++++ Sbjct: 1 MSVLRSLEREKDISVELVAKAIEDALLIAYHREEGPEKRARVELNRSTGHVTVW------ 54 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 + D + G P FGR+A +AKQVI+Q++R+AE + Sbjct: 55 --------------VAETDEDGESVGEFDG--TPTGFGRIATSTAKQVILQRLRDAEDEL 98 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF + +I+SG +++ + NV+VDLG + V+ E + E G+R+++Y+ Sbjct: 99 TLGEFAGREHDIVSGIIQQGKDPRNVLVDLGKIEAVLPPQEQVPTETYTHGERLRAYVVQ 158 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + Sbjct: 159 VRKGHRGPSVTLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVHSNRGGV 218 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G GSRV+ V+ EL EKIDIV +S D A FV NAL PA V V +LD Sbjct: 219 NAKGACIGPLGSRVRNVMAELHGEKIDIVDYSEDPAVFVANALSPARVNSVEILDMASRV 278 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VIVP Q SLAIG+ GQN RLA++LTGW IDI ++ E + +++ Sbjct: 279 ARVIVPDYQQSLAIGKEGQNARLAARLTGWRIDIRSDAEPAGEPERE 325 >gi|306830060|ref|ZP_07463246.1| transcription termination factor NusA [Streptococcus mitis ATCC 6249] gi|304427773|gb|EFM30867.1| transcription termination factor NusA [Streptococcus mitis ATCC 6249] Length = 378 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 132/389 (33%), Positives = 220/389 (56%), Gaps = 27/389 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAE 379 +A VD +A L+ E Sbjct: 362 E------------EAGQVDYAVADELIEE 378 >gi|222153583|ref|YP_002562760.1| transcription elongation factor NusA [Streptococcus uberis 0140J] gi|222114396|emb|CAR43159.1| putative N utilization substance protein A [Streptococcus uberis 0140J] Length = 382 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 130/381 (34%), Positives = 219/381 (57%), Gaps = 15/381 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + Sbjct: 2 SKEMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 IREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRFDAKTGIEIPVEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + + Sbjct: 302 APAEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYEAS 361 Query: 351 RQKDFNERTQFFMQAINVDEI 371 + +Q + I+ +E Sbjct: 362 EAALADLDSQEAEEVISNEEE 382 >gi|255530056|ref|YP_003090428.1| transcription elongation factor NusA [Pedobacter heparinus DSM 2366] gi|255343040|gb|ACU02366.1| transcription termination factor NusA [Pedobacter heparinus DSM 2366] Length = 411 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 138/421 (32%), Positives = 240/421 (57%), Gaps = 13/421 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + N ++ Q K+IDR V+SV+ + + R YGT + V +NP+ GD+ Sbjct: 1 MSNINLIDSFQEFKDF---KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDL 57 Query: 61 SLFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R +V+E+ E+ +I L + DP +++G + + FGR A+ +A+Q + Sbjct: 58 EIWRTRKVMEDGFSEDDDLEIELAEVKQLDPDMEVGDDYIEQITLESFGRRAILAARQTL 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 + KV E E+D + ++KD+VGEI++G V +V +V D ++ ++ + E I + + Sbjct: 118 VSKVLELEKDEIFKKYKDRVGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFK 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD V++ I V P++++SR P+F+ +LF +EVPEI++G++ +K + R+PG RA Sbjct: 178 KGDTVRAVILKVDMVNATPKIIISRIAPEFLQRLFEIEVPEIFDGLITIKKIVREPGERA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T Sbjct: 238 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKIT 297 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + LD++ V + +Q+SLAIGR G N++LA +LTG+ ID+ E ++D + Sbjct: 298 SIKLDDETKHASVYLKPDQVSLAIGRGGHNIKLAGKLTGYEIDVYREA-----GEEDEDV 352 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F +D I L A G + + + + E+ +EET E+ + Sbjct: 353 DIEEFSD--EIDSWIIDELKAIGCDTAKSVLALSVDELVKRTDLEEETIKEVMSILKSEF 410 Query: 418 E 418 E Sbjct: 411 E 411 >gi|224025208|ref|ZP_03643574.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM 18228] gi|224018444|gb|EEF76442.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 139/422 (32%), Positives = 236/422 (55%), Gaps = 11/422 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTLVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL AR D S +IG V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNSQISLSQARQIDASYEIGEEVTDEVIFEKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG +IS V ++ +++ D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSLYNKYIDKVGTVISAEVYQIWKKEILLLDDEGNELLLPKTEQIPGDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V P+++LSRT P F+ +LF EVPEI +G++ ++ ++R PG RA Sbjct: 182 KGETARAVVARVDNPGNNPKIILSRTSPMFLQRLFEQEVPEIADGLITIRRIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+ ED + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S D + Sbjct: 302 SIVMHEDEKKAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYRELDESAT---DEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +DE + + + G + + + +E T ++ + Sbjct: 359 YLDEFKD--EIDEWVINAIKGIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILKAEF 416 Query: 418 EG 419 E Sbjct: 417 EA 418 >gi|171778095|ref|ZP_02919352.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283077|gb|EDT48501.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 397 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 127/355 (35%), Positives = 207/355 (58%), Gaps = 15/355 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + Sbjct: 5 SKEMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 65 REVVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 125 IREVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVY 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 185 VYKVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 245 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAI 304 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 PA V V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + Sbjct: 305 APAEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSAS 359 >gi|53711553|ref|YP_097545.1| transcription elongation factor NusA [Bacteroides fragilis YCH46] gi|60679812|ref|YP_209956.1| transcription elongation factor NusA [Bacteroides fragilis NCTC 9343] gi|253564386|ref|ZP_04841843.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5] gi|265764945|ref|ZP_06093220.1| transcription termination factor NusA [Bacteroides sp. 2_1_16] gi|52214418|dbj|BAD47011.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] gi|60491246|emb|CAH05994.1| putative N utilization substance protein A [Bacteroides fragilis NCTC 9343] gi|251948162|gb|EES88444.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5] gi|263254329|gb|EEZ25763.1| transcription termination factor NusA [Bacteroides sp. 2_1_16] gi|301161335|emb|CBW20875.1| putative N utilization substance protein A [Bacteroides fragilis 638R] Length = 420 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 139/424 (32%), Positives = 241/424 (56%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++ +D + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENA---QDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKSVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EDNE 420 >gi|320449995|ref|YP_004202091.1| transcription termination factor NusA [Thermus scotoductus SA-01] gi|320150164|gb|ADW21542.1| transcription termination factor NusA [Thermus scotoductus SA-01] Length = 387 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 135/351 (38%), Positives = 212/351 (60%), Gaps = 11/351 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----------YGTMSDIRVEINP 55 E + +A E+ + + VL ++++KA G ++ V I+P Sbjct: 2 NREFIDAMQQLALERGVTTEEVLEAFKEALRKAYIKRQKGYRKEEIDAGKGPEVDVYIDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +TG I + + VVE+VE+ +I+L A DP + +G + P+ P R+A+Q + Sbjct: 62 QTGRIEMVEVRRVVEKVEDPDKEIALSEALQYDPEVQVGDEMEFPIDPEGLSRMAIQDLR 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + + E I E Sbjct: 122 QILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPKSEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+PG Sbjct: 182 RYYPGQRLKVYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV + + ++DP+GAC+G +G R+QAV EL EK+DI++W+ D F+ NAL PA Sbjct: 242 RRSKVAVMTHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWAKDPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + L+ D + V V K+Q SLAIG GQNVRLAS+LTG+ I E Sbjct: 302 QVGSIELEPDGQKARVKVTKDQHSLAIGTGGQNVRLASKLTGYEIHFEEAE 352 >gi|183981905|ref|YP_001850196.1| N utilization substance protein a NusA [Mycobacterium marinum M] gi|183175231|gb|ACC40341.1| N utilization substance protein a NusA [Mycobacterium marinum M] Length = 347 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 130/361 (36%), Positives = 199/361 (55%), Gaps = 31/361 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRG 342 Query: 361 F 361 Sbjct: 343 L 343 >gi|320547937|ref|ZP_08042220.1| transcription termination factor NusA [Streptococcus equinus ATCC 9812] gi|320447477|gb|EFW88237.1| transcription termination factor NusA [Streptococcus equinus ATCC 9812] Length = 389 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 128/368 (34%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + Sbjct: 5 SKEMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 65 REVVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 125 IREVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVY 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 185 VYKVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 245 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAI 304 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 305 APAEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEAL 364 Query: 351 RQKDFNER 358 + + Sbjct: 365 EAERAEQV 372 >gi|24378911|ref|NP_720866.1| transcription elongation factor NusA [Streptococcus mutans UA159] gi|290581068|ref|YP_003485460.1| putative transcription factor [Streptococcus mutans NN2025] gi|24376794|gb|AAN58172.1|AE014888_10 putative transcription factor NusA [Streptococcus mutans UA159] gi|254997967|dbj|BAH88568.1| putative transcription factor [Streptococcus mutans NN2025] Length = 397 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 130/387 (33%), Positives = 218/387 (56%), Gaps = 20/387 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E + ++GD +F + E Sbjct: 4 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQAESAEIEFDEKSGDFKVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISTAYELGDKIRFEESPKEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ EI++GTV+R + + V+LG + + R + + E DR++ Y+Y Sbjct: 124 EVTFNEYKEHEREIMTGTVERFDNRFIYVNLGTIEAQLSRQDQVPGETFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRP 293 +D +G VG +G+ ++ V ++ +E +D++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRKGANIKKVTSKFHPKRFDQKTGLWVPMEENVDVIEWVDDPAEFIYNAVAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVLFDEEDDKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEMEA 363 Query: 353 K-----DFNERTQFFMQAINVDEIIAH 374 + + E T A V E+ Sbjct: 364 EWAAQDETQEATYEEAPAEEVSELSQE 390 >gi|118470868|ref|YP_886962.1| transcription elongation factor NusA [Mycobacterium smegmatis str. MC2 155] gi|118172155|gb|ABK73051.1| transcription termination factor NusA [Mycobacterium smegmatis str. MC2 155] Length = 343 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 135/345 (39%), Positives = 195/345 (56%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G D R++I+ +TG + + Sbjct: 5 MAALHAIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR D ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 58 -------------IARQTDADGNVLAEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF G+I++G ++R N V+V +G S+GVI E + E GDR Sbjct: 103 VYGEFAAHEGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +DE VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 IDEAGRAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 327 >gi|160887870|ref|ZP_02068873.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492] gi|317477855|ref|ZP_07937041.1| transcription termination factor NusA [Bacteroides sp. 4_1_36] gi|156862556|gb|EDO55987.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492] gi|316905991|gb|EFV27759.1| transcription termination factor NusA [Bacteroides sp. 4_1_36] Length = 421 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 140/424 (33%), Positives = 245/424 (57%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++I +D + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAI---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ ++ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGID 421 E + Sbjct: 417 EEEE 420 >gi|50903880|gb|AAT87595.1| N utilization substance protein A [Streptococcus pyogenes MGAS10394] gi|71803212|gb|AAX72565.1| N utilization substance protein A [Streptococcus pyogenes MGAS6180] gi|94548429|gb|ABF38475.1| N utilization substance protein A [Streptococcus pyogenes MGAS10750] Length = 396 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 13 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 72 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 73 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 132 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 133 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 193 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 253 PNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 312 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 313 APAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRL 372 Query: 351 RQK 353 + Sbjct: 373 EAE 375 >gi|255010119|ref|ZP_05282245.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] gi|313147917|ref|ZP_07810110.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] gi|313136684|gb|EFR54044.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] Length = 420 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 139/424 (32%), Positives = 241/424 (56%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQQIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++ +D + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENA---QDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKSVLTAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EDNE 420 >gi|319900402|ref|YP_004160130.1| NusA antitermination factor [Bacteroides helcogenes P 36-108] gi|319415433|gb|ADV42544.1| NusA antitermination factor [Bacteroides helcogenes P 36-108] Length = 421 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 137/416 (32%), Positives = 235/416 (56%), Gaps = 8/416 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EV Sbjct: 10 LIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREV 69 Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + VEN QI L AR D S ++G V+D + +FGR A+ + +Q + K+ E E Sbjct: 70 VADADVENSNLQIPLSEARKIDASYEVGEEVTDEVIFANFGRRAILNLRQTLASKIMELE 129 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R G+ ++ Sbjct: 130 KDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYRKGETARAV 189 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 190 VARVDNKNNNPKIILSRTSPIFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAVESYD 249 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + L+E+ Sbjct: 250 DRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSIRLNEEE 309 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ +D + F Sbjct: 310 HKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAV---EDEDIYLDEFRD- 365 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +D + + A G + + + +EET E+ ++ E + Sbjct: 366 -EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEFEEEE 420 >gi|329964512|ref|ZP_08301566.1| transcription termination factor NusA [Bacteroides fluxus YIT 12057] gi|328524912|gb|EGF51964.1| transcription termination factor NusA [Bacteroides fluxus YIT 12057] Length = 423 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 140/423 (33%), Positives = 242/423 (57%), Gaps = 11/423 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVVE E+EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVEDAELENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ +D + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAV---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ ++ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGI 420 E Sbjct: 417 EEE 419 >gi|322376136|ref|ZP_08050645.1| transcription termination factor NusA [Streptococcus sp. C300] gi|321278904|gb|EFX55948.1| transcription termination factor NusA [Streptococcus sp. C300] Length = 378 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 132/389 (33%), Positives = 220/389 (56%), Gaps = 27/389 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLETFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAE 379 +A VD +A L+ E Sbjct: 362 E------------EAGQVDYAVADELIEE 378 >gi|260172453|ref|ZP_05758865.1| transcription elongation factor NusA [Bacteroides sp. D2] gi|315920747|ref|ZP_07916987.1| transcription elongation factor NusA [Bacteroides sp. D2] gi|313694622|gb|EFS31457.1| transcription elongation factor NusA [Bacteroides sp. D2] Length = 427 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 141/430 (32%), Positives = 244/430 (56%), Gaps = 11/430 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGIDITLQKK 427 E D +++ K Sbjct: 417 EEEDPSIENK 426 >gi|306830580|ref|ZP_07463747.1| transcription termination factor NusA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977559|ref|YP_004287275.1| transcription elongation protein nusA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304427298|gb|EFM30403.1| transcription termination factor NusA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177487|emb|CBZ47531.1| Transcription elongation protein nusA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 399 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 213/380 (56%), Gaps = 15/380 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + Sbjct: 5 SKEMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 65 REVVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 125 IREVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 185 VYKVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 245 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAI 304 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 305 APAEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEAL 364 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 365 EAEREANAAVAQEEVAPVEE 384 >gi|302522224|ref|ZP_07274566.1| transcription termination factor NusA [Streptomyces sp. SPB78] gi|302431119|gb|EFL02935.1| transcription termination factor NusA [Streptomyces sp. SPB78] Length = 371 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 194/339 (57%), Gaps = 18/339 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ V Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E E + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 KEEEADLADLG-EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V V+D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 327 >gi|302344943|ref|YP_003813296.1| transcription termination factor NusA [Prevotella melaninogenica ATCC 25845] gi|302149887|gb|ADK96149.1| transcription termination factor NusA [Prevotella melaninogenica ATCC 25845] Length = 409 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 140/414 (33%), Positives = 233/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R V Sbjct: 1 MIETFKEFKDTKSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVV 60 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 61 VADGEVEDENKEISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IISG V + V+ VD N++ ++ + E I R+ R G+ V++ Sbjct: 121 HDSLYNKYKDRVGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAV 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I+ V E P+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 181 IHRVDNENNNPKIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ Sbjct: 241 ERIDPVGACVGVRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEEN 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + F Sbjct: 301 KKAEVYLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDE---QNAEEDIYLDEFSD- 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + G ++ + + ET + R E Sbjct: 357 -EIDQWVIDAIKGIGLDTARQVLNAPREMLIEKADLEVETVDSVLNVLRSEFEQ 409 >gi|94544550|gb|ABF34598.1| N utilization substance protein A [Streptococcus pyogenes MGAS10270] Length = 396 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 13 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 72 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 73 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 132 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 133 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 193 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 253 PNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 312 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 313 APAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRL 372 Query: 351 RQK 353 + Sbjct: 373 EAE 375 >gi|281424957|ref|ZP_06255870.1| transcription termination factor NusA [Prevotella oris F0302] gi|281400801|gb|EFB31632.1| transcription termination factor NusA [Prevotella oris F0302] Length = 421 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 137/414 (33%), Positives = 229/414 (55%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKDTKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ QI+L A +P +IG VS+ + FGR A+ + +Q + K+ E E Sbjct: 73 VADGEVEDENKQIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+I+SG V ++ V +VD N++ ++ + E I + R G+ +++ Sbjct: 133 HDTLYNKYKDRVGQIVSGEVYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETIRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +DE+ Sbjct: 253 DRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E + D + F Sbjct: 313 HKAEVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVPEGE---ADEDIYLDEFSD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G + + + +EET + R E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKAVLNAPREMLIEKADLEEETVDHVINVLRAEFEQ 421 >gi|325686965|gb|EGD28989.1| N utilization substance protein A [Streptococcus sanguinis SK72] Length = 420 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 142/428 (33%), Positives = 231/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSGAEATDFDAVAEETVLETV 410 Query: 411 GRAREYLE 418 G RE E Sbjct: 411 GLEREAEE 418 >gi|322391412|ref|ZP_08064882.1| transcription elongation factor NusA [Streptococcus peroris ATCC 700780] gi|321145838|gb|EFX41229.1| transcription elongation factor NusA [Streptococcus peroris ATCC 700780] Length = 378 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 216/381 (56%), Gaps = 19/381 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDEI 371 + + F + E Sbjct: 362 EEAGQVD----FADTDELTEE 378 >gi|309811468|ref|ZP_07705250.1| transcription termination factor NusA [Dermacoccus sp. Ellin185] gi|308434519|gb|EFP58369.1| transcription termination factor NusA [Dermacoccus sp. Ellin185] Length = 339 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 200/351 (56%), Gaps = 18/351 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ E+ I DV++ + ++ A + G+ RVE++ TG + ++ Sbjct: 5 MAALRALEREREIPMDVIVPAIEQALLLAYQKEEGSYRRARVELDRRTGHVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ Q + +P + P +FGRVA +A+QVI+Q++R+ E + Sbjct: 61 ---EDGEKQ---EDGTWSEPGPEFDD------TPKNFGRVAAGTARQVIMQRMRDVEDEA 108 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +F K G+I+SGT+++ + V VD G +G++ E + E R G+R++ Y+ Sbjct: 109 ILGDFIGKEGDIVSGTIQQSLDSRFVKVDFGTVEGILPTAEQVPGETYRHGERLRCYVVS 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR +GPQ+ LSRTHP + KLF MEVPEI +G V++ A++R+ G R K+AV ++ I Sbjct: 169 VRRGPKGPQISLSRTHPNLVRKLFAMEVPEIADGSVEIAALAREAGHRTKIAVHATKPGI 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+AV++EL+ EKIDIV +S F+ AL P+ V V V+D Sbjct: 229 NAKGACIGPMGQRVRAVMSELQGEKIDIVDYSRQPDEFIAAALSPSRVESVEVVDPKARA 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + D + R Sbjct: 289 ARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRPDTALADGGRDDESAR 339 >gi|289167249|ref|YP_003445516.1| transcription termination-antitermination factor [Streptococcus mitis B6] gi|288906814|emb|CBJ21648.1| transcription termination-antitermination factor [Streptococcus mitis B6] Length = 378 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 212/362 (58%), Gaps = 15/362 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQ 352 + Sbjct: 362 EE 363 >gi|300871262|ref|YP_003786135.1| putative transcription elongation factor NusA [Brachyspira pilosicoli 95/1000] gi|300688963|gb|ADK31634.1| putative transcription elongation factor, NusA [Brachyspira pilosicoli 95/1000] Length = 495 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 143/446 (32%), Positives = 244/446 (54%), Gaps = 34/446 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 ++ EK I D++ V+ + A + YG + + + + +++R + VVEEV Sbjct: 9 LQMLSEEKDISIDLLKEVVESVMILALKKKYGDNVNFHINFD-NNNNPTVYRGVNVVEEV 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQY 131 ++ +ISL+ A+ D I++G V + + DFGR+ +AK QK+ E E++ Y Sbjct: 68 KDDRKEISLEEAKKLDSDINLGDEVLILVDHVGDFGRIESTAAKTTFFQKISELEKNIIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EFK + ++++G +R GN+ V+LG ++GV+ + + RE+ GDR+++YIY V Sbjct: 128 NEFKRRENQLVNGYFQRENRGNIYVNLGKTEGVLLKKDLSPREHYAAGDRIRAYIYKVEN 187 Query: 192 EQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 ++ G P + L+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+ +DP Sbjct: 188 DRSGHPTIYLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKIAVVSNKPEVDP 247 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309 +GAC+G +G R+QA++ E+ EKID+V WS D ++ A+ PA T++++ D + Sbjct: 248 IGACIGQKGIRIQAIIKEIEGEKIDVVKWSKDIREYIAEAIAPAKPTRIIITDPEKKEAM 307 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ--KDFNERTQFFMQAI- 366 +I+P +QLSLA+GR G NV+LASQLTG+T D+ TE + N + KD Q F + + Sbjct: 308 IIIPDDQLSLALGRSGYNVKLASQLTGYTFDLKTETDIKENPELLKDIVPLNQIFAENVE 367 Query: 367 ---------------------------NVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 ++D+ + L+ G +EEL + + I Sbjct: 368 ENVENEEAIADTEDTQEAAVSNLYSLTDIDKDVIKTLIDGGINSIEELYGMDANTIIEKT 427 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQ 425 DEET I +E + ++ T + Sbjct: 428 NLDEETVNNIINILKEVVSVVEETDE 453 >gi|150003921|ref|YP_001298665.1| transcription elongation factor NusA [Bacteroides vulgatus ATCC 8482] gi|212692747|ref|ZP_03300875.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855] gi|237709443|ref|ZP_04539924.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA] gi|237724957|ref|ZP_04555438.1| transcription elongation factor NusA [Bacteroides sp. D4] gi|254880838|ref|ZP_05253548.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA] gi|265754642|ref|ZP_06089694.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA] gi|294775077|ref|ZP_06740606.1| transcription termination factor NusA [Bacteroides vulgatus PC510] gi|319639848|ref|ZP_07994577.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A] gi|149932345|gb|ABR39043.1| putative nitrogen utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212664683|gb|EEB25255.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855] gi|229436695|gb|EEO46772.1| transcription elongation factor NusA [Bacteroides dorei 5_1_36/D4] gi|229456499|gb|EEO62220.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA] gi|254833631|gb|EET13940.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA] gi|263234756|gb|EEZ20324.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA] gi|294451121|gb|EFG19592.1| transcription termination factor NusA [Bacteroides vulgatus PC510] gi|317388512|gb|EFV69362.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A] Length = 418 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 139/422 (32%), Positives = 237/422 (56%), Gaps = 11/422 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ D+VG +IS V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSLYNKYIDRVGTVISAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VL E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S D + Sbjct: 302 SIVLHEEEKKAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYRELDESAM---DEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +DE + + G + + + +E T ++ R Sbjct: 359 YLDEFKD--EIDEWVITAIKNIGLDTAKAVLNAPREMLIEKADLEENTVDDVLRVLRAEF 416 Query: 418 EG 419 E Sbjct: 417 EE 418 >gi|332883100|gb|EGK03384.1| transcription termination factor NusA [Dysgonomonas mossii DSM 22836] Length = 418 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 137/424 (32%), Positives = 235/424 (55%), Gaps = 9/424 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + L+ KSIDR ++SV+ DS + L+G+ + V INP+ GD+ Sbjct: 1 MAKKETINLIDTFSEFKELKSIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDL 60 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R +VE+ +E+ +I+L A+ D ++G V+D + DFGR A+ + +Q + Sbjct: 61 EIWRNRVIVEDDQLEDDNTEIALSEAKKIDEDFEVGEEVTDEVFFEDFGRRAILNLRQTL 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLR 177 K+ E +++ Y +K+K+GEI+SG V ++ + ++D + ++ + E I + R Sbjct: 121 TSKILELQKESLYNRYKEKIGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V + P+++LSRT P F+ +L +EVPEI +G++ +K ++R PG RA Sbjct: 181 KGEHVRAVVERVDNKNNNPKIILSRTSPTFLERLLELEVPEINDGLITIKNIARIPGERA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++ + ++ AL PA +T Sbjct: 241 KVAVESYDERIDPVGACVGMKGSRIHGIVRELRNENIDIINYTSNMNLYIQRALSPAKIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V ++E+ R EV++ E++SLAIG+ G N++LAS LTG+TID+ + +D +E Sbjct: 301 SVKINEEEKRAEVLLRPEEVSLAIGKGGFNIKLASMLTGYTIDVYRDIDDFDEEDIYLDE 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 +D + L G + + ++ +E T EI R Sbjct: 361 FRD------EIDGWVIDQLKKIGCVTAKNVLATDRDKLIQEADLEENTVDEILNILRAEF 414 Query: 418 EGID 421 + Sbjct: 415 DDEA 418 >gi|260591778|ref|ZP_05857236.1| transcription termination factor NusA [Prevotella veroralis F0319] gi|260536062|gb|EEX18679.1| transcription termination factor NusA [Prevotella veroralis F0319] Length = 421 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 139/417 (33%), Positives = 233/417 (55%), Gaps = 8/417 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R Sbjct: 10 RPNMIETFKEFKDTKSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRN 69 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EV++ +ISL AR + ++G VS+ + FGR A+ + +Q + K+ Sbjct: 70 RVVVADGEVKDENKEISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKIL 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E E D Y ++KD+VG+IISG V + V+ VD N++ ++ + E I R+ R G+ + Sbjct: 130 ELEHDSLYNKYKDRVGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETI 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I V E P+++LSRT P+F+ +L EVPEI G++ ++ ++R PG RAK+AV Sbjct: 190 RAVILRVDNENNNPKIILSRTAPEFLERLLEAEVPEIAEGLIAIRKIARMPGERAKIAVE 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +D Sbjct: 250 SFDDRIDPVGACVGVRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTID 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + F Sbjct: 310 EENKKAEVYLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDE---QNAEEDIYLDEF 366 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + G ++ + +EET + + E Sbjct: 367 SD--EIDQWVIDAIKGIGLDTARQVLNAPREMLIEKADLEEETVDNVLNILKSEFEQ 421 >gi|226306117|ref|YP_002766077.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229491401|ref|ZP_04385225.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] gi|226185234|dbj|BAH33338.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229321686|gb|EEN87483.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] Length = 343 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 30/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ EK + + V++ + ++ A R G + R+++N +TG + + Sbjct: 5 IAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A D D ++ G D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 --------------AHDTDADGNMIGEEWDD-TPEGFGRIAATTARQVILQRLRDAEHER 103 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 + EF GEI+ G ++R N V+V +G ++G++ E + EN G+R Sbjct: 104 SFGEFSTHEGEIVGGVIQRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGER 163 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ V+R+ G R+K+AV Sbjct: 164 IKCYVVGVARGARGPQITLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAV 223 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D ATFV NAL P+ V V V Sbjct: 224 ASRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTV 283 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VDPEARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 328 >gi|270294867|ref|ZP_06201068.1| transcription termination factor NusA [Bacteroides sp. D20] gi|270274114|gb|EFA19975.1| transcription termination factor NusA [Bacteroides sp. D20] Length = 421 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 140/425 (32%), Positives = 245/425 (57%), Gaps = 11/425 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++I +D + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAI---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ ++ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGIDI 422 E + Sbjct: 417 EEENE 421 >gi|326382939|ref|ZP_08204629.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] gi|326198529|gb|EGD55713.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] Length = 347 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 202/354 (57%), Gaps = 31/354 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +K + + VLS + ++ A R G + R++I+ ++G + + Sbjct: 5 ISALRLIEADKGVPAETVLSAIETALLTAYRHTDGFAPNARIDIDRKSGQVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------AQELDEDRNVVHEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y E GE++ G V+ G VIV +G+ ++GVI E + E+ + GDR Sbjct: 103 NYGELVAHEGEVVGGIVQADAKANARGMVIVQIGSDSNATEGVIPPAEQVPGESYKHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 IKCYVVGVARGSRGPQITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 + + ++ GAC+G G RV+ V++EL EKIDI+ ++ D A FV +AL PA V V V Sbjct: 223 HTGVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYATDPAEFVGHALSPAKVVSVTV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +D++ VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ D R + Sbjct: 283 IDQETKAARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDAGDGGPRDTE 336 >gi|293364176|ref|ZP_06610903.1| transcription elongation factor NusA [Streptococcus oralis ATCC 35037] gi|315611732|ref|ZP_07886654.1| transcription termination factor NusA [Streptococcus sanguinis ATCC 49296] gi|291317354|gb|EFE57780.1| transcription elongation factor NusA [Streptococcus oralis ATCC 35037] gi|315316147|gb|EFU64177.1| transcription termination factor NusA [Streptococcus sanguinis ATCC 49296] Length = 378 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 132/389 (33%), Positives = 219/389 (56%), Gaps = 27/389 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAE 379 +A VD A L+ E Sbjct: 362 E------------EAGQVDYAAADELIEE 378 >gi|313205355|ref|YP_004044012.1| nusa antitermination factor [Paludibacter propionicigenes WB4] gi|312444671|gb|ADQ81027.1| NusA antitermination factor [Paludibacter propionicigenes WB4] Length = 421 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/414 (31%), Positives = 230/414 (55%), Gaps = 8/414 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + L+ KSIDR ++SVM +S + L+GT + V INP+ GD Sbjct: 1 MSKKETISLIDTFSEFKELKSIDRSTLISVMEESFRNVISKLFGTDENYDVIINPDKGDF 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV E++ + QISL A+ D +I V+D + + FGR A+ + +Q + Sbjct: 61 EIYRNRTVVADEDLTDPNLQISLTEAKKIDEDYEIDEDVTDTVDFLSFGRRAILTLRQTL 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E ++D + ++ +KVG+I+S + ++ +++D ++ + + E I + R Sbjct: 121 SSKILELQKDNVFSKYSEKVGQIVSAELYQIWKKEMLLIDDEGNELYLPKTEQIPTDFYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD V++ + V + P+++LSR P F+ +LF +EVPEI+ G++ +K ++R PG RA Sbjct: 181 KGDTVRAVVAMVENKNNNPKIILSRISPVFLERLFELEVPEIHEGLITIKKIARIPGERA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 241 KVAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTNNVNLFISRALSPAKIS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E + E+ + E++S AIG+ G N++LA L+G+T+D+ E ++ + + Sbjct: 301 SIRLNEAEKKAEIYLKPEEVSQAIGKGGLNIKLAGMLSGYTLDVFREMDED---TESEDI 357 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D+ + L A G + + + ++ +EET E+ Sbjct: 358 YLDEFSD--EIDQWVIDALKAIGCDTAKSVLAISRQDLVRRTDLEEETIDEVLA 409 >gi|320008230|gb|ADW03080.1| NusA antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 200/345 (57%), Gaps = 22/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A +K I DV++ + ++ A G+ RVE++ +G ++++ Sbjct: 5 VKLLKGLAQDKEIPFDVLVGAIESALLIAYHRTEGSHRRARVELD-ASGHVTVWAK---- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++ L+ ++ P FGR+A +AKQVI+Q++R+AE DR Sbjct: 60 ---DDPA---ELEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDR 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ Sbjct: 105 TFGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + + Sbjct: 165 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 225 NPKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGTRS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETEAERD 329 >gi|300812554|ref|ZP_07092971.1| transcription termination factor NusA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496427|gb|EFK31532.1| transcription termination factor NusA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 403 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 142/377 (37%), Positives = 223/377 (59%), Gaps = 8/377 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 2 SKEMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REA Sbjct: 62 KTVVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKS 184 E E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ Sbjct: 122 ENAHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVRV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+ Sbjct: 182 LVTKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V + Sbjct: 242 DPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDE 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +D + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 302 DDERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVA 361 Query: 363 MQAINVDEIIAHLLVAE 379 D+ + E Sbjct: 362 E-----DQDLQQTEAEE 373 >gi|262202085|ref|YP_003273293.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] gi|262085432|gb|ACY21400.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] Length = 340 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 126/348 (36%), Positives = 198/348 (56%), Gaps = 31/348 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +K I D V++ + ++ A R G R+++N +TG + + Sbjct: 5 INALRMIEADKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + D+ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------AQELDDNGDVVHEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 + + GEI+ G V++ N ++V +G+ ++G+I E + E+ GDR Sbjct: 103 NFGDLVTHEGEIVGGVVQQDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 IKCYVVGVSRGARGPQITLSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 + + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 HTGVAGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 283 VDPTAKAARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDADPA 330 >gi|251783184|ref|YP_002997489.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391816|dbj|BAH82275.1| N utilization substance protein A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 404 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 21 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTV 80 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 81 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 140 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 141 MREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 200 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 201 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 260 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 261 PNVDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 320 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 321 APAEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRL 380 Query: 351 RQK 353 + Sbjct: 381 EAE 383 >gi|29348812|ref|NP_812315.1| transcription elongation factor NusA [Bacteroides thetaiotaomicron VPI-5482] gi|253568843|ref|ZP_04846253.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6] gi|298387892|ref|ZP_06997441.1| transcription termination factor NusA [Bacteroides sp. 1_1_14] gi|29340718|gb|AAO78509.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840862|gb|EES68943.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6] gi|298259299|gb|EFI02174.1| transcription termination factor NusA [Bacteroides sp. 1_1_14] Length = 439 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 138/413 (33%), Positives = 237/413 (57%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +D + + A G + + + +EET E+ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409 >gi|270292191|ref|ZP_06198406.1| N utilization substance protein A [Streptococcus sp. M143] gi|270279719|gb|EFA25561.1| N utilization substance protein A [Streptococcus sp. M143] Length = 378 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 212/362 (58%), Gaps = 15/362 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQ 352 + Sbjct: 362 EE 363 >gi|309799813|ref|ZP_07694020.1| transcription termination factor NusA [Streptococcus infantis SK1302] gi|308116529|gb|EFO53998.1| transcription termination factor NusA [Streptococcus infantis SK1302] Length = 378 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 215/370 (58%), Gaps = 15/370 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQ 360 + ++ + Sbjct: 362 EAAEQADQVE 371 >gi|288904585|ref|YP_003429806.1| transcription termination factor NusA [Streptococcus gallolyticus UCN34] gi|288731310|emb|CBI12861.1| Transcription termination factor NusA [Streptococcus gallolyticus UCN34] Length = 396 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 213/380 (56%), Gaps = 15/380 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + Sbjct: 2 SKEMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 IREVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEAL 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 362 EAEREANAAVAQEEVAPVEE 381 >gi|239944687|ref|ZP_04696624.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] gi|239991150|ref|ZP_04711814.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 11379] gi|291448148|ref|ZP_06587538.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] gi|291351095|gb|EFE77999.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] Length = 346 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/346 (37%), Positives = 201/346 (58%), Gaps = 22/346 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A +K I DV++ + ++ A G+ RV+++ E G ++++ Sbjct: 5 VKLLKGLAQDKEIPFDVLVGAIESALLIAYHRTDGSYRRARVKLD-ENGHVTVWAK---- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D+ Sbjct: 60 ---EDPA---DLEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDK 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ Sbjct: 105 TFGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + + Sbjct: 165 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 225 NPKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGARS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+ Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEEREN 330 >gi|322387178|ref|ZP_08060788.1| transcription elongation factor NusA [Streptococcus infantis ATCC 700779] gi|321141707|gb|EFX37202.1| transcription elongation factor NusA [Streptococcus infantis ATCC 700779] Length = 378 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 212/362 (58%), Gaps = 15/362 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQ 352 + Sbjct: 362 EE 363 >gi|282889767|ref|ZP_06298306.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500341|gb|EFB42621.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 424 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 152/420 (36%), Positives = 245/420 (58%), Gaps = 10/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I + + EK I R++V++ + +S++ AA+ S++ V INP++G+I ++ Sbjct: 2 NKDLIAIFEYLEREKGIKRNIVVAAIEESLRAAAKKSISGASNVTVTINPKSGNIDVYCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEVE +ISL+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R A Sbjct: 62 KEIVEEVEVEAQEISLQDAREIDPDCEIGQFIDVVATPKDFGRIAAQKARQIITQKLRNA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + E+ISGT+KR G NV++DLG + ++ E G++V + Sbjct: 122 ERDVIYEEYRHRTNELISGTIKRFVRGSNVVIDLGKVEAIMPTKHYPKTEKYHVGEKVLA 181 Query: 185 YIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +L EVPE+ +GIV + + R+ G R K+ V S Sbjct: 182 LLYEVNETENGGAEVVLSRSHPEFVKQLMMQEVPELNDGIVVIDRIVREAGYRTKMTVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +DS IDPVG+CVGMRG RV+ VV EL +EKIDI+ +S D + NAL P + KV ++E Sbjct: 242 TDSKIDPVGSCVGMRGIRVKNVVRELNNEKIDIIPYSQDPVELLQNALDPIEIRKVSVNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT---- 359 D I ++V + IG++G N RL SQL G+ +++ E + + +E Sbjct: 302 DDKTISIVVDDADFAAVIGKKGMNARLNSQLIGYELEVQRMAEYNHAMAVERSELATSQE 361 Query: 360 ----QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + V+ +I L+AEG++ + ++A++ G E A +I + R+ Sbjct: 362 PWLDKPLKNIEGVNTLIFEHLIAEGYSTPRAILTAAPEKLATVPGISIELADKILEQIRK 421 >gi|116511573|ref|YP_808789.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris SK11] gi|116107227|gb|ABJ72367.1| Transcription elongation factor [Lactococcus lactis subsp. cremoris SK11] Length = 382 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 136/367 (37%), Positives = 217/367 (59%), Gaps = 2/367 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++ + + +I A + YG +++V + + G+ +++ Sbjct: 2 SKEMLNAFAMLEEQKGIKSEIAIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYST 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE Sbjct: 62 REVVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ EII GTV++V+ V V+LG D ++ + + I +EN DRVK Y Sbjct: 122 ERTIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVDDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D Sbjct: 182 VTDVVLTPKGTRVFISRTVPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ Sbjct: 242 ENVDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLIT-AD 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G +V ++QLSLAIG+RGQNVRLA+ +T IDI +E + +F Sbjct: 301 GSSLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFN-MDDYEFVGEADEETPT 359 Query: 366 INVDEII 372 + V+E I Sbjct: 360 LEVEETI 366 >gi|149178853|ref|ZP_01857433.1| transcription elongation factor NusA [Planctomyces maris DSM 8797] gi|148842328|gb|EDL56711.1| transcription elongation factor NusA [Planctomyces maris DSM 8797] Length = 494 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 154/409 (37%), Positives = 243/409 (59%), Gaps = 32/409 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + E+L+I DA+ +KSID+++V + +I AAR +G ++ V+I+ +TG+ ++ Sbjct: 2 DGKEVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTGEPTVLC 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 G + + GRVA Q+AKQV+IQK+RE Sbjct: 62 ----------------------------DGDKLGKDILGEILGRVAAQTAKQVMIQKIRE 93 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD + E+ + + +SGTV RVE G V+V+LG +G++ R E I E+ R DRV++ Sbjct: 94 AERDTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGKIEGILPRGEQIPGESFRVNDRVRA 153 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + DVR+ +V+LSRTHP + +LF +E+PE+ + I+ V++++R+ G R+K+AV Sbjct: 154 VVLDVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSCI 213 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DSSID VGACVGMRG+R++ +V EL E+IDIV W+ V N+L+PA V V+L Sbjct: 214 DSSIDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCPM 273 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +GR+ V+V +QL LAIGR+GQNVRLAS+L GW I+++T+ E + ++ + F Sbjct: 274 LGRVIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMTQTE----LDEQLDKTVEAFSS 329 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 V E +A LV++GF +L+ ++ ++A + G E +I A Sbjct: 330 IPGVSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQIVEVA 378 >gi|146319503|ref|YP_001199215.1| transcription elongation factor NusA [Streptococcus suis 05ZYH33] gi|146321698|ref|YP_001201409.1| transcription elongation factor NusA [Streptococcus suis 98HAH33] gi|223934079|ref|ZP_03626028.1| NusA antitermination factor [Streptococcus suis 89/1591] gi|253752514|ref|YP_003025655.1| N utilization substance protein A [Streptococcus suis SC84] gi|253754340|ref|YP_003027481.1| N utilization substance protein A [Streptococcus suis P1/7] gi|253756274|ref|YP_003029414.1| N utilization substance protein A [Streptococcus suis BM407] gi|302024448|ref|ZP_07249659.1| transcription elongation factor NusA [Streptococcus suis 05HAS68] gi|145690309|gb|ABP90815.1| Transcription elongation factor [Streptococcus suis 05ZYH33] gi|145692504|gb|ABP93009.1| Transcription elongation factor [Streptococcus suis 98HAH33] gi|223897249|gb|EEF63661.1| NusA antitermination factor [Streptococcus suis 89/1591] gi|251816803|emb|CAZ52446.1| putative N utilization substance protein A [Streptococcus suis SC84] gi|251818738|emb|CAZ56574.1| putative N utilization substance protein A [Streptococcus suis BM407] gi|251820586|emb|CAR47342.1| putative N utilization substance protein A [Streptococcus suis P1/7] gi|292559121|gb|ADE32122.1| transcription termination factor NusA [Streptococcus suis GZ1] gi|319758923|gb|ADV70865.1| transcription elongation factor NusA [Streptococcus suis JS14] Length = 380 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 207/367 (56%), Gaps = 15/367 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + + I++ ++ + +S++ A + YG +E + + GD +F + Sbjct: 2 SKEMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSESAVIEFDEKKGDFHVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +R + +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y Sbjct: 122 KRAITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ + ++ +E ID++ W D A F+ NAL Sbjct: 242 PNVDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNAL 301 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEYEAF 361 Query: 351 RQKDFNE 357 + Sbjct: 362 EATQYAT 368 >gi|284044673|ref|YP_003395013.1| NusA antitermination factor [Conexibacter woesei DSM 14684] gi|283948894|gb|ADB51638.1| NusA antitermination factor [Conexibacter woesei DSM 14684] Length = 503 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 140/366 (38%), Positives = 218/366 (59%), Gaps = 24/366 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A EK+I + ++ + D++ A + G +VE++ E GD +++ L Sbjct: 2 SKEILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVWEL 61 Query: 66 LEVVEEVEN----YTCQISLKVARDRDPS-----------------IDIGGVVS-DPLPP 103 + E++E+ +I DP + + + P Sbjct: 62 K-IPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEYEDQIERVDVTP 120 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSD 162 DFGR+A Q+AKQVI+Q++REAERD + E++D+VGE+I+G V++ + +V L + Sbjct: 121 EDFGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERVE 180 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 ++ + E + E R+K+ I DV +GP +++SR P+ + LF +EVPEI +G Sbjct: 181 ALLPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIADG 240 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +V++ V+R+PG R+K+AV S +DPVGACVG RGSRV+ VV+ELR EKIDI+ ++ + Sbjct: 241 LVEITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYNDE 300 Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A FV AL PA V +V++D+D + VIVP +QLSLAIGR GQN RLA++LTGW IDI Sbjct: 301 PARFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDIR 360 Query: 343 TEEEDS 348 +E E + Sbjct: 361 SETEFA 366 >gi|153809150|ref|ZP_01961818.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185] gi|149128126|gb|EDM19346.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185] Length = 430 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 137/413 (33%), Positives = 237/413 (57%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QI+L A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQIALSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +D + + A G + + + +EET E+ Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409 >gi|299142250|ref|ZP_07035383.1| transcription termination factor NusA [Prevotella oris C735] gi|298576339|gb|EFI48212.1| transcription termination factor NusA [Prevotella oris C735] Length = 421 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 229/414 (55%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKDTKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE+ QI+L A +P +IG VS+ + FGR A+ + +Q + K+ E E Sbjct: 73 VADGEVEDENKQIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+I+SG + ++ V +VD N++ ++ + E I + R G+ +++ Sbjct: 133 HDTLYNKYKDRVGQIVSGEIYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETIRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +DE+ Sbjct: 253 DRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E + D + F Sbjct: 313 HKAEVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVPEGE---ADEDIYLDEFSD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G + + + +EET + R E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKAVLNAPREMLIEKADLEEETVDHVINVLRAEFEQ 421 >gi|296171600|ref|ZP_06852840.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894055|gb|EFG73817.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 351 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 198/354 (55%), Gaps = 31/354 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 VAR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------VARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D + FV NAL PA V V + Sbjct: 223 KSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPSRFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 283 IDPNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDTPGGSEGHSE 336 >gi|306824618|ref|ZP_07457963.1| transcription termination factor NusA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433186|gb|EFM36157.1| transcription termination factor NusA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 378 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 131/389 (33%), Positives = 218/389 (56%), Gaps = 27/389 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAE 379 + VD A L+ E Sbjct: 362 E------------EVGQVDYAAADELIEE 378 >gi|331265777|ref|YP_004325407.1| transcription termination-antitermination factor [Streptococcus oralis Uo5] gi|326682449|emb|CBZ00066.1| transcription termination-antitermination factor [Streptococcus oralis Uo5] Length = 374 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 27/386 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAME-- 358 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAE 379 +A VD +A L+ E Sbjct: 359 ----------EAGQVDYAVADELIEE 374 >gi|119962022|ref|YP_947326.1| transcription termination factor NusA [Arthrobacter aurescens TC1] gi|119948881|gb|ABM07792.1| transcription termination factor NusA [Arthrobacter aurescens TC1] Length = 326 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 120/338 (35%), Positives = 196/338 (57%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKTPGAFEKARAELDRKSGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + G D P FGR+A +A+Q+I+Q++R+ E D Sbjct: 59 --------------ATEIDDDGEPIGEFED--TPAGFGRIAASTARQIILQRLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFK + GE+++G +++ ++I V+LG + ++ E + E G R+++++ D Sbjct: 103 VLGEFKGREGELVAGMIQQGNNPHMIQVNLGAVEALLPPPEQVPGEKYLHGSRLRAFVVD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP + LSR+HP + KLF MEVPEI + V++ A++R+ G R K+AV ++ + Sbjct: 163 VHRGAKGPSITLSRSHPGLVRKLFEMEVPEIADHSVEIVALAREAGHRTKIAVKANTPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ N+L P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSDDPATFIANSLSPSRVNSVTITDESTRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDA 320 >gi|288801646|ref|ZP_06407088.1| transcription termination factor NusA [Prevotella melaninogenica D18] gi|288335688|gb|EFC74121.1| transcription termination factor NusA [Prevotella melaninogenica D18] Length = 421 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 141/417 (33%), Positives = 234/417 (56%), Gaps = 8/417 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R Sbjct: 10 RPNMIETFKEFKDTKSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRN 69 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISL AR + ++G VS+ + FGR A+ + +Q + K+ Sbjct: 70 RVVVADGEVEDENKEISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKIL 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E E D Y ++KD+VG+IISG V + V+ VD N++ ++ + E I R+ R G+ V Sbjct: 130 ELEHDSLYNKYKDRVGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETV 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I+ V E P+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV Sbjct: 190 RAVIHRVDNENNNPKIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVE 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +D Sbjct: 250 SFDERIDPVGACVGVRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTVD 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + F Sbjct: 310 EENKKAEVYLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDE---QNAEEDIYLDEF 366 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + G ++ + + ET + R E Sbjct: 367 SD--EIDQWVIDAIKGIGLDTARQVLNAPREMLIEKADLEVETVDSVLNVLRSEFEQ 421 >gi|160883929|ref|ZP_02064932.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483] gi|237720417|ref|ZP_04550898.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4] gi|299147096|ref|ZP_07040163.1| transcription termination factor NusA [Bacteroides sp. 3_1_23] gi|156110659|gb|EDO12404.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483] gi|229450168|gb|EEO55959.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4] gi|298514981|gb|EFI38863.1| transcription termination factor NusA [Bacteroides sp. 3_1_23] Length = 431 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 141/430 (32%), Positives = 244/430 (56%), Gaps = 11/430 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGIDITLQKK 427 E D +++ K Sbjct: 417 EEEDPSIENK 426 >gi|229820977|ref|YP_002882503.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333] gi|229566890|gb|ACQ80741.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333] Length = 346 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 126/347 (36%), Positives = 198/347 (57%), Gaps = 22/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ E+ I DV++ + ++ A G + RV ++ ++G +++ V Sbjct: 5 MSALRALEREREISLDVLVGAIEQALLSAYERTPGAYPEARVHLDRQSGHVTVLATEVVG 64 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E E + P FGR+A +A+QVIIQ++R+AE D+ Sbjct: 65 EGDEEVRRE--------------------FDHTPEGFGRIATSTARQVIIQRLRDAEDDQ 104 Query: 130 QYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 F+ + GE+I+G V++ G V+VD+G + V+ E + E+ G+R+++Y+ D Sbjct: 105 VLGTFRGREGELIAGVVQQGGRVGAVLVDVGGVEAVLPPHEQVPGESYPHGERIRAYVLD 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP + LSRTHP F+ ++F +EVPE+ +G V++ A++R+ G R K+AV S + Sbjct: 165 VSRGLKGPSITLSRTHPNFVRRMFALEVPEVADGSVEIAALAREAGHRTKMAVRSLVPGV 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 GAC+G G RV+AV+ ELR EKIDIV +S D A FV AL PA V+ V ++D + Sbjct: 225 GAKGACIGPMGQRVRAVMAELRGEKIDIVDFSEDPARFVAAALSPARVSSVQIVDAEARS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VIVP QLSLAIG+ GQN RLA++LTGW IDI + + + + + Sbjct: 285 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTQPADDAASE 331 >gi|150010113|ref|YP_001304856.1| transcription elongation factor NusA [Parabacteroides distasonis ATCC 8503] gi|255012627|ref|ZP_05284753.1| transcription elongation factor NusA [Bacteroides sp. 2_1_7] gi|298374483|ref|ZP_06984441.1| transcription termination factor NusA [Bacteroides sp. 3_1_19] gi|149938537|gb|ABR45234.1| putative nitrogen utilization substance protein [Parabacteroides distasonis ATCC 8503] gi|298268851|gb|EFI10506.1| transcription termination factor NusA [Bacteroides sp. 3_1_19] Length = 421 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 139/414 (33%), Positives = 240/414 (57%), Gaps = 12/414 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D Y ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLYAKYKDKIGHIIAAEVYQVWKKEILLLDDDGNELLLPKSEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + E++SLAIG+ G N++LA LT +TID+ + E + + + Sbjct: 302 SIRVNEEEKKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYTIDVFRDIEGA----DEEDI 357 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D + L G + + + +EI +E+T ++ Sbjct: 358 YLDEFSD--EIDSWVIDALKNIGCYTAKSVLAMDRNEIIERADLEEQTVDDLLA 409 >gi|311744143|ref|ZP_07717949.1| transcription termination factor NusA [Aeromicrobium marinum DSM 15272] gi|311313273|gb|EFQ83184.1| transcription termination factor NusA [Aeromicrobium marinum DSM 15272] Length = 332 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 129/339 (38%), Positives = 195/339 (57%), Gaps = 16/339 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR-LLEV 68 + A+ EK + DVV+ + ++ A RVE++ + G + ++ Sbjct: 5 MNALRALEREKDLSFDVVVEAIEQALLSAYHKTPDAHGHARVELDRKNGHVVVWAAERLP 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE E P D P DFGR A A+QVI+Q++REAE + Sbjct: 65 VEPTEE-----------QPHPPAAWSEEFDD--TPEDFGRFAAAIARQVIMQRLREAEDE 111 Query: 129 RQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++Y EF +VG+I+SG +++ G+V++DLG + ++ E ++ E G+R+K+Y+Y Sbjct: 112 QKYGEFSGRVGDIVSGVIQQGRSPGDVMIDLGRVEAILPSAERVAEEKYAHGERIKAYVY 171 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V + RGP+V +SRTHP + LF +EVPEI + V++ AV+R+ G R K+AV + Sbjct: 172 EVEKGLRGPRVKVSRTHPNLVRLLFALEVPEIADHSVEIVAVAREAGHRTKIAVRARVPG 231 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++ GAC+G G+RV+ V+ EL EKIDIV S D A F+ AL P+ VT V V+DE Sbjct: 232 VNAKGACIGPLGARVRNVMHELHGEKIDIVDHSDDPAEFIGYALSPSRVTSVTVVDEATR 291 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 292 SARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDT 330 >gi|282859024|ref|ZP_06268160.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010] gi|282588192|gb|EFB93361.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010] Length = 421 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 237/413 (57%), Gaps = 8/413 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + +R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD Sbjct: 6 IEEDRPNMIETFKEFKDTKSIDRTTLMSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65 Query: 62 LFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++R VV + + +ISL AR +P ++G VS+ + FGR A+ + +Q + Sbjct: 66 IYRNRVVVADDDVEDENKEISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLA 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRP 178 KV E E D Y ++KD+VG+II+G V + V+ VD N++ ++ + E I R+N R Sbjct: 126 SKVLELEHDSLYNKYKDRVGQIITGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRK 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G+ +++ I+ V E P+++LSRT P+F+ +L EVPEI +G++ +K ++R PG RAK Sbjct: 186 GETIRAVIHRVDNENNNPKIILSRTAPEFLERLLEAEVPEINDGLIAIKKIARMPGERAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ Sbjct: 246 IAVESFDERIDPVGACVGVRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSS 305 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + +DE+ + EV + E++SLAIGR G N++LAS LTG+TID+ E +++ + + Sbjct: 306 LTIDEENKKAEVYLQPEEVSLAIGRGGLNIKLASMLTGYTIDVFRELDEN---DAEDDIY 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D+ + + + G ++ + +EET + Sbjct: 363 LDEFSD--EIDQWVIDAIKSIGMETARQVLNAPREMLIEKADLEEETVDNVLN 413 >gi|224536664|ref|ZP_03677203.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus DSM 14838] gi|224521755|gb|EEF90860.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus DSM 14838] Length = 446 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 137/413 (33%), Positives = 240/413 (58%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGNIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ +D + Sbjct: 302 SIRLNEEERKAEVFLRPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAV---EDEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +D + + + G + + + +EET E+ Sbjct: 359 YLDEFRD--EIDGWVIDAIKSIGIDTAKAVLNAPRELLIEKTDLEEETVDEVL 409 >gi|330833473|ref|YP_004402298.1| transcription elongation factor NusA [Streptococcus suis ST3] gi|329307696|gb|AEB82112.1| transcription elongation factor NusA [Streptococcus suis ST3] Length = 380 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 206/367 (56%), Gaps = 15/367 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + + I++ ++ + +S+ A + YG +E + + GD +F + Sbjct: 2 SKEMLEAFRILEEDMGINKADIIDAVTESLCSAYKRRYGQSESAVIEFDEKKGDFHVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +R + +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y Sbjct: 122 KRAITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ + ++ +E ID++ W D A F+ NAL Sbjct: 242 PNVDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNAL 301 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEYEAF 361 Query: 351 RQKDFNE 357 + Sbjct: 362 EATQYAT 368 >gi|295102730|emb|CBL00275.1| transcription termination factor NusA [Faecalibacterium prausnitzii L2-6] Length = 373 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 145/352 (41%), Positives = 211/352 (59%), Gaps = 8/352 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59 M +AN E + + +E+ I + ++ + +I A + Y + VEI+P TG Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDHVMVEIDPNTGK 59 Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 ++ + +VV E+ + +I + A+ S +G V PL DFGR+A Q+AK V Sbjct: 60 FNVALIQDVVADEDWYDEHSEIGITEAQHIRKSYQVGDRVVTPLKTKDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRE 174 I Q +REAER +Q E + + +I+ TV RV E G V +DLG + ++ R+E + E Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPRNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G ++ YI DV +RGP+V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G Sbjct: 180 VYTEGQMLQVYIVDVVASERGPRVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D++++PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDANVNPVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V KV L V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPES 351 >gi|87309244|ref|ZP_01091380.1| transcription elongation factor NusA [Blastopirellula marina DSM 3645] gi|87287883|gb|EAQ79781.1| transcription elongation factor NusA [Blastopirellula marina DSM 3645] Length = 425 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 247/426 (57%), Gaps = 37/426 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L+I DA+ +K+ID++VV + ++ A R + S++ + I+ E G IS Sbjct: 2 NPTEVLRIVDAIHRDKNIDKEVVFQAIESALVSATRKYHSEESEVVIHIDREDGSIS--- 58 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVR 123 G + +P+ P + GR+ Q+AKQVIIQK+R Sbjct: 59 -----------------------------GHIDGEPVDPEEAVGRIGAQTAKQVIIQKIR 89 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD + E+ + VG++++GTV R E G IV LGN + ++ R E I E+ DRV+ Sbjct: 90 EAERDSLHDEYDEMVGQMVNGTVHRAEGGAAIVALGNVEAILPRSEQIPGESFHANDRVR 149 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + +VR++ +V+LSR + +F+ +LF E+PEI + ++++K +SR+PG R+K+AV S Sbjct: 150 AIVLEVRKQGSRVKVVLSRANKRFVQRLFEQEIPEITDEVIEIKNISREPGYRSKVAVDS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD +D VGACVG+RG+R++ +V EL E+IDIV W+ D T + NAL+PA V +V+L + Sbjct: 210 SDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWTDDPETLIPNALQPAEVEEVILCK 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+ EE F Sbjct: 270 MMGRAIVLVREDQLSLAIGRRGQNVRLASKLCGWDIEIMLREELEE----QIERAVTAFT 325 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 V + +A LV EGF ++L+ ++ + ++ F EE I+ A + Sbjct: 326 GIDGVTDSVAEQLVGEGFLSYDDLSVIESDALMAMGEFTEEEIERIRDEAENRGMEAERA 385 Query: 424 LQKKIR 429 L+ + R Sbjct: 386 LETERR 391 >gi|332358012|gb|EGJ35845.1| N utilization substance protein A [Streptococcus sanguinis SK1056] Length = 420 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 135/416 (32%), Positives = 228/416 (54%), Gaps = 16/416 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 R-QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + Q + + ++ + A D + +A + EIA +E EE Sbjct: 364 EAANELGGFAQEAEEILGDAAVLETEVSAAEATDFDAVAEETVLEIAGLESEAEEL 419 >gi|256838936|ref|ZP_05544446.1| transcription termination factor NusA [Parabacteroides sp. D13] gi|262382600|ref|ZP_06075737.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B] gi|301308163|ref|ZP_07214117.1| transcription termination factor NusA [Bacteroides sp. 20_3] gi|256739855|gb|EEU53179.1| transcription termination factor NusA [Parabacteroides sp. D13] gi|262295478|gb|EEY83409.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B] gi|300833633|gb|EFK64249.1| transcription termination factor NusA [Bacteroides sp. 20_3] Length = 421 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 139/414 (33%), Positives = 240/414 (57%), Gaps = 12/414 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D Y ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLYAKYKDKIGHIIAAEVYQVWKKEILLLDDDGNELLLPKSEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + E++SLAIG+ G N++LA LT +TID+ + E + + + Sbjct: 302 SIRVNEEEKKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYTIDVFRDIEGA----DEEDI 357 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D + L G + + + +EI +E+T ++ Sbjct: 358 YLDEFSD--EIDSWVIDALKNIGCYTAKSVLAMNRNEIIERADLEEQTVDDLLA 409 >gi|312892421|ref|ZP_07751916.1| transcription termination factor NusA [Mucilaginibacter paludis DSM 18603] gi|311295205|gb|EFQ72379.1| transcription termination factor NusA [Mucilaginibacter paludis DSM 18603] Length = 411 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 135/421 (32%), Positives = 238/421 (56%), Gaps = 13/421 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + N ++ Q K+IDR ++SV+ D + R YGT + V +N + GD+ Sbjct: 1 MSNINLIDSFQEFKDF---KNIDRPTMMSVLEDVFRSMIRKKYGTDENCDVIVNTDNGDL 57 Query: 61 SLFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R V+E+ E+ +I L A+ DP +++G + + FGR A+ +A+Q + Sbjct: 58 EIWRTRVVMEDGFSEDDDLEIELAEAKLLDPDLEVGDEHIELITLESFGRRAILAARQTL 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 + K+ E E+D Y ++KD+VGEII+G V +V +V D ++ ++ + E I + + Sbjct: 118 VSKILELEKDEIYKKYKDRVGEIITGEVYQVWKKETLVLDDEGNELLLPKSEQIPADYFK 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD V++ ++ V P++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RA Sbjct: 178 KGDSVRAVVHKVDMMNTNPKIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V EL++E ID++ ++ + ++ AL PA +T Sbjct: 238 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELKNENIDVINFTNNVQLYIQRALSPAKIT 297 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + LD+D V + +Q+SLAIGR G N++LA +LTG+ ID+ E ++ + + Sbjct: 298 SIKLDDDKKTAAVYLKPDQVSLAIGRGGHNIKLAGKLTGYEIDVYREADE-----HEEDV 352 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F ++ I G + + + + E+ +EET ++ + Sbjct: 353 DIEEFSD--EIEGWILDEFKRIGLDTAKSVLALSVGELVKRTDLEEETVKDVLSILQAEF 410 Query: 418 E 418 E Sbjct: 411 E 411 >gi|311898673|dbj|BAJ31081.1| putative transcription elongation protein NusA [Kitasatospora setae KM-6054] Length = 333 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 130/344 (37%), Positives = 197/344 (57%), Gaps = 21/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK + D+++ + ++ A G+ RVE+N +TG ++++ Sbjct: 5 MSALRGLVTEKGVPFDLLVESIESALLIAYHRTEGSRRRARVELNRKTGHVTVWA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 L+ A + D ++ P FGR+A +AKQVI+Q++R+A D+ Sbjct: 60 -----------LEDASELDEGVEPK---EFDDTPSGFGRIAASTAKQVILQRLRDAADDQ 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ K G+I++G V++ + +V+VD+G + ++ E + E+ R G R+K Y+ Sbjct: 106 TFGEYAGKEGDIVTGVVQQGNDPKSVLVDIGKLEAILPPQEQVPGEDYRHGTRLKCYVVG 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR RGP V LSRTHP + +LF +EVPEI +G V++ A++R+ G R K+AV+S + Sbjct: 166 VRRGVRGPSVTLSRTHPSLVKRLFALEVPEIADGSVEIAAIAREAGHRTKIAVWSRRQGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V AL PA VTKV ++D Sbjct: 226 NAKGACIGPNGMRVRGVMAELHGEKIDIVDWSEDPAEMVAAALSPARVTKVEIVDLAQRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEAPAEE 329 >gi|94542552|gb|ABF32601.1| N utilization substance protein A [Streptococcus pyogenes MGAS9429] gi|94546443|gb|ABF36490.1| N utilization substance protein A [Streptococcus pyogenes MGAS2096] Length = 396 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 132/382 (34%), Positives = 218/382 (57%), Gaps = 18/382 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 13 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 72 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 73 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 132 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 133 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 193 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 253 PNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 312 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 313 APAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRL 372 Query: 351 RQKDFNERTQFFMQAINVDEII 372 + + ++ VD+++ Sbjct: 373 ---EAEKEAATAVEEPVVDDVM 391 >gi|118617680|ref|YP_906012.1| transcription elongation factor NusA [Mycobacterium ulcerans Agy99] gi|118569790|gb|ABL04541.1| N utilization substance protein a NusA [Mycobacterium ulcerans Agy99] Length = 347 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 129/361 (35%), Positives = 198/361 (54%), Gaps = 31/361 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D FV NAL PA V V V Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWWIDIRGDSPEQSAEHPERGASRG 342 Query: 361 F 361 Sbjct: 343 L 343 >gi|19746626|ref|NP_607762.1| transcription elongation factor NusA [Streptococcus pyogenes MGAS8232] gi|139473254|ref|YP_001127969.1| transcription elongation factor NusA [Streptococcus pyogenes str. Manfredo] gi|161761305|ref|YP_060778.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10394] gi|162139101|ref|YP_599142.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10270] gi|162139179|ref|YP_603019.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10750] gi|162139397|ref|YP_280920.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS6180] gi|306826865|ref|ZP_07460165.1| transcription termination factor NusA [Streptococcus pyogenes ATCC 10782] gi|19748845|gb|AAL98261.1| transcription termination-antitermination factor [Streptococcus pyogenes MGAS8232] gi|134271500|emb|CAM29721.1| putative N utilization substance protein A [Streptococcus pyogenes str. Manfredo] gi|304430883|gb|EFM33892.1| transcription termination factor NusA [Streptococcus pyogenes ATCC 10782] Length = 385 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 122 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRL 361 Query: 351 RQK 353 + Sbjct: 362 EAE 364 >gi|317504200|ref|ZP_07962194.1| transcription elongation factor NusA [Prevotella salivae DSM 15606] gi|315664689|gb|EFV04362.1| transcription elongation factor NusA [Prevotella salivae DSM 15606] Length = 421 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 138/421 (32%), Positives = 233/421 (55%), Gaps = 8/421 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + + + L+ K+IDR ++SV+ +S + ++G+ + V +NP+ GD Sbjct: 6 IEEDSISLIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65 Query: 62 LFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++R VV EVE+ Q++L AR +P ++G VS+ + FGR A+ + +Q + Sbjct: 66 IYRNRIVVADGEVEDENKQVALTEARKIEPDYEVGEEVSEQVNFAKFGRRAILNLRQTLA 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRP 178 K+ E E D Y ++KD+VG+IISG V ++ V +VD N++ ++ + E I + R Sbjct: 126 SKILELEHDTLYNKYKDRVGQIISGEVYQIWKREVLVVDDENNELILPKSEQIPADVYRK 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G+ V++ I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK Sbjct: 186 GETVRAVILRVDNENNNPKIILSRTSPLFLERLLEAEVPEINDGLIAIRKIARMPGERAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V+ Sbjct: 246 IAVESFDDRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTSNINLFIQRALSPARVSS 305 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + +D++ + EV + E++SLAIGR G N++LAS LT +TID+ E + D + Sbjct: 306 INIDQENHKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVFREVPEGE---ADEDIY 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +D+ + + + G + + + +EET + R E Sbjct: 363 LDEFSD--EIDQWVIEAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDHVINVLRAEFE 420 Query: 419 G 419 Sbjct: 421 Q 421 >gi|307707652|ref|ZP_07644133.1| transcription termination factor NusA [Streptococcus mitis NCTC 12261] gi|307616365|gb|EFN95557.1| transcription termination factor NusA [Streptococcus mitis NCTC 12261] Length = 378 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 216/380 (56%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 362 ---EEAGSVDLEAENDTVEE 378 >gi|298480547|ref|ZP_06998744.1| transcription termination factor NusA [Bacteroides sp. D22] gi|295086245|emb|CBK67768.1| transcription termination factor NusA [Bacteroides xylanisolvens XB1A] gi|298273368|gb|EFI14932.1| transcription termination factor NusA [Bacteroides sp. D22] Length = 426 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 139/430 (32%), Positives = 240/430 (55%), Gaps = 11/430 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V ++ +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ D + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENV---ADEDI 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + + A G + + + +EET E+ + Sbjct: 359 YLDEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGIDITLQKK 427 E + Sbjct: 417 EEEGENSVEN 426 >gi|322377700|ref|ZP_08052190.1| transcription termination factor NusA [Streptococcus sp. M334] gi|321281465|gb|EFX58475.1| transcription termination factor NusA [Streptococcus sp. M334] Length = 378 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 216/380 (56%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 362 ---EEAGSVDLEAENDTVEE 378 >gi|15900465|ref|NP_345069.1| transcription elongation factor NusA [Streptococcus pneumoniae TIGR4] gi|111657275|ref|ZP_01408041.1| hypothetical protein SpneT_02001513 [Streptococcus pneumoniae TIGR4] gi|148983931|ref|ZP_01817250.1| transcription elongation factor NusA [Streptococcus pneumoniae SP3-BS71] gi|148990071|ref|ZP_01821325.1| transcription elongation factor NusA [Streptococcus pneumoniae SP6-BS73] gi|148992337|ref|ZP_01822060.1| transcription elongation factor NusA [Streptococcus pneumoniae SP9-BS68] gi|148998226|ref|ZP_01825695.1| transcription elongation factor NusA [Streptococcus pneumoniae SP11-BS70] gi|149005663|ref|ZP_01829402.1| transcription elongation factor NusA [Streptococcus pneumoniae SP18-BS74] gi|149012573|ref|ZP_01833570.1| transcription elongation factor NusA [Streptococcus pneumoniae SP19-BS75] gi|149021508|ref|ZP_01835563.1| transcription elongation factor NusA [Streptococcus pneumoniae SP23-BS72] gi|168482793|ref|ZP_02707745.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1873-00] gi|168488244|ref|ZP_02712443.1| transcription termination factor NusA [Streptococcus pneumoniae SP195] gi|168490557|ref|ZP_02714700.1| transcription termination factor NusA [Streptococcus pneumoniae CDC0288-04] gi|168576545|ref|ZP_02722419.1| transcription termination factor NusA [Streptococcus pneumoniae MLV-016] gi|169834095|ref|YP_001694040.1| transcription elongation factor NusA [Streptococcus pneumoniae Hungary19A-6] gi|182683486|ref|YP_001835233.1| transcription elongation factor NusA [Streptococcus pneumoniae CGSP14] gi|221231386|ref|YP_002510538.1| N utilization substance protein A [Streptococcus pneumoniae ATCC 700669] gi|225854094|ref|YP_002735606.1| transcription elongation factor NusA [Streptococcus pneumoniae JJA] gi|225856263|ref|YP_002737774.1| transcription elongation factor NusA [Streptococcus pneumoniae P1031] gi|225858391|ref|YP_002739901.1| transcription elongation factor NusA [Streptococcus pneumoniae 70585] gi|225860558|ref|YP_002742067.1| transcription elongation factor NusA [Streptococcus pneumoniae Taiwan19F-14] gi|237650175|ref|ZP_04524427.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI 1974] gi|237821775|ref|ZP_04597620.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI 1974M2] gi|298230907|ref|ZP_06964588.1| transcription elongation factor NusA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255627|ref|ZP_06979213.1| transcription elongation factor NusA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502347|ref|YP_003724287.1| transcription elongation factor NusA [Streptococcus pneumoniae TCH8431/19A] gi|303255252|ref|ZP_07341325.1| transcription elongation factor NusA [Streptococcus pneumoniae BS455] gi|303260042|ref|ZP_07346015.1| transcription elongation factor NusA [Streptococcus pneumoniae SP-BS293] gi|303261226|ref|ZP_07347174.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS292] gi|303263891|ref|ZP_07349812.1| transcription elongation factor NusA [Streptococcus pneumoniae BS397] gi|303267073|ref|ZP_07352944.1| transcription elongation factor NusA [Streptococcus pneumoniae BS457] gi|303269288|ref|ZP_07355062.1| transcription elongation factor NusA [Streptococcus pneumoniae BS458] gi|307126756|ref|YP_003878787.1| transcription termination factor NusA [Streptococcus pneumoniae 670-6B] gi|14972027|gb|AAK74709.1| N utilization substance protein A [Streptococcus pneumoniae TIGR4] gi|147755869|gb|EDK62913.1| transcription elongation factor NusA [Streptococcus pneumoniae SP11-BS70] gi|147762603|gb|EDK69563.1| transcription elongation factor NusA [Streptococcus pneumoniae SP18-BS74] gi|147763378|gb|EDK70315.1| transcription elongation factor NusA [Streptococcus pneumoniae SP19-BS75] gi|147924078|gb|EDK75190.1| transcription elongation factor NusA [Streptococcus pneumoniae SP3-BS71] gi|147924597|gb|EDK75684.1| transcription elongation factor NusA [Streptococcus pneumoniae SP6-BS73] gi|147928963|gb|EDK79975.1| transcription elongation factor NusA [Streptococcus pneumoniae SP9-BS68] gi|147930204|gb|EDK81189.1| transcription elongation factor NusA [Streptococcus pneumoniae SP23-BS72] gi|168996597|gb|ACA37209.1| transcription termination factor NusA [Streptococcus pneumoniae Hungary19A-6] gi|172043571|gb|EDT51617.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1873-00] gi|182628820|gb|ACB89768.1| transcription elongation factor NusA [Streptococcus pneumoniae CGSP14] gi|183573000|gb|EDT93528.1| transcription termination factor NusA [Streptococcus pneumoniae SP195] gi|183574829|gb|EDT95357.1| transcription termination factor NusA [Streptococcus pneumoniae CDC0288-04] gi|183577711|gb|EDT98239.1| transcription termination factor NusA [Streptococcus pneumoniae MLV-016] gi|220673846|emb|CAR68349.1| putative putative N utilization substance protein A [Streptococcus pneumoniae ATCC 700669] gi|225720770|gb|ACO16624.1| transcription termination factor NusA [Streptococcus pneumoniae 70585] gi|225723031|gb|ACO18884.1| transcription termination factor NusA [Streptococcus pneumoniae JJA] gi|225725477|gb|ACO21329.1| transcription termination factor NusA [Streptococcus pneumoniae P1031] gi|225727542|gb|ACO23393.1| transcription termination factor NusA [Streptococcus pneumoniae Taiwan19F-14] gi|298237942|gb|ADI69073.1| transcription elongation factor NusA [Streptococcus pneumoniae TCH8431/19A] gi|301793757|emb|CBW36144.1| putative putative N utilization substance protein A [Streptococcus pneumoniae INV104] gi|301799610|emb|CBW32165.1| putative putative N utilization substance protein A [Streptococcus pneumoniae OXC141] gi|301801434|emb|CBW34121.1| putative putative N utilization substance protein A [Streptococcus pneumoniae INV200] gi|302597793|gb|EFL64866.1| transcription elongation factor NusA [Streptococcus pneumoniae BS455] gi|302637360|gb|EFL67847.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS292] gi|302638737|gb|EFL69199.1| transcription elongation factor NusA [Streptococcus pneumoniae SP-BS293] gi|302641185|gb|EFL71558.1| transcription elongation factor NusA [Streptococcus pneumoniae BS458] gi|302643401|gb|EFL73677.1| transcription elongation factor NusA [Streptococcus pneumoniae BS457] gi|302646296|gb|EFL76522.1| transcription elongation factor NusA [Streptococcus pneumoniae BS397] gi|306483818|gb|ADM90687.1| transcription termination factor NusA [Streptococcus pneumoniae 670-6B] gi|327390293|gb|EGE88634.1| transcription termination factor NusA [Streptococcus pneumoniae GA04375] gi|332074367|gb|EGI84843.1| transcription termination factor NusA [Streptococcus pneumoniae GA17570] gi|332076389|gb|EGI86852.1| transcription termination factor NusA [Streptococcus pneumoniae GA41301] gi|332202437|gb|EGJ16506.1| transcription termination factor NusA [Streptococcus pneumoniae GA41317] gi|332204573|gb|EGJ18638.1| transcription termination factor NusA [Streptococcus pneumoniae GA47901] Length = 378 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 218/380 (57%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + ++ V+E Sbjct: 362 ---EDAASVELEVENDTVEE 378 >gi|111023601|ref|YP_706573.1| transcription elongation factor NusA [Rhodococcus jostii RHA1] gi|110823131|gb|ABG98415.1| transcription elongation protein NusA [Rhodococcus jostii RHA1] Length = 343 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 30/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + V+S + ++ A R G R++++ ++G + + Sbjct: 5 IAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A D D ++ G D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 --------------AHDVDADGNMVGEEWDD-TPEGFGRIAATTARQVILQRLRDAEHER 103 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 + E+ GEI+ G ++R N V+V +G ++G+I E + EN G+R Sbjct: 104 SFGEYSTHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGER 163 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 164 LKCYVVGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAV 223 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V V Sbjct: 224 QSRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTV 283 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VDPDARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 328 >gi|154491955|ref|ZP_02031581.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC 43184] gi|154088196|gb|EDN87241.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC 43184] Length = 424 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 137/414 (33%), Positives = 238/414 (57%), Gaps = 12/414 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D + ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLFAKYKDKIGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + E++SLAIG+ G N++LA LT + ID+ + E + + + Sbjct: 302 SIRVNEEEHKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYAIDVFRDVEGA----DEEDI 357 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D + L G + + + EI +E+T E+ Sbjct: 358 YLDEFSD--EIDSWVIEALKNIGCYTAKSVLAMNREEIVERADLEEQTVDEVLA 409 >gi|149002224|ref|ZP_01827166.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS69] gi|168485664|ref|ZP_02710172.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1087-00] gi|147759539|gb|EDK66530.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS69] gi|183571232|gb|EDT91760.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1087-00] Length = 378 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 217/380 (57%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + ++ V+E Sbjct: 362 ---EDAASVELEVENDTVEE 378 >gi|226366090|ref|YP_002783873.1| transcription elongation factor NusA [Rhodococcus opacus B4] gi|226244580|dbj|BAH54928.1| transcription elongation protein NusA [Rhodococcus opacus B4] Length = 343 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 197/345 (57%), Gaps = 30/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + V+S + ++ A R G R++++ ++G + + Sbjct: 5 IAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A D D ++ G D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 --------------AHDVDSDGNMVGEEWDD-TPEGFGRIAATTARQVILQRLRDAEHER 103 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 + E+ GEI+ G ++R N V+V +G ++G+I E + EN G+R Sbjct: 104 SFGEYSTHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGER 163 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 164 LKCYVVGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAV 223 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V V Sbjct: 224 QSRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTV 283 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VDPEARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDA 328 >gi|327462402|gb|EGF08727.1| N utilization substance protein A [Streptococcus sanguinis SK1057] Length = 420 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSGAEATDFDAVAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|294815429|ref|ZP_06774072.1| Transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] gi|326443782|ref|ZP_08218516.1| transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] gi|294328028|gb|EFG09671.1| Transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] Length = 335 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 127/340 (37%), Positives = 195/340 (57%), Gaps = 22/340 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A EK I D+++ + ++ A G+ R E++ +TG ++++ Sbjct: 5 VKLLKGLAQEKEIPFDLLVEAIESALLIAYHRTEGSRRHARAELSRQTGHVTVWAE---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P DFGR+A +A+QVI Q++R+AE D Sbjct: 61 ---EDPA---DLEEGQEPK---------EFDDTPSDFGRIAATTARQVIQQRLRDAENDV 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G+++SG V++ + NV+V L + ++ E + E G R+++Y+ Sbjct: 106 TFGEYARREGDVVSGQVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYPHGLRLRTYVV 165 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 166 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 225 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 LNAKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGAR 285 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 325 >gi|327467113|gb|EGF12623.1| N utilization substance protein A [Streptococcus sanguinis SK330] Length = 420 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 134/416 (32%), Positives = 227/416 (54%), Gaps = 16/416 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 R-QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + Q + + ++ + A D + +A + E A +E EE Sbjct: 364 EAANELGGFAQEAEEILGDAAVLETEVSAAEATDFDAVAEETVLETAGLESEAEEL 419 >gi|307702469|ref|ZP_07639424.1| transcription elongation protein nusA [Streptococcus oralis ATCC 35037] gi|307623963|gb|EFO02945.1| transcription elongation protein nusA [Streptococcus oralis ATCC 35037] Length = 374 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 27/386 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAME-- 358 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAE 379 +A VD A L+ E Sbjct: 359 ----------EAGQVDYAAADELIEE 374 >gi|332364628|gb|EGJ42397.1| N utilization substance protein A [Streptococcus sanguinis SK1059] Length = 420 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSAAEATDFDAAAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|227537266|ref|ZP_03967315.1| transcription elongation factor NusA [Sphingobacterium spiritivorum ATCC 33300] gi|300772910|ref|ZP_07082779.1| transcription termination factor NusA [Sphingobacterium spiritivorum ATCC 33861] gi|227242870|gb|EEI92885.1| transcription elongation factor NusA [Sphingobacterium spiritivorum ATCC 33300] gi|300759081|gb|EFK55908.1| transcription termination factor NusA [Sphingobacterium spiritivorum ATCC 33861] Length = 412 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 232/408 (56%), Gaps = 10/408 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L+ K+IDR V+SV+ + + R +GT ++ V +NP+ GD+ ++R Sbjct: 4 NINLIDSFQEFKEFKNIDRPTVISVLEEVFRSMIRKRFGTDENVDVIVNPDNGDLEIWRT 63 Query: 66 LEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ E+ +I L A D +++G + + FGR A+ +A+Q ++ K+ Sbjct: 64 RVVVEDEFSEDDDLEIELAEAVKHDADLEVGDDYIEQITLESFGRRAILAARQTLVSKIL 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E E+D + ++KD+ GE++ G V ++ ++V D ++ ++ + E I + + GD + Sbjct: 124 ELEKDEVFKKYKDREGELVIGEVYQIWKKEILVLDDDGNELILPKTEQIPADYFKKGDSI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ ++ V P++++SRT P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV Sbjct: 184 RAVVHKVDMMNNNPKIIISRTAPAFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVE 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + +D Sbjct: 244 SYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINFTTNHSLYITRALSPARISSIKID 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED V + +Q+SLAIGR G N++LA +LTG+ ID+ E ++ D + + F Sbjct: 304 EDNKTAAVYLKSDQVSLAIGRGGHNIKLAGKLTGYEIDVYRENDEF-----DEDVDIEEF 358 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 ++ + L G + + + E+ +E+T EI Sbjct: 359 SD--EIEGWVIDELKRVGLDTAKSVLSLTEEELVRRTDLEEDTIQEIV 404 >gi|332366408|gb|EGJ44159.1| N utilization substance protein A [Streptococcus sanguinis SK355] Length = 417 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 136/419 (32%), Positives = 227/419 (54%), Gaps = 21/419 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSVAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNEEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + F Q +EI+A V E + + G + E A E+ Sbjct: 364 ---EAANELGGFAQ--EAEEILADADVLETEFSATDFDAAAEETVLETAGLESE-AEEL 416 >gi|149277310|ref|ZP_01883452.1| transcription elongation factor NusA [Pedobacter sp. BAL39] gi|149232187|gb|EDM37564.1| transcription elongation factor NusA [Pedobacter sp. BAL39] Length = 411 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 138/421 (32%), Positives = 238/421 (56%), Gaps = 13/421 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + N ++ Q K+IDR V+SV+ + + R YGT + V +NP+ GD+ Sbjct: 1 MSNINLIDSFQEFKDF---KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDL 57 Query: 61 SLFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R +V+E+ E+ +I L + D +++G + + FGR A+ +A+Q + Sbjct: 58 EIWRTRKVMEDGFSEDDDLEIELAEVKLLDADMEVGDDYIEQITLESFGRRAILAARQTL 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 + KV E E+D + ++KD+VGEI++G V +V +V D ++ ++ + E I + + Sbjct: 118 VSKVLELEKDEIFKKYKDRVGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFK 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD V++ I V P++++SR P F+ +LF +EVPEI++G++ +K + R+PG RA Sbjct: 178 KGDTVRAVILKVDMVNATPKIIISRIAPDFLQRLFEIEVPEIFDGLITIKKIVREPGERA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T Sbjct: 238 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKIT 297 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + LD++ V + +Q+SLAIGR G N++LA +LTG+ ID+ E ++D + Sbjct: 298 SIKLDDETKHASVYLKPDQVSLAIGRGGHNIKLAGKLTGYEIDVYREA-----GEEDEDV 352 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F +D I L A G + + + I E+ +EET E+ + Sbjct: 353 DIEEFSD--EIDSWIIDELKAIGCDTAKSVLALSIDELVKRTDLEEETIKEVMSILKSEF 410 Query: 418 E 418 E Sbjct: 411 E 411 >gi|237743254|ref|ZP_04573735.1| transcription elongation factor NusA [Fusobacterium sp. 7_1] gi|256028609|ref|ZP_05442443.1| transcription elongation factor NusA [Fusobacterium sp. D11] gi|260495123|ref|ZP_05815252.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33] gi|289766527|ref|ZP_06525905.1| transcription elongation factor NusA [Fusobacterium sp. D11] gi|229433033|gb|EEO43245.1| transcription elongation factor NusA [Fusobacterium sp. 7_1] gi|260197566|gb|EEW95084.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33] gi|289718082|gb|EFD82094.1| transcription elongation factor NusA [Fusobacterium sp. D11] Length = 359 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 128/360 (35%), Positives = 220/360 (61%), Gaps = 4/360 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI Sbjct: 1 MKAKDSKNFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVTVDRENGDI 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F VV +++ + +ISL+ A+ + IG ++ + +F R AVQ+ KQ++ Sbjct: 61 KVFASKTVVAADDLLDPNEEISLEDAKKIKKRVKIGDILKFEVDCENFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGVELILPPAEQSVSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYVLSVEKTSKFPKILISRRNEGLLRKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+ +ID +GAC+G +G+R++ +V EL E+IDIV W P FV L PA+V Sbjct: 241 KVAVYSAVPNIDTIGACIGQKGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVE 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI ++D ++ +E Sbjct: 301 SVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDKDKETLKEGEDE 359 >gi|182435606|ref|YP_001823325.1| transcription elongation factor NusA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776240|ref|ZP_08235505.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|178464122|dbj|BAG18642.1| putative transcriptional termination/antitermination factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656573|gb|EGE41419.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 346 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 129/346 (37%), Positives = 200/346 (57%), Gaps = 22/346 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A +K I DV++ + ++ A G+ RVE++ G ++++ Sbjct: 5 VKLLKGLAQDKEIPFDVLVGAIESALLIAYHRTDGSHRRARVELD-ANGHVTVWAK---- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D+ Sbjct: 60 ---EDPA---DLEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDK 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ Sbjct: 105 TFGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKMEAMLPVQEQVPGEEYVHGLRLRTYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + + Sbjct: 165 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 225 NPKGACIGPMGSRVRNVMAELHGEKIDIVDWSEDPAEMVANALSPARVSKVEVVDLGARS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+ Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEEREN 330 >gi|254302278|ref|ZP_04969636.1| N utilization substance protein A [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322470|gb|EDK87720.1| N utilization substance protein A [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 357 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 130/356 (36%), Positives = 218/356 (61%), Gaps = 4/356 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRENGDI 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F +V +E+ + +ISL+ A+ I +G + + DF R AVQ+ KQ++ Sbjct: 61 KVFASKIIVNTDELLDPNKEISLEDAKQIKKRIKVGDTLKFEVNCEDFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSVSDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYVLSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI E +++ ++ Sbjct: 301 NVTILED-GTARVLVAPSQLSLAIGKNGQNARLAARLTGMRVDIKVIENETLKEEE 355 >gi|282861439|ref|ZP_06270504.1| NusA antitermination factor [Streptomyces sp. ACTE] gi|282564097|gb|EFB69634.1| NusA antitermination factor [Streptomyces sp. ACTE] Length = 343 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 201/345 (58%), Gaps = 22/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +++ +A +K I DV++ + ++ A G+ RVE++ G ++++ Sbjct: 5 VKLLKGLAQDKEIPFDVLVGAIESALLIAYHRTEGSHRRARVELD-AAGHVTVWAK---- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + A++ D P FGR+A +AKQVI+Q++R+AE DR Sbjct: 60 ---EDPADLEEGQEAKEFDD------------TPSGFGRIAASTAKQVILQRLRDAEDDR 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ Sbjct: 105 TFGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + + Sbjct: 165 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V++V V+D Sbjct: 225 NPKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSEVEVVDLGARS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+ Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEERE 329 >gi|25010487|ref|NP_734882.1| transcription elongation factor NusA [Streptococcus agalactiae NEM316] gi|76788260|ref|YP_329098.1| transcription elongation factor NusA [Streptococcus agalactiae A909] gi|161485616|ref|NP_687412.2| transcription elongation factor NusA [Streptococcus agalactiae 2603V/R] gi|23094840|emb|CAD46058.1| Unknown [Streptococcus agalactiae NEM316] gi|76563317|gb|ABA45901.1| transcription termination factor NusA [Streptococcus agalactiae A909] Length = 383 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + Sbjct: 2 SKEMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y Sbjct: 122 MREVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 S++D +G VG GS ++ V++ +E ID++ W D A F+ NA+ Sbjct: 242 SNVDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKM 361 Query: 351 RQKDFNE 357 ++ Sbjct: 362 EAQELQT 368 >gi|269303191|gb|ACZ33291.1| transcription termination factor NusA [Chlamydophila pneumoniae LPCoLN] Length = 434 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 145/430 (33%), Positives = 233/430 (54%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F Sbjct: 2 NKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR G N+I+DLG + ++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV S Sbjct: 182 LLYEVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I ++V + IG+RG N RL SQ+ + +++ E + + + Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + +++ L G+ + + +++AS+ G E A +I + +Y Sbjct: 362 PHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 E + Sbjct: 422 GESKVDEKPE 431 >gi|194398628|ref|YP_002037214.1| transcription elongation factor NusA [Streptococcus pneumoniae G54] gi|194358295|gb|ACF56743.1| transcription termination factor NusA [Streptococcus pneumoniae G54] Length = 378 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 218/380 (57%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDENDSKRALVVVPXNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + ++ V+E Sbjct: 362 ---EDAASVELEVENDTVEE 378 >gi|325299860|ref|YP_004259777.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170] gi|324319413|gb|ADY37304.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170] Length = 423 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 230/414 (55%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EV Sbjct: 10 LIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREV 69 Query: 69 V--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V E+ N QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E Sbjct: 70 VADEDFANPNRQISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELE 129 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSY 185 +D Y ++ D+VG II+ V ++ +++ D ++ ++ + E I + R G+ V++ Sbjct: 130 KDSLYNKYIDRVGTIIAAEVYQIWKKEILLLDDEGNELLLPKAEQIPSDFYRKGETVRAV 189 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + P+++LSRT P+F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 190 VARVDNKNNNPKIILSRTAPEFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYD 249 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ +V+ E+ Sbjct: 250 DRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPATVSSIVMHEEE 309 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R EV + E++SLAIG+ G N++LAS LT +TID+ E +++ D + F Sbjct: 310 KRAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYREVDENAV---DEDIYLDEFKD- 365 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D + + G + + + +E T ++ + E Sbjct: 366 -EIDGWVIDAIKGIGIETAKGVLNAPREMLIEKADLEENTVDDVLRILKAEFEE 418 >gi|19705318|ref|NP_602813.1| transcription elongation factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328566|ref|ZP_06871085.1| transcription termination factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713289|gb|AAL94112.1| N utilization substance protein A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154375|gb|EFG95174.1| transcription termination factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 357 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 128/356 (35%), Positives = 218/356 (61%), Gaps = 4/356 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRENGDI 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F +V +++ + +ISL+ A+ + +G + + DF R AVQ+ KQ++ Sbjct: 61 KVFASKIIVNADDLLDPNKEISLEDAKKIKKRVKVGDTLKFEVNCEDFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSISDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVIEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ ++ Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDSEALKEEE 355 >gi|218264757|ref|ZP_03478469.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii DSM 18315] gi|218221806|gb|EEC94456.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii DSM 18315] Length = 424 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 138/429 (32%), Positives = 241/429 (56%), Gaps = 12/429 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D + ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLFAKYKDKIGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + +++SLAIG+ G N++LA LT + ID+ + E + + + Sbjct: 302 SIRVNEEERKAEVYLHPDEVSLAIGKGGLNIKLACMLTEYAIDVFRDLEGA----DEEDI 357 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +D + L G + + + EI +E+T E+ Sbjct: 358 YLDEFSD--EIDSWVIEALKNIGCYTAKSVLAMSREEIIERADLEEQTVDEVLAILSAEF 415 Query: 418 EGIDITLQK 426 E Q+ Sbjct: 416 EEEQDETQE 424 >gi|327472754|gb|EGF18181.1| N utilization substance protein A [Streptococcus sanguinis SK408] Length = 420 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADADVLE--------TEVSAAEATDFDAVAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|195977581|ref|YP_002122825.1| transcription elongation factor NusA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869110|ref|YP_002745058.1| N utilization substance protein A [Streptococcus equi subsp. zooepidemicus] gi|225869938|ref|YP_002745885.1| N utilization substance protein A [Streptococcus equi subsp. equi 4047] gi|195974286|gb|ACG61812.1| transcription termination protein NusA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699342|emb|CAW92741.1| putative N utilization substance protein A [Streptococcus equi subsp. equi 4047] gi|225702386|emb|CAX00230.1| putative N utilization substance protein A [Streptococcus equi subsp. zooepidemicus] Length = 384 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 209/370 (56%), Gaps = 15/370 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIEAVTESLKSAYKRRYGQAESCVIEFNDKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A + ++G + +FGRVA QSAKQ I++++R Sbjct: 62 REVVEEVFDSRLEISLNDALAISSAYELGDKIRFEESVSEFGRVAAQSAKQTIMERMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 122 MREITFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDDDDLKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYERL 361 Query: 351 RQKDFNERTQ 360 + T+ Sbjct: 362 EAEKEAAMTE 371 >gi|237742964|ref|ZP_04573445.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13] gi|256846936|ref|ZP_05552390.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2] gi|229430612|gb|EEO40824.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13] gi|256717734|gb|EEU31293.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2] Length = 357 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 129/356 (36%), Positives = 218/356 (61%), Gaps = 4/356 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVFASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDNIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSLSDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ ++ Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDNETLKEEE 355 >gi|262282171|ref|ZP_06059940.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA] gi|262262625|gb|EEY81322.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA] Length = 413 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 123/361 (34%), Positives = 206/361 (57%), Gaps = 15/361 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + Sbjct: 2 SKEMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 122 TRTITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMVPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFNAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 R 351 Sbjct: 362 E 362 >gi|298242762|ref|ZP_06966569.1| transcription termination factor NusA [Ktedonobacter racemifer DSM 44963] gi|297555816|gb|EFH89680.1| transcription termination factor NusA [Ktedonobacter racemifer DSM 44963] Length = 374 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 143/342 (41%), Positives = 216/342 (63%), Gaps = 8/342 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R E + EK + R+VV+ +A+++ A R +G ++R+E++ + G++ ++ Sbjct: 2 RSEFQAAIAQLIAEKGLPREVVMETVANALLAAYRKSFGGGENVRIEVD-KNGEVHVWAS 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +V + +ISL A+ P+ +G ++ F R+ Q+AKQVI+Q++REA Sbjct: 61 KRVVAQVNDSNEEISLAEAQRLVPNAALGQLLDVD-SSFIFSRIPTQTAKQVILQRIREA 119 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD-----LGNSDGVIRRDETISRENLRPGD 180 E + Y + K VGEI GT+ R E +VD + +G++ ETI E+ R Sbjct: 120 EHEHLYEQVKGWVGEIRLGTLIREEQRGWVVDFDLDKVDKVEGLMPISETIPGEHYRMKQ 179 Query: 181 RVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R++ YIYDVRR + R Q+L+SRTH + +LF EVPEIY+G V++KA++R+PGSRAK+ Sbjct: 180 RLRLYIYDVRRIQGRMLQILVSRTHRDLVRRLFENEVPEIYDGSVEIKAITREPGSRAKV 239 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV++ +DP+G+CVG+RG R+ +V EL DEKIDI+ WSPD+A+FV NAL P KV Sbjct: 240 AVYARQEGLDPIGSCVGVRGQRISNIVRELNDEKIDIIQWSPDTASFVANALSPVKPLKV 299 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L + V VP+ QLSLAIG+ GQN RLA++LTGW +D+ Sbjct: 300 ELRDSDHTAIVTVPERQLSLAIGKDGQNARLAAKLTGWRVDV 341 >gi|116514302|ref|YP_813208.1| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093617|gb|ABJ58770.1| Transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 406 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 140/377 (37%), Positives = 222/377 (58%), Gaps = 8/377 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 2 SKEMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REA Sbjct: 62 KTVVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKS 184 E E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ Sbjct: 122 ENAHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+ Sbjct: 182 LVTKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V + Sbjct: 242 DPNIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDE 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +D + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 302 DDKRKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVA 361 Query: 363 MQAINVDEIIAHLLVAE 379 D+ + V E Sbjct: 362 E-----DQDLQQAAVEE 373 >gi|282879392|ref|ZP_06288135.1| transcription termination factor NusA [Prevotella buccalis ATCC 35310] gi|281298505|gb|EFA90931.1| transcription termination factor NusA [Prevotella buccalis ATCC 35310] Length = 421 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 140/414 (33%), Positives = 231/414 (55%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKDTKNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRIV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EV + +ISLK AR+ + + G VS+ + FGR A+ + +Q + KV E E Sbjct: 73 VPDGEVADENKEISLKEAREIEDDYEEGEEVSEQIDFAKFGRRAILNLRQTLKSKVLELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V ++ V+ VD N++ ++ + E I + R G+ +++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQIWKREVLLVDDENNELILPKSEQIPADQYRKGETIRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPVFLERLLEAEVPEINDGLISIKKIARMPGERAKVAVESYD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA ++ + LDE+ Sbjct: 253 DRIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPARISSINLDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E D+ D + + F Sbjct: 313 RKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVYREVSDA---DADEDIYLEEFND- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ I + G +++ + +EET + + E Sbjct: 369 -EIDQWIIDAIKGIGLDTAKQVLNAPREMLIEKADLEEETVDHLIRVLKSEFEQ 421 >gi|240172759|ref|ZP_04751418.1| transcription elongation factor NusA [Mycobacterium kansasii ATCC 12478] Length = 347 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 130/361 (36%), Positives = 201/361 (55%), Gaps = 31/361 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ ++G + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLSAYRHTQGHQTDARIEIDRKSGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARELDDEGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D++ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Q + Sbjct: 283 IDQNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPAHPAGQPEQGASRG 342 Query: 361 F 361 Sbjct: 343 M 343 >gi|324991725|gb|EGC23657.1| N utilization substance protein A [Streptococcus sanguinis SK353] Length = 420 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 140/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + ++LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYINLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSAAEATDFDAAAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|120403303|ref|YP_953132.1| transcription elongation factor NusA [Mycobacterium vanbaalenii PYR-1] gi|119956121|gb|ABM13126.1| NusA antitermination factor [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 199/354 (56%), Gaps = 31/354 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G +D ++I+ +TG + + Sbjct: 1 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKV------- 53 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR D ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 54 -------------IARQTDEDGNVLHEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 98 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF + G+I++G ++R N V+V +G S+GVI E + E GDR Sbjct: 99 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 158 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 159 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 218 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 219 ATRAPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTV 278 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +DE VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ ++ Sbjct: 279 IDEAARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDAAKEGAVEE 332 >gi|297626628|ref|YP_003688391.1| Transcription termination/ antitermination factor NusA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922393|emb|CBL56965.1| Transcription termination/ antitermination factor NusA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 352 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 138/338 (40%), Positives = 196/338 (57%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +EK I D ++ + D++ A V +N TG++S+ V Sbjct: 5 MTALRALEHEKEIPLDYLVGTLEDALLNAYEKTEHPKPGAHVVLNRRTGEVSVM-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EV + + G D P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 PEV---------------NDEGESVGEYDD--TPTDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Y +F G+++ G V++ I VDLG+ + ++ E + E+ + G R++ Y+ Sbjct: 103 KYGKFSAVEGDVVMGVVQQDRGSKTIRVDLGDIEAIMPLAEQVPGEDYKHGTRLRVYVVT 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+E RGPQV++SRTHP + KLF +EVPEI G+V+VKA++R+ G R K+AV S + + Sbjct: 163 VRKEARGPQVVVSRTHPNLVKKLFELEVPEIEQGVVEVKAIARESGHRTKIAVVSHNPDV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 GAC+G G RV+AV+ EL DEKIDI+ WS D A FV NAL PA KV V+D Sbjct: 223 SAKGACIGPMGQRVRAVMRELNDEKIDIIDWSADPAEFVANALSPAKALKVTVVDAGARA 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIGR GQN RLA++LTGW IDI + Sbjct: 283 ARVIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDT 320 >gi|324994121|gb|EGC26035.1| N utilization substance protein A [Streptococcus sanguinis SK678] Length = 420 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 138/418 (33%), Positives = 227/418 (54%), Gaps = 28/418 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSAAEATDFDAAAEETVLE 408 >gi|257463891|ref|ZP_05628277.1| transcription elongation factor NusA [Fusobacterium sp. D12] gi|317061420|ref|ZP_07925905.1| transcription elongation factor NusA [Fusobacterium sp. D12] gi|313687096|gb|EFS23931.1| transcription elongation factor NusA [Fusobacterium sp. D12] Length = 353 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 211/345 (61%), Gaps = 3/345 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ + + EK I ++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDAKAFLEALNELEKEKGIAKESLLQAVEQALLTAYKKNYGDEENVEVIIDRENGDV 60 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + VVEE + + +ISL+ AR +G + + F R A+Q+ KQ+I Sbjct: 61 KVYEVKTVVEEEDLYDAALEISLEEARKISRKAKLGEEIRIEVDCESFRRNAIQNGKQII 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R+ E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCISDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGVIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S ++ID VGAC+G + SR++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELANIDIVGACIGQKRSRIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDIK 345 >gi|310778372|ref|YP_003966705.1| transcription termination factor NusA [Ilyobacter polytropus DSM 2926] gi|309747695|gb|ADO82357.1| transcription termination factor NusA [Ilyobacter polytropus DSM 2926] Length = 356 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 135/356 (37%), Positives = 210/356 (58%), Gaps = 4/356 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59 M S + L+ + EK I ++ ++ + ++ A + YG I VEIN E+GD Sbjct: 1 MKSKDAKVFLEALTELEKEKGISKESLIETVEQALLAAYKKHYGEEDSSIEVEINRESGD 60 Query: 60 ISLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + ++ + VVE ++ + C+I L+ A +G V+ + +F R A+Q+ KQ+ Sbjct: 61 VKVYEIKTVVEAEDLYDSACEIILEDALLEKKRAKVGDVLKIEVNCEEFRRNAIQNGKQI 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENL 176 +IQKVREAER + +FK + +II+G ++R++ N+ ++ + ++ E + Sbjct: 121 VIQKVREAERQFVFDKFKSREKDIINGIIRRIDDRRNIFIEFDGIEAMLPIVEQSPSDVY 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R GDR+K Y+ +V + R P++L+SR H + KLF +E+PEI +G++++KAV+R+ GSR Sbjct: 181 RVGDRLKVYVVEVEKTSRFPKILISRKHEGLLKKLFELEIPEIEDGLIEIKAVAREAGSR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV+S + ID VGAC+G +G R++ VV EL EKIDIV W FV AL PA V Sbjct: 241 AKVAVYSENKEIDTVGACIGQKGLRIKNVVNELNGEKIDIVEWLDSQEEFVSAALSPAKV 300 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI T E + Sbjct: 301 MSVEVLEDQVTARVIVDTSQLSLAIGKNGQNARLAAKLTGMRVDIKTPEAAAEEEN 356 >gi|332362937|gb|EGJ40726.1| N utilization substance protein A [Streptococcus sanguinis SK49] Length = 420 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADADVLE--------TEVSAAEATDFDAAAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|319744370|gb|EFV96730.1| transcription termination factor NusA [Streptococcus agalactiae ATCC 13813] Length = 386 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + Sbjct: 5 SKEMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTV 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 65 REVVDEVFDSRLEISLKNALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQ 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y Sbjct: 125 MREVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVY 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 185 VYKVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 S++D +G VG GS ++ V++ +E ID++ W D A F+ NA+ Sbjct: 245 SNVDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAI 304 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 305 APAEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKM 364 Query: 351 RQKDFNE 357 ++ Sbjct: 365 EAQELQT 371 >gi|152965409|ref|YP_001361193.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216] gi|151359926|gb|ABS02929.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216] Length = 339 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 132/346 (38%), Positives = 198/346 (57%), Gaps = 28/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDISLFRL 65 + + E+ I + ++ + ++ A D RVE++ +G++ + Sbjct: 5 MAALRMLEREREIPFETLVRTIEQALLVAYHRTEHEDHKAHPDARVELDRASGEVRVL-- 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 A++RD + + G D P FGR+A +A+QVI+Q++R+A Sbjct: 63 ------------------AKERDDAGLVVGEFDD--TPSGFGRIAATTARQVILQRLRDA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E D E+ GEI+SG V++ + V VDLG+ +GV+ E + E G R++ Sbjct: 103 EDDAVIGEYAQTEGEIVSGVVQQGRDPRMVQVDLGSLEGVLPPQEQVPGEKYEHGSRLRC 162 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V++ +GPQV+LSR+HPQ + KLF +EVPEI +G VQ+ A+SR+ G R+K+AV ++ Sbjct: 163 FVVSVKKGPKGPQVVLSRSHPQLVKKLFALEVPEIADGTVQITALSREAGHRSKMAVRAT 222 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 ++ GAC+G G RV+AV+ ELR EKIDIV S D A FV NAL PA V+ V V+D Sbjct: 223 RGGVNAKGACIGPMGQRVRAVMAELRGEKIDIVDHSDDPAQFVGNALSPARVSSVEVVDL 282 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 283 AARSARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTEPTA 328 >gi|327459330|gb|EGF05676.1| N utilization substance protein A [Streptococcus sanguinis SK1] Length = 420 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 140/428 (32%), Positives = 229/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+ V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILGDAAVLE--------TEVSAAEATDFDAAAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|328944976|gb|EGG39133.1| N utilization substance protein A [Streptococcus sanguinis SK1087] Length = 420 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSAAEATDFDAAAEETILETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|325695172|gb|EGD37073.1| N utilization substance protein A [Streptococcus sanguinis SK150] Length = 420 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 142/428 (33%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V E V +E + EET VE Sbjct: 364 ---EAANELGGFAQ--EAEEILADADVLE--------TEVSAAEATDFDAAAEETVVETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|15675574|ref|NP_269748.1| transcription elongation factor NusA [Streptococcus pyogenes M1 GAS] gi|71911225|ref|YP_282775.1| transcription elongation factor NusA [Streptococcus pyogenes MGAS5005] gi|162139078|ref|YP_597145.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS9429] gi|162139127|ref|YP_601034.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS2096] gi|13622778|gb|AAK34469.1| transcription termination-antitermination factor [Streptococcus pyogenes M1 GAS] gi|71854007|gb|AAZ52030.1| N utilization substance protein A [Streptococcus pyogenes MGAS5005] Length = 385 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 132/382 (34%), Positives = 218/382 (57%), Gaps = 18/382 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 122 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRL 361 Query: 351 RQKDFNERTQFFMQAINVDEII 372 + + ++ VD+++ Sbjct: 362 ---EAEKEAATAVEEPVVDDVM 380 >gi|157151698|ref|YP_001449859.1| transcription elongation factor NusA [Streptococcus gordonii str. Challis substr. CH1] gi|157076492|gb|ABV11175.1| transcription termination factor NusA [Streptococcus gordonii str. Challis substr. CH1] Length = 413 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 123/361 (34%), Positives = 207/361 (57%), Gaps = 15/361 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + Sbjct: 2 SKEMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P++FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPVEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 122 TRTITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEIFASHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFNAEDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 R 351 Sbjct: 362 E 362 >gi|77414451|ref|ZP_00790602.1| transcription termination factor NusA [Streptococcus agalactiae 515] gi|77159496|gb|EAO70656.1| transcription termination factor NusA [Streptococcus agalactiae 515] Length = 381 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 209/364 (57%), Gaps = 15/364 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + EV Sbjct: 1 MLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 121 VTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ V++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPA 300 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEAQ 360 Query: 354 DFNE 357 + Sbjct: 361 ELQT 364 >gi|325697660|gb|EGD39545.1| N utilization substance protein A [Streptococcus sanguinis SK160] gi|327490545|gb|EGF22326.1| N utilization substance protein A [Streptococcus sanguinis SK1058] Length = 420 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 140/428 (32%), Positives = 229/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A V V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLG--------TEVSAAEATDFDAAAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|198277417|ref|ZP_03209948.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135] gi|198269915|gb|EDY94185.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135] Length = 419 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 137/414 (33%), Positives = 230/414 (55%), Gaps = 7/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EV Sbjct: 10 LIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREV 69 Query: 69 V--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EE+ N QI+L AR D S ++G V+D + FGR A+ + +Q + K+ E E Sbjct: 70 VADEELTNPNLQIALSEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELE 129 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSY 185 +D Y ++ DKVG +IS V ++ +++ D ++ ++ + E I + R G+ ++ Sbjct: 130 KDSLYNKYIDKVGTVISAEVYQIWKKEILLLDDEGNELLLPKTEQIPSDFYRKGETARAV 189 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + P+++LSRT P F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 190 VARVDNKNNNPKIILSRTSPVFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYD 249 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ +++ ED Sbjct: 250 ERIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKVSSIIMHEDE 309 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R EV + E++SLAIG+ G N++LAS LT +TID+ E + D + F Sbjct: 310 KRAEVYLKPEEVSLAIGKGGLNIKLASMLTEYTIDVYR--ELGEDAVADEDIYLDEFKD- 366 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +DE + + + A G + + + +E T ++ + E Sbjct: 367 -EIDEWVINAIKAIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILKAEFEE 419 >gi|162139854|ref|YP_619194.2| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 406 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 140/377 (37%), Positives = 222/377 (58%), Gaps = 8/377 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 2 SKEMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REA Sbjct: 62 KTVVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKS 184 E E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ Sbjct: 122 ENAHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+ Sbjct: 182 LVTKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V + Sbjct: 242 DPNIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDE 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +D + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 302 DDERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVA 361 Query: 363 MQAINVDEIIAHLLVAE 379 D+ + V E Sbjct: 362 E-----DQDLQQAAVEE 373 >gi|307710806|ref|ZP_07647234.1| transcription elongation protein nusA [Streptococcus mitis SK321] gi|307617412|gb|EFN96584.1| transcription elongation protein nusA [Streptococcus mitis SK321] Length = 374 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 215/377 (57%), Gaps = 18/377 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM--- 357 Query: 354 DFNERTQFFMQAINVDE 370 + + V+E Sbjct: 358 EEAGSIDLEAENETVEE 374 >gi|288800576|ref|ZP_06406034.1| transcription termination factor NusA [Prevotella sp. oral taxon 299 str. F0039] gi|288332789|gb|EFC71269.1| transcription termination factor NusA [Prevotella sp. oral taxon 299 str. F0039] Length = 421 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 227/413 (54%), Gaps = 8/413 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFKEFKDTKNIDRATLVSVLEESFRNVLAKLFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EV + +I+L A +P ++G VS+ + FGR A+ + +Q + KV E E Sbjct: 73 VANGEVSDENKEIALNDAIKIEPDYEVGEEVSERVNFAGFGRRAILNLRQTLASKVLELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IIS V +V V+ VD N++ + + E I + R G+ V++ Sbjct: 133 HDALYNKYKDRVGQIISAEVYQVWKREVLLVDDENNELKLPKSEQIPSDVYRKGETVRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P++ LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 193 IARVDNENNNPKIFLSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++G+R+ +V EL +E ID+V ++ ++ F+ AL PA++ + +DE+ Sbjct: 253 ERIDPVGACVGVKGNRIHGIVRELCNENIDVVNYTSNTKLFIQRALSPAVINSINIDEEA 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + EQ+SLAIGR G N++LAS LT +TID+ E ++ D + F Sbjct: 313 HKAEVFLQPEQVSLAIGRSGLNIKLASMLTEYTIDVFREINENE---ADEDIYLDEFAD- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D+ I + A G + + + +EET + R E Sbjct: 369 -EIDQWIIDSIKAIGLDTAKSVLSAPREMLIEKADLEEETVDHVLNVLRAEFE 420 >gi|307709807|ref|ZP_07646258.1| transcription elongation protein nusA [Streptococcus mitis SK564] gi|307619509|gb|EFN98634.1| transcription elongation protein nusA [Streptococcus mitis SK564] Length = 374 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 215/377 (57%), Gaps = 18/377 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM--- 357 Query: 354 DFNERTQFFMQAINVDE 370 + + V+E Sbjct: 358 EEAGSVDLEAENDTVEE 374 >gi|257465970|ref|ZP_05630281.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] gi|315917126|ref|ZP_07913366.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] gi|313691001|gb|EFS27836.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] Length = 353 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 210/345 (60%), Gaps = 3/345 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + VV E++ + +ISL+ A+ +G V + F R A+Q+ KQ++ Sbjct: 61 KVYEVKTVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R+ E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDIK 345 >gi|294784277|ref|ZP_06749572.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27] gi|294488143|gb|EFG35494.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27] Length = 357 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 129/356 (36%), Positives = 218/356 (61%), Gaps = 4/356 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVFASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPVEQSLSDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ ++ Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDNETLKEEE 355 >gi|183603429|ref|ZP_02716853.2| transcription termination factor NusA [Streptococcus pneumoniae CDC3059-06] gi|307067174|ref|YP_003876140.1| transcription elongation factor [Streptococcus pneumoniae AP200] gi|183576810|gb|EDT97338.1| transcription termination factor NusA [Streptococcus pneumoniae CDC3059-06] gi|306408711|gb|ADM84138.1| Transcription elongation factor [Streptococcus pneumoniae AP200] gi|332076985|gb|EGI87447.1| transcription termination factor NusA [Streptococcus pneumoniae GA17545] Length = 374 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 217/377 (57%), Gaps = 18/377 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM--- 357 Query: 354 DFNERTQFFMQAINVDE 370 + + ++ V+E Sbjct: 358 EDAASVELEVENDTVEE 374 >gi|28895281|ref|NP_801631.1| transcription elongation factor NusA [Streptococcus pyogenes SSI-1] gi|161485737|ref|NP_665302.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS315] gi|209559841|ref|YP_002286313.1| transcription elongation factor NusA [Streptococcus pyogenes NZ131] gi|28810527|dbj|BAC63464.1| putative transcription termination-antitermination factor [Streptococcus pyogenes SSI-1] gi|209541042|gb|ACI61618.1| Transcription termination protein NusA [Streptococcus pyogenes NZ131] Length = 385 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y Sbjct: 122 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRL 361 Query: 351 RQK 353 + Sbjct: 362 EAE 364 >gi|296122805|ref|YP_003630583.1| transcription termination factor NusA [Planctomyces limnophilus DSM 3776] gi|296015145|gb|ADG68384.1| transcription termination factor NusA [Planctomyces limnophilus DSM 3776] Length = 442 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 148/430 (34%), Positives = 244/430 (56%), Gaps = 32/430 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E+L+I D++ +KSID+++V + +I AAR +G I V I+ +G + Sbjct: 2 NGNEVLRIVDSIHRDKSIDKEIVFEGVEQAILSAARKHFGEEEVIEVHIDRTSGQPMVK- 60 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 R+ D ++G ++ GR++ Q+AKQV+IQK+RE Sbjct: 61 -----------------TNGREIDRD-ELGDIL---------GRISAQTAKQVMIQKIRE 93 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD + E+ G+I+SGTV R E + V++G ++ ++ R E I E+ RP +R+++ Sbjct: 94 AERDTLFDEYAQLRGQIVSGTVTRNEGSAITVNIGKAEAILPRSEMIPGESHRPNERIRA 153 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +V++ +V+LSR HP F+ +L +E+PE+ I+++++++R+ G R K+AV + Sbjct: 154 VVLEVKKMGPRVRVVLSRAHPDFVRRLLELEIPEVNERIIEIRSLAREAGYRTKVAVSCA 213 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DS+IDPVGACVG+RG+R++ V EL E+I++V W+ V NA++P+ V V+L Sbjct: 214 DSNIDPVGACVGVRGARIRNVGEELGGERIEVVRWNDSLQVLVPNAMQPSEVEDVILCPM 273 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +GR+ V+V +QLSLAIG+RGQNVRLAS+L GW ID++T EE + +Q Sbjct: 274 LGRVLVLVRDDQLSLAIGKRGQNVRLASKLVGWDIDVMTREELDQQLDQAVVAYSQ---- 329 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 V E +A LV++GF E+L+ ++ E+ + +E A I A E I+ Sbjct: 330 IPGVSEELAEGLVSQGFLSFEDLSVIEPDELMEMGSLTQEQADVIVEYAERESERIEKEQ 389 Query: 425 QKKIRELGVS 434 + Sbjct: 390 DLRRATEKAE 399 >gi|313124031|ref|YP_004034290.1| transcription elongation factor nusa [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280594|gb|ADQ61313.1| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685946|gb|EGD28009.1| N utilization substance protein A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 383 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 142/377 (37%), Positives = 223/377 (59%), Gaps = 8/377 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 2 SKEMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REA Sbjct: 62 KTVVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKS 184 E E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ Sbjct: 122 ENAHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVRV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+ Sbjct: 182 LVTKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V + Sbjct: 242 DPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDE 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +D + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 302 DDERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVA 361 Query: 363 MQAINVDEIIAHLLVAE 379 D+ + E Sbjct: 362 E-----DQDLQQTEAEE 373 >gi|326791500|ref|YP_004309321.1| NusA antitermination factor [Clostridium lentocellum DSM 5427] gi|326542264|gb|ADZ84123.1| NusA antitermination factor [Clostridium lentocellum DSM 5427] Length = 376 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 134/366 (36%), Positives = 212/366 (57%), Gaps = 28/366 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + D +A K I+++ ++ + SI+ A + +G +I++ I+ +TGD+ Sbjct: 2 NQEFIMAIDQIAKSKGINKEKLIDAIKQSIEVACKKHFGISTNGKQNIKINIDEKTGDVK 61 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 +F VV EEV N ++ + A++ + + + ++ + P +FGR+A Q+AKQV+I Sbjct: 62 VFAAKTVVPDEEVTNELLEVGITEAQNLNRLVQLDDIIDIEITPRNFGRIAAQNAKQVVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL--- 176 QK++EAER Y E+ K+ +I+ G V R E IV L ++ + E + +N Sbjct: 122 QKIKEAERQMVYEEYSVKLNDIVKGKVLRREKNGYIVQLDFTEASLPSTEAMPNDNFDEQ 181 Query: 177 -RPGDRV---KS-YIYDVRREQR------------GPQVLLSRTHPQFMVKLFHMEVPEI 219 D + K+ Y+ +V+ + G QV++SRTHP+ + +LF EV EI Sbjct: 182 MEMNDGIGTYKAFYLLNVKDFNKNENKLDGKSKNAGAQVIVSRTHPELVKRLFEQEVVEI 241 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 +G V +K+++R+ GSR K+AV+S+D +DPVGACVG +G R+ +V EL EKID+V W Sbjct: 242 KDGTVVIKSIAREAGSRTKIAVYSNDPLVDPVGACVGEKGKRINNIVQELNGEKIDVVHW 301 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 S D F+ AL PA V V L+E G +VIVP L+LAIG+ GQNVRLA++L G+ Sbjct: 302 SEDPKEFIREALSPAKVIDVELEETEGERNAKVIVPSHILTLAIGKGGQNVRLAAKLCGF 361 Query: 338 TIDIIT 343 IDI + Sbjct: 362 KIDIKS 367 >gi|323350354|ref|ZP_08086018.1| transcription elongation factor NusA [Streptococcus sanguinis VMC66] gi|322123427|gb|EFX95103.1| transcription elongation factor NusA [Streptococcus sanguinis VMC66] Length = 420 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 136/418 (32%), Positives = 224/418 (53%), Gaps = 28/418 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + F Q A +L E V +E + EET +E Sbjct: 364 ---EAANELGGFAQEAEEILAEAAVLETE----------VSAAEATDFDAAAEETVLE 408 >gi|282857788|ref|ZP_06266997.1| transcription termination factor NusA [Pyramidobacter piscolens W5455] gi|282584458|gb|EFB89817.1| transcription termination factor NusA [Pyramidobacter piscolens W5455] Length = 364 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 219/356 (61%), Gaps = 5/356 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ L + E+ + +V+ S + ++ A R D V I+ TG +S+F + Sbjct: 5 VDFLGALKQLGEERGLSEEVIFSSIEAALALAYRKFRDGKFDPVVAIDRATGSVSIFDVR 64 Query: 67 EVVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123 V+ + +ISL AR P + G V P+ P FGR+A Q+A+QVI Q+++ Sbjct: 65 RAVDAETHSDSEISLAEARALGYPDVREGDSVKVPVLEHPKSFGRIAAQTARQVITQRLK 124 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 +AER+ Y EF DK+G++I+ T+ + E ++V L S+ V+ R+E I+ E PG+ Sbjct: 125 DAEREIVYNEFNDKIGDLITATIFKAENDQILVRLSERSEAVLPREERIAGEVYTPGESK 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K ++ DVR+ RGP++++SRTHP + KL +E+PEI++G V++K + R+ G+RAK+AV Sbjct: 185 KFFLLDVRQTGRGPRIVVSRTHPGLLRKLLELEIPEIHDGTVEIKGIVREAGARAKVAVA 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D ++D VGACVG G+R++++ +L DEKIDI+VW+ D F+ NAL PA VT V Sbjct: 245 STDPAVDSVGACVGNSGARIRSISADLCDEKIDIIVWNEDPLEFIRNALSPARVTGVEAV 304 Query: 303 E-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 E +V P +QLSLAIG+ GQNVRLA++LTGW +DI T D+ + + E Sbjct: 305 EGQDRTAKVYAPADQLSLAIGKAGQNVRLAARLTGWKVDINTNTGDTPAGKPEIEE 360 >gi|307705617|ref|ZP_07642469.1| transcription elongation protein nusA [Streptococcus mitis SK597] gi|307620894|gb|EFN99978.1| transcription elongation protein nusA [Streptococcus mitis SK597] Length = 374 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 215/377 (57%), Gaps = 18/377 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM--- 357 Query: 354 DFNERTQFFMQAINVDE 370 + + V+E Sbjct: 358 EEAASVDLEAENDTVEE 374 >gi|325688733|gb|EGD30742.1| N utilization substance protein A [Streptococcus sanguinis SK115] Length = 420 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 138/418 (33%), Positives = 227/418 (54%), Gaps = 28/418 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADADVLE--------TEVSAAEATDFDAAAEETVLE 408 >gi|125718693|ref|YP_001035826.1| transcription elongation factor NusA [Streptococcus sanguinis SK36] gi|125498610|gb|ABN45276.1| N utilization substance protein A, putative [Streptococcus sanguinis SK36] Length = 420 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 140/428 (32%), Positives = 230/428 (53%), Gaps = 28/428 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + F Q +EI+A + E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAILE--------TEVSGAEATDFDAAAEETVLETA 410 Query: 411 GRAREYLE 418 G E E Sbjct: 411 GLESEAEE 418 >gi|315222140|ref|ZP_07864049.1| transcription termination factor NusA [Streptococcus anginosus F0211] gi|315188766|gb|EFU22472.1| transcription termination factor NusA [Streptococcus anginosus F0211] Length = 397 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 122 TRAITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPVEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDSEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQ 352 + Sbjct: 362 EE 363 >gi|323127911|gb|ADX25208.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 385 Score = 390 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 MREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 302 APAEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRF 361 Query: 351 RQK 353 + Sbjct: 362 EAE 364 >gi|76798057|ref|ZP_00780314.1| transcription termination factor NusA [Streptococcus agalactiae 18RS21] gi|77406370|ref|ZP_00783432.1| transcription termination factor NusA [Streptococcus agalactiae H36B] gi|77408786|ref|ZP_00785516.1| transcription termination factor NusA [Streptococcus agalactiae COH1] gi|77411664|ref|ZP_00788004.1| transcription termination factor NusA [Streptococcus agalactiae CJB111] gi|22533395|gb|AAM99284.1|AE014208_24 N utilization substance protein A [Streptococcus agalactiae 2603V/R] gi|76586616|gb|EAO63117.1| transcription termination factor NusA [Streptococcus agalactiae 18RS21] gi|77162308|gb|EAO73279.1| transcription termination factor NusA [Streptococcus agalactiae CJB111] gi|77172631|gb|EAO75770.1| transcription termination factor NusA [Streptococcus agalactiae COH1] gi|77175039|gb|EAO77846.1| transcription termination factor NusA [Streptococcus agalactiae H36B] Length = 379 Score = 390 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 209/364 (57%), Gaps = 15/364 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + EV Sbjct: 1 MLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 121 VTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ V++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPA 300 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEAQ 360 Query: 354 DFNE 357 + Sbjct: 361 ELQT 364 >gi|84498575|ref|ZP_00997338.1| transcription elongation factor NusA [Janibacter sp. HTCC2649] gi|84381108|gb|EAP96993.1| transcription elongation factor NusA [Janibacter sp. HTCC2649] Length = 385 Score = 390 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 201/360 (55%), Gaps = 25/360 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL--- 66 L + V E+ I DV++ + ++ A + G + R E++ +TG ++++ Sbjct: 5 LAVLRGVERERDISLDVLIPAIEQALLLAYQRTDGAYRNSRAELDRKTGHVTIWAREEFE 64 Query: 67 -----------------EVVEEVENYTCQISLK-VARDRDPSIDIGGVV--SDPLPPMDF 106 +V + + R P+ + P DF Sbjct: 65 VPVEEEPEAPAETPTPDTASADVAAPATESAGATEERVERPAPRMRREYGPEFDDTPTDF 124 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVI 165 GRVA +A+QVI+Q++R+ E D +FK + G+I++G +++ + +V VD G +G++ Sbjct: 125 GRVAAATARQVIVQRLRDIEDDAIMGDFKGREGDIVAGVIQQSPDPRHVTVDFGTVEGIL 184 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + E G R++ Y+ V+R RGPQ+ LSRTHP + KLF +EVPEI +G V+ Sbjct: 185 PVAEQVPGEKYVHGQRLRVYVVSVKRGLRGPQIGLSRTHPNLVRKLFALEVPEIADGSVE 244 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 + A++R+ G R K+AV + + ++ GAC+G G+RV+AV+ EL EKIDIV +S D A+ Sbjct: 245 IAALARESGHRTKIAVHTKVAGLNAKGACIGPMGARVRAVMAELHGEKIDIVDFSEDPAS 304 Query: 286 FVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 F+ +AL P+ V V ++D + VIVP QLSLAIGR GQN RLA++LTGW IDI ++ Sbjct: 305 FIASALSPSRVQSVEIVDWQLRAARVIVPDYQLSLAIGREGQNARLAAKLTGWRIDIRSD 364 >gi|322386001|ref|ZP_08059641.1| transcription elongation factor NusA [Streptococcus cristatus ATCC 51100] gi|321269984|gb|EFX52904.1| transcription elongation factor NusA [Streptococcus cristatus ATCC 51100] Length = 413 Score = 390 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 133/404 (32%), Positives = 218/404 (53%), Gaps = 16/404 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFHVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A ++ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPTEENIDVIEWVSDPAEYIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFHAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEFEAM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + VD A E D E +++ E Sbjct: 364 EAANELGGFGQDYVPTEVDAPSAEFEAEE-LNDTEVATEIELEE 406 >gi|333029428|ref|ZP_08457489.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011] gi|332740025|gb|EGJ70507.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011] Length = 420 Score = 390 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 131/420 (31%), Positives = 233/420 (55%), Gaps = 9/420 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + + L+ K ID+ ++SV+ +S + + GT + V +NP+ GD ++R Sbjct: 6 DNISLIDTFSDFKENKKIDKTTMISVLEESFRSVIAKIVGTDENYDVIVNPDQGDFEIWR 65 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + V + QISL AR D S +IG V+D + FGR A+ + +Q + K+ Sbjct: 66 NREVVADGDVTDENMQISLTEARKTDESYEIGEEVTDKVHFESFGRRAILNLRQTLASKI 125 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDR 181 E E+D Y ++ ++VG I+S V ++ ++ VD ++ ++ + E I R+ R G+ Sbjct: 126 LELEKDSLYNKYIERVGMIVSAEVYQIWKKEILLVDDEGNELILPKSEQIPRDFFRKGES 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + V + P+++LSRT P F+ +LF +EVPEI +G++ +K V+R PG RAK+AV Sbjct: 186 VRAVVARVDNKNNNPKIILSRTSPLFLERLFELEVPEINDGLITIKKVARIPGERAKVAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ +L PA ++ + L Sbjct: 246 ESYDDRIDPVGACVGVKGSRIHGIVRELCNENIDVINYTSNIQLFIQRSLSPATISSIRL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ + E+ + +++SLAIG+ G N++LAS LT +TID+ E +++ + Sbjct: 306 NEEEHKAEIFLQPDEVSLAIGKGGLNIKLASMLTEYTIDVFRELDETEGE----DIYLDE 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++ + + G + + V + + +EET E+ + E + Sbjct: 362 FSD--EIEGWVIDAIKGLGLTTAKAVLEVPRNRLIEDADLEEETVDEVLSILKSEFEEDE 419 >gi|322412488|gb|EFY03396.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 385 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 210/363 (57%), Gaps = 15/363 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y Sbjct: 122 MREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 302 APAEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRL 361 Query: 351 RQK 353 + Sbjct: 362 EAE 364 >gi|253581490|ref|ZP_04858715.1| transcription elongation factor NusA [Fusobacterium varium ATCC 27725] gi|251836560|gb|EES65095.1| transcription elongation factor NusA [Fusobacterium varium ATCC 27725] Length = 361 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 137/347 (39%), Positives = 214/347 (61%), Gaps = 3/347 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+ Sbjct: 1 MKSKDAKVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 L+ + VVE ++ + +ISL A++ +G +V + +F R A+Q+ KQ++ Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER Y FK+K +II+G ++R+ E N+ V+ + ++ E + R Sbjct: 121 IQKVREAERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+SSD +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V Sbjct: 241 KVAVYSSDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTE 347 >gi|257468347|ref|ZP_05632441.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] gi|317062620|ref|ZP_07927105.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] gi|313688296|gb|EFS25131.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] Length = 361 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 136/356 (38%), Positives = 216/356 (60%), Gaps = 3/356 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+ Sbjct: 1 MKSKDAKVFLEALDELEREKGISKENLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 L+ + VVE ++ + +ISL A++ + +G +V + +F R A+Q+ KQ++ Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRVKVGDIVRIEINCEEFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER Y FK K +II+G ++R+ E N+ V+ + ++ E + R Sbjct: 121 IQKVREAERQYIYDRFKGKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+D +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V Sbjct: 241 KVAVYSADPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE + + Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKEDSLE 356 >gi|294675008|ref|YP_003575624.1| transcription termination factor NusA [Prevotella ruminicola 23] gi|294472210|gb|ADE81599.1| transcription termination factor NusA [Prevotella ruminicola 23] Length = 408 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 133/413 (32%), Positives = 228/413 (55%), Gaps = 8/413 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD + R V Sbjct: 1 MIETFQEFKETKNIDRTTLVSVLEESFRNVIAKIFGSDENFDVIVNPDKGDFEIHRNRVV 60 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EV + +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 61 VPDGEVMDENKEIELSEAQKIEPDYEVGEEVSEEVQFAKFGRRAILNLRQTLASKILELE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KDKV +++SG V ++ V+ +D ++ + + E I +N G+ V++ Sbjct: 121 HDSLYQKYKDKVHQVVSGEVYQIWKREVLLIDDEGNELHLPKQEQIPGDNYHKGETVRAV 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ E P+++LSRT P F+ +L EVPEI +G++ +K V+R PG RAK+AV S D Sbjct: 181 VKEVQNENNNPRIILSRTSPVFLERLLEAEVPEIQDGLITIKRVARIPGDRAKVAVESYD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ +S ++ F+ AL PA ++ + LD++ Sbjct: 241 DRIDPVGACVGVKGSRVHGIVRELCNENIDVINYSANTQLFIQRALSPAKISSINLDQEN 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ + D + F Sbjct: 301 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFRVLNEGE---ADEDIYLDEFSD- 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D+ + + A G + + + +EET ++ R E Sbjct: 357 -EIDQWVIDAIKAIGLDTAKAVLNAPREMLIEKADLEEETVDQLLDVLRAEFE 408 >gi|15618236|ref|NP_224521.1| transcription elongation factor NusA [Chlamydophila pneumoniae CWL029] gi|15835851|ref|NP_300375.1| transcription elongation factor NusA [Chlamydophila pneumoniae J138] gi|16752722|ref|NP_444989.1| transcription elongation factor NusA [Chlamydophila pneumoniae AR39] gi|33241661|ref|NP_876602.1| transcription elongation factor NusA [Chlamydophila pneumoniae TW-183] gi|4376593|gb|AAD18465.1| N Utilization Protein A [Chlamydophila pneumoniae CWL029] gi|7189363|gb|AAF38280.1| N utilization substance protein A [Chlamydophila pneumoniae AR39] gi|8978690|dbj|BAA98526.1| N utilization protein A [Chlamydophila pneumoniae J138] gi|33236170|gb|AAP98259.1| transcription termination-antitermination factor [Chlamydophila pneumoniae TW-183] Length = 434 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 143/430 (33%), Positives = 231/430 (53%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F Sbjct: 2 NKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V E +SG VKR G N+I+DLG + ++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNETLSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV S Sbjct: 182 LLYEVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI-------NRQKDFN 356 D I ++V + IG+RG N RL S + + +++ E + + + Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISHILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + +++ L G+ + + +++AS+ G E A +I + +Y Sbjct: 362 PHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 E + Sbjct: 422 GESKVDEKPE 431 >gi|116515364|ref|YP_815985.1| transcription elongation factor NusA [Streptococcus pneumoniae D39] gi|116075940|gb|ABJ53660.1| transcription termination factor NusA [Streptococcus pneumoniae D39] Length = 378 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 217/380 (57%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + ++ V+E Sbjct: 362 ---EDAASVELEVENDTVEE 378 >gi|163839410|ref|YP_001623815.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] gi|162952886|gb|ABY22401.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] Length = 330 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 126/338 (37%), Positives = 194/338 (57%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I + ++ + ++ A R G R EI+ ++G ++++ Sbjct: 5 MSALRLLEREREIPLEKLIPTIEQALLVAYRKSPGAFEQARAEIDRKSGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D G D P FGR+A +A+Q+I+Q++R+ E + Sbjct: 59 --------------ATEIDDDGAPVGEFED--TPAGFGRIAASTARQIILQRLRDVEDEN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF+ K GE++SG +++ N V V+LG +GV+ E E G R+++++ D Sbjct: 103 VLGEFRGKEGELVSGQIQQGHNPNMVQVNLGTVEGVLPPTEQSPGERYPHGSRIRAFVVD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R Q+GP + LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV + I Sbjct: 163 VHRGQKGPSITLSRSHPGLVRKLFELEVPEIADKSVEIVALAREAGHRTKIAVKAHRPGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ ++L P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASSLSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+ GQN RLA++LTGW IDII++ Sbjct: 283 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIISDA 320 >gi|103423295|emb|CAI98136.1| Transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 402 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 139/374 (37%), Positives = 221/374 (59%), Gaps = 8/374 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L V Sbjct: 1 MLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKTV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 61 VDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAENA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 121 HIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLVT 180 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D + Sbjct: 181 KVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDPN 240 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++D Sbjct: 241 IDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDDE 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 301 RKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAE-- 358 Query: 366 INVDEIIAHLLVAE 379 D+ + V E Sbjct: 359 ---DQDLQQAAVEE 369 >gi|324992028|gb|EGC23950.1| N utilization substance protein A [Streptococcus sanguinis SK405] Length = 420 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 137/418 (32%), Positives = 226/418 (54%), Gaps = 28/418 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + Sbjct: 4 SKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTV 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++ + P +FGRVA QSAKQ I++K+R+ Sbjct: 64 REVVDEVFDSRLEISLKDALAISSAYELRDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 124 TRAITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 184 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 244 PNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAI 303 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 APAEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEM 363 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + F Q +EI+A V E V +E + EET +E Sbjct: 364 ---EAANELGGFAQ--EAEEILADAAVLE--------TEVSAAEATDFDAAAEETVLE 408 >gi|325962805|ref|YP_004240711.1| transcription termination factor NusA [Arthrobacter phenanthrenivorans Sphe3] gi|323468892|gb|ADX72577.1| transcription termination factor NusA [Arthrobacter phenanthrenivorans Sphe3] Length = 326 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 120/338 (35%), Positives = 198/338 (58%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ + Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+++ I P FGR+A +A+Q+I+Q++R+ E D Sbjct: 61 -EIDDDGAPIG-----------------EFEHTPEGFGRIAASTARQIILQRLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFK + GE++SGT+++ ++I V+LG+ + ++ E + E G+R+++ + D Sbjct: 103 VLGEFKGREGELVSGTIQQGNNPHMIQVNLGSVEALLPPPEQVPGEKYIHGNRLRALVID 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP V LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ I Sbjct: 163 VHRGSKGPSVTLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANVPGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S + ATF+ +AL P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSENPATFIASALSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDA 320 >gi|257063653|ref|YP_003143325.1| transcription termination factor NusA [Slackia heliotrinireducens DSM 20476] gi|256791306|gb|ACV21976.1| transcription termination factor NusA [Slackia heliotrinireducens DSM 20476] Length = 401 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 142/367 (38%), Positives = 212/367 (57%), Gaps = 37/367 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ A+A+EK ID ++ + S+ K+ +S+ D RV I+ TG I ++ L+ Sbjct: 4 ELMDALQALAHEKKIDEIYLIERLEASLAKSYQSILNLEWDARVTIDRTTGQIYVYELV- 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 T ++ D + P + R+A Q+AK VI VREA R Sbjct: 63 -------PTGEM--------DEDGYWTEFEERDVTPSNVSRIAAQNAKSVIASIVREAGR 107 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 Y EF+D+VG+I++GTV + IV + + + R+E + E Sbjct: 108 QSIYDEFRDRVGDIVTGTVLQGTPDFTIVKIRDGVEAELPHYDEKRNPGERNEVPAGERY 167 Query: 177 RPGDRVKSYIYDVRR----EQRG------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R R+K+ I DVR E RG P +++SRTHP + +LF +EVPEIY+G+V++ Sbjct: 168 RHNQRIKTLIIDVRDPNSVENRGRGDQARPAIVVSRTHPDLIRRLFELEVPEIYDGMVEI 227 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG+R+K+AV S + ++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A + Sbjct: 228 KSIAREPGARSKVAVASREPNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSEDPAKY 287 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V NAL PA VT+V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 288 VANALSPARVTRVSVDEENQYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSTSF 347 Query: 347 DSINRQK 353 + Sbjct: 348 AGQPAPE 354 >gi|21905243|gb|AAM80105.1| putative transcription termination-antitermination factor [Streptococcus pyogenes MGAS315] Length = 381 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 209/360 (58%), Gaps = 15/360 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + EV Sbjct: 1 MLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ Sbjct: 61 VEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 121 VMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ V+++ +E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAPA 300 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEAE 360 >gi|325280551|ref|YP_004253093.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324312360|gb|ADY32913.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 412 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 140/418 (33%), Positives = 235/418 (56%), Gaps = 12/418 (2%) Query: 7 LELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + D+ A E K+IDR ++ V+ D + YGT + + IN + GD+ ++ Sbjct: 1 MENINLIDSFAEFKEFKNIDRATLMRVLEDIFRNMLLKRYGTDENFDIIINIDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ +EN +I+L A+ D ++G V+D + DFGR +V + +Q + + Sbjct: 61 RNRTVVEDDKLENPNSEITLTEAKKIDEDYELGEEVTDEVKFKDFGRRSVLALRQNLSAR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E E+D Y ++KDKVG+II G V +V ++V D ++ ++ + E I + + GD Sbjct: 121 ILELEKDNVYNKYKDKVGQIILGEVYQVWKKEMLVLDDEGNELILPKQEQIPTDFFKKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V P ++LSRT P F+ +LF EVPEI++G++ +K V R PG RAK+A Sbjct: 181 SIKAVVIRVEMRNSNPYIILSRTSPVFLERLFENEVPEIFDGLITIKNVVRVPGERAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + ++ AL PA + + Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTNNLQLYITRALNPAKIKNIE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE + V + E++SLAIG+ G N++LASQLTG+ ID+ E + + ++ + Sbjct: 301 IDEAHKKANVYLDPEEVSLAIGKGGLNIKLASQLTGYDIDVYRELDQA----QEEDVNLD 356 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F ++ + L G + + + SE+ S + ET E+ + E Sbjct: 357 EFAD--EIEGWVIDELKRVGCDTAKSVLELSESELESRTDLEIETIREVLNILKAEFE 412 >gi|312880100|ref|ZP_07739900.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260] gi|310783391|gb|EFQ23789.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260] Length = 375 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 130/351 (37%), Positives = 225/351 (64%), Gaps = 3/351 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + EK + +++ S + ++ A + G + V ++ E G+ISL + + Sbjct: 6 DFVRALRQIESEKGLSEEIIASSLEAALVSAYKKFKGGNQTVEVFLDFENGEISLCEVRQ 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV E+EN +++L A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVGEIENPDQEVTLDEAHAMGFADVESGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSY 185 R + EF D++G++++G++ + E ++V + ++ ++ R+E I E PGDR+K + Sbjct: 126 RQVIFEEFADRIGDLVTGSIFKTEGDQILVRVNERTEAILPREERIVGEAYHPGDRLKFF 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + +L +E+PEI G ++++ + R+ G+RAK+AV S D Sbjct: 186 LLDVRQTTRGPRIVVSRTHPGLLRRLLELEIPEIQEGTIEIRNIVREAGARAKVAVASLD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 +++DPVGACVG RG+R++++ EL E+ID++VWS D +V NAL PA + K+ + E Sbjct: 246 TNVDPVGACVGSRGTRIKSISGELGGERIDVIVWSSDPLAYVRNALSPAKIAKIEPILEQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + V V +QLSL+IG+ GQNVRLA++LTGW IDI E + + KD Sbjct: 306 EKALRVFVRPDQLSLSIGKAGQNVRLAARLTGWKIDIKVLEPERLPTLKDL 356 >gi|254821852|ref|ZP_05226853.1| transcription elongation factor NusA [Mycobacterium intracellulare ATCC 13950] Length = 348 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEDDNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI + V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADESVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V + Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDPSARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327 >gi|284036133|ref|YP_003386063.1| NusA antitermination factor [Spirosoma linguale DSM 74] gi|283815426|gb|ADB37264.1| NusA antitermination factor [Spirosoma linguale DSM 74] Length = 414 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 137/415 (33%), Positives = 239/415 (57%), Gaps = 11/415 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K+IDR +++++ D + R YGT + V IN E+GD+ ++R E+ Sbjct: 6 LIESFADFARSKNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREI 65 Query: 69 V----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V E++ +Y I L AR ++G V++ + DFGR VQ+A+Q +IQK+++ Sbjct: 66 VDDNSEDIWDYDK-IPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKD 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVK 183 E++ Y ++KD+VG++++ V ++ +I VD +++ + R E IS++ R G+ VK Sbjct: 125 MEKELLYQKYKDQVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVK 184 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I V P+++LSRT P F+ +LF +EVPEIY+G++ ++ + R+PG RAK+AV S Sbjct: 185 AVISRVDMLNGTPKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVES 244 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + + AL PA ++ + +D Sbjct: 245 YDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDR 304 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + R+ V + +Q+SLAIG+ GQN++LA +L ID+ + E ++ +E Sbjct: 305 ETKRVSVFLKPDQVSLAIGKGGQNIKLAGRLVDMEIDVFRDNE-----GQEDDEDVDLME 359 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + +DE + L G + + + E+ +E+T EI ++ E Sbjct: 360 FSDEIDEWMIQELRKVGLDTAKSVLALNKEELVRRTDLEEDTVEEILNILKQEFE 414 >gi|317133695|ref|YP_004093009.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315471674|gb|ADU28278.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 370 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 135/342 (39%), Positives = 202/342 (59%), Gaps = 2/342 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +A+ EK I + +A++I A + Y T + VE++P+ + Sbjct: 2 NAEFFDALEALEKEKGIPEGHLAEKIANAITIAVKHNYKTGDNTIVELDPQKRIFRVALR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E VEN +I L A+ DP + IG V L FGR+A Q+AK VI Q +RE Sbjct: 62 KTVSETVENPQMEIYLDEAKAIDPRVTIGDTVDIELDTRKFGRIAAQTAKHVIRQGIREV 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ER+ E + E+++ + R++ G+ +D+G ++ V+ +E I E LR G VK Sbjct: 122 EREIIKDESMSRQHEMVTAGISRIDSVTGSAYLDIGRAEAVMPANEQIPGEQLREGQMVK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ ++G + L+SRTHP + +LF +EVPEIY+G V++ ++R+PGSR K+AV S Sbjct: 182 VYVVEVKNGEKGVRTLVSRTHPGMIRRLFELEVPEIYDGTVEIMGIAREPGSRTKVAVAS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +D +G+C+G +G RV +V EL EKID++ ++ D ++ AL PA V +V DE Sbjct: 242 KNEDVDAIGSCIGPKGGRVGNIVEELHGEKIDLIPYAQDIGQYIAAALAPAAVVEVTTDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 R VIVP +QLSLAIG RGQNVRLA++LTGW IDI E Sbjct: 302 KERRARVIVPDDQLSLAIGNRGQNVRLAAKLTGWRIDIRPES 343 >gi|319939747|ref|ZP_08014104.1| transcription termination factor NusA [Streptococcus anginosus 1_2_62CV] gi|319811085|gb|EFW07396.1| transcription termination factor NusA [Streptococcus anginosus 1_2_62CV] Length = 397 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ + Sbjct: 122 TRAITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 +ID +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNIDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ D +D V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDSQDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQ 352 + Sbjct: 362 EE 363 >gi|116669975|ref|YP_830908.1| NusA antitermination factor [Arthrobacter sp. FB24] gi|116610084|gb|ABK02808.1| NusA antitermination factor [Arthrobacter sp. FB24] Length = 326 Score = 388 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 121/338 (35%), Positives = 198/338 (58%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D G D P FGR+A +A+Q+I+Q++R+AE D Sbjct: 59 --------------ATEIDDDGAPIGEFED--TPAGFGRIAASTARQIILQRLRDAEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK + GE+++GT+++ ++I V+LG + ++ E + E G+R+++++ D Sbjct: 103 VLGQFKGREGELVAGTIQQGNNPHMIQVNLGTVEALLPPPEQVPGEKYIHGNRLRAFVID 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP + LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ I Sbjct: 163 VHRGTKGPSITLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANIPGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ +AL P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASALSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDA 320 >gi|295132451|ref|YP_003583127.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87] gi|294980466|gb|ADF50931.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87] Length = 410 Score = 388 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 137/417 (32%), Positives = 230/417 (55%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +K IDR +++++ D + A + YG + + +NP+ GD+ ++R Sbjct: 3 NLALIDSFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISL AR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 63 RVVVADGEVEDPNQEISLAEARKIEPDFEVGEDVSEEVKLKDLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + +I +D ++ V+ +D I + R G+ V Sbjct: 123 EHDNTNIYKQFKDLEGEIYTAEVHHIRHRAIILLDDEGNEIVLPKDRQIPSDFFRKGENV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P ++LSRT P F+ KLF E+PE+++G++ +K V R PG +AK+AV Sbjct: 183 RGVIESVELKGNKPSIILSRTAPAFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T + +D Sbjct: 243 SYDDRIDPVGACVGMKGSRIHSIVRELGNENIDVINYTNNDQLFITRALSPAKITSIKID 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R EV++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 EENKRAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELSEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + ++++ +EET E+ RE E Sbjct: 358 ----EIEDWVIKEFAKIGLDTAKSILEQDVNDLIKRTDLEEETVREVLKVLREEFEE 410 >gi|32473747|ref|NP_866741.1| transcription elongation factor NusA [Rhodopirellula baltica SH 1] gi|32444283|emb|CAD74281.1| N utilization substance protein A [Rhodopirellula baltica SH 1] Length = 498 Score = 388 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 152/407 (37%), Positives = 232/407 (57%), Gaps = 37/407 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I Sbjct: 2 NPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAI---- 57 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + +PL GR+ Q+AKQVIIQKVRE Sbjct: 58 ----------------------------AATLAGEPLGDDQIGRIGAQTAKQVIIQKVRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV++ Sbjct: 90 AERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVRA 149 Query: 185 YIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV S Sbjct: 150 IVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVSS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L + Sbjct: 210 EDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLCD 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E F Sbjct: 270 MIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEE----QIERAVGGFS 325 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 Q + E IA LV +G+ ++L+ ++ + G E I Sbjct: 326 QIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRIV 372 >gi|220912195|ref|YP_002487504.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6] gi|219859073|gb|ACL39415.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6] Length = 326 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 122/338 (36%), Positives = 198/338 (58%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ + Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 + D G D P FGR+A +A+Q+I+Q++R+ E D Sbjct: 61 ----------------EIDDDGAPIGEFED--TPAGFGRIAASTARQIILQRLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFK + GE++SGT+++ ++I V+LG+ + ++ E + E G+R+++ + D Sbjct: 103 VLGEFKGREGELVSGTIQQGNNPHMIQVNLGSLEALLPPPEQVPGEKYIHGNRLRALVID 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP V LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ S I Sbjct: 163 VHRGTKGPSVTLSRSHPGLVRKLFELEVPEIADHSVEIVALAREAGHRTKIAVKANASGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S + ATF+ +AL P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSENPATFIASALSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDA 320 >gi|327542469|gb|EGF28948.1| transcription elongation factor NusA [Rhodopirellula baltica WH47] Length = 498 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 152/407 (37%), Positives = 232/407 (57%), Gaps = 37/407 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I Sbjct: 2 NPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAI---- 57 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + +PL GR+ Q+AKQVIIQKVRE Sbjct: 58 ----------------------------AATLAGEPLGDDQIGRIGAQTAKQVIIQKVRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV++ Sbjct: 90 AERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVRA 149 Query: 185 YIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV S Sbjct: 150 IVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVSS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L + Sbjct: 210 EDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLCD 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E F Sbjct: 270 MIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEE----QIERAVGGFS 325 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 Q + E IA LV +G+ ++L+ ++ + G E I Sbjct: 326 QIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRIV 372 >gi|262066535|ref|ZP_06026147.1| transcription termination factor NusA [Fusobacterium periodonticum ATCC 33693] gi|291379769|gb|EFE87287.1| transcription termination factor NusA [Fusobacterium periodonticum ATCC 33693] Length = 353 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 127/354 (35%), Positives = 219/354 (61%), Gaps = 4/354 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + VV+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y +FK++ +I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIYEKFKERENDIVTGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ Sbjct: 241 KVAVYSQVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ + Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEEDDE 353 >gi|169630217|ref|YP_001703866.1| transcription elongation factor NusA [Mycobacterium abscessus ATCC 19977] gi|169242184|emb|CAM63212.1| Transcription elongation protein NusA [Mycobacterium abscessus] Length = 331 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 133/344 (38%), Positives = 194/344 (56%), Gaps = 31/344 (9%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + +A +K I D + ++ ++ A R G + R+EI+ +TG + + Sbjct: 7 AVNLMAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVM-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 AR+ D ++ + P FGR+A +A+QV Q VR+AE + ++ Sbjct: 59 ------------ARETDQDGNL--ITEWDATPEGFGRIAATTARQVFQQGVRDAENEHKF 104 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDRVK 183 EF + GEI+ G ++R N V+V +G S+GVI E + E GDR++ Sbjct: 105 GEFSTREGEIVGGVIQRDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRLR 164 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 165 CYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVAS 224 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 S ++ GAC+G G RV+ V++EL EKIDI+ + PD A FV NAL PA V V V+D Sbjct: 225 KVSGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVID 284 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 E VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 285 EAGKAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAD 328 >gi|257791560|ref|YP_003182166.1| NusA antitermination factor [Eggerthella lenta DSM 2243] gi|317490693|ref|ZP_07949159.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA] gi|325833259|ref|ZP_08165765.1| transcription termination factor NusA [Eggerthella sp. HGA1] gi|257475457|gb|ACV55777.1| NusA antitermination factor [Eggerthella lenta DSM 2243] gi|316910224|gb|EFV31867.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA] gi|325485641|gb|EGC88109.1| transcription termination factor NusA [Eggerthella sp. HGA1] Length = 405 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 139/359 (38%), Positives = 213/359 (59%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+A+E+ ID ++ + S+ K+ + + D RV I+ +TG I ++ L+ Sbjct: 5 ELIEALQALAHERKIDEFYLIERLEASLAKSYQHILDLEWDARVTIDRQTGHIYVYELVP 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E E + + + P D R+A Q+AK VI VREA R Sbjct: 65 VGEPDEE---------------TGEYSEFEERDVTPDDVSRIAAQNAKGVIASIVREAGR 109 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 Y EF D+VG++++GTV + I+ + + + R+E S E+ Sbjct: 110 QSIYEEFSDRVGDLVTGTVLQGTPDFTIIKIRDGVEAELPHYDVKRNPNERNERPSNEHY 169 Query: 177 RPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R R+K I +VR EQ P +++SRTHP + +LF +EVPEIY+G+V++ Sbjct: 170 RHNQRLKVLIIEVRDPNSDAPKMRGEQARPAIVVSRTHPDLIRRLFEIEVPEIYDGMVEI 229 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG+R+K+AV S ++++DPVGACVG +GSRV+ VV ELR+E++D++ W+ D A + Sbjct: 230 KSIAREPGARSKIAVASREANLDPVGACVGPKGSRVRMVVEELRNERVDVIQWAEDPAVY 289 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA VT+VV+DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 290 VANALSPAKVTRVVIDEDNHYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSAS 348 >gi|15902522|ref|NP_358072.1| transcription elongation factor NusA [Streptococcus pneumoniae R6] gi|15458048|gb|AAK99282.1| Transcription termination [Streptococcus pneumoniae R6] Length = 378 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 216/380 (56%), Gaps = 18/380 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + Sbjct: 2 SKEMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+E + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ Sbjct: 62 REVVDEAFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y Sbjct: 122 TRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + Sbjct: 182 VYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELR--------------DEKIDIVVWSPDSATFVINAL 291 ++D +G VG G+ ++ + ++ +E ID++ W D A F+ NA+ Sbjct: 242 PNVDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAI 301 Query: 292 RPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 PA V +V+ DE R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 302 APAEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM 361 Query: 351 RQKDFNERTQFFMQAINVDE 370 + + ++ V+E Sbjct: 362 ---EDAASVELEVENDTVEE 378 >gi|327403853|ref|YP_004344691.1| NusA antitermination factor [Fluviicola taffensis DSM 16823] gi|327319361|gb|AEA43853.1| NusA antitermination factor [Fluviicola taffensis DSM 16823] Length = 411 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 138/417 (33%), Positives = 234/417 (56%), Gaps = 10/417 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ KSID+ + V+ D + + + T I V +N + GD+ +F Sbjct: 2 NSLELVESFSEFKELKSIDKQTMQHVLEDVFRAMLKKKFNTDEHIDVIVNIDKGDVQIFV 61 Query: 65 LLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 E+V EVE+ +I+ A +P +IG VS+ DFGR + S +Q +I ++ Sbjct: 62 NKEIVADGEVEDQNTEIAYSDAIKIEPDFEIGEEVSEEFRFNDFGRRNILSLRQNLISRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E E+D Y ++K+++GEII+G V +V ++V D N++ ++ + E I + + G+ Sbjct: 122 LELEKDHLYKKYKERIGEIITGEVYQVWKKEIMVLDDENNELILPKSEQIPSDYFKKGES 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V P ++LSR P+F+ +LF +EVPE+++G++ +K + R+PG RAK+AV Sbjct: 182 IRAVVSKVDMRNSSPVIILSRIAPEFLERLFELEVPEVFDGLITIKRIVREPGERAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + F+ AL PA +T + + Sbjct: 242 ESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINFTSNPKLFIQRALSPAKITNIEI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ R V + +Q+SLAIG+ G N+RLA +LTG+ ID+ + E + + Sbjct: 302 DEEQKRASVFLKPDQVSLAIGKGGYNIRLAGKLTGFEIDVFRDGESDNE-----DVDLEE 356 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +D I L A G + + + ++++ +EET E+ R E Sbjct: 357 FAD--EIDSWILDELKAVGCDTAKSVLELTVADLVQRTDLEEETVQEVLRILRSEFE 411 >gi|260654723|ref|ZP_05860211.1| transcription termination factor NusA [Jonquetella anthropi E3_33 E1] gi|260630438|gb|EEX48632.1| transcription termination factor NusA [Jonquetella anthropi E3_33 E1] Length = 358 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 223/352 (63%), Gaps = 5/352 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+ ++ ++A E ++ DV+++ + ++ A R ++ V +N ETG++ ++ + Sbjct: 5 LDCIRALKSLAEESNLSEDVIVASLEAALGAAYRKYREGTTEPEVHLNRETGEVEIYDVR 64 Query: 67 EVVEEVENYTCQISLKVA-RDRDPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123 E T +I+ A + + G +V P+ P FGR+A Q+A+QVIIQ+++ Sbjct: 65 RTTENPVAGTSEITQAEAAQMGYSDVQPGDLVRVPVYVHPEKFGRIAAQTARQVIIQRLK 124 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +AER+ + EF +K+G+++ G V R E V++ +G S+ +++R+E I E G R+ Sbjct: 125 DAEREVVFNEFSEKIGDLVLGEVIRSENDQVLIHIGERSEALLQREERIPNEKYDIGMRL 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + ++ DVR+ RGP+++LSRTHP + +L +E+PEI +G V++K + R+ G+RAK+AV Sbjct: 185 RFFLLDVRQTTRGPRIVLSRTHPGLLRRLMELEIPEIADGTVEIKGIVREAGARAKVAVA 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D S+DP+GACVG G+R++++ +EL +EKIDIV+W D T+V N+L PA K+ L Sbjct: 245 TTDPSVDPLGACVGASGARIRSISSELCEEKIDIVLWDEDPLTYVKNSLSPATPVKIELV 304 Query: 303 ED-VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 D + V V +QLSLAIG+ GQNVRLA++LTGW +DI + E+ + Sbjct: 305 PDAERSVRVFVKPDQLSLAIGKTGQNVRLAARLTGWKLDIQSSEKLDEPAGQ 356 >gi|294783786|ref|ZP_06749110.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA] gi|294480664|gb|EFG28441.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA] Length = 353 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 220/354 (62%), Gaps = 4/354 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + VV+ ++ + +ISL+ A++ + IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRVKIGDVLKFEVSCDNFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ Sbjct: 241 KVAVYSQVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ + Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEEDDE 353 >gi|15827820|ref|NP_302083.1| transcription elongation factor NusA [Mycobacterium leprae TN] gi|221230297|ref|YP_002503713.1| transcription elongation factor NusA [Mycobacterium leprae Br4923] gi|20139308|sp|Q9Z5J1|NUSA_MYCLE RecName: Full=Transcription elongation protein nusA gi|4455676|emb|CAB36568.1| putative transcriptional termination/antitermination factor [Mycobacterium leprae] gi|13093372|emb|CAC30509.1| probable transcription termination/antitermination factor [Mycobacterium leprae] gi|219933404|emb|CAR71653.1| probable transcription termination/antitermination factor [Mycobacterium leprae Br4923] Length = 347 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 196/345 (56%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G D R++I+ +TG + + Sbjct: 5 MAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IAREVDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327 >gi|312194982|ref|YP_004015043.1| transcription termination factor NusA [Frankia sp. EuI1c] gi|311226318|gb|ADP79173.1| transcription termination factor NusA [Frankia sp. EuI1c] Length = 391 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 133/349 (38%), Positives = 196/349 (56%), Gaps = 38/349 (10%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMS-----DIRVEINPETGDISL 62 + E + + ++ + ++ KA + G D RV ++ ++G++++ Sbjct: 8 LRGIEREYDLSFETLVEAIETALLKAYQHTRVQQDAGDEEEPRVADARVVVDRKSGEVTV 67 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 A++ P G P DFGR+A +AKQVI+Q++ Sbjct: 68 L--------------------AQEIQPD---GSAREWDDTPADFGRIAQATAKQVIMQRL 104 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRP 178 REA+++ Y ++ D+ EI+SG V+ E V+VDLG +GV+ E + E L Sbjct: 105 REAKQEVTYGQYADREHEIVSGVVQHHEQRAGSRVVLVDLGTIEGVLPPAEQVPGETLEH 164 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+K Y+ V R G V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K Sbjct: 165 GDRIKCYVVHVARGPHGAAVTLSRTHPELVKGLFRLEVPEVADGTVEIAAIAREAGHRSK 224 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S + ++P GAC+G GSRV+AV+ EL EKIDIV WS D ATFV NAL PA V++ Sbjct: 225 IAVRSKVAGVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGNALSPARVSR 284 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V + D V VP QLSLAIGR GQN RLA++LT W IDI ++ E Sbjct: 285 VEVTDLAGRAARVTVPDYQLSLAIGREGQNARLAARLTSWRIDIHSDTE 333 >gi|297156812|gb|ADI06524.1| transcription elongation factor NusA [Streptomyces bingchenggensis BCW-1] Length = 330 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 21/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRRARVELDRATGHVTVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ + R+ D P FGR+A +AKQVI+Q++R+AE + Sbjct: 61 EDAEDLA---EGEEPREFDD------------TPSGFGRIAAMTAKQVILQRLRDAEEEI 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G++++G V++ + NV+VD+G + ++ E + E+ G R++SY+ Sbjct: 106 TFGEYAGREGDVVTGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDMGARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPAEQ 329 >gi|160902006|ref|YP_001567587.1| transcription elongation factor NusA [Petrotoga mobilis SJ95] gi|160359650|gb|ABX31264.1| NusA antitermination factor [Petrotoga mobilis SJ95] Length = 341 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 212/339 (62%), Gaps = 2/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L LL+ DA+ +K I RD ++ ++A SI+ A + YG ++ +EI+ +++++L Sbjct: 2 NLNLLEALDALERDKGISRDSLVDIIAKSIKSAYKKNYG-AKNVEIEIDKNLTKLNVYQL 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVRE 124 +VVE VEN +ISL+ A+ +P I+IG +V + DF RVA Q+AKQVI+Q ++E Sbjct: 61 WKVVETVENPKEEISLEEAKKINPKIEIGEMVRKKINLKKDFRRVAAQTAKQVILQNLKE 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+ + ++ I + + +V + + +G + + ETI E + G+ VK Sbjct: 121 LEKKNLFDKYVALKNRISTAEIIKVSDEYIDIRIGKLETKLPMKETIPGETFKSGELVKV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +++ +GP++++SRT P+ + +L VPEI GI+++ + R+PG R K+AV SS Sbjct: 181 YIKNIQNTSKGPKIMVSRTVPELITELLSSIVPEIEEGIIKIVKIVREPGIRTKVAVVSS 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +DPVGAC+G +GSR+ ++ EL++EK+DI+ +S D F+ +AL PA V ++L+ED Sbjct: 241 MPGVDPVGACIGEKGSRISELLKELKNEKVDIIEYSEDPKIFIKHALAPAEVKNIILNED 300 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V VP+ QLSLA+G+ GQ RLA+++TGW IDI + Sbjct: 301 EKTAFVYVPENQLSLAVGKGGQTARLAAKITGWKIDIHS 339 >gi|296129355|ref|YP_003636605.1| transcription termination factor NusA [Cellulomonas flavigena DSM 20109] gi|296021170|gb|ADG74406.1| transcription termination factor NusA [Cellulomonas flavigena DSM 20109] Length = 364 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 126/342 (36%), Positives = 197/342 (57%), Gaps = 7/342 (2%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q + E+ I DV++ + ++ A G S RVE++ TG ++++ Sbjct: 5 MQALRLIEREREISLDVLVEAIEQALLSAYHRTPGARSRARVELDRRTGHVTVWARDPAP 64 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E + VA P + P FGR+A +A+QVI+Q++R+AE D+ Sbjct: 65 EAPAPEVAEDGTVVAVAPAPEMP-----EYDDTPEGFGRIATATARQVIVQRLRDAEDDQ 119 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 F+ K GE++ G +++ + V+VD+G + V+ E + E G+R+++++ + Sbjct: 120 VLGTFRSKAGEVLGGVIQQGRDPRTVLVDVGGVEAVLPAHEQVPGERYVHGERLRAFVLE 179 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + + Sbjct: 180 VARGQRGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAMAREAGHRTKMAVRANVAGV 239 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT-KVVLDEDVGR 307 + GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA V V+D Sbjct: 240 NAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVLDVRVVDAAARA 299 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + Sbjct: 300 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAEPAA 341 >gi|237739230|ref|ZP_04569711.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31] gi|229422838|gb|EEO37885.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31] Length = 353 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 219/354 (61%), Gaps = 4/354 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + VV+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ Sbjct: 241 KVAVYSEVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ + Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEDDDE 353 >gi|307331528|ref|ZP_07610641.1| transcription termination factor NusA [Streptomyces violaceusniger Tu 4113] gi|306882845|gb|EFN13918.1| transcription termination factor NusA [Streptomyces violaceusniger Tu 4113] Length = 330 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 199/339 (58%), Gaps = 21/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N +TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTDGSRRRARVELNRDTGHVTVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE + Sbjct: 61 EDAED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEEEI 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G++++G V++ + NV+VD+G + ++ E + E+ G R+++Y+ Sbjct: 106 TFGEYAGREGDVVAGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRTYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 226 NAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPADLVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|311748745|ref|ZP_07722530.1| transcription termination factor NusA [Algoriphagus sp. PR1] gi|126577279|gb|EAZ81527.1| transcription termination factor NusA [Algoriphagus sp. PR1] Length = 414 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 137/405 (33%), Positives = 234/405 (57%), Gaps = 10/405 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K++DR ++ ++ D + R + + V IN + GD+ +FR+ E+ Sbjct: 6 LIESFAEFARSKNVDRPTMIRILEDVFRAMIRKKFENDENFDVTINADKGDLEIFRIREI 65 Query: 69 VEEVENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ ISL AR +P +IG V + + +FGR AVQ A+Q +IQ++++ Sbjct: 66 VDDNSEDIWDFDKISLTEARKIEPDFEIGEEVYEKIELEEFGRRAVQMARQTLIQRIKDL 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKS 184 E+D Y +++++VGEI+S V ++ V++ D ++ ++ + E I ++ R GD VK+ Sbjct: 126 EKDILYNKYEEQVGEIVSAEVYQILGREVLLMDNEGNELILPKGEQIPKDRFRKGDAVKA 185 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V P+++LSRT P F+ +LF EVPE+Y+G++ + + R+PG RAK+AV S Sbjct: 186 IVHRVDMMNGNPKIILSRTSPVFLERLFENEVPEVYDGLITIVKIVREPGERAKVAVESY 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGM+GSR+ AVV EL++E ID++ ++ + +V AL PA V+ + D++ Sbjct: 246 DDRIDPVGACVGMKGSRIHAVVRELQNENIDVINFTDNLDLYVTRALSPAKVSSITADQE 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 RI V + +Q+SLAIG+ G N++LAS+L G+ ID+ E +N ++ + F Sbjct: 306 TKRISVFLKPDQVSLAIGKGGYNIKLASKLVGYEIDVFRE----LNEYEEEDVDLVEFTD 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 +D I L G + + + ++ +EET EI Sbjct: 362 --EIDGWIIEELKKTGLDTAKSVLTLSKEDLLRRTELEEETIDEI 404 >gi|325286756|ref|YP_004262546.1| NusA antitermination factor [Cellulophaga lytica DSM 7489] gi|324322210|gb|ADY29675.1| NusA antitermination factor [Cellulophaga lytica DSM 7489] Length = 410 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 136/416 (32%), Positives = 227/416 (54%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ + + A + +G+ + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKFIDRVTLMAILEEVFRNALKKKFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE EVE +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RIVVEDGEVEEPNEEISLTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + VI VD ++ V+ +D I + R GD V Sbjct: 123 EHDNTTIYKQFKDLEGEIYTAEVHHIRHRAVILVDDEGNEIVMPKDRQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P+F+ +LF E+PE+++G++ +K R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPSIIMSRTSPKFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG++GSR+ +V EL +E ID+V W+ + V AL PA ++ V LD Sbjct: 243 SYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVVNWTSNPQLLVTRALSPAKISSVKLD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ +V + +++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 DEKMTAQVYLKPDEVSRAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D I G + ++A + ET +E+ +E LE Sbjct: 358 ----EIDNWIIEEFKKIGLDTARSVLEQDSEDLAKRTDLEVETILEVVRILKEELE 409 >gi|225848027|ref|YP_002728190.1| transcription termination factor NusA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644454|gb|ACN99504.1| transcription termination factor NusA [Sulfurihydrogenibium azorense Az-Fu1] Length = 370 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 156/364 (42%), Positives = 228/364 (62%), Gaps = 18/364 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRL 65 ++L + + VA EK+I +V+ + D I A + Y +D I+V + + ++ + Sbjct: 3 IKLKNVIETVAKEKNIPEEVIERALKDGIFVAVKKEYKLRNDQIKVIYDKDKDELKVLIK 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V VE+ +ISL+ A+ +P++D G V PL D GR+A+ AK+VI +KV Sbjct: 63 KKVTPFVEDEKKEISLEEAKKYNPNVDYGKFVEVPLDLEDIGRIALSVAKEVIAEKVSRV 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EFK+ G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDRV++ Sbjct: 123 ERDILYKEFKEYEGKIITGTVRRFEGEDIIVDLGRVEAILPKEEQIPKEKYKIGDRVRAL 182 Query: 186 IYDVRREQR-----------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + V +E + GP ++LSRTHP F+ KL +EVPEI G ++VKA Sbjct: 183 VLKVLKENKYPILEKGKVKRVIKVSEGPLIILSRTHPNFLKKLLEIEVPEIQEGEIEVKA 242 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 V+R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL DEKID++ WS D A FVI Sbjct: 243 VAREPGERAKVAVYTKDKNIDPVGVVVGLKGSRIQNVSNELSDEKIDVIEWSEDPARFVI 302 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 AL PA TK L RIEV VPKE+LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 303 RALSPARPTKYRLLPKEKRIEVAVPKEELSLAIGKNGINAKLAHKLTGWHIDILSEEDFE 362 Query: 349 INRQ 352 ++ Sbjct: 363 KIQK 366 >gi|50842972|ref|YP_056199.1| transcription elongation factor NusA [Propionibacterium acnes KPA171202] gi|289426473|ref|ZP_06428216.1| transcription termination factor NusA [Propionibacterium acnes SK187] gi|289428703|ref|ZP_06430386.1| transcription termination factor NusA [Propionibacterium acnes J165] gi|295131043|ref|YP_003581706.1| transcription termination factor NusA [Propionibacterium acnes SK137] gi|50840574|gb|AAT83241.1| transcriptional termination/antitermination factor [Propionibacterium acnes KPA171202] gi|289153201|gb|EFD01919.1| transcription termination factor NusA [Propionibacterium acnes SK187] gi|289158101|gb|EFD06321.1| transcription termination factor NusA [Propionibacterium acnes J165] gi|291377248|gb|ADE01103.1| transcription termination factor NusA [Propionibacterium acnes SK137] gi|313763591|gb|EFS34955.1| transcription termination factor NusA [Propionibacterium acnes HL013PA1] gi|313773529|gb|EFS39495.1| transcription termination factor NusA [Propionibacterium acnes HL074PA1] gi|313793985|gb|EFS42009.1| transcription termination factor NusA [Propionibacterium acnes HL110PA1] gi|313801372|gb|EFS42623.1| transcription termination factor NusA [Propionibacterium acnes HL110PA2] gi|313807949|gb|EFS46430.1| transcription termination factor NusA [Propionibacterium acnes HL087PA2] gi|313811582|gb|EFS49296.1| transcription termination factor NusA [Propionibacterium acnes HL083PA1] gi|313813358|gb|EFS51072.1| transcription termination factor NusA [Propionibacterium acnes HL025PA1] gi|313816771|gb|EFS54485.1| transcription termination factor NusA [Propionibacterium acnes HL059PA1] gi|313819518|gb|EFS57232.1| transcription termination factor NusA [Propionibacterium acnes HL046PA2] gi|313822158|gb|EFS59872.1| transcription termination factor NusA [Propionibacterium acnes HL036PA1] gi|313823608|gb|EFS61322.1| transcription termination factor NusA [Propionibacterium acnes HL036PA2] gi|313825931|gb|EFS63645.1| transcription termination factor NusA [Propionibacterium acnes HL063PA1] gi|313829611|gb|EFS67325.1| transcription termination factor NusA [Propionibacterium acnes HL063PA2] gi|313831322|gb|EFS69036.1| transcription termination factor NusA [Propionibacterium acnes HL007PA1] gi|313834932|gb|EFS72646.1| transcription termination factor NusA [Propionibacterium acnes HL056PA1] gi|313839907|gb|EFS77621.1| transcription termination factor NusA [Propionibacterium acnes HL086PA1] gi|314914745|gb|EFS78576.1| transcription termination factor NusA [Propionibacterium acnes HL005PA4] gi|314919293|gb|EFS83124.1| transcription termination factor NusA [Propionibacterium acnes HL050PA1] gi|314920797|gb|EFS84628.1| transcription termination factor NusA [Propionibacterium acnes HL050PA3] gi|314924649|gb|EFS88480.1| transcription termination factor NusA [Propionibacterium acnes HL036PA3] gi|314930476|gb|EFS94307.1| transcription termination factor NusA [Propionibacterium acnes HL067PA1] gi|314954366|gb|EFS98772.1| transcription termination factor NusA [Propionibacterium acnes HL027PA1] gi|314957448|gb|EFT01551.1| transcription termination factor NusA [Propionibacterium acnes HL002PA1] gi|314962084|gb|EFT06185.1| transcription termination factor NusA [Propionibacterium acnes HL002PA2] gi|314963663|gb|EFT07763.1| transcription termination factor NusA [Propionibacterium acnes HL082PA1] gi|314968509|gb|EFT12607.1| transcription termination factor NusA [Propionibacterium acnes HL037PA1] gi|314974197|gb|EFT18293.1| transcription termination factor NusA [Propionibacterium acnes HL053PA1] gi|314976694|gb|EFT20789.1| transcription termination factor NusA [Propionibacterium acnes HL045PA1] gi|314984332|gb|EFT28424.1| transcription termination factor NusA [Propionibacterium acnes HL005PA1] gi|314986521|gb|EFT30613.1| transcription termination factor NusA [Propionibacterium acnes HL005PA2] gi|314990880|gb|EFT34971.1| transcription termination factor NusA [Propionibacterium acnes HL005PA3] gi|315079513|gb|EFT51506.1| transcription termination factor NusA [Propionibacterium acnes HL053PA2] gi|315081257|gb|EFT53233.1| transcription termination factor NusA [Propionibacterium acnes HL078PA1] gi|315083455|gb|EFT55431.1| transcription termination factor NusA [Propionibacterium acnes HL027PA2] gi|315087141|gb|EFT59117.1| transcription termination factor NusA [Propionibacterium acnes HL002PA3] gi|315095336|gb|EFT67312.1| transcription termination factor NusA [Propionibacterium acnes HL038PA1] gi|315099219|gb|EFT71195.1| transcription termination factor NusA [Propionibacterium acnes HL059PA2] gi|315100430|gb|EFT72406.1| transcription termination factor NusA [Propionibacterium acnes HL046PA1] gi|315106776|gb|EFT78752.1| transcription termination factor NusA [Propionibacterium acnes HL030PA1] gi|315109017|gb|EFT80993.1| transcription termination factor NusA [Propionibacterium acnes HL030PA2] gi|327328401|gb|EGE70163.1| transcription termination factor NusA [Propionibacterium acnes HL096PA2] gi|327329733|gb|EGE71489.1| transcription termination factor NusA [Propionibacterium acnes HL096PA3] gi|327444188|gb|EGE90842.1| transcription termination factor NusA [Propionibacterium acnes HL043PA2] gi|327444933|gb|EGE91587.1| transcription termination factor NusA [Propionibacterium acnes HL043PA1] gi|327446418|gb|EGE93072.1| transcription termination factor NusA [Propionibacterium acnes HL013PA2] gi|327451993|gb|EGE98647.1| transcription termination factor NusA [Propionibacterium acnes HL092PA1] gi|327454970|gb|EGF01625.1| transcription termination factor NusA [Propionibacterium acnes HL087PA3] gi|327457744|gb|EGF04399.1| transcription termination factor NusA [Propionibacterium acnes HL083PA2] gi|328752173|gb|EGF65789.1| transcription termination factor NusA [Propionibacterium acnes HL020PA1] gi|328755195|gb|EGF68811.1| transcription termination factor NusA [Propionibacterium acnes HL087PA1] gi|328758325|gb|EGF71941.1| transcription termination factor NusA [Propionibacterium acnes HL025PA2] gi|328760059|gb|EGF73639.1| transcription termination factor NusA [Propionibacterium acnes HL099PA1] gi|332675923|gb|AEE72739.1| transcription elongation protein NusA [Propionibacterium acnes 266] Length = 323 Score = 385 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 198/338 (58%), Gaps = 25/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYDG--TPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V V+D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 IVP QLSLAIGR GQN RLA++LTGW IDI + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPD 320 >gi|154249422|ref|YP_001410247.1| transcription elongation factor NusA [Fervidobacterium nodosum Rt17-B1] gi|154153358|gb|ABS60590.1| NusA antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 344 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 207/339 (61%), Gaps = 2/339 (0%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LL+ + EK I D + ++ ++ A ++ G ++ + IN +G+I ++ Sbjct: 2 NSPMLLEALRELEREKGISVDESIEILEKALMSAYKNKTG-ERNVEIVINKLSGEIEAYQ 60 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +LEVVE+VEN QISL+ A P IG +V + GR A+Q AKQV+IQK+RE Sbjct: 61 ILEVVEKVENENIQISLEDALKIKPDATIGDIVKRKMNIKRLGRFAIQVAKQVLIQKIRE 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+++QY ++ + VG +++ V +V + + +G + + + E I E D +K Sbjct: 121 IEKEKQYEKYAELVGRVVTAEVLKVTPEWLDIRIGKLETHLPKKEWIPGEEFEQSDLIKV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+++++GP+++++R +F+V L +EVPEI +GI+++ + R+PG R K+AV S Sbjct: 181 YVREVKKDKKGPKIIVTRIDNEFVVGLLKLEVPEIESGIIEIVKIVREPGVRTKIAVISH 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DPVG+C+G GSR+ ++ EL+ EKIDI+ WS D + NAL PA V V + + Sbjct: 241 DPKVDPVGSCIGPEGSRIAPILKELKIEKIDIIKWSNDPKELIANALLPASVIDVEILDY 300 Query: 305 VGRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + V+V QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 301 ESKASRVLVSPNQLSLAIGKAGQNARLAAKLTGWKIDIK 339 >gi|312130305|ref|YP_003997645.1| nusa antitermination factor [Leadbetterella byssophila DSM 17132] gi|311906851|gb|ADQ17292.1| NusA antitermination factor [Leadbetterella byssophila DSM 17132] Length = 414 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 135/416 (32%), Positives = 241/416 (57%), Gaps = 11/416 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L++ A EK+IDR +++++ D ++ R YG + + +NPE+GD+ ++R E Sbjct: 5 DLIESFAEFAREKNIDRPTMIAILEDVLRTMIRKAYGEDHNFDIILNPESGDLEMWRKRE 64 Query: 68 VV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E++ ++ I L A+ +P +IG V++P+ DFGR VQ+A+Q +IQKV+ Sbjct: 65 IVDDNSEDIWDHDK-IPLSEAKKIEPDFEIGEEVAEPVKIEDFGRRIVQTARQTLIQKVK 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 + E++ Y ++KD+VGE+++ V ++ VI +D ++ + + E I ++ + G + Sbjct: 124 DLEKEMLYDQYKDQVGELVTVEVYQILSREVICIDEEGNELSLPKGEQIPKDRFKKGSSI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I+ V P++ LSRT P F+ +LF +E+PEI +GI+ ++ + R+PG RAK+AV Sbjct: 184 RAIIHKVEIHNGNPKLTLSRTSPVFLERLFELEIPEIQDGIISIRKIVREPGERAKVAVE 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ ++V EL +E ID++ W+ + + AL PA ++ V D Sbjct: 244 SFDDRIDPVGACVGMKGSRIHSIVRELENENIDVIQWTDNINLLISRALSPAKISNVRFD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R+ V + +Q+SLAIG+ G N++LAS+L G ID+ + + ++ + F Sbjct: 304 ENAERVSVFLKPDQVSLAIGKGGLNIKLASKLIGLEIDVFRDID---GVVEEEDVDLMEF 360 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++E I G + + V ++ +EET E+ ++ E Sbjct: 361 TD--EIEEWILLEFRKIGLDTAKSVLNVPKEDLVRRTPLEEETIEEVFDILKKEFE 414 >gi|296139427|ref|YP_003646670.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296027561|gb|ADG78331.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 333 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 31/351 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ EK I + V+ + ++ A + G R+++N TG++ + Sbjct: 5 MATLRAIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D +I D P FGR+A SA+Q+I Q++R+AE DR Sbjct: 59 --------------AQELDADGNIITEWDD--TPEGFGRIAADSARQLITQRLRDAENDR 102 Query: 130 QYLEFKDKVGEIISGTVKRVEY----GNVIVDLGNS----DGVIRRDETISRENLRPGDR 181 + EF GE++SG V+ G V+V +G+ +G++ E + EN GDR Sbjct: 103 TFGEFAVYEGEVVSGVVQADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R QRG Q+ LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV Sbjct: 163 MKFYVVGVSRGQRGTQITLSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 +S ++ GAC+G G RV+ V+++L EKIDI+ + D A FV NAL P+ V V + Sbjct: 223 RTSVPGLNAKGACIGPMGQRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 +D V+VP +LSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 283 VDPKEKAARVVVPDFKLSLAIGKEGQNARLAARLTGWRIDIRSDADPAAAE 333 >gi|34540099|ref|NP_904578.1| transcription elongation factor NusA [Porphyromonas gingivalis W83] gi|188994218|ref|YP_001928470.1| transcription elongation factor NusA [Porphyromonas gingivalis ATCC 33277] gi|34396410|gb|AAQ65477.1| N utilization substance protein A, putative [Porphyromonas gingivalis W83] gi|188593898|dbj|BAG32873.1| putative nitrogen utilization substance protein A [Porphyromonas gingivalis ATCC 33277] Length = 444 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 125/410 (30%), Positives = 231/410 (56%), Gaps = 12/410 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + +++A E K+ID++ +++V+ DS + ++G+ + V INPE GD Sbjct: 2 AKKQETISMIESLAEFKELKNIDKETMINVLEDSFRNVLAKIFGSDDNFDVIINPEKGDF 61 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R +VVE+ VE+ + ++SL A + DP ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRTRQVVEDGAVEDESREVSLSDAHEIDPEAEVGEEVTDSVNFASFGRRAILNLRQAL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLR 177 K+ E +++ + F +++G++IS V +V +++D ++ ++ + E I + R Sbjct: 122 SSKIMELQKENLFNTFTERIGQLISAEVYQVWKREALLIDDDGNELLMPKSEQIPSDFFR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V + + V P++++SRT +F+ +LF + VPEI +G++ ++ V+R PG RA Sbjct: 182 KGETVHAVVERVENANNNPKIIVSRTSGEFLKRLFELNVPEIADGLITIRCVARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM GSR++ +V ELR E ID+ ++ ++A F+ AL PA ++ Sbjct: 242 KMAVESYDDRIDPVGACVGMNGSRIRGIVRELRGENIDVTQYTTNTALFIQRALSPARIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L E + EV + E++ LAIG+ N++LAS LTG+ I++ + +D +E Sbjct: 302 SIRLLEAEHKAEVFLRPEEVPLAIGKNASNIKLASGLTGYQIEVFRDIDDMDEEDIYLDE 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 +D+ I L G + + ++ ++ T Sbjct: 362 FND------EIDQWIIDLFKNIGCNTAKSVLSKNREDLIKETDLEDSTID 405 >gi|160913530|ref|ZP_02076221.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991] gi|158434082|gb|EDP12371.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991] Length = 548 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 137/345 (39%), Positives = 219/345 (63%), Gaps = 2/345 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 + + A+ ++ + +++V+ + +++ KA R + +RV ++ E G+I +F+ Sbjct: 5 DFMTAMQAIESDRQLSKEIVVDALQEALSKAFRKHIEIPDALVRVAVDDENGEIKVFQQR 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE VE+ +ISL A+ + ++++G VV + + DFGR AV AK V+ QK+REAE Sbjct: 65 AVVETVEDDELEISLNDAKRINEALELGDVVEEEVNIADFGRAAVILAKNVMKQKIREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y E+ DKV E+I GTV+ VE +V++G + ++ +++ I E R G ++ I Sbjct: 125 KLAVYEEYCDKVEEMIFGTVESVEEKFCVVNIGKTLAIMPKNQQIPNETYREGSMIRVVI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +E +G QVL+SR + +LF EVPEIY GI+++KA++R+ G R K+AV+S + Sbjct: 185 SEVNKETKGAQVLVSRADATLVKRLFEKEVPEIYQGIIEIKAIAREAGERTKMAVYSHNE 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDP+GAC+G RG+RVQ ++ EL+ EKIDI WS D + + NAL PA V V+ +E Sbjct: 245 NIDPIGACIGPRGTRVQVIIDELKGEKIDIFEWSDDVSELIKNALSPAEVLAVIPNEARK 304 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + V+VP QLSLAIG+RG+N RLA +LTG IDI +E + + Sbjct: 305 DGLLVVVPDNQLSLAIGKRGKNARLAVKLTGHKIDIKSESDINEM 349 >gi|225849798|ref|YP_002730032.1| transcription termination factor NusA [Persephonella marina EX-H1] gi|225646384|gb|ACO04570.1| transcription termination factor NusA [Persephonella marina EX-H1] Length = 374 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 148/365 (40%), Positives = 223/365 (61%), Gaps = 19/365 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++L + +AVA EK++ +++ + D I A + YG +++V + E ++ + Sbjct: 3 VKLKNVIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLLKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V VEN ISL+ A+ DP ++G V PL + GR+A+ +AK+VI KV E Sbjct: 63 RVTPFVENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVARVE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ + EFK+ G+I++GTV+R E G++IVDLG + V+ +E I +E R GDR+++ I Sbjct: 123 KNILFKEFKELEGKIVTGTVRRFEDGDIIVDLGRIEAVLPEEEQIKKEKYRVGDRIRALI 182 Query: 187 YDVRREQR-------------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 V ++ P V+LSRTHP F+ KL +EVPEI G +++K Sbjct: 183 LKVIKDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEIEIK 242 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A++R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL EKID++ W PD A F+ Sbjct: 243 AIAREPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPAQFI 302 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + AL P+ K L ED RIEV VPK +LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 303 LRALSPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSEEDF 362 Query: 348 SINRQ 352 +Q Sbjct: 363 ERIQQ 367 >gi|282854640|ref|ZP_06263975.1| transcription termination factor NusA [Propionibacterium acnes J139] gi|282582222|gb|EFB87604.1| transcription termination factor NusA [Propionibacterium acnes J139] gi|314981920|gb|EFT26013.1| transcription termination factor NusA [Propionibacterium acnes HL110PA3] gi|315090735|gb|EFT62711.1| transcription termination factor NusA [Propionibacterium acnes HL110PA4] Length = 323 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 198/338 (58%), Gaps = 25/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYDG--TPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V V+D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSGDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 IVP QLSLAIGR GQN RLA++LTGW IDI + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPD 320 >gi|218509055|ref|ZP_03506933.1| transcription elongation factor NusA [Rhizobium etli Brasil 5] Length = 266 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 201/264 (76%), Positives = 238/264 (90%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAV 265 S+DSSIDPVGACVGMRGSRVQAV Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAV 266 >gi|302542143|ref|ZP_07294485.1| transcription termination factor NusA [Streptomyces hygroscopicus ATCC 53653] gi|302459761|gb|EFL22854.1| transcription termination factor NusA [Streptomyces himastatinicus ATCC 53653] Length = 330 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 123/345 (35%), Positives = 199/345 (57%), Gaps = 23/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV+++ +G ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRRARVQLDRNSGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A++ ++ G P FGR+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AQEDADDLEEGEEPREFDDTPSGFGRIAAMTAKQVILQRLRDAEEE 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + N++VD+G + ++ E + E+ G R+++Y+ Sbjct: 105 ITFGEYAGREGDVVAGVVQQGKDPKNILVDIGRLEAILPSQEQVPGEDYAHGTRLRTYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV V+D Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDLAAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V VP QLSLAIG+ GQN RLA++LTGW IDI + + S ++ Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTDQSADQ 329 >gi|305665253|ref|YP_003861540.1| transcription elongation factor NusA [Maribacter sp. HTCC2170] gi|88710006|gb|EAR02238.1| transcription elongation factor NusA [Maribacter sp. HTCC2170] Length = 410 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 134/416 (32%), Positives = 227/416 (54%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ D + A + +G+ + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKFIDRVTLMAILEDVFRNALKKKFGSDENFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE EVE +ISL A+ +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RIVVEDGEVEEPNEEISLSEAQKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + VI+ D ++ ++ +D I + R GD V Sbjct: 123 EHDNTTIYKQFKDLEGEIYTAEVHHIRHKAVILLDDEGNEIILPKDRQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SR+ P+F+ +LF E+PE+++G++ +K R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPSIIMSRSSPRFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V L+ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLLVTRALSPARVSSVKLN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 DEKMTAQVYLRPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D I G + + ++ +EET E+ +E LE Sbjct: 358 ----EIDAWIIEEFKKIGMDTARSVLEQDVDDLVKRTDLEEETISEVVRILKEELE 409 >gi|314978822|gb|EFT22916.1| transcription termination factor NusA [Propionibacterium acnes HL072PA2] gi|315089313|gb|EFT61289.1| transcription termination factor NusA [Propionibacterium acnes HL072PA1] Length = 323 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 197/338 (58%), Gaps = 25/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYDG--TPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA+ R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALVREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V V+D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 IVP QLSLAIGR GQN RLA++LTGW IDI + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPD 320 >gi|332520007|ref|ZP_08396471.1| transcription termination factor NusA [Lacinutrix algicola 5H-3-7-4] gi|332044566|gb|EGI80760.1| transcription termination factor NusA [Lacinutrix algicola 5H-3-7-4] Length = 410 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 132/416 (31%), Positives = 231/416 (55%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +K IDR +++++ D + A + +G + + INP+ GD+ ++R Sbjct: 3 NLALIDSFSEFKDDKLIDRVTLMAILEDVFRSALKKKFGDDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RIVVADGEVEEPNQEISLTAARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + + +FK+ G++ + V + + VI +D ++ ++ +D+ I + R GD V Sbjct: 123 EHDNTNIFKQFKELEGDLYTAEVHHIRHRAVILLDDEGNEIILPKDKQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+AV Sbjct: 183 RGIIDSVELKGNKPAIIMSRTSPKFLEKLFESEIPEVFDGLITIKNVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA VT + +D Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNLQLYITRALSPARVTSIKID 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R E I+ E++S AIGR G N+RLA QLTG+ ID+ E + ++F++ Sbjct: 303 EENKRAEAILKPEEVSKAIGRGGHNIRLAGQLTGYDIDVFREGAEEDVELREFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +++ I G + + + ++ +EET +++ +E E Sbjct: 358 ----EIEDWIIAEFSKAGLDTAKSILEQDVEDLVKRTDLEEETILDVIRILKEEFE 409 >gi|110639790|ref|YP_680000.1| transcription elongation factor NusA [Cytophaga hutchinsonii ATCC 33406] gi|110282471|gb|ABG60657.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] Length = 418 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 136/418 (32%), Positives = 234/418 (55%), Gaps = 13/418 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A KSIDR ++ ++ D + R YGT + V IN + GD+ ++ + E+ Sbjct: 6 LIESFAEFAKFKSIDRPTMMKIVEDVFRTMIRKKYGTDDNFNVIINVDKGDLEIWWMREI 65 Query: 69 VEEV-------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V + + ISL A + + G V+ + DFGR VQ+A+Q +IQK Sbjct: 66 VSDDFAEDSFDYDPNKHISLTDAHLIEKDFEEGEEVATEVKLEDFGRRMVQTARQTLIQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 V++ E+D + ++KD VGEII+G + +V +++D ++ + + E I ++ R GD Sbjct: 126 VKDLEKDNLFQKYKDLVGEIINGEIYQVLSKEILLIDADGNELALPKYEQIPKDRFRKGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ ++ V P+++LSRT P+F+ +LF +EVPE+Y+G++ ++ + R+PG RAK+A Sbjct: 186 NVRAIVHRVEMHNGNPKIILSRTSPKFLERLFELEVPEVYDGLISIRNIVREPGERAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA ++ + Sbjct: 246 VESYDDRIDPVGACVGMKGSRIHSIVRELENENIDVINFTDNIDLFIARALSPAKISSLK 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++ D GR V + +Q+SLAIG+ GQN++LAS+L G ID+ E + NE Sbjct: 306 VEADKGRASVYLKPDQVSLAIGKGGQNIKLASKLVGLEIDVFRE-----LTGNEDNEDVD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +++ I L G + + + ++ +EET ++ R+ E Sbjct: 361 LTEFVDEIEDWILEELKRIGLDTAKSVLALSKDDLVRRTELEEETVEDVLQILRQEFE 418 >gi|307297718|ref|ZP_07577524.1| transcription termination factor NusA [Thermotogales bacterium mesG1.Ag.4.2] gi|306916978|gb|EFN47360.1| transcription termination factor NusA [Thermotogales bacterium mesG1.Ag.4.2] Length = 342 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 133/338 (39%), Positives = 209/338 (61%), Gaps = 1/338 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L LL+ D + EK+I+++ V+ ++ ++Q A + + + SD+ V I+ TGDI +F Sbjct: 2 NLNLLEALDQLQDEKNIEKEEVIDILEKALQSAYKKNFASESDVDVRIDRLTGDIEVFEK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L VVE VEN + ++ L+ A D S +IG V L F R+A Q+A+QV+IQK+RE Sbjct: 62 LLVVEAVENPSLEVKLEEALKLDSSAEIGSTVERKLNIKKFKRIAAQTARQVLIQKIREK 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ + ++ D G + + V RV + + +G + I E I E R +K Y Sbjct: 122 EKENLFDKYVDMKGTVTTSEVLRVTDEWIDLRIGKLETRIPTKELIPGEQPRLNSLMKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV + RGP++L++R P F+++L ++VPEI +G V VKA++R+ G R K+AVFS + Sbjct: 182 VVDVTKSVRGPRLLVTRRTPDFVIELLKLQVPEIASGDVTVKAIAREEGIRTKVAVFSQN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 + +DPVGAC+G G+R+ V+ E++ EK+DI+ WS + A FV N++ PA +V + + + Sbjct: 242 TKVDPVGACIGESGTRIAEVLREIKPEKVDILRWSDNPAEFVGNSIAPASALEVKVANIE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V V QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 NHEATVFVSPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|225011158|ref|ZP_03701620.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C] gi|225004720|gb|EEG42680.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C] Length = 410 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/416 (31%), Positives = 230/416 (55%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ + + A + +G+ + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKFIDRVTLMAILEEVFRSALKKKFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ V + +IS+ AR +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RVVVEDIDVMDPNEEISITEARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + +I+ D ++ ++ +D+ I + R GD V Sbjct: 123 EHDNTTIYKQFKDLEGEIYTAEVHHIRHQAIILLDDEGNEIILPKDKQIPADFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P F+ +LF E+PE+++G++ +K R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPSIIMSRTSPLFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V LD Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVKELGNENIDVINWTNNPTLLVTRALSPARVSSVKLD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 DEKMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ I L G + + ++A +EET +++ +E LE Sbjct: 358 ----EIEAWIIAELSKIGLDTARAVLEQDVEDLAKRTDLEEETILDVVRILKEELE 409 >gi|296125433|ref|YP_003632685.1| NusA antitermination factor [Brachyspira murdochii DSM 12563] gi|296017249|gb|ADG70486.1| NusA antitermination factor [Brachyspira murdochii DSM 12563] Length = 498 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 134/450 (29%), Positives = 239/450 (53%), Gaps = 38/450 (8%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 ++ EK I +++ V+A +++ A + YG + + + + + ++++ VVEEV Sbjct: 9 LQQLSDEKDISVELLKEVIASTMELALKKKYGNDINFHIHFDNKN-NPTVYKGANVVEEV 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQY 131 + +ISL+ A+ D I++G V + ++ FGR+ AK QK+ + E++ Y Sbjct: 68 RDKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESMVAKTTFFQKISDLEKNIIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV-- 189 EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YIY V Sbjct: 128 NEFKRRENQLVNGYFQREHKGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYIYKVQG 187 Query: 190 ---RREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 R + ++LL+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+ Sbjct: 188 GKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVAVVSN 247 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 +DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++++ D Sbjct: 248 KPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRIIITDP 307 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ--KDFNERTQF 361 + +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE + N + KD Q Sbjct: 308 EKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIVPLNQI 367 Query: 362 FMQAI--------------------------NVDEIIAHLLVAEGFADVEELACVKISEI 395 F +DE I L+ G +EEL + EI Sbjct: 368 FSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSIEELYNLSAEEI 427 Query: 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 D++T + ++ +E ++ + Sbjct: 428 MEKTNLDKDTVDNLMLVMKDVVEIVESEDE 457 >gi|108804247|ref|YP_644184.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941] gi|108765490|gb|ABG04372.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941] Length = 381 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 131/339 (38%), Positives = 198/339 (58%), Gaps = 30/339 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL + EK I + V V+ +S+ A R G + V ++ ETGD+ + + Sbjct: 5 LLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGDLRVMK---- 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + E+ I+ + DF R+A +Q +Q++ E Sbjct: 61 --DGED----ITPED--------------------FDFTRIAASLMRQNFMQRLNEVHNQ 94 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ +++G++++G V++ I+DLG + ++ E + E G R+K Y+ D Sbjct: 95 QLVKEYGERIGDVVTGIVQQAHRRMTIIDLGRVEALLPASEQVPGERYENGQRLKVYLLD 154 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 ++ RGP +++SR H + LF +EVPEIY+G+V++KAV+R+ G R+K+AV+S++ I Sbjct: 155 IKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAVWSNEPGI 214 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVG RGSRV+AVV+ELR+EKIDI+ W PD A F+ AL PA V +V LDE+ + Sbjct: 215 DPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYLDEEEKQA 274 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 EVIVP +QLSLAIGR GQN RLA +LT W IDI E + Sbjct: 275 EVIVPDDQLSLAIGREGQNARLAVKLTDWKIDIKPESQA 313 >gi|255033849|ref|YP_003084470.1| transcription elongation factor NusA [Dyadobacter fermentans DSM 18053] gi|254946605|gb|ACT91305.1| NusA antitermination factor [Dyadobacter fermentans DSM 18053] Length = 413 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 146/414 (35%), Positives = 239/414 (57%), Gaps = 10/414 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K+IDR ++SV+ + + R YGT + V INPE+GD+ ++R E+ Sbjct: 6 LIESFAEFASSKNIDRPTMISVLEEVFRTMIRKKYGTDDNFDVIINPESGDLEMWRTREI 65 Query: 69 VEEVENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ + I L AR ++G V++ + ++FGR VQ+A+Q +IQK+++ Sbjct: 66 VDDNSEDIWEYNKIPLNEARKIQSDFEVGEEVAEEVKLVEFGRRLVQTARQTLIQKIKDM 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++ Y ++KD+VGE+I+G V + VI VD ++ + R E IS++ R G+ VKS Sbjct: 126 EKEIMYEKYKDQVGEMITGEVYQTLRHEVIIVDSEGNELSLPRTEQISKDRFRKGESVKS 185 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I+ V P++ LSRT P F+ +LF +E+PEIY+GI+ V+ V R+PG RAK+AV S Sbjct: 186 VIHKVEMNNGSPKITLSRTSPVFLERLFEVEIPEIYDGIISVRKVVREPGERAKVAVESY 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + + AL PA V+ + +D + Sbjct: 246 DDRIDPVGACVGMKGSRIHSIVRELGNENIDVINYTDNLELLISRALSPAKVSSMQIDRE 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R+ V + +Q+SLAIG+ GQN++LA +L G ID+ + E+ + D E + Sbjct: 306 AKRVSVFLKPDQVSLAIGKGGQNIKLAGKLVGMEIDVFRDIEEQNDEDVDLTEFSD---- 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +DE I L G + + + E+ +E T ++ R+ E Sbjct: 362 --EIDEWIIDELHKIGLDTAKSVLALSKEELVRRTDLEEATVEDVLDILRKEFE 413 >gi|256824991|ref|YP_003148951.1| transcription termination factor NusA [Kytococcus sedentarius DSM 20547] gi|256688384|gb|ACV06186.1| transcription termination factor NusA [Kytococcus sedentarius DSM 20547] Length = 357 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 118/334 (35%), Positives = 193/334 (57%), Gaps = 18/334 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + V E+ I DV++ + ++ +A + G + RVE++ +G + ++ Sbjct: 5 MAVLREVEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + + G D P DFGR+ + +QVI Q++R+ E + Sbjct: 61 ---ED-------APVLEDGTRGEAGPEFDD--TPEDFGRIGAFTVRQVIRQRLRDLEDEA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK K G+I++G +++ + + VDLG +G++ E + E+ + GDR++ Y+ Sbjct: 109 VLGDFKGKEGDIVAGVIQQSNDPHAIHVDLGTVEGLLGTSEQVPLEDYKHGDRIRCYVIH 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GP + LSRTHP + KLF +EVPE+ +G V++++++R+ G R+K+AV ++ + Sbjct: 169 AKRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVRATQPGV 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + G+C+G G RV+AV+ EL+ EKIDIV + D FV AL PA VT V V+DE Sbjct: 229 NAKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVVDEKTRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 289 ARVTVPAHQLSLAIGKEGQNARLAARLTGWRIDI 322 >gi|328948922|ref|YP_004366259.1| NusA antitermination factor [Treponema succinifaciens DSM 2489] gi|328449246|gb|AEB14962.1| NusA antitermination factor [Treponema succinifaciens DSM 2489] Length = 484 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 139/422 (32%), Positives = 218/422 (51%), Gaps = 22/422 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66 E+ A++ EK ID + + I A + +G + V+ + D++++ Sbjct: 3 EMADAIRALSAEKGIDESSIRQTIERMILAAYQKSFGKGYDNCIVKFADDMSDVNVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 VV+ V + +I L+ A+ P I + PL P DF R AV KQ + + E Sbjct: 63 TVVDGVYDPVIEIELEEAQKLAPEAVIHDTLDIPLDPKRDFERGAVSVGKQEAHKDLNEN 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+K+K+G+II G +R GN+ V+LG +GV+ RE DR+++ Sbjct: 123 SSKKLLDEYKEKLGQIIIGYYQREHKGNIYVELGKVEGVLPVKYQSPREVYEKNDRIRAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV++ G QV+LSRT F+ + +EVPEI + + VK++SR+PG R K+AV S+ Sbjct: 183 IKDVKKVPSGIQVVLSRTDENFVKSILELEVPEIQDNTIVVKSISREPGYRTKIAVASNK 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG++G R+Q V+ EL EKID++ + D F+ NAL PA V VV+ + Sbjct: 243 IDVDPVGACVGLKGVRIQNVIRELEGEKIDVLRYDEDPHVFIKNALSPAEVKHVVIKDAE 302 Query: 306 GR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-----------------EED 347 R +V E S+AIG++G NVRLA++L W+ID+ TE EE Sbjct: 303 KREALAVVSDENFSIAIGKQGLNVRLANRLCNWSIDVKTEAMVTDEDLVENDTRRAAEEL 362 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 + + E Q VD+ +A +L G+ D+E V E ++ G D+ T Sbjct: 363 FGGSENESYEEILTVAQLPGVDQRVAEILKEAGYDDIE--VFVSSYESGALNGLDDVTKE 420 Query: 408 EI 409 ++ Sbjct: 421 QL 422 >gi|327334250|gb|EGE75964.1| transcription termination factor NusA [Propionibacterium acnes HL097PA1] Length = 323 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 130/338 (38%), Positives = 197/338 (58%), Gaps = 25/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYDG--TPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V V+D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 IVP QLSL IGR GQN RLA++LTGW IDI + Sbjct: 283 TARAIVPDYQLSLGIGREGQNARLAARLTGWRIDIRPD 320 >gi|309775437|ref|ZP_07670440.1| N utilization substance protein A [Erysipelotrichaceae bacterium 3_1_53] gi|308916826|gb|EFP62563.1| N utilization substance protein A [Erysipelotrichaceae bacterium 3_1_53] Length = 565 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 147/427 (34%), Positives = 247/427 (57%), Gaps = 5/427 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRL 65 + + A+ ++ + ++VV+ + +++ KA R + +RV++N ++GDI +++ Sbjct: 4 KDFMAAMQAIETDRKLSKEVVVDALQEALAKAFRKHIEIPDALVRVDVNEKSGDIKVYQQ 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE VE+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REA Sbjct: 64 RLIVENVEDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ Sbjct: 124 EKLVVYEEYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVV 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V +E +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S + Sbjct: 184 ITEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +IDP+GAC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ +E Sbjct: 244 ENIDPIGACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEER 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR---QKDFNERTQF 361 G + V+VP QLSLAIG+RG+N RLA +LTG IDI E + + ++ ++ + Sbjct: 304 KGGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAETDVNAAGINWKEIAMKQREE 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ + A + E A +E + + ++ E +E E Q E I Sbjct: 364 FLARQQEAKEAAQMERFEENAQPQEAVSLDDAGVSFQEVVTDEEVSEPQTAVDAVAEEIP 423 Query: 422 ITLQKKI 428 ++I Sbjct: 424 AEAVEEI 430 >gi|313897438|ref|ZP_07830981.1| transcription termination factor NusA [Clostridium sp. HGF2] gi|312957808|gb|EFR39433.1| transcription termination factor NusA [Clostridium sp. HGF2] Length = 566 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 154/451 (34%), Positives = 257/451 (56%), Gaps = 26/451 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRL 65 + + A+ ++ + ++VV+ + +++ KA R + +RV++N ++GDI +++ Sbjct: 4 KDFMAAMQAIETDRKLSKEVVVDALQEALAKAFRKHIEIPDALVRVDVNEKSGDIKVYQQ 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE VE+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REA Sbjct: 64 RLIVENVEDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ Sbjct: 124 EKLVVYEEYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVV 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V +E +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S + Sbjct: 184 ITEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +IDP+GAC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ +E Sbjct: 244 ENIDPIGACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEER 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE----------EDSINRQKD 354 G + V+VP QLSLAIG+RG+N RLA +LTG IDI E E ++ ++++ Sbjct: 304 KGGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAETDVDAAGINWKEIAMKQREE 363 Query: 355 FNERTQFFMQAINVD--EIIAH-----LLVAEGFADVEELACVKISEIASIEGFDEETAV 407 F R Q A ++ E A L G + E + +SE EE++ Sbjct: 364 FLARQQEAKLAAQMERFEENAQPQDALSLDDAGVSFQEAVTEEAVSEPVV-----EESSE 418 Query: 408 EIQGRAREYLEGIDITL--QKKIRELGVSEE 436 ++ A +E ++ ++ + E EE Sbjct: 419 PVEATASPAVEEATVSAPVEEVVEEAQPQEE 449 >gi|314923905|gb|EFS87736.1| transcription termination factor NusA [Propionibacterium acnes HL001PA1] gi|314966035|gb|EFT10134.1| transcription termination factor NusA [Propionibacterium acnes HL082PA2] gi|315094983|gb|EFT66959.1| transcription termination factor NusA [Propionibacterium acnes HL060PA1] gi|315104208|gb|EFT76184.1| transcription termination factor NusA [Propionibacterium acnes HL050PA2] gi|327328082|gb|EGE69851.1| transcription termination factor NusA [Propionibacterium acnes HL103PA1] Length = 323 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 198/338 (58%), Gaps = 25/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYDG--TPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V V+D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSGDPAEFVGAALSPSKVSSVTVIDSKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 IVP QLSLAIGR GQN RLA++LTGW IDI + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPD 320 >gi|293400740|ref|ZP_06644885.1| N utilization substance protein A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305766|gb|EFE47010.1| N utilization substance protein A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 559 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 135/342 (39%), Positives = 217/342 (63%), Gaps = 2/342 (0%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRL 65 + + A+ ++ + ++VV+ + +++ KA R + +RV++N +TG+I +++ Sbjct: 4 KDFMAAMQAIESDRKLPQEVVVEALQEALAKAFRKHIEIPDALVRVDVNEKTGNIKVYQQ 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE VE+ +ISL+ A+ + +++ GVV + + GR AV AK V+ QK+REA Sbjct: 64 RTIVETVEDDELEISLEDAKKINQELELDGVVEEEVDITQLGRAAVILAKNVMKQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y E+ DKV E++ GT++ VE IV++G + ++ +++ I E GDR++ Sbjct: 124 EKLIVYEEYCDKVDEMVVGTIESVEEKFCIVNIGKTLALMPKNQQIPNERYHEGDRIRVV 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V +E +G QVL+SR + +LF EVPEI+ G++++KA++R+ G R K+AV+S + Sbjct: 184 IIEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGVIEIKAIAREAGERTKMAVYSHN 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +IDP+GAC+G RG RVQ ++ EL EKIDI WS D A + NAL PA V V+ +E Sbjct: 244 ENIDPIGACIGPRGQRVQVIINELGGEKIDIFEWSEDVAELIKNALSPAEVLAVIPSEER 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 G + V+VP QLSLAIG+RG+N RLA +LTG IDI E + Sbjct: 304 KGGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAESD 345 >gi|317051740|ref|YP_004112856.1| transcription termination factor NusA [Desulfurispirillum indicum S5] gi|316946824|gb|ADU66300.1| transcription termination factor NusA [Desulfurispirillum indicum S5] Length = 382 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 141/356 (39%), Positives = 221/356 (62%), Gaps = 1/356 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E + + + EK++D+ +L + ++ A + Y +I I+ ETG + Sbjct: 2 KNEFISSIEQLCREKNLDKTTLLEAIETAVVAALKRKYSQECEIFFRIDDETGVFDVSFE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE+V + + +ISL A +G + P+ R+ Q+AKQ+I+Q+VR+ Sbjct: 62 KEVVEKVRDKSLEISLTDAIKIQEDAKVGQRIHVPIDIQTIARITAQTAKQIIMQRVRDV 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ E+++++GE+I V+RVE V++ +G DGV+ + + + + + GD VK+ Sbjct: 122 EKASLMDEYRERIGELILAPVERVEARRVVLSMGECDGVLLQSDILPTDTYKQGDVVKAV 181 Query: 186 IYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DV+ +RG Q+LLSRT QF+++LF EVPEI + V +KAV+R+ GSR+K+AV + Sbjct: 182 IRDVQLSRRGDVQILLSRTSEQFLLQLFREEVPEISSSNVVIKAVAREGGSRSKIAVKAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S +DPVGACVG++GSRV AVV E+ EKIDI+ WS + A F+ NAL PA V K+ + ++ Sbjct: 242 KSGMDPVGACVGVKGSRVSAVVEEIGGEKIDIIEWSDEPALFICNALNPAEVVKMDIYDE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 G V+VP+ QLSLAIGR+GQN RLA++LT W IDI +EEE + + + + Sbjct: 302 EGVAVVVVPERQLSLAIGRKGQNARLAAKLTNWKIDIYSEEEYEAYLRGETPQARR 357 >gi|330836562|ref|YP_004411203.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374] gi|329748465|gb|AEC01821.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374] Length = 477 Score = 381 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 148/492 (30%), Positives = 259/492 (52%), Gaps = 30/492 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + ++ EK I +D+V+S + D ++ A + +GT ++ V+ + + +++L + Sbjct: 5 LSEAIKSMVEEKGISQDLVISTIEDFLRAAYKRKFGTDANAVVQFSDDLSNVTLNARRII 64 Query: 69 VEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VE+ + T +ISL+ A + +IG + P+ +F R+++QSAKQ Q +R+ + Sbjct: 65 VEDENYYDMTTEISLEEAEELVGKCEIGDELLVPIDLKEFDRISIQSAKQRSRQSLRDIQ 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 +D + E+++K G++I G V+R + VD+G+++G++ R SRE R GD+VK Y+ Sbjct: 125 KDTTFKEYENKTGQLIIGYVQRQIGDDFYVDIGSTEGILPRRNQSSREVYRQGDKVKFYV 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + G +V+LSRT + + LF +EVPEIY+ +++ + R+ G R K+AV+S Sbjct: 185 EKVEKTDHGVRVVLSRTSAELVKLLFELEVPEIYDHSIEIHDIVREAGYRTKVAVYSHRD 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDV 305 IDPVGACVG++G R+Q ++ E+ EKIDI+ + P+ F+ NAL PA V V+ L ++ Sbjct: 245 DIDPVGACVGLKGMRIQTIMKEIEGEKIDILKYDPNPEVFIRNALAPAEVKDVILLKQNE 304 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R IV QLSLAIG++G NVRLA+QL+ W I++ TE + + Sbjct: 305 RRALAIVDDTQLSLAIGKQGLNVRLANQLSDWIIEVKTEAQFAELDIASTARSR------ 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 A L F D +E+ V E+ E ++ E + +T + Sbjct: 359 -------AEAL----FTDADEVEDVSDYEMT-------EDVPALRFDEGEVADEDYVTEE 400 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + E + L +P ID+++ L +GI T+ +L + +K D Sbjct: 401 EDGDEGDL--NLSELP-IDAELIAKLNSHGIYTVGQYINLDDAELTSLDDVTVEEKQKLD 457 Query: 486 GFLSSLGTPKDQ 497 + + +++ Sbjct: 458 EIFNEFVSIEEE 469 >gi|312134896|ref|YP_004002234.1| transcription termination factor nusa [Caldicellulosiruptor owensensis OL] gi|311774947|gb|ADQ04434.1| transcription termination factor NusA [Caldicellulosiruptor owensensis OL] Length = 353 Score = 381 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 128/344 (37%), Positives = 201/344 (58%), Gaps = 9/344 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDI 60 + EL D + E I++D V SV+ ++ A + + G +++V I+PE G + Sbjct: 9 DFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKGSV 68 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VVE V++ +I L+ A+ D IG +V+ +P F R A + +Q +I Sbjct: 69 KIYEYKKVVENVKDKKSEILLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTVIG 128 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRP 178 K+RE R + ++ KV I++G ++R++ NVIV++ G + ++ +E I E +P Sbjct: 129 KIREKRRSIIFEDYSSKVDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEYKP 188 Query: 179 GDRVKSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G +K YI +V+ +++ P V LSRTHP + +L EVPEI GI+++KA++R+ GSR Sbjct: 189 GVMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAGSR 248 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA V Sbjct: 249 SKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPAEV 308 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + L+ + V+VP QLSLAIGR G R A T W D Sbjct: 309 VHIDLNLIEKKAFVLVPNSQLSLAIGRGGTE-RSACSKTDWLED 351 >gi|119953577|ref|YP_945787.1| transcription elongation factor NusA [Borrelia turicatae 91E135] gi|119862348|gb|AAX18116.1| N utilization substance protein A [Borrelia turicatae 91E135] Length = 495 Score = 381 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 142/450 (31%), Positives = 240/450 (53%), Gaps = 26/450 (5%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +SI A + +GT + ++ + +TGD+ ++ ++VE Sbjct: 21 QMIANIANERGMSIDAIRKTVRESIMIAYKKYFGTSENALIKFDEDTGDLIVYSKKKIVE 80 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV++ +I +++ + G + P F R+++Q AKQ ++ E + Sbjct: 81 EVQDDILEILKDDSQEF--EVMEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDNEL 138 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 139 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYGLNDKVRVLVYSVK 198 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDP Sbjct: 199 KGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGLIKIHKIVRDPGYRTKVAVYSEKEEIDP 258 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + V ++DED+ + Sbjct: 259 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIRDALTPAKIDNVYIVDEDLHKAL 318 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK---------------D 354 V+V EQLSLAIG+ GQNVRLA++L W ID+ T + + + Sbjct: 319 VVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKASGEFKQETFEMFDKIIQ 378 Query: 355 FNERTQFFMQAINVDE------IIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 N + F + + E I LV GF D++ ++ + G E E Sbjct: 379 DNVQEDEFEEINKISELKILDNDIVDKLVEAGFDDIDSFLDASEEKLFEL-GIGYEKQEE 437 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELC 438 I +E + I I + EEL Sbjct: 438 INKILKEGMVIISND-DGSIEGMKDEEELL 466 >gi|184201252|ref|YP_001855459.1| transcription elongation protein NusA [Kocuria rhizophila DC2201] gi|183581482|dbj|BAG29953.1| transcription elongation protein NusA [Kocuria rhizophila DC2201] Length = 325 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 122/338 (36%), Positives = 191/338 (56%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I DV++ + ++ A G + R E+ TG ++++ Sbjct: 5 MSTLRLLERERDIPVDVLIPTIEQALLLAYMRSPGAIDGARAEVERRTGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D G D P FGR+A +A+QVI+QK+R+ E D Sbjct: 59 --------------APELDEQDQRIGEFDD--TPSGFGRIAAATARQVILQKLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 FK + GE++SG +++ V V+LG +G++ E + E R GDR+++++ + Sbjct: 103 VLGHFKGREGELVSGQIQQGNNPRMVQVNLGTVEGLLPPHEQVPGETYRHGDRIRAFVVE 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GP + LSR+HP + +LF MEVPEI +G V++ ++R+ G R K+AV + Sbjct: 163 AKRGFKGPSITLSRSHPDLVRRLFEMEVPEIADGSVEIVTLAREAGHRTKMAVEARRPGA 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+ EL +EKIDI+ +S D A F+ NAL PA V++VV+ D+ Sbjct: 223 NAKGACIGDMGSRVRAVMNELGEEKIDIIDFSQDPAEFIGNALSPARVSRVVVLDDAARS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +VP QLSLAIG+ GQN RLA++LTGW IDI+ E Sbjct: 283 ARAVVPDSQLSLAIGKEGQNARLAARLTGWKIDIVPES 320 >gi|188996513|ref|YP_001930764.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931580|gb|ACD66210.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 371 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 148/366 (40%), Positives = 225/366 (61%), Gaps = 19/366 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLF 63 ++L + + ++ EK+I DV+ + D I A + + +++ + E ++ + Sbjct: 2 SVKLKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKVL 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V VE+ T +I+L+ A++ DP+ D G V PL D GR+A+ AK+VI +KV Sbjct: 62 IKKKVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKVS 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + ERD Y EFKD G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDR++ Sbjct: 122 KVERDILYREFKDYEGKIITGTVRRFEGDDIIVDLGRIEAILPKEEQIPKEKYKIGDRIR 181 Query: 184 SYIYDVRREQ------RG-----------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 + + V +E +G P V+LSRTHP F+ KL +EVPEI G ++V Sbjct: 182 ALVLKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEIEV 241 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 KAV+R+PG RAK+AV+S D +IDPVG VG++GSR+ V +EL EKID++ W D A F Sbjct: 242 KAVAREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPAKF 301 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +I AL PA K L RIE+ VP+E+LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 302 IIRALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSEED 361 Query: 347 DSINRQ 352 ++ Sbjct: 362 FERIQK 367 >gi|150024572|ref|YP_001295398.1| transcription elongation factor NusA [Flavobacterium psychrophilum JIP02/86] gi|149771113|emb|CAL42580.1| Transcription elongation protein NusA [Flavobacterium psychrophilum JIP02/86] Length = 413 Score = 380 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 132/417 (31%), Positives = 234/417 (56%), Gaps = 9/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +KSIDR +++++ D + A + YG+ + + INP+ GD+ +++ Sbjct: 3 NLALIDSFSEFKDDKSIDRPTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIWQR 62 Query: 66 LEVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V + + +I+L AR +P +IG VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RVIVADDDLDLDHLEITLTDARKIEPDFEIGEEVSEEVKLIDLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD +G+I +G V V VI VD ++ ++ +++ I + R GD V Sbjct: 123 EHDNTNLYKQFKDLIGDIYTGEVHHVRPRVVILVDDEGNEIILPKEKQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPQIIMSRTSEKFLEKLFEQEIPEVFDGLIMVKNVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ + ++ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNTQLYITRALSPAKVSSIKIN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R EV + E++S AIGR G N++LA QLTG+ +D+I E + + + E + Sbjct: 303 EETKRAEVFLKLEEVSKAIGRGGHNIKLAGQLTGYELDVIREGTVAADDDVELTEFSD-- 360 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ + G + + ++++ +EET +E+ +E E Sbjct: 361 ----EIEAWVIEEFAKIGLDTAKSILSQDVNDLVRRTDLEEETILEVVKILKEEFEE 413 >gi|183601974|ref|ZP_02963343.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis HN019] gi|219682886|ref|YP_002469269.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis AD011] gi|241190463|ref|YP_002967857.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195869|ref|YP_002969424.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218859|gb|EDT89501.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis HN019] gi|219620536|gb|ACL28693.1| N utilization substance-like protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248855|gb|ACS45795.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250423|gb|ACS47362.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178187|gb|ADC85433.1| N utilization substance protein A [Bifidobacterium animalis subsp. lactis BB-12] gi|295793450|gb|ADG32985.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis V9] Length = 358 Score = 380 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 122/354 (34%), Positives = 203/354 (57%), Gaps = 15/354 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+A E+ ID + V + ++++++ A + RVE++P G +++ E+ Sbjct: 5 LNGIHALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWARDEIP 64 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E P+ ++G D P DFGR+A +A+QVI Q R+AE DR Sbjct: 65 QEPTEDN----------PHPAPELGEEYDD--TPHDFGRLAASTARQVIQQLFRKAEDDR 112 Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + F + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ Sbjct: 113 VFGAFSGQRGKLITGVVQQDVKDPANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVT 172 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ Sbjct: 173 TVARGLKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPG 232 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 I+P GA +G GSRV+AV+ L EKIDI+ WS + A F+ AL PA+V+ V V+ E Sbjct: 233 INPKGALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQ 292 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + EQLSLAIG+ GQN RLA++LTGW I I + + ++ + Sbjct: 293 TAIAFINDEQLSLAIGKEGQNARLAAKLTGWKIGIESNSAHAAKLREQAAKAAD 346 >gi|217077786|ref|YP_002335504.1| transcription elongation factor NusA [Thermosipho africanus TCF52B] gi|217037641|gb|ACJ76163.1| transcription termination factor NusA [Thermosipho africanus TCF52B] Length = 344 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 132/338 (39%), Positives = 212/338 (62%), Gaps = 1/338 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ LQ + + EK + D ++ V+ ++ A + +G ++ + IN +TG+I ++L Sbjct: 2 NLDFLQALEQLEEEKGVKVDEIIPVIEKALISAYKKDFGGEKNVEIIINRQTGEIEAYQL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 LEVVE VE QISL+ A + S IG +V L FGR+A Q+AKQV+IQK+RE Sbjct: 62 LEVVENVEKPNLQISLEEALKINSSAKIGDIVKKRLNIKKFGRIAAQTAKQVLIQKIREI 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++Q+ ++ + G+I + V RV + +G + + + E I E ++P +K Y Sbjct: 122 EKEKQFEKYSELAGKITTAEVVRVTKDWADIRIGKLETRLPKKEWIPGEEIQPASLIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+++++GP++L++R + +F+ L +EVPEI + +V+V + R+PG R K+AV S++ Sbjct: 182 VKDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEVVKIVREPGIRTKVAVKSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGAC+G G R+ A++ EL EKIDI+ WS D + +AL+PA V +V + + Sbjct: 242 PKVDPVGACIGEEGIRIAAILKELNGEKIDIIKWSDDPKELIASALQPANVIEVEILDYE 301 Query: 306 GRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + VIV QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 NKASRVIVSPNQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|260060676|ref|YP_003193756.1| transcription elongation factor NusA [Robiginitalea biformata HTCC2501] gi|88784806|gb|EAR15975.1| transcription elongation factor NusA [Robiginitalea biformata HTCC2501] Length = 410 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 132/416 (31%), Positives = 230/416 (55%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L++ +K IDR +++++ + + A + +G+ + + INP+ GD+ ++R Sbjct: 3 NLALIESFSEFKDDKFIDRVTLMAILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K+ Sbjct: 63 RVVVPDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLIAKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + +I +D ++ ++ +++ I + R GD V Sbjct: 123 EHDNTTIYKQFKDLEGEIYTAEVHHIRHKAIILLDDEGNELIMPKEKQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P+F+ +LFH E+PE+++G++ +K R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPLIIMSRTSPKFLEQLFHQEIPEVFDGLITIKKAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V +L PA VT+V L+ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLMVTRSLSPARVTQVKLN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F + Sbjct: 303 DENMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFRD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++E I L G + + ++ +EET +++ +E E Sbjct: 358 ----EIEEWIIMELRKIGLDTARAVLEQDVEDLVKRTDLEEETILDVIRILKEEFE 409 >gi|150021290|ref|YP_001306644.1| transcription elongation factor NusA [Thermosipho melanesiensis BI429] gi|149793811|gb|ABR31259.1| NusA antitermination factor [Thermosipho melanesiensis BI429] Length = 344 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 128/338 (37%), Positives = 215/338 (63%), Gaps = 1/338 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ LQ + + EK I D ++ ++ ++ A + +G ++ + IN +TG+I L++L Sbjct: 2 NLDFLQALEQLEEEKGIKVDEIIPIIEKALVSAYKKDFGGEKNVEITINRQTGEIELYQL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 LEVV++VE T QISL+ A + IG + + FGR+A Q+AKQV+IQ++RE Sbjct: 62 LEVVDKVEKETTQISLEDALKISSNAKIGDTIRKRINVKKFGRIAAQTAKQVLIQRIREI 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++Q+ ++ + G+I + V R+ + +G + + + E I E + P +K Y Sbjct: 122 EKEKQFEKYSELAGKITTAEVIRITKEWADIRIGKLETRLPKKEWIPGETIEPASLIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+++++GP++L++R + +F+ L +EVPEI + +V++ + R+PG R K+AV S++ Sbjct: 182 VKDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEIVKIVREPGIRTKVAVKSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 +DPVGAC+G G R+ A++ EL+ EK+DI+ WS D + +AL+PA V +V +LD + Sbjct: 242 PKVDPVGACIGEEGVRIAAILRELKGEKLDIIKWSDDPKELIASALQPANVVEVEILDPE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +IVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 NKASRIIVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 >gi|149370939|ref|ZP_01890534.1| transcription elongation factor NusA [unidentified eubacterium SCB49] gi|149355725|gb|EDM44283.1| transcription elongation factor NusA [unidentified eubacterium SCB49] Length = 410 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 133/417 (31%), Positives = 227/417 (54%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +K IDR +++++ + + A + YG+ + + +NP+ GD+ ++R Sbjct: 3 NLALIDSFSEFKDDKQIDRVTLMAILEEVFRNALKKKYGSDDNFDIIVNPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV +V + +ISL AR + ++G VS + MD GR ++ + +Q +I K+ Sbjct: 63 RVVVADIDVMDPNEEISLTDARKIEDDFEVGEDVSQEVKLMDLGRRSILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + VI +D ++ ++ +D I + R GD V Sbjct: 123 EHDNTIIYKQFKDMEGEIYTAEVHHIRHRAVILLDDEGNEMIMPKDRQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + V + P +++SR P F+ KLF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGIVESVELKGNKPTIIMSRASPLFLEKLFEQEIPEVFDGLINVKKVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA VT V ++ Sbjct: 243 TYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENITLFITRALSPAKVTSVKVN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R EVI+ E++S AIGR G N+RLA QLTG+ ID++ E + K+F++ Sbjct: 303 EENKRAEVILKPEEVSKAIGRGGHNIRLAGQLTGYEIDVLREGAEEDVELKEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ I G + + + ++ + +EET + +E E Sbjct: 358 ----EIEAWIIEEFHKIGLDTAKSVLEYDVKDLVNRIDLEEETIQHVIDILKEEFEE 410 >gi|126663078|ref|ZP_01734076.1| transcription elongation factor NusA [Flavobacteria bacterium BAL38] gi|126624736|gb|EAZ95426.1| transcription elongation factor NusA [Flavobacteria bacterium BAL38] Length = 413 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 136/416 (32%), Positives = 234/416 (56%), Gaps = 9/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ D + A + YG+ + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE EVE+ +ISL AR +P ++G VS+ + + GR A+ S +Q +I K+ Sbjct: 63 RVVVEDGEVEDPNSEISLTEARRIEPDFEVGEDVSEEVKLIQLGRRAILSLRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD +G+I + V V VI+ D ++ V+ +++ I + + GD V Sbjct: 123 EHDNTNLYKQFKDLIGDIYTAEVHHVRPKAVILMDDEGNEIVLPKEKQIPNDYFKKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I +V + PQ+++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+AV Sbjct: 183 RGVIENVELKGNKPQIIMSRTAPEFLEKLFEQEIPEVFDGLITIKKVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ V ++ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINFTTNAQLYITRALSPAKVSTVKIN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ EV + E++S AIGR G N++LAS LTG+ ID+I E + E + Sbjct: 303 EEAKTAEVFLKIEEVSKAIGRGGNNIKLASLLTGYEIDVIREGIAQEEDDVELREFSD-- 360 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ I G + ++++ +EET +++ +E LE Sbjct: 361 ----EIEAWIIEEFEKIGLDTARSVLNQDVADLVRRTDLEEETILDVINILKEELE 412 >gi|313836822|gb|EFS74536.1| transcription termination factor NusA [Propionibacterium acnes HL037PA2] gi|314929769|gb|EFS93600.1| transcription termination factor NusA [Propionibacterium acnes HL044PA1] gi|314972198|gb|EFT16295.1| transcription termination factor NusA [Propionibacterium acnes HL037PA3] gi|328907626|gb|EGG27390.1| transcription elongation factor NusA [Propionibacterium sp. P08] Length = 323 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 197/340 (57%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A + +V+++ TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVRGAKVQLDRTTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D ++ G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGEVIGWYDG--TPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++++G V++ + V VDLG +G++ E + E G R++ Y+ Sbjct: 103 KYGHFAAVEGDVVTGVVQQSYRDTRTVRVDLGTLEGIMPPSEQVPGEKYFHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI +V++KA++R+ G R+K+AV S +S Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQEVVEIKALAREAGHRSKIAVVSHNSD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V V+D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELGEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNQ 322 >gi|239617901|ref|YP_002941223.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239506732|gb|ACR80219.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 129/324 (39%), Positives = 201/324 (62%), Gaps = 1/324 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K+I +D V+S++ ++Q A R +GT +++ V I+ TGDI+++ L+VV+EVEN +I Sbjct: 16 KNIKKDEVISILEKALQSAYRKNFGTENEVEVRIDRLTGDIAIYEKLKVVDEVENPYREI 75 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 +L A+ D +I G V L F R+A Q+A+QV+IQK+RE E++ + + G Sbjct: 76 TLSEAKKIDSDAEIDGYVYRKLNIKKFKRIAAQTARQVLIQKIREMEKENLFQTYSALKG 135 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 + + + RV + +G + + E I E LR G +K ++ DV R +GP++L Sbjct: 136 SVTTAEILRVTENWADIRIGKLESRLPTREMIPGERLRAGSFIKVFVVDVVRTTKGPKIL 195 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 ++R +F+V+L ++VPEI +G V VKAV+R+ G R K+AV S++ +DP+GAC+G G Sbjct: 196 VTRKGTEFVVELLKLQVPEIESGDVVVKAVAREEGIRTKVAVASTNPKVDPIGACIGEGG 255 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLS 318 R+ V+ E+R EK+DI+ WS D A FV NA+ PA +V ++ V V QLS Sbjct: 256 VRIAEVLREIRPEKVDILKWSDDPAEFVGNAIAPATAVEVKIVSSANREAVVYVSPTQLS 315 Query: 319 LAIGRRGQNVRLASQLTGWTIDII 342 LAIG+ GQN RLA++LTGW +DI Sbjct: 316 LAIGKGGQNARLAAKLTGWKVDIK 339 >gi|317508529|ref|ZP_07966195.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] gi|316253173|gb|EFV12577.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] Length = 342 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 139/357 (38%), Positives = 207/357 (57%), Gaps = 31/357 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q A+ EK + + ++ +A ++ A + G +D RV+I+ + G + + Sbjct: 5 VQTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHHADARVDIDRKHGAVKVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD +I G D P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 59 --------------VAERDEDGNILGEYDD--TPADFGRIATMTARQVILQRLRDAEGDQ 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNS----DGVIRRDETISRENLRPGDR 181 + + K GEI++G V+R E G IV LG+ +GV+ E + E+L GDR Sbjct: 103 GFADLPVKEGEIVAGVVQRDARANERGLQIVKLGSELKSYEGVLPVAEQVPGESLVHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI G VQ+ AV+R+ G R+K+AV Sbjct: 163 VKCYVVSVKAGRRGPQITLSRTHPNLVRKLFALEVPEIGEGSVQIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA V Sbjct: 223 KSTVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALATRV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 LD + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ + Sbjct: 283 LDPVAKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARRAAADH 339 >gi|256419698|ref|YP_003120351.1| transcription elongation factor NusA [Chitinophaga pinensis DSM 2588] gi|256034606|gb|ACU58150.1| NusA antitermination factor [Chitinophaga pinensis DSM 2588] Length = 415 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 131/423 (30%), Positives = 233/423 (55%), Gaps = 11/423 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S N +E +IDR ++ V+ D + R YG+ + V +N E GD+ Sbjct: 1 MASINLIESFTEFKEAE---NIDRPTLMKVLEDVFKTLLRKKYGSDENFDVIVNTEKGDL 57 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R +V EVE+ QI+ A +P +G + + + +DFGR A+ +AKQ + Sbjct: 58 EILRRRTIVTDGEVEDDNAQIAYSEAILVEPDYQVGEDLYEEVEILDFGRRAILAAKQTL 117 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 ++ + +++ ++ D+VGEI++G V +V V++ D ++ ++ + E I + + Sbjct: 118 SARIGDLKKNILVKKYADRVGEIVTGEVYQVWKKEVLLLDDERNELILPKSEQIPTDYFK 177 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V + P ++LSRTHP F+ KL +EVPEI++G++ +K + R+PG RA Sbjct: 178 KGENVRAVVKKVEMKNNAPLIILSRTHPTFLAKLLEIEVPEIFDGLIVIKKIVREPGERA 237 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++ + + AL PA ++ Sbjct: 238 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDIINYTANIQLLIQRALTPARIS 297 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ++ +D + V + +Q+SLAIG++G N++LA +LTG+ ID+ +EE +++ Sbjct: 298 RMEVDNENKYASVFLKADQVSLAIGKKGVNIKLACELTGYEIDVFRDEEQEQ---AEYDI 354 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F ++E + L G + + + E+ +EET +I+ +E Sbjct: 355 DLAEFSD--EIEEWVLDELKRIGCDTARSVLDLTVEELVRRSDLEEETVKDIRRILQEEF 412 Query: 418 EGI 420 + Sbjct: 413 DKE 415 >gi|332878281|ref|ZP_08446007.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683732|gb|EGJ56603.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 410 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 137/417 (32%), Positives = 231/417 (55%), Gaps = 11/417 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N +I+L VAR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRIVVEDGAVTNDNQEIALSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + Y FKD +G+I+ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 122 HEYDSTTIYRRFKDLIGQIVVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGEH 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ I V + P +++SRT P F+ +LF E+PEI +GI+ V V R PG +AK+AV Sbjct: 182 VRGIIESVELKSTKPTIIMSRTSPIFLQRLFEQEIPEIADGIITVNKVVRIPGEKAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + + AL PA VT V L Sbjct: 242 DSFDERIDAVGACVGVRGARIHGIVRELGNENIDVIPFTNNVSLLITRALAPAHVTSVTL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ R +V +P E++S AIG+ G N+RLASQLTG+ ID+ E D + Sbjct: 302 NEEEKRADVFLPNEEVSKAIGKSGYNIRLASQLTGYEIDVYRE------GITDEDIELTE 355 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F ++ I L G + + + E+ + +EET EIQ E E Sbjct: 356 FDD--EIEGWIIEQLHNAGLDTAKSVLELTPEELMTRTDLEEETVKEIQRVLAEEFE 410 >gi|313676538|ref|YP_004054534.1| nusa antitermination factor [Marivirga tractuosa DSM 4126] gi|312943236|gb|ADR22426.1| NusA antitermination factor [Marivirga tractuosa DSM 4126] Length = 413 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 134/410 (32%), Positives = 239/410 (58%), Gaps = 12/410 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L++ A +K+IDR ++ ++ D + R Y T + + IN + GD+ ++R Sbjct: 2 DTLNLIESFADFARQKNIDRPTMIRILEDVFKTMIRKKYETDDNFDIIINADKGDLEIWR 61 Query: 65 LLEVV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 E+V E++ ++ ISL AR +P +IG V++ + FGR AV +A+Q +IQ Sbjct: 62 FREIVDDNSEDIWDHDK-ISLTEARKIEPDFEIGEEVAEEVELEHFGRRAVTTARQTLIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KV++ E+D + ++ + VGEII+G V ++ ++ D ++ V+ + E I ++ R G Sbjct: 121 KVKDLEKDILFNKYSELVGEIIAGEVYQILSRETLLTDADGNELVLLKSEQIPKDRFRKG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D V++ ++ V + P+++LSRT P F+ +LF EVPE+Y+ ++ +K + R+PG RAK+ Sbjct: 181 DSVRAVVHRVEMQNGNPKIILSRTSPVFLERLFEQEVPEVYDELITIKKIVREPGERAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 +V S D IDPVGACVGM+GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + Sbjct: 241 SVESYDDRIDPVGACVGMKGSRIHSIVRELQNENIDVINYTENMELYIQRALSPAKLSSM 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D + R+ V + +Q+SLAIG+ GQN++LAS+L G ID+ E D+ + + Sbjct: 301 KIDVENKRVSVYLKPDQVSLAIGKGGQNIKLASKLVGMEIDVFRELTDAE----EEDVLI 356 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 F + + + L G + + + E+ + +EET EI Sbjct: 357 DEFNDVLE--DWVIEELKKVGLDTAKRVLELGREELVRMTDLEEETIDEI 404 >gi|168704029|ref|ZP_02736306.1| transcription elongation factor NusA [Gemmata obscuriglobus UQM 2246] Length = 497 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 155/433 (35%), Positives = 241/433 (55%), Gaps = 36/433 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L++ D + E+ I +DV+ ++ +IQ AA + + V I+ TG I Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHI-------- 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VA+ D L P+ GR+A QSAKQ+IIQK+REAE D Sbjct: 65 --------------VAKYGD----------QELDPITLGRIAAQSAKQMIIQKIREAESD 100 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF K E++ GTV RV+ G IV LG S+ ++ R E I E G+RVK+ I + Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGKSEALLPRSEQIPGETHHVGERVKAIIME 160 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR++ +++LSR HP+F+ LF E+PEI I+ ++AV+R+ G R+K+AV S D + Sbjct: 161 VRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMKV 220 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 D VGACVG+RGSR++ V+ EL E+IDIV W+ + NAL+PA ++ V +GR Sbjct: 221 DAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGRA 280 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T +E + ++F Q + Sbjct: 281 IVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELAEA----LERAERWFGQLPHA 336 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 + + L+ EGF ++ +A G +E A E+ A EY + ++ +++++ Sbjct: 337 SPELTNALIEEGFLSYNDITMTDDEGLAEFTGLTQEAADEVVMYAEEYADVMERSVEEER 396 Query: 429 RELGVSEELCSIP 441 R+ ++ + + Sbjct: 397 RQAELAAKEARLQ 409 >gi|226355942|ref|YP_002785682.1| transcription elongation factor NusA [Deinococcus deserti VCD115] gi|226317932|gb|ACO45928.1| putative Transcription elongation factor NusA [Deinococcus deserti VCD115] Length = 395 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 140/394 (35%), Positives = 229/394 (58%), Gaps = 3/394 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ + VA ++I+ ++ S+ +A I V ++P++G++ Sbjct: 1 MTQPEINFADALREVAQARNINELQLIEAFEQSLAQAYTRNVEPDKRIEVHLDPQSGELE 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + + EVVE+VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK Sbjct: 61 VLVVREVVEKVEDEHLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +RE ER+ + E+KD+ G++++ V R + GN V+LG + ++ E I E L PG+ Sbjct: 121 MRETERNVVFNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGN 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK Y+ +VR+ +GP +L SR + + L E+PE+ NGIV+VKA+SR+ G R+K+A Sbjct: 181 RVKIYLKEVRKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAISREAGQRSKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS +S++DP+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + Sbjct: 241 VFSHNSNVDPIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGLIE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + D V V +QLSLAIG+ GQNVRLA++LTG+ ID+ E +I+ ++ Sbjct: 301 VQPDRREATVTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLR--ETAAISDLDAAMQQAL 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 Q + A F D + +A + Sbjct: 359 QDDQDGRDGDDTAKSAFDALFKDSKSVATASPDD 392 >gi|163786551|ref|ZP_02180999.1| transcription elongation factor NusA [Flavobacteriales bacterium ALC-1] gi|159878411|gb|EDP72467.1| transcription elongation factor NusA [Flavobacteriales bacterium ALC-1] Length = 410 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 135/413 (32%), Positives = 228/413 (55%), Gaps = 12/413 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ +K IDR +++++ D ++ A + YG + + INP+ GD+ ++R V Sbjct: 6 LIESFSEFKDDKLIDRVTLMAILEDVLRNALKKKYGDDDNFDIIINPDKGDLEIWRNRIV 65 Query: 69 VE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EVE +I L A+ +P ++G V++ + +D GR ++ + +Q +I K+ E + Sbjct: 66 VANGEVEEPNQEIELSEAQKIEPDFEVGEDVAEEVKLIDLGRRSILALRQNLISKIHEHD 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSY 185 Y FK+ GEI + V + + +I+ D ++ ++ +D I + R G+ V+ Sbjct: 126 NTNIYKHFKELEGEIYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGENVRGI 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV S D Sbjct: 186 IESVELKGSKPAIIMSRTSPLFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVAVDSYD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVGM+GSR+ +V EL +E ID++ ++ + FV AL PA VT + LDE+ Sbjct: 246 DRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNIQLFVTRALSPARVTSLKLDEEN 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R EV++ E++S AIGR G N+RLA QLTG+ ID+ E + K+F++ Sbjct: 306 MRAEVLLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGAEEDVELKEFSD-------- 357 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ I G + + ++++ +EET E+ +E E Sbjct: 358 -EIEGWIISEFSKAGLDTAKSILEQDVADLVKRTDLEEETIEEVIRILKEEFE 409 >gi|163753871|ref|ZP_02160994.1| transcription elongation factor NusA [Kordia algicida OT-1] gi|161326085|gb|EDP97411.1| transcription elongation factor NusA [Kordia algicida OT-1] Length = 410 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 133/416 (31%), Positives = 231/416 (55%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L++ +K IDR +++++ D + A + +G+ + + INP+ GD+ ++R Sbjct: 3 NLALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +I L AR +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RIVVADGEVEDPNQEIELTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD VG+I + V + + VI +D ++ V+ ++ I + R G+ V Sbjct: 123 EHDNTTIYKQFKDLVGDIYTAEVHHIRHRAVILLDDEGNEIVLPKENQIPSDFFRKGENV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P+F+ KLF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGIIDRVDLKGNKPMIVMSRTAPEFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA V+ + +D Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLQLYITRALSPARVSSLKID 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R+EV + E++S AIG+ G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 EEAKRVEVFLKPEEVSKAIGKGGFNIRLAGQLTGYEIDVYREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ + G + + ++ + +EET E+ +E E Sbjct: 358 ----EIEAWVIEEFKKIGLDTAKSVLDQELDFLVKQTDLEEETVGEVIRILKEEFE 409 >gi|313140899|ref|ZP_07803092.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] gi|313133409|gb|EFR51026.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] Length = 344 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 119/344 (34%), Positives = 201/344 (58%), Gaps = 17/344 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73 +A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E Sbjct: 12 QLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTE 71 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + D P+ ++G D P +FGR+A +A+QVI Q R+AE D+ + Sbjct: 72 D-----------DPHPAPELGEEYDD--TPRNFGRLAAATARQVIGQLFRKAEDDKVFGA 118 Query: 134 FKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 F + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 FSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVAR 178 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 179 GVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPK 238 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEV 310 GA +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V V+ E Sbjct: 239 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIA 298 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 + +QLSLAIG+ GQN RLA++LTGW I I + E + + Sbjct: 299 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTEAHAKKVAAE 342 >gi|298694558|gb|ADI97780.1| N utilization substance protein A, putative [Staphylococcus aureus subsp. aureus ED133] Length = 340 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 140/338 (41%), Positives = 208/338 (61%), Gaps = 7/338 (2%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 + G + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AK Sbjct: 2 DQGTFKVIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAK 61 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175 Q ++Q++R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E Sbjct: 62 QAVMQRLRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEK 121 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 P +R+K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G Sbjct: 122 YIPNERIKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGD 181 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K++VFS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ Sbjct: 182 RSKISVFSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQ 241 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V++DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 242 VLEVIVDETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV 301 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 ++A V E L A+ EE+ V + Sbjct: 302 -------VEAEKVTEEDVALEDADTTESTEEVTDVSVE 332 >gi|224531576|ref|ZP_03672208.1| transcription elongation protein NusA [Borrelia valaisiana VS116] gi|224511041|gb|EEF81447.1| transcription elongation protein NusA [Borrelia valaisiana VS116] Length = 482 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 134/465 (28%), Positives = 255/465 (54%), Gaps = 19/465 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ D + + +S+ A + +G+ + V+ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLIVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ K + G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SFLEVLEKDISKEN--FVEDGYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGVIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAKMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIREL 431 ++ E F ++ +++ +K+ + + I +E +I +A E L +K E+ Sbjct: 365 DVVEEEQFEEISKISDLKLLDPSVISNLSKEGLNDINNFLQADEGLLFNLGISYEKQEEI 424 Query: 432 G----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++ SI ++ + E G+ E++ C Sbjct: 425 NKILKEGMIIIANDNDESIGKVEEDEVLLCPECGVVINENMTSCP 469 >gi|261338246|ref|ZP_05966130.1| transcription termination factor NusA [Bifidobacterium gallicum DSM 20093] gi|270276899|gb|EFA22753.1| transcription termination factor NusA [Bifidobacterium gallicum DSM 20093] Length = 381 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 121/338 (35%), Positives = 194/338 (57%), Gaps = 19/338 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VE- 70 +A E+ ID + V ++++++ A +RVE++ G +++ E+ VE Sbjct: 8 IHQLAKEQGIDTETVDEALSEALRLAYLKTPNAAKHVRVELDERAGTFTIWARDEIRVEP 67 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ I ++G D P DFGR+A +A+QVI Q R AE DR Sbjct: 68 TEEDPHGHI------------ELGEEYDD--TPKDFGRLAAATARQVITQLFRRAEDDRI 113 Query: 131 YLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + F + G++++G +++ + NV V +G+ + ++ R E + E R GDR++ Y+ + Sbjct: 114 FGAFSGQKGKLMTGVIQQDVKDPTNVHVAVGDVEAILPRREQVPGERYRHGDRIRVYVVN 173 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RGP++++SR+HP + KLF EVPE+ +G V + A++R+ G+R K+AV ++ + Sbjct: 174 VNRGLRGPEIIVSRSHPDLVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGV 233 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GA +G GSRV+AV+ L +EKIDIV WS D A F+ AL PA V V+ + Sbjct: 234 NPKGALIGPGGSRVRAVMENLGNEKIDIVDWSDDPAKFIGAALSPANAAGVDVISDKNNT 293 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 294 AVAYIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESVE 331 >gi|260905192|ref|ZP_05913514.1| transcription elongation protein NusA [Brevibacterium linens BL2] Length = 320 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + + E+ I D ++ ++ ++ A + G D R E++ TG++ + + Sbjct: 5 LSVLRIIEREREIPLDTLIELIEQALFLAYQKTEGAWPDSRAELDKSTGEVRILAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E +N +P + P FGR+A Q+A+QVI Q++R+ E + Sbjct: 61 -EFDNDD-----------NPIGEFDD------TPTGFGRIAAQTARQVIHQRLRDVEDES 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 FK + GEI+SGT+++ + V VDLG+ + V+ E + E+ R G R++ YI D Sbjct: 103 VLGNFKGREGEIVSGTIQQGRDPQMVQVDLGDVEAVLPPHEQVPGESYRHGTRLRVYIAD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +G V +SRTHP + +LF E PEI +G V++ +++R+ G R KLAV ++ + Sbjct: 163 VHKGPKGTSVTVSRTHPNLVRRLFAHEAPEIADGTVEIVSLAREAGHRTKLAVRATKPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + G+C+G GSRV+AV+ EL EKIDIV +S D A F+ +AL PA +KV +LD D+ Sbjct: 223 NAKGSCIGELGSRVRAVMNELGQEKIDIVDYSDDPAKFIGHALSPAKASKVDILDPDLQE 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 IVP++QLSLAIG+ GQN RLA++LTGW IDI+ E Sbjct: 283 SRAIVPRDQLSLAIGKEGQNARLAAKLTGWKIDIVPGE 320 >gi|256371439|ref|YP_003109263.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008023|gb|ACU53590.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 330 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 134/345 (38%), Positives = 211/345 (61%), Gaps = 24/345 (6%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ E++ + +A EK + + +L +A+++ A + G + VEI+P +G I Sbjct: 1 MAVENPEVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIR 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + ++ D + + D P DFGR+A Q+AKQV++QK Sbjct: 61 VIC--------------------QELDENGTVVREWED--TPRDFGRIAAQAAKQVMLQK 98 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER+++Y E+ + G++++G V +++ ++DLG + ++ E+ S E R Sbjct: 99 IREAEREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGKIEAIMPHSESPSNERYSVNQR 158 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+YI +VRR +GPQ+++SRTHP + +LF +EVPEI +G+V+VKA++R+PG R K+AV Sbjct: 159 LKAYIVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAV 218 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+DPVGACVG RGSRV VV EL EK+DIV +S D A FV A+ PA + Sbjct: 219 WSNDRSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATV 278 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + V+VP +QLSLAIGR GQN RLA++LTG ++I + E Sbjct: 279 E--GRDALVVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSE 321 >gi|256820092|ref|YP_003141371.1| transcription elongation factor NusA [Capnocytophaga ochracea DSM 7271] gi|256581675|gb|ACU92810.1| NusA antitermination factor [Capnocytophaga ochracea DSM 7271] Length = 410 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 130/417 (31%), Positives = 231/417 (55%), Gaps = 14/417 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKIDDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 122 HEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGEH 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+AV Sbjct: 182 VRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINRVVRIPGEKAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ VV+ Sbjct: 242 DSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVVI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNERTQ 360 +E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + +FN+ Sbjct: 302 NEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEEDIELSEFND--- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREY 416 ++E + L G + + + ++ +EET E ++ A E+ Sbjct: 359 ------EIEEWVIEELQKAGLDTAKSVLELSAEDLMQRTDLEEETVNEVLRILAEEF 409 >gi|257439271|ref|ZP_05615026.1| transcription termination factor NusA [Faecalibacterium prausnitzii A2-165] gi|257198146|gb|EEU96430.1| transcription termination factor NusA [Faecalibacterium prausnitzii A2-165] Length = 358 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 138/350 (39%), Positives = 207/350 (59%), Gaps = 11/350 (3%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLEVV--EEV 72 + +E+ I + ++ + +I A + Y ++ VEI+P++G ++ + VV E+ Sbjct: 2 LEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDNVLVEIDPDSGKFNVALVQNVVADEDW 61 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + +I + A+ S ++G V PL DFGR+A Q+AK VI Q +REAER +Q Sbjct: 62 YDEHAEIGITEAQKIRKSYEVGDRVVTPLKTKDFGRIAAQTAKHVIRQGIREAERSQQLS 121 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETISRENLRPGDRVKSYIYDV 189 E + + +II TV RV+ IV L + ++ R+E + E G ++ Y+ DV Sbjct: 122 EIQSRAHDIIQATVTRVDNEKGIVALDLGKGGEAILPRNEQVPGETYTEGQTLQVYVVDV 181 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 +RG +V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G+R K+AV+S D++++ Sbjct: 182 VSGERGARVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAGARTKMAVWSKDANVN 241 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-GRI 308 PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA V KV L Sbjct: 242 PVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDVSEFISAALSPAKVLKVELLPGETRSC 301 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE----EDSINRQKD 354 V VP +QLSLAIG +GQN RL ++LTG+ IDI E ED + + Sbjct: 302 RVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEDEEPKAAE 351 >gi|319953582|ref|YP_004164849.1| nusa antitermination factor [Cellulophaga algicola DSM 14237] gi|319422242|gb|ADV49351.1| NusA antitermination factor [Cellulophaga algicola DSM 14237] Length = 410 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 135/415 (32%), Positives = 224/415 (53%), Gaps = 12/415 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ D + A + +G+ + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKFIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE EVE +ISL AR +P ++G VS+ + + GR A+ + +Q +I K+ Sbjct: 63 RIVVEDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIQLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y FKD G + + V + + VI+ D ++ ++ +D+ I + R GD V Sbjct: 123 EHDNTTIYKHFKDLEGGLYTAEVHHIRHKVVILLDDEGNELILPKDKQIPSDFFRKGDNV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P F+ LF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPVIVMSRTAPAFLEALFFQEIPEVFDGLITVKKVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V LD Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTSNPQLLVTRALSPARVSSVKLD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 DEKMTAQVYLRPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 ++ I G + + ++ +EET VE+ +E L Sbjct: 358 ----EIEGWIIEEFKKIGMDTARSVLEQDVDDLVKRTDLEEETIVEVVRILKEEL 408 >gi|224283743|ref|ZP_03647065.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] gi|310287990|ref|YP_003939249.1| transcription elongation factor NusA [Bifidobacterium bifidum S17] gi|311064863|ref|YP_003971589.1| n utilization substance protein A NusA [Bifidobacterium bifidum PRL2010] gi|309251927|gb|ADO53675.1| transcription elongation factor NusA [Bifidobacterium bifidum S17] gi|310867183|gb|ADP36552.1| NusA N utilization substance protein A [Bifidobacterium bifidum PRL2010] Length = 342 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 119/344 (34%), Positives = 201/344 (58%), Gaps = 17/344 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73 +A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E Sbjct: 10 QLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + D P+ ++G D P +FGR+A +A+QVI Q R+AE D+ + Sbjct: 70 D-----------DPHPAPELGEEYDD--TPRNFGRLAAATARQVIGQLFRKAEDDKVFGA 116 Query: 134 FKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 F + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 117 FSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVAR 176 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 177 GVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPK 236 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEV 310 GA +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V V+ E Sbjct: 237 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIA 296 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 + +QLSLAIG+ GQN RLA++LTGW I I + E + + Sbjct: 297 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTEAHAKKVAAE 340 >gi|325067076|ref|ZP_08125749.1| NusA antitermination factor [Actinomyces oris K20] gi|326771738|ref|ZP_08231023.1| transcription termination factor NusA [Actinomyces viscosus C505] gi|326637871|gb|EGE38772.1| transcription termination factor NusA [Actinomyces viscosus C505] Length = 346 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 195/354 (55%), Gaps = 28/354 (7%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N EL AD + ID D +L + D+I A + G + VEI+ TG +S Sbjct: 1 MDINMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMS 56 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V+E + T + P DFGR+A +A+ VI+Q+ Sbjct: 57 VLAPE--VDEEDQPTGE-------------------YFDDTPDDFGRIAQATARSVIVQR 95 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 +++ FKDK GE+ISGTV++ + V V L +G++ E + E R G Sbjct: 96 IQDRRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHG 155 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+ DV R RG Q++LSRTHP + KLF EVPE+ +G V++ +V+R+ G R K+ Sbjct: 156 DRVRAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPELSSGDVEIVSVAREAGHRTKM 215 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S ++ GAC+G G RV+AV+TEL EKIDIV +S D A F+ NAL PA V V Sbjct: 216 AVRSKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDYSEDPARFIANALSPARVAAV 275 Query: 300 -VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V+D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 276 GVIDAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITP 329 >gi|118587523|ref|ZP_01544947.1| transcription termination protein NusA [Oenococcus oeni ATCC BAA-1163] gi|118431974|gb|EAV38716.1| transcription termination protein NusA [Oenococcus oeni ATCC BAA-1163] Length = 473 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 130/353 (36%), Positives = 207/353 (58%), Gaps = 5/353 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE + Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +L ++ EV+ + + + +I LK AR+ + + + G + + P DFGR+A QS K Sbjct: 61 NLLQIKEVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKS 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLR 177 Q +RE E++ + ++ EI+S V R + + V + + + + I E + Sbjct: 121 TQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYK 180 Query: 178 PGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G R Sbjct: 181 TGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV ++DS++DPVG VG RGSRVQAVV EL E +DIV W D A ++ NAL PA V Sbjct: 241 SKVAVRTTDSNLDPVGTLVGPRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEV 300 Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E + Sbjct: 301 VDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAE 353 >gi|315225519|ref|ZP_07867329.1| transcription termination factor NusA [Capnocytophaga ochracea F0287] gi|314944463|gb|EFS96502.1| transcription termination factor NusA [Capnocytophaga ochracea F0287] Length = 410 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 130/417 (31%), Positives = 231/417 (55%), Gaps = 14/417 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 122 HEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGEH 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+AV Sbjct: 182 VRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINKVVRIPGEKAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ V++ Sbjct: 242 DSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVII 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNERTQ 360 +E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + +FN+ Sbjct: 302 NEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEEDIELSEFND--- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREY 416 ++E + L G + + + E+ +EET E ++ A E+ Sbjct: 359 ------EIEEWVIEELQKAGLDTAKSVLELSAEELMQRTDLEEETVSEVLRILAEEF 409 >gi|293192171|ref|ZP_06609383.1| transcription termination factor NusA [Actinomyces odontolyticus F0309] gi|292820367|gb|EFF79359.1| transcription termination factor NusA [Actinomyces odontolyticus F0309] Length = 342 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 125/344 (36%), Positives = 203/344 (59%), Gaps = 26/344 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +++ D +P + P +FGR+A +A+ VI+Q++R+A Sbjct: 58 -------------MAMDEDEDGNPIGEFDD------TPKNFGRIAQSTARSVIMQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G+II+GTV+ R ++ + + V+ E + E+ R GDR++ Sbjct: 99 DDQRVFGDFAGREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV + Sbjct: 159 AYVVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+ Sbjct: 219 TREGINAKGACIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D IVP QLSLAIG+ GQN RLA++LT + IDI + E Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNYHIDIHADTE 322 >gi|291543557|emb|CBL16666.1| transcription termination factor NusA [Ruminococcus sp. 18P13] Length = 353 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 133/345 (38%), Positives = 196/345 (56%), Gaps = 4/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 + + E S++ D+++ + ++ KA Y + ++RV+I+P T L Sbjct: 2 NNDFFAALSLLGAENSVETDLLVEKVKSAMTKAIHRAYPDSGDNVRVDIDPVTKTFDLCI 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV++ +I++ AR DPS +GG V L R A QSAKQ I +RE Sbjct: 62 IKTVVDDEPLDDNEINIDQARLIDPSAVVGGTVECKLDTASLSRNAAQSAKQSIRGDLRE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+ +F+DK E I+ TV +VE G V + ++ + R+E I E L+ G V Sbjct: 122 ISRENLLTKFQDKENECITATVSQVEPGRGTVTLIYDKTELYLFRNEQIPGEVLKEGQSV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K YI + +Q+ P + +SR H + +LF +EVPEIY+G V+V A+SR+ G+R K+AV Sbjct: 182 KVYITGIANKQKKPIIKISRAHRDLVKRLFELEVPEIYDGTVEVMAISREAGARTKIAVQ 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 S D ++D VGAC+G + SR+ AVV EL EKIDI+ +S F+ AL PA V V + Sbjct: 242 SHDPNVDAVGACIGPKRSRITAVVNELNGEKIDIINYSDKPEEFIAKALAPAEVLSVTIT 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D + V+VP QLSLAIG RGQN +LA++LTG+ IDI E E Sbjct: 302 DPENRSCTVVVPNNQLSLAIGNRGQNAKLAAKLTGYKIDIKPEFE 346 >gi|295395322|ref|ZP_06805525.1| transcription termination factor NusA [Brevibacterium mcbrellneri ATCC 49030] gi|294971825|gb|EFG47697.1| transcription termination factor NusA [Brevibacterium mcbrellneri ATCC 49030] Length = 320 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 122/334 (36%), Positives = 192/334 (57%), Gaps = 24/334 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + E+ I V++ ++ ++ A + G D R E++ +TG +++ + Sbjct: 5 LSALRMIEREREIPMKVLVDLIEQALLIAYQRTEGYYPDARAELDTKTGKATIWAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E ++ +P + P FGR+A Q+A+ VI Q++R+ E + Sbjct: 61 -EFDDDD-----------NPIGEFDD------TPEGFGRIAAQTARNVIHQRLRDVEDES 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 FK+ GEI+SG +++ +Y + V V+LG+ + V+ E + E G R++ YI D Sbjct: 103 VLGSFKNHEGEIVSGVIQQGKYEDMVQVNLGDVEAVLPPHEQVPGETYEHGRRIRVYITD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + Q+GP V +SR+HP + KLF EVPEI +G V++ +++R+ G R K+AV + + Sbjct: 163 VHKGQKGPSVTVSRSHPNLVRKLFAHEVPEIADGQVELVSLAREAGHRTKIAVAAKVPGL 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G+RV+AV+ EL +EKIDIV ++ + A FV NAL PA KV V+DE Sbjct: 223 NAKGACIGEYGTRVRAVMGELGEEKIDIVDYNENPAKFVANALSPAKAAKVEVIDESAKM 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 283 ARAFVPNDQLSLAIGKEGQNARLAAKLTGWKIDI 316 >gi|91217187|ref|ZP_01254149.1| transcription elongation factor NusA [Psychroflexus torquis ATCC 700755] gi|91184787|gb|EAS71168.1| transcription elongation factor NusA [Psychroflexus torquis ATCC 700755] Length = 411 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 126/417 (30%), Positives = 226/417 (54%), Gaps = 11/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++L+ +K IDR +++++ D + A + +G + + INP+ GD+ ++R Sbjct: 3 NIDLINSFSEFKDDKLIDRVTLMAILEDVFRNALKKKFGQDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISLK AR +P ++G VS+ + GR A+ + +Q +I K+ Sbjct: 63 RNVVNDGEVEDENKEISLKDARKIEPDFEVGEDVSEEVKLYQLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + + F+D +GEI + V V + VI+ D ++ +I ++ I + R GD + Sbjct: 123 EHDSTNTFKYFQDLIGEIYTAEVHHVRHNVVILLDDDGNELIIPKEHQIPSDFYRKGDSI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P ++LSRT P+F+ KLF E+PE+++G++ VK R PG +AK+AV Sbjct: 183 RGVIEKVELKGNKPIIILSRTTPKFLEKLFEQEIPEVFDGLITVKNAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA + + L+ Sbjct: 243 TYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNPQLYIQRALSPAKIVNIKLN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ EV + E++S AIGR G N+RLA LTG+ I++ + ++ + F Sbjct: 303 EEKKYAEVTLKPEEVSKAIGRGGHNIRLAGLLTGYNIEVFRD------GIEEEDVELTEF 356 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + + +S++ +EET + + ++ E Sbjct: 357 TD--EIEDWVIKEFGRIGLDTAKSILELDVSDLVRRTDLEEETVLNVVKILKQEFEE 411 >gi|227875842|ref|ZP_03993968.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC 35243] gi|269977478|ref|ZP_06184450.1| transcription termination factor NusA [Mobiluncus mulieris 28-1] gi|306819123|ref|ZP_07452837.1| transcription termination factor NusA [Mobiluncus mulieris ATCC 35239] gi|307700036|ref|ZP_07637085.1| transcription termination factor NusA [Mobiluncus mulieris FB024-16] gi|227843590|gb|EEJ53773.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC 35243] gi|269934394|gb|EEZ90956.1| transcription termination factor NusA [Mobiluncus mulieris 28-1] gi|304648099|gb|EFM45410.1| transcription termination factor NusA [Mobiluncus mulieris ATCC 35239] gi|307614797|gb|EFN94017.1| transcription termination factor NusA [Mobiluncus mulieris FB024-16] Length = 327 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 132/339 (38%), Positives = 201/339 (59%), Gaps = 24/339 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + V EK +D + +++ + +++ KA R+ G + RVE++ +TG++ ++ V Sbjct: 5 MTALRLVEAEKGMDFESLVATVEEALLKAYRNQSGVKAPARVEVDRKTGEVKVW-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E++ +G V + P DFGR A + K VIIQ+ +E E + Sbjct: 60 TELDEEGN--------------ALGDV---EVTPEDFGRTAAATVKSVIIQRFQEEEDKQ 102 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK+++G+++SG V + + VDLG+ +GVI E E+ R G+R++ Y+ Sbjct: 103 VLGDFKERIGQVVSGVVVAARDPKFIAVDLGDIEGVIPPAEQAPGEHFRDGERIRVYVLS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP + LSRTHP + LF+ EVPEI G+V +++V+R+PG R K+AV + + + Sbjct: 163 AARGMKGPHIELSRTHPGLVQGLFNREVPEIEKGLVVIESVAREPGHRTKIAVRALEKGM 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 +P GAC+G GSRV+AV+ EL EKIDI+ WS + F+ NAL PA V V VLDED Sbjct: 223 NPKGACIGPNGSRVRAVMNELNGEKIDIIDWSDNPVEFIANALSPAKVVSVRVLDEDRRL 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 283 ARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDSE 321 >gi|255536444|ref|YP_003096815.1| transcription elongation factor NusA [Flavobacteriaceae bacterium 3519-10] gi|255342640|gb|ACU08753.1| Transcription termination protein NusA [Flavobacteriaceae bacterium 3519-10] Length = 415 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 128/418 (30%), Positives = 230/418 (55%), Gaps = 9/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L++ EKSI + +++++ DS++ R + + V +NP+ GD +F Sbjct: 2 DGLALIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFL 61 Query: 65 LLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+ E+ +I + A+ DP+ ++G + +P GR ++ + KQ++ K+ Sbjct: 62 NKTIVEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATKL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 +E Y EF+DK+GEI+ G V + + +VI+ D +++ ++ ++ I + + G+ Sbjct: 122 QEHNNAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGEN 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+AV Sbjct: 182 IRTIVESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG++GSR+ VV EL++E ID++ WS + V AL V K+ + Sbjct: 242 DAYDDRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIEI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE-EDSINRQKDFNERTQ 360 +E+ V P E++S IG++GQN+RLAS L+G+ ID+ E ED K+F Sbjct: 302 NEETKYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDVHRESAEDDDVELKEFAGS-- 359 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 A ++++ I G + + + + +EET E++ +E E Sbjct: 360 ---DAGDIEQWIIDEFNKVGLTTAKSVLDKDTEALLKMVDLEEETIEEVKQILKEEFE 414 >gi|329947836|ref|ZP_08294768.1| transcription termination factor NusA [Actinomyces sp. oral taxon 170 str. F0386] gi|328523460|gb|EGF50558.1| transcription termination factor NusA [Actinomyces sp. oral taxon 170 str. F0386] Length = 346 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 195/354 (55%), Gaps = 28/354 (7%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N EL AD + ID D +L + D+I A + G + VEI+ TG +S Sbjct: 1 MDINMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMS 56 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V+E + T + P DFGR+A +A+ VI+Q+ Sbjct: 57 VLAPE--VDEDDQPTGE-------------------YFDDTPDDFGRIAQATARSVIVQR 95 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 +++ FKDK GE+ISGTV++ + V V L +G++ E + E+ R G Sbjct: 96 IQDRRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGESYRHG 155 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+ Sbjct: 156 DRVRAYVTDVSRGTRGAQIVLSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKM 215 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V Sbjct: 216 AVRSKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAV 275 Query: 300 -VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V+D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 276 GVIDAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITP 329 >gi|225012171|ref|ZP_03702608.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A] gi|225003726|gb|EEG41699.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A] Length = 410 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 128/417 (30%), Positives = 229/417 (54%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +K IDR ++ ++ D + + +G+ + + INP+ GD+ ++R Sbjct: 3 NLALIDSFSEFKDDKLIDRVTLMVILEDVFKNTLKRKFGSDENFDIIINPDKGDLEIWRN 62 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ VE+ +I+LK AR +P ++G VS+ + +D GR +Q +Q ++ K+ Sbjct: 63 RVVVEDGMVEDPNQEIALKEARLIEPDFEVGEDVSEEVKLVDLGRRTIQYLRQNLVAKIF 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + + +FKD+ GE+ + V + +I +D ++ ++ +D I + R GD + Sbjct: 123 EHDSTTIFKQFKDREGELYTAEVHHIRSREIILLDDDGNEIILPKDRQIPSDFFRKGDNI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V P+++LSRT P F+ KLF E+PE+++G++ +K R PG +AK+AV Sbjct: 183 RGIIETVELRGNKPRIILSRTSPIFLEKLFEQEIPEVFDGLITIKKAVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V + ++ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNLQLFIARALSPAKVNSLKIN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ R+EV + E++S AIG+ G N+RLA +LTG+ ID+ E + K+F++ Sbjct: 303 EETKRVEVFLNPEEVSKAIGKGGANIRLAGKLTGYEIDVFREGVEEDIELKEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ I G + + ++ +++ +EET ++ +E E Sbjct: 358 ----EIEGWIIEEFKKVGLDTAKSILELEKADLIKRTDLEEETVDDVLKILKEEFEE 410 >gi|298206855|ref|YP_003715034.1| transcription elongation factor NusA [Croceibacter atlanticus HTCC2559] gi|83849489|gb|EAP87357.1| transcription elongation factor NusA [Croceibacter atlanticus HTCC2559] Length = 410 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 137/417 (32%), Positives = 231/417 (55%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ + + A + +G + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKLIDRVTLMAILEEVFRSALKRKFGEDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ VE+ +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RVVVEDGMVEDDNSEISLTQARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FK+ +GE+ S V + + VI+ D ++ ++ +D I + R G+ V Sbjct: 123 EHDNTNIYNQFKELIGEMYSAEVHHIRHRVVILLDDEGNELIMPKDRQIPSDFFRKGESV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P ++ SRT P F+ KLF E+PE+++G++QVK V R PG +AK+AV Sbjct: 183 RGVIESVELKGNKPAIIFSRTSPLFLEKLFEQEIPEVFDGLIQVKKVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + + AL PA VT V L+ Sbjct: 243 SYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTSNDQLLINRALSPARVTSVKLN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + R EV++ E++S AIGR G N+RLASQLTG+ ID+ E + K+F++ Sbjct: 303 SETMRAEVMLKPEEVSKAIGRGGHNIRLASQLTGYEIDVFREGVEEDVELKEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D I G + + + ++ +EET E+ RE + Sbjct: 358 ----EIDAWIIAEFSKIGLDTAKAILEQDLDDLVRRTDLEEETIREVVQILREEFDQ 410 >gi|146299389|ref|YP_001193980.1| transcription elongation factor NusA [Flavobacterium johnsoniae UW101] gi|146153807|gb|ABQ04661.1| NusA antitermination factor [Flavobacterium johnsoniae UW101] Length = 417 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 134/419 (31%), Positives = 235/419 (56%), Gaps = 8/419 (1%) Query: 7 LELLQIADAVAYEKS---IDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + K IDR +++++ D + A + YG+ + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDNKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60 Query: 64 RLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R +V E+++ +I+L AR + +IG VS+ + +D GR A+ + +Q +I K Sbjct: 61 RRRVIVADEDLDFENEEITLTEARMIEADFEIGEEVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD +G+I + V V VI VD ++ V+ +++ I + R GD Sbjct: 121 IHEHDNTNLYKQFKDIIGDIYTAEVHHVRPRVVILVDDEGNEIVLPKEKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPQIIMSRTSEKFLEKLFEQEIPEVFDGLITVKNVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V+ + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNIQLFITRALSPAKVSSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ R EV + E++S AIGR G N++LA QLTG+ +D+I E + + + + Sbjct: 301 IDEESKRAEVFLKLEEVSKAIGRGGHNIKLAGQLTGYELDVIREGDVAGTVADEDDVELT 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F ++E + G + + + ++ +EET +++ +E + Sbjct: 361 EFSD--EIEEWVIEEFAKIGLDTAKSILKHDVEDLVRRTDLEEETILDVMKILKEEFDS 417 >gi|213962910|ref|ZP_03391170.1| transcription termination factor NusA [Capnocytophaga sputigena Capno] gi|213954567|gb|EEB65889.1| transcription termination factor NusA [Capnocytophaga sputigena Capno] Length = 410 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 127/416 (30%), Positives = 229/416 (55%), Gaps = 12/416 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +FR Sbjct: 2 NSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIFR 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ V N QI+L AR +P ++G VS+ + D GR A+ + +Q +I K+ Sbjct: 62 NRVVVEDDAVTNDNQQIALSAARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 122 HEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGEH 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+AV Sbjct: 182 VRGIIESVELKSTKPTIIMSRTSPVFLERLFEQEIPEIADGLITISKVVRIPGEKAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + AL PA V+ V++ Sbjct: 242 DSFDERIDAVGACVGVRGARIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVII 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + + Sbjct: 302 NEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYRE------GVTEEDIELTE 355 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREY 416 F +++ + L G + + + E+ +EET E +Q A E+ Sbjct: 356 FND--EIEQWVIEELQKAGLDTAKSVLELSAEELMQRTDLEEETVNEVLQVLAAEF 409 >gi|196019394|ref|XP_002118970.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens] gi|190577493|gb|EDV18544.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens] Length = 348 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 150/338 (44%), Positives = 236/338 (69%), Gaps = 11/338 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AVA +K I ++ ++ + +++ AA+ YG ++ IN G+I L+R + Sbjct: 10 EILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYREVL 69 Query: 68 VV----------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VV +E I + A++ DP I+ G V+ LPP++ GR+ SAKQ+ Sbjct: 70 VVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAKQI 129 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 II KV+E E+D+ + E+K++VGE+++G V+++E G IV LG+++ ++++D+T+ + + Sbjct: 130 IINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLGSAEAILKKDQTLKTDFYK 189 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+++ + + +E GP ++LSRTH F+++LF EVPEIY+ I++VK ++RDPGSR Sbjct: 190 LGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPGSRT 249 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL-RPAIV 296 K+AV+SSD SIDPVG+CVGMRG RVQA++ EL+ EKIDIV WS D ATFV+N+L V Sbjct: 250 KIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSSIRV 309 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 +KV++DE+ +IE+IVP+E S AIGRRGQN++L S+L Sbjct: 310 SKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISEL 347 >gi|83815918|ref|YP_445895.1| transcription elongation factor NusA [Salinibacter ruber DSM 13855] gi|83757312|gb|ABC45425.1| N utilization substance protein A [Salinibacter ruber DSM 13855] Length = 546 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 144/409 (35%), Positives = 230/409 (56%), Gaps = 12/409 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ +A K +DRD + ++ D + R YG+ + NP+ GDI + + E Sbjct: 5 DLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQE 64 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EVE+ +I A+ D +G V+ L +FGR AV +A+Q Q++R+ Sbjct: 65 VVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++ Y E+ + +G+I+ G + +V ++ +++ V+ RDE I ++ R G+ +++ Sbjct: 125 EKEQVYQEYTELIGDIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTV 184 Query: 186 IYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VRR+ PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S Sbjct: 185 VKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +DPVGACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L D Sbjct: 245 DEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED R V VP +++S AIG+RG N++LASQLTG+ ID+ E + + + F Sbjct: 305 EDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYRE-----IPADEEDIDIEQF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + E L G + + + +A D +TA ++ Sbjct: 360 GDEL--TEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLE 406 >gi|154509097|ref|ZP_02044739.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC 17982] gi|153798731|gb|EDN81151.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC 17982] Length = 342 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 124/344 (36%), Positives = 203/344 (59%), Gaps = 26/344 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +++ D +P + P +FGR+A +A+ VI+Q++R+A Sbjct: 58 -------------MAMDEDEDGNPIGEFDD------TPKNFGRIAQSTARSVIMQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G+II+GTV+ R ++ + + V+ E + E+ R GDR++ Sbjct: 99 DDQRVFGDFAGREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV + Sbjct: 159 AYVVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV++V+ +L EKIDIV +S D A FV N+L PA VT+VV+ Sbjct: 219 TREGINAKGACIGPMGARVRSVMADLGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D IVP QLSLAIG+ GQN RLA++LT + IDI + E Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNYHIDIHADTE 322 >gi|257452235|ref|ZP_05617534.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] gi|317058778|ref|ZP_07923263.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] gi|313684454|gb|EFS21289.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] Length = 353 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 211/345 (61%), Gaps = 3/345 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + +VV E++ + +ISL+ A+ +G V + F R A+Q+ KQ++ Sbjct: 61 KVYEVKKVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R+ E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDIK 345 >gi|91200793|emb|CAJ73846.1| strongly similar to transcription elongation protein NusA [Candidatus Kuenenia stuttgartiensis] Length = 357 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 139/350 (39%), Positives = 218/350 (62%), Gaps = 32/350 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 ++ LL++ D++ +K I ++VV + ++ AA+ + + + ++I+ +TG+I Sbjct: 2 DKENLLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEI---- 57 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VA + D + P + GR+ Q+AKQVIIQK+RE Sbjct: 58 ------------------VAMEGDR----------KIDPSELGRITAQTAKQVIIQKIRE 89 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD + +F + G I+SG V+R E +IV+LG ++GV+++ E + E+ G+RV++ Sbjct: 90 AERDVIFEDFCKRKGVIVSGKVQRFEGATMIVNLGKTEGVLQKSEQTANEHYTIGERVRA 149 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DV++ ++ LSRTHP F+ KLF +EVPEI +++KA++R+ G R+K+AV SS Sbjct: 150 VILDVKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVASS 209 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++D VGACVGMRGSR++ +V EL EKIDI+ WS + + NAL+PA V+ ++L + Sbjct: 210 DENVDCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILSPE 269 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 ++VP +QLSLAIG+RGQNVRLAS+LT W IDIIT+ E ++ D Sbjct: 270 NRTATIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAEFEKRQKAD 319 >gi|294507805|ref|YP_003571863.1| transcription factor [Salinibacter ruber M8] gi|294344133|emb|CBH24911.1| transcription factor [Salinibacter ruber M8] Length = 536 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 145/409 (35%), Positives = 230/409 (56%), Gaps = 12/409 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ +A K +DRD + ++ D + R YG+ + NP+ GDI + + E Sbjct: 5 DLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQE 64 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EVE+ +I A+ D +G V+ L +FGR AV +A+Q Q++R+ Sbjct: 65 VVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++ Y E+ + +GEI+ G + +V ++ +++ V+ RDE I ++ R G+ +++ Sbjct: 125 EKEQVYQEYTELIGEIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTV 184 Query: 186 IYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VRR+ PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S Sbjct: 185 VKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +DPVGACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L D Sbjct: 245 DEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED R V VP +++S AIG+RG N++LASQLTG+ ID+ E + + + F Sbjct: 305 EDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYRE-----IPADEEDIDIEQF 359 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + E L G + + + +A D +TA ++ Sbjct: 360 GDEL--TEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLE 406 >gi|229815167|ref|ZP_04445504.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM 13280] gi|229809397|gb|EEP45162.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM 13280] Length = 426 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 211/388 (54%), Gaps = 38/388 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ + EK ID+ +L + ++ + + +V I+ TG I ++RL Sbjct: 8 MMEALMELCQEKHIDQLYLLDRLEAALAETYARVLKLDWGAKVTIDRTTGKIYVYRL--- 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E +++ D + + P D R+A Q+AK I VR A R+ Sbjct: 65 -EPIDDS-----------MDEEGNFTEYEEIDVTPKDVSRLAAQTAKAEINAIVRNAARE 112 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENLR 177 + Y EF +VG++I+GTV + IV + + + R+E + E Sbjct: 113 QIYEEFSGRVGDLINGTVLQSTPDFTIVKIREGVEAELPHFDQRRYPDERNERPAGERYL 172 Query: 178 PGDRVKSYIYDVRREQ------RG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 +K+ I DVR RG P +++SRTH + M +LF EVPE+Y G V++K Sbjct: 173 HNQHLKAVIIDVRDPNSTLPPVRGEHSRPPIVISRTHSELMRRLFEQEVPEVYEGTVELK 232 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 +++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +V Sbjct: 233 SIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDEDPAVYV 292 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 293 ANALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET-L 351 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHL 375 + + K+ Q ++ + +D+ A L Sbjct: 352 AADILKNVPLAPQPVVEDL-IDDEPADL 378 >gi|320334652|ref|YP_004171363.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211] gi|319755941|gb|ADV67698.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211] Length = 397 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 139/381 (36%), Positives = 222/381 (58%), Gaps = 22/381 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M N E VA ++I+ ++ S+ +A + V ++P++G+I Sbjct: 1 MSEFNFAE---ALREVAQSRNINEMQLIEAFEQSLAQAYTRNVDPDKRVEVHLDPKSGEI 57 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + + EVVE+VE+ QISL A + DP ++G + P+ F R+A+Q+AKQ + Q Sbjct: 58 EVLVVKEVVEKVEDENVQISLADALELDPEAELGEEMVFPVEREKFTRIALQAAKQTLTQ 117 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+RE ER+ + E+KDK G++++ V R++ GN VDLG + ++ + E I E L PG Sbjct: 118 KMRETERNVVFNEYKDKEGQVLNAVVARLDNKGNYFVDLGAGEAILPQREAIPGERLMPG 177 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +RVK Y+ +VR+ +GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+ Sbjct: 178 NRVKIYLKEVRKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKV 237 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS + ++DP+GAC+G RG+R+QAV EL E++D+++W F+ NAL PA V + Sbjct: 238 AVFSHNPNVDPIGACIGHRGNRIQAVTGELGRERVDVILWDATPREFIRNALSPAKVGLI 297 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++ D V V +QLSLAIG+ GQNVRLA++LTG+ +D+ + S Sbjct: 298 EVNADTREATVTVTPDQLSLAIGKGGQNVRLAAKLTGYKVDLRETQAVS----------- 346 Query: 360 QFFMQAINVDEIIAHLLVAEG 380 ++D + L EG Sbjct: 347 -------DLDAAMQQALEDEG 360 >gi|298372250|ref|ZP_06982240.1| transcription termination factor NusA [Bacteroidetes oral taxon 274 str. F0058] gi|298275154|gb|EFI16705.1| transcription termination factor NusA [Bacteroidetes oral taxon 274 str. F0058] Length = 417 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 122/423 (28%), Positives = 224/423 (52%), Gaps = 9/423 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M +++ + K+ID +LS++ ++ +K ++YG+ + NP+ GD Sbjct: 1 MAKKEHSDIISSFAELKEFKNIDNSTMLSILEEAFRKVISNIYGSDQNYDFIFNPDKGDF 60 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VVE+ VE+ +ISL AR ++G V + + FGR AV + Q++ Sbjct: 61 EIWRNRIVVEDDKVEDPHLEISLSDARKIADDYEVGEEVQEQVDINSFGRRAVLNLSQIL 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ + ++D Y ++ +G+IIS V +V +++ D N++ ++ + + + + + Sbjct: 121 SAKIVDVQKDSLYTKYSQLLGQIISAEVYQVWKKEILLLDDNNNEILLPKADQLPNDFFK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ +++ + V P++ +SRT P F+ +L EVPEI +G++ +K + R PG +A Sbjct: 181 KGEIIRAVVARVDNNNNNPKIYVSRTLPLFLERLLEREVPEIQDGLITIKKIVRLPGEKA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG+RG+R+Q ++ EL E ID++ ++ + + ++ AL PA VT Sbjct: 241 KIAVESYDDRIDPVGACVGIRGNRIQPIIRELNKESIDVINYTSNPSLYIARALAPAKVT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+D + R V + E +S AIG+ G N++LA QLTG+ I+II + + Sbjct: 301 SIVIDNENKRANVYINPEDISSAIGKNGANIKLAIQLTGYHIEIIR----GDVEIDEEDI 356 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F +DE + +L G +++ + E+ +EET + + Sbjct: 357 FLDDFAD--EIDEWVIDILKNIGCDTAKQVLRLTREELIERTDLEEETVDYVIKVLKTEF 414 Query: 418 EGI 420 E Sbjct: 415 EKD 417 >gi|116490510|ref|YP_810054.1| transcription elongation factor [Oenococcus oeni PSU-1] gi|290889910|ref|ZP_06552997.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429] gi|116091235|gb|ABJ56389.1| Transcription elongation factor [Oenococcus oeni PSU-1] gi|290480520|gb|EFD89157.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429] Length = 473 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 129/353 (36%), Positives = 207/353 (58%), Gaps = 5/353 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE + Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +L ++ EV+ + + + +I LK AR+ + + + G + + P DFGR+A QS K Sbjct: 61 NLLQIKEVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKS 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLR 177 Q +RE E++ + ++ EI+S V R + + V + + + + I E + Sbjct: 121 TQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYK 180 Query: 178 PGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G R Sbjct: 181 TGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV ++DS++DP+G VG RGSRVQAVV EL E +DIV W D A ++ NAL PA V Sbjct: 241 SKVAVRTTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEV 300 Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E + Sbjct: 301 VDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAE 353 >gi|256827233|ref|YP_003151192.1| transcription termination factor NusA [Cryptobacterium curtum DSM 15641] gi|256583376|gb|ACU94510.1| transcription termination factor NusA [Cryptobacterium curtum DSM 15641] Length = 402 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 36/368 (9%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+A+E+ ID ++ + S+ K+ +++ D RV I+ TG I ++ E Sbjct: 5 ELIEALHALAHERKIDEFYLIERLEASLAKSYQNILDLEWDARVTIDRNTGKIYVY---E 61 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V + E + + + + P D R+A Q+AK VI VREA R Sbjct: 62 LVPQGE-PDPE-----------TGEYTDFEERDVTPDDVSRIAAQNAKGVINAIVREAGR 109 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 Y EF +VG++++GTV + I+ + + + R+E + E Sbjct: 110 QSIYEEFSQRVGDLVTGTVLQGTPDFTIIKIRDGVEAELPHYDQKRFPDERNERPANERY 169 Query: 177 RPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R R+K+ I +VR EQ P +++SRTHP + +LF +EVPEIY+G+V++ Sbjct: 170 RHNQRLKTLIIEVRNPNSEESRQRGEQARPSIVVSRTHPDLIRRLFEIEVPEIYDGVVEI 229 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG+R+K+AV S ++ +DPVGACVG +GSRV+ VV ELR+E++D++ WS D+AT+ Sbjct: 230 KSIAREPGARSKVAVVSHENHLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDAATY 289 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V NAL PA V+ V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 290 VRNALSPARVSHVDIDEETHYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSSSF 349 Query: 347 DSINRQKD 354 + Sbjct: 350 AGEPVVSE 357 >gi|320531905|ref|ZP_08032815.1| transcription termination factor NusA [Actinomyces sp. oral taxon 171 str. F0337] gi|320135874|gb|EFW27912.1| transcription termination factor NusA [Actinomyces sp. oral taxon 171 str. F0337] Length = 346 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 193/354 (54%), Gaps = 28/354 (7%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N EL AD + ID D +L + D+I A + G + VEI+ TG +S Sbjct: 1 MDINMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMS 56 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + A + D G D P DFGR+A +A+ VI+Q+ Sbjct: 57 VL--------------------APEVDDDDQPTGEYFDD-TPDDFGRIAQATARSVIVQR 95 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 +++ FKDK GE+ISGTV++ + V V L +G++ E + E R G Sbjct: 96 IQDRRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPAERYRHG 155 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+ Sbjct: 156 DRVRAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKM 215 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V Sbjct: 216 AVRSKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAV 275 Query: 300 -VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V+D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 276 GVIDAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITP 329 >gi|239621506|ref|ZP_04664537.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454835|ref|YP_003661979.1| NusA antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|239515381|gb|EEQ55248.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184267|gb|ADH01149.1| NusA antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 355 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 197/337 (58%), Gaps = 17/337 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE Sbjct: 8 IHKLAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEP 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 E+ P+ +G D P DFGR+A +A+QVI Q R AE ++ + Sbjct: 68 TEDNPY-----------PAPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVF 114 Query: 132 LEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 F + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 115 GAFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNV 174 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++ Sbjct: 175 ARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVN 234 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P GA +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 235 PKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTA 294 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 295 IAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|225619365|ref|YP_002720591.1| transcription elongation factor NusA [Brachyspira hyodysenteriae WA1] gi|225214184|gb|ACN82918.1| putative transcription elongation factor NusA [Brachyspira hyodysenteriae WA1] Length = 496 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 129/448 (28%), Positives = 243/448 (54%), Gaps = 35/448 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 ++ EK I +++ V+A +++ A + YG + + + + ++++ VVEEV Sbjct: 9 LQQLSDEKDISVELLKEVIASTMELALKKKYGDDIKFHIHFDNKN-NPTVYKGASVVEEV 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQY 131 N +ISL+ A+ D I++G V + ++ FGR+ A+ QK+ E E++ Y Sbjct: 68 RNKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESTVARTAFFQKISELEKNIIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR- 190 EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YIY V+ Sbjct: 128 NEFKRRENQLVNGYFQREHRGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYIYKVQG 187 Query: 191 -REQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++++G ++LL+RT P F+ KLF +E+PEI +G +++K V R PG + K+AV S+ Sbjct: 188 GKDEKGKEIHTKILLTRTKPDFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVAVASNK 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++++ D + Sbjct: 248 PEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRIIITDPE 307 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE------------------ 346 +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE + Sbjct: 308 KKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIVPLNQIF 367 Query: 347 ----DSINRQKDFNERTQFFMQAI----NVDEIIAHLLVAEGFADVEELACVKISEIASI 398 + + + E + F + +DE I L+ +EEL + + +I Sbjct: 368 SDNTEEVQAADEELETAEVFESNLYSLQGIDEAIIKTLIDNNINSIEELYNMSVEDIMEK 427 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQK 426 + + + ++ +E ++ + + Sbjct: 428 TNLERDIVDNLMLVMKDVVEVVEASDDE 455 >gi|120434526|ref|YP_956870.1| transcription elongation factor NusA [Gramella forsetii KT0803] gi|117576676|emb|CAL65145.1| transcription elongation protein [Gramella forsetii KT0803] Length = 410 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 133/417 (31%), Positives = 230/417 (55%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR +++++ D + A + YG + + +NP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K+ Sbjct: 63 RIVVADGEVEDDNREISLAQARKIEPDFEVGEDVSEEVKLVDLGRRAILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GEI + V + + +I+ D ++ V+ +D I + R G+ V Sbjct: 123 EHDNTNIYKQFKDLEGEIYTAEVHHIRHRAIILLDDEGNEIVLPKDRQIPSDFFRKGENV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P F+ KLF E+PE+++G++ +K V R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPTIIMSRTAPGFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T + +D Sbjct: 243 SYDDRIDPVGACVGMKGSRIHSIVRELGNENIDVINFTNNEQLFITRALSPAKITSIKMD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ EV++ E++S AIGR G N+RLA QLTG+ ID+ E + K+F + Sbjct: 303 EEARTAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELKEFTD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + ++++ +EET ++ R E Sbjct: 358 ----EIEDWVIAEFSKIGLDTAKAVLEQDVNDLVRRTDLEEETIKDVMAVLRSEFEE 410 >gi|213693052|ref|YP_002323638.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524513|gb|ACJ53260.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459229|dbj|BAJ69850.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 196/337 (58%), Gaps = 17/337 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71 +A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE Sbjct: 8 IHKLAAEQGIDPGTLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEP 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 E+ P+ +G D P DFGR+A +A+QVI Q R AE ++ + Sbjct: 68 TEDNPH-----------PAPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVF 114 Query: 132 LEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 F + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 115 GAFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNV 174 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++ Sbjct: 175 ARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVN 234 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P GA +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 235 PKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTA 294 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 295 IAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|24213642|ref|NP_711123.1| transcription elongation factor NusA [Leptospira interrogans serovar Lai str. 56601] gi|45658541|ref|YP_002627.1| transcription elongation factor NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194444|gb|AAN48141.1| transcription elongation factor NusA [Leptospira interrogans serovar Lai str. 56601] gi|45601784|gb|AAS71264.1| NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 460 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 145/447 (32%), Positives = 229/447 (51%), Gaps = 34/447 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--------IRVEINPETGDI 60 LL+ +KS+DR+ V+ V+ DS+ A + G + VE + Sbjct: 12 LLEAIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEESSELEKPSPVTVEFASGKDSV 71 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + +VV + +ISL+ A+ D S +IG V+S P++ R+ AKQ++ Q Sbjct: 72 VIAIAKKVVSGNPSSALEISLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQMVFQ 131 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++++ E++ + E+K K GE+ G +R + + +DLG +G++ R E E GD Sbjct: 132 RLKDMEKELLFNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYHSGD 191 Query: 181 RVKSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+K+ I V R P + LSR F+ KLF ME+PEIY+G+V++ V+R P R K Sbjct: 192 RLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSIRTK 251 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA + Sbjct: 252 VVVRATRGDIDPVGACVGMKGVRIQSIVRELGNERIDIVESSDDASEFIANAISPAKPVE 311 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR--QKDFN 356 V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T + + + Sbjct: 312 VKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVTQYNAELASPEARE 371 Query: 357 ERTQFFMQ----------------------AINVDEIIAHLLVAEGFADVEELACVKISE 394 + F + I +L +EG D+E L + Sbjct: 372 RLERLFYSPVEETKVSMEQEEEEELTPLEDLPGLSARIVGILKSEGIKDLETLIEYSQDD 431 Query: 395 IASIEGFDEETAVEIQGRAREYLEGID 421 +A ++G TA +I RE +E ++ Sbjct: 432 LAKLQGIGHTTAGQILKLLRESVEWVE 458 >gi|332295450|ref|YP_004437373.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796] gi|332178553|gb|AEE14242.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 340 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 132/337 (39%), Positives = 217/337 (64%), Gaps = 2/337 (0%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + + + EK + ++S + ++ + + Y ++ ++I P+TG + + VV Sbjct: 5 LHVLEQLEKEKGVSLPAMISALESALLASYKKYY-PSKNVSLKIIPDTGVLEIVVKKTVV 63 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++V N +ISL AR+ DP ++IG + + P +FGR+A +AKQV QK++EAERD Sbjct: 64 DKVNNIFDEISLTQAREIDPKVNIGETIEIQVDPKNFGRIAALTAKQVWQQKIKEAERDA 123 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + EFKD+V +ISG + R E N IV LG ++G++ + ET+ ++ +R Y+ V Sbjct: 124 VFEEFKDRVFGVISGKILRPEGKNWIVQLGRAEGILPQKETVFQDKYNINERYVFYVLSV 183 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 +++++ +++LSR+HP + ++F +E EI +GIV++ +++RDPGSR K+AV S D +D Sbjct: 184 KKQKKDVEIILSRSHPNLVKRIFELESAEIRSGIVEIVSIARDPGSRTKIAVLSRDPHVD 243 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P+G C+G+R SR+Q V ELR EKID+++++PD ++ +AL PA + +V +LD+ Sbjct: 244 PLGVCLGIRNSRIQNVTKELRGEKIDVILYNPDPKIYIASALSPAKIKRVEILDQVKKES 303 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V K QLSLAIG+ QNVRLA +LTG+ IDI EE Sbjct: 304 RVYVDKSQLSLAIGKDAQNVRLAHKLTGYKIDIKIEE 340 >gi|189440604|ref|YP_001955685.1| transcription elongation factor NusA [Bifidobacterium longum DJO10A] gi|189429039|gb|ACD99187.1| Transcription elongation factor [Bifidobacterium longum DJO10A] Length = 355 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 196/337 (58%), Gaps = 17/337 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE Sbjct: 8 IHKLAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEP 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 E+ P +G D P DFGR+A +A+QVI Q R AE ++ + Sbjct: 68 TEDNPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVF 114 Query: 132 LEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 F + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 115 GSFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNV 174 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++ Sbjct: 175 ARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVN 234 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P GA +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 235 PKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTA 294 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 295 IAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|227546511|ref|ZP_03976560.1| transcription elongation factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133908|ref|YP_004001247.1| nusa [Bifidobacterium longum subsp. longum BBMN68] gi|322689895|ref|YP_004209629.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis 157F] gi|322691836|ref|YP_004221406.1| transcription elongation factor NusA [Bifidobacterium longum subsp. longum JCM 1217] gi|227213060|gb|EEI80939.1| transcription elongation factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516439|emb|CBK70055.1| transcription termination factor NusA [Bifidobacterium longum subsp. longum F8] gi|311773202|gb|ADQ02690.1| NusA [Bifidobacterium longum subsp. longum BBMN68] gi|320456692|dbj|BAJ67314.1| transcription elongation factor NusA [Bifidobacterium longum subsp. longum JCM 1217] gi|320461231|dbj|BAJ71851.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 196/337 (58%), Gaps = 17/337 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE Sbjct: 8 IHKLAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEP 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 E+ P +G D P DFGR+A +A+QVI Q R AE ++ + Sbjct: 68 TEDNPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVF 114 Query: 132 LEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 F + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 115 GAFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNV 174 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++ Sbjct: 175 ARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVN 234 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P GA +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 235 PKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTA 294 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 295 IAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|89889478|ref|ZP_01200989.1| transcription termination factor NusA [Flavobacteria bacterium BBFL7] gi|89517751|gb|EAS20407.1| transcription termination factor NusA [Flavobacteria bacterium BBFL7] Length = 412 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 129/420 (30%), Positives = 232/420 (55%), Gaps = 12/420 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ L L++ +K IDR +++++ D + A + YG + + INP+ GD+ Sbjct: 1 MNMENLALIESFSEFKDDKMIDRVTLMAILEDVFRSALKRKYGDDDNFDIIINPDKGDLE 60 Query: 62 LFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++R VV EVE+ +I L AR +P ++G V++ + + GR A+ + +Q +I Sbjct: 61 IWRNRVVVADGEVEDDNSEIELTAARKIEPDYEVGEDVAEEVKLIQLGRRAILALRQNLI 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRP 178 K+ E + Y +FK+ GE+ S V + + +I+ D ++ ++ +D I + R Sbjct: 121 AKIHEHDNTNIYKQFKELEGELYSAEVHHIRHRAIILLDDEGNEIIMPKDRQIGSDFFRK 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G+ V+ I V P ++LSRT P+F+ KLF E+PE+++G++ VKAV R+PG +AK Sbjct: 181 GENVRGIIESVELRGNKPNIILSRTSPKFLEKLFEQEIPEVFDGLITVKAVVREPGEKAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ ++ ++ AL PA + Sbjct: 241 VAVDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTSNTQLYIARALSPAKIIS 300 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + ++E+ + EV + E++S AIGRRG N+RLA +LTG+ ID+I + + +F++ Sbjct: 301 MEINEETKKAEVRLNPEEVSKAIGRRGHNIRLAGKLTGYDIDVIRDGAEEDVELTEFSD- 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ I G + + I+++ +EET + + + E Sbjct: 360 --------EIEPWIIEEFSKIGLDTAKSILEQDIADLVKRTDLEEETVIAVVTILKSEFE 411 >gi|169334799|ref|ZP_02861992.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM 17244] gi|169257537|gb|EDS71503.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM 17244] Length = 394 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 138/365 (37%), Positives = 216/365 (59%), Gaps = 21/365 (5%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 + ++ D + K ID++ ++ + ++ A + T D+ V IN +G I F Sbjct: 14 KDFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSK 73 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 ++VEEVE+ +ISL A D S +G + + P FGR+A Q+AKQ+IIQK++E+E Sbjct: 74 QIVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESE 133 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGN----------------VIVDLGNSDGVIRRDET 170 R+ F K E+++G ++R EY + +DLG ++G++ Sbjct: 134 RNIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGKAEGIMNSQNQ 193 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 + E+ PG R+K Y+ DV +GPQ++LSRTHP + +LF EV EI +GIV++K++S Sbjct: 194 VRSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSIS 253 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R+ GSR+K+AV+++D IDPVG C+G +G R+Q V+ E+ DEKIDI+ +S D ++ NA Sbjct: 254 REAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKNA 313 Query: 291 LRPAIVTKVVL-----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 L PA V +V + ++ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ Sbjct: 314 LAPADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDIKSKS 373 Query: 346 EDSIN 350 Sbjct: 374 SVQEE 378 >gi|210634027|ref|ZP_03297945.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279] gi|210158971|gb|EEA89942.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279] Length = 427 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 135/395 (34%), Positives = 213/395 (53%), Gaps = 39/395 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M A+ +++ + EK ID+ +L + ++ + + +V I+ +G I Sbjct: 1 MADADMT-MMEALMLLCQEKHIDQLYLLDRLEAALAETYAKVLKLDWGAKVTIDRASGKI 59 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++RL E +++ D + + P D R+A Q+AK I Sbjct: 60 YVYRL----EPIDDS-----------MDEEGNFTEYEEIDVTPKDVSRLAAQTAKAEINA 104 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDE 169 VR A R++ Y EF +VG++I+GTV + IV + + + R+E Sbjct: 105 IVRNAAREQIYEEFSGRVGDLINGTVLQSTPDFTIVKIRDGVEAELPHFDQRRYPDERNE 164 Query: 170 TISRENLRPGDRVKSYIYDVRREQ------RG----PQVLLSRTHPQFMVKLFHMEVPEI 219 + E +K+ I DVR RG P +++SRTH + M +LF EVPE+ Sbjct: 165 RPNGERYLHNQHLKAVIVDVRDPNSTLPPVRGEHSRPPIVISRTHAELMRRLFEQEVPEV 224 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 Y G V++K+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W Sbjct: 225 YEGTVELKSIAREPGMRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILW 284 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A +V NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW I Sbjct: 285 DEDPAVYVANALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHI 344 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 DI +E + + K+ + ++ + +DE A Sbjct: 345 DIKSET-LAADILKNVPLAPEPAVEDL-LDEDTAD 377 >gi|300774925|ref|ZP_07084788.1| transcription termination factor NusA [Chryseobacterium gleum ATCC 35910] gi|300506740|gb|EFK37875.1| transcription termination factor NusA [Chryseobacterium gleum ATCC 35910] Length = 411 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 126/418 (30%), Positives = 230/418 (55%), Gaps = 13/418 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + + L++ EK I + +++++ DS++ R + + V +NP+ GD +F Sbjct: 2 DNIALIESFGDFKDEKGISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFL 61 Query: 65 LLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+ E+ +I + A+ DP+ ++G + +P GR + + KQ++ K+ Sbjct: 62 NKTIVEDEMSEDDDLEIEISEAKKIDPTFEVGEDFTMEIPVAQLGRRNILTLKQILATKL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 +E Y +F+DK+GEI+ G + + + +VI+ D ++ ++ ++ I + + G+ Sbjct: 122 QEHNNAMLYEQFRDKIGEIVVGEIHHIRHKHVILLDDEGNEFILPKENQIPSDFFKKGEN 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+AV Sbjct: 182 IRAIVETVDFKGSKPQIIISRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+ + Sbjct: 242 DAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKIEI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE-EEDSINRQKDFNERTQ 360 +E+ V P E++S IG++GQN+RLAS LTG+ ID+ E ED K+FN+ Sbjct: 302 NEETNYALVYTPVEEISKVIGKQGQNIRLASWLTGYEIDVYRESSEDDDVELKEFND--- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++++ I G + + + + ++ +EET E++ RE E Sbjct: 359 ------DIEQWILDEFKKVGLTTAKSVLDKETESLLNMVDLEEETIEEVKRILREEFE 410 >gi|42526617|ref|NP_971715.1| transcription elongation factor NusA [Treponema denticola ATCC 35405] gi|41816810|gb|AAS11596.1| N utilization substance protein A, putative [Treponema denticola ATCC 35405] Length = 495 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 149/487 (30%), Positives = 244/487 (50%), Gaps = 39/487 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ A EK ID D VL ++ +++ + + +GT ++ N ETG ++ + Sbjct: 5 IIEAIREFAQEKGIDDDFVLHIVEQALKASYKKQFGTDANAV--FNEETG--KIYSKKII 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E+ +N ISL+ A+ PS + G + + P G +V+ Q IQ +RE ++D Sbjct: 61 TEDAKNPVFDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIREMQKD 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG------DRV 182 Y E+ KVGEII G R GN+ VDLG +G++ + ++ R+ Sbjct: 121 TLYAEYSTKVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQCPGDHFGRNAAAGEESRI 180 Query: 183 KSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 K+ + +V+ R+ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+A Sbjct: 181 KALVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 V + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V Sbjct: 241 VSTDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVM 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE------------- 346 +LD + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ Sbjct: 301 ILDAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQFKQMDIYTDARKA 360 Query: 347 ------DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 D + + + E + + E I +L D+++L ++ EI ++EG Sbjct: 361 VENLFTDETSDEDEEYEEISNVAELPGITEDILTVLRNNEIEDIQDLINMEDDEIRALEG 420 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGV-SEELCSIPGIDSKIKVALGENGIKTM 459 E A + +E ++ + E S++ + E G K Sbjct: 421 LTTEMADTLLDIIANAVEVVEDDGDESDEESEPVSDDEGEVEE------FECPECGHKIT 474 Query: 460 EDLAGCS 466 D+ C Sbjct: 475 TDMTKCP 481 >gi|23466164|ref|NP_696767.1| transcription elongation factor NusA [Bifidobacterium longum NCC2705] gi|317482183|ref|ZP_07941206.1| transcription termination factor NusA [Bifidobacterium sp. 12_1_47BFAA] gi|23326902|gb|AAN25403.1| N utilization substance homolog [Bifidobacterium longum NCC2705] gi|316916417|gb|EFV37816.1| transcription termination factor NusA [Bifidobacterium sp. 12_1_47BFAA] Length = 355 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 195/337 (57%), Gaps = 17/337 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71 +A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE Sbjct: 8 IHKLAAEQGIDPGTLDDALAEALRLAYLKTPHAARHARVELDERSGNFTVWAADEIPVEP 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 E+ P +G D P DFGR+A +A+QVI Q R AE ++ + Sbjct: 68 TEDNPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVF 114 Query: 132 LEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 F + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 115 GAFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNV 174 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++ Sbjct: 175 ARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVN 234 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRI 308 P GA +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 235 PKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTA 294 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 295 IAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 331 >gi|86140762|ref|ZP_01059321.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis MED217] gi|85832704|gb|EAQ51153.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis MED217] Length = 409 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 128/416 (30%), Positives = 231/416 (55%), Gaps = 12/416 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L++ +K IDR ++++++ + + + +G+ + + INP+ GD+ ++R Sbjct: 3 NIALIESFSEFKDDKLIDRVMLMAILEEVFRSTLKKRFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K+ Sbjct: 63 RVVVADGEVEDENSEISLTEARRIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FKD GE+ + V + + +I+ D ++ ++ +D+ I + R G+ V Sbjct: 123 EHDNTNIYKQFKDLEGELYNAEVHHIRHRAIILLDDEGNEIIMPKDKQIPSDFFRKGENV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGIIESVELKGNKPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKKVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + +D Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINFTNNLQLYITRALSPAKITSIKID 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ++ EV++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 DENKTAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +++ I G + + + ++ +EET ++ RE E Sbjct: 358 ----EIEDWIIAEFSKIGLDTAKSILEQDVEDLVRRTDLEEETIADVMRILREEFE 409 >gi|119025371|ref|YP_909216.1| transcription elongation factor NusA [Bifidobacterium adolescentis ATCC 15703] gi|154486780|ref|ZP_02028187.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis L2-32] gi|118764955|dbj|BAF39134.1| N utilization substance homolog [Bifidobacterium adolescentis ATCC 15703] gi|154084643|gb|EDN83688.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis L2-32] Length = 350 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 119/346 (34%), Positives = 198/346 (57%), Gaps = 15/346 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A + ID + + + ++++++ A RVE++P G +++ E+ E Sbjct: 10 QLAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPGEPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 70 D----------DPHPAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 LKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + +QLSLAIG+ GQN RLA++LTGW I I + E + + + Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMAESADH 343 >gi|281414299|ref|ZP_06246041.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] gi|289705159|ref|ZP_06501562.1| transcription termination factor NusA [Micrococcus luteus SK58] gi|289558103|gb|EFD51391.1| transcription termination factor NusA [Micrococcus luteus SK58] Length = 328 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 124/334 (37%), Positives = 188/334 (56%), Gaps = 24/334 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D ++ + ++ A G + RVEI+ TG ++++ Sbjct: 5 MSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D G D P FGRVA +A+QV+IQ++RE + D+ Sbjct: 59 --------------ATELDEDDTPIGEFDD--TPNGFGRVAASTARQVMIQRMREEDDDK 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKDK GE++SG +++ + V V+LG + V+ E + E+ G R+++Y+ Sbjct: 103 VLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + Sbjct: 163 ATRGAKGPSVTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GA +G GSRV+AV+TEL DEKIDI+ D A + NAL PA V +LD D Sbjct: 223 NAKGASIGEMGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +VP+ QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 283 ARAVVPQYQLSLAIGKEGQNARLAAKLTGWRIDI 316 >gi|325971224|ref|YP_004247415.1| NusA antitermination factor [Spirochaeta sp. Buddy] gi|324026462|gb|ADY13221.1| NusA antitermination factor [Spirochaeta sp. Buddy] Length = 497 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 142/500 (28%), Positives = 255/500 (51%), Gaps = 46/500 (9%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ ++ EK+I ++V+S + D ++ A + +GT + +E + + + L + Sbjct: 4 EIGDAIRSMVAEKNISEELVISTIEDILRAAYKRKFGTDENAVIEFSEDFLSVELASRRK 63 Query: 68 VVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V++ N +I L A++ +IG + P+ DF R++VQSAKQ Q R+ Sbjct: 64 IVDDDNWYNEVTEIPLSEAKEIHEDCEIGDELLIPVDLKDFDRISVQSAKQRAHQSFRDI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++D Y E+K K G++I G +R G++ VD+G ++G++ R SRE+ D++K Sbjct: 124 QKDTLYSEYKAKEGQLIIGYYRRQLPNGDIYVDIGTTEGLLPRRNQSSRESYGSNDKIKC 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +RG +V+LSRT P + KLF +EVPEI + + + R+ G R K+AV S Sbjct: 184 YVEKVEKAERGLRVVLSRTSPDLIRKLFEVEVPEIAQNQIDIIKIVREAGYRTKVAVASR 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 + IDPVGACVG++G+R+Q +++E+ EKIDI+ + + ++ NAL PA V VV+ D+ Sbjct: 244 NDDIDPVGACVGLKGNRIQTIMSEIEGEKIDILRYDTNPVNYIRNALSPAQVKDVVVLDK 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFF 362 ++ IV QLSLAIG++G NVRLA++L W ID+ T+ + D ++ K+ + + F Sbjct: 304 NIYHAVAIVEDTQLSLAIGKQGLNVRLANKLVDWMIDVKTQSQFDEMDIAKEARFKAESF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 F E + + ++ E ++ Sbjct: 364 ------------------FGTGEPVFEEALPQL--------------------EFENTEV 385 Query: 423 TLQKKIRELGVSEE--LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++ +E L +P +DS + L + + ++E+ S +DL G+ + Sbjct: 386 AVESEVETFVDEDEIALSELP-LDSMLLKKLQFHDVYSVEEFINLSDEDLTGFGDLSEEE 444 Query: 481 IEKFDGFLSSLGTPKDQVES 500 I ++ + E Sbjct: 445 IIAIKDTINEYVDIVEDEED 464 >gi|294786395|ref|ZP_06751649.1| transcription termination factor NusA [Parascardovia denticolens F0305] gi|294485228|gb|EFG32862.1| transcription termination factor NusA [Parascardovia denticolens F0305] Length = 372 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 119/351 (33%), Positives = 196/351 (55%), Gaps = 15/351 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + +A E+ ID + + + ++++++ A RVE++ G +++ E+ Sbjct: 5 IAAMHKLAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIP 64 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E A D P +G D P DFGR A A+QVI R+A D+ Sbjct: 65 QEPT----------AEDPHPRPALGEEYDD--TPEDFGRQAAYIARQVITALFRKAADDK 112 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + F + G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ Sbjct: 113 IFGAFAGQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVV 172 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ Sbjct: 173 SVNRGLKGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQG 232 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++P GA +G G RV+AV+ L DEKIDIV WS D A FV AL PA KV V+ E Sbjct: 233 VNPKGALIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNK 292 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ++ +Q+SLAIG+ GQN RLA++LTGW I I + E+ + K E Sbjct: 293 TTLALIHDDQMSLAIGKEGQNARLAAKLTGWKIAIDSYEKSKAEQAKKAQE 343 >gi|238916823|ref|YP_002930340.1| N utilization substance protein A [Eubacterium eligens ATCC 27750] gi|238872183|gb|ACR71893.1| N utilization substance protein A [Eubacterium eligens ATCC 27750] Length = 381 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/380 (36%), Positives = 230/380 (60%), Gaps = 14/380 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ E ID++++ + + S+ ++ + + RVE++ TGD ++ Sbjct: 2 NKELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYSD 61 Query: 66 LEVVEEVENYT------------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 VVEEV I+L+ AR P +G V++ + +F R A ++ Sbjct: 62 RTVVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAKN 121 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETIS 172 AK I+Q +RE E++ Y E+ K E+I+G V+RV + G++ +DLG V++ D+ Sbjct: 122 AKNTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGRLQTVLKADDKFK 181 Query: 173 RENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 + PGDR+K Y+ DV RE+ GP V +SR + + KLF EV EI +G+V++ ++R Sbjct: 182 DKKFVPGDRIKLYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIMGIAR 241 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + GSR K+AV ++ +++DPVGACVG+ G+RV+A+V EL +E+IDI+ W +SA ++NAL Sbjct: 242 EAGSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLIVNAL 301 Query: 292 RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 PA V V D++ + +++V ++QLSLAIG++GQNVRLA++LTG+ IDI +E E + Sbjct: 302 SPAKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDIKSEAEPEEHT 361 Query: 352 QKDFNERTQFFMQAINVDEI 371 +++ E +++DE Sbjct: 362 EEENLEEEYVEPSELSLDEE 381 >gi|228470366|ref|ZP_04055269.1| transcription termination factor NusA [Porphyromonas uenonis 60-3] gi|228307948|gb|EEK16831.1| transcription termination factor NusA [Porphyromonas uenonis 60-3] Length = 459 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 136/455 (29%), Positives = 241/455 (52%), Gaps = 28/455 (6%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYSEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V +V ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGEMITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA V+ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTSNDSLFIQRALSPAKVSSIELYPETAKAEVYLQPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + LAIG+ N++LAS LTG+ I++ + D+ + + F +++ + +L Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADT----TEEDIYLSEFSD--EIEDWVIKML 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + G + +E+ + ET + +R L + Sbjct: 375 LDIGLNTARAVLTTSRTELLQKTDLEIETIDHV------------------LRILSSEFD 416 Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDL 470 L + + + + L ++ + T ++A ++DL Sbjct: 417 LEELEEMGLPQENIDLIKSPVPTQSEIAEAIIEDL 451 >gi|269215361|ref|ZP_06159215.1| transcription termination factor NusA [Slackia exigua ATCC 700122] gi|269131217|gb|EEZ62291.1| transcription termination factor NusA [Slackia exigua ATCC 700122] Length = 395 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 206/365 (56%), Gaps = 36/365 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+A+E+ ID ++ + S+ K+ +++ + RV I+ TG I ++ L+ V Sbjct: 1 MDALQALAHERKIDEFYLIERLEASLAKSYQNILDLEWEARVTIDRSTGRIYVYELVPVG 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E + + + + P + R A Q+AK VI VREA R Sbjct: 61 E----PDPE-----------TGEYADFEEKDVTPANVSRTAAQNAKSVIAAIVREAGRQS 105 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR-------RDET--IS-RENLRP 178 Y EF+D+V +I+ GTV + I+ + + + DE + E R Sbjct: 106 IYEEFRDRVDDIVGGTVLQTTPDFTIIKIREGVEAELPHYDLKRFPDEQNEVPAGERYRH 165 Query: 179 GDRVKSYIYDVR------REQRG----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 R+K+ I +VR RG P +++SRTHP + +LF +EVPEIY+G+V++K+ Sbjct: 166 NQRIKTVIIEVRDPRSMEPRARGEQTRPSIVVSRTHPSLIRRLFEIEVPEIYDGVVEIKS 225 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 ++R+ G+R+K+AV S +S++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A +V Sbjct: 226 IAREAGARSKVAVASRESNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDPAKYVA 285 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 NAL PA VT+V +DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 286 NALSPARVTRVTIDEDKQYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSSSYAG 345 Query: 349 INRQK 353 + Sbjct: 346 QMVPE 350 >gi|315604477|ref|ZP_07879542.1| transcription termination factor NusA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313804|gb|EFU61856.1| transcription termination factor NusA [Actinomyces sp. oral taxon 180 str. F0310] Length = 342 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 126/344 (36%), Positives = 203/344 (59%), Gaps = 26/344 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +++ D +P + P +FGR+A +A+ VI+Q++R+A Sbjct: 58 -------------MAMDEDEDGNPIGEFDD------TPKNFGRIAQATARSVIMQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G++I+GTV+ R ++ + + V+ E + E R GDR++ Sbjct: 99 DDQRVFGDFAGREGQVITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKTAGETYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV + Sbjct: 159 AYIVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVVA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+ Sbjct: 219 TRDGINAKGACIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D IVP QLSLAIG+ GQN RLA++LTG+ IDI + E Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTGFHIDIHADTE 322 >gi|183220911|ref|YP_001838907.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911007|ref|YP_001962562.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775683|gb|ABZ93984.1| Transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779333|gb|ABZ97631.1| N utilization substance protein A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 466 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 152/454 (33%), Positives = 236/454 (51%), Gaps = 40/454 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD----IRVEI-NPETGDISLF 63 L + +KS+DR++VL V+ DS+ A R G ++ +VE + +I + Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L +VV E ++SL+ A+ DP I++G + P D RV AKQ++ Q++R Sbjct: 72 VLRDVVAEKTINPLEVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRLR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + E++ Y E+K K GE+ G +R + + +DLG +G++ + + E R GDR+K Sbjct: 132 DMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGKVEGIMLKKDQNPGEKYRQGDRLK 191 Query: 184 SYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + I V R P + LSR F+ KLF ME+PE+Y+GIV+++ V+R P R K+ V Sbjct: 192 AIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKVVV 251 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S S +DPVGACVGM+G R+QA+V EL +E+IDIV+ S + + F+ NA+ PA +V + Sbjct: 252 TTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEVHV 311 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI------------ 349 D G VIVP E LSLAIG G NV+L SQL+G+ IDI T + + Sbjct: 312 DRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTVSQYNQELASPEAREKLD 371 Query: 350 ---------------------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 +++ + + + I LL A G +VE L Sbjct: 372 RLFNAQQEAMEESEDGYNQSGQDEEEEDSGFTPLSEIPGLTPRIVGLLEAGGIKNVETLL 431 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 E++ I G + TA +I RE +E ++ Sbjct: 432 EFSQEELSKISGIGKTTAEQILRLLRESIEWVEE 465 >gi|320094043|ref|ZP_08025865.1| transcription termination factor NusA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979022|gb|EFW10543.1| transcription termination factor NusA [Actinomyces sp. oral taxon 178 str. F0338] Length = 342 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 128/340 (37%), Positives = 205/340 (60%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + V EK + D ++ + +++ KA ++ G +S+ R+EI+ +TG +++ V Sbjct: 5 MTALRMVETEKGVSLDTLVDAIEEALLKAYHNIPGAISEARIEIDKKTGRVTVMA----V 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E E+ +P + P +FGR+A +A+ VI+ ++R+A+ R Sbjct: 61 DEDED------------GNPIGEFDD------TPKNFGRIAQATARSVIMARLRDADDQR 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDL-GNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +F + G+II+GTV++ G++ V + + + V+ E + E R GDR+++++ Sbjct: 103 VFGDFAGREGQIITGTVQQSRDGHLTRVQISDDFEAVLPDSEKVPGEAYRHGDRIRAFVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +RGP+V LSRTHP + LF EVPEI G+V+++A++R+ G R K+AV ++ Sbjct: 163 GVERTERGPRVTLSRTHPGLVECLFEREVPEIQQGLVRIRAIAREAGHRTKIAVAATREG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306 I+ GAC+G G+RV+AV+TEL EKIDIV +S D A FV NAL PA VT+VV+ D Sbjct: 223 INAKGACIGPVGARVRAVMTELGGEKIDIVDYSDDPARFVANALSPARVTRVVVHSVDNR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIG+ GQN RLA++LT + IDI ++ E Sbjct: 283 TATAIVPDFQLSLAIGKEGQNARLAARLTNFHIDIHSDTE 322 >gi|332292194|ref|YP_004430803.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5] gi|332170280|gb|AEE19535.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5] Length = 410 Score = 371 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 122/417 (29%), Positives = 222/417 (53%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +K IDR +++++ + + + +G+ + + INP+ GD+ ++R Sbjct: 3 NLALIDSFSEFKDDKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISL AR + ++G VS+ + D GR ++ + +Q +I K+ Sbjct: 63 RVVVADGEVEDDNEEISLTDARKIEEDFEVGEDVSEEVKLFDLGRRSILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FK+ GE+ + V + + +I +D ++ ++ +D I + R G+ V Sbjct: 123 EHDNTNIYKQFKELEGELYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGENV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGVIESVELKGNKPSIVMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + ++ Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIKIN 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + ++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 EENKTAQAVLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ + G + ++ +EET +++ + E Sbjct: 358 ----EIEAWVIEAFAKIGLDTARSVLEQDAEDLVRRTDLEEETVLDVMRILKAEFEE 410 >gi|296394257|ref|YP_003659141.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] gi|296181404|gb|ADG98310.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] Length = 342 Score = 371 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 138/357 (38%), Positives = 209/357 (58%), Gaps = 31/357 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q A+ EK + + ++ +A ++ A + G SD RV+I+ + G + + Sbjct: 5 VQTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHQSDARVDIDRKHGAVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD ++ G D P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 59 --------------VAERDEDGNLLGEYDD--TPDDFGRIATMTARQVILQRLRDAEGDQ 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNS----DGVIRRDETISRENLRPGDR 181 + + K G+I++G V+R E G IV +G+ +GV+ E + E+L GDR Sbjct: 103 GFADLPVKEGDIVAGVVQRDARANERGLQIVRMGSELKSYEGVLPVAEQVPGESLVHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI +G VQ+ AV+R+ G R+K+AV Sbjct: 163 VKCYVVSVKPGRRGPQITLSRTHPNLVRKLFALEVPEIGDGAVQIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA V Sbjct: 223 KSTVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALLTRV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 LD V + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ + Sbjct: 283 LDPVVKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARKAAADR 339 >gi|257068213|ref|YP_003154468.1| transcription termination factor NusA [Brachybacterium faecium DSM 4810] gi|256559031|gb|ACU84878.1| transcription termination factor NusA [Brachybacterium faecium DSM 4810] Length = 328 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 118/336 (35%), Positives = 195/336 (58%), Gaps = 24/336 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 A+ E+ I V+L + ++ A + D V I+ TG++++ Sbjct: 7 ALRALERERDIRLPVLLDAIRSALHAAYLHTDHPVRDSEVLIDESTGEVAV--------- 57 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 +AR+RD + D P +FGRVA +A+QVI Q++R+ E + Sbjct: 58 -----------IARERDADGVVVEEWDD--TPENFGRVAASTARQVIFQRIRDLEDEAVL 104 Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 E+ D+ +I+SG +++ + V+VDLG + V+ E + E+ G R+++Y+ + R Sbjct: 105 GEYADRADDIVSGIIQQGRDPRMVLVDLGEVEAVLPPHERVPGEDYSHGRRLRAYVTEAR 164 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +GPQ+ LSR+HP + +LF +EVPE+ +G V++ ++R+ G R K++V ++ ++ Sbjct: 165 RGPKGPQITLSRSHPNLVRRLFDLEVPEVADGTVEITGLAREAGHRTKMSVRATVPGVNA 224 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 G+C+G G+RV++V+ EL EKIDIV + D AT+V NAL P+ V+ V V+DE + Sbjct: 225 KGSCIGPMGARVRSVMNELGGEKIDIVDFDEDPATYVANALSPSKVSSVTVIDEVGRAVR 284 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +VP+ QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 285 AVVPETQLSLAIGKDGQNARLAAKLTGWKIDIRPDS 320 >gi|212716581|ref|ZP_03324709.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM 16992] gi|225351012|ref|ZP_03742035.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660285|gb|EEB20860.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM 16992] gi|225158468|gb|EEG71710.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 350 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 202/354 (57%), Gaps = 17/354 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73 +A + ID + + + ++++++ A RVE++P G +++ E+ VE E Sbjct: 10 QLAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPVEPTE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + P+ +G D P DFGR+A +A+QVI Q R+AE D+ + Sbjct: 70 DNPH-----------PAPTLGEEYDD--TPRDFGRLAAATARQVISQLFRKAEDDKVFGA 116 Query: 134 FKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 F + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 117 FSGQKGKLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVAR 176 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 177 GLKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPK 236 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEV 310 GA +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E Sbjct: 237 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNQTAIA 296 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + +QLSLAIG+ GQN RLA++LTGW I I + E + + ++ + Sbjct: 297 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMAEAQASTSEETAE 350 >gi|269219599|ref|ZP_06163453.1| transcription termination factor NusA [Actinomyces sp. oral taxon 848 str. F0332] gi|269210841|gb|EEZ77181.1| transcription termination factor NusA [Actinomyces sp. oral taxon 848 str. F0332] Length = 330 Score = 370 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 132/342 (38%), Positives = 199/342 (58%), Gaps = 26/342 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + V E I DV++ + D++ A + + G + RVE++ TG ++++ Sbjct: 5 MNELRIVESELGISVDVIVGAIEDALLHAYQRVPGAVRGARVEMDRNTGKVTVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D ++ G D P DFGR+A +A+ +I Q++R+AE DR Sbjct: 59 --------------APEVDEEGEVIGEFDD--TPGDFGRIATSTARSIIAQRLRDAETDR 102 Query: 130 QYLEFKDKVGEIISGTVK---RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 FK K GE++SG V+ R + +++VD+G + ++R +E + E R GD +++ + Sbjct: 103 VLGSFKGKQGEVVSGVVQQNPRHDSRDLLVDVGEHEAILRVEEQVPTERFRHGDHIRALV 162 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V RG V LSRTHP F KLF MEVPEI +G V++ A++R+ G RAK+AV+S Sbjct: 163 LEVSVGTRGASVRLSRTHPDFARKLFEMEVPEIQDGTVEIVALAREAGHRAKIAVWSDIP 222 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305 ++ GAC+G G RV+AV TEL EKIDIV + D F+ +L PA V +V +LD+ Sbjct: 223 DVNAKGACIGHNGQRVRAVTTELGGEKIDIVDYDDDPKAFIAASLSPAKVVRVDILDKAE 282 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + VIVP Q SLAIG+ QNVRLA++LTGW+IDI E +D Sbjct: 283 RQARVIVPDGQTSLAIGKEAQNVRLAAKLTGWSIDIRKESDD 324 >gi|325473159|gb|EGC76355.1| N utilization substance protein A [Treponema denticola F0402] Length = 495 Score = 370 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 149/487 (30%), Positives = 243/487 (49%), Gaps = 39/487 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ A EK ID D VL ++ +++ + + +GT ++ N ETG ++ + Sbjct: 5 IIEAIREFAQEKGIDDDFVLHIVEQALKASYKKQFGTDANAV--FNEETG--KIYSKKII 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E+ +N ISL+ A+ PS + G + + P G +V+ Q IQ ++E ++D Sbjct: 61 TEDAKNPVFDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIKEMQKD 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG------DRV 182 Y E+ KVGEII G R GN+ VDLG +G++ + ++ R+ Sbjct: 121 TLYAEYSTKVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQCPGDHFGRNAAAGEESRI 180 Query: 183 KSYIYDVR--REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 K+ + +V+ R+ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+A Sbjct: 181 KALVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 V + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V Sbjct: 241 VSTDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVM 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE------------- 346 +LD + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ Sbjct: 301 ILDAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQFKQMDIYTDARKA 360 Query: 347 ------DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 D + + + E + + E I +L D+++L ++ +EI ++EG Sbjct: 361 VENLFTDETSDEDEEYEEISNVSELPGITEDILAVLRNNEIEDIQDLINMEDNEIRALEG 420 Query: 401 FDEETAVEIQG-RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTM 459 E A + A D + VS++ + E G K Sbjct: 421 LTTEMADTLLDIIANAVEVVEDDEDESDEESEPVSDDEGEVEE------FECPECGHKIT 474 Query: 460 EDLAGCS 466 D+ C Sbjct: 475 TDMTKCP 481 >gi|116328714|ref|YP_798434.1| transcription elongation factor NusA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330628|ref|YP_800346.1| transcription elongation factor NusA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121458|gb|ABJ79501.1| Transcription elongation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124317|gb|ABJ75588.1| Transcription elongation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 462 Score = 370 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 147/449 (32%), Positives = 229/449 (51%), Gaps = 36/449 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----------IRVEINPET 57 LL++ +KS+DR+ V+ V+ DS+ A + G + VE Sbjct: 12 LLEVIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEGLEEFEESEKPSPVTVEFASGK 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + +VVE + +I L+ A+ D S +IG V+S P++ R+ AKQ+ Sbjct: 72 DSVVIAIAKKVVEGTPSSALEIGLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQM 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 + Q++++ E++ Y E+K K GE+ G +R + + +DLG +G++ R E E Sbjct: 132 VFQRLKDMEKELLYNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYH 191 Query: 178 PGDRVKSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 GDR+K+ I V R P + LSR F+ KLF ME+PEIY+G+V++ V+R P Sbjct: 192 SGDRLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSI 251 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R K+ V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA Sbjct: 252 RTKVVVRATRGEIDPVGACVGMKGVRIQSIVRELGNERIDIVEASDDASEFIANAISPAK 311 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----------- 344 +V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T Sbjct: 312 PVEVKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVAQYNAELASPE 371 Query: 345 ------------EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 E++ E + I +L +EG D+E L Sbjct: 372 ARERLERLFYSPAEEAKVAAPQEEEELTPLEDLPGLSARIVGILKSEGIKDLETLIEYSQ 431 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGID 421 ++A ++G TA +I RE +E ++ Sbjct: 432 DDLAKLQGIGHTTAGQILKLLRESVEWVE 460 >gi|160943264|ref|ZP_02090500.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii M21/2] gi|158445503|gb|EDP22506.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii M21/2] gi|295105168|emb|CBL02712.1| transcription termination factor NusA [Faecalibacterium prausnitzii SL3/3] Length = 368 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 144/352 (40%), Positives = 216/352 (61%), Gaps = 8/352 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59 M +AN+ + + + +E+ I + ++ + +I A + Y IRV+I+P+TG Sbjct: 1 MTAANK-DFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHIRVDIDPDTGR 59 Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + ++V E+ + +I + AR S ++G + PL DFGR+A Q+AK V Sbjct: 60 FDVALIQDIVADEDWYDEHAEIGVTEARKIRSSYEVGDRIITPLKTRDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRE 174 I Q +REAER++Q E + + +I+ TV RV E G V +DLG + V+ R+E + E Sbjct: 120 IRQGIREAERNQQLSEIQSRAHDIVQATVTRVDTEKGIVALDLGKGGEAVLPRNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G+ ++ YI DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G Sbjct: 180 VYTEGETLQVYIVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V KV L V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPES 351 >gi|311113215|ref|YP_003984437.1| transcription termination factor NusA [Rothia dentocariosa ATCC 17931] gi|310944709|gb|ADP41003.1| transcription termination factor NusA [Rothia dentocariosa ATCC 17931] Length = 349 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 210/363 (57%), Gaps = 26/363 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + A+A ++ + + + S++ +++ A G + R I+ TGD ++ Sbjct: 9 LGVLHALAKQRGLVLEELFSLVENALVLAYMKQPGAIKGSRAVIDRTTGDFAIL------ 62 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 63 --------------APELDDDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G + SG +++ V VDLG + V+ +E + E G R+++Y+ + Sbjct: 107 VLGEFKDREGTLASGVIQQGNNPRMVQVDLGTIEAVLPANEQVPGEQYPHGTRIRAYLLE 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR Q+GP ++LSR+HP +++LF EVPEI +G V++ +++R+ G R+K+AV +++ SI Sbjct: 167 ARRGQKGPSIVLSRSHPNLVLRLFEHEVPEIADGSVKINSIAREAGHRSKIAVSATNPSI 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D A F+ AL PA VT+V++ D Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPAEFITAALSPAKVTEVIIADPREYS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IVP EQLSLAIGR GQN RLA++LTGW IDI+ E + + R ++ E + ++++ Sbjct: 287 ARAIVPDEQLSLAIGREGQNARLAAKLTGWRIDILAESKYAQIRAEE--EVAERVARSLD 344 Query: 368 VDE 370 +DE Sbjct: 345 LDE 347 >gi|41409007|ref|NP_961843.1| transcription elongation factor NusA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397366|gb|AAS05226.1| NusA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 351 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 130/357 (36%), Positives = 198/357 (55%), Gaps = 31/357 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V + Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 283 IDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRP 339 >gi|291457236|ref|ZP_06596626.1| transcription termination factor NusA [Bifidobacterium breve DSM 20213] gi|291381071|gb|EFE88589.1| transcription termination factor NusA [Bifidobacterium breve DSM 20213] Length = 351 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 118/339 (34%), Positives = 197/339 (58%), Gaps = 17/339 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ G +++ ++ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERAGSFTVWAADDIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ ++G D P DFGR+A +A+QVI Q R+ E ++ + F Sbjct: 71 -----------DPHPAPELGEEYDD--TPHDFGRLAAATARQVITQLFRKVEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++++G +++ + NV V +G + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLVTGIIQQDASDPTNVHVAMGEVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R KLAV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKLAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPSGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + +QLSLAIG+ GQN RLA++LTGW I I + E + Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKK 336 >gi|171741240|ref|ZP_02917047.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC 27678] gi|283455398|ref|YP_003359962.1| N utilization substance protein A [Bifidobacterium dentium Bd1] gi|171276854|gb|EDT44515.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC 27678] gi|283102032|gb|ADB09138.1| nusA N utilization substance protein A [Bifidobacterium dentium Bd1] Length = 346 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 199/349 (57%), Gaps = 15/349 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A + ID + + + ++++++ A R+E++P G +++ E+ E Sbjct: 10 QLAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGEPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 70 E----------DPHPAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAF 117 Query: 135 KDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G V++ NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 LKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + +QLSLAIG+ GQN RLA++LTGW I I + E + Q+ E + Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMQESAGESAE 346 >gi|118462823|ref|YP_882872.1| transcription elongation factor NusA [Mycobacterium avium 104] gi|118164110|gb|ABK65007.1| transcription termination factor NusA [Mycobacterium avium 104] Length = 351 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 130/357 (36%), Positives = 198/357 (55%), Gaps = 31/357 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V + Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 283 IDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRP 339 >gi|332300247|ref|YP_004442168.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM 20707] gi|332177310|gb|AEE13000.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM 20707] Length = 469 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 131/424 (30%), Positives = 233/424 (54%), Gaps = 15/424 (3%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V +V ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + LAIG+ N++LAS LTG+ I++ + D+ + + F +++ + +L Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADT----TEEDIYLSEFSD--EIEDWVIKML 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + G + +E+ + ET + + + L++ + E+G+ +E Sbjct: 375 LDIGLNTARAVLTTSRTELLKKTDLELETIDRVLR-----ILSSEFDLEE-LEEMGLPQE 428 Query: 437 LCSI 440 + Sbjct: 429 NIDL 432 >gi|315225958|ref|ZP_07867746.1| transcription termination factor NusA [Parascardovia denticolens DSM 10105] gi|315120090|gb|EFT83222.1| transcription termination factor NusA [Parascardovia denticolens DSM 10105] Length = 385 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 119/351 (33%), Positives = 196/351 (55%), Gaps = 15/351 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + +A E+ ID + + + ++++++ A RVE++ G +++ E+ Sbjct: 18 IAAMHKLAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIP 77 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E A D P +G D P DFGR A A+QVI R+A D+ Sbjct: 78 QEPT----------AEDPHPRPALGEEYDD--TPEDFGRQAAYIARQVITALFRKAADDK 125 Query: 130 QYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + F + G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ Sbjct: 126 IFGAFAGQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVV 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ Sbjct: 186 SVNRGLKGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQG 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 ++P GA +G G RV+AV+ L DEKIDIV WS D A FV AL PA KV V+ E Sbjct: 246 VNPKGALIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNK 305 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ++ +Q+SLAIG+ GQN RLA++LTGW I I + E+ + K E Sbjct: 306 TTLALIHDDQMSLAIGKEGQNARLAAKLTGWKIAIDSYEKSKAEQAKKAQE 356 >gi|239917227|ref|YP_002956785.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] gi|239838434|gb|ACS30231.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] Length = 328 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 124/334 (37%), Positives = 187/334 (55%), Gaps = 24/334 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D ++ + ++ A G + RVEI+ TG ++ + Sbjct: 5 MSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTAW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D G D P FGRVA +A+QV+IQ++RE + D+ Sbjct: 59 --------------ATELDEDDTPIGEFDD--TPNGFGRVAASTARQVMIQRMREEDDDK 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKDK GE++SG +++ + V V+LG + V+ E + E+ G R+++Y+ Sbjct: 103 VLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + Sbjct: 163 ATRGAKGPSVTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GA +G GSRV+AV+TEL DEKIDI+ D A + NAL PA V +LD D Sbjct: 223 NAKGASIGEMGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +VP+ QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 283 ARAVVPQYQLSLAIGKEGQNARLAAKLTGWRIDI 316 >gi|300743965|ref|ZP_07072985.1| transcription termination factor NusA [Rothia dentocariosa M567] gi|300380326|gb|EFJ76889.1| transcription termination factor NusA [Rothia dentocariosa M567] Length = 345 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 210/363 (57%), Gaps = 26/363 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + A+A ++ + + + S++ +++ A G + R I+ TGD ++ Sbjct: 5 LGVLHALAKQRGLVLEELFSLVENALVLAYMKQPGAIKGSRAVIDRTTGDFAIL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 59 --------------APELDDDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G + SG +++ V VDLG + V+ +E + E G R+++Y+ + Sbjct: 103 VLGEFKDREGTLASGVIQQGNNPRMVQVDLGTIEAVLPANEQVPGEQYPHGTRIRAYLLE 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR Q+GP ++LSR+HP +++LF EVPEI +G V++ +++R+ G R+K+AV +++ SI Sbjct: 163 ARRGQKGPSIVLSRSHPNLVLRLFEHEVPEIADGSVKINSIAREAGHRSKIAVSATNPSI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D A F+ AL PA VT+V++ D Sbjct: 223 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPAEFITAALSPAKVTEVIIADPREYS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IVP EQLSLAIGR GQN RLA++LTGW IDI+ E + + R ++ E + ++++ Sbjct: 283 ARAIVPDEQLSLAIGREGQNARLAAKLTGWRIDILAESKYAQIRAEE--EVAERVARSLD 340 Query: 368 VDE 370 +DE Sbjct: 341 LDE 343 >gi|86131975|ref|ZP_01050571.1| transcription elongation protein NusA [Dokdonia donghaensis MED134] gi|85817309|gb|EAQ38489.1| transcription elongation protein NusA [Dokdonia donghaensis MED134] Length = 410 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 124/417 (29%), Positives = 227/417 (54%), Gaps = 12/417 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L L+ +K IDR +++++ + + + +G+ + + INP+ GD+ ++R Sbjct: 3 NLALIDSFSEFKDDKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIWRN 62 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EVE+ +ISL AR + ++G VS+ + +D GR ++ + +Q +I K+ Sbjct: 63 RVVVADGEVEDDNEEISLTDARKIEEDFEVGEDVSEEVKLIDLGRRSILALRQNLISKIH 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 E + Y +FK+ G++ + V + + +I +D ++ ++ +D I + R G+ V Sbjct: 123 EHDNTNIYKQFKELEGDLYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGENV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+AV Sbjct: 183 RGVIESVELKGNKPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVAVD 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + +D Sbjct: 243 SYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIKID 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + ++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 303 EENKTAQAVLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSD----- 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ + G + ++S++ +EET +++ +E E Sbjct: 358 ----EIEAWVIEAFGKIGLDTARSVLEQEVSDLVRRTDLEEETVLDVMRILKEEFEE 410 >gi|139436991|ref|ZP_01771151.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC 25986] gi|133776638|gb|EBA40458.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC 25986] Length = 415 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 131/359 (36%), Positives = 197/359 (54%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ + EK ID+ ++ + S+ K+ + +V I+ TG I ++RL Sbjct: 5 DMMSALMELCQEKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYRL-- 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 E +++ D + + P + R+A Q AK I VR + R Sbjct: 63 --EPIDDS-----------MDEEGNFTEFEEIDVTPKNTSRIAAQHAKAEINAIVRNSAR 109 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 ++ Y EF ++G++ISGTV + IV + + + R+E E Sbjct: 110 EQIYEEFSGRIGDLISGTVLQSTPDFTIVKIREGVEAELPHFDQRRYENERNERPMGERY 169 Query: 177 RPGDRVKSYIYDVRREQRG----------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 +K+ I DVR P +++SRTHP+ M +LF EVPEIY G VQ+ Sbjct: 170 LHNQHIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQI 229 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A + Sbjct: 230 KSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAVY 289 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 290 VANALSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 348 >gi|326335427|ref|ZP_08201614.1| N utilization substance protein A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692193|gb|EGD34145.1| N utilization substance protein A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 411 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 128/418 (30%), Positives = 229/418 (54%), Gaps = 12/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + + Y +FK+ +G I + + ++ VI+ D ++ ++ RD I + + G+ Sbjct: 123 HEYDNNTIYKKFKELIGGIYTAEIHHIKGKTVILLDDDGNEILLPRDRQIPSDFFKKGET 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+AV Sbjct: 183 IKGIIESVDFKGNKPAIILSRTSPLFLERLFEQEIPEIADGLITIQKVARIPGEKAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVG+ G+R++++V EL +E ID++ +S + + F+ AL PA +T + + Sbjct: 243 DSYDDRIDPVGACVGVNGARIRSIVRELGNENIDVINFSNNISLFISKALAPAKITSITV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E + +F + Sbjct: 303 NEETKRAEVLLASEEVSKAIGKGGSNIRLASMLTGYEIDVFREGAEEDIELSEFED---- 358 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ I G + + E+ + ET ++ +E E Sbjct: 359 -----EIEPWIIEEFRRIGLDTAKSVLEYSAEELEKRVDLELETIQDVLRILKEEFEN 411 >gi|325954923|ref|YP_004238583.1| NusA antitermination factor [Weeksella virosa DSM 16922] gi|323437541|gb|ADX68005.1| NusA antitermination factor [Weeksella virosa DSM 16922] Length = 411 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 132/417 (31%), Positives = 237/417 (56%), Gaps = 11/417 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L++ +K+IDR +++++ +++Q R YG+ + + +NP+ GD+ ++ Sbjct: 2 DNLALIESFGDFKDDKNIDRITLMAIIEEALQVVLRKKYGSDDNFDIIVNPDKGDLEIWH 61 Query: 65 LLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ E+ + +I L AR +P +IG VS+ +P + GR A+ + +Q + K+ Sbjct: 62 NRIVVEDGFSEDDSAEIELSEARKIEPDFEIGEEVSELIPIENLGRRAILTLRQTLSAKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDR 181 E + Y +FK+ GEI+SG V + + ++I +D ++ ++ ++ I + R G+ Sbjct: 122 MEHDNANLYDKFKELEGEIVSGEVHHIRHKHIIIMDDEQNEMILPKENQIPSDFFRKGET 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + +V PQ++LSRT P+F+ KLF E+PEI++G++ +K V R PG +AK+AV Sbjct: 182 VRAIVDEVVLRGAKPQIVLSRTAPKFLEKLFEQEIPEIFDGLITIKKVVRIPGEKAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVGM+GSR+ ++V ELR+E ID++ ++ + ++ AL PA ++ + Sbjct: 242 ESYDDRIDPVGACVGMKGSRIHSIVRELRNENIDVINYTTNLNLYIARALSPAKISSAEI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +I V V E++S AIG+ G NV+LAS+L IDI E +D + Sbjct: 302 DEENHKILVHVKPEEVSKAIGKGGYNVKLASRLLDMEIDIFRE------GIQDEDVELTE 355 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +D+ + A G + + ++++ +EET ++ +E E Sbjct: 356 FSD--EIDQWVIEAFKAIGLDTAKSVLEQDVNDLIKRTDLEEETIEDVIRILKEEFE 410 >gi|228473549|ref|ZP_04058301.1| transcription termination factor NusA [Capnocytophaga gingivalis ATCC 33624] gi|228274921|gb|EEK13731.1| transcription termination factor NusA [Capnocytophaga gingivalis ATCC 33624] Length = 411 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 128/418 (30%), Positives = 230/418 (55%), Gaps = 12/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + + Y +FK+ +G I + + ++ VI+ D ++ ++ RD+ I + + G+ Sbjct: 123 HEYDNNTVYKKFKELIGTIYTAEIHHIKGKTVILLDDEGNEILLPRDKQIPSDFFKKGET 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+AV Sbjct: 183 TKGIIESVDFKGNKPSIILSRTSPVFLERLFEQEIPEIADGLITIQKVARIPGEKAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG+ G+R++++V EL +E ID++ +S ++ F+ AL PA +T + + Sbjct: 243 DTYDDRIDPVGACVGVNGARIRSIVRELGNENIDVISYSSNTNLFISKALAPAKITSITV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E + +F + Sbjct: 303 NEETKRAEVLLASEEVSKAIGKGGSNIRLASLLTGYEIDVFREGAEEDVELSEFED---- 358 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + E+ + ET E+ RE E Sbjct: 359 -----DIEPWVIEEFRRIGLDTAKSVLEYSAEELEKRIDLERETIEEVLRVLREEFEN 411 >gi|306823536|ref|ZP_07456911.1| transcription termination factor NusA [Bifidobacterium dentium ATCC 27679] gi|309802869|ref|ZP_07696970.1| transcription termination factor NusA [Bifidobacterium dentium JCVIHMP022] gi|304553243|gb|EFM41155.1| transcription termination factor NusA [Bifidobacterium dentium ATCC 27679] gi|308220336|gb|EFO76647.1| transcription termination factor NusA [Bifidobacterium dentium JCVIHMP022] Length = 346 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 199/349 (57%), Gaps = 15/349 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A + ID + + + ++++++ A R+E++P G +++ E+ E Sbjct: 10 QLAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGEPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 D P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F Sbjct: 70 E----------DPHPAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAF 117 Query: 135 KDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G V++ NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 LKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V V+ E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + +QLSLAIG+ GQN RLA++LTGW I I + E + Q+ E + Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHARKMQESAGESAE 346 >gi|262037365|ref|ZP_06010830.1| transcription termination factor NusA [Leptotrichia goodfellowii F0264] gi|261748622|gb|EEY35996.1| transcription termination factor NusA [Leptotrichia goodfellowii F0264] Length = 365 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 125/346 (36%), Positives = 199/346 (57%), Gaps = 3/346 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ++ L+ D + EK I ++ +L + ++ A + YG + + IN ETG++ Sbjct: 1 MKSKDQRVFLEALDELEKEKGIIKEELLEAVETALLAAYKKNYGDKDNAEISINRETGEV 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F +V+ VE +ISL+ A +GG + + +F R A+Q+AKQ+I+Q Sbjct: 61 KVFSRKTIVQTVEKPEEEISLEDAIALKKKSKLGGTIDFEINAENFKRNAIQNAKQIIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ + FK I+S V++ E GN+ +D+ + ++ E + G Sbjct: 121 KVRECEKKNIFNRFKQIEKSIVSAVVRKTDEKGNLYIDINGLEAIVPEKELSEADKFIQG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+K Y+ V + + LSR + M L ++E+PEI +G +Q+K ++R+ GSR K+ Sbjct: 181 DRLKVYVGAVEESTKYTKCFLSRKVEELMRGLLNLEIPEIEDGTIQIKQIAREAGSRTKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S D ++D GAC+G G R+Q+++ EL+ EK+D+V+W D FV NAL PA V V Sbjct: 241 AVYSDDPNLDVKGACIGKSGMRIQSIIDELKGEKVDVVLWDEDIRYFVKNALNPAEVISV 300 Query: 300 VLDED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + E+ V V +EQLSLAIG++GQN RLA++L G IDI T Sbjct: 301 EIIEEDGEQIARVEVDEEQLSLAIGKKGQNSRLAARLCGIKIDIHT 346 >gi|294790399|ref|ZP_06755557.1| transcription termination factor NusA [Scardovia inopinata F0304] gi|294458296|gb|EFG26649.1| transcription termination factor NusA [Scardovia inopinata F0304] Length = 372 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 112/341 (32%), Positives = 189/341 (55%), Gaps = 15/341 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ I+ + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 11 LAAEQGIEPERLDAALSEALRLAYLKTPHAARHARVELDERAGSFTVWAQKEIPQEPTEE 70 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 D P +G D P FGR A A+QVI R+ D + F Sbjct: 71 ----------DPHPKPVLGEEYDD--TPEGFGRQAAYIARQVITALFRKVADDNIFGAFA 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G+RV+ Y+ V + Sbjct: 119 GQKGKLITGVVQQDSNDRGNLHIAVGDVEALLPRREQVPGERFRHGERVRVYVVSVNKGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ G VQ+ +++R+ G R K+AV ++ ++P G+ Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELVTGAVQIMSIAREAGERTKIAVRANAQGVNPKGS 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIV 312 +G G RV+AV+ L +EKIDIV WS D A FV AL PA KV V+ E ++ Sbjct: 239 LIGPAGQRVRAVMENLGNEKIDIVDWSEDPAKFVSAALSPAHAVKVSVVSERNKTAVALI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +QLSLAIG+ GQN RLA++LTGW I I + E ++ Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESYEASQRKDEQ 339 >gi|167751252|ref|ZP_02423379.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702] gi|167655759|gb|EDR99888.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702] gi|291556761|emb|CBL33878.1| transcription termination factor NusA [Eubacterium siraeum V10Sc8a] Length = 370 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 130/349 (37%), Positives = 202/349 (57%), Gaps = 4/349 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLR 177 Q ++E ER++ ++ E ++ TV + E GN V+L ++ + R E I E LR Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+ Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPES 349 >gi|313886723|ref|ZP_07820432.1| transcription termination factor NusA [Porphyromonas asaccharolytica PR426713P-I] gi|312923825|gb|EFR34625.1| transcription termination factor NusA [Porphyromonas asaccharolytica PR426713P-I] Length = 469 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 131/424 (30%), Positives = 233/424 (54%), Gaps = 15/424 (3%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V +V ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + LAIG+ N++LAS LTG+ I++ + D+ + + F +++ + +L Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADT----TEEDIYLSEFSD--EIEDWVIKML 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + G + +E+ + ET + + + L++ + E+G+ +E Sbjct: 375 LDIGLNTARAVLTTSRTELLKKTDLEIETIDRVLR-----ILSSEFDLEE-LEEMGLPQE 428 Query: 437 LCSI 440 + Sbjct: 429 NIDL 432 >gi|298345265|ref|YP_003717952.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|298235326|gb|ADI66458.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] Length = 328 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 128/340 (37%), Positives = 188/340 (55%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLEV 68 + V EK +D + ++ + ++ KA R+ G RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VNELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTE 322 >gi|229496539|ref|ZP_04390253.1| transcription termination factor NusA [Porphyromonas endodontalis ATCC 35406] gi|229316436|gb|EEN82355.1| transcription termination factor NusA [Porphyromonas endodontalis ATCC 35406] Length = 455 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 122/407 (29%), Positives = 227/407 (55%), Gaps = 9/407 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID++ +++V+ + ++GT + + ++PE GD+ ++R VV + V+N Sbjct: 21 KNIDKETLINVLKSAFMSVLSKMFGTDENFTIIVSPEMGDLEIWRNRMVVADGSVQNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A DP +IG V+D + FGR A+ + +Q + KV E +++ Y +F+++ Sbjct: 81 EISLSDALPLDPDAEIGSEVTDSINFASFGRRAILNLRQALQGKVLELQKENLYKKFQER 140 Query: 138 VGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+++S V +V ++VD ++ ++ + E I + R G+ V + I V E Sbjct: 141 VGQMVSAEVYQVWKREALLVDDEGNELLLPKSEQIPGDYFRKGESVHAVIDHVDYENNNI 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ +SRT +F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIYVSRTSQEFLKRLFELNVPEIGDGLITIKRVARIPGERAKMAVESYDDRIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL+ E ID++ ++ +S+ FV AL PA V+ + + + + EV + E+ Sbjct: 261 MNGSRIRGIVRELKGENIDVMSYTTNSSLFVQRALSPAKVSSIEILPEELKAEVYLSPEE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + +AIG+ N++LAS LTG+ I++ + E++ + + F +++ + +L Sbjct: 321 VPMAIGKNASNIKLASALTGYKIEVFRDIEEN----DEEDIFLNEFND--EIEDWVLEVL 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 G + + +E+ S +E T + + ++ Sbjct: 375 KNIGCNTALSVLRIPRAELISKADLEESTVDHVLEVLSSEFDPEELE 421 >gi|315655685|ref|ZP_07908583.1| transcription termination factor NusA [Mobiluncus curtisii ATCC 51333] gi|315489749|gb|EFU79376.1| transcription termination factor NusA [Mobiluncus curtisii ATCC 51333] Length = 328 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 128/340 (37%), Positives = 189/340 (55%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLEV 68 + V EK +D + ++ + ++ KA R+ G RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTE 322 >gi|308235445|ref|ZP_07666182.1| transcription elongation factor NusA [Gardnerella vaginalis ATCC 14018] gi|311114226|ref|YP_003985447.1| transcription termination factor NusA [Gardnerella vaginalis ATCC 14019] gi|310945720|gb|ADP38424.1| transcription termination factor NusA [Gardnerella vaginalis ATCC 14019] Length = 349 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 120/344 (34%), Positives = 197/344 (57%), Gaps = 19/344 (5%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV--VEEV 72 +A ++ I+ + + +A++++ A RVE++ G +++ E+ V Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTSHPARHARVELDERAGSFTVWAKDEIPGVPTE 69 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 +N P+ +G D P DFGR+A +A+QVI Q R+ E DR + Sbjct: 70 DNP------------HPAPTLGEEYDD--TPRDFGRLAAATARQVITQLFRKVEDDRVFG 115 Query: 133 EFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 F + G++I+G V++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 116 AFSGQKGKLINGVVQQDSKDPSNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVA 175 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGP++++SR+HP + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 176 RGLRGPEIVVSRSHPDLVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNP 235 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 GA +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 236 KGALIGPGGSRVRAVMENLGPEKIDIVDWSEDPAKFVAAALSPATATQVHVVSEKSQTAV 295 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + QLSLAIG+ GQN RLA++LTGW I I + EE + +++ Sbjct: 296 AFIHDSQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKQEE 339 >gi|291531685|emb|CBK97270.1| transcription termination factor NusA [Eubacterium siraeum 70/3] Length = 370 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 129/349 (36%), Positives = 202/349 (57%), Gaps = 4/349 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLR 177 Q ++E ER++ ++ E ++ TV + E GN V+L ++ + R E I E L+ Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+ Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPES 349 >gi|205373420|ref|ZP_03226224.1| transcription elongation factor NusA [Bacillus coahuilensis m4-4] Length = 286 Score = 367 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 104/266 (39%), Positives = 175/266 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I RD+++ + ++ A + + ++RV+++ E G I +F E Sbjct: 4 ELLDALDYLEKEKGIARDILIDAIEAALVSAYKRNFNQAQNVRVDLHQENGTIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V++V + +IS++ A+ P ++G +V + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 IVDQVFDPRLEISIEDAKQIHPGYEVGDIVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ E + E+ +P DR+K ++ Sbjct: 124 GIIYSEFIDREEDIMTGIVQRLDNRYIYVALGKIEALLPISEQMPNESYKPHDRIKVFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEI++G V++K+VSR+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIFDGTVEIKSVSREAGDRSKISVHAENPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEK 273 +DPVGACVG +G+RVQA+V EL+ EK Sbjct: 244 VDPVGACVGSKGTRVQAIVNELKGEK 269 >gi|304390822|ref|ZP_07372774.1| transcription termination factor NusA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325705|gb|EFL92951.1| transcription termination factor NusA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 328 Score = 367 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 128/340 (37%), Positives = 190/340 (55%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLEV 68 + V EK +D + +++ + ++ KA R+ G RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLINTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTE 322 >gi|220907502|ref|YP_002482813.1| transcription elongation factor NusA [Cyanothece sp. PCC 7425] gi|219864113|gb|ACL44452.1| NusA antitermination factor [Cyanothece sp. PCC 7425] Length = 413 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 200/363 (55%), Gaps = 29/363 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56 L ++ +A++ E+++ + V + +++ K + + VEI+ E Sbjct: 9 LREMINAISRERNLPKYAVQGALQEALMKGYERYRRTLRLEGGHFDEDYFQNFDVEIDVE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VE+V+N QISL ++ +G V + P +FGR+A A Sbjct: 69 EEGFRVLATKTIVEQVDNPDHQISLSEVQEVAAEAQLGDTVILDVTPEQQEFGRMAAIQA 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDQQRKLVQEEFQDLESTVLQARVLRFERRSVIMAVSSGFGQPEVEAELPKK 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVLEGPHRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L + + + ++V +QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVEEVRLMNPEERQAHILVTDDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DII 342 DI Sbjct: 369 DIK 371 >gi|37523058|ref|NP_926435.1| transcription elongation factor NusA [Gloeobacter violaceus PCC 7421] gi|35214061|dbj|BAC91430.1| glr3489 [Gloeobacter violaceus PCC 7421] Length = 383 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 29/367 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAA---RSLYG---------TMSDIRVEINPETGDI 60 + ++ ++++ + V + ++++K R Y + VE++ + Sbjct: 13 IETISRQRNLPKHAVKEALIEALKKGYERFRKTYRDPRENSEEMAFDNFIVELDTDREGF 72 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVI 118 + +VE V + +I+L R+ P + GG V + P DFGR+A KQV+ Sbjct: 73 RVLATKTIVETVSDTDQEIALIEVREVAPDAEPGGTVVVDVTPEKGDFGRMAAIQTKQVL 132 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETIS 172 QK+R+ +R EF++ G ++ V R E +VI + + + ++E + Sbjct: 133 SQKLRDQQRKLIQEEFRELEGTVLQARVMRFEGRSVICAVSSGFGQNEVEAELPKNEQLP 192 Query: 173 RENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E R G K ++ V R GPQ+L+SR +V LF EVPEI + IV++ AV+R Sbjct: 193 NEPYRIGSAFKVFLRKVWEGSRRGPQLLVSRADAGLVVYLFANEVPEIEDEIVRIVAVAR 252 Query: 232 DP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 + G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD A Sbjct: 253 EANPPSRTVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPA 312 Query: 285 TFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 T++ NAL PA V +V ++D D + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 313 TYISNALSPARVIQVRLVDPDARQAHVIVPDDQLSLAIGKEGQNVRLAARLTGWKIDIKK 372 Query: 344 EEEDSIN 350 E S Sbjct: 373 SSEYSAE 379 >gi|119485069|ref|ZP_01619454.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106] gi|119457297|gb|EAW38422.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106] Length = 409 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 31/378 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTMSDI 49 MVS L+ + ++ E+++ + V + +++ K + Sbjct: 3 MVSLPGLK--DMIQNISQERNLPKQAVEEALREALLKGYERYRRTVQINTQFTEDYFDNF 60 Query: 50 RVEINPETGDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DF 106 VE++ E + L +VEEV N QISL+ R+ P +G V+ + P DF Sbjct: 61 DVELDVEEEGFRVLAKNLTIVEEVTNQDHQISLQDVREVAPEAQLGDTVTLDVTPEQSDF 120 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------ 160 GR+A KQV+ QK+R+ +R EFKD ++ V R E +VI+ + + Sbjct: 121 GRMAAIQTKQVLAQKLRDQQRKMIQDEFKDLESSVLQARVLRFERQSVIMSVNSGFGHQE 180 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEI 219 + + + E + +N R + Y+ V + QRGPQ+++SR +V LF EVPEI Sbjct: 181 VEAELPKREQLPNDNYRANATFRVYLKRVSQGSQRGPQLIVSRADAGLVVYLFANEVPEI 240 Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 + +V++ AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR E Sbjct: 241 EDEVVRIVAVAREANPPSTHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGE 300 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 KID++ WSPD +T++ NAL PA V +V +++ + R ++VP++QLSLAIG+ GQNVRLA Sbjct: 301 KIDVIRWSPDPSTYIANALSPARVDEVRLVNPEERRAHILVPEDQLSLAIGKEGQNVRLA 360 Query: 332 SQLTGWTIDIITEEEDSI 349 ++LTGW IDI + Sbjct: 361 ARLTGWKIDIKDTAKYDA 378 >gi|223984472|ref|ZP_03634605.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM 12042] gi|223963543|gb|EEF67922.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM 12042] Length = 571 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 141/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLF 63 N E L+ + ++ I +++V++ + +++ KA R +RV+IN G I ++ Sbjct: 2 NFKEFLKAMQTIEDDRKITKEIVIAALQEALAKAYRKHIDIPDVLVRVDINEANGQIHVY 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + VVEEVE+ +++L + D +G +V + GR A AK V+ QK+R Sbjct: 62 QQYTVVEEVEDEELEVALADVK--DKGYQLGDLVDHEVDISQIGRAAALLAKNVMKQKIR 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAE+ Y E+ D++ E+++G ++ VE V+V+LG + ++ R I E G ++ Sbjct: 120 EAEKQAVYDEYIDQLDEMVTGMIESVEEKFVVVNLGKTMALMPRAAQIPGERYVEGQSIR 179 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I + ++ +G QVL+SR+ + + +LF EVPEIY G+V++KA++R+ G R K+AV+S Sbjct: 180 VVITECNKDTKGAQVLVSRSDAKLVKRLFEKEVPEIYQGVVEIKAIAREAGERTKMAVWS 239 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +D +GAC+G RGSRVQ V+ EL+ EKIDI WS + + + NAL PA + V+ E Sbjct: 240 NNPDVDAIGACIGPRGSRVQVVIDELKGEKIDIFEWSDNISELIKNALAPAQILAVLPTE 299 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D + V+V QLSLAIG++G+N RLA +LTG IDI T E QF Sbjct: 300 DKRSLLVVVEDNQLSLAIGKKGKNARLAVKLTGMRIDIKTAGEIEEQGIDWKTMMLQFAA 359 Query: 364 QAIN--VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + ++ IA L G +VE + + EE A +Q E Sbjct: 360 EEQKRLAEQRIAKQLEEAGVQEVETEPDDEQEAVIETPEVSEE-AETVQEAVVE 412 >gi|315656401|ref|ZP_07909290.1| transcription termination factor NusA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492960|gb|EFU82562.1| transcription termination factor NusA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 328 Score = 366 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 128/340 (37%), Positives = 189/340 (55%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLLEV 68 + V EK +D + ++ + ++ KA R+ G RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQSGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V V+DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTE 322 >gi|186685820|ref|YP_001869016.1| transcription elongation factor NusA [Nostoc punctiforme PCC 73102] gi|186468272|gb|ACC84073.1| NusA antitermination factor [Nostoc punctiforme PCC 73102] Length = 425 Score = 365 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 132/375 (35%), Positives = 207/375 (55%), Gaps = 29/375 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L ++ ++++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKELIESISRERNLPRLAVQSAIREALLKGYERYRRAQNLERKQFDEDYFENFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P +G V + P +FGR+A Sbjct: 69 GEGFRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +V++ + + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + Q RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKD 354 DI + + + + Sbjct: 369 DIKDKAKYDYAGEDE 383 >gi|50954461|ref|YP_061749.1| transcription elongation factor NusA [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950943|gb|AAT88644.1| transcription termination/antitermination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 332 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 192/345 (55%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-------IRVEINPETGDISL 62 L + + E+ I + ++ ++ +I A RV ++ +TG +++ Sbjct: 5 LSVLRLMEREREIPFEELVQIIEQAILTAYLKHTDQADHRHGEPPAARVHLDRKTGHVTV 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +RD ++ G D P DFGR+A +AKQVI Q++ Sbjct: 65 Y--------------------VPERDDDGNVIGEAED--SPSDFGRIAAFAAKQVINQRL 102 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 R+ D EF+ G+I++G +++ V +DLG+ + ++ +E + E G R Sbjct: 103 RDLADDAVLGEFRGCEGDIVAGVIQQGPNPRMVHIDLGSVEAILPPEEQVHGEEYPHGSR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V + +GP + +SRTHP + KLF +EVPEI +G+V++ +++R+ G R K+AV Sbjct: 163 IRVYVTSVAKGPKGPSITVSRTHPTLVRKLFALEVPEIASGVVEIVSIAREAGHRTKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VV 300 +++ ++ GAC+G G RV+AV EL EKIDIV +SPD ATFV +AL PA VT V Sbjct: 223 RATEPGVNAKGACIGELGQRVRAVTAELNSEKIDIVDYSPDLATFVSSALSPAKVTSAFV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +DE + + +VP QLSLAIG+ GQN RLA++LTG IDI + Sbjct: 283 IDESLKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDS 327 >gi|298490031|ref|YP_003720208.1| NusA antitermination factor ['Nostoc azollae' 0708] gi|298231949|gb|ADI63085.1| NusA antitermination factor ['Nostoc azollae' 0708] Length = 425 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 29/363 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L ++ ++++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKELIESISRERNLPRLAVQSSIREALLKGYERYRRAQNLERKQFDEDYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VE+V N QISL+ + P G V + P +FGR+A Sbjct: 69 GEGFRVLSTKTIVEQVNNSDHQISLEEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVTSGFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + Q RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DII 342 DI Sbjct: 369 DIK 371 >gi|313115476|ref|ZP_07800941.1| transcription termination factor NusA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622186|gb|EFQ05676.1| transcription termination factor NusA [Faecalibacterium cf. prausnitzii KLE1255] Length = 368 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 139/352 (39%), Positives = 210/352 (59%), Gaps = 8/352 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59 M +AN E + + +E+ I + ++ + +I A + Y ++V+I+P G Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHVKVDIDPAAGR 59 Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + +VV E+ + +I + A+ S ++G + PL DFGR+A Q+AK V Sbjct: 60 FDVALIQDVVADEDWYDEHSEIGITEAQKIRKSYEVGDRIVTPLKTKDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNS-DGVIRRDETISRE 174 I Q +REAER +Q E + + +I+ TV RV E G V +DLG + ++ +E + E Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPHNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G ++ Y+ DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G Sbjct: 180 VYTEGQTLQVYVVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V KV L V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPES 351 >gi|237736658|ref|ZP_04567139.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC 9817] gi|229420520|gb|EEO35567.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC 9817] Length = 354 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 131/334 (39%), Positives = 205/334 (61%), Gaps = 3/334 (0%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQ 78 I ++ +LS + ++ A + YG D+ VEI+ ETGD+ ++ + VV E++ + + Sbjct: 21 GISKESLLSTVEQALLAAYKKNYGEEEDVEVEIDRETGDVKIYEVKTVVPTEDLYDAAIE 80 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 IS A + + IG V+ + +F R A+Q+ KQ++IQKVREAER+ Y FK K Sbjct: 81 ISYDDALEIKKRVKIGEVIRIEVNCEEFRRNAIQNGKQIVIQKVREAEREYIYDRFKVKE 140 Query: 139 GEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +II+G ++R+ E NV ++ + ++ E + R G+R+K Y+ +V + + P+ Sbjct: 141 HDIINGIIRRIDERKNVFIEFDGIEAILPPVEQSPADTYRVGERIKVYLAEVEKTNKFPK 200 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 +++SR H + KLF +E+PEI +G++++KAV+R+ GSRAK+AV+S+D +ID VGAC+G Sbjct: 201 IVISRKHEGLLRKLFELEIPEITSGLIEIKAVAREAGSRAKVAVYSADPNIDTVGACIGQ 260 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +G R++ +V EL EKIDIVVW FV L PA V V + E+ VIV QL Sbjct: 261 KGLRIKNIVNELNGEKIDIVVWKESVEEFVSAVLSPAKVVSVEVVEEENTARVIVDNSQL 320 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 SLAIG+ GQN RLA++LTG +DI T + Sbjct: 321 SLAIGKNGQNARLAAKLTGMRVDIKTADRVEEGE 354 >gi|229818209|ref|ZP_04448491.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM 20098] gi|229784460|gb|EEP20574.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM 20098] Length = 346 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 200/360 (55%), Gaps = 20/360 (5%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL L +A E+ ID + + ++++++ A R+E++ G +++ Sbjct: 1 MELDLAGIHKLAAEQGIDAETLDDALSEALRLAYLKTPHAAKHARIELDDRAGTFTVWAA 60 Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 E+ EN P+ +G D P DFGR+A +A+QVI R Sbjct: 61 DEIPGTPTEENP------------HPAPTLGEEYDD--TPKDFGRLAAATARQVITLLFR 106 Query: 124 EAERDRQYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 AE ++ + F + G++I+G V++ + NV + +G+ + ++ R E + E R G+R Sbjct: 107 HAEDEKIFGAFSGQKGKLITGIVQQDVKDSSNVHIAMGDVEALLPRREQVPGERYRHGER 166 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V R +GP++++SR+HP+ + LF EVPE+ +G V + A++R+ G+R K+AV Sbjct: 167 LRVYVVNVGRGLKGPEIIVSRSHPELVRCLFEREVPELVSGAVSIMAIAREAGARTKIAV 226 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 ++ ++P GA +G G+RV+AV+ L EKIDIV +S D A FV +AL PA+ T V + Sbjct: 227 KANTEGVNPKGALIGPGGARVRAVMENLGQEKIDIVDYSDDPAKFVASALSPAVATGVQI 286 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + E + +QLSLAIG+ GQN RLA++LTGW I I + E + + + + Sbjct: 287 ISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAETHAKKMAEQTEQADE 346 >gi|295098916|emb|CBK88005.1| transcription termination factor NusA [Eubacterium cylindroides T2-87] Length = 545 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 155/491 (31%), Positives = 256/491 (52%), Gaps = 14/491 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + + ++ + ++V + +++ KA R + D VE+ E G I ++ +V Sbjct: 8 LQKALQGIENDRQLSSEIVEDALREALTKAYRKHI-EIPDAYVEVVIEDGIIHIYHQRKV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE+VE+ +ISL+ AR + +I + V++ + F R AV AK V+ QK+REAE+ Sbjct: 67 VEDVEDDELEISLEDARKVNKNIQLDDFVNEEVDFTTFDRAAVVLAKNVMKQKIREAEKA 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + Y E+ DK+ E++ G V+ VE VIV++G + ++++ + I E G ++ I + Sbjct: 127 QVYEEYCDKLDEMVLGVVETVEEKFVIVNIGKTLAMLKKSQQIPTEKYYEGQKLLVVITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++RDPG R K+AV+S + +I Sbjct: 187 VNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIARDPGERCKIAVYSHNENI 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR- 307 DP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E+V Sbjct: 247 DPIGACIGPRGSRVQTIINELNGEKIDIFEWSDNISELIENALSPSEAVAVIPNENVKDG 306 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + V+VP QLSLAIG+RG+N RLA +L+ IDI +E E + + Sbjct: 307 LIVVVPDSQLSLAIGKRGKNARLAVKLSNRKIDIKSESEMQELGIDYMTIAKELQEEYE- 365 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 A + +++ +K SEI IE D E ++ + + Sbjct: 366 -----AKKAKERAYKQQQKIEELKHSEI-EIENVDVADFDYDDDIDTTTYEEVEGPIHQN 419 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 L E + ++ ++A + KT D + + EN K + Sbjct: 420 TTTLFEKERETELDEMEEAARIAKEKRKEKTAAD-----IKEYTSKFENFADASNKSEQV 474 Query: 488 LSSLGTPKDQV 498 +S ++ Sbjct: 475 VSKPKKKVEEA 485 >gi|269120926|ref|YP_003309103.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386] gi|268614804|gb|ACZ09172.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386] Length = 358 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 136/357 (38%), Positives = 216/357 (60%), Gaps = 3/357 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + ++ L+ D + EK I ++ +L + ++ A + YG + V+IN +TG++ Sbjct: 1 MKAKDQRIFLEALDELEKEKGIKKEELLEAVETALLAAYKKNYGEKENAEVKINHDTGEV 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F E+V+EVEN +ISL A++ +GGVV + DF R A+Q+AKQ++IQ Sbjct: 61 KVFSRKEIVDEVENPEYEISLDDAKNFKKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ Y FK+K I++G V++V E G++ +D+ + +I E + + G Sbjct: 121 KVRECEKQNIYNNFKEKENSIVTGIVRKVDEKGSLYIDINGLEAIIPEKELSDTDVFKQG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRVK YI V + + +SR + + KLF +E+PEI +G++ +K+V+R+ GSR K+ Sbjct: 181 DRVKVYIGKVEEGTKFTKTFISRKSEEMIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 A++S D ++D GAC+G G R+Q+++ EL+ EKIDIV+W+ D FV NAL PA V V Sbjct: 241 AIYSDDPNLDVKGACIGKGGMRIQSIIDELKGEKIDIVLWNEDIRYFVKNALNPAEVISV 300 Query: 300 VL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 + D +V V +QLSLAIG++GQN RLA++L G IDI T E + ++ Sbjct: 301 EIIEDNGEEVAKVEVASDQLSLAIGKKGQNSRLAAKLCGIKIDIFTSELPDDSEPEE 357 >gi|298253047|ref|ZP_06976839.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1] gi|297532442|gb|EFH71328.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1] Length = 360 Score = 364 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 119/356 (33%), Positives = 199/356 (55%), Gaps = 15/356 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A ++ I+ + + +A++++ A +RVE++ G +++ E+ + Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 70 DN----------PYPAPTLGEEYDD--TPHDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASADLN 353 >gi|18158875|pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa gi|18158876|pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa Length = 366 Score = 364 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 199/345 (57%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 24 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 76 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 77 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 121 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 122 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 182 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 242 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 302 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 >gi|268608287|ref|ZP_06142014.1| NusA antitermination factor [Ruminococcus flavefaciens FD-1] Length = 416 Score = 364 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 133/345 (38%), Positives = 207/345 (60%), Gaps = 5/345 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDI 60 +S N + +++ E S++ D+++ + ++ KAA+ Y + IRVEI+P+T Sbjct: 1 MSKNNA-FFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKF 59 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F + +++++ ++++ VAR DP+ +GG + + GR+A SAKQ I Sbjct: 60 EMFIVQDIIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKG 119 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRP 178 +RE R++ +F+ K E I+ V +VE G V V ++ + R+E I E L Sbjct: 120 DLREINREQMLGKFEQKEHECITAKVSQVEPGRGTVTVVYEGTELYLFRNEQIPGETLEE 179 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G VK YI + + + P V +SRTH + +LF +EVPEIY+G V+VK++SR+ GSR K Sbjct: 180 GQSVKVYITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTK 239 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S D ++D VGAC+G + SR+ A+V EL EKIDI+ WS + F+ AL PA V K Sbjct: 240 IAVWSKDPNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLK 299 Query: 299 -VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +V E+ VIVP QLSLAIG +GQN +LA++LTG+ IDI Sbjct: 300 TIVTSEEENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDIK 344 >gi|148273335|ref|YP_001222896.1| transcription elongation factor NusA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831265|emb|CAN02221.1| putative transcriptional termination/antitermination factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 335 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 33/347 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDI 60 L + + E+ I + ++S++ +I A RV ++ +TG + Sbjct: 5 LSVLRLMEREREIPFEELVSIIEQAILTAYLKHTDQADAKPVADGVPPARVHLDRKTGHV 64 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ V E++ I P DFGR+A +AKQVI Q Sbjct: 65 SVH-----VPELDEDGLVIG-----------------ESEDSPSDFGRIAAFAAKQVINQ 102 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 ++R+ DR EFK + G+I++G V++ + VDLG + ++ +E + E G Sbjct: 103 RLRDIGDDRILGEFKGREGDIVAGVVQQGPNPRMIHVDLGTIEAILPPEEQVPGEKYVHG 162 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI G+V++ +++R+ G R K+ Sbjct: 163 SRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIAQGLVEIVSLAREAGHRTKI 222 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TK 298 AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S FV NAL PA V + Sbjct: 223 AVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSESLPVFVGNALSPARVTSS 282 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+D+ + +VP QLSLAIG+ GQN RLA++LTG IDI + Sbjct: 283 FVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDS 329 >gi|283782785|ref|YP_003373539.1| transcription termination factor NusA [Gardnerella vaginalis 409-05] gi|283441834|gb|ADB14300.1| transcription termination factor NusA [Gardnerella vaginalis 409-05] Length = 360 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 119/356 (33%), Positives = 199/356 (55%), Gaps = 15/356 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A ++ I+ + + +A++++ A +RVE++ G +++ E+ + Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 70 DN----------PYPAPTLGEEYDD--TPRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASADLN 353 >gi|297242938|ref|ZP_06926876.1| transcription elongation factor NusA [Gardnerella vaginalis AMD] gi|296889149|gb|EFH27883.1| transcription elongation factor NusA [Gardnerella vaginalis AMD] Length = 360 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 117/335 (34%), Positives = 194/335 (57%), Gaps = 15/335 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A ++ I+ + + +A++++ A +RVE++ G +++ E+ + Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 70 DN----------PYPAPTLGEEYDD--TPRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V V+ E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + QLSLAIG+ GQN RLA++LTGW I I + EE Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEE 332 >gi|261883881|ref|ZP_06007920.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 307 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 159/271 (58%), Positives = 205/271 (75%) Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 ACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVLDED RIEV+V Sbjct: 1 ACVGMRGSRVQAVVFELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVLDEDAERIEVVV 60 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 P +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ FM+A+NVDE++ Sbjct: 61 PNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNLFMEALNVDEMV 120 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432 +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ + +ELG Sbjct: 121 GQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEAEQDARRKELG 180 Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 V++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ G L+ Sbjct: 181 VADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTINHSGVLTPFD 240 Query: 493 TPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 + E M++ AR K WI ++++A Sbjct: 241 LSRVDAEHMVLAARLKACWITEQELAAASGD 271 >gi|319951028|ref|ZP_08024892.1| transcription elongation factor NusA [Dietzia cinnamea P4] gi|319435308|gb|EFV90564.1| transcription elongation factor NusA [Dietzia cinnamea P4] Length = 328 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 123/346 (35%), Positives = 191/346 (55%), Gaps = 31/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ E+ I D ++ + +++ A + G R+ ++ + G +++ Sbjct: 5 MAALNMLSLEREIPLDDLVQTLENALLTAYKRTDGAHRVARIALDRKAGTVAVLA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EV+ +I + P DFGRVA +A+Q+I+Q++REAE DR Sbjct: 60 AEVDEDGNRIG-----------------EFDVTPSDFGRVAAATARQIILQRLREAETDR 102 Query: 130 QYLEFKDKVGEIISGTVK---RVEYGNVIV-----DLGNSDGVIRRDETISRENLRPGDR 181 Y + + GE++SG ++ R ++V + G ++G I E + E+ R GDR Sbjct: 103 IYGDLVTREGEVVSGVIQSDSRANARGIVVVHIGPENGGTEGTIAPAEQVPGESYRHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K ++ V + G V LSRTHP + LF +EVPEI +G V++ A++R+ G R K+AV Sbjct: 163 IKCHVVGVHKGPHGASVSLSRTHPDLVRGLFALEVPEIGDGSVRIAAIAREAGHRTKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ S ++ GAC+G G+RV+AV+ EL EKIDIV + D FV NAL PA V V + Sbjct: 223 ESTVSGLNAKGACIGPNGARVRAVMAELNGEKIDIVDYDDDPTVFVGNALSPAKVISVTV 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 DE V+VP QLSLAIG+ GQN RLA +LT W IDI ++ E Sbjct: 283 ADEQARAARVVVPDYQLSLAIGKEGQNARLAHRLTQWRIDIHSDAE 328 >gi|227497551|ref|ZP_03927779.1| transcription termination factor NusA [Actinomyces urogenitalis DSM 15434] gi|226833005|gb|EEH65388.1| transcription termination factor NusA [Actinomyces urogenitalis DSM 15434] Length = 348 Score = 363 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 129/351 (36%), Positives = 191/351 (54%), Gaps = 28/351 (7%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N EL A E ID + +L + D+I A + G + VEI+ +G ++ Sbjct: 1 MDINMPELRGA----AQELGIDLEDLLPAIEDAILGAYTKVPGAIRGAHVEIDRRSGHMA 56 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V+E + T + P DFGR+A +A+ VI+Q+ Sbjct: 57 VLAPE--VDEEDQPTGEF-------------------FDDTPDDFGRIAQATARSVIVQR 95 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 +++ FKDK GE+ISGTV++ + V V L +G++ E + E R G Sbjct: 96 IQDRRDFEVLGAFKDKAGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHG 155 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++Y+ +V R +G Q++LSRTHP + KLF EVPE+ +G V++ AV+R+ G R K+ Sbjct: 156 DRIRAYVTEVSRGPKGAQIILSRTHPGLVRKLFEREVPELVSGDVEIMAVAREAGHRTKM 215 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S + GAC+G G RV+AV+ EL EKIDIV +S + A F+ NAL PA V+ V Sbjct: 216 AVRSRQRGLGAKGACIGPMGQRVRAVMAELGGEKIDIVDYSDEPARFIANALSPARVSSV 275 Query: 300 VLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 + + +VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 276 HIQSMEDQTAKAVVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAETGE 326 >gi|319790652|ref|YP_004152285.1| NusA antitermination factor [Thermovibrio ammonificans HB-1] gi|317115154|gb|ADU97644.1| NusA antitermination factor [Thermovibrio ammonificans HB-1] Length = 380 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 148/361 (40%), Positives = 219/361 (60%), Gaps = 25/361 (6%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 + + EK I ++ V+ + I AA+ G D+ V+I+ + D +++ +VVEEV Sbjct: 8 IELLCKEKGISKEDVIEAVKVGIINAAKKA-GYRGDLVVKIDEDGKDFGIYQRKKVVEEV 66 Query: 73 ENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + +ISL+ AR+ + +G V + + GR+A ++A QVI K+ EAER + Sbjct: 67 TDPDHEISLEEARELFGDQVKLGDEVLIEIKTEELGRIAAKAAAQVIHDKITEAERRALF 126 Query: 132 LEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV- 189 F+ K+G++ISGTVK ++ G+++VDLG GV+ ++E I +E R GDRV++YIYDV Sbjct: 127 DYFRQKIGDVISGTVKEIKRNGDIVVDLGRVIGVLPKEEQIPKERYRIGDRVRAYIYDVV 186 Query: 190 ---RREQRG----------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 +R R P V+LSRTHP+ + +L +E+PE+ G+V+VKAV+R+PG R Sbjct: 187 FDYKRYNRKKPSRIDDYPPPYVILSRTHPKLLKRLMEIEIPEVAEGLVEVKAVAREPGVR 246 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S + IDPVGAC+G++GSR+ + EL EKI+I+ WS D A V AL PA V Sbjct: 247 AKVAVDSKEDYIDPVGACIGVKGSRILPISRELSGEKIEIIRWSDDVAELVARALSPAKV 306 Query: 297 TKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT-----IDIITEEEDS 348 + ED R+EV+VP +QLSLAIG+ G N RLAS+L G IDII E + Sbjct: 307 IQAESYEDENGEFRVEVVVPDDQLSLAIGKHGVNARLASKLAGQAGHVVGIDIIKESDYR 366 Query: 349 I 349 Sbjct: 367 K 367 >gi|313206787|ref|YP_004045964.1| nusa antitermination factor [Riemerella anatipestifer DSM 15868] gi|312446103|gb|ADQ82458.1| NusA antitermination factor [Riemerella anatipestifer DSM 15868] gi|315023860|gb|EFT36862.1| transcription elongation factor NusA [Riemerella anatipestifer RA-YM] gi|325335773|gb|ADZ12047.1| Transcription elongation factor [Riemerella anatipestifer RA-GD] Length = 411 Score = 362 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 219/409 (53%), Gaps = 11/409 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + L L++ EK+I + +++++ DS++ R Y + V +NP+ GD +F Sbjct: 2 DNLALIEAFGDFKEEKNISKIDLMAIIEDSLKTLLRKRYDSDDHFDVIVNPDKGDFQIFL 61 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+ E+ +I + AR DP+ ++G + + GR + + KQ++ K+ Sbjct: 62 NKTIVEDQMSEDDDLEIEISEARKTDPTFEVGEEFTQEIKVSQLGRRNILTLKQILATKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 +E Y +FKD++GEI+ G V + + +VI+ D ++ ++ +D+ I + R GD Sbjct: 122 QEHHNAYLYEQFKDRIGEIMVGEVHHIRFKHVILLDDEGNEYILPKDKQIPSDFFRKGDN 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V + PQ+ +SR P+F+ +L +E+PEI +G + +K V R PG +AK+AV Sbjct: 182 VRAVIESVDFKGSKPQITISRISPKFLERLLELEIPEIQDGTIILKKVVRIPGEKAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+ + Sbjct: 242 DAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKIDI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 + + + V P E+++ IG++GQN++LAS L+ + ID+ E +D + Sbjct: 302 NAEESKALVYTPSEEIAKIIGKQGQNIKLASWLSDYEIDVYREA------HEDDDVELDE 355 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 F +++ + G + + + + +EET E++ Sbjct: 356 FSD--EIEDWVIETFKKVGLDTAKSIIDKDTEALVRLTDLEEETIEEVK 402 >gi|255994863|ref|ZP_05427998.1| transcription termination factor NusA [Eubacterium saphenum ATCC 49989] gi|255993576|gb|EEU03665.1| transcription termination factor NusA [Eubacterium saphenum ATCC 49989] Length = 367 Score = 362 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 136/340 (40%), Positives = 212/340 (62%), Gaps = 1/340 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + E I +D ++ +M +S+ A YG S V+I+ +TG + Sbjct: 2 NKEIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIVS 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++V EVEN ++SL + D + GGVV + FGR+A Q+AKQV +QK++E Sbjct: 62 KDIVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKER 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ + + EFK + GEII+G V RV + V L + +I E I E GDR+K+ Sbjct: 122 EKQKIFSEFKGREGEIITGKVSRVTMRAIHVALNTTTAIIPLAEQIQGETYEVGDRIKAC 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V QRGPQ++LSR PQF+ +LF EVPEI NG V++ ++R+ G+R K+AV+S + Sbjct: 182 IKTVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGAC+G+RG+R+ A++ +L EK+D+V+W+ D FV A++PA +++L E+ Sbjct: 242 EELDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLEED 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + VIV ++LSLAIGR+GQNVRLAS+L +ID+ T++ Sbjct: 302 K-VIVIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKD 340 >gi|308176799|ref|YP_003916205.1| transcription elongation protein NusA [Arthrobacter arilaitensis Re117] gi|307744262|emb|CBT75234.1| transcription elongation protein NusA [Arthrobacter arilaitensis Re117] Length = 327 Score = 362 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 24/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + ++ I DV++ + ++ A G M R I G +++ V Sbjct: 5 LNALRILEKDRDIPMDVLIPTIESALLLAYNKTEGAMPGARAHIERSNGHVAIL-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ RD + + G D P FGR+A +A+QVI+Q++REAE + Sbjct: 60 ED---------------RDNAGVLLGEFDD--TPHGFGRIAASTARQVIMQRLREAEDAQ 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ +VG +ISG +++ V V +G+ + ++ E E + G+R+++Y+ Sbjct: 103 VVGEYAARVGTLISGVIQQGYSSHMVQVKIGDLEALLPPVEQSPGEKYQHGNRLRAYVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP V LSR+HP + LF MEVPEI +G V V+A++R+ G R K+AV ++ + + Sbjct: 163 AERGNKGPAVTLSRSHPNLVRLLFEMEVPEIADGTVAVEALAREAGHRTKIAVHATKAGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR 307 + GAC+G G+RV+AV+ EL DEKIDIV ++ D A F+ AL P+ V V +LD + R Sbjct: 223 NAKGACIGEMGTRVRAVMNELNDEKIDIVDYNEDPAKFIAAALSPSKVISVEILDAEERR 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI+ + Sbjct: 283 ARVVVPDSQLSLAIGKEGQNARLAAKLTGWRIDILAASGGKEPQ 326 >gi|15842382|ref|NP_337419.1| transcription elongation factor NusA [Mycobacterium tuberculosis CDC1551] gi|13882681|gb|AAK47233.1| N utilization substance protein A [Mycobacterium tuberculosis CDC1551] Length = 343 Score = 362 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 199/345 (57%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 1 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 53 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 54 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 98 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 99 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 158 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 159 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 218 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 219 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 278 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 279 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 323 >gi|260201972|ref|ZP_05769463.1| transcription elongation factor NusA [Mycobacterium tuberculosis T46] gi|289444392|ref|ZP_06434136.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] gi|289417311|gb|EFD14551.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] Length = 347 Score = 362 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 199/345 (57%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPATEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 327 >gi|17231321|ref|NP_487869.1| transcription elongation factor NusA [Nostoc sp. PCC 7120] gi|17132963|dbj|BAB75528.1| transcription termination factor [Nostoc sp. PCC 7120] Length = 425 Score = 362 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 139/412 (33%), Positives = 215/412 (52%), Gaps = 38/412 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + ++++ E+++ R V + + +++ K R + + VE++ + Sbjct: 9 LKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P +G V + P +FGR+A Sbjct: 69 EEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + ++ + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + Q RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIIT---------EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 DI + + R K E ++ +E L E F Sbjct: 369 DIKDKAKYDQVAEDAKFVAARAKYQLEEDDIESDELDYEENQQGELEDESFD 420 >gi|260187857|ref|ZP_05765331.1| transcription elongation factor NusA [Mycobacterium tuberculosis CPHL_A] gi|289448503|ref|ZP_06438247.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] gi|289421461|gb|EFD18662.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] Length = 347 Score = 362 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 199/345 (57%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKDGQNARLAARLTGWRIDIRGDA 327 >gi|15609978|ref|NP_217357.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Rv] gi|31794018|ref|NP_856511.1| transcription elongation factor NusA [Mycobacterium bovis AF2122/97] gi|121638721|ref|YP_978945.1| transcription elongation factor NusA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662682|ref|YP_001284205.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|148824031|ref|YP_001288785.1| transcription elongation factor NusA [Mycobacterium tuberculosis F11] gi|167967194|ref|ZP_02549471.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|215404813|ref|ZP_03416994.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|215412673|ref|ZP_03421391.1| transcription elongation factor NusA [Mycobacterium tuberculosis 94_M4241A] gi|215431783|ref|ZP_03429702.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|215447095|ref|ZP_03433847.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|218754589|ref|ZP_03533385.1| transcription elongation factor NusA [Mycobacterium tuberculosis GM 1503] gi|224991213|ref|YP_002645902.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253798073|ref|YP_003031074.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 1435] gi|254232936|ref|ZP_04926263.1| N utilization substance protein A nusA [Mycobacterium tuberculosis C] gi|254365487|ref|ZP_04981532.1| N utilization substance protein A nusA [Mycobacterium tuberculosis str. Haarlem] gi|254551905|ref|ZP_05142352.1| transcription elongation factor NusA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260206152|ref|ZP_05773643.1| transcription elongation factor NusA [Mycobacterium tuberculosis K85] gi|289553371|ref|ZP_06442581.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 605] gi|289575542|ref|ZP_06455769.1| N utilization substance protein A nusA [Mycobacterium tuberculosis K85] gi|289746639|ref|ZP_06506017.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|289754949|ref|ZP_06514327.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|289758961|ref|ZP_06518339.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|289763017|ref|ZP_06522395.1| N utilization substance protein A nusA [Mycobacterium tuberculosis GM 1503] gi|294994068|ref|ZP_06799759.1| transcription elongation factor NusA [Mycobacterium tuberculosis 210] gi|297635454|ref|ZP_06953234.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN 4207] gi|297732453|ref|ZP_06961571.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN R506] gi|298526309|ref|ZP_07013718.1| N utilization substance protein A nusA [Mycobacterium tuberculosis 94_M4241A] gi|306777125|ref|ZP_07415462.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu001] gi|306781031|ref|ZP_07419368.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu002] gi|306785669|ref|ZP_07423991.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu003] gi|306789709|ref|ZP_07428031.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu004] gi|306794342|ref|ZP_07432644.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu005] gi|306798766|ref|ZP_07437068.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu006] gi|306804612|ref|ZP_07441280.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu008] gi|306807354|ref|ZP_07444022.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu007] gi|306968905|ref|ZP_07481566.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu009] gi|306973241|ref|ZP_07485902.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu010] gi|307080950|ref|ZP_07490120.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu011] gi|307085545|ref|ZP_07494658.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu012] gi|313659785|ref|ZP_07816665.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN V2475] gi|61229169|sp|P0A5M2|NUSA_MYCTU RecName: Full=Transcription elongation protein nusA gi|61229170|sp|P0A5M3|NUSA_MYCBO RecName: Full=Transcription elongation protein nusA gi|3261746|emb|CAB08449.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium tuberculosis H37Rv] gi|31619612|emb|CAD95051.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium bovis AF2122/97] gi|121494369|emb|CAL72850.1| Probable N utilization substance protein A nusA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601995|gb|EAY61005.1| N utilization substance protein A nusA [Mycobacterium tuberculosis C] gi|134151000|gb|EBA43045.1| N utilization substance protein A nusA [Mycobacterium tuberculosis str. Haarlem] gi|148506834|gb|ABQ74643.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|148722558|gb|ABR07183.1| N utilization substance protein A nusA [Mycobacterium tuberculosis F11] gi|224774328|dbj|BAH27134.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253319576|gb|ACT24179.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 1435] gi|289438003|gb|EFD20496.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 605] gi|289539973|gb|EFD44551.1| N utilization substance protein A nusA [Mycobacterium tuberculosis K85] gi|289687167|gb|EFD54655.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|289695536|gb|EFD62965.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|289710523|gb|EFD74539.1| N utilization substance protein A nusA [Mycobacterium tuberculosis GM 1503] gi|289714525|gb|EFD78537.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|298496103|gb|EFI31397.1| N utilization substance protein A nusA [Mycobacterium tuberculosis 94_M4241A] gi|308214494|gb|EFO73893.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu001] gi|308326139|gb|EFP14990.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu002] gi|308329669|gb|EFP18520.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu003] gi|308333808|gb|EFP22659.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu004] gi|308337334|gb|EFP26185.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu005] gi|308340977|gb|EFP29828.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu006] gi|308346277|gb|EFP35128.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu007] gi|308348792|gb|EFP37643.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu008] gi|308353518|gb|EFP42369.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu009] gi|308357359|gb|EFP46210.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu010] gi|308361312|gb|EFP50163.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu011] gi|308364913|gb|EFP53764.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu012] gi|323718540|gb|EGB27710.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CDC1551A] gi|326904454|gb|EGE51387.1| N utilization substance protein A nusA [Mycobacterium tuberculosis W-148] gi|328457846|gb|AEB03269.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 4207] Length = 347 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 199/345 (57%), Gaps = 31/345 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 327 >gi|68172039|ref|ZP_00545325.1| Transcription termination factor NusA, C-terminal duplication [Ehrlichia chaffeensis str. Sapulpa] gi|67998537|gb|EAM85305.1| Transcription termination factor NusA, C-terminal duplication [Ehrlichia chaffeensis str. Sapulpa] Length = 318 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 148/332 (44%), Positives = 232/332 (69%), Gaps = 14/332 (4%) Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +KA++RDPGSR+K+A Sbjct: 1 RVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTIKAIARDPGSRSKVA 60 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F++NA+ PA V KV+ Sbjct: 61 VFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKFIVNAIAPAEVLKVI 120 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E +S + K+ + ++ Sbjct: 121 IDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDETESSRKAKELSAGSK 180 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A E++ RA +YL Sbjct: 181 IFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAEELKSRAADYLVRK 240 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D +++ + L V +++ +P + +AL +NGI ++ED+AG D+ Sbjct: 241 DAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLCTDEFFD-------- 292 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + + KDQV+S+I+ +R K+GW+ Sbjct: 293 ------IIPDIALTKDQVDSVILESRKKIGWL 318 >gi|225016950|ref|ZP_03706142.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum DSM 5476] gi|224950264|gb|EEG31473.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum DSM 5476] Length = 412 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 141/379 (37%), Positives = 227/379 (59%), Gaps = 9/379 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + +A EK I + ++ ++++I A + +G + ++ V I+P T + + Sbjct: 2 NNEFFDALEMIAKEKGISMEYLIEKISNAITIAVKKDFGGIENVNVVIDPLTRRYKVSII 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EVE+ +I + A +G V L FGR+A Q+AK VI Q +REA Sbjct: 62 KTVVREVEDPVNEILIDEALKYSKRAMVGEPVEIKLETKQFGRIAAQTAKHVIRQGIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ER++ + DKVGE+I+ TV +++ GNVIV++ S+ ++ ++E + ++L PGD+VK Sbjct: 122 EREQMLAQMGDKVGEVITATVSKIDPTNGNVIVEIDKSEVILFKNEQLPTDHLLPGDKVK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DV ++ + +SRTH + +LF +EVPEI++G V+VK++SR+ GSR K+AV+S Sbjct: 182 VYVVDVMASEKRCSLKISRTHKDLVKRLFEIEVPEIFDGTVEVKSISREAGSRTKIAVYS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302 D ++DP+GAC+G +G RV ++ EL EKID+V +S D A F+ AL PA V +V L D Sbjct: 242 KDENVDPIGACIGPKGMRVGNIIDELGGEKIDVVKYSEDPAKFIAEALSPATVVEVQLSD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI------ITEEEDSINRQKDFN 356 + V VP QLSLAIG +GQN +LA++LTG+ IDI EE+ +Q+ Sbjct: 302 DGEKIAFVSVPDHQLSLAIGNKGQNAKLAARLTGYKIDISPESGFYGEEKRLAAKQEPKE 361 Query: 357 ERTQFFMQAINVDEIIAHL 375 + + Q + DE+++ + Sbjct: 362 DAEEAEQQELPEDEVVSDV 380 >gi|328955634|ref|YP_004372967.1| NusA antitermination factor [Coriobacterium glomerans PW2] gi|328455958|gb|AEB07152.1| NusA antitermination factor [Coriobacterium glomerans PW2] Length = 411 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ + EK ID+ ++ + S+ K+ + V I+ TG + ++ L+ Sbjct: 4 KMMDALMELCQEKHIDQLYLIDCLEQSLSKSYADILHLEYGAEVTIDRATGKVYVYELVP 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 E E + + + P D R+A Q AK I VR + R Sbjct: 64 KGEPDEE---------------TGEYTEFDKKDVTPKDTSRIAAQHAKAEINAIVRNSAR 108 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 ++ Y EF D++G+II+GTV + IV + + + R+E + E Sbjct: 109 EQIYEEFSDRIGDIITGTVLQSTPDFTIVKIREGVEAELPHFDLRRFENERNERPAGERY 168 Query: 177 RPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R+K+ I DVR E+ P +++SRTHP + +LF +EVPEIY G V+V Sbjct: 169 MHNQRLKAVIIDVRDPNSTMQPQRGERSRPPIVISRTHPALIKRLFELEVPEIYEGTVEV 228 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG R+K+AV S D +DPVGACVG +GSRV+ VV ELR E++D+++W D + F Sbjct: 229 KSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRTVVGELRGERVDVILWDADPSVF 288 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA V++V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI E Sbjct: 289 VANALSPAKVSRVLIDEEKSYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKNET 347 >gi|261749099|ref|YP_003256784.1| transcription elongation factor NusA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497191|gb|ACX83641.1| transcription elongation factor NusA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 419 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 121/415 (29%), Positives = 225/415 (54%), Gaps = 11/415 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++R V Sbjct: 6 LIDSFSVFKDEKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRNRIV 65 Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V++ V++ +I L AR + +IG V++ + GR A+ S +Q ++ K+ E + Sbjct: 66 VQDGTVKDVNKEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSKINEYD 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSY 185 Y +FK+K+GEII+ V + +I+ D ++ V+ + E I + R GD V++ Sbjct: 126 NTNIYKKFKNKIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGDPVRAL 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + P +L+R F+ +LF +E+PE+ G++ VK V+R PG +AK++V S D Sbjct: 186 VKRVDWKDNKPLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVSVDSYD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+GACVGM+GSR+ +V EL++E ID++ ++ + ++ AL PA V+ + ++E+ Sbjct: 246 DRIDPIGACVGMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMMEVNEEH 305 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V V E++S AIGR GQN+RLASQLTG+ I I + + + F Sbjct: 306 KYVNVYVKLEEISKAIGRGGQNIRLASQLTGYKIHIFRD------FPYEDDVELTEFSD- 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 ++ + G + + + ++++ +E+ ++ ++ E Sbjct: 359 -EIEPEVLERFHKVGLTTAKSVLNYRNNDLSKRTNLEEKIINKVVSILKKEFEEE 412 >gi|332665272|ref|YP_004448060.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100] gi|332334086|gb|AEE51187.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100] Length = 416 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 138/406 (33%), Positives = 222/406 (54%), Gaps = 9/406 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR + V+ D + + +G+ + V +N + GD+ L+R+ E+V EV + Sbjct: 14 KNIDRPTMARVLEDVFRTLIKKKFGSDDNFNVIVNTQNGDLELWRVREIVPDGEVTDDRA 73 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QIS+ A D +IG + L DFGR A+ +A+Q +I ++ E E+D Y + ++ Sbjct: 74 QISISEALAIDEDYEIGEECYERLQLEDFGRRAIMAARQTLISRIMELEKDEVYKSYSER 133 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGE+I G + ++ +V D ++ V+ R ETI + R GD VK I V Sbjct: 134 VGEVIVGEIHQILKKEFLVVDDATGNELVLPRTETIKADFFRKGDMVKGIIRRVELRNNT 193 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P V++SRT F+ KL EVPEI +G++ +K + R PG RAK+AV S D IDPVGACV Sbjct: 194 PIVVMSRTDNAFLEKLLEAEVPEIEDGLISIKKIVRLPGERAKVAVESYDDRIDPVGACV 253 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL +E IDIV ++ +++ ++ AL PA VT++ L+ + +V + E Sbjct: 254 GMKGSRIHGIVRELNNENIDIVNYTNNASLYIQRALTPAKVTRIELNTETNHADVYLEPE 313 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375 Q+SLAIG+ G N++LASQLTG+ ID+ ++ + + F +++ I Sbjct: 314 QVSLAIGKSGTNIKLASQLTGYEIDVYR---NNTEEYEIDDVDLDEFGD--EIEDWIIDA 368 Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 L A G + + +E+ +EET ++ E + Sbjct: 369 LQAIGCDTARSVLNLSKAELLRRTDLEEETIDDVLRVLSAEFEEGE 414 >gi|325677914|ref|ZP_08157556.1| transcription termination factor NusA [Ruminococcus albus 8] gi|324110468|gb|EGC04642.1| transcription termination factor NusA [Ruminococcus albus 8] Length = 372 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 206/354 (58%), Gaps = 22/354 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + E IDR+V++ + D+I KA + G+ ++RV+I+P TG + ++ L EV Sbjct: 5 FFNALADLVSENEIDREVLIEKIRDAITKAIKKETGSE-NVRVDIDPATGKLEMYILKEV 63 Query: 69 --VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V V+ +I + A+ DP I +G V P+ P GRVA Q AKQ I +++ E Sbjct: 64 MKVMFVDEPENEIYIGEAQAYDPDIKVGDFVEIPVNPAKIGRVAAQFAKQSIKHDIKDFE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 R++ ++KD+ EI++ TV++VE GN I+ + ++ R E I E L+ GD++K Sbjct: 124 RNKLIEQYKDREHEIVTATVQKVEPATGNAIITIDKNEHYFYRSEQIPGEVLKEGDKIKV 183 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI + E+R P V LSRTH + +LF +EVPEI +G V+VKA+SR G R+K+AV+S Sbjct: 184 YIVSLGDSEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEVKAISRTEGVRSKIAVWS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D ++D VGAC+G + SR+ AV EL+ EKID++ W D F+ AL PA V KV L E Sbjct: 244 KDPNVDAVGACIGPKKSRITAVCQELKGEKIDVINWVEDEEQFIAKALAPAEVLKVELLE 303 Query: 304 DV----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V+VP Q SLAIG +GQN +LA+ LTG+ IDI Sbjct: 304 PEVRIEHKGEEKEFERVIKKCRVVVPNNQFSLAIGNKGQNAKLAAGLTGYKIDI 357 >gi|152991227|ref|YP_001356949.1| transcription elongation factor NusA [Nitratiruptor sp. SB155-2] gi|151423088|dbj|BAF70592.1| transcription termination factor NusA [Nitratiruptor sp. SB155-2] Length = 371 Score = 361 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 125/345 (36%), Positives = 200/345 (57%), Gaps = 9/345 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I D++A+EK + + V + + + A+ + G + EI+P+T I +F+ + Sbjct: 3 KIVDIIDSIAHEKGLPVEQVKEAIQKAFENTAKKVLGEDLEFEAEIDPDTKSIKVFQKIL 62 Query: 68 VVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ + Q I+L A++ DP++++G + P+ GR A I + Sbjct: 63 VVEDGDERATQEPERYITLSEAKEIDPNVEVGDELRYPVEFEKLGRTAAMRLHNEIEFHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + + ++K ++G IISGTV RV E N V++ G++ + I E +PGD Sbjct: 123 QRLMEQQLFEKYKQRIGTIISGTVTRVDEEENTYVEIDEVKGILPKRYRIKGEFFKPGDV 182 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+ + V ++ G + LSRT P+F+ +L +EVPEI +G+V ++ V+R PG RAK+A Sbjct: 183 VKAILKRVVFDKINGIYLELSRTTPKFLEELLKLEVPEIKDGLVTIEKVARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S IDPVGACVG+RG R+ AV ELR E ID + +SP FV +L PAI+T V Sbjct: 243 VNSHSPKIDPVGACVGVRGVRINAVSKELRGENIDCIEYSPIPEIFVARSLSPAIITSVK 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 ++ + V +P +Q S AIG+ G N+RLAS LTG+ I++I E Sbjct: 303 IE--GDKAIVTLPSDQKSKAIGKSGINIRLASMLTGYEIELIETE 345 >gi|255326386|ref|ZP_05367470.1| transcription termination factor NusA [Rothia mucilaginosa ATCC 25296] gi|255296603|gb|EET75936.1| transcription termination factor NusA [Rothia mucilaginosa ATCC 25296] Length = 365 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 210/390 (53%), Gaps = 38/390 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+A ++S+ + + +++ +++ A G + R I+ TG+ + Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G ++SG +++ V VDLG + V+ +E + E G R+++Y+ + Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGTVEAVLPSNEQVPGEKYPHGSRLRAYLVE 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR +GP +++SR+HP +++LF EVPEI G+V + +++R+ G R+K+AV + + +I Sbjct: 167 ARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVSINSIAREAGHRSKIAVSAKNPTI 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D ATF+ AL PA VT+V++ + Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREYS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +VP +QLSLAIGR GQN RLA++LTGW IDI++E + + R ++ Sbjct: 287 ARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEE------------E 334 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIAS 397 V +A L E A E+ E A Sbjct: 335 VAARVARSLAEE--ASAEKAIEEATEESAQ 362 >gi|88855366|ref|ZP_01130030.1| transcription elongation factor NusA [marine actinobacterium PHSC20C1] gi|88815273|gb|EAR25131.1| transcription elongation factor NusA [marine actinobacterium PHSC20C1] Length = 333 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 120/346 (34%), Positives = 192/346 (55%), Gaps = 32/346 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--------TMSDIRVEINPETGDIS 61 L + + E+ I + ++ ++ +I A T RV ++ +TG +S Sbjct: 5 LSVLRMMEREREIPFEELVQIIEQAIMSAYLKHVEAPEGKAAETAPTARVVLDRKTGHVS 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ + D I G D P DFGR+A +AKQVI Q+ Sbjct: 65 VW--------------------VPEYDDEGAIVGEAED--SPSDFGRIAAFAAKQVINQR 102 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +R+ D+ EFK + G+I++G +++ + +DLG + ++ +E + E + G Sbjct: 103 LRDIGDDKVLGEFKGREGDIVAGVIQQGPNPRMIHIDLGTVEAIMPPEEQVPSEEYKHGS 162 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V + +GPQ+ +SRTHP + KLF +EVPEI +GIV++ +V+R+ G R K+A Sbjct: 163 RLRVYVTAVNKGDKGPQITVSRTHPSLVRKLFALEVPEIASGIVEITSVAREAGHRTKMA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKV 299 V +++ ++ G+C+G G RV+AV EL +EKIDIV +S + A FV NAL PA V + Sbjct: 223 VRATEPGVNAKGSCIGELGQRVRAVTAELNNEKIDIVDYSENLAVFVANALSPAKVSSSF 282 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+DE + +VP QLSLAIG+ GQN RLA++LTG IDI + Sbjct: 283 VIDETTKAVRALVPDYQLSLAIGKEGQNARLAAKLTGARIDIQPDS 328 >gi|302335788|ref|YP_003800995.1| transcription termination factor NusA [Olsenella uli DSM 7084] gi|301319628|gb|ADK68115.1| transcription termination factor NusA [Olsenella uli DSM 7084] Length = 414 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 193/359 (53%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ A+ EK ID ++ + S+ K+ + RV I+ TG + ++ Sbjct: 4 EMMEALMALCQEKHIDELYLIDRLEQSLAKSYAEILHLDFGARVTIDRATGRVYVY--KL 61 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E N D + + + P D R+A Q AK I + VR + R Sbjct: 62 VPEGDIN-------------DETGEFDNFEEVDVTPKDASRIAAQHAKSEIAEIVRNSAR 108 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 + + EF +VG+II+GTV + + + + + R+E E Sbjct: 109 QQIFEEFSQRVGDIITGTVLQTTPDFAFIKIREGVEAELPYFDQRRYPDERNERPVGERY 168 Query: 177 RPGDRVKSYIYDVRREQRG----------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R+++ I DVR P +++SRTHP + +LF +EVPE+Y G+V+V Sbjct: 169 IHNQRIRAIIVDVRDPNSNQPPIRGERQRPSIVVSRTHPDLIRRLFELEVPEVYEGVVEV 228 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 ++V+R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V+WS D + Sbjct: 229 RSVAREAGVRSKVAVSSLDDRLDPVGACVGPKGSRVRTVVSELRGERVDVVLWSDDPSRC 288 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI E Sbjct: 289 VANALSPARVSRVIVDPENNYATVIVPDDQLSLAIGKEGQNARLAARLTGMHIDIKNES 347 >gi|262340805|ref|YP_003283660.1| transcription elongation factor NusA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272142|gb|ACY40050.1| transcription elongation factor NusA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 417 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 125/405 (30%), Positives = 227/405 (56%), Gaps = 11/405 (2%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYT 76 EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++R VV+ EV++ Sbjct: 16 EKNIDRVSLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRNRIVVQDGEVKDIN 75 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I L +AR +P +IG V++ + GR A+ S +Q ++ K+ E + Y +FK+ Sbjct: 76 KEIELSIARKIEPDFEIGEEVTEKVELQSLGRRAILSLRQNLLSKINEYDNTNTYKKFKN 135 Query: 137 KVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+GEII+ V + +I+ D ++ V+ + E I + R GD V++ + V + Sbjct: 136 KIGEIINVEVYHILSKQIIMRDEEQNEMVLPKQEQIPSDFFRKGDPVRALVKRVDWKDNK 195 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P +L+R F+ +LF +E+PE+ +G++ VK V+R PG +AK+AV S D IDPVGACV Sbjct: 196 PFAILTRRDEAFLEELFKLEIPEVSDGLITVKKVARIPGEKAKVAVESYDDRIDPVGACV 255 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL++E ID++ ++ ++ ++ AL PA V+ + ++ED + V V E Sbjct: 256 GMKGSRIHPIVRELKNENIDVINYTSNTQLYITRALSPAKVSMMEVNEDHKYVNVYVKLE 315 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375 ++S AIGR GQN+RLASQLTG+ I I + + + F ++ + Sbjct: 316 EISRAIGRGGQNIRLASQLTGYKIHIFRD------FPYEDDVELTEFSD--EIEPEVLER 367 Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 G + + + ++++ +E+ ++ ++ E Sbjct: 368 FHKVGLNTAKSILNYRKNDLSKRTNLEEKIINKVVSILKKEFEEE 412 >gi|218282331|ref|ZP_03488621.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989] gi|218216704|gb|EEC90242.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989] Length = 536 Score = 360 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 216/343 (62%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + ++ + +D+V + +++ KA R +++V ++ G I ++ Sbjct: 9 DLAKALQGIESDRQLSKDIVEDALKEALTKAYRRHIDI-PEVQVRVDIVDGTIHIYHERV 67 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ ++ L ++ +P+I IG +V + + DF R AV AK V+ QK+REAE+ Sbjct: 68 VVEEVEDDELEVQLDEIQNENPNIKIGDIVDEEVDFKDFDRAAVVLAKNVMKQKIREAEK 127 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ DKV E++ GT++ VE VIV++G + V+++ I E+ + GD + I Sbjct: 128 AQVYEEYCDKVDEMVLGTIETVEEKFVIVNIGKTLAVMKKSAQIPTEHYKEGDNILVVIT 187 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++R+ G R K+AV+S + + Sbjct: 188 EVNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIAREAGERCKIAVYSHNEN 247 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG- 306 IDP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E V Sbjct: 248 IDPIGACIGPRGSRVQTIIEELNGEKIDIFEWSDNISELIANALSPSTGVAVIPNETVKD 307 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 + V+VP QLSLAIG+RG+N RLA +LT IDI +E E Sbjct: 308 GLIVVVPDNQLSLAIGKRGKNARLAVKLTNHKIDIKSESEMQE 350 >gi|56752082|ref|YP_172783.1| transcription elongation factor NusA [Synechococcus elongatus PCC 6301] gi|56687041|dbj|BAD80263.1| N utilization substance protein A [Synechococcus elongatus PCC 6301] Length = 441 Score = 360 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 206/370 (55%), Gaps = 30/370 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTM--SDI 49 MV+ LE Q+ A++ +K + +V+ + +++ K + +I Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60 Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107 VE++ E + +V +VEN QI+L ++ P G +V + P DFG Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------S 161 R+A KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEV 180 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIY 220 + + R E + +N R + ++ +V E R GPQ+++SR + +V LF EVPEI Sbjct: 181 EAELPRREQLPNDNYRANATFRVFLKEVSEEPRRGPQLIVSRANAGLVVYLFENEVPEIQ 240 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 241 DGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEK 300 Query: 274 IDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WSPD AT++ NAL PA V +V ++D + V+V +QLSLAIG+ GQNVRLA+ Sbjct: 301 IDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAA 360 Query: 333 QLTGWTIDII 342 +LTGW IDI Sbjct: 361 RLTGWKIDIK 370 >gi|283458507|ref|YP_003363135.1| transcription elongation factor [Rothia mucilaginosa DY-18] gi|283134550|dbj|BAI65315.1| transcription elongation factor [Rothia mucilaginosa DY-18] Length = 365 Score = 360 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 210/390 (53%), Gaps = 38/390 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+A ++S+ + + +++ +++ A G + R I+ TG+ + Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G ++SG +++ V VDLG + V+ +E + E G R+++Y+ + Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGTVEAVLPSNEQVPGEKYPHGSRLRAYLVE 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR +GP +++SR+HP +++LF EVPEI G+V + +++R+ G R+K+AV + + +I Sbjct: 167 ARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVAINSIAREAGHRSKIAVSAKNPTI 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D ATF+ AL PA VT+V++ + Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREYS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +VP +QLSLAIGR GQN RLA++LTGW IDI++E + + R ++ Sbjct: 287 ARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEE------------E 334 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIAS 397 V +A L E A E+ E A Sbjct: 335 VAARVARSLAEE--ASAEKAIEEATEESAQ 362 >gi|119511041|ref|ZP_01630161.1| transcription elongation factor NusA [Nodularia spumigena CCY9414] gi|119464292|gb|EAW45209.1| transcription elongation factor NusA [Nodularia spumigena CCY9414] Length = 423 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 31/371 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SD 48 MVS L+ ++ ++++ E+++ R V + + +++ K + + + Sbjct: 1 MVSLPGLK--ELIESISRERNLPRLAVQTAIREALLKGYERYRRAQNLEKRQFDEEYFDN 58 Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DF 106 VE++ E + +VE V+N QISL+ + P +G V + P +F Sbjct: 59 FEVELDIEGEGFRVLSTKSIVEAVDNTDHQISLEEVQQVAPEAQLGDSVVLDVTPDQGEF 118 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------ 160 GR+A KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + Sbjct: 119 GRMAAMQTKQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVASGFGQPE 178 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEI 219 + + + E + +N R K Y+ V + Q RGPQ+L+SR +V LF EVPEI Sbjct: 179 VEAELPKREQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEI 238 Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 + +V++ AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR E Sbjct: 239 EDEVVRIVAVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGE 298 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 KID++ WSPD +T++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA Sbjct: 299 KIDVIRWSPDPSTYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLA 358 Query: 332 SQLTGWTIDII 342 ++LTGW IDI Sbjct: 359 ARLTGWKIDIK 369 >gi|170782217|ref|YP_001710550.1| transcription elongation factor NusA [Clavibacter michiganensis subsp. sepedonicus] gi|169156786|emb|CAQ01949.1| transcription elongation protein NusA [Clavibacter michiganensis subsp. sepedonicus] Length = 335 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 119/347 (34%), Positives = 188/347 (54%), Gaps = 33/347 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDI 60 L + + E+ I + ++S++ +I A RV ++ ++G + Sbjct: 5 LSVLRLMEREREIPFEELVSIIEQAILTAYLKHTDQADAKPVADGVPPARVHLDRKSGHV 64 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ V E++ I P DFGR+A +A+QVI Q Sbjct: 65 SVH-----VPELDEDGLVIG-----------------ESEDSPSDFGRIAAFAARQVINQ 102 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 ++R+ DR EFK + G+I++G +++ + VDLG + ++ +E + E G Sbjct: 103 RLRDIGDDRILGEFKGREGDIVAGVIQQGPNPRMIHVDLGTIEAILPPEEQVPGEKYVHG 162 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI +G+V++ +++R+ G R K+ Sbjct: 163 SRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIASGLVEIVSLAREAGHRTKI 222 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TK 298 AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S FV NAL PA V + Sbjct: 223 AVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSESLPVFVGNALSPARVTSS 282 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+D+ + +VP QLSLAIG+ GQN RLA++LTG IDI + Sbjct: 283 FVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDS 329 >gi|221195874|ref|ZP_03568927.1| transcription termination factor NusA [Atopobium rimae ATCC 49626] gi|221184348|gb|EEE16742.1| transcription termination factor NusA [Atopobium rimae ATCC 49626] Length = 415 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 192/359 (53%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK ID +L + S+ K+ + RV I+ TG + ++ E Sbjct: 4 EMMEALMTLCQEKHIDELYLLDRLEQSLAKSYADVLHLSYGARVTIDRTTGKVYVY---E 60 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V + E + + + + P R A Q AK I VR+A R Sbjct: 61 LVPKGE-PDEE-----------TGEYAEFDEVDVTPEGTSRFAAQHAKNEIRALVRDAAR 108 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 + Y EF ++G+II+GTV + I+ + + + RDE E Sbjct: 109 QQIYEEFSHRIGDIITGTVLQSTPDFTIIKIREGVEAELPHFDLRRFPEERDERPFGERY 168 Query: 177 RPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R+K+ I DVR P +++SRTHP + +LF +EVPE+Y GIV + Sbjct: 169 GHNQRIKAIIIDVRNPNNAQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYEGIVSI 228 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 ++V+R+PG R+K+AV SSD +DPVGACVG +GSRV+ VV+ELR E++D+V W D A Sbjct: 229 RSVAREPGIRSKIAVSSSDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDPARC 288 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V +AL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI E Sbjct: 289 VASALSPARVSRVIIDAETRHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKNET 347 >gi|51599052|ref|YP_073240.1| transcription elongation factor NusA [Borrelia garinii PBi] gi|51573623|gb|AAU07648.1| N-utilization substance protein A [Borrelia garinii PBi] Length = 482 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 137/465 (29%), Positives = 256/465 (55%), Gaps = 19/465 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIREL 431 ++ E F D+ +++ +K+ + + I +E +I +A E + +K E+ Sbjct: 365 DVVEEEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEI 424 Query: 432 G----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E S+ ++ ++ E G+ E++ C Sbjct: 425 NKILKEGMIIIANENDESMEKVEEDQELLCPECGVVINENMTSCP 469 >gi|203288228|ref|YP_002223243.1| N-utilization substance protein A [Borrelia recurrentis A1] gi|201085448|gb|ACH95022.1| N-utilization substance protein A [Borrelia recurrentis A1] Length = 494 Score = 359 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 136/427 (31%), Positives = 245/427 (57%), Gaps = 15/427 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+ Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I + A+ + V + P F R+++Q AKQ ++ E + Sbjct: 80 EVKNNVMEILVDDAKTF--EVVDNEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D Sbjct: 198 KGRNGIEVILSRTHPKFIAELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V ++DED+ + Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDTFEM----FD 373 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 +II +V+E +I++I+ ++ D++ ++ R + ++ + K+ Sbjct: 374 KIIQD--------NVQEDEFEEINKISELKVLDDDIVAKLIQRDLDDIDNFLNASEDKLF 425 Query: 430 ELGVSEE 436 ELG++ E Sbjct: 426 ELGITYE 432 >gi|203284696|ref|YP_002222436.1| N-utilization substance protein A [Borrelia duttonii Ly] gi|201084139|gb|ACH93730.1| N-utilization substance protein A [Borrelia duttonii Ly] Length = 494 Score = 359 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 136/427 (31%), Positives = 245/427 (57%), Gaps = 15/427 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+ Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I + A+ + V + P F R+++Q AKQ ++ E + Sbjct: 80 EVKNNVMEILVDDAKTF--EVVDNEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D Sbjct: 198 KGRNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V ++DED+ + Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDTFEM----FD 373 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 +II +V+E +I++I+ ++ D++ ++ R + ++ + K+ Sbjct: 374 KIIQD--------NVQEDEFEEINKISELKVLDDDIVAKLIQRDLDDIDNFLNASEDKLF 425 Query: 430 ELGVSEE 436 ELG++ E Sbjct: 426 ELGITYE 432 >gi|86133947|ref|ZP_01052529.1| transcription elongation protein NusA [Polaribacter sp. MED152] gi|85820810|gb|EAQ41957.1| transcription elongation protein NusA [Polaribacter sp. MED152] Length = 418 Score = 359 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 132/409 (32%), Positives = 227/409 (55%), Gaps = 18/409 (4%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYTC 77 KSIDR ++S++ + + A + +G+ + + INP+ GD+ ++R VV + E+ Sbjct: 17 KSIDRVTLMSILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIWRNRVVVADGFSEDDNE 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L AR +P +IG VS+ + +D GR A+ + +Q +I K+ E + + +FKD Sbjct: 77 EIELSEARKIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISKIYEHDSTNIFKQFKDL 136 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 GE+ S V + + +I+ D ++ V+ + E I + R GD V+ I V P Sbjct: 137 EGELFSAEVHHIRHNAIILLDDEGNEIVLPKSEQIRSDFFRKGDNVRGVIKTVELRGNKP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+AV S D IDPVGACVG Sbjct: 197 AIILSRTSPAFLNKLFEQEIPEVFDGLITVEGVARIPGEKAKVAVDSYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-------DEDVGRIE 309 ++GSR+ +V EL +E ID++ ++ + F+ AL PA VT + + + GR+ Sbjct: 257 VKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSMEITMYEEEKNGKKGRVS 316 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V++ E++S AIGR G N+RLAS+LTG+ ID+ E ++ + F+ ++ Sbjct: 317 VLLKPEEVSKAIGRGGVNIRLASELTGYEIDVQRE------GLEEEDVELTEFID--EIE 368 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + + G + ++E+ +EET +++Q +E E Sbjct: 369 DWVITEFKKIGLDTARSVLETSVAELVKRTDLEEETIIDVQRILKEEFE 417 >gi|81300831|ref|YP_401039.1| transcription elongation factor NusA [Synechococcus elongatus PCC 7942] gi|81169712|gb|ABB58052.1| NusA antitermination factor [Synechococcus elongatus PCC 7942] Length = 441 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 131/370 (35%), Positives = 206/370 (55%), Gaps = 30/370 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTM--SDI 49 MV+ LE Q+ A++ +K + +V+ + +++ K + +I Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60 Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107 VE++ E + +V +VEN QI+L ++ P G +V + P DFG Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------S 161 R+A KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEV 180 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + + R E + +N R + ++ +V +RGPQ+++SR + +V LF EVPEI Sbjct: 181 EAELPRREQLPNDNYRANATFRVFLKEVSEVPRRGPQLIVSRANAGLVVYLFENEVPEIQ 240 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 241 DGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEK 300 Query: 274 IDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WSPD AT++ NAL PA V +V ++D + V+V +QLSLAIG+ GQNVRLA+ Sbjct: 301 IDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAA 360 Query: 333 QLTGWTIDII 342 +LTGW IDI Sbjct: 361 RLTGWKIDIK 370 >gi|75908091|ref|YP_322387.1| transcription elongation factor NusA [Anabaena variabilis ATCC 29413] gi|75701816|gb|ABA21492.1| NusA antitermination factor [Anabaena variabilis ATCC 29413] Length = 425 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 138/418 (33%), Positives = 225/418 (53%), Gaps = 34/418 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + ++++ E+++ R V + + +++ K R + + VE++ + Sbjct: 9 LKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P +G V + P +FGR+A Sbjct: 69 EEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + ++ + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + Q RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEE--EDSINRQKDFNERTQFFMQAINVD-EIIAHLLVAEGFADVEELACVKISE 394 DI + + + K R ++ ++ +++ E + + EG ++E+ + E Sbjct: 369 DIKDKAKYDQAAEDAKFVAARAKYQLEEDDIESEELDYEENQEG--ELEDESFDPNDE 424 >gi|261416680|ref|YP_003250363.1| NusA antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373136|gb|ACX75881.1| NusA antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327396|gb|ADL26597.1| N utilization substance protein A [Fibrobacter succinogenes subsp. succinogenes S85] Length = 407 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 145/375 (38%), Positives = 210/375 (56%), Gaps = 16/375 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + ++ LL + V +KS+D V+L + ++ AAR I V+I+ ET ++ Sbjct: 1 MKNEPKVNLLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEV 60 Query: 61 SLFRLLEVVEEVENYTCQIS-------------LKVARDRDPSIDIGGVVSDPLPPMDFG 107 +F +EVV++ +Y ++ + ARD + G + LP FG Sbjct: 61 HVFLNVEVVDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIR 166 R A+Q+AKQ++ Q +R AE R ++ ++G II+GTV R+E NVIVDLG + + Sbjct: 121 RQAIQTAKQLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELP 180 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E I E L G VK+ I V + G QV+LSR++ F+ L EVPEIY G V+ Sbjct: 181 AREQIPHERLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVE 240 Query: 226 VKAVSRDPG-SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +KAV+RD RAK+AV+S D IDPVGACVGM+G+RVQ +V EL +E+IDIV W + Sbjct: 241 IKAVARDSKNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFD 300 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV +L PA V K+ D RI +IV E L+ AIG+ GQNV LA +L +D+ E Sbjct: 301 VFVQRSLAPASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDVHGE 360 Query: 345 EEDSINRQKDFNERT 359 +E S ++ N Sbjct: 361 QEWSQMDEEAKNNIL 375 >gi|213964507|ref|ZP_03392707.1| transcription termination factor NusA [Corynebacterium amycolatum SK46] gi|213952700|gb|EEB64082.1| transcription termination factor NusA [Corynebacterium amycolatum SK46] Length = 328 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 130/346 (37%), Positives = 199/346 (57%), Gaps = 31/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + EK I D +L ++A +++++ R+ RVEI+ ETGD+ +F Sbjct: 5 LAALRTLEKEKGIPVDEMLGLVARALRESYRNTTAPAQYARVEIDRETGDVIVF------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++RD ++ D P DF R A + +Q I+ ++R+AE D+ Sbjct: 59 --------------AQERDDEGNLISEWDD--TPEDFERTAAFAVRQTILSRLRDAESDK 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 E+ D ++ISG V+R E G V+V +G DG++ E + E L+ GDR Sbjct: 103 VLDEYADLSNQVISGVVQRDVYANEKGIVVVHIGSEANGRDGILMPAEQLPGEELKHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + RG + LSRTHP+ + KLF +E+PE+ +G V++ +++R+ G R K+AV Sbjct: 163 IKCYVVGVNKTPRGVAIHLSRTHPELIRKLFELEIPEVADGAVELISIAREAGHRTKVAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 + ++ GAC+G RG RV +++ EL+ EKIDI+ + D A FV N+L PA V V + Sbjct: 223 RPTVKGLNAKGACIGPRGQRVSSIMNELKGEKIDIIDYDEDPAKFVGNSLAPAKVVSVKI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 LD D R V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 283 LDMDERRAHVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDAE 328 >gi|323356820|ref|YP_004223216.1| transcription elongation factor [Microbacterium testaceum StLB037] gi|323273191|dbj|BAJ73336.1| transcription elongation factor [Microbacterium testaceum StLB037] Length = 329 Score = 358 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 122/342 (35%), Positives = 187/342 (54%), Gaps = 28/342 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRL 65 L + + EK I D + ++ +I A +I R E++ +TG + +F Sbjct: 5 LALLKTIEREKEIPFDELARIIEQAILTAYAKHISPSGEIPAGARAELDRKTGHVGIF-- 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + E IG + P DFGR+A +AKQVI Q++R+ Sbjct: 63 -TPVTDEE----------------GAVIG---EEEQAPDDFGRIAAFAAKQVISQRLRDI 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 D EF+ K G+I++G V++ V VDLG + ++ +E + E G R++ Sbjct: 103 ADDAVLGEFRGKEGDIVAGVVQQGPNPRMVHVDLGTVEAILPPEEQVPGETYAHGSRLRV 162 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +GPQ+ +SRTHP + KLF +EVPEI G+V++ +++R+ G R+K+AV ++ Sbjct: 163 YVTSVSKGNKGPQITVSRTHPGLVRKLFALEVPEIAAGLVEIVSLAREAGHRSKIAVKAN 222 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKVVLDE 303 D +++ GAC+G G RV+AV EL EKIDI+ + + FV NAL PA V + VLD Sbjct: 223 DPTVNAKGACIGELGRRVRAVTEELAGEKIDIIDYDAELPRFVANALSPAKVTSSFVLDA 282 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +VP QLSLAIG+ GQN RLA++LTG IDI + Sbjct: 283 STKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDS 324 >gi|86609687|ref|YP_478449.1| transcription elongation factor NusA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558229|gb|ABD03186.1| transcription termination factor NusA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 457 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 207/373 (55%), Gaps = 28/373 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPET 57 L ++ + ++ E+++ R VV + +++ K + VE++ E Sbjct: 9 LAEMVEMISRERNLPRHVVTDALREALLKGYERYRKTIQRDVVFAEDHFRNFDVELDVEA 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 G + +VE+V+N +ISL + P ++G V+D + P +FGR+A K Sbjct: 69 GGFRVLATKAIVEQVQNPDHEISLYDVQQDYPEAEVGWEVTDDVTPQQAEFGRMAAIQTK 128 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRDE 169 QV+ QK+R+ +R EF+D ++ V R E VI+ + + + + + E Sbjct: 129 QVLAQKLRDQQRRLIQEEFRDLEKTVLQARVLRTERQTVIMSVSSGFGQPEVEAELPKKE 188 Query: 170 TISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 ++ + P +K Y+ V R GPQ+L+SR +V LF EVPEI IV++ A Sbjct: 189 QLASDRYTPNAVMKVYLKKVYEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVA 248 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSP Sbjct: 249 VAREANPPSRNVGPRTKIAVDTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSP 308 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D AT++ NAL PA V +V ++D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 309 DPATYIANALSPAKVVEVRLVDPEIQQAHVLVNSDQLSLAIGKEGQNVRLAARLTGWKID 368 Query: 341 IITEEEDSINRQK 353 I E ++ Sbjct: 369 IKEVESYRAALEE 381 >gi|219685679|ref|ZP_03540493.1| transcription elongation protein NusA [Borrelia garinii Far04] gi|219672795|gb|EED29820.1| transcription elongation protein NusA [Borrelia garinii Far04] Length = 482 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 137/465 (29%), Positives = 256/465 (55%), Gaps = 19/465 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIREL 431 ++ E F D+ +++ +K+ + + I +E +I +A E + +K E+ Sbjct: 365 DVVEEEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEI 424 Query: 432 G----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E S+ ++ ++ E G+ E++ C Sbjct: 425 NKILKEGMIIIANENDESMEKVEEDEELLCPECGVVINENMTSCP 469 >gi|323342029|ref|ZP_08082262.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464454|gb|EFY09647.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 536 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 155/493 (31%), Positives = 245/493 (49%), Gaps = 4/493 (0%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLF 63 N ++ + ++I +++++ + DS+ KA R G + + V I+ T ++ LF Sbjct: 2 NVKNVILAMQEIEDNRNISKEIIIDALQDSLIKAYRKQIGVPDALVDVIIDERTQEMKLF 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV + ++ + + + +G P ++ GR A AK VI QK+R Sbjct: 62 HKFLVVEEVMDDELEVGITELPEGAEGLQVGEYYMIEEPIVELGRAAATLAKNVIKQKIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAE+ Y E+ D++GE+I V+ VE V+++LG S V+ R I E R G +K Sbjct: 122 EAEKQAVYDEYIDQLGEMIMAMVESVEEKFVVLNLGKSLAVMPRAAQIEGETYREGQTLK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I DV R+ +G Q+L+SR + +LF EVPEI+ G V++KA++R+ G R K+AV+S Sbjct: 182 VVITDVNRDTKGAQILVSRADAMLVRRLFENEVPEIFEGQVEIKAIAREAGERTKIAVYS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DS IDP+GAC+G RGSRVQA++ EL+ EKIDI WS + + NAL PA V V + Sbjct: 242 HDSDIDPIGACIGPRGSRVQAIIEELKGEKIDIFEWSDNMVELINNALAPAEVIAVYPNA 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D + VIV QLSLAIG+RG+N RLA +LT IDI + E + + + Sbjct: 302 DNKGLVVIVDDNQLSLAIGKRGKNARLAVRLTKQRIDIKSVSEAEADGIDYVSLMAAYEA 361 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + + + + E E A V EI +E + A I +E + Sbjct: 362 EIR--SKQVQEEVNEELVVRTEVEATVDAEEIVEVEE-TADLAESIIEEVQEVEQTEVTD 418 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 + + + +EE +D K + + E LA S + + + Sbjct: 419 VVSEEIIIEETEESEEAIKLDRKDVFKPRTDYVSKFEQLADASRKEEQDLRRRRRKPERE 478 Query: 484 FDGFLSSLGTPKD 496 D +++ K+ Sbjct: 479 EDKPVNTSELLKE 491 >gi|216264195|ref|ZP_03436187.1| transcription elongation protein NusA [Borrelia burgdorferi 156a] gi|221217568|ref|ZP_03589037.1| transcription elongation protein NusA [Borrelia burgdorferi 72a] gi|225550297|ref|ZP_03771256.1| transcription elongation protein NusA [Borrelia burgdorferi 118a] gi|215980668|gb|EEC21475.1| transcription elongation protein NusA [Borrelia burgdorferi 156a] gi|221192514|gb|EEE18732.1| transcription elongation protein NusA [Borrelia burgdorferi 72a] gi|225369165|gb|EEG98619.1| transcription elongation protein NusA [Borrelia burgdorferi 118a] Length = 482 Score = 357 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 138/476 (28%), Positives = 254/476 (53%), Gaps = 43/476 (9%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + V+ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASI-----EGFDE-------------------ETAVEIQ 410 ++ E F ++ +++ +K+ + + I EG D+ E EI Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDINNFLQADEGALFNLGVSYEKQEEIN 425 Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E + I + + ++ EEL E G+ E++ C Sbjct: 426 KILKEGMIIIANDNDESMEKVEEDEELL------------CPECGVVINENMTSCP 469 >gi|224534126|ref|ZP_03674706.1| transcription elongation protein NusA [Borrelia spielmanii A14S] gi|224514551|gb|EEF84865.1| transcription elongation protein NusA [Borrelia spielmanii A14S] Length = 482 Score = 357 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 135/465 (29%), Positives = 257/465 (55%), Gaps = 19/465 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +IS K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SFFEISEKDISREN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ +AL P+ + V ++DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDALTPSKIEHVYIIDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIREL 431 ++ E F ++ +++ +K+ + + I +E +I +A E L +K E+ Sbjct: 365 DVVEEEQFEEISKISDLKLLDSSVISNLSKEGLDDINNFLQADEGLLFNLGVSYEKQEEI 424 Query: 432 G----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++ S+ + ++ E G+ E++ C Sbjct: 425 NKILKEGMIIIANDSGESMEKAEEDEELLCPECGVVINENMTSCP 469 >gi|327398877|ref|YP_004339746.1| NusA antitermination factor [Hippea maritima DSM 10411] gi|327181506|gb|AEA33687.1| NusA antitermination factor [Hippea maritima DSM 10411] Length = 360 Score = 357 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 132/344 (38%), Positives = 211/344 (61%), Gaps = 6/344 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+LQIA ++ E ID + V+ +A++++ A + YG +D+R+E + + +F + Sbjct: 3 EILQIAKKISEEHEIDLERVVEYLAEALKIAIQKKYGDEADVRIETDVDN---EIFDVYV 59 Query: 68 VVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VE QISL+ A+ P +G V + + GR+AV + K VI + +R+ Sbjct: 60 KKKVVEKPMLDSQISLEEAKAIKPDAKVGDYVEEKVDAKSLGRIAVTTIKNVITKLLRDI 119 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+ + Y E+K+ +G+II G V + NVIVD N+ GV+ + E + G+ +K+ Sbjct: 120 EKHKAYEEYKEYIGKIIVGEVWSIGSNNNVIVDFKNAIGVLPKREQGINDKYVVGEHIKA 179 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV E + +++LSRTHP F+ +LF EVPE+ G V++KAV+R+P R K+AV+S Sbjct: 180 YVLDVLEEAKQVRLILSRTHPGFVKELFKKEVPEVREGSVEIKAVAREPSRRTKVAVYSK 239 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DS IDP+G CVG +G R+ A+V EL DEKID++ WS D + ++ NA+ PA V V +DED Sbjct: 240 DSRIDPIGTCVGSKGVRIAAIVRELGDEKIDVIKWSADPSIYIRNAMSPAKVISVEIDED 299 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + + +V V + S+AIG+ G N +LA++LTG+ IDI + Sbjct: 300 LKKAKVYVDDAEYSMAIGKGGVNAKLAAKLTGYNIDIAKISDKE 343 >gi|15595145|ref|NP_212934.1| transcription elongation factor NusA [Borrelia burgdorferi B31] gi|218249928|ref|YP_002375299.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7] gi|223889315|ref|ZP_03623902.1| transcription elongation protein NusA [Borrelia burgdorferi 64b] gi|226321265|ref|ZP_03796793.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26] gi|3914177|sp|O51740|NUSA_BORBU RecName: Full=Transcription elongation protein nusA gi|2688748|gb|AAC67154.1| N-utilization substance protein A (nusA) [Borrelia burgdorferi B31] gi|218165116|gb|ACK75177.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7] gi|223885236|gb|EEF56339.1| transcription elongation protein NusA [Borrelia burgdorferi 64b] gi|226233297|gb|EEH32048.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26] Length = 482 Score = 357 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 138/476 (28%), Positives = 255/476 (53%), Gaps = 43/476 (9%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASI-----EGFDE-------------------ETAVEIQ 410 ++ E F ++ +++ +K+ + + I EGFD+ E EI Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGFDDINNFLQADEGVLFNLGVSYEKQEEIN 425 Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E + I + + ++ EEL E G+ E++ C Sbjct: 426 KILKEGMIIIANDNDESMEKVEEDEELL------------CPECGVVINENMTSCP 469 >gi|282898605|ref|ZP_06306593.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281196473|gb|EFA71382.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 428 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 137/419 (32%), Positives = 212/419 (50%), Gaps = 48/419 (11%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + + ++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKDLIEKISLERNLPRLAVQSSIREALLKGYERYRRAQNLERRQFDENYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P G V + P +FGR+A Sbjct: 69 GEGFRVLSTKTIVEEVTNGDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + + R K Y+ V + Q RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITE-------------------EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 DI + +E+S F + + + E + + E Sbjct: 369 DIKDQAKYDYGAEDAKFAAVRANYQEESNQLDNQFEVIEEEYEDDPDAGEDEFNSMEEE 427 >gi|257784634|ref|YP_003179851.1| NusA antitermination factor [Atopobium parvulum DSM 20469] gi|257473141|gb|ACV51260.1| NusA antitermination factor [Atopobium parvulum DSM 20469] Length = 413 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 198/359 (55%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK ID +L + S+ K+ + RV I+ TG + ++ E Sbjct: 4 EMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATGRVYVY---E 60 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V + E + + + + P D R+A Q AK I VR A R Sbjct: 61 LVPKGE-PDEE-----------TGEYTEFDEVDVTPPDTSRIAAQHAKAEIKTLVRNAAR 108 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 + Y EF+ +VG+II+GTV + I+ + + + RDE + E Sbjct: 109 AQIYDEFRGRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDQRRFPDERDERPAGERY 168 Query: 177 RPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R+K+ I DVR E++ P +++SRTHP + +LF +EVPE+Y+G+V + Sbjct: 169 LHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYDGVVSI 228 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 ++++R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V W D+A Sbjct: 229 RSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDAARC 288 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V +AL PA V++V++D G VIVP +QLSLAIG+ GQN RLA++LTG IDI E Sbjct: 289 VASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKNES 347 >gi|225551696|ref|ZP_03772640.1| transcription elongation protein NusA [Borrelia sp. SV1] gi|225371723|gb|EEH01149.1| transcription elongation protein NusA [Borrelia sp. SV1] Length = 482 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 135/464 (29%), Positives = 256/464 (55%), Gaps = 19/464 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 FLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIRELG 432 ++ E F ++ +++ +K+ + + I +E +I +A E L +K E+ Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISDLSKEGLDDINNFLQADEGLLFNLGVSYEKQEEIN 425 Query: 433 ----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++ SI ++ ++ E G+ E++ C Sbjct: 426 KILKEGMIIIANDNDESIEKVEEDEELLCPECGVVINENMTSCP 469 >gi|189501596|ref|YP_001957313.1| transcription termination factor NusA [Candidatus Amoebophilus asiaticus 5a2] gi|189497037|gb|ACE05584.1| transcription termination factor NusA [Candidatus Amoebophilus asiaticus 5a2] Length = 411 Score = 356 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 127/409 (31%), Positives = 230/409 (56%), Gaps = 15/409 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L++ A K++DR V+ ++ + + +GT + + IN + GD+ ++R Sbjct: 3 SKKLIETFAEFARSKNVDRPTVIRILEEVFKAMIHKKFGTDDNFDIIINLDQGDLQIWRF 62 Query: 66 LEVV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EVV E++ ++ ISL A+ + +IG VS+ + FGR A+ +A+Q +IQK Sbjct: 63 REVVDDNSEDIWDHDK-ISLSEAKKIEEDFNIGEEVSEEISVDSFGRRAITAARQTLIQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 V++ E+D YL++ +GE+I+ V ++ VI VD + + + E I ++ + G+ Sbjct: 122 VKDLEKDALYLKYTQLIGEMITVEVHQILPQEVILVDEERKELFLPKSEQIFKDIFKKGE 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ ++ + ++ P+V+LSRT P F+ +LF EVPEI++GI+ +K V R+PG RAK+A Sbjct: 182 YIRAVVHRIDLQKSTPKVILSRTSPIFLERLFESEVPEIFDGIITIKKVVREPGERAKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVG++GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + Sbjct: 242 VESLDDRIDPVGACVGIKGSRIHSIVRELQNENIDVINYTDNLELYISRALSPAKISSIQ 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + R+ V + +Q+SLAIG+ GQN++LAS+L ID+ E + E Sbjct: 302 M--KGDRVAVYLKPDQVSLAIGKGGQNIKLASRLVDREIDVYREVD-------SIGEDVN 352 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 A ++ I L G + + + ++ ++ET E+ Sbjct: 353 LEEFADEIEPWIIDELKKTGLDSAKSVLAIPKEDLERRTDLEKETIDEL 401 >gi|226320845|ref|ZP_03796397.1| transcription elongation protein NusA [Borrelia burgdorferi 29805] gi|226233711|gb|EEH32440.1| transcription elongation protein NusA [Borrelia burgdorferi 29805] gi|312149161|gb|ADQ29232.1| transcription elongation protein NusA [Borrelia burgdorferi N40] Length = 482 Score = 356 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 133/464 (28%), Positives = 256/464 (55%), Gaps = 19/464 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIRELG 432 ++ E F ++ +++ +K+ + + I +E +I +A E + +K E+ Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDINNFLQADEGVLFNLGVSYEKQEEIN 425 Query: 433 ----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++ S+ ++ ++ E G+ E++ C Sbjct: 426 KILKEGMIIIANDNDESMEKVEEDEELLCPECGVVINENMTSCP 469 >gi|227495147|ref|ZP_03925463.1| transcription termination factor NusA [Actinomyces coleocanis DSM 15436] gi|226831599|gb|EEH63982.1| transcription termination factor NusA [Actinomyces coleocanis DSM 15436] Length = 343 Score = 356 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 198/360 (55%), Gaps = 24/360 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + V ID ++ + D++ K + G++ + R+EI+ +TG +++ Sbjct: 1 MSALREVESTLEIDGITLVKAIEDALLKVYHKMPGSIKEARIEIDRKTGKVAVM------ 54 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + G D P +FGR+A +A+ +I Q++REA+ + Sbjct: 55 --------------ATEFDDDDNPIGEFDD--TPKEFGRIATATARSIITQRIREADDSK 98 Query: 130 QYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF++K G ++ GTV+ ++ +G + ++ E + E G +++Y+ + Sbjct: 99 VLGEFRNKTGTVVVGTVEAHTNPHFTLLRVGEFEAILPESEKVPGETYEHGKVIRAYVLE 158 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +RG ++ +SR+HP F+ LF EVPEI G+V++K+V+R+ G R+K+AV +++ I Sbjct: 159 VTRGERGARITVSRSHPNFVEALFAREVPEIAQGLVEIKSVAREAGHRSKIAVAATEEGI 218 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGR 307 + GAC+G G RV+AV+TEL+ EKIDIV +S D A F+ N+L PA V+ V +D + Sbjct: 219 NAKGACIGPMGRRVRAVMTELQGEKIDIVDYSTDPARFIANSLSPARVSTVTIDSLPEKK 278 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP Q SLAIGR GQN RLA++L G+ IDI ++ E R ++N Sbjct: 279 ATVIVPDFQFSLAIGREGQNARLAARLCGFHIDIHSDTESGYGVMASDVSRPDVSNASLN 338 >gi|224533442|ref|ZP_03674035.1| transcription elongation protein NusA [Borrelia burgdorferi CA-11.2a] gi|225549360|ref|ZP_03770332.1| transcription elongation protein NusA [Borrelia burgdorferi 94a] gi|224513404|gb|EEF83762.1| transcription elongation protein NusA [Borrelia burgdorferi CA-11.2a] gi|225369988|gb|EEG99429.1| transcription elongation protein NusA [Borrelia burgdorferi 94a] gi|312148269|gb|ADQ30928.1| transcription elongation protein NusA [Borrelia burgdorferi JD1] Length = 482 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 254/476 (53%), Gaps = 43/476 (9%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASI-----EGFDE-------------------ETAVEIQ 410 ++ E F ++ +++ +K+ + + I EG D+ E EI Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDINNFLQADEGALFNLGVSYEKQEEIN 425 Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E + I + + ++ EEL E G+ E++ C Sbjct: 426 KILKEGMIIIANDNDESMEKVEEDEELL------------CPECGVVINENMTSCP 469 >gi|86605175|ref|YP_473938.1| transcription elongation factor NusA [Synechococcus sp. JA-3-3Ab] gi|86553717|gb|ABC98675.1| transcription termination factor NusA [Synechococcus sp. JA-3-3Ab] Length = 455 Score = 355 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 206/373 (55%), Gaps = 28/373 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPET 57 L ++ + ++ E+++ R V + + +++ K + VE++ E Sbjct: 9 LAEMVEMISRERNLPRHAVTNALREALLKGYERYRKTIQRDVVFEEDHFRNFDVELDVEA 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 G + +VEEV + +ISL + P ++G V++ + P +FGR+A K Sbjct: 69 GGFRILATKTIVEEVRDPDHEISLYDVQQDYPEAEVGWEVTNDVTPQQAEFGRMAAIQTK 128 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRDE 169 QV+ QK+R+ +R EF+D ++ V R E VI+ + + + + + E Sbjct: 129 QVLAQKLRDQQRRLIQEEFRDLENTVLQARVLRTERQTVIMAVSSGFGQPEVEAELPKKE 188 Query: 170 TISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 ++ + P +K Y+ V R GPQ+L+SR +V LF EVPEI IV++ A Sbjct: 189 QLASDRYTPNAVMKVYLKKVYEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVA 248 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSP Sbjct: 249 VAREANPPSRNVGPRTKIAVDTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSP 308 Query: 282 DSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D AT++ NAL PA V +V ++D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 309 DPATYIANALSPAKVVEVRLVDPEIQQAHVLVTSDQLSLAIGKEGQNVRLAARLTGWKID 368 Query: 341 IITEEEDSINRQK 353 I E ++ Sbjct: 369 IKEVESYRAALEE 381 >gi|283769341|ref|ZP_06342240.1| transcription termination factor NusA [Bulleidia extructa W1219] gi|283103998|gb|EFC05382.1| transcription termination factor NusA [Bulleidia extructa W1219] Length = 569 Score = 355 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 136/341 (39%), Positives = 204/341 (59%), Gaps = 2/341 (0%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLEV 68 L V E+SI + V+L + +++ KA + D+ EIN + I LF+ V Sbjct: 9 LAALTDVEEERSIPQSVILEALKEAMAKAYKKNEELPDIDVVAEINEKKKSIDLFQNYVV 68 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V EVE+ ++SL+ AR D + +G V P+ R A AK V+ QK+REAE++ Sbjct: 69 VTEVEDDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREAEKE 128 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y E+ ++ E++ GT++ ++ +V+LG + ++ E I E LR R+K I + Sbjct: 129 AVYNEYIGQLNEMVFGTIESIKDKFTLVNLGKTTALMLSGEQIPNERLRENQRIKVVITE 188 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +E +G QVL+SR + +LF EVPEI+ G+V++KA++R+ G R K+AV S + Sbjct: 189 VNKEGKGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSHHPEV 248 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DP+GAC+G RGSRVQ ++ EL+ EK+DI WS D + V NAL PA + V+ +ED G + Sbjct: 249 DPIGACIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED-GSL 307 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIV ++QLSLAIG+RG+N RLA +LT IDI T E Sbjct: 308 MVIVAEDQLSLAIGKRGKNARLAVKLTNRKIDIKTRAELEE 348 >gi|219684959|ref|ZP_03539900.1| transcription elongation protein NusA [Borrelia garinii PBr] gi|219671697|gb|EED28753.1| transcription elongation protein NusA [Borrelia garinii PBr] Length = 482 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 135/465 (29%), Positives = 256/465 (55%), Gaps = 19/465 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKIFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP+G C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPIGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M ++++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FNKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIREL 431 ++ E F D+ +++ +K+ + + I +E +I +A E + +K E+ Sbjct: 365 DVVEEEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEI 424 Query: 432 G----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 +E S+ ++ ++ E G+ E++ C Sbjct: 425 NKILKEGMIIIANENDESMEKVEEDEELLCPECGVVINENMTSCP 469 >gi|254412331|ref|ZP_05026105.1| transcription termination factor NusA [Microcoleus chthonoplastes PCC 7420] gi|196180641|gb|EDX75631.1| transcription termination factor NusA [Microcoleus chthonoplastes PCC 7420] Length = 459 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 125/389 (32%), Positives = 205/389 (52%), Gaps = 29/389 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SD 48 M N L ++ + ++ ++ + V + +++ K + ++ Sbjct: 1 MSIVNLPGLKKMIEEISQSHNLPKSAVQQALREALIKGYERYRRAQRMERPHFDDEYFNN 60 Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DF 106 V+++ E + +VEEV N ISLK ++ +G V + P DF Sbjct: 61 FEVDLDIEEEGFRILCTKTIVEEVGNTDHHISLKEVQEVASEAQLGDSVVLDVTPDQRDF 120 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------ 160 GR+A KQV+ QK+R+ +R EF++ G ++ V R E +VI+ + + Sbjct: 121 GRMAAIQTKQVLSQKLRDQQRKLIQEEFEELEGTVLQARVLRFERQSVIMAISSGFGQPE 180 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEI 219 + + + E + + R G K ++ VR RGPQ+++SR +V LF EVPEI Sbjct: 181 VEAELPKREQLPNDTYRIGSTFKVFLKKVREGPHRGPQLVVSRASAGLVVYLFANEVPEI 240 Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 + +V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR E Sbjct: 241 EDEVVRIVAVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGE 300 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 KID++ WSPD AT++ NAL PA V +V +++ + + ++V ++QLSLAIG+ GQNVRLA Sbjct: 301 KIDVIRWSPDPATYIANALSPARVEEVLLVNPEGRQAHILVAEDQLSLAIGKEGQNVRLA 360 Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++LTGW IDI + + + Q Sbjct: 361 ARLTGWKIDIKDIAKYDYEAEHQKMQELQ 389 >gi|111115635|ref|YP_710253.1| transcription elongation factor NusA [Borrelia afzelii PKo] gi|216263366|ref|ZP_03435361.1| transcription elongation protein NusA [Borrelia afzelii ACA-1] gi|110890909|gb|ABH02077.1| N-utilization substance protein A [Borrelia afzelii PKo] gi|215980210|gb|EEC21031.1| transcription elongation protein NusA [Borrelia afzelii ACA-1] Length = 482 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 134/465 (28%), Positives = 257/465 (55%), Gaps = 19/465 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLIVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISREN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGIDITLQKKIREL 431 ++ E F ++ +++ +K+ + + I +E +I +A E L +K E+ Sbjct: 365 DVVEEEQFEEISKISDLKLLDSSVISNLSKEGLNDINNFLQADEGLLFNLGVSYEKQEEI 424 Query: 432 G----------VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS 466 ++ S+ ++ ++ E G+ E++ C Sbjct: 425 NKILKEGMIIIANDNGESMEKVEEDEELLCPECGVVINENMTSCP 469 >gi|194476586|ref|YP_002048765.1| transcription elongation factor NusA [Paulinella chromatophora] gi|171191593|gb|ACB42555.1| transcription elongation factor NusA [Paulinella chromatophora] Length = 468 Score = 354 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 131/406 (32%), Positives = 203/406 (50%), Gaps = 32/406 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV S + +++ K + ++ V ++ Sbjct: 9 LSHLIEDISEEKKLPPQVVESALREALLKGYERYRRTRYLGLIANPFEQDYFNNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQ 112 E + +VEEVE+ QI+L R + G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEEVESEDHQIALSDVRQVTEDVHAGDTVVLDVTPAKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 KQV+ +K+RE +R EF D +++ V R E +VI+ + + + + Sbjct: 129 MTKQVLSRKLREQQRRMIQEEFADLEDPVLTARVIRFERQSVILAVSSGLSRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ ++ +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEISEVPRRGPQLFVSRVNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRTVSPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WSPD A ++ N++ PA V + ++D V+V +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSPDPAQYISNSISPARVHNIRLIDPAGHHAHVLVTPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 IDI +E DS + + + LVAE Sbjct: 369 KIDIKDSETYDSAYEDATISNLIFKRDKEGTIQSEFESRLVAEQIT 414 >gi|282898464|ref|ZP_06306454.1| NusA antitermination factor [Raphidiopsis brookii D9] gi|281196630|gb|EFA71536.1| NusA antitermination factor [Raphidiopsis brookii D9] Length = 424 Score = 354 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 29/368 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + + ++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKDLIEKISLERNLPRLAVQSSIREALLKGYERYRRAQNLERRQFDENYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P G V + P +FGR+A Sbjct: 69 GEGFRVLSTKIIVEEVTNSDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + + R K Y+ V + Q RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEED 347 DI + + Sbjct: 369 DIKDQAKY 376 >gi|124002855|ref|ZP_01687707.1| transcription termination factor NusA [Microscilla marina ATCC 23134] gi|123992083|gb|EAY31470.1| transcription termination factor NusA [Microscilla marina ATCC 23134] Length = 423 Score = 354 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 128/417 (30%), Positives = 228/417 (54%), Gaps = 12/417 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 ++ E++ A K+ID+ ++ V+ + + R Y + + V +N E GD+ ++R Sbjct: 2 DKQEIISSFAEFARAKNIDKVLMEQVLEEVFRTMIRKKYTSDENFDVIVNIEDGDLEMYR 61 Query: 65 LLEVVEEVENYTCQ---ISLKVARDRDPSI---DIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +VE+ + ++L A+ DP I DIG + DFGR A+ +A+Q + Sbjct: 62 NRIIVEDDSPEAQELDKVTLSEAKKIDPEIAEEDIGDEFPQTVYLSDFGRRAILTARQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLR 177 IQK+++ E++ YL++KD EI+ V ++ +++D ++ + ++E I ++ R Sbjct: 122 IQKIKDVEKENLYLKYKDMTDEIVVTEVHQILSRELLLLDSEGNELSLPKNELIPKDRYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ K+ ++ V P+++LSRT P F+ +LF E+PE+Y+G++ +K V R PG RA Sbjct: 182 KGEMSKAVVHRVDMINGNPKIILSRTSPIFLERLFESEIPEVYDGLITIKKVVRQPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + ++ AL PA +T Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHSIVRELNNENIDVINYTDNLDLYITRALSPAKIT 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + + ED GR+ V + +Q+SLAIG+ G N++LAS+L G ID+ D + + + Sbjct: 302 SIKM-EDDGRVSVFLKPDQVSLAIGKGGHNIKLASKLVGMEIDVYR---DMDEYEIEEDI 357 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 F ++ I L G + + V + + +EET + + Sbjct: 358 ELSEF-DDEEIEPWIRDELRRLGMETAKSVLNVGRELLINRSELEEETVDYLLALLK 413 >gi|149197530|ref|ZP_01874581.1| transcription elongation factor NusA [Lentisphaera araneosa HTCC2155] gi|149139548|gb|EDM27950.1| transcription elongation factor NusA [Lentisphaera araneosa HTCC2155] Length = 413 Score = 353 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 137/415 (33%), Positives = 235/415 (56%), Gaps = 5/415 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ + + + EK+ID+ ++ ++ D++ G S+I+VEIN TGD+++ Sbjct: 2 NSELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIAD 61 Query: 66 LEVVEEVENYTCQISLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + + EEV + +I L A+ + + IG V L R+A Q+ +Q I+Q++R Sbjct: 62 VVIAEEVFDKRHEIDLASAQKEYGDEVAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRLRT 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++R E+ D VGE+ISGTV+ E +IVD G + G + + + + RE GD + + Sbjct: 122 FEKERVVEEYSDMVGELISGTVRHFEKNELIVDFGRAQGGLGKMDRVPRERFDNGDHITA 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ + GP ++LSRT + + KLF EV EI NG+V++KAV+R G R K+AV S Sbjct: 182 LLKEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAVAS- 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S+DPVGAC+G+RGSRV+ + EL +EK+DI+ +S D +V A +P + +V +D+D Sbjct: 241 -DSLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEIDQD 299 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD-FNERTQFFM 363 I+++V +E +GR G+N+RL +L W I++ D+ + E Q M Sbjct: 300 GRLIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQTMM 359 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + N+DE A +++ G+ +E ++ ++ G + + A EI A+ L+ Sbjct: 360 KLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVEA-GIEADHATEIIEYAKSRLQ 413 Score = 37.7 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 10/153 (6%) Query: 321 IGRRGQNVRLASQ-LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 IG RG V+ Q L +DII ED ++ + I+ D + LLV+E Sbjct: 250 IGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEIDQDGRLIKLLVSE 309 Query: 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439 + + I E + +Y+ +IT + I+E + + Sbjct: 310 --ESYKSIVGRDGENIRLTEELMDWDIE-----VEKYVYDTEITFDEHIQEAY--QTMMK 360 Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 +P +D + + G ++E ++ S DDL+ Sbjct: 361 LPNMDEGKARMMIDGGYLSLEGVSEASTDDLVE 393 >gi|88802100|ref|ZP_01117628.1| transcription elongation factor NusA [Polaribacter irgensii 23-P] gi|88782758|gb|EAR13935.1| transcription elongation factor NusA [Polaribacter irgensii 23-P] Length = 418 Score = 353 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 131/411 (31%), Positives = 223/411 (54%), Gaps = 20/411 (4%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYTC 77 KSIDR ++S++ + + + +G+ + + INP+ GD+ ++R VV + E+ Sbjct: 17 KSIDRVTLMSILEEVFRATLKRKFGSDDNFDIIINPDKGDLEIWRNRVVVADGFSEDDNE 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L AR +P +IG VS+ + +D GR A+ + +Q +I K+ E + + FK+ Sbjct: 77 EIELAEARLIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISKIYEHDSTNIFKHFKEL 136 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 GE+ S V + + +I+ D ++ V+ + E I + R GD V+ I V P Sbjct: 137 EGELYSAEVHHIRHNAIILLDDDGNEIVLPKSEQIRSDFFRKGDSVRGVIKTVELRGNKP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+AV S D IDPVGACVG Sbjct: 197 AIILSRTAPAFLNKLFEQEIPEVFDGLITVERVARIPGEKAKVAVDSYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-------DEDVGRIE 309 ++GSR+ +V EL +E ID++ ++ + F+ AL PA VT + + + GR+ Sbjct: 257 VKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSMEIEMYEEERNGKKGRVS 316 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE-EDSINRQKDFNERTQFFMQAINV 368 V++ E++S AIGR G N+RLAS+LTG+ ID+ E E+ +F + + Sbjct: 317 VLLRPEEVSKAIGRGGVNIRLASELTGYEIDVKREGLEEEDVELTEFGD---------EI 367 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + + G + + E+ +EET +++Q +E E Sbjct: 368 EAWVIKEFKNIGLDTARSVLEASVEELVKRTDLEEETILDVQRILKEEFEQ 418 >gi|325294242|ref|YP_004280756.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064690|gb|ADY72697.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 374 Score = 353 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 149/358 (41%), Positives = 222/358 (62%), Gaps = 22/358 (6%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 + + EK I ++ V+ + I AAR G + V+I+ + D +F+ VVE+V Sbjct: 8 VELLCREKGISKEDVVKAVKVGIINAARKA-GYKGHLVVKIDEDGKDFGIFQEKTVVEDV 66 Query: 73 ENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 ++ +ISL+ A++ S+ +G V + + GR+A ++A QVI +K+ EAER Y Sbjct: 67 KDIDYEISLEEAKELFGDSVKLGDKVLVEIKTEELGRIAAKAAAQVIHEKISEAERKALY 126 Query: 132 LEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 FK+KVG+IISGTVK ++ G+VI+DLG G++ ++E IS+E R GDRV++YIYDV Sbjct: 127 DYFKEKVGDIISGTVKEIKRNGDVILDLGRIVGILPKEEQISKEKYRIGDRVRAYIYDVV 186 Query: 191 REQRG--------------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + + P V+LSRTHP+F+ +L +E+PE+ +G+V++KAV+R+PG R Sbjct: 187 FDYKRYNRRKPSKIDDYPPPYVILSRTHPKFLKRLMEIEIPEVADGLVEIKAVAREPGIR 246 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S + IDPVGAC+G++GSR+ + EL EKI+I+ W+ D A V L PA V Sbjct: 247 AKVAVDSKEEYIDPVGACIGVKGSRILPISRELSGEKIEIIRWTDDVAELVARVLSPAKV 306 Query: 297 TKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGW--TIDIITEEEDSI 349 + ED R+EV+VP +QLSLAIG+ G N RLAS+L G IDII E + Sbjct: 307 LQSESYEDENGELRVEVVVPDDQLSLAIGKHGVNARLASKLVGQIVGIDIIKESDFRK 364 >gi|209527729|ref|ZP_03276225.1| NusA antitermination factor [Arthrospira maxima CS-328] gi|209491850|gb|EDZ92209.1| NusA antitermination factor [Arthrospira maxima CS-328] Length = 415 Score = 353 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 207/380 (54%), Gaps = 29/380 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPET 57 L + ++++ E+++ + V + +++ K + VE++ E Sbjct: 9 LKDMIESISTERNLPKQAVEEALREALLKGYERYRRTVQIDTQFSEDYFDNFDVELDVEE 68 Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + L +VE+ N QISLK ++ P +G V+ + P +FGR+A Sbjct: 69 EGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAQLGDTVTLDVTPEQNEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++ Sbjct: 189 EQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSNHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD + ++ NAL PA V +V +++ + R V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERT 359 DI + + + R Sbjct: 369 DIKDAAKYDAAAEDEMEARR 388 >gi|187918654|ref|YP_001884220.1| transcription elongation factor NusA [Borrelia hermsii DAH] gi|119861502|gb|AAX17297.1| N utilization substance protein A [Borrelia hermsii DAH] Length = 496 Score = 353 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 138/427 (32%), Positives = 244/427 (57%), Gaps = 15/427 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + +TGD+ ++ ++VE Sbjct: 21 QMISNIASERGMSIDAIRKTVRESVMIAYKKYFGTSENALIKFDEDTGDLVVYSKKKIVE 80 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I ++ + G + P F R+++Q AKQ ++ E + Sbjct: 81 EVQNDILEILQDDIQEF--EVVEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDNEL 138 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + SRE D+V+ +Y V+ Sbjct: 139 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSSREVYGLNDKVRVLVYSVK 198 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP Sbjct: 199 KGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEIDP 258 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + V ++DED+ + Sbjct: 259 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSRDIKEFIRDALTPAKIDNVYIVDEDLHKAL 318 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V EQLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F Sbjct: 319 VVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQETF-------- 370 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 E+ +L +V+E +I+ I+ ++ D + ++ + ++ ++ + Sbjct: 371 EMFDKILQD----NVQEDEFEEINRISELKILDSDIVDKLIEAGLDDIDNFLDASEENLF 426 Query: 430 ELGVSEE 436 ELG+S E Sbjct: 427 ELGISYE 433 >gi|113477415|ref|YP_723476.1| transcription elongation factor NusA [Trichodesmium erythraeum IMS101] gi|110168463|gb|ABG53003.1| NusA antitermination factor [Trichodesmium erythraeum IMS101] Length = 426 Score = 352 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 208/408 (50%), Gaps = 34/408 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM------------SDIRVEINPE 56 L ++ ++ E+++ + V + + +++ K T + +E++ E Sbjct: 9 LKELIGNISKERNLPKQAVQTALREALLKGYERYRRTQRVDGVNFTDDYFENFEIELDIE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N I+L+ + + V + P +FGR+A Sbjct: 69 EEGYRVLATKTIVEEVTNPDHHIALQEVLEVASEAQLNDTVFLDVTPEKNEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EF+D GE++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDQQRKMIQEEFQDLEGEVLQARVLRFEKQSVILAVSSGFGRLEVEAELPKK 188 Query: 169 ETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKRVCEGSTRGPQLLVSRADAGLVVYLFENEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD + ++ N+L PA V +V ++D + R ++V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSIYIANSLSPARVDEVRLIDPEERRSHILVSEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITE-----EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 DI E+ + + R Q N E ++ F Sbjct: 369 DIKDTNRYDHAEEDSKVAAEVSHRQALAEQEENKIEESELEVIENTFD 416 >gi|317057642|ref|YP_004106109.1| NusA antitermination factor [Ruminococcus albus 7] gi|315449911|gb|ADU23475.1| NusA antitermination factor [Ruminococcus albus 7] Length = 372 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 206/367 (56%), Gaps = 21/367 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + E ID+DV++ + + I KA + IRV+I P TG + + L EV Sbjct: 5 FFNALADLVSENEIDKDVLIEKIREGIIKAIKKENPESEHIRVDIEPATGKLEMCILKEV 64 Query: 69 --VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V V++ +I + A+ DP I +G V P+ P GRVA Q AKQ I +++ E Sbjct: 65 MKVMFVDDPANEIYIGEAQTYDPDIKVGDWVEIPVNPAKIGRVAAQFAKQSIKHDIKDFE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 R++ ++KDK EI++ TV++VE GN ++ + ++ R E I E L+ GD++K Sbjct: 125 RNKLIEQYKDKEHEIVTATVQKVEPATGNAVITIDKNEHYFYRSEQIPGEVLKEGDKIKV 184 Query: 185 YIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI + E+R P V LSRTH + +LF +EVPEI +G V++K++SR G R+K+AV+S Sbjct: 185 YIVSLGGGEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEIKSISRTEGVRSKIAVWS 244 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D ++D VGAC+G + SR+ AVV EL+ EKID++ W D A F+ AL PA V V L E Sbjct: 245 KDKNVDAVGACIGPKKSRISAVVQELKGEKIDVINWVEDEAEFIAKALAPAEVLSVELLE 304 Query: 304 DV----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + VIVP Q SLAIG +GQN +LA+ LTG+ IDI+ E Sbjct: 305 PEVRIEHKGEEKEFERVIKKCRVIVPNSQFSLAIGNKGQNAKLAAGLTGYKIDIVPENAP 364 Query: 348 SINRQKD 354 ++ Sbjct: 365 ESAETEE 371 >gi|254431817|ref|ZP_05045520.1| transcription termination factor NusA [Cyanobium sp. PCC 7001] gi|197626270|gb|EDY38829.1| transcription termination factor NusA [Cyanobium sp. PCC 7001] Length = 476 Score = 351 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 198/372 (53%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V+++ Sbjct: 9 LNNLIEDISEEKKLPPAVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVQLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QI+L + IG V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVQQVADDAQIGDTVVLDVTPEKDDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D ++S V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLSARVVRFERQSVIMAVSSGPGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R +K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANTTLKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WSPD ++ N+L PA V V ++D D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSPDPGQYIANSLSPARVEAVRLVDPDGHHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 IDI E Sbjct: 369 KIDIKNAVEYDQ 380 >gi|284052678|ref|ZP_06382888.1| transcription elongation factor NusA [Arthrospira platensis str. Paraca] gi|291568133|dbj|BAI90405.1| transcription termination factor NusA [Arthrospira platensis NIES-39] Length = 415 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 129/394 (32%), Positives = 212/394 (53%), Gaps = 33/394 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTMSDIRVEINPET 57 L + ++++ E+++ + V + +++ K + VE++ E Sbjct: 9 LKDMIESISTERNLPKQAVEEALREALLKGYERYRRTVQIDTQFTEDYFDNFDVELDVEE 68 Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + L +VE+ N QISLK ++ P ++G V+ + P +FGR+A Sbjct: 69 EGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAELGDTVTLDVTPEQNEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++ Sbjct: 189 EQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSNYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD + ++ NAL PA V +V +++ + R V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAI--NVDEI 371 DI + + + Q F + V E Sbjct: 369 DIKDVAKYDAA--AEDEKVAQEFQGQLTGEVSEE 400 >gi|300866111|ref|ZP_07110839.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506] gi|300335907|emb|CBN55997.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506] Length = 427 Score = 350 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 133/399 (33%), Positives = 202/399 (50%), Gaps = 33/399 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--------LYGTM--SDIRVEINPETG 58 L + D ++ E+++ + V + + +++ K + + VE++ E Sbjct: 9 LKDMVDVISKERNLPKHAVQAALREALVKGYERYRRTQRLDHFSEEYFDNFEVELDIEEE 68 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQ 116 + +VEEV N QI+L ++ +G V + P DFGR+A KQ Sbjct: 69 GFRVLATKSIVEEVSNPDHQIALLEVQEVATEAQLGDTVILDVTPDQNDFGRMAAIQTKQ 128 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRDET 170 V+ QK+R+ +R EFKD ++ V R E + I+ + + + + + E Sbjct: 129 VLAQKLRDQQRKMIQEEFKDLEETVLQARVLRFERQSAILAVSSGFGQPEVEAELPKREQ 188 Query: 171 ISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + +N R K Y+ V RGPQ+++SR +V LF EVPEI +G+V++ AV Sbjct: 189 LPNDNYRANATFKVYLKKVGEGATRGPQLVVSRADAGLVVYLFANEVPEIEDGVVRIVAV 248 Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 249 AREANPPSRHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 308 Query: 283 SATFVINALRPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V L R ++V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 309 PATYIANALSPARVDEVRLVAPEGRRAHILVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 368 Query: 342 I------TEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 EDS + + DE Sbjct: 369 KDIAKYDRAAEDSKLAAEASRLALAAEEYESDFDEDSEE 407 >gi|158334115|ref|YP_001515287.1| transcription elongation factor NusA [Acaryochloris marina MBIC11017] gi|158304356|gb|ABW25973.1| transcription termination factor NusA [Acaryochloris marina MBIC11017] Length = 452 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 132/393 (33%), Positives = 213/393 (54%), Gaps = 34/393 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMS--DIRVEINP 55 L ++ + ++ E+++ + V + + +++ K + + VE++ Sbjct: 9 LAEMINVISRERNLPKPAVQAALQEALLKGYERYRRTLLLDSGAQFDEEYFYNFDVELDV 68 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113 E + +V+EVE+ QI+L R+ P +G V + P +FGR+A Sbjct: 69 EEEGFLVLATKMIVDEVESTDHQIALTEVREVAPEAQLGDTVVLDVTPEQNEFGRMAAIQ 128 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRR 167 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + ++ + + + Sbjct: 129 TKQVLSQKLRDQQRKLIQEEFQDLEKTVLQARVLRFERRSVIMAVTSAFGQPEVEAELPK 188 Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + +N R K ++ V RGPQ+++SR +V LF EVPEI + +V++ Sbjct: 189 REQLPNDNYRANATFKVFLKRVADGPHRGPQLVVSRADAGLVVYLFANEVPEIEDEVVRI 248 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ W Sbjct: 249 VAVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRW 308 Query: 280 SPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 SPD AT++ NAL PA V V ++D + + V+V ++QLSLAIG+ GQNVRLA++LTGW Sbjct: 309 SPDPATYIANALSPARVDAVRLIDTEERQAHVLVAEDQLSLAIGKEGQNVRLAARLTGWK 368 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 IDI D N ++ + +QA VDE Sbjct: 369 IDIK----DIANYDQEAEDLQLSELQAQKVDED 397 >gi|172036756|ref|YP_001803257.1| transcription elongation factor NusA [Cyanothece sp. ATCC 51142] gi|171698210|gb|ACB51191.1| transcription termination factor, N utilization substance protein [Cyanothece sp. ATCC 51142] Length = 428 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 29/363 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56 L Q+ + ++ ++ + V + +++ K Y + VE++ E Sbjct: 9 LTQMIEEISQRHNLPKTAVQEALREALLKGYERFRRSQNLDRQQFYDEYFDNFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEVEN ISL+ ++ +G V + P DFGR+A Sbjct: 69 EEGFRILSTKRIVEEVENSDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ + ++ + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSAFGQPEVEAILPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DII 342 DI Sbjct: 369 DIK 371 >gi|318042328|ref|ZP_07974284.1| transcription elongation factor NusA [Synechococcus sp. CB0101] Length = 477 Score = 347 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 128/377 (33%), Positives = 195/377 (51%), Gaps = 31/377 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV S + +++ K + S+ V ++ Sbjct: 9 LSNLIEDISEEKKLPAQVVESALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QI+L IG V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V R GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEIPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEAVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKD 354 IDI E + + Sbjct: 369 KIDIKNSTEYDQAAEDE 385 >gi|126657165|ref|ZP_01728331.1| transcription elongation factor NusA [Cyanothece sp. CCY0110] gi|126621436|gb|EAZ92147.1| transcription elongation factor NusA [Cyanothece sp. CCY0110] Length = 432 Score = 347 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 29/363 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56 L Q+ + ++ ++ + V + +++ K Y + VE++ E Sbjct: 9 LTQMIEEISQRHNLPKTAVQEALREALLKGYERFRRSQNLDRQQFYDEYFDNFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEVEN ISL+ ++ +G V + P DFGR+A Sbjct: 69 EEGFRILSTKRIVEEVENTDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ + ++ R Sbjct: 129 KQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSTFGQPEVEAILPRR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DII 342 DI Sbjct: 369 DIK 371 >gi|67923759|ref|ZP_00517223.1| Transcription termination factor NusA [Crocosphaera watsonii WH 8501] gi|67854386|gb|EAM49681.1| Transcription termination factor NusA [Crocosphaera watsonii WH 8501] Length = 424 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 29/363 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56 L Q+ + ++ ++ + V + +++ K Y + VE++ + Sbjct: 9 LSQMIEEISQRHNLPKSSVQEALKEALIKGYERFRRSQSLDRQQFYDEYFDNFEVELDTD 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSA 114 + ++VEEVEN ISL+ ++ P ++G V + P DFGR+A Sbjct: 69 DEGFRILSTKKIVEEVENIDHHISLEEVQEVAPEAELGDEVVLDVTPNQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ D ++ + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFNELEGTVLNARVLRFERQDIIVAVQSAFGQPEVDAILPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +VV L+ + V+VP++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVPEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DII 342 DI Sbjct: 369 DIK 371 >gi|78779969|ref|YP_398081.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9312] gi|78713468|gb|ABB50645.1| NusA antitermination factor [Prochlorococcus marinus str. MIT 9312] Length = 468 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 205/390 (52%), Gaps = 33/390 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + ++V + +++ K + ++ V ++ Sbjct: 9 LNNLIEDISEEKKLPPNIVELALREALLKGYEKYRKTFYIGVVEDPFDEEYFNNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QISL + IG V + P DFGR+A Sbjct: 69 LDEEGYRVLSSKIIVEEVESEDHQISLAEVKQVAEDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRGVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D +++N+L PA V +V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ID+ E +++ + ++ +Q + Sbjct: 369 KIDVKNSHEY--DQKAEDAAVSELIIQRED 396 >gi|148243067|ref|YP_001228224.1| transcription elongation factor NusA [Synechococcus sp. RCC307] gi|147851377|emb|CAK28871.1| Transcription elongation factor NusA [Synechococcus sp. RCC307] Length = 471 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 31/377 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + +VV + + +++ K + S+ V ++ Sbjct: 9 LSALIEDISEEKKLPANVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QI L + +G V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIGLADVQQVTDDAQLGDTVVLDVTPEKDDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+RE +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLREHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEIARRGPQLFISRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WSPD ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSPDPGQYLANSLSPARVDMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKD 354 IDI EE + + Sbjct: 369 KIDIKNSEEYDQASEDE 385 >gi|87125354|ref|ZP_01081200.1| NusA antitermination factor [Synechococcus sp. RS9917] gi|86167123|gb|EAQ68384.1| NusA antitermination factor [Synechococcus sp. RS9917] Length = 463 Score = 345 bits (887), Expect = 9e-93, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISDDPFDEEYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +VEEVE+ QI+L +G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSADPGQYIANSLSPARVDVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSIN 350 IDI E Sbjct: 369 KIDIKNAAEYDQT 381 >gi|123969228|ref|YP_001010086.1| transcription elongation factor NusA [Prochlorococcus marinus str. AS9601] gi|123199338|gb|ABM70979.1| N utilization substance protein A [Prochlorococcus marinus str. AS9601] Length = 467 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 205/390 (52%), Gaps = 33/390 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + ++V + +++ K + S+ V ++ Sbjct: 9 LNNLIEDISEEKKLPPNIVELALREALLKGYEKYRKTFYIGVNQDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QISL + IG V + P DFGR+A Sbjct: 69 LDEEGYRILSSKIIVEEVESEDHQISLVEVKQVADDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRAVGPRTKVAVDSVEEEVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS + +++N+L PA V +V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSNPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ID+ E +++ + ++ +Q + Sbjct: 369 KIDVKNSHEY--DQEAEDAAVSELIIQRED 396 >gi|257126084|ref|YP_003164198.1| transcription elongation factor NusA [Leptotrichia buccalis C-1013-b] gi|257050023|gb|ACV39207.1| NusA antitermination factor [Leptotrichia buccalis C-1013-b] Length = 414 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 9/371 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+ +F + Sbjct: 9 FLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVFSQRLI 68 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++QKVRE E+ Sbjct: 69 VENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKR 128 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +FK+ I+S V++ E GN+ +D+ + ++ E +N +RVK Y+ Sbjct: 129 NIFNKFKEIENSIVSANVRKTDEKGNLYIDINGLEAIVPFKELSPTDNFVQNERVKIYVG 188 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V + + +SR + + L +EVPEI I+++K ++R+ GSRAK+AV+S D + Sbjct: 189 NVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKVAVYSEDEN 248 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL----DE 303 +D GAC+G G R+Q ++ ELR EKIDIV+W+ D FV NAL PA V V + +E Sbjct: 249 LDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLVEIVEGEEE 308 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDFNERT 359 + +V+V + QLSLAIG++GQN RLA++L G IDI TE E++ ++ Sbjct: 309 NTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEPFEIEQNDEYELEEETAFH 368 Query: 360 QFFMQAINVDE 370 + E Sbjct: 369 NSVESDLEESE 379 >gi|308233945|ref|ZP_07664682.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] gi|328943957|ref|ZP_08241422.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] gi|327491926|gb|EGF23700.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] Length = 414 Score = 344 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 118/359 (32%), Positives = 197/359 (54%), Gaps = 38/359 (10%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ + + +D ++ + ++ K + RV I+ TG + ++ L+ Sbjct: 5 MVEALIDICQKTHLDELYIVDRLEQTLAKNYADILHLEHGARVTIDRVTGKVYVYELI-- 62 Query: 69 VEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 + DP + + P + R+ VQ KQ + + +R A R Sbjct: 63 ------PKGE--------PDPETGEYQDFDERDVTPKEASRLVVQHTKQELAEIIRSAGR 108 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 + + EF +VG++I+GTV + I+ + + + R+E + E+ Sbjct: 109 QQIFEEFSKRVGDLITGTVLQTTSDFAIIKIRDGVEAELPYFDPHRYPDERNERPANEHY 168 Query: 177 RPGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R+++ I +VR E++ P +++SRTHP + +LF +EVPEI++G+V + Sbjct: 169 AHNQRLRALIVEVRDPHANQQQIRGERQRPSIVVSRTHPDLISRLFELEVPEIFDGVVSI 228 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 +V+R+PG R+K+AV S+D +DPVGACVG +GSRV+ VV+ELR E++D+V+WS D A Sbjct: 229 ASVAREPGIRSKIAVSSTDPHLDPVGACVGPKGSRVRTVVSELRGERVDVVMWSDDPAIN 288 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA V++V++D++ VIVP +QLSLAIG+ GQN RLA++LTG IDI E Sbjct: 289 VANALSPAKVSRVLVDKENNYATVIVPDDQLSLAIGKEGQNARLAARLTGMHIDIKNET 347 >gi|22299480|ref|NP_682727.1| transcription elongation factor NusA [Thermosynechococcus elongatus BP-1] gi|22295663|dbj|BAC09489.1| transcription termination-antitermination factor [Thermosynechococcus elongatus BP-1] Length = 395 Score = 344 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 118/369 (31%), Positives = 198/369 (53%), Gaps = 29/369 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTMSDIRVEINPE 56 L + + ++ E+++ + V + +++ K ++ VE++ E Sbjct: 9 LRAMINEISQERNLPKHAVHQALKEALLKGYERYRRSLRSDHSHFEEDHFANFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + + E VEN +I+L + +G V + P +FGR+A Sbjct: 69 QEGFRILATKTIKETVENPDREIALADVIEVVQDARVGDTVLLDVTPDHQEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRD 168 KQV+ QK+R+ +R EFK+ G ++ G V R E +VI+ + + + + + Sbjct: 129 KQVLAQKLRDQQRRLIQEEFKELEGTVLLGRVLRFERQSVIMAVRSDASQPEVEAELPKW 188 Query: 169 ETISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V+ QRGPQ+ +SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANSTFKVYLKRVKEGPQRGPQLEVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 A++R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AIAREANPPNHKVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ N+L PA V +V +++ + V+V +++S AIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANSLSPAPVEEVRLINPEARIAHVLVAPDKVSQAIGKEGQNVRLATRLTGWKI 368 Query: 340 DIITEEEDS 348 ++ + + Sbjct: 369 EVRDSSQYN 377 >gi|126697021|ref|YP_001091907.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9301] gi|126544064|gb|ABO18306.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9301] Length = 467 Score = 344 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 125/390 (32%), Positives = 207/390 (53%), Gaps = 33/390 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + ++V + + +++ K + S+ V ++ Sbjct: 9 LNNLIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QISL + IG V + P DFGR+A Sbjct: 69 LDEEGYRILSSKIIVEEVESEDHQISLIEVKQVADDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S ++ +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRAVGPRTKVAVDSVENEVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D +++N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ID+ E +++ + ++ +Q + Sbjct: 369 KIDVKNSHEY--DQEAEDAAVSELIIQRED 396 >gi|110005298|emb|CAK99622.1| putative transcription termination factor protein [Spiroplasma citri] Length = 471 Score = 344 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 118/350 (33%), Positives = 208/350 (59%), Gaps = 1/350 (0%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + +LL + + EK I RD++L + + I+KA + + + V+I+ +TG I + + Sbjct: 3 DGTKLLTTINEIVSEKQISRDLILDSIKEGIKKAYEKHFDPEATVFVDIDQKTGQIKVEK 62 Query: 65 LLEVVEEVENYTCQISLKVARD-RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L VV++VE+ +I L A++ I I V +P+ +F R+A+ Q+I Q+++ Sbjct: 63 ELTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEPVNSEEFSRLAIFQVGQIIKQQIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAE+D + E+ + G +++G V E ++V++ + I R I ++ G + Sbjct: 123 EAEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSDHFEVGQPIT 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 DV + + Q+ SRT F+ +L E+PEI+ +++VKA++RDPG R+K+AV+S Sbjct: 183 FLAEDVIKSKNAGQITGSRTSNDFLYRLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + ++ Sbjct: 243 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + +VIVP EQLSLAIG+ G +L ++LT W ++I++ E + + Sbjct: 303 EGKEADVIVPDEQLSLAIGKGGSAAKLVAKLTKWKLNIMSYSEALTKQVE 352 >gi|76496362|gb|ABA43692.1| NusA [Spiroplasma kunkelii CR2-3x] Length = 483 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 136/447 (30%), Positives = 238/447 (53%), Gaps = 18/447 (4%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + +LL D + EK I RD++L + + I+KA + + I VEI+ +TG I + + Sbjct: 15 DGAKLLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEK 74 Query: 65 LLEVVEEVENYTCQISLKVARD-RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L VV++VE+ +I L A++ I I V + + +F R+A+ Q+I Q+++ Sbjct: 75 ELTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIK 134 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAE+D + E+ + G +++G V E ++V++ + I R I E+ G + Sbjct: 135 EAEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSEHFEVGQPIT 194 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 DV + + Q++ SRT F+ L E+PEI+ +++VKA++RDPG R+K+AV+S Sbjct: 195 FLAEDVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 254 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + ++ Sbjct: 255 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 314 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF--NERTQF 361 + +V+VP EQLSLAIG+ G + +L ++LT W ++I++ E + + T Sbjct: 315 EEKEADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 374 Query: 362 FMQAINV---DEIIAHLLVAEGFADVEELACVKISEIASIEG--------FDEE--TAVE 408 + A+ V D+I +V V+ A + + E IE DEE + Sbjct: 375 ELSALKVKLKDKIKPKAIVET--NTVDITAGLPVEEFEIIEEQMAEETMILDEENYHVDD 432 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSE 435 + + LE ++ + + Sbjct: 433 LTESTPKVLENEIQEIEDNLSYFESEQ 459 >gi|33241096|ref|NP_876038.1| transcription elongation factor NusA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238625|gb|AAQ00691.1| Transcription elongation factor NusA [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 472 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 194/372 (52%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ + ++ Sbjct: 9 LNNLIEDISEEKKLPAQVVETALREALLKGYERYRKTLYLGINENPFEEEYFSNFDIGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEV++ QI+L G V + P +FGR+A Sbjct: 69 LDQEGYRVLASKIIVEEVDSEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEEFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLSQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSTDPIQYICNSLSPARVENVRLVDPDGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 IDI +E Sbjct: 369 KIDIKNSQEYDQ 380 >gi|88807314|ref|ZP_01122826.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] gi|88788528|gb|EAR19683.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] Length = 470 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 135/459 (29%), Positives = 218/459 (47%), Gaps = 36/459 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIEDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGLGEDPFDEEYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +V+EVE+ QI+L G V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVDEVESEDHQIALAEVMQVADDAQAGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSADPGQYIANSLSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI E ++ + ++ Q E E A + + + + Sbjct: 369 KIDIKNASEY--DQASEDAVVSELISQREQ--EEALQREAEERIAAEQAARAEEDARLRE 424 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + E+ E A + +E + + S+E Sbjct: 425 LYPLPEDE-EEYGDEAVDDVEMPEGATDEASEPTPESDE 462 >gi|116071183|ref|ZP_01468452.1| transcription elongation factor NusA [Synechococcus sp. BL107] gi|116066588|gb|EAU72345.1| transcription elongation factor NusA [Synechococcus sp. BL107] Length = 492 Score = 343 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 137/432 (31%), Positives = 213/432 (49%), Gaps = 34/432 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LTNLIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +V+EVE+ QI+L G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E ++I+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 IDI + E D E + + + L E A EE ++ E+ Sbjct: 369 KIDIKNSTEYDQAAEDAVVAELISQREEEEALQQEAEERLAVEQAARAEE--DARLRELY 426 Query: 397 SIEGFDEETAVE 408 + DE+ E Sbjct: 427 PLPEDDEDYVDE 438 >gi|148240413|ref|YP_001225800.1| transcription elongation factor NusA [Synechococcus sp. WH 7803] gi|147848952|emb|CAK24503.1| Transcription elongation factor NusA [Synechococcus sp. WH 7803] Length = 469 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 192/372 (51%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIEDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGVGEDPFDEEYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +V+EVE+ QI+L G V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVDEVESEDHQIALAEVMQVADDAQSGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPGQYIANSLSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 IDI E Sbjct: 369 KIDIKNASEYDQ 380 >gi|227488651|ref|ZP_03918967.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091545|gb|EEI26857.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51867] Length = 326 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 126/347 (36%), Positives = 192/347 (55%), Gaps = 33/347 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR--SLYGTMSDIRVEINPETGDISLFRLLE 67 + + EK I + +L+ +A + A S RVEI+P++G +++F Sbjct: 1 MSALRVLEKEKGISVEDLLTTIAQGLHSAYLQAHHLEDESSARVEIDPDSGAVTVF---- 56 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 A +RD +I + P DFGR+ + + +++RE + Sbjct: 57 ----------------AIERDEDGEIISEQDE--TPEDFGRLGASVVRDAVYRRLREVKT 98 Query: 128 DRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLRPG 179 DR + E+ G+ +SG V+ E G +V LG DG++ E I ENL+ G Sbjct: 99 DRDFDEYAGLEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHG 158 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRVK YI V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+ Sbjct: 159 DRVKCYIVGVGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKI 218 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++ ++ GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V Sbjct: 219 AVHATTKGVNAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGV 278 Query: 300 -VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VLDE+ V VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 279 EVLDEENQIARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDE 325 >gi|260434603|ref|ZP_05788573.1| transcription termination factor NusA [Synechococcus sp. WH 8109] gi|260412477|gb|EEX05773.1| transcription termination factor NusA [Synechococcus sp. WH 8109] Length = 483 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +V+EVE+ QI++ +G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSIN 350 IDI E Sbjct: 369 KIDIKNSTEYDQE 381 >gi|218960602|ref|YP_001740377.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] gi|167729259|emb|CAO80170.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] Length = 411 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 120/417 (28%), Positives = 232/417 (55%), Gaps = 8/417 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN L+ L A+ K +++D + +++ +++ + + ++V I+ G + Sbjct: 1 MSANMLDALNKLAAI---KQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVK 57 Query: 62 LFRLLEVVEEVENYTCQISLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + + +V E E QISL AR D ++ +G + + +F V++ +++I Sbjct: 58 V-KFKSLVVEREEGLGQISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQD 116 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+R+ E ++ +F + I++G +K ++ YG I+D G+ D ++ DE I E R G Sbjct: 117 KIRQLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGHVDALLPVDEQIENEFYRVG 176 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D +K+Y+ ++R ++ G ++LSRT+P+F+ KLF E+P I++G ++++ + R+PG R K+ Sbjct: 177 DNIKAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKV 236 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 + + D +DP+ ACVG +G+R+ ++ EL E+IDIV+ S D + NAL + +V Sbjct: 237 ELEAEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALGVEGIKRV 296 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++ E VI+ + +AIG++G+NV+LA++L G IDI T E K+ + Sbjct: 297 II-ERNHSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEEKMAKERRTVS 355 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + V IA L G+ V+++ + E+ ++EG ++TA ++ A+ + Sbjct: 356 HI-TELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAKYF 411 >gi|159904155|ref|YP_001551499.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9211] gi|159889331|gb|ABX09545.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9211] Length = 471 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 31/378 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LNNLIDDISEEKKLPAQVVETALREALLKGYERYRRTLYLGINENPFEEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +V+EVE+ QI+L IG V + P +FGR+A Sbjct: 69 LDEEGYRVLASKIIVDEVESEDHQIALSEVMQVAEDAQIGDTVVLDVTPEKEEFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V R GPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPTRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSADPVQYISNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDF 355 IDI +E + Sbjct: 369 KIDIKNSQEYDQESEDSA 386 >gi|78213595|ref|YP_382374.1| transcription elongation factor NusA [Synechococcus sp. CC9605] gi|78198054|gb|ABB35819.1| NusA antitermination factor [Synechococcus sp. CC9605] Length = 481 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +V+EVE+ QI++ +G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSIN 350 IDI E Sbjct: 369 KIDIKNSTEYDQE 381 >gi|284929277|ref|YP_003421799.1| transcription termination factor NusA [cyanobacterium UCYN-A] gi|284809721|gb|ADB95418.1| transcription termination factor NusA [cyanobacterium UCYN-A] Length = 387 Score = 342 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 128/379 (33%), Positives = 203/379 (53%), Gaps = 30/379 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56 L + ++ ++ + V + +++ K Y + VE++ E Sbjct: 9 LTNMIGEISQRHNLPKPAVQEALREALLKGYERFRRSQNLDRQPFYDEYFDNFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +++E VEN ISL+ ++ +G V + P DFGR+A Sbjct: 69 EEGFRILSTKKIMENVENIDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF++ G +++ V R E ++IV + ++ + +I + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFQELEGTVLNARVLRFERQDIIVAVQSTFGQPEVEAIIPKQ 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ Sbjct: 189 EQLPNDNYRANSSFKILLKKVREGSHRGPQLLVSRAAAGLVVDMFSIEVPEIEEDIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA + +V+ + D ++V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARIDEVILISPDERHALILVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DII-TEEEDSINRQKDFNE 357 DI T + F + Sbjct: 369 DIKNTIAHREELENQQFED 387 >gi|124022125|ref|YP_001016432.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9303] gi|123962411|gb|ABM77167.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9303] Length = 484 Score = 342 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 138/414 (33%), Positives = 212/414 (51%), Gaps = 36/414 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----------------YGTMSDIRVE 52 L + + ++ EK + VV + + +++ K Y + D+ +E Sbjct: 9 LNNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEEYFSNFDVGLE 68 Query: 53 INPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVA 110 ++ E + +VEEVE+ QI+L+ IG V + P DFGR+A Sbjct: 69 LDDE--GYRVLASKIIVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMA 126 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGV 164 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + Sbjct: 127 AATTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAE 186 Query: 165 IRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G Sbjct: 187 LPRRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGS 246 Query: 224 VQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 V++ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID+ Sbjct: 247 VRIVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDV 306 Query: 277 VVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 + WSPD ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LT Sbjct: 307 IRWSPDPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLT 366 Query: 336 GWTIDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 GW IDI ++E D + E + + L AE EE A Sbjct: 367 GWKIDIKNSQEYDQASEDTTVAELISQREEEEALQRDAESRLAAEQATRAEEDA 420 >gi|297571193|ref|YP_003696967.1| transcription termination factor NusA [Arcanobacterium haemolyticum DSM 20595] gi|296931540|gb|ADH92348.1| transcription termination factor NusA [Arcanobacterium haemolyticum DSM 20595] Length = 325 Score = 342 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 124/343 (36%), Positives = 203/343 (59%), Gaps = 28/343 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + V E ID +V+L+ + +++ A + G + RVE+N TG ++++ Sbjct: 5 MNELRIVESELGIDLNVLLNAIEEALVHAYNRVPGAVRGARVELNRSTGKVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + ++ G D P DFGR+A +A+ +I Q++R+AE DR Sbjct: 59 --------------APEVDENNEVIGEFDD--TPNDFGRIATSTARSIIAQRLRDAETDR 102 Query: 130 QYLEFKDKVGEIISGTVKRV-----EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 F+ K G+++SG V+ E ++ ++LG + G++R DE ++ E+ + GD +++ Sbjct: 103 VLGSFQGKKGQLVSGVVEGTAGSNPESRDLFIELGENRGLLRSDEQVASEHFKRGDLLRA 162 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + D+ RG + LSR+HP F+ +LF EVPEI +G V++ A++R+ G R K+AV+S+ Sbjct: 163 LVLDISVGPRGASIRLSRSHPDFVRQLFETEVPEIADGPVEIVALAREAGHRTKVAVWSN 222 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDE 303 D ++ G+ +G G RV+AV EL EKID+V + D A F+ AL PA VT+V +L+ Sbjct: 223 DDAVAAKGSLIGHNGQRVRAVTAELNGEKIDVVDYDDDPAKFIAAALSPAKVTEVEILNR 282 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D+ + IVP +Q SLAIG+ QNVRLA++LTGW+IDI E + Sbjct: 283 DMRQARAIVPDDQASLAIGKEAQNVRLAAKLTGWSIDIRRESD 325 >gi|33865134|ref|NP_896693.1| transcription elongation factor NusA [Synechococcus sp. WH 8102] gi|33638818|emb|CAE07115.1| N utilization substance protein A [Synechococcus sp. WH 8102] Length = 475 Score = 342 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 127/372 (34%), Positives = 194/372 (52%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTMYLGISEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +VEEVE+ QI+L+ G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEEVESEDHQIALQEVMQVADDAQEGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 +DI E Sbjct: 369 KLDIKNSTEYDQ 380 >gi|123966905|ref|YP_001011986.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9515] gi|123201271|gb|ABM72879.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9515] Length = 467 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 196/373 (52%), Gaps = 31/373 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV S + +++ K + S+ V + Sbjct: 9 LNNLIEDISEEKKLPPHVVESALREALLKGYEKYRRTFYIGVKEDPFDEEYFSNFDVGFD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QISL + IG V + P DFGR+A Sbjct: 69 LDEEGYRILSSKIIVEEVESEDHQISLNEVKQVADDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D +++N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSADPIEYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSIN 350 ID+ E + Sbjct: 369 KIDVKNSHEYNQE 381 >gi|227543254|ref|ZP_03973303.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51866] gi|227181063|gb|EEI62035.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51866] Length = 326 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 126/347 (36%), Positives = 193/347 (55%), Gaps = 33/347 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR--SLYGTMSDIRVEINPETGDISLFRLLE 67 + + EK I + +L+ +A + +A S RVEI+P++G +++F Sbjct: 1 MSALRVLEKEKGISVEDLLTTIAQGLHRAYLQAHHLEDESSARVEIDPDSGAVTVF---- 56 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 A +RD +I + P DFGR+ + + +++RE + Sbjct: 57 ----------------AIERDEDGEIISEQDE--TPEDFGRLGASVVRDAVYRRLREVKT 98 Query: 128 DRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLRPG 179 DR + E+ G+ +SG V+ E G +V LG DG++ E I ENL+ G Sbjct: 99 DRDFDEYAGLEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHG 158 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRVK YI V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+ Sbjct: 159 DRVKCYIVGVGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKI 218 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++ ++ GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V Sbjct: 219 AVHATTKGVNAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGV 278 Query: 300 -VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VLDE+ V VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 279 EVLDEENQIARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDE 325 >gi|254422159|ref|ZP_05035877.1| transcription termination factor NusA [Synechococcus sp. PCC 7335] gi|196189648|gb|EDX84612.1| transcription termination factor NusA [Synechococcus sp. PCC 7335] Length = 517 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 201/362 (55%), Gaps = 28/362 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTM--SDIRVEINPET 57 L + D ++ E+++ + V + +++ K + + VE++ + Sbjct: 9 LQAMIDGISQERNLPKSAVEMALQEALLKGYERYRRTQRIDGQFDEEYFDNFYVELDTDD 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VE VEN QI L + P G V + P DFGR+A K Sbjct: 69 EGFRVLANKTIVEAVENSDHQIGLAEVQQVAPEALAGDTVVLDVTPEQNDFGRMAAIQTK 128 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF+D G I++ V R E +VI+ + +++ + + + Sbjct: 129 QVLAQKLRDQQRRLIQEEFQDLEGSILNARVLRFERQSVIMAVSSGIGQPDTEAELLKRD 188 Query: 170 TISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R + + V RGPQ+L+SR+ +V+LF EVPEI + IV++ A Sbjct: 189 QLPNDNYRANATFRVALKRVSEGSHRGPQLLVSRSDASLVVELFSNEVPEIEDEIVRIVA 248 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV +++S +DPVGAC+G RGSR+Q VV ELR EKID++ WSP Sbjct: 249 VAREANPPSRSVGPRTKIAVDTAESDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSP 308 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +T++ NAL PA V +V L + GR V+VP++QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 309 DPSTYISNALSPARVDEVRLMDSEGRQAHVLVPEDQLSLAIGKEGQNVRLAARLTGWKID 368 Query: 341 II 342 I Sbjct: 369 IK 370 >gi|254526931|ref|ZP_05138983.1| transcription termination factor NusA [Prochlorococcus marinus str. MIT 9202] gi|221538355|gb|EEE40808.1| transcription termination factor NusA [Prochlorococcus marinus str. MIT 9202] Length = 467 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 125/390 (32%), Positives = 206/390 (52%), Gaps = 33/390 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + ++V + + +++ K + S+ V ++ Sbjct: 9 LNNLIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QISL + IG V + P DFGR+A Sbjct: 69 LDEEGYRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDHQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D +++N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ID+ E +++ + ++ +Q + Sbjct: 369 KIDVKNSHEY--DQEAEDAAVSELIIQRED 396 >gi|254226551|ref|ZP_04920134.1| Transcription elongation factor [Vibrio cholerae V51] gi|125620955|gb|EAZ49306.1| Transcription elongation factor [Vibrio cholerae V51] Length = 271 Score = 340 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 115/288 (39%), Positives = 177/288 (61%), Gaps = 18/288 (6%) Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FV Sbjct: 1 AAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFV 60 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 INA+ PA V +++DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Sbjct: 61 INAMAPADVASIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADL 120 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 Q++ + FM+ +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A Sbjct: 121 QKKHQEESMASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAD 180 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 E++ RA+E L I + ++ L +E+L ++ G++ + L G+ T+EDLA V Sbjct: 181 ELRSRAKEALTTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGV 240 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 DDL G G + + +I+ AR + W ++ Sbjct: 241 DDLEGIE-----------------GLTEQRAGELIMAAR-NICWFGED 270 >gi|218247498|ref|YP_002372869.1| transcription elongation factor NusA [Cyanothece sp. PCC 8801] gi|257061166|ref|YP_003139054.1| transcription elongation factor NusA [Cyanothece sp. PCC 8802] gi|218167976|gb|ACK66713.1| NusA antitermination factor [Cyanothece sp. PCC 8801] gi|256591332|gb|ACV02219.1| NusA antitermination factor [Cyanothece sp. PCC 8802] Length = 412 Score = 340 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 131/393 (33%), Positives = 209/393 (53%), Gaps = 29/393 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + + ++ ++ + V + +++ K R + + VE++ E Sbjct: 9 LANMIEEISQLHNLPKSAVQEALREALLKGYERYRRSQNLERQAFHEDYFDNFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSA 114 + ++VE VEN ISL+ ++ +G V + P DFGR+A Sbjct: 69 EEGFRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEVVLDVTPNQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF + G +++ V R E + IV + ++ + V+ + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQPEVEAVLPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+++SR+ +V LF +EVPEI IV++ Sbjct: 189 EQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPEIEEEIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V V+ ++ D V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 DI ++ + + Q + + D + Sbjct: 369 DIKDTATYQAEVEQKKHAQNQTAIDPLEEDPNL 401 >gi|33863793|ref|NP_895353.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9313] gi|33635376|emb|CAE21701.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9313] Length = 482 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 137/412 (33%), Positives = 209/412 (50%), Gaps = 32/412 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V + Sbjct: 9 LNNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEEYFSNFDVGLE 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +VEEVE+ QI+L+ IG V + P DFGR+A Sbjct: 69 LEDEGYRVLASKIIVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WSPD ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSPDPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 IDI ++E D + E + + L AE EE A Sbjct: 369 KIDIKNSQEYDQASEDTTVAELISQREEEEALQRDAEARLAAEQATRAEEDA 420 >gi|87301303|ref|ZP_01084144.1| transcription elongation factor NusA [Synechococcus sp. WH 5701] gi|87284271|gb|EAQ76224.1| transcription elongation factor NusA [Synechococcus sp. WH 5701] Length = 492 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LQNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QI+L + +G V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVQQVAEDAQVGDTVVLDVTPEKDDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WSPD ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSPDPGQYLANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 IDI + Sbjct: 369 KIDIKNAADYDQ 380 >gi|260889854|ref|ZP_05901117.1| transcription termination factor NusA [Leptotrichia hofstadii F0254] gi|260860460|gb|EEX74960.1| transcription termination factor NusA [Leptotrichia hofstadii F0254] Length = 386 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 126/349 (36%), Positives = 205/349 (58%), Gaps = 5/349 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++ L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+ Sbjct: 2 MKGRDQKIFLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDV 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++Q Sbjct: 62 KVYSQRLIVENVENPEEEISLQDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ + +FK+ I+S V++ E GN+ VD+ + ++ E + R G Sbjct: 122 KVRECEKRNIFNKFKEIENSIVSANVRKTDEKGNLYVDINGLEAIVPAKELSPVDIFRQG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+K YI V + + +SR + + L +EVPEIY I++++ ++R+ GSR+K+ Sbjct: 182 DRIKIYIGAVEESTKFTKTFVSRKSEELLRGLLELEVPEIYEEIIEIRNIAREAGSRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+D ++D GAC+G G R+Q ++ EL EKIDIV+W+ D FV NAL PA V V Sbjct: 242 AVYSNDENLDVKGACIGRNGMRIQNIIDELCGEKIDIVLWNEDITEFVKNALNPAEVLSV 301 Query: 300 VL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + +E++ V+V + QLSLAIG++GQN RLA++L G IDI TE Sbjct: 302 EIIEEGEENMKVARVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTE 350 >gi|157414094|ref|YP_001484960.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9215] gi|157388669|gb|ABV51374.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9215] Length = 467 Score = 339 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 197/373 (52%), Gaps = 31/373 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + ++V + + +++ K + S+ V ++ Sbjct: 9 LNNLIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QISL + IG V + P DFGR+A Sbjct: 69 LDEEGYRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D +++N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSIN 350 ID+ E Sbjct: 369 KIDVKNSHEYDQE 381 >gi|78184171|ref|YP_376606.1| transcription elongation factor NusA [Synechococcus sp. CC9902] gi|78168465|gb|ABB25562.1| NusA antitermination factor [Synechococcus sp. CC9902] Length = 485 Score = 339 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 136/434 (31%), Positives = 214/434 (49%), Gaps = 38/434 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + D ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LTNLIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +V+EVE+ QI+L G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQSGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E ++I+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQ---AINVDEIIAHLLVAEGFADVEELACVKISE 394 IDI E ++ + + Q + + L E A EE ++ E Sbjct: 369 KIDIKNSTEY--DQPAEDAVVAELISQREEEEALQQEAEERLAVEQAARAEE--DARLRE 424 Query: 395 IASIEGFDEETAVE 408 + + DE+ E Sbjct: 425 LYPLPEDDEDYVEE 438 >gi|224532423|ref|ZP_03673051.1| transcription elongation protein NusA [Borrelia burgdorferi WI91-23] gi|224512646|gb|EEF83019.1| transcription elongation protein NusA [Borrelia burgdorferi WI91-23] Length = 336 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 115/327 (35%), Positives = 203/327 (62%), Gaps = 3/327 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V +LDED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++L W ID+ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDV 336 >gi|320528334|ref|ZP_08029496.1| transcription termination factor NusA [Solobacterium moorei F0204] gi|320131248|gb|EFW23816.1| transcription termination factor NusA [Solobacterium moorei F0204] Length = 581 Score = 338 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 134/361 (37%), Positives = 211/361 (58%), Gaps = 3/361 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 LL V +K++ ++VL + +++ KA + +++ EIN ++ I +++ Sbjct: 8 LLNAIRGVEDDKNVPENIVLEALTEAVAKAFKKDSELQDIEVKAEINKKSKTIDIYQYYN 67 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL+ A+ D + ++GG V + R A AK V QK+REAE+ Sbjct: 68 VVEEVEDDELEISLEDAKKLDSNAELGGQVREKKEITSMSRAAASLAKNVFRQKIREAEK 127 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D+ E++ GTV+ V+ ++ LG + ++ + I E L G ++ I Sbjct: 128 VAVYNEYIDQKDEMVIGTVESVKDKFTLISLGKTVALLSKSAEIPHEKLTEGQSIRVVIT 187 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++E +G QVL+SR + +LF EVPEIY G+V++K+++R+ G R K+AV S + Sbjct: 188 DVQKETKGSQVLVSRADATLVKRLFEKEVPEIYQGVVEIKSIAREAGERTKMAVLSHNPD 247 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+G+C+G RGSRVQ ++ EL EKIDI W+ D V NAL PA + V+ +D Sbjct: 248 VDPIGSCIGPRGSRVQKIIDELHGEKIDIFQWNDDITELVKNALAPAEIISVLPGQDDNS 307 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--EEEDSINRQKDFNERTQFFMQA 365 + VIV ++QLSLAIG+RG+N RLA +LTG IDI T E ED + + + Q Sbjct: 308 LLVIVSEDQLSLAIGKRGKNARLAVKLTGHKIDIKTRQELEDMGKDYDELLAQAEVMKQK 367 Query: 366 I 366 + Sbjct: 368 L 368 >gi|227549050|ref|ZP_03979099.1| transcription elongation factor NusA [Corynebacterium lipophiloflavum DSM 44291] gi|227078904|gb|EEI16867.1| transcription elongation factor NusA [Corynebacterium lipophiloflavum DSM 44291] Length = 341 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 126/348 (36%), Positives = 195/348 (56%), Gaps = 37/348 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-----DIRVEINPETGDISLFR 64 L A++ E ID D +L +A ++ R Y RVEI+ +TGD+S+ Sbjct: 5 LNALKAISTEHGIDVDDLLETIAGALLSVYR-DYREAPPAEGHRARVEIDADTGDVSVL- 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V EV++ +S P++F R+ + I ++VRE Sbjct: 63 ----VSEVDDDGAVVS-----------------EYDDTPVNFSRIGAPTVLDAIKKRVRE 101 Query: 125 AERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISRENL 176 AE R + E+ + G+++SG V+R G ++V+LG DG++ E I E L Sbjct: 102 AEAGRVFSEYSEFEGQVVSGVVQRDANAEARGLIVVELGTEADPQDGILLPAEQIPGEKL 161 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + GDR+K+++ V + +R QV LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R Sbjct: 162 KHGDRIKAFVVGVNKGERKVQVNLSRTHPELVRGLFALEVPEVADGTVEIVAIAREAGHR 221 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV + ++ GAC+G RG+RV ++ +L EKIDI+ +S D A +V N+L P+ V Sbjct: 222 SKVAVQAKVKGVNAKGACIGPRGARVTNIMQQLGGEKIDIIEYSADPAKYVGNSLAPSKV 281 Query: 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +V VLD + V VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 282 VRVEVLDLEGQAARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHS 329 >gi|33862048|ref|NP_893609.1| transcription elongation factor NusA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634266|emb|CAE19951.1| N utilization substance protein A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 467 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 195/378 (51%), Gaps = 31/378 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + +++ K + S+ V + Sbjct: 9 LNNLIEDISEEKKLPPHVVELALREALLKGYEKYRKTFYIGVKEDPFDEEYFSNFDVGFD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VE VE+ QISL+ + IG V + P DFGR+A Sbjct: 69 LDEEGYRILSSKIIVENVESEDHQISLQEVKQVADDAQIGDTVVLDVTPEKEDFGRMAAS 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + + + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 KRDQLPNDNYRANATFKVFLKEVSEVARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVK 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AVSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIK 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D +++N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSINRQKDF 355 ID+ E + Sbjct: 369 KIDVKNSYEYDQETEDSA 386 >gi|237785727|ref|YP_002906432.1| transcription elongation factor NusA [Corynebacterium kroppenstedtii DSM 44385] gi|237758639|gb|ACR17889.1| N utilization substance protein A [Corynebacterium kroppenstedtii DSM 44385] Length = 328 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 120/346 (34%), Positives = 197/346 (56%), Gaps = 31/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ + + + + +A ++ +A G S+ RV+++P+ G +++ +V Sbjct: 5 LSTLRAIERERGVSVEDMTATIAKALLEAWEKSSGGDSEARVDVDPDDGHVAV-----IV 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E ++ I+ P DFGR + ++ ++ +++EAE D+ Sbjct: 60 TERDDEGNVIA-----------------EVDETPSDFGRSFAGTVREAMVARLQEAEADQ 102 Query: 130 QYLEFKDKVGEIISGTVKRVE----YGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y E+ ++++G V+ G VI LG +DG + E I E G R Sbjct: 103 TYEEYASLTSKVVTGIVEADSFARAKGIVIARLGTEAHGNDGTLLPAEQIPGEKYPHGKR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V R RG Q+++SRTHP+F+ +LF +EVPE+ +G V+V +++R+ G R+K+AV Sbjct: 163 LKFYVVNVNRGPRGVQIMISRTHPEFVHRLFELEVPEVADGSVEVVSIAREAGHRSKVAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S+ ++ G+C+G RG RV+A++ EL EKIDI+ + D ATFV N+L P+ V KV V Sbjct: 223 RSTIDGVNAKGSCIGPRGQRVRAIMDELGGEKIDIIDFDEDPATFVGNSLAPSKVLKVEV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 283 VDPEEQVARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDTE 328 >gi|116073742|ref|ZP_01471004.1| transcription elongation factor NusA [Synechococcus sp. RS9916] gi|116069047|gb|EAU74799.1| transcription elongation factor NusA [Synechococcus sp. RS9916] Length = 493 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV S + +++ K + S+ V ++ Sbjct: 9 LSNLIEDISEEKKLPPQVVESALREALLKGYERYRKTLYLGINDDPFDEEYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QI+L +G V + P +FGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEEFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 IDI +E Sbjct: 369 KIDIKNSQEYDQ 380 >gi|124026598|ref|YP_001015713.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL1A] gi|123961666|gb|ABM76449.1| N utilization substance protein A [Prochlorococcus marinus str. NATL1A] Length = 497 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 136/432 (31%), Positives = 217/432 (50%), Gaps = 34/432 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LNNLIEDISEEKKLPSQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +VEEVE+ QI++ +G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEEVESDDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V R GPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPVQYICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 IDI ++E D + E + ++ L AE A EE ++ E+ Sbjct: 369 KIDIKNSQEYDQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEE--DARLRELY 426 Query: 397 SIEGFDEETAVE 408 + +E+ E Sbjct: 427 PLPEDEEDFQNE 438 >gi|254479107|ref|ZP_05092459.1| transcription termination factor NusA [Carboxydibrachium pacificum DSM 12653] gi|214034956|gb|EEB75678.1| transcription termination factor NusA [Carboxydibrachium pacificum DSM 12653] Length = 227 Score = 336 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 113/223 (50%), Positives = 156/223 (69%), Gaps = 1/223 (0%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K Sbjct: 1 EAERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIK 60 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS Sbjct: 61 VYIVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFS 120 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 D ++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V ++D Sbjct: 121 RDPNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVD 180 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 E VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 181 EKEKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 223 >gi|72382861|ref|YP_292216.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL2A] gi|72002711|gb|AAZ58513.1| transcription termination factor NusA [Prochlorococcus marinus str. NATL2A] Length = 497 Score = 336 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 135/432 (31%), Positives = 217/432 (50%), Gaps = 34/432 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LNNLIEDISEEKKLPSQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVGLD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 E + +VE+VE+ QI++ +G V + P DFGR+A Sbjct: 69 LEEEGYRVLASKIIVEDVESDDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V R GPQ+ +SR++ +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSSDPVQYICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDII-TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 IDI ++E D + E + ++ L AE A EE ++ E+ Sbjct: 369 KIDIKNSQEYDQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEE--DARLRELY 426 Query: 397 SIEGFDEETAVE 408 + +E+ E Sbjct: 427 PLPEDEEDFQNE 438 >gi|23336297|ref|ZP_00121520.1| COG0195: Transcription elongation factor [Bifidobacterium longum DJO10A] Length = 310 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 111/298 (37%), Positives = 179/298 (60%), Gaps = 17/298 (5%) Query: 52 EINPETGDISLFRLLEV-VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 E++ +G+ +++ E+ VE E+ P +G D P DFGR+A Sbjct: 2 ELDERSGNFTVWAADEIPVEPTEDNPY-----------PVPKLGEEYDD--TPRDFGRLA 48 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRD 168 +A+QVI Q R AE ++ + F + G++I+G +++ + NV V +G+ + ++ R Sbjct: 49 AATARQVITQLFRRAEDEKVFGSFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRR 108 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 E + E R G+R++ Y+ +V R +GP++++SR+HP+ + KLF EVPE+ +G V + A Sbjct: 109 EQVPGERYRHGERIRVYVVNVARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMA 168 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 ++R+ G+R K+AV ++ ++P GA +G G+RV+AV+ L EKIDIV +S D A FV Sbjct: 169 IAREAGARTKIAVKANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVA 228 Query: 289 NALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 AL PA+ T V V+ E + +QLSLAIG+ GQN RLA++LTGW I I + E Sbjct: 229 AALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAE 286 >gi|170077376|ref|YP_001734014.1| transcription elongation factor NusA [Synechococcus sp. PCC 7002] gi|169885045|gb|ACA98758.1| transcription termination factor NusA [Synechococcus sp. PCC 7002] Length = 420 Score = 334 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 130/381 (34%), Positives = 203/381 (53%), Gaps = 30/381 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-------------YGTMSDIRVEINP 55 L + + ++ ++ + V + +++ K + VE++ Sbjct: 9 LSALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFDNFEVELDL 68 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113 E + +VEEVEN QI+L+ ++ +G V + P DFGR+A Sbjct: 69 EDEGFRVLATKVIVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQ 128 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRR 167 KQV++QK+R+ +R EF++ GE++ V R E V++ + + ++ + R Sbjct: 129 TKQVLLQKLRDQQRKLVQEEFQELEGEVLQARVLRFERNFVVMAVTSAFGQPETEAELPR 188 Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + +N R K Y+ V+ RGPQ+++SR +V LF EVPEI IV++ Sbjct: 189 REQLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPEIEEEIVRI 248 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ W Sbjct: 249 VAVAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRW 308 Query: 280 SPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 SPD AT++ NAL PA V V+ +D + + V+VP+ QLSLAIG+ GQNVRLA++LTGW Sbjct: 309 SPDPATYIANALSPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWK 368 Query: 339 IDIITEEEDSINRQKDFNERT 359 IDI + + + T Sbjct: 369 IDIKDSAKYEAEQAALAEQET 389 >gi|113954345|ref|YP_731568.1| transcription elongation factor NusA [Synechococcus sp. CC9311] gi|113881696|gb|ABI46654.1| transcription termination factor NusA [Synechococcus sp. CC9311] Length = 501 Score = 333 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LSNLIEDISEEKKLAPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +V+EVE+ QI+L G V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E ++I+ + + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D + ++ N+L PA V V ++D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSQDPSQYIANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSIN 350 IDI E Sbjct: 369 KIDIKNSTEYDQT 381 >gi|254992770|ref|ZP_05274960.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-064] Length = 251 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 106/220 (48%), Positives = 155/220 (70%) Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y Sbjct: 1 ERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVY 60 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 61 LTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTAN 120 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 121 EEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEAD 180 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 181 QATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 220 >gi|218439319|ref|YP_002377648.1| transcription elongation factor NusA [Cyanothece sp. PCC 7424] gi|218172047|gb|ACK70780.1| NusA antitermination factor [Cyanothece sp. PCC 7424] Length = 405 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 202/371 (54%), Gaps = 29/371 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SD 48 M N L + D ++ ++ + V + +++ K ++ + + Sbjct: 1 MTIVNLPGLKNMIDEISQRHNLPKSAVHEALREALLKGYERYRRAQSLEKNQFHDDYFEN 60 Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDF 106 VE++ E + ++VE V N ISLK ++ +G V + P +F Sbjct: 61 FDVELDTEEEGFRILSTKKIVEAVSNTDHHISLKEVQEVVSEAQLGDEVVLDVTPDQKEF 120 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS----- 161 GR+A KQV++QK+R+ +R EF+D +++ V R E VI+ + ++ Sbjct: 121 GRMAAIQTKQVLLQKLRDQQRKLIQEEFQDLESTVLTARVLRFERQAVIMAVQSAFGQPE 180 Query: 162 -DGVIRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEI 219 + + + E + +N R K + VR RGPQ+++SR +V LF EVPEI Sbjct: 181 VEAELPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEI 240 Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +V++ AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR E Sbjct: 241 EEEVVRIVAVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGE 300 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 KID++ WSPD +T++ NAL PA V +V+L + D + V+V ++QLSLAIG+ GQNVRLA Sbjct: 301 KIDVIRWSPDPSTYIANALSPARVDEVILTNPDERQALVLVAEDQLSLAIGKEGQNVRLA 360 Query: 332 SQLTGWTIDII 342 ++LTGW IDI Sbjct: 361 ARLTGWKIDIK 371 >gi|306836351|ref|ZP_07469329.1| transcription termination factor NusA [Corynebacterium accolens ATCC 49726] gi|304567711|gb|EFM43298.1| transcription termination factor NusA [Corynebacterium accolens ATCC 49726] Length = 338 Score = 332 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 121/355 (34%), Positives = 198/355 (55%), Gaps = 37/355 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-------IRVEINPETGDISL 62 L+ + E+ + + +L +A ++ + + ++ RV+I+ TG +S+ Sbjct: 5 LEALRTIESERQVPVNDLLEAIASALLYSYLDYRESTAEGKAEGTKFRVDIDTTTGAVSV 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E + T +++ + P +FGRV ++ ++ I++K+ Sbjct: 65 -----IVTERDPETGEVTSE----------------YDDTPDNFGRVGARAVREAILRKL 103 Query: 123 REAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISRE 174 REAE +R + + + G ++SG V+R G V+V LG+ DG++ E I E Sbjct: 104 REAEAERTFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIPGE 163 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ G Sbjct: 164 KLQHGDRIKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIAREAG 223 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL P+ Sbjct: 224 HRSKVAVIGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALAPS 283 Query: 295 IVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V KV VLD + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 284 KVIKVTVLDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|307155148|ref|YP_003890532.1| NusA antitermination factor [Cyanothece sp. PCC 7822] gi|306985376|gb|ADN17257.1| NusA antitermination factor [Cyanothece sp. PCC 7822] Length = 396 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 130/398 (32%), Positives = 210/398 (52%), Gaps = 31/398 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SD 48 M N L + + ++ ++ + V + +++ K ++ + + Sbjct: 1 MSIVNLPGLKNMIEEISQRHNLPKSAVNEALREALLKGYERYRRAQSMEKNQFHDDYFEN 60 Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDF 106 VE++ E + ++VE V N ISL+ + +G V + P +F Sbjct: 61 FDVELDTEEEGFRILSTKKIVESVTNSDHHISLEEVQAVVSEAQLGDEVVLDVTPDQKEF 120 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS----- 161 GR+A KQV++QK+R+ +R EF+D G +++ V R E VI+ + ++ Sbjct: 121 GRMAAIQTKQVLLQKLRDQQRKLIQEEFQDVEGTVLNARVLRFERQAVIMAVQSTFGQPE 180 Query: 162 -DGVIRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEI 219 + + + E + +N R K + VR RGPQ+++SR +V LF EVPEI Sbjct: 181 VEAELPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEI 240 Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +V++ AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR E Sbjct: 241 EEEVVRIVAVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGE 300 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 KID++ WSPD AT++ NAL PA V +V+L + D + ++V ++QLSLAIG+ GQNVRLA Sbjct: 301 KIDVIRWSPDPATYIANALSPARVDEVILTNPDERQALILVAEDQLSLAIGKEGQNVRLA 360 Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 ++LTGW IDI + +K+ + + + V Sbjct: 361 ARLTGWKIDIK--DRALYKAEKEKQQPQDLVQEEVEVT 396 >gi|255325207|ref|ZP_05366313.1| transcription termination factor NusA [Corynebacterium tuberculostearicum SK141] gi|255297772|gb|EET77083.1| transcription termination factor NusA [Corynebacterium tuberculostearicum SK141] Length = 338 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 197/357 (55%), Gaps = 41/357 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60 LQ + E+++ +L +A ++ + + G S RV+I+ TG + Sbjct: 5 LQALRTIESERNVPVKDLLEAIAGALLYSYLDYRESNAGGKVEGAKS--RVDIDATTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ +V E + T +++ + P +FGRV Q+ ++ I++ Sbjct: 63 SV-----IVSERDPETGEVTTE----------------YDDTPENFGRVGAQAVREAILR 101 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETIS 172 K+REAE +R Y + + G ++SG V+R N V+V LG+ DG++ E I Sbjct: 102 KLREAEAERTYDSYSELTGRVVSGIVQRDARANARGIVVVQLGSELESQDGILLPAEQIP 161 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 162 GEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL Sbjct: 222 AGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDFSEDPTVYVGNALA 281 Query: 293 PAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V KV V+D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 282 PSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|19553191|ref|NP_601193.1| transcription elongation factor NusA [Corynebacterium glutamicum ATCC 13032] gi|62390827|ref|YP_226229.1| transcription elongation factor NusA [Corynebacterium glutamicum ATCC 13032] gi|145295891|ref|YP_001138712.1| transcription elongation factor NusA [Corynebacterium glutamicum R] gi|21324757|dbj|BAB99380.1| Transcription terminator [Corynebacterium glutamicum ATCC 13032] gi|41326165|emb|CAF20328.1| PUTATIVE TRANSCRIPTIONAL TERMINATION/ANTITERMINATION FACTOR [Corynebacterium glutamicum ATCC 13032] gi|140845811|dbj|BAF54810.1| hypothetical protein [Corynebacterium glutamicum R] Length = 332 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 126/348 (36%), Positives = 194/348 (55%), Gaps = 35/348 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRL 65 +Q A+ EK I +L +A ++ + T++ RV+I+ TG +++ Sbjct: 5 VQALKAIESEKGIPVPDLLRTIASALLHSYMDNRETVASANLKPRVDIDSTTGTVNV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E D + ++ D P +FGRV+ ++ + I++ +REA Sbjct: 62 --IVSE---------------FDENGELASEYDD--TPSNFGRVSARAVRDAIVKSLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLR 177 E R + + D G ++SG V+ E G +IV LG N DGV+ E I E L+ Sbjct: 103 EASRAFDAYADYEGTVVSGIVQADARAAERGIIIVQLGTEADNQDGVLLPAEQIPGEKLK 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVK ++ V + Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+ Sbjct: 163 HGDRVKCFVVGVGKGNTDIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV + +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V Sbjct: 223 KVAVQAKVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSEDPATFVGNALAPSKVV 282 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 NVEVTDLEAQTARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 330 >gi|313665234|ref|YP_004047105.1| transcription termination factor NusA [Mycoplasma leachii PG50] gi|312949351|gb|ADR23947.1| transcription termination factor NusA [Mycoplasma leachii PG50] Length = 558 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 208/343 (60%), Gaps = 4/343 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123 L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 EAER R Y +F GE++ V + N V D+ + + +++TI+ E + + + Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+AV Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P V ++ Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVIS--IN 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +++VP QLSLAIG++G +L + L I+I + Sbjct: 301 KIGDEYDIVVPDSQLSLAIGKQGITAKLIASLLKTKINIFSYS 343 >gi|303233400|ref|ZP_07320069.1| transcription termination factor NusA [Atopobium vaginae PB189-T1-4] gi|302480529|gb|EFL43620.1| transcription termination factor NusA [Atopobium vaginae PB189-T1-4] Length = 413 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 194/366 (53%), Gaps = 36/366 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ + + +D ++ + ++ K + RV I+ TG + ++ E+ Sbjct: 5 MVEALIDICKKTHLDELYIIDRLEQTLAKNYADILHLEYGARVTIDRATGKVYVY---EL 61 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V + E Q + + + P + R+ VQ KQ + + +R ++R Sbjct: 62 VPKGE-PDEQ-----------TGEYEDFEERDVTPKEASRLVVQHVKQELAEIIRNSQRQ 109 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENLR 177 + Y EF +++G++I+GTV + I+ + + + R+E E Sbjct: 110 QIYEEFSNRIGDLITGTVLQTTSDFAIIKIRDGVEAELPYFDPHRYPEERNERPPHEYYV 169 Query: 178 PGDRVKSYIYDVRR----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 R+ + I DVR E++ P +++SR + + +LF +EVPEIY+G+V ++ Sbjct: 170 HNQRLHALIVDVRNPSSTSAPVRGERQRPSIVVSRARRELISRLFELEVPEIYDGVVTIR 229 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 +V+RD G R+K+AV S D +DPVGACVG +G+RV+ VV+ELR E++D+V W D A V Sbjct: 230 SVARDAGVRSKIAVSSQDPHLDPVGACVGPKGARVRTVVSELRGERVDVVQWYDDPAQNV 289 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +AL PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA+ LTG IDI E Sbjct: 290 ASALSPATVTRVLVDEEHNHATVIVPDDQLSLAIGKGGQNARLAASLTGMHIDIKNESLA 349 Query: 348 SINRQK 353 + + Sbjct: 350 ADILHE 355 >gi|227503407|ref|ZP_03933456.1| transcription elongation factor NusA [Corynebacterium accolens ATCC 49725] gi|227075910|gb|EEI13873.1| transcription elongation factor NusA [Corynebacterium accolens ATCC 49725] Length = 338 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 198/357 (55%), Gaps = 41/357 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60 L+ + E+ + + +L +A ++ + GT S RV+I+ TG + Sbjct: 5 LEALRTIESERQVPVNDLLEAIASALLYSYLDYRESTAEGKAEGTKS--RVDIDTTTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ +V E + T +++ + P +FGRV ++ ++ I++ Sbjct: 63 SV-----IVTERDPETGEVTSE----------------YDDTPDNFGRVGARAVREAILR 101 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETIS 172 K+REAE +R + + + G ++SG V+R G V+V LG+ DG++ E I Sbjct: 102 KLREAEAERTFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIP 161 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L+ GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 162 GEKLQHGDRIKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL Sbjct: 222 AGHRSKVAVIGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALA 281 Query: 293 PAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V KV VLD + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 282 PSKVIKVTVLDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|159027908|emb|CAO89715.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 398 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 129/401 (32%), Positives = 213/401 (53%), Gaps = 33/401 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM--S 47 M + N L + + ++ ++ ++ V + +++ K + + Sbjct: 1 MATVNLPGLKIMLEEISQRHNLPKNAVQEALREALIKGYERYRRSQSLEKAAQFHEDYFN 60 Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--D 105 + VE++ E + +VEEV N I LK ++ +G V + P + Sbjct: 61 NFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEAQLGDEVVLDVTPDQRE 120 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS---- 161 FGR+A KQV++QK+R+ +R EF+D G ++ V R E IV + ++ Sbjct: 121 FGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRFERQAAIVMVQSTYGQP 180 Query: 162 --DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 + + + E + +N R K + V QRGPQ+++SR +V LF EVPE Sbjct: 181 EVEAELPKREQLPNDNYRANATFKVLLKKVLEGSQRGPQLIVSRAAAGLVVYLFANEVPE 240 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I IV++ AV+R+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR Sbjct: 241 IEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 300 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA + +V+ + + + V+V ++QLSLAIG+ GQNVRL Sbjct: 301 EKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQDQLSLAIGKEGQNVRL 360 Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 A++LTGW IDI + ++ + + + + +A ++D+ Sbjct: 361 AARLTGWKIDIK---DIALYKGEQEVKTDETDPEAQDLDQE 398 >gi|227833356|ref|YP_002835063.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC 700975] gi|262184342|ref|ZP_06043763.1| transcription elongation factor NusA [Corynebacterium aurimucosum ATCC 700975] gi|227454372|gb|ACP33125.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC 700975] Length = 338 Score = 330 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 193/354 (54%), Gaps = 41/354 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60 L+ + E+ + +L +A ++ + GT S RV+I+ ++G + Sbjct: 5 LEALRTIQRERGVPVKDLLEAIAGALLYSYLDHRAESAETKAEGTKS--RVDIDADSGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +V E + T ++ + P +FGR+ Q+ + I++ Sbjct: 63 TV-----IVTESDRETGEV----------------ISEYDDTPDNFGRIGAQAVRDAILR 101 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETIS 172 K+RE E +R Y + + G ++SG V+R G V+V LG + D + E + Sbjct: 102 KLRENEAERTYDSYSELTGTVVSGVVQRDIHANNRGVVVVQLGTEHDSQDAFLLPAEQLP 161 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L GDRVK+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 162 GEKLEHGDRVKAYVVGVNRNGAKVQITLSRTHPELVRGLFELEVPEVADGAVEIIAIARE 221 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K++V ++ GAC+G +GSRV V+ EL EKIDI+ ++ D A +V NAL Sbjct: 222 AGHRSKISVRGHAKGLNAKGACIGPKGSRVSNVMRELGGEKIDIIDFNEDPAVYVGNALA 281 Query: 293 PAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 P+ V +V +LDE+ +V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 282 PSKVVRVEILDEEAQVAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDA 335 >gi|225021163|ref|ZP_03710355.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii ATCC 33806] gi|305681535|ref|ZP_07404342.1| transcription termination factor NusA [Corynebacterium matruchotii ATCC 14266] gi|224946070|gb|EEG27279.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii ATCC 33806] gi|305659740|gb|EFM49240.1| transcription termination factor NusA [Corynebacterium matruchotii ATCC 14266] Length = 332 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 117/349 (33%), Positives = 190/349 (54%), Gaps = 35/349 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR--SLYGTMSD--IRVEINPETGDISLFRL 65 +Q A+ EK I V+L +A ++ A R + RV+I+ TG +++ Sbjct: 5 VQALKAIETEKGISVQVLLETIASALMHAYREYKDAPPAPNTQARVDIDIATGAVAV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++ E+++ V ++ D P +F R+ + + I++++REA Sbjct: 62 --IISELDDEGN-----VVQEHDD------------TPANFERIGTVAVRDAIVKRLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLR 177 E + Y + + G ++SG V+ E G V+V LG DG++ E I E L+ Sbjct: 103 ETRQAYDAYSEYEGRVVSGVVQADIHANERGIVVVHLGTEADGQDGILLPAEQIPGEQLK 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVKS++ V + LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+ Sbjct: 163 HGDRVKSFVVGVNHNSHSLSINLSRTHPELVRRLFELEIPEVADGSVEIVSIAREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV + ++ GAC+G RG RV ++ EL EKIDI+ +S + A +V NAL P+ V Sbjct: 223 KVAVRARVKGLNAKGACIGPRGQRVTNIMKELNGEKIDIIDYSDNPAEYVGNALAPSKVV 282 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V ++D V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 DVEIIDATAQTARVTVPHYQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331 >gi|166364176|ref|YP_001656449.1| transcription elongation factor NusA [Microcystis aeruginosa NIES-843] gi|166086549|dbj|BAG01257.1| transcription termination factor [Microcystis aeruginosa NIES-843] Length = 398 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 199/372 (53%), Gaps = 30/372 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM--S 47 M + N L + + ++ ++ ++ V + +++ K + + Sbjct: 1 MATVNLPGLKIMLEEISQRHNLPKNAVQEALREALIKGYERYRRAQSLEKAAQFHEDYFN 60 Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MD 105 + VE++ E + +VEEV N I LK ++ +G V + P + Sbjct: 61 NFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEAQLGDEVVLDVTPDQKE 120 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS---- 161 FGR+A KQV++QK+R+ +R EF+D G ++ V R E IV + ++ Sbjct: 121 FGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRFERQAAIVMVQSTYGQP 180 Query: 162 --DGVIRRDETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPE 218 + + + E + +N R K + V RGPQ+++SR +V LF EVPE Sbjct: 181 EVEAELPKREQLPNDNYRANATFKVLLKKVLEGSHRGPQLIVSRAAAGLVVYLFANEVPE 240 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I IV++ AV+R+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR Sbjct: 241 IEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 300 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA + +V+ + + + V+V ++QLSLAIG+ GQNVRL Sbjct: 301 EKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQDQLSLAIGKEGQNVRL 360 Query: 331 ASQLTGWTIDII 342 A++LTGW IDI Sbjct: 361 AARLTGWKIDIK 372 >gi|311739681|ref|ZP_07713516.1| transcription termination factor NusA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305497|gb|EFQ81565.1| transcription termination factor NusA [Corynebacterium pseudogenitalium ATCC 33035] Length = 338 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 197/357 (55%), Gaps = 41/357 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60 LQ + E+S+ +L +A ++ + + G S RV+I+ TG + Sbjct: 5 LQALRTIESERSVPVKDLLEAIAGALLYSYLDYRESNAGGKVEGAKS--RVDIDATTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ +V E + T +++ + P +FGRV Q+ ++ I++ Sbjct: 63 SV-----IVSERDPETGEVTTE----------------YDDTPENFGRVGAQAVREAILR 101 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETIS 172 K+REAE +R + + + G ++SG V+R N V+V LG+ DG++ E I Sbjct: 102 KLREAEAERTFDSYSELTGRVVSGIVQRDARANARGIVVVQLGSELESQDGILLPAEQIP 161 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 162 GEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL Sbjct: 222 AGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDFSEDPTVYVGNALA 281 Query: 293 PAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V KV V+D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 282 PSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|83319641|ref|YP_424320.1| transcription elongation factor NusA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283527|gb|ABC01459.1| transcription elongation protein nusA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 558 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 116/343 (33%), Positives = 207/343 (60%), Gaps = 4/343 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123 L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRV 182 EAER R Y +F GE++ V + N V D+ + + +++TI+ E + + + Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++K VSR+PG R+K+AV Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P V ++ Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVIS--IN 300 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + +++VP QLSLAIG++G +L + L I+I + Sbjct: 301 KIGDEYDIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFSYS 343 >gi|332707468|ref|ZP_08427516.1| NusA antitermination factor [Lyngbya majuscula 3L] gi|332353765|gb|EGJ33257.1| NusA antitermination factor [Lyngbya majuscula 3L] Length = 369 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 114/349 (32%), Positives = 185/349 (53%), Gaps = 30/349 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--SDIRVEINP 55 L + + ++ ++ R V + +++ K + + V+++ Sbjct: 9 LKAMIEEISQSHNLPRSAVQQALREALLKGYERYRRSQRLDQRFHFDEEYFDNFEVDLDI 68 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113 E + +VEEV+N QISLK ++ +G V + P +FGR+A Sbjct: 69 EEEGFRVLSTKTIVEEVQNSDHQISLKEVQEVASEAQLGDSVVLDVTPDQGEFGRMAAIQ 128 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRR 167 KQV+ QK+R+ +R EF+D G ++ R E +VI+ L + + + + Sbjct: 129 TKQVLSQKLRDQQRKLIKEEFQDLEGTVLQSRSLRFEQQSVIMALSSGFGRPEVEAELPK 188 Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + +N R K Y+ VR RGPQ+++SR +V LF EVPEI + +V++ Sbjct: 189 REQLPNDNYRINSTFKVYLKKVREGPHRGPQLVVSRAAAGLVVDLFSNEVPEIDDEVVRI 248 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ W Sbjct: 249 VAVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRW 308 Query: 280 SPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 SPD +T++ NAL PA V +V +++ + + V+V ++QLSLAIG+ GQN Sbjct: 309 SPDPSTYIANALSPAQVDQVLLVNPEERQAHVLVAEDQLSLAIGKEGQN 357 >gi|255323481|ref|ZP_05364612.1| transcription termination factor NusA [Campylobacter showae RM3277] gi|255299518|gb|EET78804.1| transcription termination factor NusA [Campylobacter showae RM3277] Length = 366 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 112/362 (30%), Positives = 197/362 (54%), Gaps = 8/362 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + Sbjct: 3 KIADIIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDNATKTLHLYQKIT 62 Query: 68 VVEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ E+ +S+ A+ D ++IG ++ L + GR A Q+ + + + Sbjct: 63 VVEDGDERLAEDNEHFLSISEAKKVDSGVEIGDELTYELSTDNLGRTAAQTLHKELEYHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + ++ + +++D VG ++ G+V RV+ N +++ V+ R I E +PGD Sbjct: 123 QRLMEEKIFQKYQDMVGHMVFGSVTRVDSDENTFIEIDELRAVMPRKNRIKGEKFKPGDV 182 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+ I V ++ G +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A Sbjct: 183 VKAVIKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + ++ ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V Sbjct: 243 LVATSPNVDPVGATVGTKGVRINAVTKELNGENIDAIEYSAEPAILITRAMAPAIISSVK 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + ED + +V EQ S AIG+ G N+RLAS LTG I++ ++ ++ + Sbjct: 303 IGEDNKAVVSLVT-EQKSKAIGKSGINIRLASMLTGHEIELNELGARGESKDENAKDLKA 361 Query: 361 FF 362 F Sbjct: 362 LF 363 >gi|16329287|ref|NP_440015.1| transcription elongation factor NusA [Synechocystis sp. PCC 6803] gi|1651767|dbj|BAA16695.1| N utilization substance protein [Synechocystis sp. PCC 6803] Length = 458 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 200/369 (54%), Gaps = 28/369 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-----------SDIRVEINPETGDI 60 + ++ ++ V + +++ K + ++ VE++ E Sbjct: 12 MISEISKRNNLPTTAVEEALREALLKGYERFRRSQLMGHQFPEEYFNNFEVELDTEEEGF 71 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVI 118 + +VEEVEN QISLK + +G V + P DFGR+A KQV+ Sbjct: 72 RVLSTKRIVEEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQKDFGRMAAIQTKQVL 131 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN------SDGVIRRDETIS 172 +QK+R+ +R EF+D G +++ R E ++IV + + + + + E + Sbjct: 132 LQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKREQLP 191 Query: 173 RENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 +N R + Y+ VR QRGPQ+++SR +V LF +EVPEI +V++ AV+R Sbjct: 192 NDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVAVAR 251 Query: 232 DP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 + G R K+AV + + +DPVGAC+G RGSR+ AVV ELR EKID++ WSPD A Sbjct: 252 EAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSPDPA 311 Query: 285 TFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 T++ AL PA V +V ++ + VIV ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 TYIAQALSPARVDQVYLIHAEERHALVIVAEDQLSLAIGKEGQNVRLAARLTGWKIDIKD 371 Query: 344 EEEDSINRQ 352 E + +++ Sbjct: 372 PETYARDKE 380 >gi|300780963|ref|ZP_07090817.1| transcription termination factor NusA [Corynebacterium genitalium ATCC 33030] gi|300532670|gb|EFK53731.1| transcription termination factor NusA [Corynebacterium genitalium ATCC 33030] Length = 341 Score = 327 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 190/359 (52%), Gaps = 39/359 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARS--------LYGTMSDIRVEINPETGDIS 61 + + E I D +L +A ++ A R G + RV+I+ +TG ++ Sbjct: 5 IAALKQIESEAGIPVDDLLGTIASALLFAYREGKDEFGTGAAGEGTKARVDIDTQTGAVA 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V E+++ IS P++F RV Q+ + I+++ Sbjct: 65 VM-----VSELDDDGNVIS-----------------EYDDTPVNFSRVGAQAVRDAILKR 102 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISR 173 +R A +R Y + + G+++SG V+R E G V+V LG DG++ E I Sbjct: 103 MRTAADNRAYSAYSELEGQVVSGVVQRDASANERGIVVVQLGTESDPQDGILLPAEQIPG 162 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E L GDRVK Y+ V R V LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 163 EKLEHGDRVKCYVVGVSGGDRRTTVNLSRTHPELVRGLFALEVPEVADGSVEIVAIAREA 222 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R+K+AV I+ GAC+G RG+RV ++ L EKIDIV +S D A +V N+L P Sbjct: 223 GHRSKVAVKGVAKGINAKGACIGPRGARVTNIMESLGGEKIDIVDYSDDPAVYVGNSLAP 282 Query: 294 AI-VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 + V V+D D V+VP QLSLAIGR GQN RLA++LTGW IDI ++ + S + Sbjct: 283 SKVVRVDVVDHDAQTARVVVPDYQLSLAIGREGQNARLAARLTGWKIDIHSDADLSAGQ 341 >gi|268679068|ref|YP_003303499.1| transcription termination factor NusA [Sulfurospirillum deleyianum DSM 6946] gi|268617099|gb|ACZ11464.1| transcription termination factor NusA [Sulfurospirillum deleyianum DSM 6946] Length = 374 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 192/341 (56%), Gaps = 9/341 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I +++A+EK +D + V + + ++ K A+ +YG + EI+ T + L++ + Sbjct: 3 KIVDIIESIAHEKGLDINEVRNTVTMALVKTAKKIYGAEYEYGAEIDSATKTLKLYQKVI 62 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + I++K A++ DP I+IG ++ LP + GR A + ++ + + Sbjct: 63 VVSPDDERLLDGNENFIAIKEAKEVDPEIEIGDELTYELPLDNLGRTAAATLQRELEYHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + +++ VG+ + G+V RV+ N +++ V+ R I E + G+ Sbjct: 123 QRLLEHNIFDKYQKMVGKTVFGSVVRVDNDENTYIEIDEIRAVLPRKNRIKGEKFKVGNV 182 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VKS I V ++ +G V LSRT P+F+ L +EVPEI +G++++ +R PG RAK++ Sbjct: 183 VKSVIRKVLIDKAQGMYVELSRTSPKFLESLLELEVPEIKDGLIKIMGSARIPGERAKIS 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + S +ID VGA VG +G+R+ AV EL +E ID + +S F+ AL PAI++ V Sbjct: 243 LVSFHPNIDAVGATVGTKGARINAVSKELHNENIDCIEFSSVPEIFISRALSPAIISNVK 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + V +P +Q S AIG+ G N+RL S LTG+ I++ Sbjct: 303 I--QNNKAIVTLPSDQKSKAIGKNGINIRLTSMLTGFEIEL 341 >gi|331703354|ref|YP_004400041.1| transcriptional terminator [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801909|emb|CBW54062.1| Transcriptional terminator [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 584 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 116/345 (33%), Positives = 204/345 (59%), Gaps = 6/345 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V + N V D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVIS-- 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +++ +++VP QLSLAIG++G +L + L I+I + Sbjct: 301 INKIGDEYDIVVPDSQLSLAIGKQGVAAKLIASLLKTKINIFSYS 345 >gi|223040803|ref|ZP_03611069.1| transcription termination factor NusA [Campylobacter rectus RM3267] gi|222877902|gb|EEF13017.1| transcription termination factor NusA [Campylobacter rectus RM3267] Length = 366 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 107/361 (29%), Positives = 196/361 (54%), Gaps = 8/361 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + V Sbjct: 4 IADIIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDSSTKSLHLYQKITV 63 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VE+ E+ + + A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 64 VEDGDERLAEDNEHFLGVSEAKKVDAGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ + ++++ +G+++ G+V RV+ N +++ V+ R I E +PGD V Sbjct: 124 RLMEEKIFQKYQEMIGQMVFGSVTRVDSEENTFIEIDELRAVMSRKNRIKGEKFKPGDVV 183 Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ G +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+ Sbjct: 184 KAVIKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVAL 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V + Sbjct: 244 VATSPNVDPVGATVGTKGVRINAVTNELSGENIDAIEYSAEPAILITRAMSPAIISSVKI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 + + V + EQ S AIG+ G N+RLAS LTG+ I++ ++ ++ + Sbjct: 304 TD-ENKAVVSLASEQKSKAIGKSGINIRLASMLTGYEIELNELGTKGESKNENAKDLKAL 362 Query: 362 F 362 F Sbjct: 363 F 363 >gi|76496360|gb|ABA43691.1| NusA [Acholeplasma palmae] Length = 363 Score = 325 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 185/363 (50%), Gaps = 17/363 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S + +AVA E+ +++D VL + + +G S RVEI + +I Sbjct: 1 MISKD---FFNTIEAVADERGLNKDQVLEAFEKGLIAGCKKAHGVRS-CRVEIKEDKSEI 56 Query: 61 SLFRLLEVVEE---VEN--------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV 109 L++ V++E E+ I+++ A++ + G ++ + P DF Sbjct: 57 LLYKQYYVLDEDTLEEDMTSNPLNKEYTFITVEDAKEMKTRVKPGQLIEIKVDPKDFNLY 116 Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-VIRRD 168 A++ K +++ +++ Y FK E+++ V V+ ++L ++ + Sbjct: 117 AIKDFKNRFNEELTNKQKETIYNHFKAVEHEMVTARVTDVDDNYYKLELEKEMTTLLPKK 176 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 E + + DR+K YI +V+ + P+V +SR + +L VPEI GI+ + Sbjct: 177 EALPNDVFHVNDRIKVYITEVQSTTKWPKVFVSRVQNGLITRLLEELVPEIKEGIISIMG 236 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 +SRD G R+K+ V S D +DP+GACVG G R++ +V + EKID+ WS + + Sbjct: 237 ISRDAGDRSKIGVRSEDPKVDPIGACVGEGGQRIREIVKAISGEKIDLFRWSDNEQELIA 296 Query: 289 NALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NAL+PA V V ++ IVP +QLSLAIG+ GQNV+LA Q +GW+IDI +E + Sbjct: 297 NALQPAKVVAVTKVNPKEKSALAIVPDDQLSLAIGKLGQNVKLAVQASGWSIDIKSETQA 356 Query: 348 SIN 350 Sbjct: 357 QQE 359 >gi|237752704|ref|ZP_04583184.1| transcription elongation factor NusA [Helicobacter winghamensis ATCC BAA-430] gi|229376193|gb|EEO26284.1| transcription elongation factor NusA [Helicobacter winghamensis ATCC BAA-430] Length = 371 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 195/366 (53%), Gaps = 9/366 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + + V + D++ K A+ + VEI+ + + L++++ Sbjct: 3 KILDIIEGIAYEKGLPIESVTDAVKDAVIKVAKESLDSTIHYDVEIDKKNKTLHLYQVIS 62 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E+ + + I L A+ D I IG + L D R AV + + + K++ Sbjct: 63 VCEDSDALDGKNMIPLSEAKKHDSEIKIGDELRYELSLEDMSRNAVNALFRELEFKIQRL 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + + ++K ++G+I+SG V R + GN +++ ++ + I E G V + Sbjct: 123 IETQLFDKYKSQIGKIVSGNVVRADSLGNTYIEIDEIRAILPKKNRIKGEEFGVGQIVGA 182 Query: 185 YIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V + Q G + LSRT P+ + +L +EVPEI +G V++ SR PG RAK+A+ + Sbjct: 183 VLKHVGIDRQNGIMIELSRTTPKMLEELLKLEVPEIKDGDVEIVNSSRIPGERAKVALKT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA+V V +++ Sbjct: 243 DSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSVQPEIYIARALSPALVISVAVED 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V + EQ AIG+ G N+RLAS LTG+ I++ E Q+ + TQ Sbjct: 303 --KKAIVSITSEQKPKAIGKNGINIRLASMLTGYEIELK---EIDSGTQQVSSNSTQETQ 357 Query: 364 QAINVD 369 ++ N+D Sbjct: 358 KSSNID 363 >gi|301320952|gb|ADK69595.1| transcription termination factor NusA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 584 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 115/345 (33%), Positives = 204/345 (59%), Gaps = 6/345 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ + + N V D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVIS-- 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +++ +++VP QLSLAIG++G +L + L I+I + Sbjct: 301 INKIGDEYDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYS 345 >gi|68536221|ref|YP_250926.1| transcription elongation factor NusA [Corynebacterium jeikeium K411] gi|68263820|emb|CAI37308.1| N utilization substance protein A [Corynebacterium jeikeium K411] Length = 337 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 121/351 (34%), Positives = 192/351 (54%), Gaps = 32/351 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + AV ++S+D D +L + +++A R+ + V+I+P +G+++++++ Sbjct: 5 MAALRAVEKQESVDFDDLLEGVKRGLREAYRAKSHFTGPVDVDIDPISGEVTIYQV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D ++ G + D P +FGR + ++ I ++ A Sbjct: 61 ----------------EKDEEGNVTGRIDD--TPKNFGRDGALAVREAIRFRINSARVQN 102 Query: 130 QYLEFKDKVGEIISGTV----KRVEYGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 +Y E+ + ++SG V + E G IV LG DG I E I E L G R Sbjct: 103 RYDEYAELRYRVVSGVVSADARANERGVTIVHLGTEANGQDGQILPAEHIPGEELEHGMR 162 Query: 182 VKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+++ DV R Q+ LSRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+A Sbjct: 163 VKAFVTDVINNANRMVQINLSRTHPELVKGLFSLEVPEVADGSVEIVSVAREAGHRTKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+ ++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V V Sbjct: 223 VRSTVKGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDDPATFVGNALSPSKVVSVK 282 Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + D ++ +VP QLSLAIGR GQN RLA++LTGW IDI +E + + Sbjct: 283 VTDPEMQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDIRSETDAAAE 333 >gi|227504824|ref|ZP_03934873.1| transcription elongation factor NusA [Corynebacterium striatum ATCC 6940] gi|227198674|gb|EEI78722.1| transcription elongation factor NusA [Corynebacterium striatum ATCC 6940] Length = 338 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 194/355 (54%), Gaps = 43/355 (12%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQ---------KAARSLYGTMSDIRVEINPETGDI 60 L+ + E+ I +L +A ++ AA GT S RV+I+ +TG + Sbjct: 5 LEALRTIESERGIQVKDLLEAIAGALLYSYLDYREQSAAGKSEGTKS--RVDIDADTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVII 119 ++ +V E + G V+S+ P +F RV Q+ ++ II Sbjct: 63 TV-----IVTE-----------------SDPETGEVISEYDDTPENFSRVGAQAVREAII 100 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETI 171 +K+REAE + Y + + G ++SG V+R E G V+V LG + D ++ E + Sbjct: 101 RKLREAEAEVTYESYSELTGRVVSGIVQRDVRANERGVVVVQLGTELDSQDAILLPAEQL 160 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +E+PE+ +G V++ A++R Sbjct: 161 PGEKLEHGDRIKAYVVGVTRNGAQVQITLSRTHPELVRGLFELEIPEVGDGAVELVAIAR 220 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + G R+K++V ++ GAC+G RG RV ++ EL EKIDI+ ++ D A +V N+L Sbjct: 221 EAGHRSKVSVIGHAKGLNAKGACIGPRGERVNNIMRELGGEKIDIIDYNEDPAVYVGNSL 280 Query: 292 RPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 P+ V +V V+D D V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 281 APSKVVRVEVVDPDAQVARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDA 335 >gi|242308920|ref|ZP_04808075.1| transcription elongation factor NusA [Helicobacter pullorum MIT 98-5489] gi|239524584|gb|EEQ64450.1| transcription elongation factor NusA [Helicobacter pullorum MIT 98-5489] Length = 373 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 112/371 (30%), Positives = 196/371 (52%), Gaps = 18/371 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + ++YEK + + V V+ +S+ K A+ EI+ + + L++++ Sbjct: 3 KILDIIEGISYEKGLPIESVAEVVKESVIKVAKQTLDPNISYDAEIDKKNKTLHLYQVIS 62 Query: 68 VVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + +N + I L AR D I +G + L + R AV + + + K+ Sbjct: 63 VCADDDNNAKEDKEHFIPLCEARKHDSEIKVGDELRYELSLENMNRSAVNALFRELEFKI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + + ++K +VG+I+SG+V R++ GN V++ ++ + I E R G Sbjct: 123 QRLIETQLFDKYKAQVGKIVSGSVVRIDDLGNTFVEIDEVRAILPKKNRIKGEEFRIGQV 182 Query: 182 VKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + V + Q G + LSRT P+ + +L +EVPEI +G V++ + +R PG RAK+A Sbjct: 183 VGAILKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVSCARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + + + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV Sbjct: 243 LKTDSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSSQPEIYIARALSPALIVSVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII---------TEEEDSINR 351 +++ R V + EQ AIG+ G NVRLAS LTG+ I++ +E N Sbjct: 303 VED--KRAIVTISNEQKPKAIGKNGINVRLASMLTGYEIELKEIGAGNLQNSEHIHQENE 360 Query: 352 QKDFNERTQFF 362 + D + + F Sbjct: 361 KNDLDILSSLF 371 >gi|193214185|ref|YP_001995384.1| transcription elongation factor NusA [Chloroherpeton thalassium ATCC 35110] gi|193087662|gb|ACF12937.1| NusA antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 531 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 215/395 (54%), Gaps = 29/395 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 ++ ++ D+IQK R Y + RV INP+ GD ++ L +VVEE++ + +ISL+ A++ Sbjct: 45 IVDLLRDTIQKQLRKDYDPEVEARVIINPDRGDFEVYILKQVVEEIDLPSIEISLEEAQE 104 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G P+ D+ R ++Q KQ + +K+R+AER Y E +KVGE++S Sbjct: 105 IDDSLELGDFYEVGPIHLEDYLTRKSIQIIKQAVQKKMRDAERQAIYEECLEKVGEVVSA 164 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR----- 194 V +V I + ++ E + ++N R R++ Y+ + RE+ Sbjct: 165 EVHQVRQKEAIFTYNTTKDHKVELLLPNTEKMPKDNPRKTPRMRLYVKRIEREKIRVKLE 224 Query: 195 -----------GP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 GP +V++SRT +F+ KLF EVPEIY G++ VK ++R PG RAK++V Sbjct: 225 DGTEVEREREDGPMKVIVSRTDDRFLHKLFESEVPEIYEGLIVVKGIARVPGERAKVSVE 284 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ S IDPVGACVG RG R+Q +V EL +E ID++ +S + ++ AL+PA + V Sbjct: 285 STSSRIDPVGACVGHRGKRIQNIVRELNNENIDVICFSDEPQIYIARALQPAKIDPMTVH 344 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D + V++ +Q+ AIGR G N+ LA +LTG+ I+I + D D + Sbjct: 345 VDPKTRKSRVMLKPDQIKYAIGRNGNNIHLAEKLTGYEIEIYRDISDKALEDPDDIDIIS 404 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 F + + + L+ GF +++ + I Sbjct: 405 F---REEFGDDMIYQLLDNGFDTAKKILEAGVDAI 436 >gi|300858700|ref|YP_003783683.1| transcription elongation protein [Corynebacterium pseudotuberculosis FRC41] gi|300686154|gb|ADK29076.1| transcription elongation protein [Corynebacterium pseudotuberculosis FRC41] gi|302206410|gb|ADL10752.1| Transcription elongation protein [Corynebacterium pseudotuberculosis C231] gi|302330966|gb|ADL21160.1| Transcription elongation protein [Corynebacterium pseudotuberculosis 1002] gi|308276653|gb|ADO26552.1| Transcription elongation protein [Corynebacterium pseudotuberculosis I19] Length = 332 Score = 324 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 116/349 (33%), Positives = 188/349 (53%), Gaps = 35/349 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR----SLYGTMSDIRVEINPETGDISLFRL 65 + + E+ + + ++ +A ++ + R + + RV+I+ TG +S+ Sbjct: 5 IHALKLIESERKVPVEELIETIARALLFSYREFKDTNVEENTRARVDISATTGLVSV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E++ +S P +FGRV Q+ + I +++REA Sbjct: 62 --IVSELDEEGNVLS-----------------EYDDTPANFGRVGAQAVRDAIKKRLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLR 177 E + Y + + G ++SG V+ E G +V LG DG++ E I E L Sbjct: 103 ETWKAYDAYSEYEGRVVSGIVQADAYANERGITVVHLGTEAEGQDGILIPAEQIPGEKLV 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVK Y+ V R R Q+ LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+ Sbjct: 163 HGDRVKCYVVGVNRTPRNLQINLSRTHPELVRRLFELEIPEVADGSVEIISIAREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++ ++ GAC+G RG RV ++ EL EKIDI+ + D A +V NAL P+ V Sbjct: 223 KVAVRANIKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDEDPAKYVGNALAPSKVV 282 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + D + +V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 HVEITDLEGQAAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331 >gi|25028436|ref|NP_738490.1| transcription elongation factor NusA [Corynebacterium efficiens YS-314] gi|23493721|dbj|BAC18690.1| putative transcriptional termination/antitermination factor [Corynebacterium efficiens YS-314] Length = 359 Score = 324 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 124/348 (35%), Positives = 201/348 (57%), Gaps = 35/348 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDISLFRL 65 +Q A+ EK I + ++ +A+++ + + S RV+I+ TG +++ Sbjct: 32 VQALRAIEKEKGIRVEDMIRTIANALLHSYLDNRESDVPESSKARVDIDVSTGAVAV--- 88 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E ++ S P +FGRV+ ++ + I++++REA Sbjct: 89 --IVTEFDDEGTISS-----------------EYDDTPSNFGRVSARAVRDAIVRRLREA 129 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLR 177 E +R + + + G ++SG V+ E G V+V LG + DG++ E I E L+ Sbjct: 130 EAERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQLGTETDSQDGILLPAEQIPGEKLK 189 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVKSY+ V + G Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+ Sbjct: 190 HGDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRS 249 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++ +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V Sbjct: 250 KVAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSDDPATFVGNALAPSKVV 309 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V ++D + +V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 310 SVEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 357 >gi|256384305|gb|ACU78875.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. capri str. GM12] gi|256385138|gb|ACU79707.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455871|gb|ADH22106.1| transcription elongation factor NusA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 584 Score = 323 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 116/345 (33%), Positives = 204/345 (59%), Gaps = 6/345 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V + N V D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVIS-- 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +++ +++VP QLSLAIG++G +L + L I+I + Sbjct: 301 INKIGDEYDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYS 345 >gi|322379095|ref|ZP_08053497.1| transcription elongation factor NusA [Helicobacter suis HS1] gi|322381039|ref|ZP_08055069.1| transcription elongation factor NusA [Helicobacter suis HS5] gi|321146533|gb|EFX41403.1| transcription elongation factor NusA [Helicobacter suis HS5] gi|321148467|gb|EFX42965.1| transcription elongation factor NusA [Helicobacter suis HS1] Length = 384 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 197/368 (53%), Gaps = 13/368 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + + + V+ +SI K A+S T ++ I+ D++L ++E Sbjct: 13 KILDIVELIAYEKGLSLETIKDVVKNSILKVAQSCLDTEANFV--IDDSNKDLALLHVVE 70 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + + + +SLK A DPS+ ++ + D R AV + + + + Sbjct: 71 VCADGDPKLEQDPKNTLSLKEAHKSDPSLKPNDLLHYEISLKDMKRGAVNTLFKDLEYNI 130 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + D+ + ++K + I++G V ++ N +++ ++ I E+ + G+ Sbjct: 131 QRSLEDQYFQKYKSMLNTIVTGVVLDIDANQNTYIEIDGLQAILALKNRIKGESFKVGNS 190 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + +VR ++G + LSRT P+F+ L +EVPEI + ++V ++R PG RAKLA+ Sbjct: 191 VRAILKNVRFSKQGLVLELSRTTPKFLEALLRLEVPEIADEEIEVMGIARIPGDRAKLAL 250 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S +S IDP+GA VG++G R+ A+ EL +E ID V ++ ++ N L PA ++ L Sbjct: 251 RSHNSQIDPIGATVGVKGVRINAISKELCNESIDCVHYNDIPEIYIANTLSPAQTIRIKL 310 Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID---IITEEEDSINRQKDFN 356 E+ R V + +Q S AIG+ G NVRLA LTG+ ID + ++E +++ + Sbjct: 311 SEEQGEKRALVTLYGDQKSKAIGKNGVNVRLACMLTGYNIDFEVLESKENMPKDQKVGLS 370 Query: 357 ERTQFFMQ 364 F + Sbjct: 371 MLESLFAK 378 >gi|315452942|ref|YP_004073212.1| transcription termination factor NusA [Helicobacter felis ATCC 49179] gi|315131994|emb|CBY82622.1| transcription termination factor NusA [Helicobacter felis ATCC 49179] Length = 376 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 189/367 (51%), Gaps = 14/367 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + ++V V+ +SI K A++ ++ I+ D +L ++E Sbjct: 3 KILDIVELIAYEKGLSLEMVKEVVKNSILKVAKNTIDPQANF--MIDDSNKDFTLLHVVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + V + T ++L DPS+ ++ + D R AV + + + + Sbjct: 61 VCADDDPRLVADPTNTLALTEVLKDDPSLKPNDLLHYEISLKDMKRGAVNALFKDLEFNI 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + D+ + ++K + I+ G V ++ N V++ V+ I E+ + GD Sbjct: 121 QRSLEDQYFQKYKGMLNTIVRGVVLDIDKNQNTFVEIEGVQAVLALRNRIKGESFKVGDT 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V ++G + LSRT P+F+ L H+EVPEI + +++ ++R PG RAKLA+ Sbjct: 181 LRAILKSVHFSKQGLVLELSRTTPKFLEALLHLEVPEIADKEIEIMGIARIPGDRAKLAL 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S + IDP+GA VG++G R+ A+ EL +E ID V ++ ++ NAL PA + K+ L Sbjct: 241 RSHNVHIDPIGATVGVKGIRINAISKELCNESIDCVHYNEVPEIYIANALSPANIVKIEL 300 Query: 302 ------DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 D+ V + +Q S AIG+ G NVRLA LTG+ ID E+ ++ Sbjct: 301 SQKTLEDKIQKNALVTLQADQKSKAIGKSGVNVRLACMLTGYEIDFNVLAEEESPKKSGL 360 Query: 356 NERTQFF 362 + F Sbjct: 361 SMLESLF 367 >gi|42560896|ref|NP_975347.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492393|emb|CAE76989.1| transcriptional terminator [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 584 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 114/345 (33%), Positives = 203/345 (58%), Gaps = 6/345 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I I + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIDDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ + + N V D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVIS-- 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +++ +++VP QLSLAIG++G +L + L I+I + Sbjct: 301 INKIGDEYDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYS 345 >gi|172040528|ref|YP_001800242.1| transcription elongation factor NusA [Corynebacterium urealyticum DSM 7109] gi|171851832|emb|CAQ04808.1| N utilization substance protein A [Corynebacterium urealyticum DSM 7109] Length = 332 Score = 322 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 194/350 (55%), Gaps = 32/350 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ ++ + D ++ +A+ +++A R+ ++ V+I+P +G ++++++ Sbjct: 5 LATLRAIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD ++ G + + P +F R + ++ I +++ A + Sbjct: 61 ----------------ERDEEGNVTGRLDE--TPENFDRTTALAMREAIRRRIGGARVQQ 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 +Y E+ I+SG V R E G +V +G DG I E I E L+ G R Sbjct: 103 RYDEYSSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVLKHGTR 162 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+++ DV + R Q+ LSRTHP+ + LF +EVPE+ +G V++ +++R+ G R K+A Sbjct: 163 VKAFVTDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGHRTKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKV 299 V ++ ++ GAC+G RG RV A++ EL EKIDI+ +S D A +V NAL P+ V+ Sbjct: 223 VRATIKGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSKYVSST 282 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+D + V+VP QLSLAIGR GQNVRLA++LT W IDI ++ E Sbjct: 283 VIDAEQQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKSDAEQGE 332 >gi|152993777|ref|YP_001359498.1| transcription elongation factor NusA [Sulfurovum sp. NBC37-1] gi|151425638|dbj|BAF73141.1| transcription termination factor NusA [Sulfurovum sp. NBC37-1] Length = 387 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 107/367 (29%), Positives = 197/367 (53%), Gaps = 18/367 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I DA+A+EK+I R+ L +++ A+ L S+ V I+ +T S+ +++ Sbjct: 3 KILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVIT 62 Query: 68 VVEEVEN----------------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 +V + + + L A++ D S++IG +++ D+GR A Sbjct: 63 IVADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTAS 122 Query: 112 QSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDET 170 + + + ++ + ++++KVG ++ GTV R++ N V++G G++ Sbjct: 123 ANLFRELEYHIQRRIEQDLFEKYREKVGTVMLGTVNRIDADDNTHVEIGELKGILTLRNR 182 Query: 171 ISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I E + GD +++ + V + + G + L+RT P+F+ L EVPEI +G+V++ Sbjct: 183 IKGEKFKRGDTIRALLRYVSVDPQYGLFLELTRTSPKFLEALMASEVPEIADGVVEIVNA 242 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +R PG RAK+A+ + ++DP+GA VG++G R+ AV EL E ID + +SP F+ Sbjct: 243 ARIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFITR 302 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 AL PAI + +D+D + V + +Q + AIG+ G N+RLAS LTG+TI++ E + Sbjct: 303 ALSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIELNEVEGVTE 362 Query: 350 NRQKDFN 356 + + Sbjct: 363 RQPESAA 369 >gi|118475774|ref|YP_892520.1| transcription elongation factor NusA [Campylobacter fetus subsp. fetus 82-40] gi|118415000|gb|ABK83420.1| transcription termination factor NusA [Campylobacter fetus subsp. fetus 82-40] Length = 365 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 115/337 (34%), Positives = 189/337 (56%), Gaps = 7/337 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK ++ + V + + AA+ LYG + ++P T I L++ + Sbjct: 3 KISDIIESIANEKGLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKIL 62 Query: 68 VVEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ + + ISLK A + D +++IG ++ L + GR + I ++ Sbjct: 63 VVEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGAGVLSREIEYHIQR 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ++ Y ++ K+ ++ GTV RV+ N V++ V+ I E + G+ VK Sbjct: 123 LIEEKIYEKYNSKINTLVFGTVTRVDAEENTFVEIDEIRAVMSMKNRIKNEKFKVGNVVK 182 Query: 184 SYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I VR +++ G +V LSRT P+F+ L EVPEI +G V ++ +R PG +AK+A+F Sbjct: 183 AVIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVIIQNSARIPGKKAKIALF 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ +ID VGA VG++G R+ AV +EL E ID + +S + A FV AL PAIV+ V +D Sbjct: 243 STTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIFVARALAPAIVSSVKID 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 + + V + EQ S AIG G N+RLAS L+G+ I Sbjct: 303 D--KKAIVSLVPEQKSKAIGVSGINIRLASMLSGFEI 337 >gi|300933074|ref|ZP_07148330.1| transcription elongation factor NusA [Corynebacterium resistens DSM 45100] Length = 331 Score = 320 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 118/349 (33%), Positives = 190/349 (54%), Gaps = 31/349 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ ++ +++ + + ++ + L + V+I+ +G+++++++ Sbjct: 5 MAALRALEAQEGVEFHDLINGIKRGLLESYKELTRYEGWVEVDIDGTSGEVTVYQV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD ++ G D P DFGR + + I +++EA R Sbjct: 61 ----------------ERDEDGEVTGRFDD--TPSDFGRAGAMAVRDAIRYRIKEARVQR 102 Query: 130 QYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y E+ D ++SG V R E G V+V LG DG I E + E L G R Sbjct: 103 DYDEYADLRYRVVSGVVTRNAMANERGVVVVHLGTEAKGKDGEILPAEQLPGEKLEHGMR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+Y+ DV + R Q+++SRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+AV Sbjct: 163 VKAYVTDVIKNSRFVQIIMSRTHPELVRGLFALEVPEVADGSVEIVSVAREAGHRTKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ ++ GAC+G RG RV A+ EL EKIDI+ +S D A +V NAL P+ V +V + Sbjct: 223 RSTIKGLNAKGACIGPRGQRVAAIQRELGGEKIDIIDFSEDPAVYVGNALSPSKVVRVDV 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D D +VP QLSLAIG+ GQN RLA++LTGW IDI E + + Sbjct: 283 TDPDFQVARAVVPDYQLSLAIGKEGQNARLAARLTGWKIDIRPETDAAQ 331 >gi|313681423|ref|YP_004059161.1| nusa antitermination factor [Sulfuricurvum kujiense DSM 16994] gi|313154283|gb|ADR32961.1| NusA antitermination factor [Sulfuricurvum kujiense DSM 16994] Length = 377 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 183/344 (53%), Gaps = 11/344 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I +++A EK ++ D V + S + A+ + +I+ T + L +++ V Sbjct: 4 ILDIIESIANEKGLNPDRVQEAIKTSFIQTAKRIINPTFAFEADIDDRTKQVRLRQIITV 63 Query: 69 VE------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V E E + + A + D +IG + +GR A + + I + Sbjct: 64 VADDAPELEGEEAGAYMGITAALEIDDEAEIGDQLQMEHDIESYGRSAFATLHREIEFHI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + Y ++K K+ +I+SG V RV+ N +++ V+ I E + GD Sbjct: 124 QRLVENELYDKYKSKINQIVSGRVTRVDSDQNTTIEIDEIRAVLPMKSRIKGEKFKVGDV 183 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + V ++ G + LSRT P+F+ +L +EVPEI +GIV ++ +R PG RAK+A Sbjct: 184 VSAIVRRVHVDKSNGISMELSRTAPKFLEELLALEVPEIKDGIVVIEKCARIPGERAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 ++++ IDP+GA VG+RG R+ AV EL E ID V +S F+ A+ PAI++ VV Sbjct: 244 LYTNRPQIDPIGATVGVRGVRINAVSEELCGENIDCVEYSSSPELFISRAMSPAIISAVV 303 Query: 301 LDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + E+ + V +P +Q S AIG+ G N+RLAS LTG+TI++ Sbjct: 304 VTENEGEEKKAVVTLPSDQKSKAIGKSGINIRLASMLTGYTIEL 347 >gi|157165500|ref|YP_001467013.1| transcription elongation factor NusA [Campylobacter concisus 13826] gi|112800050|gb|EAT97394.1| transcription termination factor NusA [Campylobacter concisus 13826] Length = 367 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 186/340 (54%), Gaps = 10/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V + ++ A+ +YG + V I+ ++ L++ + + Sbjct: 4 ISDIIESIANEKNLEIEDVKERVIRALINTAKRVYGENYEYDVSIDANK-NLKLYQKISI 62 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V E+ +SLK A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 63 VANDDERLAEDNEHFLSLKEAKKIDSGVEIGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ ++ + G ++ G V RV+ N +++ ++ R I E + GD V Sbjct: 123 RLVEEKILQKYNEMSGHMVFGPVVRVDNDENTFIEIDELRAILPRKNRIKGEKFKVGDVV 182 Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+ Sbjct: 183 KAVIRKVFTDKNLGIKVELSRTSPKFLEALLTSEVPEIKDGGIIIQGSARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ +IDPVGA VG +G R+ AV EL E ID + ++ + A V A+ PAI+T V + Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHGESIDAIEYTTEPAILVARAMAPAIITSVKI 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +E + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 303 EE--NKAIVTLASEQKSKAIGKNGINIRLASMLTGYEIEL 340 >gi|149194205|ref|ZP_01871303.1| transcription elongation factor NusA [Caminibacter mediatlanticus TB-2] gi|149136158|gb|EDM24636.1| transcription elongation factor NusA [Caminibacter mediatlanticus TB-2] Length = 356 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 180/352 (51%), Gaps = 8/352 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + VA EK +D + V SI K A+ + G DI V++ E + +++ Sbjct: 3 KIQDLLSLVANEKGLDFEEVKEAFKRSIIKTAKKILG---DIDVDVEMEDKKLKIYQNFT 59 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + + + L ARD D + IG + L GR + ++ +++ Sbjct: 60 VVNDDRALNEPEKYLYLDEARDFDENAQIGDKLRAELDLSKLGRSGAMALQREFEREITR 119 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + Y + K+ I+SG V +V+ N V+L GV+ R I E + GD +K Sbjct: 120 LLENEIYRKLISKLNTIVSGEVIKVDNDENTYVELDGVRGVLPRRNRIKGEKFKVGDVLK 179 Query: 184 SYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + V + + G + LSRT P+F+ KL VPE+ +G++++ +R PG R+K+AV Sbjct: 180 ALLKYVHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVAVS 239 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + IDP+G +G G R+ A+ EL E ID++ +SP FV AL PAIV V +D Sbjct: 240 SLNPKIDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVKID 299 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 E G V V + + AIG+ G N+ LAS LT + I++ ++E+ + + + Sbjct: 300 EKNGIAYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKSQEKSTDTSKLE 351 >gi|289809601|ref|ZP_06540230.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 258 Score = 319 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 101/275 (36%), Positives = 157/275 (57%), Gaps = 18/275 (6%) Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V Sbjct: 1 MKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 60 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + + Sbjct: 61 VDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIE 120 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 121 IFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATL 180 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 181 AQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE------ 234 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 235 -----------GLTDEKAGELIMAAR-NICWFGDE 257 >gi|319441434|ref|ZP_07990590.1| transcription elongation factor NusA [Corynebacterium variabile DSM 44702] Length = 344 Score = 319 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 185/350 (52%), Gaps = 31/350 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ + + + ++ ++ ++ + R L RVEI+ G + + R Sbjct: 5 LSALKALEDMEHVQEESLIRAISFALLDSYRELTKVEDRARVEIDRVDGTVRVLRS---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 + D ++ G D P DFGR A ++ + I +V A + Sbjct: 61 ----------------EIDDDGNVTGEFDD--TPTDFGRDAARAVRDAIRGQVNAARAET 102 Query: 130 QYLEFKDKVGEIISGTVKR----VEYGNVIVDLGNS----DGVIRRDETISRENLRPGDR 181 Y ++ G ++SG V R E G +V LG DG+I E I E L GDR Sbjct: 103 SYGKYSALEGTVVSGVVSRDARANERGLTVVHLGTEADGHDGMILTAEHIPGEKLEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ V R QRG Q+LLSRTHP+ + LF +EVPE+ + V++ ++R+ G R+K+AV Sbjct: 163 VKCYVTAVHRGQRGIQILLSRTHPELVRGLFALEVPEVADEAVEIAGIAREAGHRSKVAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + ++ GAC+G RG RV +++ L EKIDIV +S D A +V NAL PA V +V + Sbjct: 223 RSTVNGLNAKGACIGPRGQRVTSIMDALGGEKIDIVDYSEDPAVYVGNALAPAKVVRVDV 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 D D+ +VP QLSLAIGR GQN RLA++LTGW IDI E + + Sbjct: 283 TDHDMQVARAVVPDHQLSLAIGREGQNARLAARLTGWKIDIRPESDPAET 332 >gi|34558085|ref|NP_907900.1| transcription elongation factor NusA [Wolinella succinogenes DSM 1740] gi|34483803|emb|CAE10800.1| TRANSCRIPTION ELONGATION FACTOR [Wolinella succinogenes] Length = 375 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +AYEK + D V + ++I A+ VEI+ + + L++ + Sbjct: 3 KILDIIELIAYEKGLKIDSVAGAVKEAIIITAKKSLDEHIAYDVEIDKKNKTLKLYQKIL 62 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + + IS+ A++ D +++G + L + R AV + + + + Sbjct: 63 VCPPGDERLSSDPDNHISITEAKEMDEEVEVGDELRYELSLENMSRSAVNTLYKELEFHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + + ++K +VG+I+SG+V RV+ GN V++ + + I E+ + G+ Sbjct: 123 QRLIETQLFEKYKSQVGKIVSGSVVRVDDEGNTFVEIDEIRAFLPKKNRIKGESFKVGNV 182 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + V +++ G Q+ LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+A Sbjct: 183 VGAILKHVSIDRKNGIQIELSRTTPKLLEELLRLEVPEIKDGDVTIEKCARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + SS ID VGA VG++G R+ AV EL++E ID + +SP FV +L PA+++ V Sbjct: 243 ISSSSPKIDAVGATVGVKGVRINAVGKELKNENIDCIEYSPIPEMFVARSLSPALISSVK 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 +D + V +P EQ AIG+ G N+RLAS LTG+ I++I Sbjct: 303 IDGT--KAIVTLPSEQKPKAIGKNGINIRLASMLTGYEIELI 342 >gi|307720459|ref|YP_003891599.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294] gi|306978552|gb|ADN08587.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294] Length = 378 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 110/374 (29%), Positives = 193/374 (51%), Gaps = 16/374 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L IA+A+ +EK + + V+ + + + A+ + G +I+ +T +I + + + Sbjct: 3 KILDIAEAIGHEKGLQPEKVMEALKTAFVQTAKRVIGQNFAFEAQIDEDTKNIKIVQTIT 62 Query: 68 VVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 VV + ++ Q ISL AR+ D +++G + D+GR A + I Sbjct: 63 VVAD-DDEKLQDEEVAPAYISLTEAREYDDQVELGDQLQIDHDLEDYGRTAASQLHREIE 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRP 178 ++ D Y ++K KVG ++SG V RV+ N +++ V+ I E Sbjct: 122 YHIQRLVEDEIYNKYKSKVGTLVSGRVTRVDAQNNTYIEVDEIRAVLPMKSRIKGEIFDV 181 Query: 179 GDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD +K+ + V ++ G Q+ LSRT P+F+ L +EVPEI G V ++ +R PG RA Sbjct: 182 GDHIKAVVRRVNMDKENGMQIELSRTSPKFLEALLELEVPEIAEGSVIIEKAARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+A+ S+ +D VGA VG++G R+ AV EL E ID + ++ FV + PAI++ Sbjct: 242 KIALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFVSRTMSPAIIS 301 Query: 298 KVVL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V + + + + + +P +Q S AIG+ G N+RLAS LTG I+++ E + + Sbjct: 302 HVEIVKNEEGENEKAIITLPADQKSKAIGKSGINIRLASMLTGMQIELL-ENDAVTTNED 360 Query: 354 DFNERTQFFMQAIN 367 E + + A+ Sbjct: 361 GTVEEKKENVDALE 374 >gi|47093946|ref|ZP_00231683.1| N utilization substance protein A [Listeria monocytogenes str. 4b H7858] gi|47017684|gb|EAL08480.1| N utilization substance protein A [Listeria monocytogenes str. 4b H7858] Length = 248 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 155/245 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVG 252 +DPVG Sbjct: 244 VDPVG 248 >gi|224417809|ref|ZP_03655815.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|253827150|ref|ZP_04870035.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|313141351|ref|ZP_07803544.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] gi|253510556|gb|EES89215.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|313130382|gb|EFR47999.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] Length = 370 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 188/341 (55%), Gaps = 8/341 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + ++YEK + + V+ V+ +S+ K A+ + EI+ + + L++++ Sbjct: 3 KILDIIEGISYEKGLPIESVMEVVKESVIKVAQQTLDSKILYDAEIDKKNKTLHLYQVIS 62 Query: 68 VVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + E+ I L AR D I +G + L + R AV + + + +++ Sbjct: 63 VCSDDYEAKEDKEHFIPLSEARKHDSEIKVGDELRYELSLENMNRSAVNTLFRELEFRIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K ++G+I+SG+V R++ GN V++ ++ + I E + G + Sbjct: 123 RLIETQLFDKYKAQIGKIVSGSVVRIDDLGNTFVEIDEIRAILPKKNRIKGEEFKVGQVI 182 Query: 183 KSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V + Q G + LSRT P+ + +L +EVPEI +G V++ A +R PG RAK+A+ Sbjct: 183 GAVLKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVACARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + +DPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV+ Sbjct: 243 KTDSMKVDPVGATVGVKGVRINAVSKELKNESIDCIEFSNQPEIYIARALSPALIVSVVV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 ++ + V + EQ AIG+ G NVRLAS LTG+ I++ Sbjct: 303 ED--KKAVVSISSEQKPKAIGKNGINVRLASMLTGYEIELK 341 >gi|259507495|ref|ZP_05750395.1| N utilization substance protein A [Corynebacterium efficiens YS-314] gi|259164880|gb|EEW49434.1| N utilization substance protein A [Corynebacterium efficiens YS-314] Length = 332 Score = 318 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 124/348 (35%), Positives = 201/348 (57%), Gaps = 35/348 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDISLFRL 65 +Q A+ EK I + ++ +A+++ + + S RV+I+ TG +++ Sbjct: 5 VQALRAIEKEKGIRVEDMIRTIANALLHSYLDNRESDVPESSKARVDIDVSTGAVAV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E ++ S P +FGRV+ ++ + I++++REA Sbjct: 62 --IVTEFDDEGTISS-----------------EYDDTPSNFGRVSARAVRDAIVRRLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLR 177 E +R + + + G ++SG V+ E G V+V LG + DG++ E I E L+ Sbjct: 103 EAERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQLGTETDSQDGILLPAEQIPGEKLK 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVKSY+ V + G Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+ Sbjct: 163 HGDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++ +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V Sbjct: 223 KVAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSDDPATFVGNALAPSKVV 282 Query: 298 KV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V ++D + +V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 SVEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 330 >gi|154175154|ref|YP_001408581.1| transcription elongation factor NusA [Campylobacter curvus 525.92] gi|112803976|gb|EAU01320.1| transcription termination factor NusA [Campylobacter curvus 525.92] Length = 366 Score = 318 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK + D V + ++ A+ +Y + V I+ ++ L++ + + Sbjct: 4 ISDIIESIANEKGLQIDDVKERVIRALINTAKRVYSENYEYDVTIDANK-NLKLYQKILI 62 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V E+ ISLK A+ D +++G ++ L + GR A Q+ + + ++ Sbjct: 63 VANDDERLNEDNEHFISLKEAKKIDSGVEVGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ + ++ + VG+++ G+V RV+ N +++ ++ R I E + GD V Sbjct: 123 RLVEEKIFQKYDEMVGQMVFGSVVRVDNDENTYIEIDELRAILPRKNRIKGEKFKIGDVV 182 Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+ Sbjct: 183 KAVIRKVFTDKNLGIRVELSRTSPKFLEALLKAEVPEIKDGGIIIQNSARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ +IDPVGA VG +G R+ AV EL DE ID + ++ + A F+ A+ PAI++ V + Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHDENIDAIEYASEPAIFISRAMAPAIISSVKI 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 303 D--GNKAIVSLVGEQKSKAIGKNGINIRLASMLTGFEIEL 340 >gi|296117673|ref|ZP_06836257.1| transcription termination factor NusA [Corynebacterium ammoniagenes DSM 20306] gi|295969404|gb|EFG82645.1| transcription termination factor NusA [Corynebacterium ammoniagenes DSM 20306] Length = 340 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 122/358 (34%), Positives = 187/358 (52%), Gaps = 40/358 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARS----LYGTMSDIRVEINPETGDISLFRL 65 + A+ E+ + +L+ +A + A RV+I+ +TG++S+ Sbjct: 5 IDALRAIETERGVPVTDLLTSVASGLLYAYTEYRDGNIEENHKARVDIDADTGEVSV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E + I+ P +FGRVA + + I +++RE Sbjct: 62 --VVTESDEDGEIIT-----------------EFDDTPTNFGRVAAPAVRDAIFKRLREV 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN---------SDGVIRRDETIS 172 E DR Y + + G ++SG V++ G V+V LG DG++ E I Sbjct: 103 EADRAYDSYAELQGTVVSGVVQQDSHANSRGIVVVQLGTEIDIKEGKTQDGILLPAEQIP 162 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L G RV++Y+ V++E QVLLSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 163 GERLTHGTRVRAYVVGVQKEGARVQVLLSRTHPELVRGLFELEVPEVLDGAVEIVAIARE 222 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV V+ L EKIDI+ ++ D +V NAL Sbjct: 223 AGHRSKVAVTGQVKGLNAKGACIGPRGQRVTNVMQSLGGEKIDIIDFNEDPGVYVGNALA 282 Query: 293 PAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 P+ V +V VLD + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 PSKVVRVEVLDPEAQLARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADKVE 340 >gi|154148222|ref|YP_001406096.1| transcription elongation factor NusA [Campylobacter hominis ATCC BAA-381] gi|153804231|gb|ABS51238.1| transcription termination factor NusA [Campylobacter hominis ATCC BAA-381] Length = 366 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 110/363 (30%), Positives = 183/363 (50%), Gaps = 10/363 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK ++ V + + + A+ ++G +I+P + I LF+ + Sbjct: 3 KITDIIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKVS 62 Query: 68 VVE------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV + N I+L A+ DP+I+IG +S + GR A Q + Sbjct: 63 VVANDFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNYH 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ ++ + +K+GE++ G+V V+ V++ + + I E GD Sbjct: 123 IQRLLEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVGD 182 Query: 181 RVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + + I V ++ G ++ LSRT P+F+ L EVPEI +G V +KA +R PG RAK+ Sbjct: 183 IINAVIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAKI 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 A+ + +IDPVGA VG +G R+ AV EL+ E ID++ WS V A+ PAI V Sbjct: 243 ALSAISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANSV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + ED + V + Q S AIG+ G N+RLAS LTG I+++ E ++ + Sbjct: 303 KISED--KAIVYINPAQKSKAIGKSGLNIRLASMLTGLQIELVETGESKKTNEEAMQDLK 360 Query: 360 QFF 362 F Sbjct: 361 NLF 363 >gi|224372321|ref|YP_002606693.1| transcription elongation factor NusA [Nautilia profundicola AmH] gi|223589774|gb|ACM93510.1| transcription termination factor NusA [Nautilia profundicola AmH] Length = 357 Score = 317 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 182/351 (51%), Gaps = 8/351 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L + VA EK +D D V SI K A+ + G DI VE++ E G++ ++++ E Sbjct: 3 KVLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIFE 59 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V + +E L AR+ DP+ IG + L GR + ++ +++ Sbjct: 60 VRNDDVALEEPEKYFYLDEAREFDPNAQIGDKLKVELDLGKLGRSGAMALQREFEREITR 119 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + Y + K+ I+SG V +V+ N V+L GV+ I E GD +K Sbjct: 120 LLENEIYRKLISKLNTIVSGEVVKVDSEENTWVELEGVKGVLPMRNRIKGEKFEVGDVMK 179 Query: 184 SYIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + V RG + LSRT+P+F+ KL VPE+ +GI+++ +R PG R+K+AV Sbjct: 180 ALLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSKVAVS 239 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + ++P+G +G G R+ +V EL E ID++ +SP F+ AL PAIV V +D Sbjct: 240 SLNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKNVQVD 299 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ED V V +Q + AIG+ G N+ LA LT + I++ EE S + K Sbjct: 300 EDKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKIELKDAEEKSKDTSK 350 >gi|319955949|ref|YP_004167212.1| nusa antitermination factor [Nitratifractor salsuginis DSM 16511] gi|319418353|gb|ADV45463.1| NusA antitermination factor [Nitratifractor salsuginis DSM 16511] Length = 375 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 195/371 (52%), Gaps = 10/371 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I +++A+EK++ + L +++ A+ L G + VEI+ +T ++++L Sbjct: 3 KILSIIESMAHEKNLSVESALEAFKEALINTAKRLEGEEGEYEVEIDHDTQSYHIYKVLT 62 Query: 68 VVEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E I++ A+ D I+ G + + ++GR A + Q + + Sbjct: 63 VVNNDDPRAQEEPEKYITVDEAKSYDEEIEPGDKIRSEIHLEEYGRTAAANLFQELEYHI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + ++K KVG II GTV RV+ GN V++G G++ + I E+ + GD Sbjct: 123 QRRIEQDLFDKYKAKVGSIIIGTVSRVDDAGNTYVEIGELKGILSQRNRIKGESFKTGDT 182 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V + + G + L+RT P+F+ +L EVPEI +G V++ + +R PG RAK+A Sbjct: 183 LKALLRFVSIDPKYGMHLELTRTAPKFLEELMKREVPEIQDGAVEIISSARIPGERAKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + S IDP+GA VG RG R+ AV EL E ID + +SP +V AL PAIV V Sbjct: 243 LKSDRPDIDPIGAAVGQRGVRINAVSEELCGENIDCIEYSPIPEIYVTRALSPAIVQNVR 302 Query: 301 LDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ++ + + V + +Q + AIG+ G N+RLAS LT + I++ E E Sbjct: 303 IENNNTAEQKAIVDITSDQKAKAIGKSGINIRLASMLTKYQIELNEVEGIVERAPSGTEE 362 Query: 358 RTQFFMQAINV 368 +T+ N+ Sbjct: 363 KTKDLSALENL 373 >gi|15605801|ref|NP_213178.1| transcription elongation factor NusA [Aquifex aeolicus VF5] gi|2982967|gb|AAC06581.1| transcription termination NusA [Aquifex aeolicus VF5] Length = 337 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 129/348 (37%), Positives = 201/348 (57%), Gaps = 25/348 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + +L ++ + VA E + VV + ++I A R ++ VE + G I ++ + Sbjct: 3 KAQLQKLIEQVATEHDLPERVVERALKNAIITAIRKEKKIRDELEVEF-TDEG-IKVYVV 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 R + + P D R+A +AK+ +++ A Sbjct: 61 R------------------RKGNKKFKFP----LDISPEDLNRLAAYAAKEEFYKELERA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++R YLEFK+ GEI+ G V++V E G+VIVDLG D ++ + E + +N + GD+VK+ Sbjct: 99 EQERGYLEFKELEGEIVYGIVRKVLENGDVIVDLGRIDAILPKREQLPTDNFKTGDKVKA 158 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VR+ + P ++LSRTHP F+ KL EVPEI G+V++KAV+R PG RAK+AV + Sbjct: 159 LLLEVRKRRGEPVLILSRTHPNFLRKLLEQEVPEIKEGLVEIKAVARIPGERAKVAVEAK 218 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVG VG++G R+Q V EL EKID++ WS D A + AL PA K+ L Sbjct: 219 EMKMDPVGIVVGLKGMRIQKVSEELGGEKIDVIRWSDDIAELIKRALAPAHPEKIKLFPY 278 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 R EV VP+E+LSLAIG++G NV+LAS+LTGW ID+++ ++ + Sbjct: 279 EKRAEVAVPEEELSLAIGKKGINVKLASKLTGWHIDVLSTKDFEKLEE 326 >gi|26553563|ref|NP_757497.1| transcription elongation factor NusA [Mycoplasma penetrans HF-2] gi|26453569|dbj|BAC43901.1| N-utilization substance protein A [Mycoplasma penetrans HF-2] Length = 597 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 108/362 (29%), Positives = 195/362 (53%), Gaps = 11/362 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D +A EK ++ +++++ +++K+ DI V ++ I LF V Sbjct: 6 FLENLDKIAKEKDTSKENIVNILKTALEKSYLKE-NPDLDIEVVVDLNKESIKLFEKRVV 64 Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ E+ +I++ A++ S +G VS + F R Q++ + + Sbjct: 65 VDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLNDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + Y E+KDKVG II V++V+ V V+LG++ GV+ R E I E L+PG Sbjct: 125 SNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLGSTKGVVLRSEQIPGEELQPGQSYLFL 184 Query: 186 IYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V+ ++ +G ++LSR + L E+ EI +GI+++K +SR G + K+A+ S Sbjct: 185 IKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAILSR 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +D VG VG +G R++ + + L +E+ID++++ D F++NA P + V + +D Sbjct: 245 VPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEITDD 304 Query: 305 V-----GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + ++ P+E L IG+ G NVRL S+LTGW+IDII+E+ +I + +F + + Sbjct: 305 EDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIISEK-LAIEDKIEFEDVS 363 Query: 360 QF 361 Q Sbjct: 364 QL 365 >gi|163782301|ref|ZP_02177299.1| transcription elongation factor NusA [Hydrogenivirga sp. 128-5-R1-1] gi|159882334|gb|EDP75840.1| transcription elongation factor NusA [Hydrogenivirga sp. 128-5-R1-1] Length = 333 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 120/342 (35%), Positives = 198/342 (57%), Gaps = 25/342 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + ++ + VA EK + VV + ++I A + ++ +E + G I ++ + Sbjct: 5 IRKLIEQVAKEKDLPERVVEYALKNAIAIAIKKDKRIRENLDIEF-TDEG-IKVYVVK-- 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + + D R+A +AK+ + ++ AER+ Sbjct: 61 --------------------GKGREKERLPLDISTEDVNRIAAFAAKEEFLNELERAERE 100 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R +LE+K+ GE+++G V+++ + G+++VDLG + V+ R E I E GD+VK+ + Sbjct: 101 RGFLEYKELEGEVVTGIVRKIYDNGDILVDLGKVEAVLPRREQIPGETYHVGDKVKALLL 160 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ P+++LSRTHP F+ +L E+PE+ + ++VK+V+R PG RAK+AV++ D Sbjct: 161 EVKKMHGEPRLILSRTHPLFLKRLLETEIPEVADKEIEVKSVARIPGERAKVAVYAKDMK 220 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG VG+RGSR+Q + EL EKID+V W+ D F+ AL PA T + L + R Sbjct: 221 MDPVGIVVGLRGSRIQPISDELHGEKIDVVRWTDDEEEFIRRALSPAQPTAIRLIPEEER 280 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 EV VP++QLSLAIGRRG NV+LA +LTGW ID+++EE+ Sbjct: 281 AEVAVPQDQLSLAIGRRGTNVKLAHRLTGWHIDVMSEEDFEK 322 >gi|332203719|gb|EGJ17786.1| transcription termination factor NusA [Streptococcus pneumoniae GA47368] Length = 302 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 18/305 (5%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 +K A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ E Sbjct: 1 MKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHEQE 60 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLL 200 I+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V + Sbjct: 61 IMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNVFV 120 Query: 201 SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGS 260 SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG G+ Sbjct: 121 SRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGA 180 Query: 261 RVQAVVTELR--------------DEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV- 305 ++ + ++ +E ID++ W D A F+ NA+ PA V +V+ DE+ Sbjct: 181 NIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDENDS 240 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + + ++ Sbjct: 241 KRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAM---EDAASVELEVEN 297 Query: 366 INVDE 370 V+E Sbjct: 298 DTVEE 302 >gi|157736507|ref|YP_001489190.1| transcription elongation factor NusA [Arcobacter butzleri RM4018] gi|315635666|ref|ZP_07890929.1| transcription termination factor NusA [Arcobacter butzleri JV22] gi|157698361|gb|ABV66521.1| transcription termination factor NusA [Arcobacter butzleri RM4018] gi|315479963|gb|EFU70633.1| transcription termination factor NusA [Arcobacter butzleri JV22] Length = 391 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 112/375 (29%), Positives = 198/375 (52%), Gaps = 22/375 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I D++AYEK + D V + + +++ K A+ + T I+ + LF+ +E Sbjct: 3 KIIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIE 62 Query: 68 VVEEVEN---------------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 VV + ++ ISL+ A++ + +DIG +S L + GR A Sbjct: 63 VVSKDDDRLKEGSLTKEGTPINPENYISLEEAKEINSDLDIGDFMSYELEFENMGRNAAT 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETI 171 +++ + ++K+KVG+ +SGTV R++ N +++G G+++R I Sbjct: 123 ILLSNFEFRLQRFVEENIVGKYKEKVGKTVSGTVTRIDKSDNTYIEIGEIKGILQRKSRI 182 Query: 172 SRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 E + GD VK+ + V + G V +SRT P+F+ L +EVPE+ + + ++A + Sbjct: 183 KGEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKIAIEASA 242 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R PG+R+K+A+ + D+ IDP+GA VG++G R+ +V +L E ID V +S F+ A Sbjct: 243 RIPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPEIFISRA 302 Query: 291 LRPAIVTKVVL-----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 L PAIV V + + + G+ V +P +Q S AIG+ G N+RLAS LT + I++I Sbjct: 303 LSPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDIELIEIG 362 Query: 346 EDSINRQKDFNERTQ 360 + + N + Sbjct: 363 SKTPTLNNETNVQVD 377 >gi|50365108|ref|YP_053533.1| transcription elongation factor NusA [Mesoplasma florum L1] gi|50363664|gb|AAT75649.1| transcription terminator [Mesoplasma florum L1] Length = 471 Score = 313 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 8/347 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ ++ EKSI ++V + + + QKA + T + ++ EIN +TG I+LF+ Sbjct: 3 NGAQILEALASLESEKSISKEVAIEGIKEGFQKAYERFFDTEAVVKTEINEQTGSINLFQ 62 Query: 65 LLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQ 120 L VV +E+E+ +I L+ A + +G V P+ +F RVAV +Q+ Q Sbjct: 63 ELMVVATDDEIEDDWLEIVLEDALKINKEAKVGDKVYKPIDFDEEFSRVAVGQVRQIFQQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLRP 178 K+R ER Y +F GEI+ G + + + I+D+ + +TI+RE Sbjct: 123 KIRATERAMIYEKFIQLEGEIVRGKIVGMNDQGTSYILDIDGVHTSLWNQKTINREEFVV 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 + V + +V RE + Q+++SR P+F+ KL EV E+ G+V+V +VSR+PG RAK Sbjct: 183 NELVDVLLEEVARENKYSQLVVSRVAPKFLAKLVEKEVSEVAQGLVEVMSVSREPGKRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D ++P+GA VG++GSR+ + ELR EKID+V W + F+INA+ P V Sbjct: 243 IAVLSHDEDVEPIGAIVGVKGSRINNISKELRGEKIDVVKWDDEIIPFIINAMAPVKVIS 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V +E G +++VP +QLSLAIG+ G +L + L I+I + E Sbjct: 303 V--NEVEGEFDIVVPNQQLSLAIGKGGMAAKLVANLLKRRINIYSLE 347 >gi|194246707|ref|YP_002004346.1| transcription elongation factor NusA [Candidatus Phytoplasma mali] gi|193807064|emb|CAP18500.1| Transcription termination factor [Candidatus Phytoplasma mali] Length = 358 Score = 313 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 97/357 (27%), Positives = 193/357 (54%), Gaps = 9/357 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + I A E + ++ + ++ R + S +V+I + +I+L++ Sbjct: 2 NSKDFFNIISEFAEENELTKEQIKDAFTKALIYGCRKAHKIKS-CKVDIKEDRNEINLYK 60 Query: 65 LLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +++ E Y I L+ A+ + +G +++ P DF AV+ K Sbjct: 61 QYYIIDPEEQYLNNYKDYTHIDLEEAKKIKKRVKVGQIINIKTNPKDFNLYAVKDFKNKF 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-VIRRDETISRENLR 177 +++ + +R+ Y FK G++I+ V ++L ++ + ET+++E Sbjct: 121 KEELTKQKRENIYDYFKSYEGKLINAKVIGSNSKFYYLELEKEMTTLLPKKETLNKEIFA 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ YI +V++ + P++ +S+TH + K+F +PEI +G +++ ++R PG R Sbjct: 181 EGDRIRVYIVEVQKTTKLPRIFVSQTHIGLVTKIFEDWIPEINDGTLKIMMIARIPGERT 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+ +FS++ +DP+G+C+G G+R+++++ L+ EKID+ +WS + + N+L+PA + Sbjct: 241 KIGLFSNNPQVDPIGSCIGKNGNRIKSIIKLLQGEKIDLFLWSEKNEELISNSLQPAKIF 300 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +V + + + + VIV +QLSLAIG+ G+NV+LA+Q T W IDI T + + Sbjct: 301 QVNIKNLENKKALVIVEDDQLSLAIGKLGKNVKLAAQATKWNIDIKTLSQLKKIKTM 357 >gi|78189424|ref|YP_379762.1| transcription elongation factor NusA [Chlorobium chlorochromatii CaD3] gi|78171623|gb|ABB28719.1| NusA antitermination factor [Chlorobium chlorochromatii CaD3] Length = 527 Score = 313 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 125/395 (31%), Positives = 212/395 (53%), Gaps = 29/395 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VE+V+ T +ISL+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILRKIVEDVDIPTIEISLEDIRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+G Sbjct: 104 IDDSLEVGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLIVYEECLEKVGEVIAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR----- 194 V +V VI + V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRMPRMKLYVKRIEREKNKIRMD 223 Query: 195 ------------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +KAV+R PG RAK+AV Sbjct: 224 DGTVVEREKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIIIKAVARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + V Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPMTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + Sbjct: 344 VDIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKTTEDPTDIDIIE 403 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 F + + + L+ G +++ + EI Sbjct: 404 F---REEFGDDMIYQLLDAGLDTAKKVLRAGLEEI 435 >gi|78777942|ref|YP_394257.1| transcription elongation factor NusA [Sulfurimonas denitrificans DSM 1251] gi|78498482|gb|ABB45022.1| NusA antitermination factor [Sulfurimonas denitrificans DSM 1251] Length = 380 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 194/377 (51%), Gaps = 22/377 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I +A+A EK + D V + + + A+ + + IN +T I + + + Sbjct: 3 KILDIVEAIANEKGLKSDKVKEALKAAFIQTAKRIINSKFAFEAVINTQTKTIDIIQTIT 62 Query: 68 VVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VV + E IS+ AR+ D +++ + P ++GR A + I Sbjct: 63 VVSDSDERLKDEEIAPAYISITEAREYDDQVELDDQLQIPHDLEEYGRTAASQLHREIEY 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPG 179 ++ D + ++K K+G +++G V RV+ N +++ V+ I E + G Sbjct: 123 HIQRVVEDEIFNKYKSKIGSLVNGRVTRVDNQNSTYIEIDEIRAVLPIKNRIKGEIFKVG 182 Query: 180 DRVKSYIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 D +K+ + V ++ G Q+ LSRT P+F+ +L +EVPEI +G V V+ +R PG RAK Sbjct: 183 DHLKAVVRRVDMNKENGIQIELSRTSPKFLEELLALEVPEISDGTVIVERSARIPGERAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +A+FS+ +D VGA VG++G R+ AV EL E ID + ++ F+ + PAI++ Sbjct: 243 VALFSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFISRIMSPAIISN 302 Query: 299 VVL--DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI---------ITEE 345 V + DE+ + + +P +Q S AIG+ G N+RLAS L+G I++ +++ Sbjct: 303 VEILKDENGEAQKAIITLPTDQKSKAIGKNGINIRLASMLSGLNIELVESDVKVAQMSDM 362 Query: 346 EDSINRQKDFNERTQFF 362 +D+ +++ + F Sbjct: 363 QDNKEQKEGVDALKALF 379 >gi|86151767|ref|ZP_01069981.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124006|ref|YP_004066010.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841396|gb|EAQ58644.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017728|gb|ADT65821.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 362 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 191/340 (56%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 238 QANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|86149201|ref|ZP_01067433.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596851|ref|ZP_01100087.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 84-25] gi|121612185|ref|YP_001000167.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005125|ref|ZP_02270883.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|218562115|ref|YP_002343894.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840559|gb|EAQ57816.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni CF93-6] gi|87250165|gb|EAQ73123.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|88190540|gb|EAQ94513.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359821|emb|CAL34608.1| transcription termination factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925727|gb|ADC28079.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni IA3902] gi|315928212|gb|EFV07529.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930003|gb|EFV09146.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 305] Length = 362 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 191/340 (56%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 238 QANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|57237514|ref|YP_178528.1| transcription elongation factor NusA [Campylobacter jejuni RM1221] gi|205355336|ref|ZP_03222107.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8421] gi|283955882|ref|ZP_06373372.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 1336] gi|57166318|gb|AAW35097.1| transcription termination factor NusA [Campylobacter jejuni RM1221] gi|205346570|gb|EDZ33202.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8421] gi|283792542|gb|EFC31321.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 1336] gi|315057880|gb|ADT72209.1| Transcription termination protein NusA [Campylobacter jejuni subsp. jejuni S3] Length = 362 Score = 312 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 191/340 (56%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 238 QANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|257459336|ref|ZP_05624449.1| transcription termination factor NusA [Campylobacter gracilis RM3268] gi|257443265|gb|EEV18395.1| transcription termination factor NusA [Campylobacter gracilis RM3268] Length = 375 Score = 312 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 104/373 (27%), Positives = 188/373 (50%), Gaps = 17/373 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK ++ V + + + A+ L+G E++P+T + L++ + Sbjct: 3 KITDIIESIANEKGLEPADVKERVKTAFIQTAKRLFGEEYLYDSEVDPQTKRVKLYQKVH 62 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + + I+L A+ + +IG +S + + GR A + + ++ Sbjct: 63 VVADDDERLGDHNFIALSEAKKIGENAEIGDELSYEINIENLGRTASGVLARELNFHIQR 122 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ++ + +K KVG + GTV ++++ G V++ ++ + I EN + GD ++ Sbjct: 123 LLEEKIFENYKSKVGTLTHGTVTKIDHDGTTYVEIEDTKAFMPLKNRIKGENFKVGDVLQ 182 Query: 184 SYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I +V ++ G ++ LSRT P+F+ L EVPEI +G V ++A +R PG RAK+A+ Sbjct: 183 AVIKNVAIDKSHGIRLELSRTSPKFLEALLAAEVPEIKDGSVIIQACARIPGRRAKIALS 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTEL--------RDEKIDIVVWSPDSATFVINALRPA 294 ++DPVGA VG G+R+ AV L E ID +S + A+ PA Sbjct: 243 VVSPNVDPVGATVGKGGARIDAVSKFLSKNLQDGSGGESIDAFEYSASPEILITRAMAPA 302 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII---TEEEDSINR 351 IV V + G+ V V +Q S AIG+ G N+RLAS L G I++I + E +++ Sbjct: 303 IVNSVKIT-QDGKAIVYVNPDQKSKAIGKNGLNIRLASMLCGCEIELIETGSASEKKVSK 361 Query: 352 QKDFNERTQFFMQ 364 ++ F + Sbjct: 362 EEGLKNLEALFGE 374 >gi|153951003|ref|YP_001398503.1| transcription elongation factor NusA [Campylobacter jejuni subsp. doylei 269.97] gi|152938449|gb|ABS43190.1| transcription termination factor NusA [Campylobacter jejuni subsp. doylei 269.97] Length = 362 Score = 312 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 191/340 (56%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVADNDERLQNKSESFIALSKAKVEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 238 QANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVNLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|38234060|ref|NP_939827.1| transcription elongation factor NusA [Corynebacterium diphtheriae NCTC 13129] gi|38200322|emb|CAE50007.1| Putative N utilization related protein [Corynebacterium diphtheriae] Length = 332 Score = 311 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 123/349 (35%), Positives = 193/349 (55%), Gaps = 35/349 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLFRL 65 +Q A+ +++I D +L +A ++ A + S RV+IN TG +S+ Sbjct: 5 VQALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVSV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E+ D + D P +FGRV Q+ + I++++REA Sbjct: 62 --IVSEL---------------DEDGVVTTEYDD--TPENFGRVGAQAVRDAIVRRLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLR 177 E + Y + + G ++SG V+ E G V++ LG DG++ E I E+ + Sbjct: 103 ETLKAYDAYSEYEGRVVSGIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFK 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVK+Y+ + R R Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+ Sbjct: 163 HGDRVKAYVVGINRTPRDLQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++ ++ GAC+G RG RV ++ EL EKIDI+ + D A FV NAL P+ V Sbjct: 223 KVAVKATVKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVV 282 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + D + +V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 HVEITDAEAQTAQVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331 >gi|269123542|ref|YP_003306119.1| NusA antitermination factor [Streptobacillus moniliformis DSM 12112] gi|268314868|gb|ACZ01242.1| NusA antitermination factor [Streptobacillus moniliformis DSM 12112] Length = 362 Score = 311 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 111/347 (31%), Positives = 193/347 (55%), Gaps = 6/347 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ++ L + + EK I + +L + + A + + ++ +EI+ TGD+ Sbjct: 1 MKSKDKATFLDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDV 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 +F ++++ V N T +I A++ I +G + L +F R A+Q AK + Sbjct: 61 KMFCEKLIIDDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSI 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENL 176 IIQ +RE E++ + +I++ V+R+E G++ V + D +I + E S + + Sbjct: 121 IIQYIREQEKELICKQLTAIEHQIVNVIVRRIEENGSLYVGMNGLDLIIPQRELSSLDKV 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + GDR+ +YI V R P+V ++R + + KLF EVPEI +GI+ +K ++R+ G + Sbjct: 181 QVGDRLVAYIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVK 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+A++S D +ID G+C+G G R+ ++ EL EKI++V W+ D FV NAL PA + Sbjct: 241 AKVAIYSEDPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEI 300 Query: 297 TKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + +ED +V V QL+LAIG++G N +LA +L ++I Sbjct: 301 FSVEIVRNEDEIVAKVEVDPSQLTLAIGKKGVNSKLAGKLCKLRVNI 347 >gi|57168596|ref|ZP_00367729.1| transcription termination factor NusA [Campylobacter coli RM2228] gi|305433015|ref|ZP_07402171.1| transcription termination factor NusA [Campylobacter coli JV20] gi|57020101|gb|EAL56778.1| transcription termination factor NusA [Campylobacter coli RM2228] gi|304443716|gb|EFM36373.1| transcription termination factor NusA [Campylobacter coli JV20] Length = 362 Score = 311 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 104/339 (30%), Positives = 183/339 (53%), Gaps = 13/339 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK++D + V + ++ A+ +YG D V + + ++L++ + V Sbjct: 4 IADIIESIANEKNLDIESVKEKVIIALINTAKRIYGQEYDFFV--DRKN--LNLYQKITV 59 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + EN I A+ P ++IG ++ + GR AV + + ++ Sbjct: 60 VADNDERLNENKESYIEFSKAKKEAPDVEIGDELTYECSLENLGRTAVNILHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ G V R++ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGNVVRIDNEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V + +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ + Sbjct: 180 KAVIRRVYTD-KGIKMELSRTSPKFLECLLEAEVPEIKDGYVSVVKCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + +S + + AL PAIV+ V ++ Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFSNEPEILIARALAPAIVSSVKIE 298 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + EQ S AIG+ G N+RLA L+G+ I++ Sbjct: 299 --NEKAIVTLNSEQKSKAIGKSGINIRLAGMLSGYEIEL 335 >gi|86153795|ref|ZP_01071998.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842756|gb|EAQ59968.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 362 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 191/340 (56%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL P+IV V + Sbjct: 238 QANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPSIVNSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|296274352|ref|YP_003656983.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM 7299] gi|296098526|gb|ADG94476.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM 7299] Length = 391 Score = 310 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 186/356 (52%), Gaps = 22/356 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ I D++AYEK I + V + + +++ K + EI+ + + LF+ +E Sbjct: 3 KIIDILDSIAYEKGIKSEHVETALKEALIKTGEKMVDHTLIFDAEIDRKNKRLKLFQKIE 62 Query: 68 VV---------EEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 V+ EEV+ N I+L A++ D +DIG + L + GR A Sbjct: 63 VIKDDDKRLQGEEVDQYNNIINPENFIALSEAKEIDADLDIGDFLDYDLEFENMGRNAAT 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETI 171 +++ + ++K K+G+II+G+V RV+ N V++G G++ R I Sbjct: 123 ILHNNFEYRLQRYIEENLVSKYKSKIGKIINGSVTRVDRAENTFVEIGEVKGMLTRKSRI 182 Query: 172 SRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 E + GD +K+ + V + G + LSRT P+F+ L +EVPE+ + + ++A + Sbjct: 183 KGETFKVGDNLKAVVKAVTIDKTNGLIIELSRTSPKFLEALLALEVPELKDERITIEASA 242 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R PGSRAK+A+ + D IDP+G+ VG++G R+ AV +L E ID V +S FV A Sbjct: 243 RIPGSRAKIALSTMDPQIDPIGSVVGVKGVRITAVSQQLHGENIDCVEYSTIPEMFVARA 302 Query: 291 LRPAIVTKVVLDEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L PAI+ V + + + V + +Q S AIG+ G N+RLAS LT I++ Sbjct: 303 LSPAIIKSVQIIKSEKYDEKDKAIVTILSDQKSKAIGKSGLNIRLASMLTKCEIEL 358 >gi|194333210|ref|YP_002015070.1| transcription elongation factor NusA [Prosthecochloris aestuarii DSM 271] gi|194311028|gb|ACF45423.1| NusA antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 517 Score = 310 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 124/397 (31%), Positives = 210/397 (52%), Gaps = 29/397 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++V+E++ + +IS+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVDEIDIPSIEISIDEVRQ 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+I+G Sbjct: 104 IDDSLEVGDYYEEGPINLEEYLTRKSIQIIKQSVQKKVRDLERQVVYEECLEKVGEVIAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V ++ VI + V+ + E I ++N R R+K Y+ + RE+ Sbjct: 164 EVYQIRPHEVIFSYNTSKDHRVELVLPKSEMIKKDNPRRTPRMKLYVKRIERERVKVKQD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SRT +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGSIVEKEKPDGGMKVIVSRTDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + V Sbjct: 284 STSSRIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIFIARALQPAKIDPMTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + + Sbjct: 344 ADMKTRMARVMLKPDQIKYAIGKNGNNIHLAERLTGYEIDVYRDVIDKTLEDPNDIDIIE 403 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 F + + + L+ G +++ I EI Sbjct: 404 F---REEFGDDMIYQLLDSGLDTAKKVLQAGIEEIEQ 437 >gi|189499377|ref|YP_001958847.1| transcription elongation factor NusA [Chlorobium phaeobacteroides BS1] gi|189494818|gb|ACE03366.1| NusA antitermination factor [Chlorobium phaeobacteroides BS1] Length = 521 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 121/397 (30%), Positives = 211/397 (53%), Gaps = 29/397 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L VV+EV+ + +I L+ Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKTVVDEVDLPSIEIGLEEVSR 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + + P+ D+ R ++Q KQ + +KVR+ E+ Y + +KVGE+++G Sbjct: 104 IDESLELGDMYEEGPVNLEDYLTRKSIQIIKQSVQKKVRDMEKQVVYEDCLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRQNEVIFSYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRQD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGSIVEKEKPDGGMKVIVSRIDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ D ++ AL+PA + V Sbjct: 284 STSSRIDPVGASVGYRGKRIQSIVKELNNENIDVINFTDDPQIYIARALQPAKIDPMTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ EQ+ AIG+ G N+ LA +LTG+ +D+ + D + + + Sbjct: 344 ADMKTHKARVMLKPEQIKYAIGKNGNNIHLAERLTGYDVDVYRDVIDKSMEDPNDIDIIE 403 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 F + + + L+ G +++ +I +I + Sbjct: 404 F---REEFGDDMIYQLLDSGLDTAKKVLKAEIEDIEA 437 >gi|157414753|ref|YP_001482009.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81116] gi|157385717|gb|ABV52032.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 81116] gi|307747392|gb|ADN90662.1| Transcription termination factor NusA [Campylobacter jejuni subsp. jejuni M1] gi|315931099|gb|EFV10073.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 327] Length = 362 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 190/340 (55%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 AKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 238 QANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|119356207|ref|YP_910851.1| transcription elongation factor NusA [Chlorobium phaeobacteroides DSM 266] gi|119353556|gb|ABL64427.1| NusA antitermination factor [Chlorobium phaeobacteroides DSM 266] Length = 518 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 123/398 (30%), Positives = 208/398 (52%), Gaps = 29/398 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L +VV EV+ + +IS+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKVVSEVDLESIEISIDEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDDSLELGDYYEEGPIKLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ R E I ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPRAEMIKKDNPRRNPRMKLYVKRIEREKVKVRLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGGVVERDKPDGGMKVIVSRIDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + V Sbjct: 284 STSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + Sbjct: 344 ADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKSMEDPTDIDIIE 403 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 F + + + L+ G +++ + I + Sbjct: 404 F---REEFGDDMIYQLLDGGLDTAKKVLKAGVERIEEV 438 >gi|309804431|ref|ZP_07698499.1| transcription termination factor NusA [Lactobacillus iners LactinV 09V1-c] gi|308166244|gb|EFO68459.1| transcription termination factor NusA [Lactobacillus iners LactinV 09V1-c] Length = 248 Score = 309 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 2/230 (0%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +Q++REAER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P Sbjct: 1 MQRLREAERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKP 60 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+K + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K Sbjct: 61 QDRIKVLVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTK 120 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV SSD +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V Sbjct: 121 IAVKSSDPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIA 180 Query: 299 VVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V E VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 181 VQFGEANDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQ 230 >gi|193213433|ref|YP_001999386.1| transcription elongation factor NusA [Chlorobaculum parvum NCIB 8327] gi|193086910|gb|ACF12186.1| NusA antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 521 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 122/397 (30%), Positives = 208/397 (52%), Gaps = 29/397 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ + IQK R Y + + INPE GD ++ L ++VEEV+ T +I L R Sbjct: 44 IADLLKEIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDLPTIEIGLDEVRQ 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ DF R ++Q KQ + +KVR+ ER Y + +KVGE+++G Sbjct: 104 IDDSLELGDYYEEGPIKLDDFLTRKSIQIIKQSVQKKVRDLERMAVYEDCLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R +K Y+ + RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPHMKLYVKRIERERVKVRND 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + V Sbjct: 284 STSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + + Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPNDIDIIE 403 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 F + + + L+ G +++ + +I Sbjct: 404 F---REEFGDDMIYQLLDGGLDTAKKILKGGVEKIEE 437 >gi|110597607|ref|ZP_01385892.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM 13031] gi|110340727|gb|EAT59204.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM 13031] Length = 516 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 124/395 (31%), Positives = 210/395 (53%), Gaps = 29/395 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++V+EV+ + +ISL R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDIESIEISLDEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+DIG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDDSLDIGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V ++ VI + V+ + E + ++N R R+K YI + RE+ Sbjct: 164 EVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYIKRIEREKVKTKLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV Sbjct: 224 DGNVVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + V Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYISRAMQPAKIDPLTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ D I++ + Sbjct: 344 ADPKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYR---DVIDKSMEDPTDID 400 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + + + L+ G +++ + EI Sbjct: 401 IIEFREEFGDDMIYQLLDGGLDTAKKVLKAGVEEI 435 >gi|254457123|ref|ZP_05070551.1| transcription termination factor NusA [Campylobacterales bacterium GD 1] gi|207085915|gb|EDZ63199.1| transcription termination factor NusA [Campylobacterales bacterium GD 1] Length = 377 Score = 306 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 189/375 (50%), Gaps = 21/375 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I DA+A+EK + + VL + + + A+ + I+ T I + + + Sbjct: 3 KILDIVDAIAHEKGLQPEKVLEALKTAFVQTAKRVIDRNFAFEASIDESTKSIEIVQTIT 62 Query: 68 VVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 V+ + ++ Q IS+ AR+ D +++ + P ++GR + I Sbjct: 63 VLAD-DDQRLQDEEVAPAYISITDAREYDDQVELEDQLQVPHDLEEYGRTGASQLHREIE 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRP 178 ++ D + ++K K+G +++G V V+ N +++ ++ I E + Sbjct: 122 YHIQRLVEDELFNKYKSKIGSLVTGRVTSVDSHNATYIEVDEVRAILPMKSRIKGEVFKK 181 Query: 179 GDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GD +K+ + V ++ G Q+ LSRT P+F+ +L +EVPEI +G+V V+ +R PG RA Sbjct: 182 GDHLKAVVRRVNLDKENGIQIELSRTSPKFLEELLALEVPEIADGVVIVERSARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+A+ S+ +D VGA VG++G R+ AV EL E ID V ++ F+ + PAI++ Sbjct: 242 KIALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCVEYTTIPELFISRVMSPAIIS 301 Query: 298 KVVL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID------IITEEED 347 V + D + + + +P +Q S AIG+ G N+RLAS LTG I+ + TE+ + Sbjct: 302 HVEIIRNEDGEAEKAIITLPADQKSKAIGKSGINIRLASMLTGLNIELVENNTVTTEDGE 361 Query: 348 SINRQKDFNERTQFF 362 + + F Sbjct: 362 IEEAKDGVDALEALF 376 >gi|28493123|ref|NP_787284.1| transcription elongation factor NusA [Tropheryma whipplei str. Twist] gi|28572761|ref|NP_789541.1| transcription elongation factor NusA [Tropheryma whipplei TW08/27] gi|28410894|emb|CAD67279.1| N utilization transcriptional termination/antitermination factor [Tropheryma whipplei TW08/27] gi|28476163|gb|AAO44253.1| N utilization substance protein A [Tropheryma whipplei str. Twist] Length = 319 Score = 306 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 120/341 (35%), Positives = 177/341 (51%), Gaps = 33/341 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLFRLLE 67 L + AV E+ + D ++ + ++ A G ++ ++N +TG+I L R+ Sbjct: 7 LSVLRAVEREQRVAFDDLVRIAEQAVVMAYLRHTGLEDADLVKAKLNRKTGEIDL-RVKH 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 G + P F R+A +AK+VI K+R Sbjct: 66 -------------------------DGDFI--PYKSDAFSRMAATAAKRVITSKMRTLSD 98 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185 D + +K K+G ++SG + + N +V L ++ ++R +E I E G VK Y Sbjct: 99 DSTFARYKTKIGTVLSGVISQSTSQNFRMVSLDRRTEAILRPEEQIPGEEYPHGKMVKVY 158 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV RG V +SRTHP + LF EVPEI +G V++ AVSR+ G R K++V S+ Sbjct: 159 VTDVTLGPRGSNVYVSRTHPGLINGLFLQEVPEIASGTVEIVAVSREAGHRTKVSVRSNS 218 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 S VGACVG G RV+AV +E+ +EKIDI+ +S D +V NA+ PA V VLD Sbjct: 219 KSTSAVGACVGEYGCRVRAVTSEICNEKIDIISYSDDLGQYVANAISPATAADVFVLDSR 278 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V V KE+ SLAIG+ GQN RLA++LTG IDI +E Sbjct: 279 QKVVRVYVSKEEYSLAIGKEGQNARLAARLTGAKIDIRIDE 319 >gi|189345843|ref|YP_001942372.1| transcription elongation factor NusA [Chlorobium limicola DSM 245] gi|189339990|gb|ACD89393.1| NusA antitermination factor [Chlorobium limicola DSM 245] Length = 513 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 123/397 (30%), Positives = 209/397 (52%), Gaps = 29/397 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++V+EV+ +ISL R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILRKIVQEVDIPAIEISLDEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+D+G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDESLDLGDFYEEGPIRLEDYLTRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V ++ VI + V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK++V Sbjct: 224 DGGVVEKEKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVSVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + V Sbjct: 284 STSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ D I++ + Sbjct: 344 ADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYR---DVIDKSLEDPTDID 400 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + L+ GF +++ I EI Sbjct: 401 IIEFREEFGDDMLYQLLDAGFDTAKKVLKAGIEEIEQ 437 >gi|283954248|ref|ZP_06371772.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 414] gi|283794266|gb|EFC33011.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 414] Length = 362 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 102/340 (30%), Positives = 189/340 (55%), Gaps = 13/340 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + Sbjct: 3 KIADIIESIASEKNLNLENVRERVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKIT 58 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + + I+L A+ P ++IG ++ + GR AV + + + + Sbjct: 59 IVTDNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ G+V RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFEKYKNKVGQMVFGSVVRVDNEENTYIEIDELRAFLPRKNRIKGEKFKIGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIVGCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ +IDPVGA VG++G R+ AV EL +E ID + + +S + AL PAI+ V + Sbjct: 238 QANGVNIDPVGATVGVKGVRINAVSKELHNENIDCIESTNESEILISRALAPAIINSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ++ + V + EQ S AIG+ G N+RLAS L+G+ I++ Sbjct: 298 ED--KKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIEL 335 >gi|315638400|ref|ZP_07893578.1| transcription termination factor NusA [Campylobacter upsaliensis JV21] gi|315481528|gb|EFU72154.1| transcription termination factor NusA [Campylobacter upsaliensis JV21] Length = 358 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 104/361 (28%), Positives = 195/361 (54%), Gaps = 13/361 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V + ++ A+ +YG + V + +T +SL++ + Sbjct: 3 KIADIIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFV--DKKT--LSLYQKIL 58 Query: 68 VVEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + EN I++ A+ ++IG ++ + GR AV + + + + Sbjct: 59 IVADDDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ G+V RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G+V V +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKMELSRTSPKFLECLLEAEVPEIKDGLVSVVKCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V + Sbjct: 238 QANSSNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 ++ V + EQ S AIG+ G N+RL S L+G+ I++ +I+ ++ Sbjct: 298 ED--KTAIVSLNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDL 355 Query: 362 F 362 F Sbjct: 356 F 356 >gi|21673079|ref|NP_661144.1| transcription elongation factor NusA [Chlorobium tepidum TLS] gi|21646150|gb|AAM71486.1| N utilization substance protein A, putative [Chlorobium tepidum TLS] Length = 521 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 122/397 (30%), Positives = 209/397 (52%), Gaps = 29/397 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ + IQK R Y + + INPE GD ++ L ++V+EV+ T +I L R Sbjct: 44 IADLLKEIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDLPTIEIGLDEVRQ 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++G Sbjct: 104 IDDSLELGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERLAVYEECLEKVGEVVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRPNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRND 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + V Sbjct: 284 STSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + + Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPNDIDIIE 403 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 F + + + L+ G +++ + +I Sbjct: 404 F---REEFGDDMIYQLLDGGLDTAKKILKGGVEKIEE 437 >gi|57242307|ref|ZP_00370246.1| transcription termination factor NusA [Campylobacter upsaliensis RM3195] gi|57016987|gb|EAL53769.1| transcription termination factor NusA [Campylobacter upsaliensis RM3195] Length = 358 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 104/361 (28%), Positives = 194/361 (53%), Gaps = 13/361 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A EK+++ + V + ++ A+ +YG + V + +T +SL++ + Sbjct: 3 KIADIIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFV--DKKT--LSLYQKIL 58 Query: 68 VVEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + EN I++ A+ ++IG ++ + GR AV + + + + Sbjct: 59 IVADDDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ + ++K+KVG+++ G+V RV+ N +++ + R I E + GD Sbjct: 119 QKLLEQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDV 178 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+ I V + +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ + Sbjct: 179 VKAVIRRVYTD-KGIKMELSRTSPKFLECLLEAEVPEIKDGFVSVVKCARIPGERAKIIL 237 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V + Sbjct: 238 QANSSNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKI 297 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 ++ V + EQ S AIG+ G N+RL S L+G+ I++ +I+ ++ Sbjct: 298 ED--KTAIVSLNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDL 355 Query: 362 F 362 F Sbjct: 356 F 356 >gi|78187634|ref|YP_375677.1| transcription elongation factor NusA [Chlorobium luteolum DSM 273] gi|78167536|gb|ABB24634.1| NusA antitermination factor [Chlorobium luteolum DSM 273] Length = 553 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 125/397 (31%), Positives = 208/397 (52%), Gaps = 29/397 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIRR 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+ Sbjct: 104 IDESLEVGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVIAA 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R R+K Y+ ++ RE+ Sbjct: 164 EVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVRLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ +S + ++ AL+PA + V Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ D I+R + Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYR---DVIDRSMEDPTDID 400 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + L+ G ++ + EI Sbjct: 401 IIEFREEFGDDMIYQLLDAGLDTAKKALKAGVEEIEQ 437 >gi|222823361|ref|YP_002574935.1| transcription elongation factor NusA [Campylobacter lari RM2100] gi|222538583|gb|ACM63684.1| transcription elongation factor NusA [Campylobacter lari RM2100] Length = 363 Score = 303 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 199/367 (54%), Gaps = 17/367 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG-DISLFRLL 66 ++ I +++A EK++ + V + ++ A+ +YG + V ++G ++ L++ + Sbjct: 3 KITDIIESIANEKNLQIEDVRERVKKALINTAKKIYGDKYEFFV----DSGKNLQLYQKI 58 Query: 67 EVVEEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VV + ++ + I+L AR ++IG ++ + GR AV + + Sbjct: 59 VVVSD-DDERLESENEHFIALSKARAEAKDVEIGDELTYECSLENLGRTAVNILHKELEY 117 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPG 179 +++ ++ Y +++ VG ++ G+V RV+ N V++ + R I E + G Sbjct: 118 NIQKLLEEKIYEKYQKMVGHMVFGSVVRVDSEENTYVEIDEFRAYLPRKNRIKGEKFKVG 177 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D +K+ I V ++ G ++ LSRT P+F+ L EVPEI +G++ + A +R PG RAK+ Sbjct: 178 DVIKAVIRHVYIDKSGMRMELSRTSPKFLEALLKAEVPEIKDGLINIYASARIPGERAKI 237 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 + ++ S+D VGA VG++G R+ AV EL++E ID + +S + A + +L PAI+ V Sbjct: 238 ILQANSPSVDAVGATVGIKGVRINAVSKELKNENIDCIEYSNEMAILITRSLAPAIINSV 297 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQKDFNE 357 +++ + V + EQ S AIG+ G N+RLAS L G+ I++ I E+ + N+++ F Sbjct: 298 SIED--KKAIVTLNSEQKSKAIGKSGINIRLASMLLGYEIELNEINNEDKTNNQEEAFKN 355 Query: 358 RTQFFMQ 364 F + Sbjct: 356 LKALFGE 362 >gi|288817343|ref|YP_003431690.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6] gi|288786742|dbj|BAI68489.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6] gi|308750950|gb|ADO44433.1| transcription termination factor NusA [Hydrogenobacter thermophilus TK-6] Length = 327 Score = 303 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 128/342 (37%), Positives = 205/342 (59%), Gaps = 25/342 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L ++ + VA EK++ +V + ++I A + ++VE+ E I ++ + Sbjct: 5 LKKLIEQVAKEKNLPEWIVEGALKNAIALAVKKDRKLKEHLQVELLEE--GIKVYIVKRN 62 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E + +IS + D R+A +AK+ ++++ +AE + Sbjct: 63 NSETVRFPLEISTE----------------------DVNRIAAYAAKEEFLKELEKAEEE 100 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R YLEF ++ GEI G V+RV E G+V+VDLG GV+ + E I +E+ R G+R+K+ + Sbjct: 101 RGYLEFVEQEGEITVGIVRRVLENGDVLVDLGRVMGVLPKREQIPKESYRQGERIKALVL 160 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ + +++LSRTHP+F+ KL EVPEI +G +++KA++R+PG RAK+ V + D Sbjct: 161 EVRKHRGRYEIILSRTHPKFLRKLLEAEVPEIKSGEIEIKAITREPGERAKVLVHAKDMK 220 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG VG+RGSR+ V EL EKID++ W+ + + +L PA VTKV L R Sbjct: 221 MDPVGVIVGLRGSRINPVSKELSGEKIDVIRWTENVEELIKKSLSPAPVTKVRLIPKDKR 280 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 EV VPKE+LSLAIG+ G NV+LA+++TGW ID+++EE+ Sbjct: 281 AEVAVPKEKLSLAIGKHGVNVKLANRITGWYIDVLSEEDFEK 322 >gi|85057852|ref|YP_456768.1| transcription elongation factor NusA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789957|gb|ABC65689.1| N utilization substance protein A [Aster yellows witches'-broom phytoplasma AYWB] Length = 357 Score = 303 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 192/358 (53%), Gaps = 12/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N +LL D +A E +D+D V+ A + + + S ++ + + +I Sbjct: 1 MISKNFFKLL---DKIAQESGLDKDQVIDAFAKGLISGCKKNHKVKS-CKIHLKEDKSEI 56 Query: 61 SLFRLLEVVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E + I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATISTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 K +++ + +R+ Y FK + G++IS + ++L ++ + E S Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ++ G+R++ ++ +V++ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 177 NEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ +FS D+ ID +G+C+G R +R++ V+ L+ EKID+ +WS D + NAL+P Sbjct: 237 GERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIKILKGEKIDLFIWSDDPQELIANALKP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I Sbjct: 297 ASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQIE 354 >gi|260578921|ref|ZP_05846824.1| N utilization substance protein A [Corynebacterium jeikeium ATCC 43734] gi|258602895|gb|EEW16169.1| N utilization substance protein A [Corynebacterium jeikeium ATCC 43734] Length = 292 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 32/309 (10%) Query: 52 EINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 +I+P +G+++++++ ++D ++ G + D P +FGR Sbjct: 2 DIDPISGEVTIYQV--------------------EKDEEGNVTGRIDD--TPKNFGRDGA 39 Query: 112 QSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDLG----NSDG 163 + ++ I +++ A +Y E+ + ++SG V + E G IV LG DG Sbjct: 40 LAVREAIRFRIKSARVQNRYDEYAELRYRVVSGVVSADARANERGVTIVHLGTEANGQDG 99 Query: 164 VIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 I E I E L G RVK+++ DV R Q+ LSRTHP+ + LF +EVPE+ +G Sbjct: 100 QILPAEHIPGEELEHGMRVKAFVTDVINNANRMVQINLSRTHPELVKGLFALEVPEVADG 159 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 V++ +V+R+ G R K+AV S+ ++ GAC+G RG RV ++ EL EKIDI+ +S D Sbjct: 160 SVEIVSVAREAGHRTKIAVRSTVKGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDD 219 Query: 283 SATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ATFV NAL P+ V V + D ++ +VP QLSLAIGR GQN RLA++LTGW IDI Sbjct: 220 PATFVGNALSPSKVVSVKVTDPEMQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDI 279 Query: 342 ITEEEDSIN 350 +E + + Sbjct: 280 RSETDAAAE 288 >gi|291276369|ref|YP_003516141.1| transcription termination factor [Helicobacter mustelae 12198] gi|290963563|emb|CBG39395.1| transcription termination factor [Helicobacter mustelae 12198] Length = 369 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 180/335 (53%), Gaps = 6/335 (1%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + +AYEK I D+VL ++ + I K A+ VE +P+ + L L V Sbjct: 1 MDIIEIIAYEKGIPYDMVLDIVKNLIIKTAKQEINEEIQYSVEESPKEKTLKLIHNLTVC 60 Query: 70 EEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + + + I+LK A++ D S+ IG ++ L + R V Q + +++ Sbjct: 61 SDEDEKAENDKHHFIALKDAKNIDASLSIGDIIKSELTLENMSRGTVNKIFQDLEYQLQR 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + ++ + FK+K+G+I+SG V V+ N +++ + ++ I E + GD + Sbjct: 121 SMEEQLFKSFKEKIGKIVSGVVLEVDAQENTFIEIHDIRAILPLKNRIKGERFQNGDTIS 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V+ ++ G + LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+AVFS Sbjct: 181 AILKFVKMDKNGIYLELSRTTPKMLEELLMLEVPEIKDGEVIIQKTARIPGDRAKVAVFS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ ID +G+ VG++G R+ AV +L E ID + +S F+ AL PA + V + + Sbjct: 241 TNPKIDAIGSTVGVKGVRINAVGRQLNGENIDCIEYSDVPEIFITRALAPANIINVQIKQ 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + +V + Q S AIG+ G N+RL S LTG+ Sbjct: 301 EELIAKVKLMASQKSKAIGKNGVNIRLVSMLTGYN 335 >gi|224438382|ref|ZP_03659309.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] gi|313144824|ref|ZP_07807017.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] gi|313129855|gb|EFR47472.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] Length = 398 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 180/358 (50%), Gaps = 25/358 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I D +AY+K +D VVL ++ + + K A+ + VE + + + LF + Sbjct: 3 KILDIIDLIAYDKGLDNGVVLEIVKNGLIKIAQEEINPLYHYIVEPDVKERILKLFYRKK 62 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + E+ I L A++ + +G + L + R A+ + + Sbjct: 63 VCADDVKLTEEDLATSIPLSQAKEFG-DVSVGDELDCELQLDEMSRGAINKLFLNLEYNL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + D+ F+ ++G+I++G V V E GN V++ + ++ + I E+ + GD Sbjct: 122 QRSIEDQILQGFRAQLGKIVNGQVVGVDERGNTFVEIDSIRALLPQKNRIKGESFKVGDT 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ + V + G QV LSRT P+F+ +L +EVPEI + V + +R PG RAK+AV Sbjct: 182 IRAVLKFVGINKNGLQVELSRTTPKFLEELLALEVPEIKDNEVMIFKSARIPGDRAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S++ IDP+G CVG++G R+ AV EL +E ID V + F+ AL PA + V + Sbjct: 242 YSNNPRIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFIAKALTPAQILSVKI 301 Query: 302 DEDV------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E + V++ +Q S AIG+ G N+RLAS L I++ Sbjct: 302 QEQNIEQSERENMEGEKEKNERKKAIVLIKSDQKSKAIGKGGVNIRLASMLCDCDIEL 359 >gi|254373566|ref|ZP_04989053.1| hypothetical protein FTCG_01522 [Francisella tularensis subsp. novicida GA99-3549] gi|151571291|gb|EDN36945.1| hypothetical protein FTCG_01522 [Francisella novicida GA99-3549] Length = 344 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 176/314 (56%), Gaps = 32/314 (10%) Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRV 262 + + LF +EVPE+ ++ + V R+PG R+K+ V S+D IDP GACVG+RGSR+ Sbjct: 60 SSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTVKSNDQRIDPCGACVGVRGSRI 119 Query: 263 QAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSL 319 ++++EL EK+D+++W+ D + IN+L P A + +V +DE+ ++++V +E LS Sbjct: 120 HSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSK 179 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 AIG+ G NVRLAS L GW I+++++ E + + F++A+++D A +L+ E Sbjct: 180 AIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM----SIVEKFVEALDIDHDFALVLIEE 235 Query: 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439 G +E+LA + +E+ IEGFDEE E+Q RA+ + + +++L Sbjct: 236 GIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVILSQA------LGGKKPAQDLLD 289 Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVE 499 + G+ + L +N I TMEDLA SVD+L L + ++Q Sbjct: 290 MQGMSLDLAEQLAQNNIVTMEDLAELSVDEL-----------------LDIVDMDEEQAT 332 Query: 500 SMIIHARYKMGWIE 513 ++I+ AR W E Sbjct: 333 NLIMQARAP--WFE 344 >gi|42565347|gb|AAS20956.1| NusA [Clover phyllody phytoplasma] Length = 357 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 193/358 (53%), Gaps = 12/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N +LL D +A E+ +D+D V+ A + + + S ++++ + +I Sbjct: 1 MISKNFFKLL---DKIAQERDLDKDQVIGAFAKGLISGCKKNHKVKS-CKIQLKEDKSEI 56 Query: 61 SLFRLLEVVEEVENYT------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E T I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 K +++ + +R+ Y FK + G++IS + ++L ++ + E S Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 177 NEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS D + NAL+P Sbjct: 237 GERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSDDPQELIANALKP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I Sbjct: 297 ASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQIE 354 >gi|39938634|ref|NP_950400.1| transcription elongation factor NusA [Onion yellows phytoplasma OY-M] gi|39721743|dbj|BAD04233.1| transcription terminator [Onion yellows phytoplasma OY-M] Length = 357 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 108/356 (30%), Positives = 193/356 (54%), Gaps = 12/356 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N +LL D +A E+ +D+D V+ A + + + S ++E+ + +I Sbjct: 1 MISKNFFKLL---DKIAQERDLDKDQVIDAFAKGLISGCKKNHKVKS-CKIELKEDKSEI 56 Query: 61 SLFRLLEVVEEVENYT------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E T I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEL 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 K +++ + +R+ Y FK + G++IS + ++L ++ + E S Sbjct: 117 KNQFNEELTKKKRESIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 177 NEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ + S D+ +D +G+C+G R +R++ V+ L+DEK+D+ VWS D + NAL+P Sbjct: 237 GERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKDEKVDLFVWSDDPQELIANALKP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ Sbjct: 297 ASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQ 352 >gi|32266771|ref|NP_860803.1| transcription elongation factor NusA [Helicobacter hepaticus ATCC 51449] gi|32262823|gb|AAP77869.1| transcription termination factor NusA [Helicobacter hepaticus ATCC 51449] Length = 375 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 107/356 (30%), Positives = 181/356 (50%), Gaps = 11/356 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I D +AY+K ++ VL ++ + + K A+ D VE + + + LF ++ Sbjct: 3 KILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRMK 62 Query: 68 VVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + ++ + + + L A+ + IG V L R A+ + + Sbjct: 63 VCADEQDLSEENLGTFLPLSQAKGLG-DVSIGDEVDCELQLDAMSRGAINKLFLNLEYNL 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + ++ F+ VG+I++G V ++ GN +++ + ++ + I EN + GD Sbjct: 122 QRSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEIESIRAILPQKNRIKGENFKVGDC 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + V + G QV LSRT P+F+ +L MEVPEI + V + +R PG RAK+AV Sbjct: 182 VRAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+ + IDP+G CVG++G R+ AV EL +E ID V + FV AL PA V V + Sbjct: 242 YSNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSVKI 301 Query: 302 DEDV----GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +E + V + EQ S AIG+ G N+RLAS L I++ E + Sbjct: 302 EEAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQEITESKPLENE 357 >gi|162447183|ref|YP_001620315.1| transcription elongation factor NusA [Acholeplasma laidlawii PG-8A] gi|161985290|gb|ABX80939.1| transcription termination factor [Acholeplasma laidlawii PG-8A] Length = 358 Score = 296 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 175/350 (50%), Gaps = 9/350 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 Q + VA + ++++ V + A + G + RVE E ++ ++ V Sbjct: 6 FFQNIEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYGQYYV 64 Query: 69 VEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + E E + L+ A+ S G ++ + P +F A + K + + Sbjct: 65 LPEGELNLELDKKYTFLKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRFNEVL 124 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 + +++ Y KD E+++ V E +++ ++ + E + + GDR Sbjct: 125 NQIKKENIYQGLKDLQYEMVTARVLEEEKDFYRIEINKDVITMLPKKEALPTDKFHVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ DV + +GP++ +SRTH + +L VPEI +G ++V ++RDPG R+K+ + Sbjct: 185 IKVYVTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRSKVGL 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-V 300 S++ ++D +GA VG G R++ + L EKID+ WS + + N+L+PA V V Sbjct: 245 KSNNENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVVAVTR 304 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 ++ IVP QLSLAIG+ GQNV+LA Q +GW+IDI +E + Sbjct: 305 VNPKEKSALAIVPDAQLSLAIGKLGQNVKLAVQASGWSIDIKSETTAAEE 354 >gi|325138660|gb|EGC61216.1| Transcription elongation protein nusA [Neisseria meningitidis ES14902] Length = 277 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 115/274 (41%), Positives = 173/274 (63%), Gaps = 9/274 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P +I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRR--EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +AV ++D IDP G C+G+RGSRV AV EL E Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGE 277 >gi|145220365|ref|YP_001131074.1| transcription elongation factor NusA [Prosthecochloris vibrioformis DSM 265] gi|145206529|gb|ABP37572.1| NusA antitermination factor [Chlorobium phaeovibrioides DSM 265] Length = 551 Score = 295 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 120/395 (30%), Positives = 208/395 (52%), Gaps = 29/395 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 104 IDESLEVGDFYEEGPIKLDEYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVVAA 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R R+K Y+ ++ RE+ Sbjct: 164 EVYQVRSNEVIFTYNTTKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKIRLE 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 224 DGTIEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + V Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYNDEPQVYISRALQPAKIDPLTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ I++ D I++ + Sbjct: 344 ADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIEVYR---DVIDKSMEDPTDID 400 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + + + L+ G + + + EI Sbjct: 401 IIEFREEFGDDMIYQLLDAGLDTAKRVLKAGVDEI 435 >gi|197294650|ref|YP_001799191.1| transcription elongation factor NusA [Candidatus Phytoplasma australiense] gi|171853977|emb|CAM11940.1| Transcription elongation factor [Candidatus Phytoplasma australiense] Length = 357 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 178/351 (50%), Gaps = 12/351 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S + L D ++ E+ + ++ V+ + + + RV + ++ Sbjct: 1 MISKGFFKFL---DKISQERDLPKEEVVEAFTKGLIAGCKKN-NRVKSCRVHLKENKNEV 56 Query: 61 SLFRLLEVVEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ VV+E ISL+ A+ +G V+ + P DF A++ Sbjct: 57 LLYKQFIVVDETNANTINLKEWTPISLEEAQKIKLHAKVGQVLEIKVNPKDFNLYAIKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG-VIRRDETISR 173 K +++ + +R+ Y FK + G++IS V ++L ++ + ET Sbjct: 117 KNQFNEELTKRKRESVYQFFKQQEGKLISAKVISENEKFYNLELEKEIATLLLKKETSGN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 G+R++ ++ +VR+ + P++ +S H +VK+F +PEI GIV++ ++R Sbjct: 177 NLPHIGERIQVFLLEVRKTSKWPKIFVSHNHVGLVVKVFEENIPEIQEGIVKIMTIARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ + S D +DP+G+C+G R++ ++ L+ EKID+ WS D + NALRP Sbjct: 237 GERTKIGLVSYDPQVDPIGSCIGENSDRIRNIIKILKGEKIDLFRWSEDEKELISNALRP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A V++ ++ I+P +Q SLAIG+ G+NV+LA+++T W IDI T Sbjct: 297 AQCIDVIIKNDRNKHALAIIPDDQFSLAIGKLGKNVKLAAEVTKWNIDIKT 347 >gi|237751824|ref|ZP_04582304.1| transcription termination factor NusA [Helicobacter bilis ATCC 43879] gi|229373190|gb|EEO23581.1| transcription termination factor NusA [Helicobacter bilis ATCC 43879] Length = 384 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 188/375 (50%), Gaps = 15/375 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L I + +A E + +D V+ + DS+ K A+ ++ V + ++ L + + Sbjct: 3 KILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKMI 62 Query: 68 VVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V ++ + + I L AR +++ G + + R AV + I +++ Sbjct: 63 VCDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + F+ +G I+ G V V+ GN +++G + ++ I E + G V Sbjct: 123 KLNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGETRAILSLKNRIKGEKFKVGQPV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 +S + VR + G ++ LSRT P+ + +L +EVPEI +G V + ++R PG +AK+A++ Sbjct: 183 RSILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVALY 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 +++ IDP+G+ VG RG R+ AV EL E ID + +S FV +L PA V V L Sbjct: 243 TNNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVKLQ 302 Query: 302 ----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-----ITEEEDSINRQ 352 +E+ + V + K Q S AIG+ G N+RLAS LTG+ ++ E+ + Sbjct: 303 KADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFELQEVADKPSEQITTKDS 362 Query: 353 KDFNERTQFFMQAIN 367 + +E + ++A+ Sbjct: 363 TEKDEDKKLGLEALE 377 >gi|258615949|ref|ZP_05713719.1| transcription elongation factor NusA [Enterococcus faecium DO] Length = 222 Score = 290 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 134/221 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + Sbjct: 2 SKEMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREA Sbjct: 62 KEVTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y Sbjct: 122 ERTIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 + V +GPQV +SR+HP + +LF EVPE+Y+GIV++ Sbjct: 182 VSRVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEI 222 >gi|194335549|ref|YP_002017343.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|194308026|gb|ACF42726.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 514 Score = 289 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 124/395 (31%), Positives = 211/395 (53%), Gaps = 29/395 (7%) Query: 27 VLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 + ++ D IQK R Y + + INPE GD ++ L ++VEE++ + +I+LK R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVEEIDIESIEITLKEVRK 103 Query: 87 RDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 D S++IG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGEI++G Sbjct: 104 IDDSLEIGDYYEEGPIRLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEIVAG 163 Query: 145 TVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ------ 193 V +V VI + V+ + E + ++N R R+K Y+ + RE+ Sbjct: 164 EVYQVRANEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRLD 223 Query: 194 -----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV Sbjct: 224 DGSMVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAVE 283 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVV 300 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + V Sbjct: 284 STSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPLTVH 343 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ D I++ + Sbjct: 344 ADVKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYR---DVIDKSTEDPTDID 400 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + + + L+ G +++ + EI Sbjct: 401 IIEFREEFGDDMIYQLLDGGLDTAKKVLKAGVDEI 435 >gi|218661268|ref|ZP_03517198.1| transcription elongation factor NusA [Rhizobium etli IE4771] Length = 189 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 140/189 (74%), Positives = 163/189 (86%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 MVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV Sbjct: 1 MVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120 Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 VRLASQLTGW IDI+TE E+S RQK+FNERT FM +++VDE++ +L +EGFA VEEL Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEEL 180 Query: 388 ACVKISEIA 396 A V + EI+ Sbjct: 181 AYVDLDEIS 189 >gi|289548941|ref|YP_003473929.1| NusA antitermination factor [Thermocrinis albus DSM 14484] gi|289182558|gb|ADC89802.1| NusA antitermination factor [Thermocrinis albus DSM 14484] Length = 327 Score = 286 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 125/342 (36%), Positives = 203/342 (59%), Gaps = 25/342 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L ++ + VA EK++ +V + +SI A + D+ V++ + I + + Sbjct: 5 LRRLIEQVAKEKNLPEWLVERALRNSIALAVKKSQKIREDVEVQLEDD--HIKAYLVR-- 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 R +D +I + + P D R+A +AK+ ++++ AE + Sbjct: 61 ----------------RSKDQTIKLP----IDIEPADMDRIAAYAAKEEFLKELERAEEE 100 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R YLEF + GEI+ G V++V E G+++VDLG GV+ + E I +E+ + GDR+++ + Sbjct: 101 RSYLEFVELEGEIVVGIVRKVQEDGDLLVDLGKVMGVLPKKEQIPKEHYKVGDRLRALLL 160 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ + +++LSRTHP+F+ KL EVPEI G ++V+A++R+PG RAK+ V S+DS Sbjct: 161 EVRKRRGKYEIILSRTHPRFLKKLLEAEVPEIKEGYIKVEAIAREPGERAKVLVSSTDSR 220 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG VG+RGS++ + EL E+ID++ S + +L PA V+ V L + R Sbjct: 221 MDPVGVVVGVRGSKIAPITEELSGERIDVIKKSDSVEELIKRSLAPAPVSAVRLFPEEKR 280 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 EV VPKE+LSLAIG+ G NVRLAS++TGW ID+ +EE+ Sbjct: 281 AEVAVPKEKLSLAIGKGGVNVRLASKITGWRIDVYSEEDFEK 322 >gi|13507893|ref|NP_109842.1| transcription elongation factor NusA [Mycoplasma pneumoniae M129] gi|2499338|sp|P75591|NUSA_MYCPN RecName: Full=Transcription elongation protein nusA gi|1674384|gb|AAB96325.1| N-utilization substance protein A-like protein [Mycoplasma pneumoniae M129] Length = 540 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 186/358 (51%), Gaps = 14/358 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LLQ+ VA K++ D V+ + ++ + + ++ V I+ G + + +L +V Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLN-YVNVEVNIDFNKGLMQIEQLFDV 70 Query: 69 VE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ E + ++ L A+ +P++++GGV+ P+ D + + QK+ E Sbjct: 71 VDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQKINET 130 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDGVIRRDETISRENLRPG 179 +F ++VG++I V+ ++ IV+L + G + + E E L G Sbjct: 131 AFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNLETTKGYMPKRELSKGEKLDIG 190 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + I +++++ + LSR+ + + L + PEI NG +++K + R PG+++K+ Sbjct: 191 KKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPGTKSKV 250 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D +DP+ A +G +G R++ + E E IDIV+W+ D F++NA+ PA V Sbjct: 251 AVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVGY 310 Query: 300 VL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW-TIDIITEEEDSINRQK 353 + DE IE++VP Q++ G +G N+RL S LTGW ++D+ TE++ + + Sbjct: 311 NILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQGIE 368 >gi|12044993|ref|NP_072803.1| transcription elongation factor NusA [Mycoplasma genitalium G37] gi|255660291|ref|ZP_05405700.1| transcription elongation factor NusA [Mycoplasma genitalium G37] gi|1352607|sp|P47387|NUSA_MYCGE RecName: Full=Transcription elongation protein nusA gi|3844734|gb|AAC71359.1| transcription termination factor NusA [Mycoplasma genitalium G37] gi|166078938|gb|ABY79556.1| transcription termination factor NusA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 531 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 108/358 (30%), Positives = 184/358 (51%), Gaps = 14/358 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL I VA K++ + V+ + ++++A + ++ V IN + G I++ +L V Sbjct: 33 LLAIIKNVAKTKNLSIEEVVFCLKTALEQAYKKHLNF-VNVEVNINFDKGIINVEQLFNV 91 Query: 69 V-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +E E+Y +I L+ A + S+ +G V+ P+P + + + QK+ E Sbjct: 92 VSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSDLINKMIAIFNQKISET 151 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDGVIRRDETISRENLRPG 179 EF +VGE+I V+ ++ I++L + G I + E E L G Sbjct: 152 NFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKGYISKRELSKGERLEIG 211 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + I +++R+ + LSR+ + + L PEI NG + +K + R PG ++K+ Sbjct: 212 KKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKIERSPGVKSKI 271 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D ++DPV A +G +G +++ + E E IDIV W+ D F+INA+ PA V Sbjct: 272 AVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPAEVIGY 331 Query: 300 VL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT-IDIITEEEDSINRQK 353 + DE IEV+VP Q++ G +G N+RL S LTGW +D+ +E++ S K Sbjct: 332 NILQDDERDTSIEVVVPANQIANVFGFKGVNIRLISNLTGWNSVDVYSEKDASEANIK 389 >gi|114777564|ref|ZP_01452545.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] gi|114552035|gb|EAU54552.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] Length = 254 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 111/273 (40%), Positives = 159/273 (58%), Gaps = 19/273 (6%) Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + S+D S+DPVGACVGMRG+RVQAVV EL EKIDI+ W+ D A FV+NAL PA + +V+ Sbjct: 1 MISTDPSVDPVGACVGMRGARVQAVVNELHGEKIDIIEWTDDPAAFVVNALAPAEIERVM 60 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE V +E L++AIGRRGQNVRLAS L+GW I++++ E+ R ++ + Sbjct: 61 VDEATNTIEAAVSEENLAIAIGRRGQNVRLASDLSGWHIELMSTGEEKERRHEEVVKART 120 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + ++VDE A +LV EGF +EELA +IA+IEG D E A E+Q RAR L Sbjct: 121 VFQEGLDVDEAFATVLVDEGFFSLEELAYCAAEDIAAIEGLDAEIAQELQKRARNVLLDQ 180 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + E G + L +PG+ +I L + T+E LA + D++ Sbjct: 181 ALKQ--GSEEAGSAVTLLDLPGMTREIAEQLAAREMTTVESLADAAGDEIEDIE------ 232 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +++II AR GW + Sbjct: 233 -----------GLSREEADALIIAAREACGWFD 254 >gi|284992351|ref|YP_003410905.1| NusA domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065596|gb|ADB76534.1| NusA domain protein [Geodermatophilus obscurus DSM 43160] Length = 524 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 26/240 (10%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 AV EK I D V+ + ++ A R G +RV ++ +TG++++ Sbjct: 7 ALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVL-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 A++ P ++ D P DFGR+A +AKQVI+Q++R+AE ++ + Sbjct: 59 ------------AQELGPDGEVVREWDD--TPSDFGRIAASTAKQVIVQRLRDAEHEQTF 104 Query: 132 LEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ K G+I+SG V+ R G V+VD+G + V+ E + E+ G R+++Y+ Sbjct: 105 GEYAGKEGDIVSGIVQADQRRNASGTVLVDIGKVEAVLPAAEQVPGESYPHGSRLRAYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV +SRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV +S Sbjct: 165 SVARTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRTSVPR 224 >gi|148925839|ref|ZP_01809526.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8486] gi|145844825|gb|EDK21929.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8486] Length = 300 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 91/264 (34%), Positives = 153/264 (57%), Gaps = 4/264 (1%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I+L A+ P ++IG ++ + GR AV + + + +++ + ++K+KV Sbjct: 13 IALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLLEQTIFEKYKNKV 72 Query: 139 GEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+++ GTV RV+ N +++ + R I E + GD VK+ I V + +G + Sbjct: 73 GQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAVIRRVYTD-KGIK 131 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ ++IDPVGA VG+ Sbjct: 132 IELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANGANIDPVGATVGV 191 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +G R+ AV EL +E ID + ++ +S + AL PAIV V +++ + V + EQ Sbjct: 192 KGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKIED--KKAIVSLNSEQK 249 Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341 S AIG+ G N+RLAS L+G+ I++ Sbjct: 250 SKAIGKNGINIRLASMLSGYEIEL 273 >gi|82407871|pdb|2ASB|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407889|pdb|2ATW|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407891|pdb|2ATW|C Chain C, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex Length = 251 Score = 276 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 100/223 (44%), Positives = 141/223 (63%), Gaps = 9/223 (4%) Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVK 183 EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Sbjct: 1 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLR 60 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S Sbjct: 61 CYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRS 120 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLD 302 + + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V V+D Sbjct: 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVID 180 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 181 QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 >gi|87042915|gb|ABD16467.1| NusA [Tomato big bud phytoplasma] Length = 319 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 92/316 (29%), Positives = 169/316 (53%), Gaps = 9/316 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE------NYTCQISLKVARDRD 88 + + + S ++ + + +I L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIHLKEDKSEIILYKQFLVADEATISTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +V++ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ +FS D+ ID +G+C+G R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EKID+ +WS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKIDLFIWSDDPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDII 342 N +LA ++T W IDI Sbjct: 304 NAKLAVEVTKWNIDIK 319 >gi|317014930|gb|ADU82366.1| transcription elongation factor NusA [Helicobacter pylori Gambia94/24] Length = 395 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 194/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVI--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 VKKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENAENESEKET 381 >gi|261840189|gb|ACX99954.1| transcription elongation factor NusA [Helicobacter pylori 52] Length = 395 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVI--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + ++R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQIKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELNTEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|15612472|ref|NP_224125.1| transcription elongation factor NusA [Helicobacter pylori J99] gi|11387009|sp|Q9ZJA6|NUSA_HELPJ RecName: Full=Transcription elongation protein nusA gi|4156020|gb|AAD06980.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99] Length = 395 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 189/365 (51%), Gaps = 31/365 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIIT 343 I+ T Sbjct: 361 IEFET 365 >gi|317011648|gb|ADU85395.1| transcription elongation factor NusA [Helicobacter pylori SouthAfrica7] Length = 395 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 189/365 (51%), Gaps = 31/365 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS+++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSNNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSTEEKESIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIIT 343 I+ T Sbjct: 361 IEFET 365 >gi|307638171|gb|ADN80621.1| Transcription termination protein [Helicobacter pylori 908] Length = 395 Score = 274 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVV--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 VKKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENAENESEKET 381 >gi|261838788|gb|ACX98554.1| transcription termination factor A [Helicobacter pylori 51] Length = 395 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKILIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|87042921|gb|ABD16470.1| NusA [Tomato yellows phytoplasma] Length = 319 Score = 273 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 93/316 (29%), Positives = 170/316 (53%), Gaps = 9/316 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++++ + +I L++ V +E T I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDII 342 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDIK 319 >gi|188528283|ref|YP_001910970.1| transcription elongation factor NusA [Helicobacter pylori Shi470] gi|188144523|gb|ACD48940.1| transcription elongation factor NusA [Helicobacter pylori Shi470] Length = 395 Score = 273 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 195/382 (51%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIGELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|325996770|gb|ADZ52175.1| Transcription termination protein [Helicobacter pylori 2018] gi|325998365|gb|ADZ50573.1| Transcription termination protein [Helicobacter pylori 2017] Length = 395 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVV--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS +S IDP+G VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNSRIDPIGTAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 VKKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENAENESEKET 381 >gi|217031863|ref|ZP_03437366.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128] gi|298735514|ref|YP_003728035.1| N utilization substance protein A [Helicobacter pylori B8] gi|216946515|gb|EEC25117.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128] gi|298354699|emb|CBI65571.1| N utilization substance protein A [Helicobacter pylori B8] Length = 395 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 189/365 (51%), Gaps = 31/365 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 VKKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIIT 343 I+ T Sbjct: 361 IEFET 365 >gi|87042911|gb|ABD16465.1| NusA [Blueberry stunt phytoplasma] Length = 319 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 94/316 (29%), Positives = 170/316 (53%), Gaps = 9/316 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++++ + +I L++ V +E T I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAKQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+CVG R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCVGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKVDLFVWSEDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDII 342 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDIK 319 >gi|15646123|ref|NP_208305.1| transcription elongation factor NusA [Helicobacter pylori 26695] gi|2499337|sp|P55977|NUSA_HELPY RecName: Full=Transcription elongation protein nusA gi|2314694|gb|AAD08555.1| transcription termination factor NusA (nusA) [Helicobacter pylori 26695] Length = 395 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 194/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENAENESEKET 381 >gi|317178222|dbj|BAJ56011.1| transcription elongation factor NusA [Helicobacter pylori F16] Length = 395 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ +++V V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMVSKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNTRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAKEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|317179693|dbj|BAJ57481.1| transcription elongation factor NusA [Helicobacter pylori F30] Length = 395 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++ Sbjct: 61 VLEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|317013286|gb|ADU83894.1| transcription elongation factor NusA [Helicobacter pylori Lithuania75] Length = 395 Score = 272 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGATVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|87042919|gb|ABD16469.1| NusA [Strawberry phytoplasma FL4] Length = 319 Score = 272 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 169/316 (53%), Gaps = 9/316 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++++ + ++ L++ V +E T I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEMILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P G V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKTGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 ++K+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 184 VIKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKVDLFVWSNDPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDII 342 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDIK 319 >gi|108563823|ref|YP_628139.1| transcription elongation factor NusA [Helicobacter pylori HPAG1] gi|107837596|gb|ABF85465.1| transcription termination factor [Helicobacter pylori HPAG1] Length = 395 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 195/382 (51%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 VKKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|308062778|gb|ADO04666.1| transcription elongation factor NusA [Helicobacter pylori Cuz20] Length = 395 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|332674287|gb|AEE71104.1| transcription termination factor NusA [Helicobacter pylori 83] Length = 395 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|315585900|gb|ADU40281.1| transcription termination factor NusA [Helicobacter pylori 35A] Length = 395 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|87042917|gb|ABD16468.1| NusA [Paulownia witches'-broom phytoplasma] Length = 319 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 171/316 (54%), Gaps = 9/316 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++E+ + +I L++ V +E T I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKDEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDII 342 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDIK 319 >gi|297380632|gb|ADI35519.1| transcription termination factor NusA [Helicobacter pylori v225d] Length = 395 Score = 271 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSIKENAENESEKETQ 382 >gi|308185285|ref|YP_003929418.1| transcription elongation factor NusA [Helicobacter pylori SJM180] gi|308061205|gb|ADO03101.1| transcription elongation factor NusA [Helicobacter pylori SJM180] Length = 395 Score = 271 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|317181199|dbj|BAJ58985.1| transcription elongation factor NusA [Helicobacter pylori F32] Length = 395 Score = 271 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|255024911|ref|ZP_05296897.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-208] Length = 180 Score = 271 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 127/180 (70%) Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR Sbjct: 1 VREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDR 60 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V Sbjct: 61 IKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISV 120 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V++ Sbjct: 121 YTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIV 180 >gi|254780024|ref|YP_003058131.1| transcription elongation factor NusA [Helicobacter pylori B38] gi|254001937|emb|CAX30190.1| Transcription elongation protein NusA [Helicobacter pylori B38] Length = 395 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 188/365 (51%), Gaps = 31/365 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIIT 343 I+ T Sbjct: 361 IEFET 365 >gi|308064276|gb|ADO06163.1| transcription elongation factor NusA [Helicobacter pylori Sat464] Length = 395 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 193/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIGELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|289810678|ref|ZP_06541307.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 236 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 153/235 (65%), Gaps = 6/235 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 236 >gi|317010112|gb|ADU80692.1| transcription elongation factor NusA [Helicobacter pylori India7] Length = 395 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPLEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|208435381|ref|YP_002267047.1| transcription termination factor [Helicobacter pylori G27] gi|208433310|gb|ACI28181.1| transcription termination factor [Helicobacter pylori G27] Length = 395 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 194/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENAENESEKET 381 >gi|207092969|ref|ZP_03240756.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_AG0C1] Length = 387 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 195/382 (51%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|308183617|ref|YP_003927744.1| transcription elongation factor NusA [Helicobacter pylori PeCan4] gi|308065802|gb|ADO07694.1| transcription elongation factor NusA [Helicobacter pylori PeCan4] Length = 395 Score = 270 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 194/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDSDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETILSVKENAENESEKET 381 >gi|217034292|ref|ZP_03439709.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10] gi|216943264|gb|EEC22729.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10] Length = 395 Score = 269 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ ++ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKMIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCTRIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|317182719|dbj|BAJ60503.1| transcription elongation factor NusA [Helicobacter pylori F57] Length = 395 Score = 268 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 194/382 (50%), Gaps = 31/382 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYE+++ ++++ V+ + K ++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYERNLPKEMISKVIQGCLLKMVQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++ Sbjct: 61 VLEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERTQ 360 I+ T N + + + TQ Sbjct: 361 IEFETIPSVKENAENESEKETQ 382 >gi|87042913|gb|ABD16466.1| NusA [Maize bushy stunt phytoplasma] Length = 319 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 91/316 (28%), Positives = 171/316 (54%), Gaps = 9/316 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++++ + +I L++ V +E T I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y F+ + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKELKNQFNEELTKKKRENIYNFFEQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ ++R G R K+ + S D+ +D +G+C+G R +R++ ++ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGIARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNIIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKDEKVDLFVWSDDPQELISNALKPASCIQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDII 342 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDIK 319 >gi|109946702|ref|YP_663930.1| transcription elongation factor NusA [Helicobacter acinonychis str. Sheeba] gi|109713923|emb|CAJ98931.1| N utilization substance protein A [Helicobacter acinonychis str. Sheeba] Length = 395 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVVQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDEGLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS++S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + V Sbjct: 241 FFSNNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 +++ + + +V + + S AIG+ G NV LAS LT + Sbjct: 301 IKKIPIEELSAQEKELIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTSYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENTENEDEKET 381 >gi|210135681|ref|YP_002302120.1| transcription elongation factor NusA [Helicobacter pylori P12] gi|210133649|gb|ACJ08640.1| transcription termination factor A [Helicobacter pylori P12] Length = 395 Score = 267 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+E Sbjct: 3 KISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVE 60 Query: 68 VVEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 61 VLEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQL 120 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSD-GVIRRDETISRENLRPGD 180 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 121 EKALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 181 SIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV- 299 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ L PA + V Sbjct: 241 FFSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLVLAPAKILSVE 300 Query: 300 ---------------------VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V++ + + +V + + S AIG+ G NV LAS LTG+ Sbjct: 301 IKKIPIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYH 360 Query: 339 IDIITEEEDSINRQKDFNERT 359 I+ T N + + + T Sbjct: 361 IEFETIPSVKENAENESEKET 381 >gi|166012287|gb|ABY77760.1| transcription factor NusA [Paulownia witches'-broom phytoplasma] Length = 315 Score = 266 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 169/313 (53%), Gaps = 9/313 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++E+ + +I L++ V +E T I+L+ A+ Sbjct: 4 LISGCKKNHKVKS-CKIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 62 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF A++ K +++ + +R+ Y FK + G++IS + Sbjct: 63 PHAKIGQVIDIKVDPKDFNLYAIKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 122 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 123 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 182 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 183 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 242 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 243 ILKDEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 302 Query: 327 NVRLASQLTGWTI 339 NV+LA ++T W I Sbjct: 303 NVKLAVEVTKWNI 315 >gi|213022790|ref|ZP_03337237.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 177 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 91/172 (52%), Positives = 129/172 (75%) Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG Sbjct: 5 TYRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 64 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA Sbjct: 65 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPA 124 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V +V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Sbjct: 125 DVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDD 176 >gi|206896456|ref|YP_002247276.1| transcription termination factor NusA [Coprothermobacter proteolyticus DSM 5265] gi|206739073|gb|ACI18151.1| transcription termination factor NusA [Coprothermobacter proteolyticus DSM 5265] Length = 343 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 165/353 (46%), Gaps = 29/353 (8%) Query: 2 VSANRLE-----LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIR---VEI 53 + N+ E L + +A + + ++ + D++ A R + ++I Sbjct: 1 MEKNKSEAIEKALNEYIRQIASDLDLTPQEIIEALKDALVSAIRKELDIPKEAVGSAIKI 60 Query: 54 NPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 + ++ I A + + PL + RV++Q+ Sbjct: 61 EENGSSLKFLVNK-------DFVKTIPEDEA--------VSDWIEFPLS--NLSRVSIQT 103 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETI 171 A+ + ++ E +++ GE+++ V R + + +D+ + V+ E + Sbjct: 104 AENTLKNRMNEKSKEKAIKRIAQFSGEVVTARVIRRDPKTKLIYMDVDGVECVLEPSEQL 163 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 + PGD ++ + + Q V LSR+ P + LF +EVPE+ +G+V++ ++ Sbjct: 164 PTDRYAPGDSLRCLVLGAKNIPMYGQGVALSRSSPDLLKLLFTLEVPEVADGVVRIMGIA 223 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R PG R+K+AV S D +DP GAC+G +G R+QA+ L +EKID+V W D A + N Sbjct: 224 RKPGRRSKVAVMSIDPRLDPQGACIGYKGQRIQAISRSLANEKIDVVRWDTDPAKLIANV 283 Query: 291 LRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 L P V KV VLD R V + + + +G G+NV LA QLTGWTID+ Sbjct: 284 LSPGKVDKVEVLDPKNKRALVYTTPDNIKVVVGEDGENVELAEQLTGWTIDVR 336 >gi|169302736|gb|ACA53041.1| NusA [Wheat blue dwarf phytoplasma] Length = 317 Score = 263 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 90/314 (28%), Positives = 168/314 (53%), Gaps = 9/314 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT------CQISLKVARDRD 88 + + + S ++++ + +I L++ V +E T I+L+ A+ Sbjct: 4 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 62 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y K + G++IS + Sbjct: 63 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFSKQQEGKLISAKIIS 122 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 123 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 182 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 183 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 242 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 243 ILKGEKVDLFVWSDDPQELIANALKPASCPQVVIKDDINKYALAIVPDDQFSLAIGKLGK 302 Query: 327 NVRLASQLTGWTID 340 NV+LA ++T W I+ Sbjct: 303 NVKLAVEVTKWNIE 316 >gi|47458985|ref|YP_015847.1| transcription elongation factor NusA [Mycoplasma mobile 163K] gi|47458313|gb|AAT27636.1| N-utilization substance protein a [Mycoplasma mobile 163K] Length = 514 Score = 263 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 178/358 (49%), Gaps = 22/358 (6%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP-ETGD--ISLFRL-LEV----VEEV 72 + + V+ + ++I + + + + + I ETG+ I L+ L V VEE Sbjct: 26 DLSQKEVMDTLLNAITLIFNNDFDPNAKLDLVIEKSETGESKIKLYILNKLVTDYDVEEE 85 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 E Y ++++ A+ +PS+++ D +P F + V Q ++E ++ Sbjct: 86 EKYYS-MNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFTQSMKEFSKEYLIS 144 Query: 133 EFKDKVGEIISGTVKRVE----YGNVIVDL----GNSDGVIRRDETISRENLRPGDRVKS 184 ++ + G+II ++ + V + L G+ + + + GD V+ Sbjct: 145 KYGNLKGQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQNPNIEMVIGDYVEV 204 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV+ + RG +V++S T + + KL +E+PEI +G + + A+ R PG R+K+AV + Sbjct: 205 YVEDVKPDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKRIPGIRSKIAVSKT 264 Query: 245 D---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-- 299 IDP+GA VG +GSR+ + L EKID++++ + F+IN++ PA V + Sbjct: 265 SFAPDGIDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFIINSISPASVAHISK 324 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + DE V+VP + AIG+ GQNV+LA+ LT +DI++ + + N Sbjct: 325 INDEANNHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILSVTQAKEKGIELLNN 382 >gi|294660246|ref|NP_852895.2| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(low)] gi|284811901|gb|AAP56463.2| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(low)] gi|284930355|gb|ADC30294.1| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(high)] Length = 624 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 20/363 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S + L+ VA K+I + + +++ D+I +A I V I+ + G + Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLK 59 Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 +F+L +V+ EE + +I LK A +P+I +G L DF RV + Q Sbjct: 60 IFKLYKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRE 174 QK+ E + E+ K+ +I+ GTV++ E ++V+LG + + + E Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285 + K+AV S++ IDPV +G G R++++ L +E ID+ W+ D Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299 Query: 286 FVINALRPAIVTKVVL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + NA P + V + E +++IV + L IGR G NVRL S +TGW+ID Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359 Query: 343 TEE 345 ++ Sbjct: 360 SQS 362 >gi|114777565|ref|ZP_01452546.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] gi|114552036|gb|EAU54553.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] Length = 235 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 100/234 (42%), Positives = 155/234 (66%), Gaps = 1/234 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+LQ+ADAVA EKS+DR++VL M +++ AAR Y ++ EI+ +TG+I LF + Sbjct: 2 NVEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTY-PGLNVEAEIDRDTGEIRLFHV 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEVE+ +++++ A+ +G L P++ GR+A Q+AKQVI QK+REA Sbjct: 61 RVAVEEVEDQDNELTVEEAQALRDDAVLGSEFRTALAPIELGRIAAQTAKQVINQKIREA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+R E++ +VGE+I+G VKRVE GNV VDLG + V+ R++ + RE R GDRV++Y Sbjct: 121 ERERVIAEYEPRVGELITGIVKRVERGNVYVDLGRGEAVMYREDLLPRETFRQGDRVRAY 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + +VR + +GP V +SR+ +++LF EVPEI +G V ++ + P A+L Sbjct: 181 LREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234 >gi|195953996|ref|YP_002122286.1| transcription elongation factor NusA [Hydrogenobaculum sp. Y04AAS1] gi|195933608|gb|ACG58308.1| NusA antitermination factor [Hydrogenobaculum sp. Y04AAS1] Length = 322 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 112/345 (32%), Positives = 189/345 (54%), Gaps = 30/345 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + ++ + VA EK I +V + ++I R IR G I + + Sbjct: 5 IKKLIENVAKEKDIPAKIVEIALKNAIAYGIRK----EKHIR-------GKIYI----DF 49 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 ++ IS + D + D R+A +AK+ ++++ AER+ Sbjct: 50 ADDDTITAYIISGREKTKLD------------ISTEDLNRIAAYAAKEEFLKELENAERE 97 Query: 129 RQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R +LE+ + G I+ G V+ + IVDLG D + R E IS+E+ + DRVK+ ++ Sbjct: 98 RGFLEYVSQEGNIVHGIVREITKDQTAIVDLGPIDAELPRREQISKESFKKNDRVKALLF 157 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V++E+ P +LLSRTHP+F+ +L E+PE+ G+V++ +V+R+PG +AK+ V + D Sbjct: 158 SVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGLVKIISVAREPGEKAKVVVDTEDKK 217 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG +G++GS++ + EL E ID+V +S D F+ N PA + V E + Sbjct: 218 IDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDKKKFLENLFFPAKILDVR--ESDNQ 275 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 IEV V K+Q+SLAIG+RG N +LA ++ G ID++++E+ ++ Sbjct: 276 IEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMSKEDFDKLKK 320 >gi|218459797|ref|ZP_03499888.1| transcription elongation factor NusA [Rhizobium etli Kim 5] Length = 262 Score = 258 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 113/217 (52%), Positives = 151/217 (69%), Gaps = 1/217 (0%) Query: 304 DVGRIEVIVP-KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D RIEV V Q L QNVRLASQLTGW IDI+TE E+S RQK+FNERT F Sbjct: 33 DARRIEVFVSRTRQRRLRSVAAAQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNLF 92 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++ Sbjct: 93 MDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLEA 152 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GW+E K G + Sbjct: 153 EMDEKRKALGVQDELREIDGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWTERKNGETK 212 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 KF+G S + + E MI+ AR GWI +E +A Sbjct: 213 KFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLAK 249 >gi|284931121|gb|ADC31059.1| transcription elongation factor NusA [Mycoplasma gallisepticum str. F] Length = 622 Score = 257 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 175/363 (48%), Gaps = 20/363 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S + L+ VA K+I + + +++ D+I +A I V I+ + G + Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLK 59 Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 +F+L +V+ EE + +I L+ A +P+I +G L DF RV + Q Sbjct: 60 IFKLYKVIDDSVGEEEFDEINEIHLRDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRE 174 QK+ E + E+ K+ +I+ GTV++ E ++V+LG + + + E Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLVVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285 + K+AV S++ IDPV +G G R++++ L +E ID+ W+ D Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299 Query: 286 FVINALRPAIVTKVVL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + NA P + V + E +++IV + L IGR G NVRL S +TGW+ID Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359 Query: 343 TEE 345 ++ Sbjct: 360 SQS 362 >gi|13357878|ref|NP_078152.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762445|ref|YP_001752400.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11356991|pir||H82905 N-utilization substance protein a UU318 [imported] - Ureaplasma urealyticum gi|6899295|gb|AAF30727.1|AE002129_3 N-utilization substance protein a [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168828022|gb|ACA33284.1| transcription termination factor NusA [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 458 Score = 256 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 211/468 (45%), Gaps = 41/468 (8%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E ++ A + I+ +V+ S++ ++ +KA + + I+ + G I+ Sbjct: 4 SFKSKEFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYLRTHPGE-NFETNIDLKQGTINC 62 Query: 63 FRLLEVVE-------EVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 FR L VVE ++E + +I L AR + + IG ++ + +F + V Sbjct: 63 FRNLVVVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVG 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSD 162 ++ QK+ E R +K + ++I V +R E V V+L + Sbjct: 123 QIGSLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTL 182 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G + R + I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG Sbjct: 183 GYLSRKDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNG 242 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +++K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D Sbjct: 243 NIEIKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADD 302 Query: 283 SATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ NA+ + +++ E+ IV K+ L IGR G N+RL +++T W I Sbjct: 303 KRIFIANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNI 362 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ T E+ + N + F DE I + + +A I+ Sbjct: 363 DVKTIEQAF-----EENILYEKF------DEKIYRSWN---IESINKKNVTNDEMLALID 408 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCSIPGIDS 445 +++ + L+ + + E G ++E L + G + Sbjct: 409 SIEDDKIEQDVQL-NHPLKQQEKKVVSSNDEDGENDETQLEYLEGFED 455 >gi|171920241|ref|ZP_02931610.1| transcription termination factor NusA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508804|ref|ZP_02958262.1| transcription termination factor NusA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701622|ref|ZP_02971327.1| transcription termination factor NusA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902640|gb|EDT48929.1| transcription termination factor NusA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675756|gb|EDT87661.1| transcription termination factor NusA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700854|gb|EDU19136.1| transcription termination factor NusA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 458 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 211/468 (45%), Gaps = 41/468 (8%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E ++ A + I+ +V+ S++ ++ +KA + + I+ + G I+ Sbjct: 4 SFKSKEFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYSRTHPGE-NFETNIDLKQGTINC 62 Query: 63 FRLLEVVE-------EVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 FR L VVE ++E + +I L AR + + IG ++ + +F + V Sbjct: 63 FRNLVVVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVG 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSD 162 ++ QK+ E R +K + ++I V +R E V V+L + Sbjct: 123 QIGSLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTL 182 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G + R + I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG Sbjct: 183 GYLSRKDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNG 242 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +++K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D Sbjct: 243 NIEIKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADD 302 Query: 283 SATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ NA+ + +++ E+ IV K+ L IGR G N+RL +++T W I Sbjct: 303 KRIFIANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNI 362 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ T E+ + N + F DE I + + +A I+ Sbjct: 363 DVKTIEQAF-----EENILYEKF------DEKIYRSWN---IESINKKNVTNDEMLALID 408 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCSIPGIDS 445 +++ + L+ + + E G ++E L + G + Sbjct: 409 SIEDDKIEQDVQL-NHPLKQQEKKVVSSNDEDGENDETQLEYLEGFED 455 >gi|209554499|ref|YP_002284717.1| transcription elongation factor NusA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209542000|gb|ACI60229.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 458 Score = 253 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 209/468 (44%), Gaps = 41/468 (8%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ Sbjct: 4 SFKSKEFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINC 62 Query: 63 FRLLEVVE-------EVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 FR L VVE ++E + +I L AR + + IG + + DF + V Sbjct: 63 FRNLVVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVG 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSD 162 ++ QK+ E R +K + ++I V +R E V V+L + Sbjct: 123 QIGSLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTL 182 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G + R + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG Sbjct: 183 GYLSRKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNG 242 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +++K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D Sbjct: 243 NIEIKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADD 302 Query: 283 SATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ NA+ + +++ E+ IV KE L IGR G N+RL +++T W I Sbjct: 303 KRIFIANAIGLDKLKGLLVQENESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNI 362 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ T E+ + N + F DE I + + +A I+ Sbjct: 363 DVKTIEQAF-----EENVVYEKF------DEKIYRSWN---IESINKKNVTNDEMLALID 408 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCSIPGIDS 445 +E + + ++ L+ + + +++ L + G + Sbjct: 409 NMQDEKVEKT-EQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 455 >gi|195867649|ref|ZP_03079651.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660706|gb|EDX53961.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 460 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 209/468 (44%), Gaps = 41/468 (8%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ Sbjct: 6 SFKSKEFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINC 64 Query: 63 FRLLEVVE-------EVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 FR L VVE ++E + +I L AR + + IG + + DF + V Sbjct: 65 FRNLVVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVG 124 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSD 162 ++ QK+ E R +K + ++I V +R E V V+L + Sbjct: 125 QIGSLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTL 184 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G + R + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG Sbjct: 185 GYLSRKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNG 244 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +++K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D Sbjct: 245 NIEIKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADD 304 Query: 283 SATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ NA+ + +++ E+ IV KE L IGR G N+RL +++T W I Sbjct: 305 KRIFIANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNI 364 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ T E+ + N + F DE I + + +A I+ Sbjct: 365 DVKTIEQAF-----EENVVYEKF------DEKIYRSWN---IESINKKNVTNDEMLALID 410 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCSIPGIDS 445 +E + + ++ L+ + + +++ L + G + Sbjct: 411 NMQDEKVEKT-EQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 457 >gi|171920965|ref|ZP_02696343.2| transcription termination factor NusA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179145|ref|ZP_02964862.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024249|ref|ZP_02996946.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518622|ref|ZP_03004069.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524495|ref|ZP_03004495.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273614|ref|ZP_03206149.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551589|ref|ZP_03772535.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902989|gb|EDT49278.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208924|gb|EDU05967.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018911|gb|EDU56951.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997862|gb|EDU66959.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659708|gb|EDX53088.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249642|gb|EDY74423.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379404|gb|EEH01769.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 458 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 209/468 (44%), Gaps = 41/468 (8%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ Sbjct: 4 SFKSKEFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINC 62 Query: 63 FRLLEVVE-------EVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 FR L VVE ++E + +I L AR + + IG + + DF + V Sbjct: 63 FRNLVVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVG 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSD 162 ++ QK+ E R +K + ++I V +R E V V+L + Sbjct: 123 QIGSLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTL 182 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G + R + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG Sbjct: 183 GYLSRKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNG 242 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +++K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D Sbjct: 243 NIEIKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADD 302 Query: 283 SATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ NA+ + +++ E+ IV KE L IGR G N+RL +++T W I Sbjct: 303 KRIFIANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNI 362 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ T E+ + N + F DE I + + +A I+ Sbjct: 363 DVKTIEQAF-----EENVVYEKF------DEKIYRSWN---IESINKKNVTNDEMLALID 408 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCSIPGIDS 445 +E + + ++ L+ + + +++ L + G + Sbjct: 409 NMQDEKVEKT-EQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 455 >gi|256370754|ref|YP_003108579.1| transcription elongation factor NusA [Candidatus Sulcia muelleri SMDSEM] gi|256009546|gb|ACU52906.1| transcription elongation factor NusA [Candidatus Sulcia muelleri SMDSEM] Length = 342 Score = 252 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 90/318 (28%), Positives = 174/318 (54%), Gaps = 3/318 (0%) Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTCQISLKVAR 85 +S++ S + YG + + ++ N + G+I ++R L++V + ++N+ QI + A Sbjct: 19 MSIIKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAI 78 Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 ++ IG + + + G+ + S K+ + K ++ +R Q K K+GEII Sbjct: 79 KIKKNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAK 138 Query: 146 VKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 V + N+ + N+ ++ ++E I E + G+ I V+ + + LSR Sbjct: 139 VDYIINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKD 198 Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264 F+ KL +E+PEI NG++ +K + R G R+K+A+ S + +IDP+G CVG++GS+++ Sbjct: 199 KNFLKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKN 258 Query: 265 VVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR 324 ++ E+ +E IDI+ +S + ++ ++ PA V + +D + V E++ AIG + Sbjct: 259 IIKEINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNK 318 Query: 325 GQNVRLASQLTGWTIDII 342 N+RLAS+LTG+ I I+ Sbjct: 319 KTNLRLASKLTGYKIYIL 336 >gi|325973212|ref|YP_004250276.1| transcription termination factor NusA [Mycoplasma suis str. Illinois] gi|325989656|ref|YP_004249355.1| antitermination factor NusA [Mycoplasma suis KI3806] gi|323574741|emb|CBZ40397.1| antitermination factor NusA [Mycoplasma suis] gi|323651814|gb|ADX97896.1| transcription termination factor NusA [Mycoplasma suis str. Illinois] Length = 421 Score = 251 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 186/383 (48%), Gaps = 32/383 (8%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + N + L+ ++ E S+++ + + +S + Y + S +++EI+ E I Sbjct: 1 MHINHKQFLEAITKISKEYSLEKSTISDFLKESFKYVFEREY-SDSLVKLEIDLENCKIE 59 Query: 62 LFRLLEVVEE-------VENYTCQISLKV-ARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 L++ L+VV E +E+ C I + + + +G S+P+ D V++ Sbjct: 60 LWKELKVVTEEYFYGEGMEDSECLIPVSKLPQRYQKKLKVGQYYSEPVNLEDLSTKIVKN 119 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV------EYGNVIVDL-------GN 160 + E + + ++ + GE+ G V+++ +IV L Sbjct: 120 ILFHFQKLTLETVNQKIHEKWISRKGEVFEGMVEKIFETKEKLPKEIIVSLIDPENEAHT 179 Query: 161 SDGVIRRDETISR---------ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 + G++ R + I ENL PG I +V G ++LSRT P + L Sbjct: 180 TKGIVYRSDLIQALSNDGYRLYENLVPGKIYNFEIKEVLENSAGCPIILSRTSPAIVKYL 239 Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 + E+++G+V + A++R G R+K+ V + +++IDPVG C+G +G+R++ + ++L + Sbjct: 240 MKKHISEVHDGLVTINAIARISGMRSKVLVSTKNNNIDPVGCCIGPKGNRLKVISSQLLN 299 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 E+ID+++W+ D +INA + + +E+ I +I + L LAIG+RG NV+L Sbjct: 300 ERIDVILWNSDPIKNIINAFSGTRILGYKISEEEENSITLITTIDNLLLAIGKRGTNVKL 359 Query: 331 ASQLTGWTIDIITEEEDSINRQK 353 S LTGW I + T +E R Sbjct: 360 VSLLTGWKIFLKTIQEAKAERIN 382 >gi|225550916|ref|ZP_03771865.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380070|gb|EEH02432.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 458 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 109/468 (23%), Positives = 206/468 (44%), Gaps = 41/468 (8%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ Sbjct: 4 SFKSKEFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINC 62 Query: 63 FRLLEVVE-------EVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 FR L VVE ++E + +I L AR + + IG + + DF + V Sbjct: 63 FRNLVVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQRISIDDFKSIEVG 122 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSD 162 ++ QK+ E R +K + ++I V +R E V V+L + Sbjct: 123 QIGSLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTL 182 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G + + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG Sbjct: 183 GYLSCKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNG 242 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +++K ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D Sbjct: 243 NIEIKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADD 302 Query: 283 SATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 F+ NA+ + +++ E+ IV KE L IGR G N+RL +++T W I Sbjct: 303 KRIFIANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNI 362 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ T E+ + N + F DE I + + +A I+ Sbjct: 363 DVKTIEQAF-----EENVVYEKF------DEKIYRSWN---IESINKKNVTNDEMLALID 408 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCSIPGIDS 445 +E E + L+ + + +++ L + G + Sbjct: 409 NMQDEKVDE-NEQVNHQLKQQEKQTIDSNNDDSENDDEQLEYLEGFED 455 >gi|269115299|ref|YP_003303062.1| transcription elongation protein NusA [Mycoplasma hominis] gi|268322924|emb|CAX37659.1| Transcription elongation protein NusA [Mycoplasma hominis ATCC 23114] Length = 546 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 113/516 (21%), Positives = 228/516 (44%), Gaps = 53/516 (10%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+ + ++ K ID+ V+ +++ K Y +D+ + E + ++ Sbjct: 23 KEIYKQIYNLSQIKKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHN 82 Query: 67 EVVEEVENYTC-----------QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +VV V + +I L A+ DP+++IG +S + F + Sbjct: 83 KVV--VGDPITSEEKDRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKIL 140 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISR- 173 Q ++ ER ++ +VG + V G V ++L + + + R Sbjct: 141 ANFSQDIKNLERKMTCEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQRI 200 Query: 174 -ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 L PGD + I +V+ E Q+++S + + KLF +E+PEI G++ + ++R Sbjct: 201 ISKLNPGDWIDVVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARI 260 Query: 233 PGSRAKLAVFSSD---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 PG RAK+++ S+ +++ +GA +G R+ + +L EKID+V++S D ++ N Sbjct: 261 PGERAKVSIKKSNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKN 320 Query: 290 ALRPAIVTKVVLDEDVGRI---EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 AL PA V ++ VIVP Q +LAIG++GQNV LAS+L +DI+++E+ Sbjct: 321 ALSPAKVIDLIEVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILSQEQ 380 Query: 347 DSINRQK---DFNERTQFFMQAINV----------DEIIAHLLVAEGFADVEELACVKIS 393 + + T+ ++ + + I + F E Sbjct: 381 ADERGIEYNFENGNITKEEIELLESGKKLHHSFKHPKTIGNKNATNKFNTFE-------- 432 Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL-CSIPGIDSKIKVALG 452 +I+ FDE+ A E++ +A + D ++++ + E+L ++ ++ + + Sbjct: 433 NSFNIDEFDEDLA-EMRRKA----QQNDNIFERQMFSNSLDEDLERTLSELNDDKENNVD 487 Query: 453 ENGI----KTMEDLAGCSVDDLLGWSENKGGNIEKF 484 EN + K+ ++L D+ + + ++ F Sbjct: 488 ENDLDPYSKSFDELNEQKNDEEEDYEKITATKMKDF 523 >gi|219558857|ref|ZP_03537933.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] Length = 194 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 84/174 (48%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E+ G+R++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ Sbjct: 1 GESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVARE 60 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL Sbjct: 61 AGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALS 120 Query: 293 PAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 PA V V V+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 121 PAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 174 >gi|218513202|ref|ZP_03510042.1| transcription elongation factor NusA [Rhizobium etli 8C-3] Length = 213 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 127/180 (70%), Positives = 158/180 (87%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I L RLLEVV++ E+Y+ QI Sbjct: 21 KVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIRLQRLLEVVDKAEDYSTQI 80 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QKVREAERDRQ+ EFKD+VG Sbjct: 81 PLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAERDRQFDEFKDRVG 140 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 EI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+L Sbjct: 141 EIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQIL 200 >gi|193216986|ref|YP_002000228.1| transcription elongation factor NusA [Mycoplasma arthritidis 158L3-1] gi|193002309|gb|ACF07524.1| transcription elongation factor NusA [Mycoplasma arthritidis 158L3-1] Length = 524 Score = 239 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 109/464 (23%), Positives = 219/464 (47%), Gaps = 36/464 (7%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-RL 65 E+ + + ++ K+++ + V+ + D+++K S Y +++ + E + + Sbjct: 13 KEIFKAINDLSKLKNLNTNEVIELFKDAVKKVIMS-YDEDAELEFVFDEENNEFIVINHT 71 Query: 66 LEVVEEV---ENYTC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VV++ E+ ++ L +A++ + G V+S+ + F + Q Sbjct: 72 KYVVQDPITAEDKDMLCRCIEVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQS 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE--- 174 Q +RE E+ + K+G+I+ V + +L + +R+ Sbjct: 132 FNQSIRELEKKVIVGVYSLKIGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTA 191 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+PGD + YI +V + QVL+S + + KL + EVPEI NG++ + ++R PG Sbjct: 192 NLQPGDSIDVYIDNVGDADKNVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPG 251 Query: 235 SRAKLAVFSSDS---SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 RAK+A+ +++ ++ VG+ +G GSR+ V+ +L+ E++D++ +S D TF+ NA+ Sbjct: 252 ERAKIAISANEKTPIGVEVVGSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAI 311 Query: 292 RPAIVTKVVLDEDVGRI-----EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 PA V +V +++ + V+VP + +LAIG+RGQNV LAS L +DI ++++ Sbjct: 312 SPAKVIDIVENKEKWQANYPAYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQDQ 371 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF--ADVEELACVKISEIASIEGFDEE 404 + + + + + +DE+ + F ++ A ++A E+ Sbjct: 372 ADLAKIE--YDINNGNITQAELDELAQGKRLQSQFRRRTRQDTASRDTIDMADF----EK 425 Query: 405 TAVEIQGRAREY------LEGIDITLQK-KIRELGVSEELCSIP 441 EI+ R Y L D++ + + EL S+ Sbjct: 426 EMEEIKARMTSYESFERQLFNQDVSNEDISLAFEKAQAELASLE 469 >gi|312601531|gb|ADQ90786.1| Transcription termination-antitermination factor nusA [Mycoplasma hyopneumoniae 168] Length = 614 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 22/365 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVI-VDLGNSDGVIRRDETISRE 174 QK+ E R+ Y ++ ++ TV ++ G + +D + S + Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMP-SHYASGQ 198 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 199 NLKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPG 258 Query: 235 SRAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA Sbjct: 259 ERCKVAIRRTEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNA 318 Query: 291 LRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + P+ V V + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 319 MSPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSA 378 Query: 348 SINRQ 352 ++ Sbjct: 379 LKDQN 383 >gi|71893935|ref|YP_279381.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae J] Length = 617 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 22/365 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 23 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 82 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 83 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 142 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVI-VDLGNSDGVIRRDETISRE 174 QK+ E R+ Y ++ ++ TV ++ G + +D + S + Sbjct: 143 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMP-SHYASGQ 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 202 NLKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPG 261 Query: 235 SRAKLAVFSSDS----SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA Sbjct: 262 ERCKVAIRRNEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNA 321 Query: 291 LRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + P+ V V + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 322 MSPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSA 381 Query: 348 SINRQ 352 ++ Sbjct: 382 LKDQN 386 >gi|144227706|gb|AAZ44670.2| N-utilization substance protein A [Mycoplasma hyopneumoniae J] Length = 614 Score = 233 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 22/365 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVI-VDLGNSDGVIRRDETISRE 174 QK+ E R+ Y ++ ++ TV ++ G + +D + S + Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMP-SHYASGQ 198 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 199 NLKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPG 258 Query: 235 SRAKLAVFSSDS----SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA Sbjct: 259 ERCKVAIRRNEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNA 318 Query: 291 LRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + P+ V V + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 319 MSPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSA 378 Query: 348 SINRQ 352 ++ Sbjct: 379 LKDQN 383 >gi|72080914|ref|YP_287972.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 7448] Length = 617 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 167/365 (45%), Gaps = 22/365 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 23 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 82 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 83 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 142 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVI-VDLGNSDGVIRRDETISRE 174 QK+ E R+ Y ++ ++ TV ++ G + +D + S + Sbjct: 143 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMP-SHYASGQ 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 202 NLKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPG 261 Query: 235 SRAKLAVFSSDS----SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA Sbjct: 262 ERCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNA 321 Query: 291 LRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + P+ V V + + R ++VP Q SLAIG+ G NV+L + LT + II Sbjct: 322 MSPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSA 381 Query: 348 SINRQ 352 ++ Sbjct: 382 LKDQN 386 >gi|144575534|gb|AAZ53949.2| N-utilization substance protein A [Mycoplasma hyopneumoniae 7448] Length = 614 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 167/365 (45%), Gaps = 22/365 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVI-VDLGNSDGVIRRDETISRE 174 QK+ E R+ Y ++ ++ TV ++ G + +D + S + Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMP-SHYASGQ 198 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 199 NLKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPG 258 Query: 235 SRAKLAVFSSDS----SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA Sbjct: 259 ERCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNA 318 Query: 291 LRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + P+ V V + + R ++VP Q SLAIG+ G NV+L + LT + II Sbjct: 319 MSPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSA 378 Query: 348 SINRQ 352 ++ Sbjct: 379 LKDQN 383 >gi|54020616|ref|YP_116111.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 232] gi|53987789|gb|AAV27990.1| transcription termination-antitermination factor nusA [Mycoplasma hyopneumoniae 232] Length = 614 Score = 232 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 166/365 (45%), Gaps = 22/365 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVI-VDLGNSDGVIRRDETISRE 174 QK+ E R+ Y ++ ++ TV ++ G + +D + S + Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMP-SHYASGQ 198 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 NL+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 199 NLKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPG 258 Query: 235 SRAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA Sbjct: 259 ERCKVAIRRTEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNA 318 Query: 291 LRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 + P+ V V + + R V+V Q SLAIG+ G NV+L + LT + II Sbjct: 319 MSPSKVICVKEFKIGHKLRRFIVVVTDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSA 378 Query: 348 SINRQ 352 ++ Sbjct: 379 LKDQN 383 >gi|297250843|ref|ZP_06865170.2| transcription termination/antitermination protein NusA [Neisseria polysaccharea ATCC 43768] gi|296837867|gb|EFH21805.1| transcription termination/antitermination protein NusA [Neisseria polysaccharea ATCC 43768] Length = 208 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 138/227 (60%), Gaps = 21/227 (9%) Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 AL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E Sbjct: 3 ALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADE 62 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE + Sbjct: 63 RNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDML 122 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 + RAR+ + + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD+ Sbjct: 123 RNRARDAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVDE 180 Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 L+ + G ++ +++I+ AR W ++K Sbjct: 181 LIEIT-----------------GVNEETAKAVILTAREH--WFTEDK 208 >gi|71894695|ref|YP_278803.1| transcription elongation factor NusA [Mycoplasma synoviae 53] Length = 561 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 173/371 (46%), Gaps = 17/371 (4%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 ++N + + ++ + K I D +++ + I +++ ++ E +I L Sbjct: 14 ASNSKKWFLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILL 73 Query: 63 F-RLLEVVEEVE----NYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 + EVVE+ E + IS L A++ + + +G ++S P+ F + + + Sbjct: 74 LNKNTEVVEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAM 133 Query: 115 KQVIIQKVREAERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS 172 + + E ++R + ++ +G +++ + E G + L + + ++ I Sbjct: 134 RNGFSAAIAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIK 193 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 L PG + ++ V + +G + ++ T P+ + + E+PEI NG + ++ + R Sbjct: 194 SVELNPGQKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRI 253 Query: 233 PGSRAKLAVF-----SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 PG R+K+ V S + D +GA G + R+ V L +EKID++ ++ + F+ Sbjct: 254 PGERSKVVVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFI 313 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NA+ P V VV + VIV E +SLAIG G NV LAS++T ID+++ E+ Sbjct: 314 RNAMSPCPVVDVV--KSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQA 371 Query: 348 SINRQKDFNER 358 + + Sbjct: 372 FQEKIYFQDNY 382 >gi|144575229|gb|AAZ44092.2| N-utilization substance protein A [Mycoplasma synoviae 53] Length = 560 Score = 228 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 173/371 (46%), Gaps = 17/371 (4%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 ++N + + ++ + K I D +++ + I +++ ++ E +I L Sbjct: 13 ASNSKKWFLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILL 72 Query: 63 F-RLLEVVEEVE----NYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 + EVVE+ E + IS L A++ + + +G ++S P+ F + + + Sbjct: 73 LNKNTEVVEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAM 132 Query: 115 KQVIIQKVREAERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS 172 + + E ++R + ++ +G +++ + E G + L + + ++ I Sbjct: 133 RNGFSAAIAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIK 192 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 L PG + ++ V + +G + ++ T P+ + + E+PEI NG + ++ + R Sbjct: 193 SVELNPGQKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRI 252 Query: 233 PGSRAKLAVF-----SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 PG R+K+ V S + D +GA G + R+ V L +EKID++ ++ + F+ Sbjct: 253 PGERSKVVVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFI 312 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NA+ P V VV + VIV E +SLAIG G NV LAS++T ID+++ E+ Sbjct: 313 RNAMSPCPVVDVV--KSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQA 370 Query: 348 SINRQKDFNER 358 + + Sbjct: 371 FQEKIYFQDNY 381 >gi|255030994|ref|ZP_05302945.1| transcription elongation factor NusA [Listeria monocytogenes LO28] Length = 179 Score = 226 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 104/179 (58%) Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSI 91 ++ A + + ++RV++N E G I + E VE+V + +IS++ A +P Sbjct: 1 EAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVY 60 Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D+ +I++G V+R + Sbjct: 61 QPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDS 120 Query: 152 GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 + V+LG + ++ ++E + E DR+K Y+ V + +GPQ+ +SRTHP + + Sbjct: 121 RFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKR 179 >gi|304373277|ref|YP_003856486.1| Transcription termination-antitermination factor nusA [Mycoplasma hyorhinis HUB-1] gi|304309468|gb|ADM21948.1| Transcription termination-antitermination factor nusA [Mycoplasma hyorhinis HUB-1] Length = 557 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 172/384 (44%), Gaps = 43/384 (11%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP----- 55 + N E+LQ ++ + ID + + ++ DSI + S + ++I + I+ Sbjct: 14 IKKFNFQEILQ---DISEFRKIDLNNIKDILQDSISRQIVSKLDSEAEIELVIDEQNPQE 70 Query: 56 -----ETGDISLFRL----LEVVEEVENYT-------------CQISLKVARDRDPSIDI 93 + G + + L V E + I L A++ +P+ + Sbjct: 71 FIVINKNGTVVTDQEFSDMLTVAPEFTHTDMSDKQTSFQSEKITFIPLSTAKEINPNAKV 130 Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT-VKRVEYG 152 P+ +F + Q QK+ E R Y ++ II T +K+ + G Sbjct: 131 DDTFDIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLKNSIIKATLIKKSQNG 190 Query: 153 NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 + G + + IS N+ + + +I DV Q+ Q++LS + + Sbjct: 191 FNYLLEGEIPAYMPKPN-ISNFNIALNTKEEVFIEDVLDNQKDSQIILSSKEGMILKEKL 249 Query: 213 HMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVGACVGMRGSRVQAVVT 267 E+PE+ GI+++ V+R+ G R+K++V + +D VG+ +G GSR+ + Sbjct: 250 KREIPEVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVGSLIGKNGSRIATINK 309 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG----RIEVIVPKEQLSLAIGR 323 E+ EKIDIV + P+ ++INAL PA V V ++E + V+VP + AIG+ Sbjct: 310 EILGEKIDIVRYDPNITKYIINALSPARV--VYIEEVKKSKGQKFLVVVPTSHQAKAIGK 367 Query: 324 RGQNVRLASQLTGWTIDIITEEED 347 NVRLA++LT IDI + ++ Sbjct: 368 NAINVRLANELTRTKIDIKSYKDY 391 >gi|330723850|gb|AEC46220.1| transcription elongation factor NusA [Mycoplasma hyorhinis MCLD] Length = 538 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 170/384 (44%), Gaps = 43/384 (11%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP----- 55 + N E+LQ ++ + ID + + ++ DSI + S + ++I + I+ Sbjct: 14 IKKFNFQEILQ---DISEFRKIDLNNIKDILQDSISRQIVSKLDSEAEIELVIDEQNPQE 70 Query: 56 -----ETGDISLFRL----LEVVEEVE-------------NYTCQISLKVARDRDPSIDI 93 + G + + L V E I L A++ +P+ + Sbjct: 71 FIVINKNGTVVTDQEFSDMLTVAPEFTHTDMSDKQTSFQSEKITFIPLSTAKEINPNAKV 130 Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT-VKRVEYG 152 P+ +F + Q QK+ E R Y ++ II T +K+ + G Sbjct: 131 DDTFDIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLKNSIIKATLIKKSQNG 190 Query: 153 NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 + G + + IS N+ + +I DV Q+ Q++LS + + Sbjct: 191 FNYLLEGEIPAYMPKPN-ISNFNIALNTEEEVFIEDVLDNQKDSQIILSSKEGMILKEKL 249 Query: 213 HMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVGACVGMRGSRVQAVVT 267 E+PE+ GI+++ V+R+ G R+K++V + +D VG+ +G GSR+ + Sbjct: 250 KREIPEVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVGSLIGKNGSRIATINK 309 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG----RIEVIVPKEQLSLAIGR 323 E+ EKIDIV + P+ ++INAL PA V V ++E + V+VP + AIG+ Sbjct: 310 EILGEKIDIVRYDPNITKYIINALSPARV--VYIEEVKKSKGQKFLVVVPTSHQAKAIGK 367 Query: 324 RGQNVRLASQLTGWTIDIITEEED 347 NVRLA++LT IDI + ++ Sbjct: 368 NAINVRLANELTRTKIDIKSYKDY 391 >gi|321310946|ref|YP_004193275.1| transcription termination factor N-utilization substance protein A [Mycoplasma haemofelis str. Langford 1] gi|319802790|emb|CBY93436.1| transcription termination factor N-utilization substance protein A [Mycoplasma haemofelis str. Langford 1] Length = 432 Score = 220 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 171/399 (42%), Gaps = 38/399 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL + AV + + + V ++ D+ + Y I V+++ + I ++R L V Sbjct: 11 LLSLVSAVGEKYDLSPETVARLLEDTFRSVFLKEYPDNI-IDVDVDLKKAKIEIWRHLRV 69 Query: 69 VEEV-------ENYTCQI------SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 V + E+ I SL S +G V + F + Sbjct: 70 VTDDYYNGEGNEDDETLIPVSKLASLPNTSKNPSSPKVGDTVFQEVDIESFDDKIANNI- 128 Query: 116 QVIIQKVREAERDR-QYLEFKDKVGEIISGTVK-----RVEY--GNVIVDLGN-----SD 162 Q +K+ E+E R ++ G+++ G ++ R + +IV L + Sbjct: 129 QFYFKKLTESEVSRSICQKWTPFHGKVVEGVIEEIIENRDDRTIKKIIVSLEAPDKTIAK 188 Query: 163 GVIRRDETI----SR-----ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 GVI R + + ENL G+ Y+ ++ + LSRT + + Sbjct: 189 GVIFRSDLVWIDGPNGTRIYENLVLGNTYLFYVKEISEVNVHLPIFLSRTDSEITKHVMA 248 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 + EI G V++KA++R G ++K+ V S+D +ID VG C+G +G R++ + EL +EK Sbjct: 249 KHISEISEGKVEIKAIARIAGFKSKVLVHSNDPNIDAVGCCIGPKGERLKVISRELLNEK 308 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 ID+++W+ D VIN+ + L ED I ++ + L IG+RG N +L Sbjct: 309 IDVILWNEDPVQNVINSFVTGKILGYRL-EDENEITLVATLDNLLSCIGKRGSNTKLVYM 367 Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 LTGW I++ T +E F + + + I Sbjct: 368 LTGWKINLKTIQEAKDEGIDYVAIDDDKFTNSNKISDRI 406 >gi|319776808|ref|YP_004136459.1| n-utilization substance protein a [Mycoplasma fermentans M64] gi|318037883|gb|ADV34082.1| N-utilization substance protein A [Mycoplasma fermentans M64] Length = 538 Score = 220 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 81/360 (22%), Positives = 156/360 (43%), Gaps = 22/360 (6%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE- 70 + EK + + V+ + ++ + + ++I E++ E ++ +F V Sbjct: 23 LIGYFEKEK-LPIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 71 ------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 ++EN + K A+ R P + + + + +++ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ + Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 >gi|293363915|ref|ZP_06610651.1| putative transcription termination factor NusA [Mycoplasma alligatoris A21JP2] gi|292552405|gb|EFF41179.1| putative transcription termination factor NusA [Mycoplasma alligatoris A21JP2] Length = 564 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 164/365 (44%), Gaps = 30/365 (8%) Query: 4 ANRLELLQIADAVAYE------KSIDRDVVLS-VMADSIQKAARSLYGTMSDIRVEINPE 56 N L Q+AD +A E + ID + +++ + +S + + VE + E Sbjct: 28 KNNLTAQQVADMIADETTKAINRDIDPEAIITFTVDESSESVFIKNTNA---VVVEDDFE 84 Query: 57 -TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +G+ + + + A+ + + + ++ + + + Sbjct: 85 FSGETDV-----------QHISFVPYSKAKKVNKEVHVDDIIEWEIDFEIVTEKCKTAIR 133 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETIS 172 IQ+++ E+ + ++ +G I + N+ + G + + + Sbjct: 134 NGFIQQLKANEKAEIFKKYHQLIGTKIKAKILSRNKDGSYNLAFEDGVT-AFLPFSNINT 192 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 R L+ G + YI V E + QV +S PQ + L EVPEI G+V++ + R Sbjct: 193 RIELKHGVLIDVYIETVSEENKLSQVQVSTDSPQMVYDLLKNEVPEIAQGLVEIMNIQRA 252 Query: 233 PGSRAKLAVF--SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 PG R+K+AV S +S +DP+ + +G+ GSR+ + +L EKID++++S + ++ NA Sbjct: 253 PGIRSKIAVRKTSVESEVDPISSVIGVNGSRINEISRKLGGEKIDVILYSEEITEYIKNA 312 Query: 291 LRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 L PA + VV ++ D ++ + + +A+G+ NV LA +++G I++I E Sbjct: 313 LSPARIVDVVKNKAMDNYYYAIVNSETDMYVAMGKGVVNVNLAKKISGCRIELIKAAEAV 372 Query: 349 INRQK 353 + Sbjct: 373 EKGLE 377 >gi|308189651|ref|YP_003922582.1| N utilization substance protein A [Mycoplasma fermentans JER] gi|307624393|gb|ADN68698.1| N utilization substance protein A [Mycoplasma fermentans JER] Length = 538 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 155/360 (43%), Gaps = 22/360 (6%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE- 70 + EK + + V+ + ++ + + ++I E++ E ++ +F V Sbjct: 23 LIGYFEKEK-LPIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 71 ------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 ++EN + K A+ R + + + + +++ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMSKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ + Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 >gi|238809615|dbj|BAH69405.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 538 Score = 217 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 81/360 (22%), Positives = 156/360 (43%), Gaps = 22/360 (6%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE- 70 + EK + + V+ + ++ + + ++I E++ E ++ +F V Sbjct: 23 LIGYFEKEK-LHIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 71 ------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 ++EN + K A+ R P + + + + +++ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ + Sbjct: 322 SPIQAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 >gi|240047659|ref|YP_002961047.1| transcription elongation factor NusA [Mycoplasma conjunctivae HRC/581] gi|239985231|emb|CAT05244.1| N-utilization substance protein A [Mycoplasma conjunctivae] Length = 623 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 164/373 (43%), Gaps = 25/373 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-RLLE 67 +L+ +A + D+VL + SI+K +++ +E + + ++ E Sbjct: 20 ILESLKEIAQQNQTTIDIVLETFSKSIEKVINKKIDPEAELELETDFDKFIFKVYNINGE 79 Query: 68 VVEE-----------VENYTCQISLKVARDRD----PSIDIGGVVSDPLPPMDFGRVAVQ 112 +VE+ E IS+ A + + +G V + F + Q Sbjct: 80 IVEDTYFDNLDDLAKHEASFSFISISDAIAKKIAKPEDLQVGNRVKIEIDITTFDKSIFQ 139 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGVIRRDETI 171 SA Q Q E R R Y ++ +I + ++ G + + + Sbjct: 140 SAIQNFKQTNSEINRQRIYDKYLPLKNTVILAKITNKIHSGYIFELVEDKVAAFMPSHYS 199 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 + L+ GD ++ I DV + + Q+++S Q + +PE+ +++ +++R Sbjct: 200 IGQKLKVGDILEVVIEDVNKSSKQSQIIVSSKSIQLVKNKIINAIPELQTNNLEIVSIAR 259 Query: 232 DPGSRAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 PG + K+AV ++ I +GA +G +G R++++ +L E+I+IV + + TFV Sbjct: 260 IPGEKCKVAVKKTNLPGSDHISELGAIIGEKGVRIESISQDLDGEQIEIVKYDENILTFV 319 Query: 288 INALRPAIVTKV---VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW-TIDIIT 343 NA+ PA V V ++ V+VP Q +LAIG++G NV+LA+ LT ++II Sbjct: 320 ANAIAPARVVCVKEFKINNKNKHYTVVVPDFQHTLAIGKKGSNVQLATDLTRIKKLEIIP 379 Query: 344 EEEDSINRQKDFN 356 + + + Sbjct: 380 YSRALKDDKFEIE 392 >gi|261886077|ref|ZP_06010116.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 200 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 109/173 (63%), Gaps = 3/173 (1%) Query: 168 DETISRENLRPGDRVKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 I E + G+ VK+ I VR +++ G +V LSRT P+F+ L EVPEI +G V + Sbjct: 2 KNRIKNEKFKVGNVVKAVIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVII 61 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 + +R PG +AK+A+FS+ +ID VGA VG++G R+ AV +EL E ID + +S + A F Sbjct: 62 QNSARIPGKKAKIALFSTTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIF 121 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V AL PAIV+ V +D+ + V + EQ S AIG G N+RLAS L+G+ I Sbjct: 122 VARALAPAIVSSVKIDD--KKAIVSLVPEQKSKAIGVSGINIRLASMLSGFEI 172 >gi|294155314|ref|YP_003559698.1| transcription termination factor NusA [Mycoplasma crocodyli MP145] gi|291600250|gb|ADE19746.1| transcription termination factor NusA [Mycoplasma crocodyli MP145] Length = 566 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 166/372 (44%), Gaps = 34/372 (9%) Query: 5 NRLELLQIADAVAYE--KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 N L QIAD +A E K+I+RD+ + + + ++ IN Sbjct: 30 NNLSTQQIADIIADETTKAINRDIDPEAIINFVV-------DEEREVVSIINTNA----- 77 Query: 63 FRLLEVVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 VVE+ + + + A+ S++I + + F + Sbjct: 78 ----TVVEDEFEFNGDQDVQKISFVPISKAKKVKKSVEIDDAIDWEIDFEIFNEKTKTAI 133 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV---IRRDETI 171 K IQ+++ E+ Y ++ +GE + + +LG DGV + Sbjct: 134 KNGFIQQLKANEKAAIYNKYSKLIGEKLKAKILSKNKDGSY-NLGLEDGVTAFLPYANIN 192 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 + NL PG + Y+ +V E + QV +S PQ + L + EVPEI G++ V ++ R Sbjct: 193 QKLNLNPGLFIDVYVDNVSEENKLSQVQVSTDSPQAIYDLLNKEVPEIAQGLIDVVSIQR 252 Query: 232 DPGSRAKLAVFSSDS--SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 PG R+K+AV S+ S+DP+ + +G GSR+ + L EK+D++++S FV N Sbjct: 253 VPGMRSKIAVKKSNPADSLDPISSIIGYNGSRINEISNALGGEKVDVILYSDVKEEFVKN 312 Query: 290 ALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 AL PA + VV + D ++ + +A+GR NV LA +LTG I+++ E Sbjct: 313 ALLPAKIIDVVKNNGADNYYFAIVASDSDMYVAMGRGVVNVNLAKKLTGTRIELLKVSEA 372 Query: 348 SINRQKDFNERT 359 + +++ Sbjct: 373 IAKGIEFKKQQS 384 >gi|313678838|ref|YP_004056578.1| transcription termination factor nusA [Mycoplasma bovis PG45] gi|312950148|gb|ADR24743.1| putative transcription termination factor nusA [Mycoplasma bovis PG45] Length = 544 Score = 210 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 170/386 (44%), Gaps = 39/386 (10%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 EK ID ++ S+ ++ + + + ++I EI+ + ++ ++ +V VE+ Sbjct: 25 EKEK-IDLSILASIFSEEVTRIVQKNIDPEANIVFEIDEDNKEVHVYNTEAIV--VEDSE 81 Query: 77 CQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAK 115 + + L A+ I ++ + + + + + Sbjct: 82 FESVSDAEKVSLMLYNVPLSDAKKVKSDAQIDDLIKIEVDLLALSKSSNPVVQKTPKIIE 141 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGT-VKRVEYG--NVIVDLGNSDGVIRRDETIS 172 I+Q +++ ++ Y ++ +K+GE + + + G NV + + + + Sbjct: 142 SSILQAIKKLQKSIVYTKYLEKIGETVKVMFISKNTKGSWNVQIVDDGVMAHLPANYVSA 201 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 + + PG I V +E + Q+ +S P+ + K+ + +PEI +G++++ V R Sbjct: 202 KRVINPGSYGDVVIERVEKETKLSQITVSLDSPKLIEKILYNNIPEINSGLIEIVNVQRI 261 Query: 233 PGSRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPD 282 PG R K AVF + + +D GA +G SR+ +++EL EK D++V + D Sbjct: 262 PGERTK-AVFRATPGNEHLDVYGAIIGHDSSRINLIISELNFGVNQADMEKFDVIVHTND 320 Query: 283 SATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 F+ + P V +V +E VI K LS AIG++G N LAS+++ +DI Sbjct: 321 KKEFIRRCMLPGQVLDIVPKNESQNTFYVITIKAALSAAIGKKGANTMLASKVSHCNLDI 380 Query: 342 ITEEEDSINRQKDFNERTQFFMQAIN 367 IT EE + R +++N Sbjct: 381 ITVEEAMQKNISFDDSRIAEVEESLN 406 >gi|297519524|ref|ZP_06937910.1| transcription elongation factor NusA [Escherichia coli OP50] Length = 178 Score = 207 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 >gi|15828674|ref|NP_326034.1| transcription elongation factor NusA [Mycoplasma pulmonis UAB CTIP] gi|14089616|emb|CAC13376.1| N-UTILIZATION SUBSTANCE PROTEIN A [Mycoplasma pulmonis] Length = 550 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 72/374 (19%), Positives = 162/374 (43%), Gaps = 24/374 (6%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + S ++ + ++ +K + V + ++ + ++ + +D+ + + E ++ Sbjct: 22 LKSNKTIDFFLSLENLSRDKKLKISTVKQIFQEAFFQVIKNDFDPDADLEIVYDDEKKEV 81 Query: 61 SLFRLLEVV------EEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108 + + +V E ++Y+ + + L AR + IG +V + + Sbjct: 82 TFYNNNAIVIEDALEEADDDYSAEEMLVSFVRLSDARKEKSDVQIGDIVKKQIKHDELKL 141 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV---IVDLGNSDGVI 165 V+ + Q + + + + K+G+ I ++ + +V + + Sbjct: 142 NEVKKIFSIFQQNLAKEAKQSVLDFYSSKIGQKIQVKIEEFKNRGFFGSVVGDMETKVFL 201 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQ---VLLSRTHPQFMVKLFHMEVPEIYNG 222 E + G ++ Y + +E + +++S P ++ + EI NG Sbjct: 202 PNKEINKNSKIALGKKIDVYFIEFAKEFQNKSETLLIVSLNSPLEVINVLKETFEEIANG 261 Query: 223 IVQVKAVSRDPGSRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 + +K ++R G R K+AV S ++ +G +G G R + + +L +EKID V++ Sbjct: 262 SIIIKKIARKAGIRTKIAVEKSHLASEGLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIY 321 Query: 280 SPDSATFVINALRPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 D F++ +L+PA V VV + + V+VP Q+S+AIG+ G N L+S+L+ Sbjct: 322 KEDLQEFIVESLKPANVISIERVVPETHIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQ 381 Query: 337 WTIDIITEEEDSIN 350 I+I T ++ Sbjct: 382 SRINIETLDKAKEK 395 >gi|254671946|emb|CBA04328.1| N utilization substance protein A [Neisseria meningitidis alpha275] Length = 186 Score = 203 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 121/207 (58%), Gaps = 21/207 (10%) Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 +IV + QL+LAIGR GQNVRLAS LTGW ++I+T E + + FM +NVD Sbjct: 1 MIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVD 60 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 E A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ Sbjct: 61 EETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLG 120 Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 121 E--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT--------------- 163 Query: 490 SLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 164 --GVNEETAKAVILTAREH--WFTEDK 186 >gi|13937007|gb|AAK50007.1|AF363237_1 transcription termination-antitermination factor [Homo sapiens] Length = 172 Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 103/167 (61%), Gaps = 1/167 (0%) Query: 149 VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 + ++VD N++ ++ + E I + R G+ +++ I V E P+++LSRT P F+ Sbjct: 4 WKREVLLVDDDNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSPTFL 63 Query: 209 VKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTE 268 +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG+RGSRV +V E Sbjct: 64 ERLLEQEVPEIADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGIVRE 123 Query: 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 L +E ID+V W+ ++ + + L+ ++ + DE+ ++PK Sbjct: 124 LCNENIDVVHWTANT-KLLSSVLKSCPISSIAPDEETECDVYMLPKS 169 >gi|148377961|ref|YP_001256837.1| transcription elongation factor NusA [Mycoplasma agalactiae PG2] gi|148292007|emb|CAL59399.1| Transcription elongation protein NusA [Mycoplasma agalactiae PG2] Length = 544 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 170/384 (44%), Gaps = 35/384 (9%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-EVVEEVE-N 74 EK ++ V+ + ++ + + + ++I EI+ E ++ ++ VV++ E + Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83 Query: 75 YTCQ----------ISLKVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 + + L VA+ ++ + + + + + + Sbjct: 84 DLSEADKVSLMLYNVPLSVAKKVKNDANVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I+Q +++ ++ Y ++ +K+GE + T + NV + + + ++ Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISMNSKGSWNVQIVDDGVIAHLPANYVSAKR 203 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 + PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V R PG Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263 Query: 235 SRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDSA 284 R K AVF + + +D GA +G SR+ +++E+ EK D++V++ D Sbjct: 264 ERTK-AVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYTSDKK 322 Query: 285 TFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ + P V +V +E VI K LS AIG++G N LAS+++ +DIIT Sbjct: 323 EFIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIIT 382 Query: 344 EEEDSINRQKDFNERTQFFMQAIN 367 EE + +++N Sbjct: 383 VEEAKQKNIPFDESKIAEVEESLN 406 >gi|291320687|ref|YP_003515952.1| transcription elongation protein NusA [Mycoplasma agalactiae] gi|290753023|emb|CBH40999.1| Transcription elongation protein NusA [Mycoplasma agalactiae] Length = 544 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 170/384 (44%), Gaps = 35/384 (9%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-EVVEEVENY 75 EK ++ V+ + ++ + + + ++I EI+ E ++ ++ VV++ E Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83 Query: 76 TCQIS-----------LKVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 S L VA+ +++ + + + + + + Sbjct: 84 DLSESDKVSLMLYNVPLSVAKKVKSDVNVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I+Q +++ ++ Y ++ +K+GE + T NV + + + ++ Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISKNSKGSWNVQIVDDGVIAHLPANYVSAKR 203 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 + PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V R PG Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263 Query: 235 SRAKLAVFSS---DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDSA 284 R K AVF++ + +D GA +G SR+ +++E+ EK D++V++ D Sbjct: 264 ERTK-AVFNASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADMEKFDVIVYTSDKK 322 Query: 285 TFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ + P V +V +E VI K LS AIG++G N LAS+++ +DIIT Sbjct: 323 EFIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIIT 382 Query: 344 EEEDSINRQKDFNERTQFFMQAIN 367 EE + + +++N Sbjct: 383 VEEAKLKNILFDESKIAEVEESLN 406 >gi|254700793|ref|ZP_05162621.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] Length = 181 Score = 197 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 82/168 (48%), Positives = 114/168 (67%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ER+ FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RARE Sbjct: 1 AERSNLFMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRARE 60 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 YLE I+ + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E Sbjct: 61 YLERIEAEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRE 120 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 K G+ G L+ + E M++ AR K GWI +E++A Sbjct: 121 RKDGDTINHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 168 >gi|222871752|gb|EEF08883.1| predicted protein [Populus trichocarpa] Length = 274 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 113/164 (68%), Gaps = 2/164 (1%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM ++ Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ ++K Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + E VS++L S+ G+ ++ L E I T +DLA +VD+L Sbjct: 121 VEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELA 162 >gi|215428279|ref|ZP_03426198.1| transcription elongation factor NusA [Mycobacterium tuberculosis T92] gi|289571028|ref|ZP_06451255.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] gi|289544782|gb|EFD48430.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] Length = 159 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 71/139 (51%), Positives = 96/139 (69%), Gaps = 1/139 (0%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 M KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ + ++ GAC+G G RV+ V++ Sbjct: 1 MRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMS 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQ 326 EL EKIDI+ + D A FV NAL PA V V V+D+ V+VP QLSLAIG+ GQ Sbjct: 61 ELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQ 120 Query: 327 NVRLASQLTGWTIDIITEE 345 N RLA++LTGW IDI + Sbjct: 121 NARLAARLTGWRIDIRGDA 139 >gi|261751302|ref|ZP_05995011.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] gi|261741055|gb|EEY28981.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] Length = 174 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 110/161 (68%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 1 MEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEA 60 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 61 EQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTI 120 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 121 NHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 161 >gi|258615950|ref|ZP_05713720.1| transcription elongation factor NusA [Enterococcus faecium DO] Length = 171 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 101/161 (62%), Gaps = 4/161 (2%) Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++ +++R+ G R+K+AV S+D +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A Sbjct: 1 EIVSIAREAGDRSKVAVRSNDPNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPA 60 Query: 285 TFVINALRPAIVTKVVLDEDVGRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ NAL PA V V+ DE + V+VP QLSLAIG+RGQN RLA++LT IDI + Sbjct: 61 VFIANALNPAQVMDVIFDETNPKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKS 120 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV 384 E + + + ++ + ++ + I+ L + + + Sbjct: 121 ESDMTEFYENQEQQKE---TEELHDEAIVQSDLTDDEYETI 158 >gi|254434624|ref|ZP_05048132.1| transcription termination factor NusA, C-terminal duplication domain protein [Nitrosococcus oceani AFC27] gi|207090957|gb|EDZ68228.1| transcription termination factor NusA, C-terminal duplication domain protein [Nitrosococcus oceani AFC27] Length = 199 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 19/216 (8%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q FM+ ++ Sbjct: 1 MDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFMEQLD 60 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L I ++ Sbjct: 61 VDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIANEET 120 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 I + + +EL + ID + AL GI T E+LA +VD+L+ Sbjct: 121 IETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIE------------- 167 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G +++ +I+ AR W EK +E + Sbjct: 168 ----GMNREKAARLIMAARES--WFVSEKQDEETEE 197 >gi|255077143|ref|XP_002502222.1| predicted protein [Micromonas sp. RCC299] gi|226517487|gb|ACO63480.1| predicted protein [Micromonas sp. RCC299] Length = 897 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 147/363 (40%), Gaps = 54/363 (14%) Query: 28 LSVMADSIQKAARS-LYGT--MSDIR-----VEINPETGDISLFRLLEVVEEVENYTCQI 79 L ++ +I +A R Y D R V+IN G +++ Sbjct: 329 LEAVSRAIDRAYRKLRYSAFAEMDPRGRDVCVDINVAEGTVAVLAQR------------- 375 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDF------GRVAVQSAKQVIIQKVREAERDRQYLE 133 I GG V D R ++ + +++ E Sbjct: 376 -----------IGRGGTVEWETDDTDAFLEAYGKRHMIRKIAHMYTEELNEQVSAVAADS 424 Query: 134 FKDKVGEIISGTVKRV-EYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++ K G+++ TV G ++ L + + + +E+I + G+RV + + +V Sbjct: 425 YRAKRGQMVECTVVAEGRRGEYLLRLDDGAMACLPEEESIPGKKYSQGERVCALVMEVED 484 Query: 192 EQ----RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R V++S + ++ EVPE+ G V +K+V+R G +K+AV + + Sbjct: 485 RTWAADRRAPVIVSTAIAGLLAEVLAAEVPEVARGDVVIKSVARVSGKMSKVAVARQEGA 544 Query: 248 ---IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--- 301 DPV ACVG+ SR++A+ L E I+ WS + V AL PA V +VV Sbjct: 545 EKVFDPVLACVGVENSRLRAIRERLGGEVCQILTWSDNREDMVAEALFPAAVHRVVKAEE 604 Query: 302 DEDVGRI----EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 D+ GR V + + AIG G NV+LA+ LTG I I EE ++ Sbjct: 605 DDMDGRALDKFIAYVSRFDEAKAIGAGGVNVKLAAALTGCFILIERHEEGGGAGGGWGDQ 664 Query: 358 RTQ 360 R Sbjct: 665 RAN 667 >gi|213022854|ref|ZP_03337301.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 165 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 96/153 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 ER +F+D+ GEI++G VK+V N+ +++ Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEI 154 >gi|213421302|ref|ZP_03354368.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 179 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 93/149 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 ER +F+D+ GEI++G VK+V N+ Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNI 150 >gi|153812998|ref|ZP_01965666.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174] gi|149830945|gb|EDM86035.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174] Length = 162 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 87/144 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++ Sbjct: 2 NKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV E V++ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 REVKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV 149 ER Y ++ E+++G V+RV Sbjct: 122 ERKVLYDQYYGMEKEVVTGIVQRV 145 >gi|303279869|ref|XP_003059227.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459063|gb|EEH56359.1| predicted protein [Micromonas pusilla CCMP1545] Length = 511 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 20/234 (8%) Query: 132 LEFKDKVGEIISGTVKRV-EYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDV 189 ++ + GE++ TV G ++ L + + + +E I + GDRV + + V Sbjct: 23 NSYRVRTGEMVEATVVSEGRRGEYLLKLDDGAFACLPAEEGIPEKRYGQGDRVSALVLGV 82 Query: 190 RREQ----RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + R V++S + ++ EVPE+ G V +++V+R G +K+AV D Sbjct: 83 EDQTWAADRRAPVVVSTAIAGLLAEVLKKEVPEVATGDVVIRSVARVSGKMSKVAVSRRD 142 Query: 246 SSI---DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--- 299 ++ DPV ACVG SR+ A+ L E I+ WS V AL PA V +V Sbjct: 143 GAVGTWDPVLACVGENNSRMLAIRERLGGETCQILTWSDVQEEMVAEALFPAQVVRVDKA 202 Query: 300 --VLDEDVG------RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 DE G + V + + AIG G NV+LA+ L G I I E Sbjct: 203 LEEADEHGGKEFAMDKYVAYVNQFDEAKAIGAGGINVKLAAALCGCFILIERYE 256 >gi|145346768|ref|XP_001417855.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578083|gb|ABO96148.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 710 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 56/367 (15%) Query: 13 ADAVAYEK-SIDRDV--VLSVMADSI-----------QKAARSLYGTMSDIRVEINPETG 58 A+A EK + DV L +A +I + D+ V+I+ + G Sbjct: 216 LRALAKEKEGYEADVGLHLEAIARAIDRGYRDMRGSALTVLQKEVRARIDVSVDIDVQRG 275 Query: 59 DISLFRLLE----VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 ++ + VE + T + V R ++ + +S+ + R+A Sbjct: 276 RFAVLVQVVGRGGTVEREYDDTKFFTFNV-RRQNRMRTLIRYMSEEIKT-GVARLAT--- 330 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVK-RVEYGNVIVDL-GNSDGVIRRDETIS 172 +F ++G ++ GT++ R E G+ ++D+ G + GVI +E + Sbjct: 331 -----------------EDFVGQIGNVVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQLL 373 Query: 173 REN---LRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 N L+ GD + ++ DV + + V+LS T P + + EVPE+ G ++ Sbjct: 374 TYNDLPLKQGDELSCFVLDVDQNLFTGREQTPVVLSMTIPALVGAIIREEVPEVARGEIE 433 Query: 226 VKAVSRDPGSRAKLAV---FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +K+++R G K+AV S S + V C+G S ++ + E + + WS D Sbjct: 434 IKSIARMAGKVTKVAVALREGSTSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWSDD 493 Query: 283 SATFVINALRPAIVTKVVLD----EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 A + ++L PA V +V + V + L AIG G NV+L + LT Sbjct: 494 PAELIKSSLFPAEVLRVEESFPDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTNAF 553 Query: 339 IDIITEE 345 I I +E Sbjct: 554 IVIEVDE 560 >gi|308804463|ref|XP_003079544.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri] gi|116057999|emb|CAL54202.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri] Length = 615 Score = 166 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 88/357 (24%), Positives = 148/357 (41%), Gaps = 56/357 (15%) Query: 13 ADAVAYEKS---IDRDVVLSVMADSIQKAARSLYGTMS------------DIRVEINPET 57 A+A +KS D + L +A +I + + G+ D+ V+I+ E Sbjct: 216 LRALAKDKSGYEADTGMHLEAIARAITTMYKEIPGSALRLIQRERRDARLDVSVDIDVER 275 Query: 58 GDI----SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 G +F VE + T + + R ++ + +S+ + R+A Sbjct: 276 GRFAVLVQVFGRSGTVEREYDDTKFFTFNI-RRQNRMRTLIRYMSEEMKS-GVARMAT-- 331 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK-RVEYGNVIVDL-GNSDGVIRRDETI 171 + +++G + GT + R E G+ +VD+ + GVI +E + Sbjct: 332 ------------------ENYVEQIGSLCVGTTRFRSEDGSWMVDIADGAAGVIPPEEQL 373 Query: 172 SREN---LRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 N L+ GD V Y+ DV + + V+LS T P + + EVPEI G V Sbjct: 374 QLFNDRQLKQGDEVSCYVLDVDQNLFTGREQTPVVLSMTIPAVVAAIIRDEVPEIAKGDV 433 Query: 225 QVKAVSRDPGSRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 ++KA++R G K+AV S + + CVG+ R++ + E + + WS D Sbjct: 434 EIKAIARIAGKITKVAVAPVPGSSIWNTIDVCVGVDQVRLKRIRERAGGEVVHFINWSDD 493 Query: 283 SATFVINALRPAIVTKVVLDEDVG----RIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 + V AL PA V V G + V + + AIG G NV+L + LT Sbjct: 494 PSEVVKAALFPADVKSVEKSFPDGSQRPKFTAYVSEFDVKRAIGTNGNNVKLCAALT 550 >gi|118795363|ref|XP_561027.4| Anopheles gambiae str. PEST AGAP012738-PA [Anopheles gambiae str. PEST] gi|116133283|gb|EAL42227.2| AGAP012738-PA [Anopheles gambiae str. PEST] Length = 129 Score = 160 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 81/122 (66%), Gaps = 1/122 (0%) Query: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 +++D ++ ++ ++ I + R GD V++ I V + + PQ+++SRT P+F+ K Sbjct: 6 KHVILLDDEGNEFILPKENQIPSDFFRKGDSVRAVIESVDKGSK-PQIIVSRTAPKFLEK 64 Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270 L +E+PEI +G + +K V R PG +AK+AV + D IDPVGACVG++GSR+ VV ELR Sbjct: 65 LLELEIPEIQDGTIILKKVVRIPGEKAKIAVDAYDDRIDPVGACVGVKGSRIHGVVRELR 124 Query: 271 DE 272 +E Sbjct: 125 NE 126 >gi|169245954|gb|ACA50975.1| nucleic acid binding protein [Mycobacterium marinum DL240490] Length = 182 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQ 263 P + VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ Sbjct: 30 SPNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSCVAGINPVSVCIGWGGLRIA 89 Query: 264 AVVTELRDEKIDIVVWSPDSATFVINALR-P--AIVTKVVLDEDVGRIEVIVPKEQLSLA 320 V L E+I +V + D AT+VINAL P +E RI V V Sbjct: 90 DVEKGLGGERIHVVAYHVDPATYVINALGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRT 149 Query: 321 IGRRGQNVRLASQLTGWTIDIITEE 345 +G+ GQNVRLAS+LTG I+I+ E+ Sbjct: 150 VGKAGQNVRLASKLTGQKIEILVEK 174 >gi|213021473|ref|ZP_03335920.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 156 Score = 156 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 18/173 (10%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E+ I+G D Sbjct: 1 TVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLD 60 Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDL 462 E T ++ RA+ L + + + + +++L ++ G+D + L G+ T+EDL Sbjct: 61 EPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDL 120 Query: 463 AGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 A +DDL G ++ +I+ AR + W E Sbjct: 121 ADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFGDE 155 >gi|56807387|ref|ZP_00365366.1| COG0195: Transcription elongation factor [Streptococcus pyogenes M49 591] Length = 154 Score = 156 bits (395), Expect = 8e-36, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 87/153 (56%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + Sbjct: 2 SKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R Sbjct: 62 REVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 R+ + E+K+ GEI++GTV+R + + V+L Sbjct: 122 MREVMFNEYKEHEGEIMTGTVERFDQRFIYVNL 154 >gi|56808097|ref|ZP_00365889.1| COG0195: Transcription elongation factor [Streptococcus pyogenes M49 591] Length = 164 Score = 155 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 15/143 (10%) Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR--------------D 271 + +VSR+ G R K+AV S + ++D +G VG GS ++ V+++ + Sbjct: 1 MMSVSREAGDRTKVAVRSHNPNVDAIGTMVGRGGSNIKKVISKFHPKRVDAKTGLEIPVE 60 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 E ID++ W D A F+ NA+ PA V V+ D ED+ R V+VP +LSLAIGRRGQNVRL Sbjct: 61 ENIDVIQWVDDPAEFIYNAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRL 120 Query: 331 ASQLTGWTIDIITEEEDSINRQK 353 A+ LTG+ IDI + E + Sbjct: 121 AAHLTGYRIDIKSASEYDRLEAE 143 >gi|209418048|ref|YP_002274077.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT] gi|169409180|gb|ACA57586.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT] Length = 184 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 5/147 (3%) Query: 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQ 263 P + VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ Sbjct: 30 SPNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIA 89 Query: 264 AVVTELRDEKIDIVVWSPDSATFVINALR-P----AIVTKVVLDEDVGRIEVIVPKEQLS 318 V L E+I +V + D AT+VINAL P +E RI V V Sbjct: 90 DVEKGLGGERIHVVAYHVDPATYVINALGCPGTGTGTGAAAAAEERSRRIRVRVEAHDYP 149 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEE 345 +G+ GQNVRLAS+LTG I+I+ E+ Sbjct: 150 RTVGKAGQNVRLASKLTGQKIEILVEK 176 >gi|300508327|pdb|2KWP|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli Nusa Length = 129 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 47/126 (37%), Positives = 76/126 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQY 131 ER Sbjct: 122 ERAMLV 127 >gi|12240026|gb|AAG49545.1|AF261103_1 NusA protein [Myxococcus xanthus DK 1622] Length = 254 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 19/197 (9%) Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI Sbjct: 1 DPARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDI 60 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +E + ++F R+ V+E++ L A GF ++A +A + G Sbjct: 61 NSES--RVRELREFANRS--LGSLPGVNEMLVETLYAHGFRQARDIAEANAELLAQLPGI 116 Query: 402 DEETAVEIQGRAR-------EYLEGIDITLQKKI--------RELGVSEELCSIPGIDSK 446 D +Q AR L +D ++ EL E + + G+ K Sbjct: 117 DPARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQPERMARVRGVGEK 176 Query: 447 IKVALGENGIKTMEDLA 463 L G +++ED+A Sbjct: 177 TIEQLILAGYRSVEDIA 193 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA-CVKISEIASIEGFDEET 405 R D + + + V E L+ G+ VE++A ++++ + G + Sbjct: 152 AEARRHPDELSQPERMARVRGVGEKTIEQLILAGYRSVEDIANEKDLAKLGDVPGVGIKK 211 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELG 432 A +++ A YL + E G Sbjct: 212 ARQLKSAAENYLVEEAKLRAELNAERG 238 >gi|49146092|ref|YP_025530.1| nucleic acid binding protein [Mycobacterium ulcerans Agy99] gi|42414726|emb|CAE46819.1| possible nucleic acid binding protein [Mycobacterium ulcerans Agy99] Length = 182 Score = 152 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 204 HPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQ 263 P + VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ Sbjct: 30 SPNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIA 89 Query: 264 AVVTELRDEKIDIVVWSPDSATFVINALR-P--AIVTKVVLDEDVGRIEVIVPKEQLSLA 320 V L E+I +V + D AT+VIN L P +E RI V V Sbjct: 90 DVEKGLGGERIHVVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRT 149 Query: 321 IGRRGQNVRLASQLTGWTIDIITEE 345 +G+ GQNVRLAS+LTG I+I+ E+ Sbjct: 150 VGKAGQNVRLASKLTGQKIEILVEK 174 >gi|331006261|ref|ZP_08329581.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330419950|gb|EGG94296.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 159 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 19/178 (10%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++ E+ ++++ + + FM+A++VDE +A +LV EGF +EE+A V + E+ IEGF Sbjct: 1 MSVEQWEDKQEQEAGGQVELFMEALDVDEDVAAVLVEEGFTSLEEVAYVPLEEMLGIEGF 60 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 DE+ A E++ RA++ L + ++K+ +E+L ++ G+D+ + L + G+ MED Sbjct: 61 DEDIANELRSRAKDTLLTKALASEEKLEGAEPAEDLVAMEGMDNALAAVLAKRGVVCMED 120 Query: 462 LAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 LA +VD+LL G +++ ++I+ AR W + ++ Sbjct: 121 LAEQAVDELLDID-----------------GMTEERAAALIMKAREP--WFASSETSE 159 >gi|409843|gb|AAD10598.1| Significant homology to E.coli protein NusA X00513 [Mycoplasma genitalium] Length = 217 Score = 151 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 10/216 (4%) Query: 53 INPETGDISLFRLLEVV-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV 109 IN + G I++ +L VV +E E+Y +I L+ A + S+ +G V+ P+P + Sbjct: 2 INFDKGIINVEQLFNVVSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSD 61 Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDG 163 + + QK+ E EF +VGE+I V+ ++ I++L + G Sbjct: 62 LINKMIAIFNQKISETNFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKG 121 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 I + E E L G + I +++R+ + LSR+ + + L PEI NG Sbjct: 122 YISKRELSKGERLEIGKKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGT 181 Query: 224 VQVKAVSRDPGSRAKLAVFSSDS-SIDPVGACVGMR 258 + +K + R PG ++K+AV S+D+ S DPV A +G + Sbjct: 182 IVIKKIERSPGVKSKIAVISNDACSWDPVAAILGPK 217 >gi|296163996|ref|ZP_06846621.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900648|gb|EFG80029.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 148 Score = 146 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 72/129 (55%) Query: 217 PEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 PE+ NG V++ AV+R+PG AK+AV S I+ V C+G G R+ V L E + I Sbjct: 2 PELANGSVEIIAVAREPGLLAKVAVRSRVRGINAVAVCIGWGGLRIADVEKRLCGEHVSI 61 Query: 277 VVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 + + D+A +VINAL V++ + RI V V + + A+G+ G N+RL QLT Sbjct: 62 IAYDSDTARYVINALGIKSAIAEVINPEQRRIRVYVNPDDYARALGKVGHNLRLVRQLTS 121 Query: 337 WTIDIITEE 345 +I I T Sbjct: 122 CSIHIRTAT 130 >gi|328479976|gb|EGF49013.1| transcription elongation factor NusA [Lactobacillus rhamnosus MTCC 5462] Length = 117 Score = 143 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 70/116 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + Sbjct: 2 SKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 EV +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+ Sbjct: 62 KEVTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQR 117 >gi|153812997|ref|ZP_01965665.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174] gi|149830944|gb|EDM86034.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174] Length = 139 Score = 142 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 47/93 (50%), Positives = 61/93 (65%) Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D V+VP Q Sbjct: 1 MNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKTALVVVPDYQ 60 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 LSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 61 LSLAIGKEGQNARLAARLTGFKIDIKSETQARE 93 >gi|207109944|ref|ZP_03244106.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 127 Score = 140 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 1/120 (0%) Query: 152 GNVIVDLGNSD-GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 N +++ GV+ I E+ + GD +K+ + V+R ++G + LSRT P+ + Sbjct: 1 QNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKAVLTQVKRTKKGLLLELSRTTPKMLEA 60 Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270 L +EVPEI + +++ +R PG+RAK++ FS ++ IDP+GA VG++G R+ A+ EL Sbjct: 61 LLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSHNARIDPIGAAVGVKGVRINAISNELN 120 >gi|33322909|gb|AAQ07191.1|AF496499_1 transcription termination/antitermination factor [Lactobacillus delbrueckii subsp. lactis] Length = 95 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 2/95 (2%) Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 ++G V++ +++R+ G R K+AV S+D +IDPVG CVG RGSRVQ VV EL E IDIV + Sbjct: 1 FDGTVEIISIAREAGERTKIAVKSNDPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQY 60 Query: 280 SPDSATFVINALRPAIVTKVVL--DEDVGRIEVIV 312 D + ++ NAL PA V V ++D + VIV Sbjct: 61 EEDPSDYIANALNPAEVIAVQFEDEDDERKAFVIV 95 >gi|215428280|ref|ZP_03426199.1| transcription elongation factor NusA [Mycobacterium tuberculosis T92] gi|289751502|ref|ZP_06510880.1| N utilization substance protein A nusA [Mycobacterium tuberculosis T92] gi|289692089|gb|EFD59518.1| N utilization substance protein A nusA [Mycobacterium tuberculosis T92] Length = 166 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 30/177 (16%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRP 178 Y EF + GEI++G ++R N V+V +G S+GVI E + + Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPPPEPVPGRAMNM 159 >gi|254993851|ref|ZP_05276041.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-064] Length = 104 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 53/101 (52%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108 VE+V + +IS++ A +P G VV + P DFGR Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGR 104 >gi|153873980|ref|ZP_02002373.1| transcription elongation factor NusA [Beggiatoa sp. PS] gi|152069557|gb|EDN67628.1| transcription elongation factor NusA [Beggiatoa sp. PS] Length = 99 Score = 107 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++L + D V+ EK + ++V+ + + +I A + Y D+RV I+ TGD FR Sbjct: 2 NKDILLVVDVVSNEKGVSKEVIFNALECAIASATKKRYEGEVDVRVHIDRRTGDYKAFRR 61 Query: 66 LEVVEEVEN---YTCQISLKVARDRDPSIDIGGVVS 98 + VEE E Q++L A+ +P+I IG Sbjct: 62 WQAVEEEEELDSPHTQMNLTEAQIHNPNIAIGEWFE 97 >gi|254669624|emb|CBA03668.1| N utilization substance protein A [Neisseria meningitidis alpha153] Length = 136 Score = 94.0 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVENYT 76 +V + E+YT Sbjct: 69 LIVAD-EDYT 77 >gi|253734580|ref|ZP_04868745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|253727445|gb|EES96174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] Length = 73 Score = 89.0 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L Sbjct: 2 ELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA 61 Query: 454 NGIKTMEDLAGC 465 G+ T+EDLA Sbjct: 62 RGVCTLEDLAEQ 73 >gi|218678853|ref|ZP_03526750.1| transcription elongation factor NusA [Rhizobium etli CIAT 894] Length = 82 Score = 85.9 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 33/74 (44%), Positives = 48/74 (64%) Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E MI+ AR GWI Sbjct: 1 EDGIKTIEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMIVQARLSAGWI 60 Query: 513 EKEKVADEEVQDAS 526 +E +A E ++ + Sbjct: 61 TQEDLAKEAEEEVT 74 >gi|159163264|pdb|1WCL|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of Escherichia Coli Nusa Length = 76 Score = 85.1 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 2 AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 61 Query: 415 EYLEGIDITLQKKIR 429 L I ++ + Sbjct: 62 NALATIAQAQEESLG 76 >gi|213425432|ref|ZP_03358182.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 62 Score = 82.8 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR+ Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRV 61 >gi|52696033|pdb|1U9L|A Chain A, Structural Basis For A Nusa- Protein N Interaction gi|52696034|pdb|1U9L|B Chain B, Structural Basis For A Nusa- Protein N Interaction Length = 70 Score = 81.3 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 1 AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 Query: 415 EYLEGIDITL 424 L I Sbjct: 61 NALATIAQAQ 70 >gi|207109128|ref|ZP_03243290.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 129 Score = 80.1 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 22/116 (18%) Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKV----------------------VLDED 304 EL E ID + +S ++ AL PA + V +++ Sbjct: 1 NELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKIPIEELNAEEKESIQERFIVNNH 60 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + + +V + + S AIG+ G NV LAS LTG+ I+ T N + + + TQ Sbjct: 61 LQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFETIPSVKENAENESEKETQ 116 >gi|76664821|emb|CAJ17848.1| transcription terminator nusA [Candidatus Phytoplasma solani] Length = 162 Score = 79.7 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE----- 73 E+ + R V+ + + + + RV++ +I L++ V ++ Sbjct: 1 ERDLPRKEVIEAFGKGLIAGCKKNH-QVKSCRVQMRENKSEILLYKQFIVADKTNIGMIN 59 Query: 74 -NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 I L A+ P +G ++ + P +F A++ K +++ + +R+ Y Sbjct: 60 LKELTPIDLSEAQTIKPQAKVGQIIEIKVDPKEFNLYAIKEFKNQFNEELTKRKRENIYH 119 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 FK++ G++IS V ++L ++ + E Sbjct: 120 FFKEQEGKLISAKVISENERFYNLELEKEITTLLPKKEISDN 161 >gi|291532986|emb|CBL06099.1| NusA N-terminal domain [Megamonas hypermegale ART12/1] Length = 67 Score = 77.4 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + ++ L V EK I +V+ + ++ A + + T S++RV + TG+ Sbjct: 1 MATKDKG-FLDALKEVGQEKGIAPEVLFEAVEAALVSAYKRNFNTASNVRVYLERATGEF 59 Query: 61 SLFRLLE 67 ++ + Sbjct: 60 HVYAQKK 66 >gi|228311785|pdb|2JZB|B Chain B, Solution Structure Of The Complex Between E.Coli Nusa-Ar2 And Rnap-Actd Length = 74 Score = 75.9 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 18/89 (20%) Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 3 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE------------ 50 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 51 -----GLTDEKAGALIMAAR-NICWFGDE 73 Score = 45.4 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + VD +A L A G +E+LA I ++A IEG +E A + AR Sbjct: 13 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 66 >gi|291532985|emb|CBL06098.1| hypothetical protein MHY_11450 [Megamonas hypermegale ART12/1] Length = 65 Score = 73.9 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI--NRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + D N ++ Sbjct: 3 RVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAAEEGFDSDDMNMVNVVSEESF 62 Query: 367 NVD 369 +VD Sbjct: 63 SVD 65 >gi|59041351|gb|AAW83814.1| putative transcription elongation factor [Legionella pneumophila] Length = 99 Score = 73.9 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 20/118 (16%) Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 + +IE FDEE E++ +A + L + ++ K + + L ++ G+ + L Sbjct: 1 LPAIEEFDEEIVEELRNKANDKLLEMALSSGKGLSG-TPDDSLINMEGMTEDLANKLASK 59 Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 GI TMEDLA SVD+L+ G +++ ++I+ AR W Sbjct: 60 GIATMEDLAEQSVDELMEIE-----------------GISEEKAGALIMKAREP--WF 98 Score = 53.9 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + + E +A+ L ++G A +E+LA + E+ IEG EE A + +ARE Sbjct: 40 DSLINMEGMTEDLANKLASKGIATMEDLAEQSVDELMEIEGISEEKAGALIMKARE 95 >gi|261886075|ref|ZP_06010114.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 124 Score = 72.8 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ I +++A E ++ + V + + AA+ LYG + ++P T I L++ + Sbjct: 3 KISDIIESIANEICLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKIL 62 Query: 68 VVEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 VVE+ + + ISLK A + D +++IG ++ L + GR Sbjct: 63 VVEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGA 109 >gi|159163265|pdb|1WCN|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of Escherichia Coli Nusa Length = 70 Score = 72.4 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 18/86 (20%) Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 2 DNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE--------------- 46 Query: 490 SLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 47 --GLTDEKAGALIMAAR-NICWFGDE 69 Score = 44.3 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + VD +A L A G +E+LA I ++A IEG +E A + AR Sbjct: 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 >gi|20094120|ref|NP_613967.1| transcription elongation factor NusA-like protein [Methanopyrus kandleri AV19] gi|19887121|gb|AAM01897.1| Transcription elongation factor NusA [Methanopyrus kandleri AV19] Length = 142 Score = 71.2 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 +G +G +G V+ V +L +++V S D F+ NAL PA V V + E + Sbjct: 45 IGLAIGKKGQNVRRVQEQL-GMDVEVVEHSEDPEKFIRNALFPARVKSVRVTERGNKKVA 103 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334 V VP+ + IG+ G+N++ A L Sbjct: 104 IVDVPESERGRVIGKGGRNIKKARIL 129 Score = 48.5 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +L A V V+D++ R +V + Q+ LAIG++GQNVR + G ++++ ED Sbjct: 18 SLTGAHVLDCVIDDEHNRAIFVVKEGQIGLAIGKKGQNVRRVQEQLGMDVEVVEHSEDPE 77 Query: 350 NRQK 353 + Sbjct: 78 KFIR 81 >gi|315302976|ref|ZP_07873696.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] gi|313628656|gb|EFR97069.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] Length = 55 Score = 69.7 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 ELL + ++K I R+V++ + ++ A + + ++RV++N E G Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENG 54 >gi|15621245|dbj|BAB65240.1| 130aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 130 Score = 68.6 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 ++P +G +G GS V+ + +L + I+IV +S + V N + PA V V + Sbjct: 28 VNPENMGTAIGKNGSNVKRL-EKLIGKSIEIVGYSDNLEDLVRNLMAPAKVRSVKVVQSN 86 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V + LAIG+ G+NV A + +DI + Sbjct: 87 SKKTVYINVDPQDKGLAIGKNGRNVTRAKLILKRYMDIDS 126 Score = 44.7 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++DE+ RI +V E + AIG+ G NV+ +L G +I+I+ ++ + + Sbjct: 16 IVDEENNRIIFLVNPENMGTAIGKNGSNVKRLEKLIGKSIEIVGYSDNLEDLVR 69 >gi|327401229|ref|YP_004342068.1| NusA family KH domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316737|gb|AEA47353.1| NusA family KH domain protein [Archaeoglobus veneficus SNP6] Length = 139 Score = 68.2 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 GA +G G ++ EL ++I+++ S D A F++N +P V KV L E + Sbjct: 44 GAAIGKGGINIER-ARELMGKRIEVIEHSDDPAEFIVNIFKPIKV-KVKLIEKGGKKIAQ 101 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V V + LAIG+ G+N+ A +L Sbjct: 102 VGVDPQYKGLAIGKGGKNINKAKEL 126 >gi|161751102|ref|NP_376131.2| transcription elongation factor NusA-like protein [Sulfolobus tokodaii str. 7] Length = 143 Score = 68.2 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 ++P +G +G GS V+ + +L + I+IV +S + V N + PA V V + Sbjct: 41 VNPENMGTAIGKNGSNVKRL-EKLIGKSIEIVGYSDNLEDLVRNLMAPAKVRSVKVVQSN 99 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V + LAIG+ G+NV A + +DI + Sbjct: 100 SKKTVYINVDPQDKGLAIGKNGRNVTRAKLILKRYMDIDS 139 Score = 44.3 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++DE+ RI +V E + AIG+ G NV+ +L G +I+I+ ++ + + Sbjct: 29 IVDEENNRIIFLVNPENMGTAIGKNGSNVKRLEKLIGKSIEIVGYSDNLEDLVR 82 >gi|15679067|ref|NP_276184.1| transcription elongation factor NusA-like protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622153|gb|AAB85545.1| transcription termination factor NusA [Methanothermobacter thermautotrophicus str. Delta H] Length = 143 Score = 67.0 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 252 GACVGMRGSRVQAVVTEL-RDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGR 307 G +G +GS V V L + ++++ S D F+ N + PA V + + + Sbjct: 46 GLAIGKKGSTVAKVQKALDKG--VEVIEHSNDPVEFIKNLMAPAKVRSIRILQKENGEKI 103 Query: 308 IEVIVPKEQLSLAIGRRGQNV---RLASQ 333 V + +AIGR GQN+ RL ++ Sbjct: 104 ATVETDPKNKRIAIGRGGQNIERARLLAR 132 >gi|23008735|ref|ZP_00050053.1| hypothetical protein Magn03003752 [Magnetospirillum magnetotacticum MS-1] Length = 97 Score = 67.0 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE--KEKVADEE 521 GC+ DDL+G++E +G + GFL + + E++I+ AR GWIE E A+ Sbjct: 3 GCANDDLVGYTEGRGPEAVRHAGFLDGFELSRAEAEALIMAARVHAGWIEAPPEPEAESV 62 Query: 522 VQDAS 526 +AS Sbjct: 63 EGEAS 67 >gi|126465706|ref|YP_001040815.1| NusA family protein [Staphylothermus marinus F1] gi|126014529|gb|ABN69907.1| NusA family KH domain protein [Staphylothermus marinus F1] Length = 150 Score = 66.6 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---V 305 D VG VG RG VQ + L + I+IV +S D V AL PA + +V + Sbjct: 50 DEVGKAVGPRGLYVQKLRK-LLGKNIEIVGYSDDLEEQVRYALAPARIREVRITNRPGGK 108 Query: 306 GRIEVIVPKEQLSLAIGRRGQNV 328 + V V +AIGR G+NV Sbjct: 109 KVVYVSVEPNDKGMAIGRGGKNV 131 >gi|304315189|ref|YP_003850336.1| transcription termination factor [Methanothermobacter marburgensis str. Marburg] gi|302588648|gb|ADL59023.1| transcription termination factor [Methanothermobacter marburgensis str. Marburg] Length = 143 Score = 66.6 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 252 GACVGMRGSRVQAVVTEL-RDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGR 307 G +G +GS V V L + ++++ S D F+ N + PA + + + + Sbjct: 46 GLAIGKKGSTVAKVQKALDKG--VEVIEHSSDPVEFIKNLMAPAKIRSIRILQKENGEKI 103 Query: 308 IEVIVPKEQLSLAIGRRGQNV---RLASQ 333 V + +AIGR GQN+ RL ++ Sbjct: 104 ATVETDPKNKRIAIGRGGQNIERARLLAR 132 >gi|297527621|ref|YP_003669645.1| NusA family KH domain protein [Staphylothermus hellenicus DSM 12710] gi|297256537|gb|ADI32746.1| NusA family KH domain protein [Staphylothermus hellenicus DSM 12710] Length = 150 Score = 66.2 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---V 305 D VG VG RG VQ + L + I+IV +S D V AL PA + +V + Sbjct: 50 DEVGKAVGPRGLYVQKLRK-LLGKNIEIVGYSDDLEEQVRYALAPARIREVRITNRPGGK 108 Query: 306 GRIEVIVPKEQLSLAIGRRGQNV 328 + V V +AIGR G+NV Sbjct: 109 KVVYVSVEPNDKGMAIGRGGKNV 131 >gi|307353872|ref|YP_003894923.1| NusA family KH domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157105|gb|ADN36485.1| NusA family KH domain protein [Methanoplanus petrolearius DSM 11571] Length = 156 Score = 65.5 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 I+P +G +G G ++ EL +KI++V +S D F+ N PA V V + E+ Sbjct: 41 INPGDMGRAIGKSGVSIKKASDEL-GKKIEVVEFSNDPVQFIKNCFLPARVISVDIRENA 99 Query: 306 G---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V V +E + +AIG+ G+N+ A++L DI + + ++ + Sbjct: 100 EGEFEAFVDVEEEDMGIAIGKGGKNIFKANKLAERQHDIANVQIITNAEDEEAGD 154 >gi|312136872|ref|YP_004004209.1| nusa family kh domain protein [Methanothermus fervidus DSM 2088] gi|311224591|gb|ADP77447.1| NusA family KH domain protein [Methanothermus fervidus DSM 2088] Length = 143 Score = 65.5 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 252 GACVGMRGSRVQAVVTEL-RDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGR 307 G +G RGS + V L + ++++ S D F+ N L PA + + + + Sbjct: 46 GLAIGRRGSTIAKVRKTLDKG--VEVLEHSDDPVEFISNILSPAKLKSIRILQKENGEKI 103 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334 V + IG+ GQN++ A L Sbjct: 104 ATVKADARNKRIIIGKGGQNIKRAKIL 130 Score = 37.4 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 277 VVWSPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRG 325 + ++ D ++ +L A V ++DE G++ +V K + LAIGRRG Sbjct: 3 IKFTTDEIRYIALFESLTGAAVKDCIIDEKRGKVTFLVKKGDMGLAIGRRG 53 >gi|116753357|ref|YP_842475.1| NusA family protein [Methanosaeta thermophila PT] gi|116664808|gb|ABK13835.1| NusA family KH domain protein [Methanosaeta thermophila PT] Length = 143 Score = 65.1 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR-IE 309 GA +G +GS + V + ++I+IV +S D F+ N +PA V + V++++ R Sbjct: 47 GAAIGRKGSNINRVKKSI-GKQIEIVEYSDDVKEFLQNLFQPADVKNIMVVNKNNKRLAY 105 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V V + +AIGR G+N+ A L Sbjct: 106 VEVANKDKGIAIGRDGRNILKAKML 130 >gi|126178254|ref|YP_001046219.1| NusA family protein [Methanoculleus marisnigri JR1] gi|126178267|ref|YP_001046232.1| NusA family protein [Methanoculleus marisnigri JR1] gi|125861048|gb|ABN56237.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] gi|125861061|gb|ABN56250.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] Length = 149 Score = 65.1 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--- 302 I+P +G +G GS ++ + ++I++V +S D + F+ N PA VT + D Sbjct: 41 INPGDMGLAIGKSGSSIKKASD-VMGKRIEVVEYSADPSQFLRNCFLPAQVTGIDFDTDE 99 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNV 328 ED + V E LAIG+ G+N+ Sbjct: 100 EDQQIALIDVRDEDRGLAIGKAGKNI 125 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++D RI ++ + LAIG+ G +++ AS + G I+++ D ++ Sbjct: 29 IVDNRNERIIFVINPGDMGLAIGKSGSSIKKASDVMGKRIEVVEYSADPSQFLRNCFLPA 88 Query: 360 QFFMQAINVDEIIAHL 375 Q + DE + Sbjct: 89 QVTGIDFDTDEEDQQI 104 >gi|88601374|ref|YP_501552.1| NusA family protein [Methanospirillum hungatei JF-1] gi|88186836|gb|ABD39833.1| NusA family KH domain protein [Methanospirillum hungatei JF-1] Length = 142 Score = 65.1 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++P +G +G +G ++ ++I+ V +S D A F+ N PA V +V + Sbjct: 40 VNPGDMGYAIGKKGVNIKKASESF-GKRIEAVEYSDDPAQFIRNCFHPAQVKEVQFSDYH 98 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQN 327 V++ E AIG+ G+N Sbjct: 99 GEQIAHVVIRDEDRGRAIGKAGKN 122 >gi|282163891|ref|YP_003356276.1| NusA protein homolog [Methanocella paludicola SANAE] gi|282156205|dbj|BAI61293.1| NusA protein homolog [Methanocella paludicola SANAE] Length = 147 Score = 64.7 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%) Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D +G +G G+ + V ++ ++++ ++ D F+ N +PA V +V Sbjct: 42 VKSGD-----MGLAIGKNGNNINRVKKQI-GRHVEVIEYNEDPKEFIKNLFQPATVKNIV 95 Query: 301 LDEDVGR--IEVIVPKEQLSLAIGRRGQN---VRLASQ 333 + R V V + LAIG+ G+N V+L +Q Sbjct: 96 ISTKGERTLAIVDVATKDKGLAIGKNGRNINKVKLLAQ 133 >gi|11499475|ref|NP_070716.1| transcription elongation factor NusA-like protein [Archaeoglobus fulgidus DSM 4304] gi|2648654|gb|AAB89363.1| transcription termination-antitermination factor NusA, putative [Archaeoglobus fulgidus DSM 4304] Length = 139 Score = 64.3 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKVVLDEDVGRIEV 310 G +G G V+ EL ++I+I+ S D A F+ N +P V K++ E V Sbjct: 44 GVAIGKGGINVER-ARELIGKRIEIIEHSEDPAEFIANIFKPIKVNVKLMEKEGSKIAVV 102 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + + IG+ G+N+ A +L DI Sbjct: 103 SVSPDLKGIVIGKGGKNINKAKELAKRHHDI 133 >gi|154151469|ref|YP_001405087.1| NusA family protein [Candidatus Methanoregula boonei 6A8] gi|154000021|gb|ABS56444.1| NusA family KH domain protein [Methanoregula boonei 6A8] Length = 154 Score = 64.3 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 ++P +G +G +G+ ++ +E +KI++V ++ +S F+ N PA VT +V + Sbjct: 41 VNPGDMGLAIGKKGASIKK-ASEAMGKKIEVVEYNSNSEQFLKNCFLPAQVTSIVFSGEP 99 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 D V V E +AIG+ G+N+ A +L Sbjct: 100 DAQSATVEVRDEDRGIAIGKDGKNIFKAKKL 130 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V+D+ R+ +V + LAIG++G +++ AS+ G I+++ +S K Sbjct: 29 VIDDRNERLIFVVNPGDMGLAIGKKGASIKKASEAMGKKIEVVEYNSNSEQFLK 82 >gi|156937041|ref|YP_001434837.1| NusA family protein [Ignicoccus hospitalis KIN4/I] gi|156566025|gb|ABU81430.1| NusA family KH domain protein [Ignicoccus hospitalis KIN4/I] Length = 143 Score = 63.9 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 VG +G RG V+ + E+ ++I+IV +S + V NAL PA V V + + V Sbjct: 46 VGRAIGKRGFMVRKL-KEILKKQIEIVPYSDNIEEMVKNALAPARVIGVRVSKTPKGKVV 104 Query: 311 I--VPKEQLSLAIGRRGQNV 328 V + +AIG+ G+NV Sbjct: 105 YARVNPKDKGVAIGKEGRNV 124 >gi|21228370|ref|NP_634292.1| transcription elongation factor NusA-like protein [Methanosarcina mazei Go1] gi|20906840|gb|AAM31964.1| NusA protein homolog [Methanosarcina mazei Go1] Length = 141 Score = 63.9 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--IE 309 G +G G + V L D+ I++V +S D TF+ NA P V+ V L G+ Sbjct: 45 GLAIGKNGENINRVKKAL-DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTNKNGKRLAY 103 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 104 VEVPNKEKGLAIGRNGKNIEKVKML 128 >gi|296243128|ref|YP_003650615.1| NusA family KH domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095712|gb|ADG91663.1| NusA family KH domain protein [Thermosphaera aggregans DSM 11486] Length = 148 Score = 63.5 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++P VG +G +G VQ + L I+IV +S + V AL PA + ++ + Sbjct: 45 VNPEDVGKAIGPKGFFVQKLRKILNK-NIEIVGYSDNLEEQVKYALAPARIKEIKVTSKP 103 Query: 305 --VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + V V LAIG+ G+NV+ A + +I + Sbjct: 104 GGEKVVYVAVDPSDKGLAIGKNGRNVQKAKIILKRHFNIDS 144 >gi|147921531|ref|YP_684653.1| transcription termination factor NusA [uncultured methanogenic archaeon RC-I] gi|110620049|emb|CAJ35327.1| transcription termination factor NusA [uncultured methanogenic archaeon RC-I] Length = 146 Score = 63.2 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--IE 309 G +G G+ + V ++ I+++ +S D F+ N +PA V V + R Sbjct: 47 GLAIGKNGNNINRVKKQI-GRLIEVIEYSEDPKEFIRNLFQPAAVKNVTISTRGDRSIAI 105 Query: 310 VIVPKEQLSLAIGRRGQN---VRLASQ 333 V + + LAIG+ G+N V+L +Q Sbjct: 106 VDIATKDKGLAIGKNGRNINKVKLLAQ 132 >gi|19915104|gb|AAM04679.1| transcription termination factor NusA [Methanosarcina acetivorans C2A] Length = 149 Score = 63.2 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIE 309 G +G G + V L D+ I++V +S D TF+ NA P V+ V L Sbjct: 53 GLAIGKNGENINRVKKAL-DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRLAY 111 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 112 VEVPNKEKGLAIGRNGKNIEKVKML 136 >gi|161484938|ref|NP_616199.2| transcription elongation factor NusA-like protein [Methanosarcina acetivorans C2A] Length = 141 Score = 62.8 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIE 309 G +G G + V L D+ I++V +S D TF+ NA P V+ V L Sbjct: 45 GLAIGKNGENINRVKKAL-DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRLAY 103 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 104 VEVPNKEKGLAIGRNGKNIEKVKML 128 >gi|288561065|ref|YP_003424551.1| transcription elongation factor NusA-like protein [Methanobrevibacter ruminantium M1] gi|288543775|gb|ADC47659.1| transcription elongation factor NusA-like protein [Methanobrevibacter ruminantium M1] Length = 134 Score = 62.4 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+ + + G + G+ V V + ++I+ ++ D F+ N L PA + Sbjct: 25 SKVTFVVKNGDM---GLAIAKGGTTVTKV-KKAVGRGVEIIEYNEDPEQFIKNILSPAEL 80 Query: 297 TKVVL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + + + D V +AIG+ G N+ A L Sbjct: 81 KSIKIVTKNNDEKIAFVNTDSSNKRIAIGKGGINIERAKLL 121 >gi|219558858|ref|ZP_03537934.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] gi|289571029|ref|ZP_06451256.1| N utilization substance protein A [Mycobacterium tuberculosis T17] gi|289544783|gb|EFD48431.1| N utilization substance protein A [Mycobacterium tuberculosis T17] Length = 78 Score = 62.0 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARET 62 >gi|222445203|ref|ZP_03607718.1| hypothetical protein METSMIALI_00826 [Methanobrevibacter smithii DSM 2375] gi|261350235|ref|ZP_05975652.1| transcription termination factor NusA [Methanobrevibacter smithii DSM 2374] gi|222434768|gb|EEE41933.1| hypothetical protein METSMIALI_00826 [Methanobrevibacter smithii DSM 2375] gi|288861021|gb|EFC93319.1| transcription termination factor NusA [Methanobrevibacter smithii DSM 2374] Length = 143 Score = 61.6 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRI 308 G +G GS V V D+ I+IV S D F+ N L PA V V + + Sbjct: 46 GLAIGKGGSTVSKV-QRAVDKGIEIVELSDDPIQFIKNLLSPAEVQGVKVLQKESGEKIA 104 Query: 309 EVIVPKEQLSLAIGRRGQNV---RLASQ 333 V +AIG+ G N+ +L ++ Sbjct: 105 TVTADNTNKRIAIGKNGVNIERAKLIAK 132 >gi|325960112|ref|YP_004291578.1| NusA family KH domain-containing protein [Methanobacterium sp. AL-21] gi|325331544|gb|ADZ10606.1| NusA family KH domain protein [Methanobacterium sp. AL-21] Length = 143 Score = 61.6 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 9/89 (10%) Query: 252 GACVGMRGSRVQAVVTEL-RDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGR 307 G +G RGS V V + + ++++ S D F+ N + PA + + + + Sbjct: 46 GLAIGKRGSTVTKVQKTVDKG--VEVIEHSDDPVEFITNLMAPAKLRSIRILQKENGEKI 103 Query: 308 IEVIVPKEQLSLAIGRRGQNV---RLASQ 333 + AIG+ GQN+ RL ++ Sbjct: 104 ATIEADSRNKRTAIGKAGQNIERARLLAK 132 >gi|330507368|ref|YP_004383796.1| NusA protein-like protein [Methanosaeta concilii GP-6] gi|328928176|gb|AEB67978.1| NusA protein-like protein [Methanosaeta concilii GP-6] Length = 143 Score = 61.6 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGR-IE 309 GA +G +GS + V + ++I+IV +S D F+ N +PA + V V++++ R Sbjct: 47 GAAIGRKGSNINRVKKSV-GKQIEIVEYSEDVKEFLENLFQPAAIKNVMVVNKNSKRLAY 105 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V V + +AIGR G+N+ A L Sbjct: 106 VEVANKDKGIAIGRDGRNILKAKML 130 >gi|218884682|ref|YP_002429064.1| NusA family KH domain protein [Desulfurococcus kamchatkensis 1221n] gi|218766298|gb|ACL11697.1| NusA family KH domain protein [Desulfurococcus kamchatkensis 1221n] Length = 148 Score = 61.6 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--- 302 ++P VG +G +G VQ + L I+IV +S + V AL PA + ++ L Sbjct: 45 VNPEDVGKAIGPKGFFVQRLRKILNK-NIEIVGYSNNLEEQVRYALSPARIKEIKLSTRP 103 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V V +AIG+ G+NV+ A + +I + Sbjct: 104 DGSKILYVAVDPSDKGIAIGKNGKNVQRAKLILKRHFNIDS 144 >gi|307595334|ref|YP_003901651.1| NusA family KH domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550535|gb|ADN50600.1| NusA family KH domain protein [Vulcanisaeta distributa DSM 14429] Length = 150 Score = 61.2 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVI- 311 VG G ++ + EL + +++V + + N+L PA V V + + G I + Sbjct: 50 VGKNGINIRKL-KELTGKDVEVVEYGETPEELIKNSLYPARVISVKITKLPNNGSIAIAT 108 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V E ++AIG++G+N+ A L DI Sbjct: 109 VHNEDKAIAIGKQGRNINRAKLLAKRYFDI 138 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V+D RI IV K LA+G+ G N+R +LTG ++++ E K Sbjct: 29 VIDPQYNRIIFIVDKNFAPLAVGKNGINIRKLKELTGKDVEVVEYGETPEELIK 82 >gi|84490157|ref|YP_448389.1| transcription elongation factor NusA-like protein [Methanosphaera stadtmanae DSM 3091] gi|84373476|gb|ABC57746.1| NusA [Methanosphaera stadtmanae DSM 3091] Length = 143 Score = 60.8 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGRI 308 G +G RGS + + ++ D+ I+I+ S D F+ N L A V + + Sbjct: 46 GLAIGKRGSTIAKMQNKV-DKSIEIIEHSDDPGEFIKNLLSVAKVNSIEFSTNAKGNKIA 104 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + IG+ GQN+R A Q DI Sbjct: 105 TLDVDSKTKRSTIGKNGQNIRRARQFAKRQFDI 137 >gi|325969569|ref|YP_004245761.1| NusA family KH domain protein [Vulcanisaeta moutnovskia 768-28] gi|323708772|gb|ADY02259.1| NusA family KH domain protein [Vulcanisaeta moutnovskia 768-28] Length = 150 Score = 60.5 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVI- 311 VG G ++ + EL + +++V + + N+L PA V + + + G I + Sbjct: 50 VGKNGINIRKL-KELTGKDVEVVEYGETPEELIKNSLYPARVLSIKITKLPNNGSIAIAT 108 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V E ++AIG++G+N+ A L DI Sbjct: 109 VHNEDKAIAIGKQGRNINRAKLLAKRYFDI 138 >gi|73671117|ref|YP_307132.1| transcription elongation factor NusA-like protein [Methanosarcina barkeri str. Fusaro] gi|72398279|gb|AAZ72552.1| transcription termination factor NusA [Methanosarcina barkeri str. Fusaro] Length = 141 Score = 60.1 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--IE 309 G +G G + V L D+ I++V +S + TF+ NA P V+ V + G+ Sbjct: 45 GLAIGRNGENINRVKKAL-DKPIELVEYSDEPVTFLKNAFGPVSVSSVNIINKNGKRLAY 103 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 104 VEVPNKEKGLAIGRNGKNIEKVKML 128 >gi|212223367|ref|YP_002306603.1| transcription elongation factor NusA-like protein [Thermococcus onnurineus NA1] gi|212008324|gb|ACJ15706.1| transcription termination-antitermination factor [Thermococcus onnurineus NA1] Length = 145 Score = 59.7 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G +G+ V+ V L E I+++ S + F+ N +L V KV + E Sbjct: 46 GLALGKKGANVKRVQNMLGKE-IELIEHSENPEEFLRNIYKSLG-VKVKKVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + + + AIGR GQN+ L +L Sbjct: 104 KVALLDIGPREKPRAIGRGGQNINLVKEL 132 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ ++ A V ++D + R+ ++ + ++ LA+G++G NV+ + G Sbjct: 6 NTDQIKYIALFESMTGATVLDCLIDSNRNRLIYVIKRGEMGLALGKKGANVKRVQNMLGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 I++I E+ ++ + ++ +++ E Sbjct: 66 EIELIEHSENPEEFLRNIYKSLGVKVKKVHITE 98 >gi|57641014|ref|YP_183492.1| transcription elongation factor NusA-like protein [Thermococcus kodakarensis KOD1] gi|57159338|dbj|BAD85268.1| transcription termination-antitermination factor, NusA homolog [Thermococcus kodakarensis KOD1] Length = 145 Score = 59.7 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G +G+ V+ V L E I+++ S + F+ N +L V KV + E Sbjct: 46 GLALGKKGANVKRVQGMLGKE-IELIEHSENPEEFLRNIYKSLG-VKVKKVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V AIGR GQN+ L +L Sbjct: 104 KVALLDVGPRDKPRAIGRGGQNINLVKEL 132 Score = 40.8 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ ++ A V ++D + R+ ++ K ++ LA+G++G NV+ + G Sbjct: 6 NTDQIKYIALFESMTGATVLDCLIDTNRNRLIYVIKKGEMGLALGKKGANVKRVQGMLGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 I++I E+ ++ + ++ +++ E Sbjct: 66 EIELIEHSENPEEFLRNIYKSLGVKVKKVHITE 98 >gi|254172398|ref|ZP_04879073.1| NusA family KH domain protein, archaeal [Thermococcus sp. AM4] gi|214033327|gb|EEB74154.1| NusA family KH domain protein, archaeal [Thermococcus sp. AM4] Length = 145 Score = 59.3 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G +G+ V+ V + E I+++ S + F+ N +L V K+ + E Sbjct: 46 GLALGKKGANVKRVQNMIGKE-IELIEHSENPEEFLRNIYKSLG-VKVKKIHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + + + AIGR GQN+ L QL Sbjct: 104 KVALLDISPREKPRAIGRGGQNINLVKQL 132 Score = 41.6 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ ++ A V ++D + R+ ++ K ++ LA+G++G NV+ + G Sbjct: 6 NTDQIKYIALFESMTGATVLDCLIDTNRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 I++I E+ ++ + ++ I++ E Sbjct: 66 EIELIEHSENPEEFLRNIYKSLGVKVKKIHITE 98 >gi|14520834|ref|NP_126309.1| transcription elongation factor NusA-like protein [Pyrococcus abyssi GE5] gi|5458050|emb|CAB49540.1| nusA transcription termination-antitermination factor nusA, putative [Pyrococcus abyssi GE5] Length = 145 Score = 59.3 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---VG 306 G +G RG V+ V L E ID+V S + F+ N + V +V + E Sbjct: 46 GLALGKRGINVRRVENLLGKE-IDLVEHSENPEEFIKNIYKTMGVKVKRVHITEKKDGKK 104 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V AIGR G N+ + QL Sbjct: 105 VALLDVNPRDKPKAIGRGGHNINIVRQL 132 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ + A V ++D++ R+ ++ K ++ LA+G+RG NVR L G Sbjct: 6 NTDQIKYIALFESFTGATVLDCLIDQERNRLIYVIKKGEMGLALGKRGINVRRVENLLGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 ID++ E+ K+ + ++ +++ E Sbjct: 66 EIDLVEHSENPEEFIKNIYKTMGVKVKRVHITE 98 >gi|315230009|ref|YP_004070445.1| NusA-like protein [Thermococcus barophilus MP] gi|315183037|gb|ADT83222.1| NusA-like protein [Thermococcus barophilus MP] Length = 145 Score = 59.3 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDEDV---G 306 G +G RG V+ + + L E ID++ S + F+ N + V KV + E Sbjct: 46 GLALGKRGMNVRRIQSMLGKE-IDLIEHSENPEEFLRNIYKTMGVRVKKVHITEKKNGKK 104 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V + AIGR G N+ L +L Sbjct: 105 VALLDVNQRDKPRAIGRGGHNINLVKEL 132 Score = 45.8 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ + A V ++D+D R+ ++ K ++ LA+G+RG NVR + G Sbjct: 6 NTDQIKYIALFESFTGATVLDCIIDQDRNRLIYVIKKGEMGLALGKRGMNVRRIQSMLGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 ID+I E+ ++ + ++ +++ E Sbjct: 66 EIDLIEHSENPEEFLRNIYKTMGVRVKKVHITE 98 >gi|298674724|ref|YP_003726474.1| NusA family KH domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287712|gb|ADI73678.1| NusA family KH domain protein [Methanohalobium evestigatum Z-7303] Length = 141 Score = 59.3 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Query: 252 GACVGMRGSRVQAVVTELRDEKID----IVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 GA +G G + V E +D +V +S D + F+ NA P V+ V L +D Sbjct: 45 GAAIGKNGEHINKVK-----ENVDKHVELVEYSEDPSEFIKNAFGPVAVSSVNLVNKDDK 99 Query: 306 GRIEVIVPKEQLSLAIGRRGQNV 328 V V LAIG G+N+ Sbjct: 100 QYAYVQVSNNSKGLAIGSNGKNI 122 >gi|68567140|gb|AAY80069.1| NusA [Sulfolobus acidocaldarius DSM 639] Length = 130 Score = 59.3 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDE 303 I+P +G +G G V+ + +L ++ ++IV + + V N + PA V KVV Sbjct: 28 INPESMGVAIGKNGLNVRKL-EKLINKSVEIVGYQENLEDLVKNLMSPARVKTIKVVQSN 86 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V + +AIG+ G+NV A + +DI + Sbjct: 87 SKKTVYITVEPQDKGIAIGKNGRNVERAKLILKRYLDIDS 126 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 32/54 (59%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++D+ RI +++ E + +AIG+ G NVR +L +++I+ +E+ + K Sbjct: 16 IIDDRNNRIILLINPESMGVAIGKNGLNVRKLEKLINKSVEIVGYQENLEDLVK 69 >gi|46673|emb|CAA32928.1| unnamed protein product [Sulfolobus acidocaldarius] Length = 130 Score = 58.9 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDE 303 I+P +G +G G V+ + +L ++ ++IV + + V N + PA V KVV Sbjct: 28 INPESMGVAIGKNGLNVRKL-EKLINKSVEIVGYQENLEDLVKNLMSPARVKTIKVVQSN 86 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V + +AIG+ G+NV A + +DI + Sbjct: 87 SKKTVYITVEPQDKGIAIGKNGRNVERAKLILKRYLDIDS 126 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 32/54 (59%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++D+ RI +++ E + +AIG+ G NVR +L +++I+ +E+ + K Sbjct: 16 IIDDRNKRIILLINPESMGVAIGKNGLNVRKLEKLINKSVEIVGYQENLEDLVK 69 >gi|162139950|ref|YP_255362.2| transcription elongation factor NusA-like protein [Sulfolobus acidocaldarius DSM 639] gi|73920241|sp|P11523|NUSA_SULAC RecName: Full=NusA protein homolog Length = 143 Score = 58.9 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDE 303 I+P +G +G G V+ + +L ++ ++IV + + V N + PA V KVV Sbjct: 41 INPESMGVAIGKNGLNVRKL-EKLINKSVEIVGYQENLEDLVKNLMSPARVKTIKVVQSN 99 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V + +AIG+ G+NV A + +DI + Sbjct: 100 SKKTVYITVEPQDKGIAIGKNGRNVERAKLILKRYLDIDS 139 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 32/54 (59%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++D+ RI +++ E + +AIG+ G NVR +L +++I+ +E+ + K Sbjct: 29 IIDDRNNRIILLINPESMGVAIGKNGLNVRKLEKLINKSVEIVGYQENLEDLVK 82 >gi|294495213|ref|YP_003541706.1| NusA family KH domain protein [Methanohalophilus mahii DSM 5219] gi|292666212|gb|ADE36061.1| NusA family KH domain protein [Methanohalophilus mahii DSM 5219] Length = 141 Score = 58.9 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--IE 309 GA +G G + + D+ +D++ +S D TF+ NA V + + G+ Sbjct: 45 GAAIGKHGDNINR-FKKAVDKHVDLIEYSDDPITFIKNAFGTIPTKSVEISDKNGKKVAY 103 Query: 310 VIVPKEQLSLAIGRRGQNV 328 V V LAIG+ G+N+ Sbjct: 104 VEVSSMNKGLAIGKSGRNI 122 >gi|320101546|ref|YP_004177138.1| NusA family KH domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753898|gb|ADV65656.1| NusA family KH domain protein [Desulfurococcus mucosus DSM 2162] Length = 148 Score = 58.5 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 12/104 (11%) Query: 248 IDP--VGACVGMRG---SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++P VG +G +G R++ ++ + I+IV +S + V AL PA + ++ L Sbjct: 45 VNPEDVGRAIGPKGFFVQRLKKILNK----NIEIVGYSSNLEEQVKYALAPARIKEIKLS 100 Query: 303 ---EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + V V +AIG+ G+NV+ A + DI + Sbjct: 101 TKPDGSKVLYVAVDPADKGIAIGKNGRNVQRARLILKRHFDIDS 144 >gi|305663639|ref|YP_003859927.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230] gi|304378208|gb|ADM28047.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230] Length = 146 Score = 58.5 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVG 306 D +G +G +G V+ + L + ++IV W + FV N PA V ++ L E D Sbjct: 47 DKLGQAIGRKGINVKYLSK-LIGKDVEIVGWGNNLEDFVKNIFMPARVQRIQLVEGRDKK 105 Query: 307 RIEVIVPKEQLSLAIGRRGQNV 328 + V V +AIG+ G+NV Sbjct: 106 IVYVYVDPRDKGIAIGKNGRNV 127 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 29/42 (69%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +++E++G + +V ++L AIGR+G NV+ S+L G ++I Sbjct: 32 IINEELGTVFFVVESDKLGQAIGRKGINVKYLSKLIGKDVEI 73 >gi|229579770|ref|YP_002838169.1| KH type 2 domain protein [Sulfolobus islandicus Y.G.57.14] gi|229581561|ref|YP_002839960.1| NusA family KH domain protein [Sulfolobus islandicus Y.N.15.51] gi|238620367|ref|YP_002915193.1| KH type 2 domain protein [Sulfolobus islandicus M.16.4] gi|284998391|ref|YP_003420159.1| KH, type 2 domain protein [Sulfolobus islandicus L.D.8.5] gi|228010485|gb|ACP46247.1| KH type 2 domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012277|gb|ACP48038.1| NusA family KH domain protein [Sulfolobus islandicus Y.N.15.51] gi|238381437|gb|ACR42525.1| KH type 2 domain protein [Sulfolobus islandicus M.16.4] gi|284446287|gb|ADB87789.1| KH, type 2 domain protein [Sulfolobus islandicus L.D.8.5] Length = 98 Score = 58.5 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 G +G G V+ + + + I++V +S + V N + PA V V + + Sbjct: 2 GVAIGKSGINVKKLRKII-GKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSVY 60 Query: 310 VIVPKEQLSLAIGRRGQNV 328 + + + LAIG+ G+NV Sbjct: 61 ISIDPQDKGLAIGKNGRNV 79 >gi|323475230|gb|ADX85836.1| KH type 2 domain protein [Sulfolobus islandicus REY15A] gi|323477962|gb|ADX83200.1| KH type 2 domain protein [Sulfolobus islandicus HVE10/4] Length = 98 Score = 58.2 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 G +G G V+ + + + I++V +S + V N + PA V V + + Sbjct: 2 GVAIGKSGINVKKLRKII-GKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSVY 60 Query: 310 VIVPKEQLSLAIGRRGQNV 328 + + + LAIG+ G+NV Sbjct: 61 INIDPQDKGLAIGKNGRNV 79 >gi|148642966|ref|YP_001273479.1| transcription elongation factor NusA-like protein [Methanobrevibacter smithii ATCC 35061] gi|148551983|gb|ABQ87111.1| transcription termination factor, NusA [Methanobrevibacter smithii ATCC 35061] Length = 143 Score = 58.2 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRI 308 G +G GS V V D+ I+IV S DS F+ N L PA V V + + Sbjct: 46 GLAIGKGGSTVSKV-QRAVDKGIEIVELSDDSIQFIKNLLSPAEVQGVKVLQKESGEKIA 104 Query: 309 EVIVPKEQLSLAIGRRGQNV---RLASQ 333 V +AIG+ G N+ +L ++ Sbjct: 105 TVTADNTNKRIAIGKNGVNIERAKLIAK 132 >gi|14591325|ref|NP_143403.1| transcription elongation factor NusA-like protein [Pyrococcus horikoshii OT3] gi|3257970|dbj|BAA30653.1| 145aa long hypothetical transcription termination-antitermination factor nusA [Pyrococcus horikoshii OT3] Length = 145 Score = 58.2 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G RG V+ V + L E ID++ S + F+ N + V +V + E Sbjct: 46 GLALGKRGINVRRVESLLGKE-IDLIEHSENPEEFIKNIYRTMG-VKVKRVHITEKKDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V AIGR G N+ + QL Sbjct: 104 KVALLDVNPRDKPRAIGRGGHNINIVRQL 132 Score = 48.1 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ + A V ++D++ R+ ++ K ++ LA+G+RG NVR L G Sbjct: 6 NTDQIKYIALFESFTGATVLDCLIDQERNRLIYVIKKGEMGLALGKRGINVRRVESLLGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 ID+I E+ K+ ++ +++ E Sbjct: 66 EIDLIEHSENPEEFIKNIYRTMGVKVKRVHITE 98 >gi|141393|sp|P29157|NUSA_THECE RecName: Full=NusA protein homolog gi|48144|emb|CAA47726.1| ORF-X [Thermococcus celer] gi|58411|emb|CAA42848.1| unnamed protein product [Thermococcus celer] Length = 145 Score = 57.8 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G +G+ V+ V + E I+++ S + F+ N +L V +V + E Sbjct: 46 GLALGKKGANVKRVQNMIGKE-IEVIEHSENPEEFLRNIYKSLG-VKVKRVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + + + AIGR GQN+ L +L Sbjct: 104 RVALLDIGPREKPRAIGRGGQNINLVKEL 132 Score = 43.5 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D F+ ++ A V ++D+ R+ ++ K ++ LA+G++G NV+ + G Sbjct: 6 NTDQIKFIALFESMTGATVLDCLIDDRRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 I++I E+ ++ + ++ +++ E Sbjct: 66 EIEVIEHSENPEEFLRNIYKSLGVKVKRVHITE 98 >gi|303244441|ref|ZP_07330776.1| NusA family KH domain protein [Methanothermococcus okinawensis IH1] gi|302485139|gb|EFL48068.1| NusA family KH domain protein [Methanothermococcus okinawensis IH1] Length = 188 Score = 57.8 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +GA +G G V+ + + +KID++ +S D FV N P + V + + + V Sbjct: 43 IGAAIGKGGENVKNAMEKF-GKKIDVIEYSSDLKKFVRNVFAPLKLEDVWIKKFGDDVVV 101 Query: 311 I--VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V + IG RG+N+ A + G DI + S R+ + + F + Sbjct: 102 YIRVHPKLRRTIIGNRGKNIDRAVNIVGRLSDIKNIKVVSEPRKNPKGKYHKKFEK 157 >gi|219852753|ref|YP_002467185.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c] gi|219547012|gb|ACL17462.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c] Length = 148 Score = 57.8 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 I+P +G +G +G+ ++ + ++I++V +S D F+ N PA V V +E Sbjct: 41 INPGEMGLAIGKKGASIKKASD-VMGKRIEVVEYSDDPEQFIKNCFLPAQVVSVEFEESE 99 Query: 306 G--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +E +AIG+ G+N+ A +L+ DI Sbjct: 100 EGPVAHVEVREEDRGIAIGKEGKNIFKAKRLSQRQHDI 137 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 31/54 (57%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V+D+ RI ++ ++ LAIG++G +++ AS + G I+++ +D K Sbjct: 29 VIDDRNERIIYVINPGEMGLAIGKKGASIKKASDVMGKRIEVVEYSDDPEQFIK 82 >gi|332157771|ref|YP_004423050.1| transcription elongation factor NusA-like protein [Pyrococcus sp. NA2] gi|331033234|gb|AEC51046.1| transcription elongation factor NusA-like protein [Pyrococcus sp. NA2] Length = 145 Score = 57.8 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---VG 306 G +G RG V+ V + E ID+V S + F+ N + V +V + E Sbjct: 46 GLALGKRGINVRRVENLIGKE-IDLVEHSDNPEEFIKNIYKTMGVKVKRVHITEKKDGKK 104 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V AIGR G N+ + QL Sbjct: 105 VALLDVNPRDKPRAIGRGGHNINIVKQL 132 Score = 45.8 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ + A V ++D++ R+ ++ K ++ LA+G+RG NVR L G Sbjct: 6 NTDQIKYIALFESFTGATVLDCLIDQERNRLIYVIKKGEMGLALGKRGINVRRVENLIGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 ID++ ++ K+ + ++ +++ E Sbjct: 66 EIDLVEHSDNPEEFIKNIYKTMGVKVKRVHITE 98 >gi|315425376|dbj|BAJ47042.1| N utilization substance protein A [Candidatus Caldiarchaeum subterraneum] gi|315426557|dbj|BAJ48187.1| N utilization substance protein A [Candidatus Caldiarchaeum subterraneum] gi|315426615|dbj|BAJ48243.1| N utilization substance protein A [Candidatus Caldiarchaeum subterraneum] Length = 144 Score = 57.4 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDED--- 304 D A +G G++++ +V R +I +V +S D++ F+ N L PA V + V + E Sbjct: 44 DLKKALMGH-GAKIKELVRIFRK-RIKVVEYSTDASVFIKNLLYPAEVIEPVRVAEKPDG 101 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V V +AIG+ G+N+ LA L +I Sbjct: 102 KKIMVVNVNPRDKGVAIGKDGKNINLARLLVKRHFNI 138 >gi|15897168|ref|NP_341773.1| transcription elongation factor NusA [Sulfolobus solfataricus P2] gi|13813357|gb|AAK40563.1| Transcription termination factor nusA homolog, putative (nusA) [Sulfolobus solfataricus P2] Length = 124 Score = 57.4 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 G +G G V+ + ++ + I++V +S + V N + PA V V + + Sbjct: 28 GVAIGKSGINVKKL-KKIIGKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSVY 86 Query: 310 VIVPKEQLSLAIGRRGQNV 328 + + + LAIG+ G+NV Sbjct: 87 INIDPQDKGLAIGKNGRNV 105 Score = 40.0 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 A V ++D + RI +V + + +AIG+ G NV+ ++ G I+++ ++ K Sbjct: 4 ANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEELVK 63 >gi|119719200|ref|YP_919695.1| NusA family protein [Thermofilum pendens Hrk 5] gi|119524320|gb|ABL77692.1| NusA family KH domain protein [Thermofilum pendens Hrk 5] Length = 149 Score = 57.4 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV--IV 312 VG GS+++ + EL + +++V FV + PA V +V + E+ R V +V Sbjct: 53 VGKNGSKIRMI-KELLRKDVEVVEDGSSLEDFVKSVFFPARVVEVKVREENNRKVVIAVV 111 Query: 313 PKEQLSLAIGRRGQNVRLASQL 334 P +QL LAIGR G+NV+ A L Sbjct: 112 PPDQLGLAIGRNGRNVQRAKIL 133 >gi|288931143|ref|YP_003435203.1| NusA family KH domain protein [Ferroglobus placidus DSM 10642] gi|288893391|gb|ADC64928.1| NusA family KH domain protein [Ferroglobus placidus DSM 10642] Length = 139 Score = 57.4 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEV 310 G +G G V+ E+ +KI+IV S D F+ N +P V ++++ V Sbjct: 44 GLAIGKGGINVEK-AKEIIGKKIEIVEHSEDPEEFIKNIFKPINVRVKIINKGGKKVAHV 102 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P + IG+ G+N+ A +L DI Sbjct: 103 YAPLQYKGFVIGKGGKNINKAKELVRRHHDI 133 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +L A V ++ ++ ++V K + LAIG+ G NV A ++ G I+I+ ED Sbjct: 18 SLTGANVKDCLI--YDDKVVLVVRKGDMGLAIGKGGINVEKAKEIIGKKIEIVEHSEDPE 75 Query: 350 NRQKDFNERTQFFMQAIN 367 K+ + ++ IN Sbjct: 76 EFIKNIFKPINVRVKIIN 93 >gi|284174414|ref|ZP_06388383.1| transcription elongation factor NusA [Sulfolobus solfataricus 98/2] Length = 119 Score = 57.4 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 G +G G V+ + ++ + I++V +S + V N + PA V V + + Sbjct: 23 GVAIGKSGINVKKL-KKIIGKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSVY 81 Query: 310 VIVPKEQLSLAIGRRGQNV 328 + + + LAIG+ G+NV Sbjct: 82 INIDPQDKGLAIGKNGRNV 100 Score = 37.4 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 29/54 (53%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 ++D + RI +V + + +AIG+ G NV+ ++ G I+++ ++ K Sbjct: 5 IIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEELVK 58 >gi|170291133|ref|YP_001737949.1| NusA family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175213|gb|ACB08266.1| NusA family KH domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 158 Score = 57.0 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 11/98 (11%) Query: 252 GACVGMRGSRVQAVVTELRDE---KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG-- 306 G VG G +++A+ L+ + I++V + F+ N L PA V KV + Sbjct: 50 GRAVGRGGRKLKAMKRFLKGDLDYDIEVVEFDDSPEGFIANLLSPARVQKVKIVHQDDGI 109 Query: 307 RIEVIVPKEQLSLAIGRRGQNVR----LASQLTGWTID 340 V E SLAIGR G+ ++ LA + + ID Sbjct: 110 TAIAYVLDEDKSLAIGRNGRRIKRTRLLAKRW--YDID 145 >gi|261601835|gb|ACX91438.1| NusA family KH domain protein [Sulfolobus solfataricus 98/2] Length = 143 Score = 57.0 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 G +G G V+ + ++ + I++V +S + V N + PA V V + + Sbjct: 47 GVAIGKSGINVKKL-KKIIGKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSVY 105 Query: 310 VIVPKEQLSLAIGRRGQNV 328 + + + LAIG+ G+NV Sbjct: 106 INIDPQDKGLAIGKNGRNV 124 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 A V ++D + RI +V + + +AIG+ G NV+ ++ G I+++ ++ K Sbjct: 23 ANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEELVK 82 >gi|332796428|ref|YP_004457928.1| transcription elongation factor NusA-like protein [Acidianus hospitalis W1] gi|332694163|gb|AEE93630.1| transcription elongation factor NusA-like protein [Acidianus hospitalis W1] Length = 130 Score = 57.0 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNV 328 I+IV +S + V N + PA V V + ++ + + V + +AIG+ G+NV Sbjct: 55 IEIVAYSDNLEDMVKNLMSPARVRSVKVIDNDSKKTVYITVDPQDKGIAIGKSGKNV 111 >gi|300712254|ref|YP_003738068.1| transcription elongation factor NusA-like protein [Halalkalicoccus jeotgali B3] gi|299125937|gb|ADJ16276.1| transcription elongation factor NusA-like protein [Halalkalicoccus jeotgali B3] Length = 139 Score = 56.6 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 S+ +G +G G V + L +D+V + FV NAL PA V V + E+ Sbjct: 39 SVGEMGQAIGPGGKTVSRLEERLNA-TVDLVEDADTPEAFVANALSPAAVYHVTISENDT 97 Query: 307 RIEVI-VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V ++ +AIG G+N+ A L D+ Sbjct: 98 LVAYAEVAEDDRGVAIGTGGKNIETARTLAKRHFDL 133 >gi|240103979|ref|YP_002960288.1| transcription elongation factor NusA-like protein [Thermococcus gammatolerans EJ3] gi|239911533|gb|ACS34424.1| Transcription termination-antitermination factor, NusA-like protein (nusA) [Thermococcus gammatolerans EJ3] Length = 145 Score = 56.6 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G +G+ V+ V + + I+++ S + F+ N +L V K+ + E Sbjct: 46 GLALGKKGANVKRVQN-MIGKDIELIEHSENPEEFLRNIYKSLG-VKVKKIHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + + + AIGR GQN+ L QL Sbjct: 104 KVALLDISPREKPRAIGRGGQNINLVKQL 132 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ ++ A V ++D + R+ ++ K ++ LA+G++G NV+ + G Sbjct: 6 NTDQIKYIALFESMTGATVLDCLIDANRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 I++I E+ ++ + ++ I++ E Sbjct: 66 DIELIEHSENPEEFLRNIYKSLGVKVKKIHITE 98 >gi|34558836|gb|AAQ75180.1| 30S ribosomal protein S1 [Alvinella pompejana epibiont 7G3] Length = 556 Score = 56.2 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 29/218 (13%) Query: 21 SIDRDVV-LSVMADSIQKAARSLYGTMSDIR---VEINPETGDISLFRLLEVVEEVENYT 76 I+ + V M ++++ + + V+IN + VV+ Sbjct: 7 DIEVEDVDFEAM---LEESFKKRDTNNDLVEGTIVKINEAENQV-------VVDIGRKNE 56 Query: 77 CQISLKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +SL RD D +I +IG + + + RV++ + +K R A + E+ Sbjct: 57 AIMSLDQIRDEDGNIMFNIGDTIPVVITKRNGERVSISY---ELAEK-RIALSEFI-DEY 111 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR--DETISRENLRPGDRVKSYIYDVRRE 192 D+ I+ G + R G +VD+ + + + + N G RVK+ I V ++ Sbjct: 112 DDEEEYIVEGVIVRKNRGGFVVDVSGLEFFMPKTLSYISPKINP-IGKRVKALIVKVDKD 170 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 ++ V++SR +++ E+ EI + ++ KAV Sbjct: 171 KQ--SVIVSRKD---LIEREKKEIQEIVDKLLTDKAVV 203 >gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus carboxydivorans Nor1] gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus carboxydivorans Nor1] Length = 655 Score = 55.8 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 11/105 (10%) Query: 109 VAVQSAKQVII---QKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDG 163 + + AKQ I+ +KV E E+ R+ E + G+I++GTV R+ V VDLG DG Sbjct: 428 IEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLGGVDG 487 Query: 164 VIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 +I + E + GD V+ ++ V + + + L R Sbjct: 488 LIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKR 532 >gi|159040907|ref|YP_001540159.1| transcription elongation factor NusA-like protein [Caldivirga maquilingensis IC-167] gi|157919742|gb|ABW01169.1| NusA family KH domain protein [Caldivirga maquilingensis IC-167] Length = 148 Score = 55.8 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGRIEVI 311 VG G V+ + L + ++IV + D + NAL PA V + ++ + + Sbjct: 54 VGKGGINVKKL-KNLLGKDVEIVEYGDDPEELLRNALYPAKVVNITINKLPNNGKVAIIR 112 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + + +A+G+ +N++ A+ L DI Sbjct: 113 VEEGEKGIALGKYHRNLKRAALLAKRYFDI 142 >gi|124485200|ref|YP_001029816.1| aminotransferase, class I and II [Methanocorpusculum labreanum Z] gi|124362741|gb|ABN06549.1| NusA family KH domain protein [Methanocorpusculum labreanum Z] Length = 157 Score = 55.8 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 248 IDP--VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 I+P +G +G +G+ ++ +K+++V ++PD F+ N P V V +ED Sbjct: 41 INPGEMGLAIGKKGASIKKASDAF-GKKVEVVEYNPDKVQFIRNCFLPVHVQTVTFEEDE 99 Query: 306 GR----IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V LAIG+ G+N+ A +L DI E Sbjct: 100 EENTEVAYIEVADTDRGLAIGKEGRNIIKAKKLAFRQFDIANVE 143 >gi|294670566|ref|ZP_06735445.1| hypothetical protein NEIELOOT_02288 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307691|gb|EFE48934.1| hypothetical protein NEIELOOT_02288 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 63 Score = 55.8 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 24/35 (68%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+LQ+A+A+A EK++D DVV + ++ AA+ Sbjct: 4 EMLQLAEALASEKNVDTDVVFDALEFALSTAAKKK 38 >gi|242398383|ref|YP_002993807.1| NusA like protein [Thermococcus sibiricus MM 739] gi|242264776|gb|ACS89458.1| NusA like protein [Thermococcus sibiricus MM 739] Length = 145 Score = 55.5 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDEDV---G 306 G +G RGS V+ V + + I+++ S + F+ N + V KV + E Sbjct: 46 GLALGKRGSNVKRV-QSMIGKDIELIEHSENPEEFIKNIYKTMGVRVKKVHITEKKNGKK 104 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V + AIG+ GQN+ L +L Sbjct: 105 VALLDVNQRDKPRAIGKGGQNINLVKEL 132 Score = 44.3 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ +L A V ++D R+ ++V ++ LA+G+RG NV+ + G Sbjct: 6 NTDQIKYIALFESLTGATVLDCLIDTIKNRLVIVVKNGEMGLALGKRGSNVKRVQSMIGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 I++I E+ K+ + ++ +++ E Sbjct: 66 DIELIEHSENPEEFIKNIYKTMGVRVKKVHITE 98 >gi|332203718|gb|EGJ17785.1| nusA N-terminal domain protein [Streptococcus pneumoniae GA47368] Length = 76 Score = 55.1 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPE 56 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N + Sbjct: 2 SKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEK 52 >gi|312972558|ref|ZP_07786731.1| transcription elongation nusA domain protein [Escherichia coli 1827-70] gi|310332500|gb|EFP99713.1| transcription elongation nusA domain protein [Escherichia coli 1827-70] gi|323173570|gb|EFZ59199.1| transcription elongation protein nusA domain protein [Escherichia coli LT-68] Length = 62 Score = 54.7 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKN 38 >gi|333000299|gb|EGK19882.1| transcription elongation protein nusA domain protein [Shigella flexneri K-218] Length = 62 Score = 54.7 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKN 38 >gi|88602084|ref|YP_502262.1| NusA family protein [Methanospirillum hungatei JF-1] gi|88187546|gb|ABD40543.1| NusA family KH domain protein [Methanospirillum hungatei JF-1] Length = 147 Score = 54.7 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G +G ++ + + K+++V ++ D F+ N +PA V + D+ ++ + Sbjct: 46 GYAIGKKGDNIRRL-QGVTGRKVEMVEYAEDLQEFLSNIFKPAQVIRFACDDQTKKMNIY 104 Query: 312 VPK-EQLSLAIGRRGQNVRLASQLT----GWTI-DIITEEEDS 348 V + +AIG+ G + A L G+ I ++ EE + Sbjct: 105 VSDKNDVGIAIGKGGCTIEKARILIRRFHGYEIGEVFPEESAA 147 >gi|76800714|ref|YP_325722.1| transcription elongation factor NusA-like protein [Natronomonas pharaonis DSM 2160] gi|76556579|emb|CAI48150.1| transcription elongation factor nusA [Natronomonas pharaonis DSM 2160] Length = 141 Score = 54.7 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G G V V +++ + ++ + +A FV NAL PA V V + E+ + Sbjct: 46 GQAIGPGGDHVATVESKV-GRDVTVIEGAETAADFVANALAPAAVYNVTISENDTTVAYA 104 Query: 312 -VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + +AIG G+N+ LA +L DI Sbjct: 105 EVDENDRGVAIGADGRNIDLARRLADRHFDI 135 >gi|126179721|ref|YP_001047686.1| NusA family protein [Methanoculleus marisnigri JR1] gi|125862515|gb|ABN57704.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] Length = 146 Score = 54.3 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G +GS ++ + + ++I++V +SP F N +PA V V D G++ V Sbjct: 46 GLAIGRKGSNIRK-MQRVLGKRIEMVEYSPQIEQFAKNVFKPADVVGVA-KGDNGKLAVY 103 Query: 312 VPKEQLSLAIGRRG 325 + + L +AIG+ G Sbjct: 104 INQNDLGIAIGKGG 117 Score = 37.0 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A ++DE RI ++ + + LAIGR+G N+R ++ G I++ Sbjct: 22 ATALDCIIDERFDRIVYLIKEGDMGLAIGRKGSNIRKMQRVLGKRIEM 69 >gi|124028423|ref|YP_001013743.1| putative transcription elongation factor [Hyperthermus butylicus DSM 5456] gi|123979117|gb|ABM81398.1| putative transcription elongation factor [Hyperthermus butylicus DSM 5456] Length = 143 Score = 54.3 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--IE 309 G +G RG+ + + L E I+++ + D V N PA V + L + GR + Sbjct: 47 GKAIGRRGANINKLRRLLGKE-IEVIEHADDLEAMVKNIFAPARVLGIRLAQRNGRKILY 105 Query: 310 VIVPKEQLSLAIGRRGQNVRLA 331 V V AIG+ G+ V +A Sbjct: 106 VTVDPNDKGRAIGKGGRKVNIA 127 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 L A+ ++D + RI IV AIGRRG N+ +L G I++I +D Sbjct: 20 LTGAVARDCIIDNENNRIIFIVRPGDAGKAIGRRGANINKLRRLLGKEIEVIEHADDLEA 79 Query: 351 RQKDF 355 K+ Sbjct: 80 MVKNI 84 >gi|18977932|ref|NP_579289.1| transcription elongation factor NusA-like protein [Pyrococcus furiosus DSM 3638] gi|18893702|gb|AAL81684.1| transcription termination-antitermination factor nusa [Pyrococcus furiosus DSM 3638] Length = 145 Score = 54.3 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVTKVVLDED---V 305 G +G G V+ + L ++ID+V S + F+ N + V KV + E Sbjct: 46 GLALGRGGINVRRI-EGLIGKEIDLVEHSENPEEFIKNIYRTMG-VKVKKVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 + V AIGR G+N+ + QL Sbjct: 104 KVALLDVNPRDKPRAIGRGGRNINIVKQL 132 Score = 45.4 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 280 SPDSATFVI--NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 + D ++ + A V ++D++ ++ ++ K ++ LA+GR G NVR L G Sbjct: 6 TTDQIKYIALFESFTGATVLDCLIDQERNKLIYVIKKGEMGLALGRGGINVRRIEGLIGK 65 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 ID++ E+ K+ ++ +++ E Sbjct: 66 EIDLVEHSENPEEFIKNIYRTMGVKVKKVHITE 98 >gi|15791386|ref|NP_281210.1| transcription elongation factor NusA-like protein [Halobacterium sp. NRC-1] gi|169237147|ref|YP_001690347.1| transcription elongation factor NusA-like protein [Halobacterium salinarum R1] gi|139955|sp|P15739|NUSA_HALSA RecName: Full=NusA protein homolog gi|43544|emb|CAA40428.1| ORF 139 [Halobacterium salinarum] gi|10582041|gb|AAG20690.1| transcription termination-antitermination factor [Halobacterium sp. NRC-1] gi|167728213|emb|CAP15001.1| putative transcription termination factor nusA [Halobacterium salinarum R1] Length = 139 Score = 54.3 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GA +G GSRV A+ L + +V +P + FV NAL PA V V + E+ + Sbjct: 44 GAAIGDGGSRVDALEATLGRSVV-LVEDAPTAEGFVANALSPAAVYNVTVSENDTTVAYA 102 Query: 312 -VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V E +AIG G N+ A +L DI Sbjct: 103 EVAHEDKGVAIGADGTNIETAKELAARHFDI 133 >gi|146302822|ref|YP_001190138.1| transcription elongation factor NusA-like protein [Metallosphaera sedula DSM 5348] gi|145701072|gb|ABP94214.1| NusA family KH domain protein [Metallosphaera sedula DSM 5348] Length = 143 Score = 53.9 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 276 IVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 +V +S + + N + PA V V + + V V + ++AIG+ G+NV A Sbjct: 70 VVAYSENLEDLIKNLMSPARVKSVKTIDSNSRKTVHVTVDPQDKAIAIGKAGRNVSRAKI 129 Query: 334 LTGWTIDIIT 343 + +DI + Sbjct: 130 ILKRYMDIDS 139 >gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 696 Score = 53.9 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 8/108 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + D + + +++ ++QK + RD Y + K G+II GTV+R+ Sbjct: 421 IGEEFETEIIDFDKRKRRIVLSRKNVLQKELDKVRDEVYDKLK--EGDIIEGTVQRLTNF 478 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 VD+G DG+I E + + PGD VK + +V +E+ Sbjct: 479 GAFVDVGGVDGLIHISELSWNRVKHPSDVVAPGDVVKVQVLNVDKEKN 526 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 128 DRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPG 179 + FK + GE+++G V + V+V+LG SDG+I RDE ++ G Sbjct: 279 EAIENSFKRIRRGEVVTGEVLYITDSEVMVNLGYRSDGIISRDELAGGPDVNPQDLYEQG 338 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 + Y+ + V+LS Sbjct: 339 QEIDVYVLKMDDGDGN--VVLS 358 >gi|110669266|ref|YP_659077.1| transcription elongation factor NusA-like protein [Haloquadratum walsbyi DSM 16790] gi|109627013|emb|CAJ53489.1| transcription elongation factor nusA [Haloquadratum walsbyi DSM 16790] Length = 140 Score = 53.9 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIE 309 G +G G V+AV ++ +++V + + FV NAL PA V V + E Sbjct: 44 GTAIGPGGKHVRAVEDDI-GTTVELVEDAETARAFVENALAPAAVRHVTISEQGGECVAY 102 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLT--GWTID 340 V +P +AIG G+N+ A +L + ID Sbjct: 103 VEIPDPDRGIAIGADGKNIHTARKLVRRHYEID 135 >gi|154151612|ref|YP_001405230.1| NusA family protein [Candidatus Methanoregula boonei 6A8] gi|154000164|gb|ABS56587.1| NusA family KH domain protein [Methanoregula boonei 6A8] Length = 147 Score = 53.5 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G +G ++ + L +I++V ++ D F+ N +PA V + + G + V+ Sbjct: 46 GLAIGKKGENIKRLQNVL-GRRIEMVEYAEDPVLFITNIFKPAEVIGIERGAEEGPVNVL 104 Query: 312 V-PKEQLSLAIGRRGQNV 328 V K L +AIG+ G N+ Sbjct: 105 VNKKSDLGIAIGKAGCNI 122 >gi|322369997|ref|ZP_08044559.1| transcription elongation factor NusA-like protein [Haladaptatus paucihalophilus DX253] gi|320550333|gb|EFW91985.1| transcription elongation factor NusA-like protein [Haladaptatus paucihalophilus DX253] Length = 142 Score = 53.5 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G G V++V +L + +++V + + FV+NAL PA V V + E+ + Sbjct: 47 GQAIGPGGKHVRSVEEQLGAD-VELVEDADEPDRFVVNALAPAEVRHVTISENDDTVAYA 105 Query: 312 -VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V ++ +AIG G+N+ A L D+ Sbjct: 106 EVAQQDTGVAIGTDGRNIEAAKLLVSRHFDV 136 >gi|55379093|ref|YP_136943.1| transcription elongation factor NusA-like protein [Haloarcula marismortui ATCC 43049] gi|55231818|gb|AAV47237.1| transcription termination factor NusA [Haloarcula marismortui ATCC 43049] Length = 141 Score = 53.5 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G G V+ V L E + +V + + FV NAL PA V V + E+ V V Sbjct: 49 IGPGGQTVERVEERLGRE-VKLVEAAETAEDFVANALAPAAVYNVTVSENDDTVAYVEVA 107 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +E AIGR G+N+ A QL +I Sbjct: 108 QEDRGAAIGREGRNIDAARQLAKRHFEI 135 >gi|327311712|ref|YP_004338609.1| transcription elongation factor NusA-like protein [Thermoproteus uzoniensis 768-20] gi|326948191|gb|AEA13297.1| transcription elongation factor NusA-like protein [Thermoproteus uzoniensis 768-20] Length = 144 Score = 53.1 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVI 311 VG G+ V+ + + +++V ++ + N+L PA V V + + Sbjct: 50 VGKGGNNVRMLRQII-GRDVEVVEYAETPEELIKNSLYPARVIAVKVTKSPSGNLVAITT 108 Query: 312 VPKEQLSLAIGRRGQNV 328 V E LAIG+ G+N+ Sbjct: 109 VVPEDKGLAIGKNGRNI 125 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++ VV+D D RI +V K Q +LA+G+ G NVR+ Q+ G ++++ E Sbjct: 19 SMTGVTPLDVVVDSDYNRIIFVVGKNQAALAVGKGGNNVRMLRQIIGRDVEVVEYAETPE 78 Query: 350 NRQK 353 K Sbjct: 79 ELIK 82 >gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 52.8 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 +RD + +G + + + R + +++I+ + + + + K VG+II GT Sbjct: 140 ERDLNKYLGQEIEFKITEFNPRRRRIIGNRKMILVERKSEIQKDLLEKLK--VGDIIEGT 197 Query: 146 VKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVL 199 +K + VDLG DG++ E R+ D+V+ +I ++ G ++ Sbjct: 198 IKNITDFGAFVDLGGIDGLLHISEMSWGRVENPRKVFNVDDKVRVFIKEI----NGTKIA 253 Query: 200 LSR 202 LSR Sbjct: 254 LSR 256 >gi|330833904|ref|YP_004408632.1| transcription elongation factor NusA-like protein [Metallosphaera cuprina Ar-4] gi|329566043|gb|AEB94148.1| transcription elongation factor NusA-like protein [Metallosphaera cuprina Ar-4] Length = 143 Score = 52.8 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 276 IVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 +V +S + V N + PA V V + + V V + ++AIG+ G+NV A Sbjct: 70 VVAYSDNLEDLVKNLMSPARVRSVKTIDSNSRKTVHVSVDPQDKAIAIGKAGRNVSRAKI 129 Query: 334 LTGWTIDIIT 343 + +DI + Sbjct: 130 ILKRYMDIDS 139 >gi|58584320|ref|YP_197893.1| 30S ribosomal protein S1 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418636|gb|AAW70651.1| Ribosomal protein S1 [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 550 Score = 52.8 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLE-FKDK--VGEIISGTVKRVEYGNVIVDLG 159 P+ +++ + I Q E + + + + F +K G+++ G + RV +++V +G Sbjct: 11 PISIRKLSSNKFIEEICQDQFEDQDNALFEDSFINKIKEGDVVEGIITRVNPNDIVVHIG 70 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 SDG I E + + G +++ Y+ + V+LSR Sbjct: 71 LKSDGRIPIKELGCNDKIVVGSKIRVYVERIEDYHGN--VVLSR 112 >gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium HF0200_09I09] Length = 677 Score = 52.8 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 13/154 (8%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 +G + + ++ R +++ +Q+ R +++R E GE+ GTV + Sbjct: 238 QVGRELRMKVIEINRRRNRAILSERAAMQEWRAEQKERLLGELA--EGEVRKGTVTSIRN 295 Query: 152 GNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 V VDLG +DG+ E + + G + YI + R+ + + + R P Sbjct: 296 FGVFVDLGGADGLAHLSELSWDRNADPEQLFQVGQDIDVYIMRIDRDSKKIALSVRRAAP 355 Query: 206 QFMVKLFHME-----VPEIYNGIVQVKAVSRDPG 234 + L VP I +V A +R PG Sbjct: 356 EQWQDLISQYEVGDVVPGIVTKVVAFGAFTRLPG 389 >gi|150401215|ref|YP_001324981.1| transcription elongation factor NusA-like protein [Methanococcus aeolicus Nankai-3] gi|150013918|gb|ABR56369.1| NusA family KH domain protein [Methanococcus aeolicus Nankai-3] Length = 184 Score = 52.4 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +GA +G G V+ + ++ID+V +S D FV N L P + V + + + V Sbjct: 43 IGAAIGKGGENVRNATEKF-GKRIDVVEYSTDLKQFVRNLLAPLKLDDVWVKKYNDDLVV 101 Query: 311 IVPKE-QLSLAI-GRRGQNV 328 V +L +I G RG+N+ Sbjct: 102 YVRVHPKLRKSIVGDRGKNI 121 Score = 37.0 bits (85), Expect = 8.5, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 A V + D+ RI IV + + AIG+ G+NVR A++ G ID++ D + Sbjct: 22 AEVMDCISDD--ERIIFIVKEGDIGAAIGKGGENVRNATEKFGKRIDVVEYSTDLKQFVR 79 >gi|330508608|ref|YP_004385036.1| DNA repair and recombination protein RadA [Methanosaeta concilii GP-6] gi|328929416|gb|AEB69218.1| DNA repair and recombination protein RadA [Methanosaeta concilii GP-6] Length = 325 Score = 52.4 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 12/104 (11%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY-- 416 + V A L GF +E +A E+ S E TA +I ARE Sbjct: 3 IKLLEDLPGVGPATAEKLREAGFNSIEAIAVASPGELVSAAEVGEATAAKIIAGAREAAD 62 Query: 417 ---LEGIDITLQKKIRELGVS------EELCSIPGIDSKIKVAL 451 E D L+++ + V+ +EL G++++ V L Sbjct: 63 VGGFETGDRILERRKQVGKVTTSCKSFDELLG-GGMETQAIVEL 105 >gi|145592519|ref|YP_001154521.1| transcription elongation factor NusA-like protein [Pyrobaculum arsenaticum DSM 13514] gi|145284287|gb|ABP51869.1| NusA family KH domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 144 Score = 52.4 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVI 311 VG GS V+ + + + ++IV + N+L PA V V + + Sbjct: 50 VGKGGSNVKMLRQ-IVGKDVEIVEAGDTPEELIKNSLYPAKVIMVKVTKAPSGAKVAITT 108 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTG--WTID 340 V E +AIG+ G+N+ A L + ID Sbjct: 109 VAPEDKGIAIGKNGKNIARAKLLAKRYYDID 139 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 27/45 (60%) Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VV+D R+ +V K Q +LA+G+ G NV++ Q+ G ++I Sbjct: 26 IDVVIDNAYSRVIYVVQKNQAALAVGKGGSNVKMLRQIVGKDVEI 70 >gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus fer1] Length = 335 Score = 52.4 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%) Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 I + E++ + + V E A L G+ D+ +A ++A Sbjct: 2 NIKMAKEKKIDDELDSELENKKLTIEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLAD 61 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 I G E AV+I AR+Y + + ++I Sbjct: 62 ISGIAEGAAVKIINAARKYADVGNFETGEEI 92 >gi|161527861|ref|YP_001581687.1| NusA family protein [Nitrosopumilus maritimus SCM1] gi|160339162|gb|ABX12249.1| NusA family KH domain protein [Nitrosopumilus maritimus SCM1] Length = 154 Score = 52.4 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 10/98 (10%) Query: 252 GACVGMRGSRV---QAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDV 305 G +G G + Q +V +++V + D A F+ N L +V++V ++ + Sbjct: 48 GLAIGKGGMHIKSLQNIVKR----NVELVEFDEDPAKFLSNLLNSKLVSEVKINTRADGT 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + V+V + + +GR G+N A L DI + Sbjct: 104 KQAIVMVDPRKKGIVVGREGRNAEKARMLAKRYFDITS 141 >gi|268323375|emb|CBH36963.1| putative NusA protein homolog [uncultured archaeon] Length = 139 Score = 52.0 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGRI 308 G +G GS + V +R + I++V S D+ F+ N RPA + V L D Sbjct: 42 GLAIGKGGSNITKVKNMVRKD-IEVVEHSTDAKEFIENLFRPAEIKSVELLTDDNGKSCA 100 Query: 309 EVIVPKEQLSLAIGRRGQNVR 329 V V +Q +AIG+ G+ ++ Sbjct: 101 YVAVLTKQKGIAIGKNGERIK 121 >gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198] gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198] Length = 529 Score = 52.0 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 19/143 (13%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 G ++ + R +V K + QK++E + ++KDK +I + R Sbjct: 53 FQEGDKITVYVSRGGHDRFSVSHKKVLRHQKIQE-KIQSLGEDYKDK---VIEAKIIRKN 108 Query: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRT------- 203 G VI++ + + + ++E+ G RV+ I +V+ E+ +++SR Sbjct: 109 KGGVILEADGVEYFMPKFHASAKED--KGKRVEVCIINVKPEEN--SIIVSRKRFFDLVN 164 Query: 204 --HPQFMVKLFHMEVPEIYNGIV 224 H + K+ ++ P +G+V Sbjct: 165 RNHSESAKKIMEIQSP--LDGVV 185 >gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei Go1] gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1] Length = 367 Score = 51.6 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +F + V A L GF +E +A SE+A+ E TA +I A Sbjct: 40 EFVMSEIALEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAA 99 Query: 414 REYLE 418 R+ + Sbjct: 100 RQAAD 104 >gi|327280164|ref|XP_003224823.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Anolis carolinensis] Length = 339 Score = 51.6 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 + +ID+ TEEE + + Q + A +V L GF VE +A E Sbjct: 7 SDTSIDVSTEEES--FGPQQISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKE 59 Query: 395 IASIEGFDEETAVEIQGRA 413 + +I+G E A +I A Sbjct: 60 LLNIKGISEAKADKILAEA 78 >gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum hungatei JF-1] gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum hungatei JF-1] Length = 407 Score = 51.6 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 8/117 (6%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--- 411 T V A L G+ VE++A +E+ E TA ++ Sbjct: 1 MAAETYKLEDIPGVGPTTAEKLREAGYESVEKIAQATATELYDTAEIGEATARKMIKWCT 60 Query: 412 -----RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 A + + ++ IPG+ I L + G T+E +A Sbjct: 61 SQINPGAEGSTDASSAQKEDSTHMQQRRLDIEDIPGVGPAIAEKLRDAGFLTVESIA 117 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 +R V IA L GF VE +A + +A E Sbjct: 74 SSAQKEDSTHMQQRRLDIEDIPGVGPAIAEKLRDAGFLTVESIATSLPATLAEAAELGEA 133 Query: 405 TAVEIQGRARE 415 TA ++ R+ Sbjct: 134 TAKKMIKWCRD 144 >gi|311977685|ref|YP_003986805.1| DNA ligase [Acanthamoeba polyphaga mimivirus] gi|82000023|sp|Q5UPZ0|DNLJ_MIMIV RecName: Full=DNA ligase; AltName: Full=NAD-dependent DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55416925|gb|AAV50575.1| NAD-dependent DNA ligase [Acanthamoeba polyphaga mimivirus] gi|308204745|gb|ADO18546.1| DNA ligase [Acanthamoeba polyphaga mimivirus] Length = 636 Score = 51.6 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 12/100 (12%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 + G N+ LA DI E I R F A N+ E I LV GF Sbjct: 386 KNGVNIILA--------DINDNETVIIKRLTKFMRNIG----AENISEGITTRLVEAGFD 433 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++ + + +I+GF E A +I + L+ +DI Sbjct: 434 TIPKIINMTEEDFLTIDGFQERLAEKIYNNLQNSLDNLDI 473 >gi|91773155|ref|YP_565847.1| transcription elongation factor NusA-like protein [Methanococcoides burtonii DSM 6242] gi|91712170|gb|ABE52097.1| Transcription termination factor NusA [Methanococcoides burtonii DSM 6242] Length = 141 Score = 51.2 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 252 GACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 GA +G G + V +L +K I+++ +S + TF+ NA V V + D Sbjct: 45 GAAIGKCGDNLNRV--KLSVDKHIELIEYSAEPVTFIKNAFGTVSVRSVRISSKGDKNIA 102 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 V V + LAIGR G N+ Sbjct: 103 YVDVAANEKGLAIGRNGSNI 122 >gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5] Length = 315 Score = 51.2 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + V IA L GF +E +A +E+ + E T+ +I ARE E Sbjct: 5 ELPGVGPAIAEKLREAGFNSLEAIAVASPAELVAAAEIGEATSAKIINAAREAAE 59 >gi|14601671|ref|NP_148212.1| transcription elongation factor NusA-like protein [Aeropyrum pernix K1] gi|85544478|pdb|2CXC|A Chain A, Crystal Structure Of Archaeal Transcription Termination Factor Nusa gi|88192683|pdb|2CY1|A Chain A, Crystal Structure Of Ape1850 gi|5105541|dbj|BAA80854.1| NusA protein homolog [Aeropyrum pernix K1] Length = 144 Score = 50.8 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIE 309 G +G RG R+ ++ E + I++V +S D V N + + + E ++ Sbjct: 48 GRAIG-RGGRLIKLLREALGKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVV 106 Query: 310 VIVPKEQLSLAIGRRGQNVRLA 331 + V ++ AIG+ G+NV+ A Sbjct: 107 IKVSEDDKGAAIGKGGKNVKRA 128 >gi|119872213|ref|YP_930220.1| transcription elongation factor NusA-like protein [Pyrobaculum islandicum DSM 4184] gi|119673621|gb|ABL87877.1| NusA family KH domain protein [Pyrobaculum islandicum DSM 4184] Length = 144 Score = 50.8 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVI 311 VG GS V+ + L + ++IV + N+L PA V V + + Sbjct: 50 VGRGGSNVKMLKQIL-GKDVEIVEGGDTPEELIKNSLYPAKVIMVKVTKSPSGSKVAITT 108 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTG--WTID 340 V E +AIG+ G+N+ A L + ID Sbjct: 109 VAPEDKGIAIGKNGRNIARARILAKRYYDID 139 Score = 37.7 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 28/45 (62%) Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VVLD + RI +V K Q +LA+GR G NV++ Q+ G ++I Sbjct: 26 IDVVLDNEYSRIIFVVQKNQAALAVGRGGSNVKMLKQILGKDVEI 70 >gi|254169028|ref|ZP_04875866.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|254169225|ref|ZP_04876059.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|289596762|ref|YP_003483458.1| NusA family KH domain protein [Aciduliprofundum boonei T469] gi|197621821|gb|EDY34402.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|197621998|gb|EDY34575.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|289534549|gb|ADD08896.1| NusA family KH domain protein [Aciduliprofundum boonei T469] Length = 141 Score = 50.8 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKE 315 GS++Q V L + + +V +SPD F N V + ++ I V V Sbjct: 51 NGSKIQTVRN-LIKKNVMVVEYSPDIVVFTKNIFHRFHVKNIKVENVDNQFSITVFVDPR 109 Query: 316 QLSLAIGRRGQNVRLASQL 334 + AIG+ G+N++LA ++ Sbjct: 110 DKARAIGKEGRNLKLAKEI 128 >gi|307256659|ref|ZP_07538438.1| hypothetical protein appser10_6620 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864707|gb|EFM96611.1| hypothetical protein appser10_6620 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 47 Score = 50.8 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 19/37 (51%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L A+AV+ EK + ++ + + ++ + + Sbjct: 2 SKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKK 38 >gi|167042228|gb|ABZ06960.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_ANIW93I24] Length = 154 Score = 50.4 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGRI 308 G +G GS ++++ L+ +++V + D F+ N L P V +V LD + + Sbjct: 48 GLAIGKGGSNIKSLQNILKR-NVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQA 106 Query: 309 EVIVPKEQLSLAIGRRGQN---VRLASQ 333 +IV + L +GR G+N RL ++ Sbjct: 107 TIIVDHGKKGLVVGRDGRNAEKARLFAK 134 >gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum] Length = 475 Score = 50.4 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L+ RD D IG + + M+ R + +++V++++ R+ + Sbjct: 40 PGSQIDLRPVRDMDRL--IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 97 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K GEI+ G VK + +DLG DG++ + +E + GD+V + Sbjct: 98 K--EGEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLK 155 Query: 189 VRREQ 193 +E Sbjct: 156 HDKET 160 >gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.14.25] gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus L.S.2.15] gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.G.57.14] gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.N.15.51] gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.27] gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.4] gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus L.D.8.5] gi|259551812|sp|C3MZK6|RADA_SULIA RecName: Full=DNA repair and recombination protein radA gi|259551815|sp|C4KIT6|RADA_SULIK RecName: Full=DNA repair and recombination protein radA gi|259551818|sp|C3MRI1|RADA_SULIL RecName: Full=DNA repair and recombination protein radA gi|259551822|sp|C3MY77|RADA_SULIM RecName: Full=DNA repair and recombination protein radA gi|259551825|sp|C3NFU5|RADA_SULIN RecName: Full=DNA repair and recombination protein radA gi|259551829|sp|C3N7M8|RADA_SULIY RecName: Full=DNA repair and recombination protein radA gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus L.S.2.15] gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.14.25] gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.G.57.14] gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.N.15.51] gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.27] gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.4] gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus L.D.8.5] gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus REY15A] gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus HVE10/4] Length = 324 Score = 50.4 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + + + + + + L+ G++ +E LA +++ G TA +I A Sbjct: 6 EQKKSIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 Query: 414 REYLEGIDITLQKKIRE 430 R+ L+ T + +E Sbjct: 66 RDALDIRFKTALEVKKE 82 >gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon] gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon] Length = 315 Score = 50.4 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + V IA L GF +E +A E+ + E TA +I ARE + Sbjct: 5 ELPGVGPAIAEKLREAGFNSLEAIAVASPMELVATTEIGEATASKIITAAREAADIGGFE 64 Query: 424 LQKKIRE 430 KI E Sbjct: 65 TGDKILE 71 >gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus P2] gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus 98/2] gi|14286170|sp|Q55075|RADA_SULSO RecName: Full=DNA repair and recombination protein radA gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2] gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus 98/2] Length = 324 Score = 50.4 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + + + + + + L+ G++ +E LA +++ G TA +I A Sbjct: 6 EQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 Query: 414 REYLEGIDITLQKKIRE 430 R+ L+ T + +E Sbjct: 66 RDALDIRFKTALEVKKE 82 >gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG'] Length = 591 Score = 50.4 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 24/185 (12%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRV-EINPETGDISLFRLLEVVEEVEN 74 ++ EK+ DR V + + + I I+ G +++ +V + Sbjct: 109 LSKEKA-DRMKVWDAIEE--------QFNRSDVIEGRIISRIKGGMTV----DVGLKAFL 155 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L+ RD D IG + + M+ R + +++V++++ R+ + Sbjct: 156 PGSQIDLRPVRDMDRL--IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 213 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K GEI+ G VK + +DLG DG++ + +E + GD+V + Sbjct: 214 K--EGEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLK 271 Query: 189 VRREQ 193 +E Sbjct: 272 HDKET 276 >gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus] Length = 324 Score = 50.4 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + + + + + + L+ G++ +E LA +++ G TA +I A Sbjct: 6 EQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 Query: 414 REYLEGIDITLQKKIRE 430 R+ L+ T + +E Sbjct: 66 RDALDIRFKTALEVKKE 82 >gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal Structure Of A Crenarchaeal Rada Length = 324 Score = 50.4 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + + + + + + L+ G++ +E LA +++ G TA +I A Sbjct: 6 EQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 Query: 414 REYLEGIDITLQKKIRE 430 R+ L+ T + +E Sbjct: 66 RDALDIRFKTALEVKKE 82 >gi|57641834|ref|YP_184312.1| DNA repair and recombination protein RadA [Thermococcus kodakarensis KOD1] gi|73913728|sp|Q5JET4|RADA_PYRKO RecName: Full=DNA repair and recombination protein radA; Contains: RecName: Full=Pko radA intein gi|57160158|dbj|BAD86088.1| RadA/Rad51 recombinase [Thermococcus kodakarensis KOD1] Length = 836 Score = 50.4 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ V A L G+ +E +A E+ I G E A++I ARE Sbjct: 36 EKKISALEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEGAALKIIQAARE 95 Query: 416 Y 416 Sbjct: 96 A 96 >gi|302348977|ref|YP_003816615.1| transcription elongation factor NusA-like protein [Acidilobus saccharovorans 345-15] gi|302329389|gb|ADL19584.1| transcription elongation factor NusA-like protein [Acidilobus saccharovorans 345-15] Length = 150 Score = 50.4 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308 +G +G G V+ + L +++V +S D + V N V KV + + + Sbjct: 53 IGKAIGKDGRNVKTLSRILNK-NVEVVEYSADLESMVRNLFPGVTVLKVDVVDKNDGKVV 111 Query: 309 EVIVPKEQLSLAIGRRGQNVRLA 331 V V ++ AIGR G+NV+ A Sbjct: 112 YVKVKDDEKGKAIGRDGRNVKRA 134 >gi|73669826|ref|YP_305841.1| DNA repair and recombination protein RadA [Methanosarcina barkeri str. Fusaro] gi|121695787|sp|Q46A31|RADA_METBF RecName: Full=DNA repair and recombination protein radA gi|72396988|gb|AAZ71261.1| DNA repair protein [Methanosarcina barkeri str. Fusaro] Length = 325 Score = 50.4 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY----- 416 + V A L GF +E +A SE+A+ E TA +I AR+ Sbjct: 6 LEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGG 65 Query: 417 LEGIDITLQKK 427 E DI L+++ Sbjct: 66 FETGDIVLERR 76 >gi|269926456|ref|YP_003323079.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 431 Score = 50.1 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%) Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + Q+ +E ++R E + G+I+ G V + VD+G +DG+I E Sbjct: 240 IATQERKETSKERLIEEL--REGQIVKGRVTSLADFGAFVDIGGADGLIHLSEISWGRIN 297 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM-EVPEIYNGIVQ 225 E L+PGD V + ++ RE + + + RT P+ +V +I G V Sbjct: 298 HPSEVLKPGDEVDVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEVT 353 >gi|307267235|ref|ZP_07548738.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917730|gb|EFN48001.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 283 Score = 50.1 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Query: 119 IQKVREAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 ++V + ER++ K G+I+ G VK + V VD+G DG I E Sbjct: 169 QKEVLKLEREKVKKALLSNLKEGDIVEGKVKNIIDKGVFVDIGGFDGFIPLSEISWERIK 228 Query: 172 -SRENLRPGDRVKSYIYDVRREQRG 195 RE L GD+V YI +V +++ Sbjct: 229 NPREVLGIGDKVSVYILNVDEKKKN 253 >gi|241007827|ref|XP_002405184.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis] gi|215491711|gb|EEC01352.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis] Length = 352 Score = 50.1 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +TE +++ ++ + L GF VE +A ++ +I+G Sbjct: 20 MTEVAQEEVLDENYGPVRIQKLEGNGIGAADIKKLEEAGFHTVEAVAYAPKKQLLTIKGI 79 Query: 402 DEETAVEIQGRA 413 E A ++ A Sbjct: 80 SEAKADKLLAEA 91 >gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula boonei 6A8] gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei 6A8] Length = 325 Score = 50.1 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 22/52 (42%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L G+ VE +A +E++ I E TA +I ARE Sbjct: 10 DLPGVGPSTADKLREAGYLSVESIATASPAELSEITEISESTAKKIIKAARE 61 >gi|150399427|ref|YP_001323194.1| transcription elongation factor NusA-like protein [Methanococcus vannielii SB] gi|141390|sp|P14026|NUSA_METVS RecName: Full=NusA protein homolog gi|44783|emb|CAA34088.1| unnamed protein product [Methanococcus vannielii] gi|150012130|gb|ABR54582.1| NusA family KH domain protein [Methanococcus vannielii SB] Length = 173 Score = 50.1 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 +GA +G G V+ + +KID++ +S D F+ N P + V + + + Sbjct: 43 IGAAIGKGGENVKNATDKF-GKKIDLIEYSEDLKQFIKNIFAPIELEDVWVKKFGNDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 V V IG +G+N+ Sbjct: 102 YVRVHPRLRRAIIGDKGKNI 121 >gi|171186409|ref|YP_001795328.1| transcription elongation factor NusA-like protein [Thermoproteus neutrophilus V24Sta] gi|170935621|gb|ACB40882.1| NusA family KH domain protein [Thermoproteus neutrophilus V24Sta] Length = 144 Score = 50.1 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVI 311 VG G+ V+ + ++ + ++IV + N+L PA V V + + Sbjct: 50 VGRGGANVKML-KQIVGKDVEIVETGDTPEELIKNSLYPAKVIMVKVTKAPSGAKVAITT 108 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V E +AIG+ G+N+ A L DI Sbjct: 109 VAPEDKGIAIGKNGRNIARAKILAKRYFDI 138 >gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides burtonii DSM 6242] gi|121691598|sp|Q12UG7|RADA_METBU RecName: Full=DNA repair and recombination protein radA gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides burtonii DSM 6242] Length = 325 Score = 50.1 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 358 RTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 T+ ++ ++ V A L GF +E +A +E+A+ E TA +I AR Sbjct: 1 MTEVLLEDLDHVGPATAQKLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAAR 58 >gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus saccharovorans 345-15] gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus saccharovorans 345-15] Length = 326 Score = 50.1 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++E S +K + + V A LV G+A +E +A EIA G Sbjct: 1 MSEANASQAVKKPKDI-----TELPGVGPTTAEKLVESGYATIEAIAVATPQEIAQATGI 55 Query: 402 DEETAVEIQGRAREYLE 418 +TA +I AR+ LE Sbjct: 56 PLQTAQKIVDSARQALE 72 >gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str. 7] gi|20139589|sp|Q975Y1|RADA_SULTO RecName: Full=DNA repair and recombination protein radA gi|15621272|dbj|BAB65267.1| 324aa long hypothetical DNA repair protein radA [Sulfolobus tokodaii str. 7] Length = 324 Score = 50.1 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 10/109 (9%) Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + V + I + L+ G++ +E +A +++ G TA I ARE Sbjct: 9 KKVKSLSDLPGVGQSILNKLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRIIKEAREA 68 Query: 417 LE----GIDITLQKKIRELGVSEELCSIPGI------DSKIKVALGENG 455 L+ +++I ++ ++ G+ + GE G Sbjct: 69 LDIRFKTALEVKKERINTKKITTGSQALDGLLGGGIETRTMTELFGEFG 117 >gi|34395788|sp|Q8PZN5|RADA_METMA RecName: Full=DNA repair and recombination protein radA Length = 325 Score = 50.1 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + V A L GF +E +A SE+A+ E TA +I AR+ + Sbjct: 6 LEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 62 >gi|167044064|gb|ABZ08749.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_APKG4H17] Length = 154 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 13/91 (14%) Query: 252 GACVGMRGSRVQ---AVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDV 305 G +G GS ++ ++ I+++ + D F+ N L P V +V LD + Sbjct: 48 GLAIGKGGSNIKSLKNIIKR----NIELIEYFDDPIKFLKNILNPKFVNEVKLDTKPDGS 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQN---VRLASQ 333 + +IV + L +GR G N RL ++ Sbjct: 104 SQATIIVDHGKKGLVVGRAGCNAEKARLFAK 134 >gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus SNP6] gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus SNP6] Length = 328 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 NV IA L GF+ +E +A SE+++ E TA +I AR+ Sbjct: 15 LEDLPNVGPAIAEKLREAGFSTIEAIAVASPSELSAAAEIGESTAAKIISAARK 68 >gi|45358929|ref|NP_988486.1| transcription elongation factor NusA [Methanococcus maripaludis S2] gi|45047795|emb|CAF30922.1| KH domain:KH domain, type 1 [Methanococcus maripaludis S2] Length = 173 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 +GA +G G V+ + +KID++ +S D F+ N P V V + D + Sbjct: 43 IGAAIGKGGENVRNATEKF-GKKIDLIEYSEDVKQFIKNIFAPIEVEDVWTKKFGDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 + V IG +G+N+ Sbjct: 102 YIRVHPRFRRAIIGDKGKNI 121 Score = 37.0 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + A V D++ +I +V + + AIG+ G+NVR A++ G ID+I ED Sbjct: 19 MTGADVIDSTSDDE--KIVFVVKEGDIGAAIGKGGENVRNATEKFGKKIDLIEYSEDVKQ 76 Query: 351 RQKDF 355 K+ Sbjct: 77 FIKNI 81 >gi|18312089|ref|NP_558756.1| transcription elongation factor NusA-like protein [Pyrobaculum aerophilum str. IM2] gi|18159519|gb|AAL62938.1| transcription termination factor NusA, putative [Pyrobaculum aerophilum str. IM2] Length = 144 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVI 311 VG GS V+ + + + +++V + N+L PA V V + + Sbjct: 50 VGKGGSNVKMLRQ-IVGKDVEVVEAGDTPEELIKNSLYPAKVIMVKVTKAPSGAKVAITT 108 Query: 312 VPKEQLSLAIGRRGQNV 328 V E +AIG+ G+N+ Sbjct: 109 VAPEDKGVAIGKNGRNI 125 Score = 37.4 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VV+D + RI +V K Q ++A+G+ G NV++ Q+ G +++ Sbjct: 26 IDVVIDPEYSRIIYVVQKNQAAIAVGKGGSNVKMLRQIVGKDVEV 70 >gi|147900484|ref|NP_001081236.1| DNA repair protein RAD51 homolog A [Xenopus laevis] gi|2500105|sp|Q91918|RA51A_XENLA RecName: Full=DNA repair protein RAD51 homolog A; Short=xRAD51.1 gi|1054624|dbj|BAA07501.1| XRad51.1 [Xenopus laevis] gi|57033002|gb|AAH88930.1| LOC397726 protein [Xenopus laevis] Length = 336 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E ++ F + ++ ++ L GF VE +A E+ +I+G E Sbjct: 8 EAEATEEEHFGPQAISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAK 67 Query: 406 AVEIQGRA 413 A +I A Sbjct: 68 AEKILAEA 75 >gi|242399963|ref|YP_002995388.1| DNA repair and recombination protein radA [Thermococcus sibiricus MM 739] gi|242266357|gb|ACS91039.1| DNA repair and recombination protein radA [Thermococcus sibiricus MM 739] Length = 526 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%) Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 +D + E + + + V A L G+ +E +A E+ Sbjct: 22 ELDALDELSVEEPTKGSNKKEIKSIEDLPGVGPATAEKLREAGYDSLEAIAVASPLELKE 81 Query: 398 IEGFDEETAVEIQGRAREY 416 + G E A++I ARE Sbjct: 82 LAGVSEGAALKIIQAAREA 100 >gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1] Length = 324 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE----G 419 + V A L GF VE +A SE+A+ E TAV+I AR + Sbjct: 8 ELPGVGPATAEKLKDAGFNSVEAIAVASPSELAATAEIGESTAVKIIAAARTSADVGGFE 67 Query: 420 IDITLQKKIRELG 432 + ++ +E+G Sbjct: 68 TGDAILERRKEIG 80 >gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus acidocaldarius DSM 639] gi|76363310|sp|Q4JAT5|RADA_SULAC RecName: Full=DNA repair and recombination protein radA gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639] Length = 321 Score = 49.7 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + V + I + LV G++ +E +A +++ G + TA I ARE Sbjct: 6 KKVKSLSDLSGVGQNILNKLVEAGYSSLEAVAVATPQDLSVAAGIPQTTAQRIIKEAREA 65 Query: 417 LEGIDITLQKKIRE 430 L+ T + +E Sbjct: 66 LDIRFKTALEVKKE 79 >gi|20092352|ref|NP_618427.1| DNA repair and recombination protein RadA [Methanosarcina acetivorans C2A] gi|34395790|sp|Q8TK71|RADA_METAC RecName: Full=DNA repair and recombination protein radA gi|19917601|gb|AAM06907.1| DNA repair protein [Methanosarcina acetivorans C2A] Length = 325 Score = 49.3 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + V A L GF VE +A SE+A+ E TA +I AR+ + Sbjct: 6 LEELPGVGPATAEKLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIINSARQAAD 62 >gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas acidaminovorans] gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas acidaminovorans] Length = 503 Score = 49.3 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 15/130 (11%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + + R V S +Q ++++RE ER L K KVG+I+ G V R+ +DLG Sbjct: 172 IECSENCRRIVVSHRQ--LEEMREQERKETALA-KLKVGDIVKGKVLRMTTFGAFIDLGG 228 Query: 161 SDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 +G++ E ++ L+ G ++ I D+ +G ++ LSR + F + Sbjct: 229 IEGLMHVSEISWQHIVRPQDELKKGQEIEVKILDI----KGEKIALSRK--VLLEDPFEV 282 Query: 215 EVPEIYNGIV 224 + E++ G + Sbjct: 283 AMKELHEGDI 292 Score = 36.6 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 25/168 (14%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E + +IS + + G + + + ++A+ + + E + Sbjct: 230 EGLMHVSEISWQHIVRPQDELKKGQEIEVKILDIKGEKIALS------RKVLLEDPFEVA 283 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI-------SRENLRPGDRV 182 E G+II+ V R+ +L +G+I E R+ ++ GD V Sbjct: 284 MKEL--HEGDIINCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDWV 341 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQF-----MVKLFHMEVPEIYNGIVQ 225 + I + + ++ LS + + ++ +E P + GIV+ Sbjct: 342 QVQILRIDEDTH--KISLSLKALEADPWDKIDEIIQLETP--FEGIVE 385 >gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon] gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon] gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon] Length = 315 Score = 49.3 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + V IA L G+ +E +A +E+ + E T+ +I ARE E Sbjct: 5 ELPGVGPAIAEKLREAGYNSLEAIAVASPAELVAAAEIGEATSAKIINSAREAAE 59 >gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] Length = 336 Score = 49.3 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + V A L GF +E +A SE+A G E A +I AR L Sbjct: 29 LTELEGVGPATAKRLAEAGFTSLESIAMSTPSELAVYAGISEAVAQKIIQAARSKL 84 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 17/76 (22%) Query: 434 SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGT 493 +L + G+ L E G ++E +A + +L ++ G Sbjct: 26 DYDLTELEGVGPATAKRLAEAGFTSLESIAMSTPSELAVYA-----------------GI 68 Query: 494 PKDQVESMIIHARYKM 509 + + +I AR K+ Sbjct: 69 SEAVAQKIIQAARSKL 84 >gi|124486202|ref|YP_001030818.1| hypothetical protein Mlab_1385 [Methanocorpusculum labreanum Z] gi|124363743|gb|ABN07551.1| NusA family KH domain protein [Methanocorpusculum labreanum Z] Length = 151 Score = 49.3 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G G ++ + L ++I++V + D F+ N +PA V V + + Sbjct: 49 GIAIGKGGDNIKKMSRVL-GKRIEMVEFDEDREVFIANMFKPAEVASVSYGGRDEPVMIT 107 Query: 312 VPKE-QLSLAIGRRG 325 VP+ LAIG+ G Sbjct: 108 VPERGDFGLAIGKGG 122 >gi|260437065|ref|ZP_05790881.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio crossotus DSM 2876] gi|292810374|gb|EFF69579.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio crossotus DSM 2876] Length = 367 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAE 126 V++E + + + ++D S G + + + R + KQ+++ K + Sbjct: 129 VIDETKVFIPASLVSDTYEKDLSKYAGQEIEFVITEFNPRKRRIIGDRKQLLVAK-KAKM 187 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 R+ + VG++++GTVK V V +D+G DG++ E ++ +PGD Sbjct: 188 REEVMSKIA--VGQVVTGTVKNVTDFGVFIDIGGVDGLLHVSEISWGRIENPKKKFKPGD 245 Query: 181 RVKSYIYDVRREQ 193 VK+YI D+ ++ Sbjct: 246 EVKAYIKDINNDK 258 >gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus gammatolerans EJ3] gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus gammatolerans EJ3] Length = 355 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V A L G+ +E +A E+ I G E A++I ARE Sbjct: 43 LEDLPGVGPATAEKLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREA 97 >gi|254173225|ref|ZP_04879898.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4] gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4] Length = 352 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V A L G+ +E +A E+ I G E A++I ARE Sbjct: 40 LEDLPGVGPATAEKLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREA 94 >gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] Length = 681 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 +I++E E S + + V E IA +L + + +EEL+ I E++ IE Sbjct: 490 NILSEIEKSKQNPIEKLLVG---LGIPGVGEKIAKVLAKK-YKSMEELSKADIKELSEIE 545 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTM 459 G E+ A I + + +K+R+ GV L S S I L T+ Sbjct: 546 GIGEDIAKNIVEY---FNSPKTKEILEKLRKAGV--NLESAETTTSNILDGLTFCVTGTL 600 Query: 460 EDLAGCSVDDLLG 472 E+ + + + Sbjct: 601 ENFSREEIKRFIE 613 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M + I +V G D+ +L + I ++A I G + I L I+ Sbjct: 444 MDIQGLGPKIISKIVDAGLVKDIADLYYLNIFDLAQISGLGPKMISNI-------LSEIE 496 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKG 478 + Q I +L V IPG+ KI L + K+ME+L+ + +L G E+ Sbjct: 497 KSKQNPIEKLLVG---LGIPGVGEKIAKVLAKK-YKSMEELSKADIKELSEIEGIGEDIA 552 Query: 479 GNIEKF 484 NI ++ Sbjct: 553 KNIVEY 558 >gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus barophilus MP] gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus barophilus MP] Length = 355 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++ + + K + + V A L G+ +E +A E+ I G Sbjct: 23 LSIDAEVAKTSKKKKKEIKTLEDLPGVGPATAEKLREAGYDSLEAIAVASPIELKEIAGI 82 Query: 402 DEETAVEIQGRAREY 416 E A++I ARE Sbjct: 83 SEGAALKIIQAAREA 97 >gi|291460381|ref|ZP_06599771.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262] gi|291416948|gb|EFE90667.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262] Length = 374 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 60/132 (45%), Gaps = 12/132 (9%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + + +RD + G + + + + V ++ I+ +++ + D+ + E + G+ Sbjct: 135 VSDSFERDLNKYQGQDIQFVITEFNPQKRRVIGDRKQIMLALKKEQHDKLFAEL--REGD 192 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 + +G VK + +DLG +DG++ E ++ +PG VK + ++ Sbjct: 193 VRTGVVKNLTDFGAFIDLGGADGLLHISEMSWGRIENPKKLFKPGQEVKVLVKEI----N 248 Query: 195 GPQVLLSRTHPQ 206 G ++ L+R P Sbjct: 249 GERIALTRKFPD 260 >gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus DSM 5456] gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM 5456] Length = 323 Score = 49.3 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + + V A+ L+ G+A +E +A E+++ G A I AR Sbjct: 2 AKQEIKSITDLPGVGPATANKLIEAGYATIEAIAVATPQELSAAAGIPLTAAQRIIKAAR 61 Query: 415 EYLEGIDITLQKKIRE 430 E L+ T + +E Sbjct: 62 EALDIRFKTALEVKKE 77 >gi|134045257|ref|YP_001096743.1| transcription elongation factor NusA-like protein [Methanococcus maripaludis C5] gi|132662882|gb|ABO34528.1| NusA family KH domain protein [Methanococcus maripaludis C5] Length = 173 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRI 308 +GA +G G V+ + +KID++ +S D+ F+ N P + V D + Sbjct: 43 IGAAIGKGGENVRNATEKF-GKKIDLIEYSEDAKQFIKNIFAPIELEDVWTKKFSDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 V V IG +G+N+ Sbjct: 102 YVRVHPRLRRAVIGDKGKNI 121 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + A V D++ +I +V + + AIG+ G+NVR A++ G ID+I ED+ Sbjct: 19 MTGANVIDSTSDDE--KIVFVVKEGDIGAAIGKGGENVRNATEKFGKKIDLIEYSEDAKQ 76 Query: 351 RQKDFNERTQF 361 K+ + Sbjct: 77 FIKNIFAPIEL 87 >gi|167044139|gb|ABZ08822.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_APKG5C13] Length = 154 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGRI 308 G +G GS ++++ L+ +++V + D F+ N L P V +V LD + ++ Sbjct: 48 GLAIGKGGSNIKSLQNILKR-NVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQV 106 Query: 309 EVIVPKEQLSLAIGRRGQN---VRLASQ 333 +IV + L +GR G+N RL ++ Sbjct: 107 TIIVDHGKKGLVVGRDGRNAEKARLFAK 134 >gi|88603707|ref|YP_503885.1| ski2-like helicase [Methanospirillum hungatei JF-1] gi|88189169|gb|ABD42166.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei JF-1] Length = 799 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASI--EGFDEETAVEIQGRAREYLEGIDITL 424 N+ + A L G+ D E +A +S IA I EG + EI G R + D Sbjct: 650 NIGRVRARTLYNAGYPDPEAVARAGLSTIARIIGEGIARQVIDEITGVKRSGIHSSDDDY 709 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 Q+K EL L IPGI K+ L GI T+ DL + D++L Sbjct: 710 QQKTPEL-----LTDIPGIGKKMAEKLQNAGIITVSDL--LTADEVL 749 >gi|163782100|ref|ZP_02177099.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1] gi|159882632|gb|EDP76137.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1] Length = 535 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K G+I++G V +++ V VD+G +GVI R+E E+++ GD +++ I + Sbjct: 19 KKGKIVTGRVIKIDDRYVYVDIGYKVEGVIPREEV--GEDIKEGDEIQAVIVKISPRLDY 76 Query: 196 PQV 198 P++ Sbjct: 77 PRL 79 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G + GTV++ G IVD+ + E + + L G V+ + ++ ++ P+ Sbjct: 99 EGRDVVGTVEKKTKGGFIVDIEGVKAFLPASE--AGKKLSVGKPVRVKVIEISLQKDRPR 156 Query: 198 VLLS 201 V++S Sbjct: 157 VIVS 160 >gi|150402535|ref|YP_001329829.1| transcription elongation factor NusA-like protein [Methanococcus maripaludis C7] gi|150033565|gb|ABR65678.1| NusA family KH domain protein [Methanococcus maripaludis C7] Length = 173 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRI 308 +GA +G G V++ + +KID++ +S D F+ N P + V D + Sbjct: 43 IGAAIGKGGENVKSATEKF-GKKIDLIEYSEDVKQFIKNIFAPVELEDVWTKKFSDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 V V IG +G+N+ Sbjct: 102 YVRVHPRLRRAVIGDKGKNI 121 Score = 37.4 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + A V D++ +I +V + + AIG+ G+NV+ A++ G ID+I ED Sbjct: 19 MTGANVIDSTSDDE--KIVFVVKEGDIGAAIGKGGENVKSATEKFGKKIDLIEYSEDVKQ 76 Query: 351 RQKDFNERTQF 361 K+ + Sbjct: 77 FIKNIFAPVEL 87 >gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus NA1] gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1] Length = 353 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + V A L G+ +E +A E+ I G E A++I ARE Sbjct: 38 IKTLEDLPGVGPATAEKLREAGYDSIEAIAVASPMELKEIAGISEGAALKIIQAAREA 95 >gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037] gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037] Length = 484 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 16/103 (15%) Query: 111 VQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGV 164 + KQV I + AE ++ F D G++I GTV +++ V++D+G ++GV Sbjct: 7 APAIKQVAINDIGSAEDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGV 64 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 I E E + GD V++ + ++E + +++LS Sbjct: 65 IPSRELSIKHDVDPNEVVNVGDHVEALVL--QKEDKEGRLILS 105 >gi|300727965|ref|ZP_07061343.1| hemin-binding protein [Prevotella bryantii B14] gi|299774807|gb|EFI71421.1| hemin-binding protein [Prevotella bryantii B14] Length = 593 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 13/112 (11%) Query: 122 VREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 V +A+ ++ Y E +K E++ GTV ++ VIV++G SDG+I E L+ Sbjct: 26 VSKADLEKAYDETLNKIQEHEVVEGTVIALDKKEVIVNIGYKSDGIIPASEFRYNPELKI 85 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMV------KLFHMEVPEIYNGIV 224 GD+V+ Y+ D + +++G Q++LS + + E EI G + Sbjct: 86 GDKVEVYVED-QEDKKG-QLVLSHKKARLAKSWDKINEALENE--EIIQGYI 133 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ V + + +I+ EA+R Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+I+ GTVK + V VDLG DG+I + E + ++K Sbjct: 207 IGKLE--KGQILEGTVKNITSYGVFVDLGGVDGLIHITDLSWGRVSDPHEVVALDQKIKV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|206901601|ref|YP_002251093.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12] gi|206740704|gb|ACI19762.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12] Length = 552 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 22/148 (14%) Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQK 121 +V +V+N +IS +D S+ +G V + D + S KQV Sbjct: 293 IVVKVDNLIGYVPMSEISWGRPQDVKNSLKVGDKVKAKVLSVDDLNQKIFLSIKQVEPN- 351 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRD----ETISR--E 174 + +K +GEI+SG V + + +++ +G+I R E IS + Sbjct: 352 ----PWEVIDQNYK--IGEIVSGKVTNITDFGIFIEIKPGLEGLIPRKLISWERISNISD 405 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSR 202 +PGD +++ I ++ +E + ++ LSR Sbjct: 406 IFKPGDFIEAKIIEIDKENK--KLTLSR 431 >gi|20807800|ref|NP_622971.1| ribosomal protein S1 [Thermoanaerobacter tengcongensis MB4] gi|20516357|gb|AAM24575.1| Ribosomal protein S1 [Thermoanaerobacter tengcongensis MB4] Length = 367 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK--V 138 L R + +G ++ + G+ + S K+VI E ++ E ++ Sbjct: 136 LSTKRVENLEEYLGKILELLIIEYVPGKKIIASRKEVIK-----LEEEKMKAELLERLEE 190 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRRE 192 G++I G V R+ V+LG DG I E E ++PG +V +Y+ V ++ Sbjct: 191 GDVIEGKVSRIIPKGAFVNLGGMDGFIPISELGHGRIKSPEEVIKPGHKVSAYVLKVDKK 250 Query: 193 QRGPQVLLS 201 + ++ LS Sbjct: 251 EG--KITLS 257 >gi|237757008|ref|ZP_04585463.1| putative N utilization substance protein A [Sulfurihydrogenibium yellowstonense SS-5] gi|237690826|gb|EEP59979.1| putative N utilization substance protein A [Sulfurihydrogenibium yellowstonense SS-5] Length = 75 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLF 63 ++L + + ++ E++I DV+ + D I A + + +++ + E ++ + Sbjct: 2 SVKLKNVIETISRERNIPEDVIEKALKDGILTAVKKEFKLREKGAVKIIFDKEKDELKVL 61 Query: 64 RLLEVVEEVENYTC 77 +V VE+ T Sbjct: 62 IKKKVTPFVEDETK 75 >gi|229825037|ref|ZP_04451106.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC 49176] gi|229790784|gb|EEP26898.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC 49176] Length = 647 Score = 48.9 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 14/141 (9%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAE 126 VV+E + + +++ G + + R + KQ++ K E Sbjct: 403 VVDEARVFIPASLVSDTYEKNLDKYAGEEIEFVISEFNPKKRRVIGDRKQILTAKKNEL- 461 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 + + + VG+++ GTVK V +DLG +DG++ E ++ + GD Sbjct: 462 KKALFEKLA--VGQVVDGTVKNVTDFGAFIDLGGADGLLHISEMSWGHIENPKKVFKVGD 519 Query: 181 RVKSYIYDVRREQRGPQVLLS 201 VK+++ D++ G ++ LS Sbjct: 520 MVKTFVKDIQ----GEKIALS 536 >gi|154483595|ref|ZP_02026043.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC 27560] gi|149735505|gb|EDM51391.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC 27560] Length = 365 Score = 48.5 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 14/128 (10%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 + A +RD + + + + R + KQ+I+ + +EA + + + + VG Sbjct: 137 VSDAFERDLDKYLNQEIEFVVTEFNPKKRRIIGDRKQLIVAE-KEAAKKALFEKIE--VG 193 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + ++G VK V +D+G +DG++ E R+ +PGD V ++I ++ Sbjct: 194 QTVTGVVKSVVDFGAFIDIGGADGLLHISEMSWGRVGNPRKLFKPGDEVTAFIKEI---- 249 Query: 194 RGPQVLLS 201 G ++ LS Sbjct: 250 NGDKIALS 257 >gi|284162092|ref|YP_003400715.1| NusA family KH domain protein [Archaeoglobus profundus DSM 5631] gi|284012089|gb|ADB58042.1| NusA family KH domain protein [Archaeoglobus profundus DSM 5631] Length = 139 Score = 48.5 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 279 WSPDSATFVINALRPAIV-TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 S + F+ N +P V K++ V V + L IG+ G+N+ A +L Sbjct: 70 HSDNPEEFIANIFKPIKVNVKIIEKGGKKIAIVSVNPQYKGLVIGKGGKNINKAKELAKR 129 Query: 338 TIDI 341 DI Sbjct: 130 HHDI 133 >gi|13878668|sp|O73948|RADA_METVO RecName: Full=DNA repair and recombination protein radA gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS] Length = 322 Score = 48.5 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + V A LV G+ D ++A + E+ IEG E+ A ++ AR+ Sbjct: 1 MSDNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 17/74 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +S+ L +PG+ L E G D + + G + +G Sbjct: 1 MSDNLTDLPGVGPSTAEKLVEAGYI-----------DFMKIATATVGELTDIEGI----- 44 Query: 493 TPKDQVESMIIHAR 506 + MI+ AR Sbjct: 45 -SEKAAAKMIMGAR 57 >gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + N + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDNREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|159905690|ref|YP_001549352.1| transcription elongation factor NusA-like protein [Methanococcus maripaludis C6] gi|159887183|gb|ABX02120.1| NusA family KH domain protein [Methanococcus maripaludis C6] Length = 173 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDEDVGRI 308 +GA +G G V++ + +KID++ +S D F+ N P + V D + Sbjct: 43 IGAAIGKGGENVKSATEKF-GKKIDLIEYSEDVKQFIKNIFAPIELEDVWTKKFSDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 V V IG +G+N+ Sbjct: 102 YVRVHPRLRRAVIGDKGKNI 121 Score = 37.0 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + A V D++ +I +V + + AIG+ G+NV+ A++ G ID+I ED Sbjct: 19 MTGANVIDSTSDDE--KIVFVVKEGDIGAAIGKGGENVKSATEKFGKKIDLIEYSEDVKQ 76 Query: 351 RQKDFNERTQF 361 K+ + Sbjct: 77 FIKNIFAPIEL 87 >gi|261880726|ref|ZP_06007153.1| 30S ribosomal protein S1 [Prevotella bergensis DSM 17361] gi|270332500|gb|EFA43286.1| 30S ribosomal protein S1 [Prevotella bergensis DSM 17361] Length = 590 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN 175 Q + Y E +K E++ GTV V+ V+V++G SDG+I E Sbjct: 23 SQSASREALENAYDETLNKIQEHEVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRYNPE 82 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209 L+ GD+V+ Y+ D + +++G Q++LS + Sbjct: 83 LKVGDKVEVYVED-QEDKKG-QLVLSHKKARLTK 114 Score = 36.6 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +F R V S K +I ++ +R+ Sbjct: 149 EAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEF-RNVVVSHKALIEAELEAQKREII 207 Query: 131 YLEFKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVK 183 G+++ GTVK + V VDLG DG++ + E + ++K Sbjct: 208 ----SHLEKGQVLEGTVKNITSYGVFVDLGGVDGLVHITDLSWGRVSDPHEVVELDQKIK 263 Query: 184 SYIYDVRREQR 194 I D E++ Sbjct: 264 VVILDFDEERK 274 >gi|148223319|ref|NP_001080559.1| DNA repair protein RAD51 homolog B [Xenopus laevis] gi|2500106|sp|Q91917|RA51B_XENLA RecName: Full=DNA repair protein RAD51 homolog B; Short=xRAD51.2 gi|1054622|dbj|BAA07500.1| XRad51.2 [Xenopus laevis] gi|28302165|gb|AAH46650.1| Rad51 protein [Xenopus laevis] gi|80477159|gb|AAI08487.1| Rad51 protein [Xenopus laevis] Length = 336 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + +++F + ++ ++ L GF VE +A E+ +I+G E Sbjct: 8 QAEATEEENFGPQAITRLEQCGINANDVKKLEDAGFHTVEAVAYAPKKELLNIKGISEAK 67 Query: 406 AVEIQGRA 413 A +I A Sbjct: 68 AEKILAEA 75 >gi|225174807|ref|ZP_03728804.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter alkaliphilus AHT 1] gi|225169447|gb|EEG78244.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter alkaliphilus AHT 1] Length = 678 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 11/99 (11%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE------TISRENL 176 E D++ EF G++++GTV +V V+VD+G S+GV+ R E + + + Sbjct: 293 EVSLDQEIKEFSA--GDVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVILEGDQMLADVM 350 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 G V+ + V ++ +++LSR + K +E Sbjct: 351 ENGQEVEVAVKKVDDQEG--RIILSRKAIERKQKWAELE 387 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 18/146 (12%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ L+ + ++ G V + +D + +++ I +K + AE ++ + E Sbjct: 334 PRQEVILEGDQMLADVMENGQEVEVAVKKVDDQEGRIILSRKAIERKQKWAELEKAFEE- 392 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRD----ETISRENLRPGDRVKSYIYDV 189 G I+SG VK ++V+LG D + I N G + I ++ Sbjct: 393 ----GTILSGKVKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFNEFQGQEISFKIIEM 448 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHME 215 R E+ +++LSR ++ E Sbjct: 449 RPEKE--KLILSR------KQVLEEE 466 Score = 37.4 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 13/137 (9%) Query: 67 EVVEEVENYTCQI--SLKVARDR-DPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKV 122 VVE Y + SL R D + G +S + + S KQV+ ++ Sbjct: 408 LVVELGGGYDAFMPGSLVDVRYIPDFNEFQGQEISFKIIEMRPEKEKLILSRKQVLEEEA 467 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENL 176 ++D+ E + G+II GTVKR+ VD+G DG++ E E L Sbjct: 468 -AVQKDKVLAELEP--GQIIKGTVKRLTNFGAFVDVGGIDGLVHISEISWHRIDNPGEVL 524 Query: 177 RPGDRVKSYIYDVRREQ 193 GD ++ + +V E+ Sbjct: 525 SVGDEIEVKVIEVIPER 541 >gi|39996302|ref|NP_952253.1| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA] gi|39983182|gb|AAR34576.1| ribosomal protein S1 [Geobacter sulfurreducens PCA] gi|298505312|gb|ADI84035.1| RNA-binding S1 domain protein [Geobacter sulfurreducens KN400] Length = 402 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 21/177 (11%) Query: 33 DSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSID 92 +++ A R+ ++ EI G + V QISL+ A +P+ Sbjct: 107 SALEDAYRAGIPVEGNVEKEI---KGGFEIKVGGTVRA--FCPYSQISLRRA--ANPAEF 159 Query: 93 IGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD--KVGEIISGTVKRV 149 +G + + + GR V S + + E E ++ KD K G ++GTV R+ Sbjct: 160 VGRQLLFKVVEFAERGRNIVLS-----HRAILEEEERQKREALKDTLKEGTTLTGTVTRL 214 Query: 150 EYGNVIVDLGNSDGVIRRDE----TIS--RENLRPGDRVKSYIYDVRREQRGPQVLL 200 VD+G +G+I E + + L G++V + + + E + L Sbjct: 215 MPFGAFVDIGGVEGLIPISEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSL 271 >gi|329116849|ref|ZP_08245566.1| hypothetical protein SPB_1053 [Streptococcus parauberis NCFD 2020] gi|326907254|gb|EGE54168.1| hypothetical protein SPB_1053 [Streptococcus parauberis NCFD 2020] Length = 182 Score = 48.5 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 14/135 (10%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D T E ++F + + + ++ D++ L +G EE+ K E+ I+ Sbjct: 43 DAETVEIVEKPSFEEFAKNPEL--EGLSADKV--KSLYDQGITSPEEIKNFKEEELLDIK 98 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTM 459 G T ++ + L EL + I S + L GI T Sbjct: 99 GVGPATVEKL----------SETVGVDGKGSLNEFSELKEVADIRSDLVEMLYHEGITTA 148 Query: 460 EDLAGCSVDDLLGWS 474 D S DDL+ + Sbjct: 149 ADFKKWSKDDLIAIN 163 >gi|62858453|ref|NP_001016393.1| RAD51 homolog (RecA homolog) [Xenopus (Silurana) tropicalis] gi|134254224|gb|AAI35426.1| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis] Length = 336 Score = 48.1 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E +++F + ++ ++ L GF VE +A E+ +I+G E Sbjct: 8 EAEATEEENFGPQAISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAK 67 Query: 406 AVEIQGRA 413 A +I A Sbjct: 68 AEKILAEA 75 >gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571] gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571] Length = 932 Score = 48.1 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 8/130 (6%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++ EE + + ++ V + GF E+ + + +++ G Sbjct: 785 LSAEEAESLSHEARLVYNKALLKEYGVPAVSLKKYFDAGFVTPEDFCYIHPAYLSAKTGL 844 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSE---ELCSIPGIDSKIKVALGENGIKT 458 + +T + A E + L +K+ + + EL SI G+ + L GI + Sbjct: 845 NIDTVYK---HAAIVCEATGVRLPEKVSKKELESGRIELLSIEGLGEAMLEKLYMAGIVS 901 Query: 459 MEDLAGCSVD 468 + L CS D Sbjct: 902 RKKL--CSAD 909 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 24/145 (16%) Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++ + + L + V E+A +++ + G +E + ++ A E LE + Sbjct: 677 IPSISKDLISNLHSHNIYTVYEIANENPEKLSKVTGISKEDSEKLIREADEVLELLRKRS 736 Query: 425 QKK--IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + K +R++ + S +K+ + GI ME LA Sbjct: 737 ELKKFVRKIIPPKRGRSH----AKVLNMFFDAGIVDMESLAR------------------ 774 Query: 483 KFDGFLSSLGTPKDQVESMIIHARY 507 L + ++ ES+ AR Sbjct: 775 ADKKTLEKMKLSAEEAESLSHEARL 799 >gi|325971203|ref|YP_004247394.1| RNA binding S1 domain protein [Spirochaeta sp. Buddy] gi|324026441|gb|ADY13200.1| RNA binding S1 domain protein [Spirochaeta sp. Buddy] Length = 571 Score = 48.1 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 14/93 (15%) Query: 126 ERDRQYLEFKDKV-----GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE--TISRENLR 177 +D E+ + G++++GTV +V V VD+G S+G I RDE +I Sbjct: 14 MQDMLQEEYLKSLDGIEDGQLVAGTVVQVNNEYVFVDVGYKSEGRISRDEFASIP----E 69 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 G+ VK I + +E +G Q+++S+ F + Sbjct: 70 VGEEVKVVI--INKEGKGGQIVVSKKRADFKER 100 >gi|257051865|ref|YP_003129698.1| transcription elongation factor NusA-like protein [Halorhabdus utahensis DSM 12940] gi|256690628|gb|ACV10965.1| NusA family KH domain protein [Halorhabdus utahensis DSM 12940] Length = 142 Score = 48.1 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRI 308 VG +G G V + L + +V +P FV NAL PA V V ++E Sbjct: 45 VGKAIGRDGETVARIEDRL-GRDVTLVEDAPTPEGFVANALAPAAVYDVTIEERDGERVA 103 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + AIG G+ + LA +L G +I Sbjct: 104 FADVDEADTGAAIGTEGRTIELARRLAGRHFEI 136 >gi|47222497|emb|CAG13017.1| unnamed protein product [Tetraodon nigroviridis] Length = 351 Score = 48.1 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + +++F + ++ + L GF +E +A E+ +I+G E Sbjct: 10 QAEVEEEENFGPQPLCRLEQCGISASDIKKLEDAGFHTIEAVAYAPKKELLNIKGISEAK 69 Query: 406 AVEIQGRA 413 A +I A Sbjct: 70 ADKILTEA 77 >gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-Pnp And Potassium gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-Pnp gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp Length = 322 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A LV G+ D ++A + E+ IEG E+ A ++ AR+ Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 Score = 37.4 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 17/72 (23%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L +PG+ L E G D + + G + +G Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYI-----------DFMKIATATVGELTDIEGI------S 45 Query: 495 KDQVESMIIHAR 506 + MI+ AR Sbjct: 46 EKAAAKMIMGAR 57 >gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDQREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-Pnp gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium Co-F gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low Concentration Of K+ gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High Concentration Of K+ gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0 gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate Length = 322 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A LV G+ D ++A + E+ IEG E+ A ++ AR+ Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 Score = 37.4 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 17/72 (23%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L +PG+ L E G D + + G + +G Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYI-----------DFMKIATATVGELTDIEGI------S 45 Query: 495 KDQVESMIIHAR 506 + MI+ AR Sbjct: 46 EKAAAKMIMGAR 57 >gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans Kin4-M] gi|73913726|sp|Q74MX9|RADA_NANEQ RecName: Full=DNA repair and recombination protein radA gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M] Length = 325 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 V A L++ G+ + ++A + E+ E TA +I A E L ++ Sbjct: 17 PGVGPKTAEKLISAGYDSLIKIASASVEELMEAADIGEATARKIIEAAMERLGLLEFKTA 76 Query: 426 KKIRE 430 +++ E Sbjct: 77 EEVLE 81 >gi|300708611|ref|XP_002996481.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01] gi|239605787|gb|EEQ82810.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01] Length = 332 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 348 SINRQKDFNERTQFFMQ--AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + ++ T F + + + LV G+ VE LA ++ +I+GF + Sbjct: 3 ELIEETEYKSETTSFEELKKAGISLADINKLVEAGYNTVEALAYAPKKQLLTIKGFSDIK 62 Query: 406 AVEIQGRAREYLE---GIDITLQKKIREL 431 ++ A +++ +K ++L Sbjct: 63 VDKLIKEAAKFVPMGFTTASAYHEKRKDL 91 >gi|48477813|ref|YP_023519.1| DNA repair and recombination protein RadA [Picrophilus torridus DSM 9790] gi|73913727|sp|Q6L126|RADA_PICTO RecName: Full=DNA repair and recombination protein radA gi|48430461|gb|AAT43326.1| DNA repair and recombination protein radA [Picrophilus torridus DSM 9790] Length = 323 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%) Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + D +R V + A L G+ D+ +A ++A I G E A++I Sbjct: 1 MEKNDKEKRELTIEDLPGVGDATAEKLRESGYDDIMTIAVASPKDLAEISGIAEGAAIKI 60 Query: 410 QGRAREYLEGIDITLQKKI 428 AR+Y + + ++I Sbjct: 61 INAARKYADVGNFETGEEI 79 >gi|292654529|ref|YP_003534426.1| NusA family KH domain-containing protein, archaeal [Haloferax volcanii DS2] gi|291372738|gb|ADE04965.1| NusA family KH domain protein, archaeal [Haloferax volcanii DS2] Length = 139 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G G VQ+V +L +++V + FV +AL PA V V L V V Sbjct: 47 IGPGGRTVQSVERQL-GRTVELVEDADTPEAFVASALAPAAVRHVTLSRQNDTVAYVEVA 105 Query: 314 KEQLSLAIGRRGQNVRLASQLT--GWTID 340 + +AIG G+ + A +L + ID Sbjct: 106 EADRGVAIGASGKTIDTARELARRHYDID 134 >gi|315427207|dbj|BAJ48820.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum] gi|315427272|dbj|BAJ48884.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum] Length = 320 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 ++R + V +A L G++ VE +A +SE+ + G DEE A I AR Sbjct: 1 MSQRYNDIEELPGVSAKLAEKLRELGYSTVESIATATVSELVAA-GVDEEHASRIISAAR 59 Query: 415 EYLEGIDITLQK 426 E +E +T ++ Sbjct: 60 EGIEIAWVTAKE 71 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 20/86 (23%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495 ++ +PG+ +K+ L E G T+E +A +V +L+ G + Sbjct: 7 DIEELPGVSAKLAEKLRELGYSTVESIATATVSELVA------------------AGVDE 48 Query: 496 DQVESMIIHAR--YKMGWIEKEKVAD 519 + +I AR ++ W+ +++A+ Sbjct: 49 EHASRIISAAREGIEIAWVTAKELAE 74 >gi|139956|sp|P15738|NUSA_HALMO RecName: Full=NusA protein homolog gi|43623|emb|CAA40433.1| ORF 139 [Halococcus morrhuae] Length = 139 Score = 48.1 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI-VP 313 +G G+ V+ V L D+++ +V + + FV NAL PA+V V + E+ + V Sbjct: 47 IGPDGTTVEQVEERL-DKRVSLVENADTAELFVANALAPAVVHNVTISENASTVAYAEVD 105 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +AIGR G+ + A +L DI Sbjct: 106 RADTGVAIGRDGETIETARRLAERQFDI 133 >gi|326391105|ref|ZP_08212652.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992890|gb|EGD51335.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 367 Score = 47.8 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%) Query: 119 IQKVREAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 ++V + ER++ K G+I+ G VK + VD+G DG I E Sbjct: 169 QKEVLKLEREKVKKALLSNLKEGDIVEGKVKNIIDKGAFVDIGGFDGFIPLSEISWERIK 228 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 RE L GD+V YI +V + ++ LS Sbjct: 229 NPREVLGIGDKVSVYILNVDE--KKEKITLS 257 >gi|224050703|ref|XP_002196004.1| PREDICTED: RAD51 homolog (RecA homolog, E. coli) [Taeniopygia guttata] Length = 339 Score = 47.8 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 DS ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DSSAEEESFGPQLISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILAEA 78 >gi|167043882|gb|ABZ08571.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_APKG3E18] Length = 154 Score = 47.8 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDI--VVWSPDSATFVINALRPAIVTKVVLD---EDVG 306 G +G GS ++++ L K D+ V + D F+ N L P V +V LD + Sbjct: 48 GLAIGKGGSTIKSLQNIL---KRDVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSS 104 Query: 307 RIEVIVPKEQLSLAIGRRGQN---VRLASQ 333 + +IV + L +GR G+N RL ++ Sbjct: 105 QATIIVDHGKKGLVVGRDGRNAEKARLFAK 134 >gi|118575641|ref|YP_875384.1| transcription elongation factor [Cenarchaeum symbiosum A] gi|118194162|gb|ABK77080.1| transcription elongation factor [Cenarchaeum symbiosum A] Length = 154 Score = 47.8 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%) Query: 252 GACVGMRGSRV---QAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDV 305 G +G GS + Q ++ + +++V + D A F+ + L +V++V L+ + Sbjct: 48 GLAIGRGGSNIKSLQNIIKK----NVELVEYHEDPAEFLKHMLDSKLVSEVKLNKRSDGT 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + VIV ++ + IGR G+NV A L +I + Sbjct: 104 TQAIVIVDPQKKGIVIGRDGRNVEKARMLAKRYFEISS 141 >gi|295109915|emb|CBL23868.1| Ribosomal protein S1 [Ruminococcus obeum A2-162] Length = 358 Score = 47.8 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-------------PPMDFGRVAVQSAK 115 V +V + ++++ AR P+ + L R + + K Sbjct: 114 VTQVLDGGLCVNVEEARVFIPASLVSDTYEKDLSKYADKEIEFVITEFNPRRRRIIGNRK 173 Query: 116 QVIIQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 Q+++ AE+ + E ++ VG+ ++GTVK V +DLG +DG++ E Sbjct: 174 QLLL-----AEKAEKQKELMERIHVGDTVTGTVKNVTDFGAFIDLGGADGLLHISEMSWG 228 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ GD VK I ++ G ++ LS P+ Sbjct: 229 RVENPKKVFNVGDEVKVLIKEI----NGDKIALSMKFPE 263 >gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6] Length = 315 Score = 47.8 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 + V IA L G +E +A +E+ + E TA +I AR + Sbjct: 3 LEELPGVGPAIAEKLREAGLNSLEAIAVASPAELVATAEIGESTAAKIINAARAAADIGG 62 Query: 422 ITLQKKIRE 430 +KI E Sbjct: 63 FVTGEKILE 71 >gi|320115997|ref|YP_004186156.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319929088|gb|ADV79773.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 367 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%) Query: 119 IQKVREAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 ++V + ER++ K G+I+ G VK + VD+G DG I E Sbjct: 169 QKEVLKLEREKVKKALLSNLKEGDIVEGKVKNIIDKGAFVDIGGFDGFIPLSEISWERIK 228 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 RE L GD+V YI +V + ++ LS Sbjct: 229 NPREVLGIGDKVSVYILNVDE--KKEKITLS 257 >gi|294494932|ref|YP_003541425.1| DNA repair and recombination protein RadA [Methanohalophilus mahii DSM 5219] gi|292665931|gb|ADE35780.1| DNA repair and recombination protein RadA [Methanohalophilus mahii DSM 5219] Length = 325 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 358 RTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ ++ ++ V A L G+ VE +A SE+ + E TA +I AR Sbjct: 1 MSEILLEELDHVGPATAQKLNDAGYNSVEAVAVASPSELVATAEIGESTAAKIISAARSA 60 Query: 417 LE 418 + Sbjct: 61 AD 62 >gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC 43243] gi|217991139|gb|EEC57145.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC 43243] Length = 365 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 14/133 (10%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 + ++D + G VS + + R + KQ+I+ K E K G Sbjct: 138 ISDTYEKDLTKFEGQEVSFVITEYNPKKRRIIGDCKQLILAKKAEQAEKLLA---SIKEG 194 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + I GTVK V +DLG DG++ E ++ + GD VK+++ ++ Sbjct: 195 DTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVFKVGDSVKAFVKEI---- 250 Query: 194 RGPQVLLSRTHPQ 206 G ++ LS +P Sbjct: 251 NGSKIALSLKYPD 263 >gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium acetobutylicum ATCC 824] gi|50401136|sp|Q97I09|ISPH_CLOAB RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase gi|15024823|gb|AAK79811.1|AE007693_9 penicillin tolerance LytB domain/S1 ribosomal protein fusion [Clostridium acetobutylicum ATCC 824] Length = 642 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + ++++ ++ K +E + + + + G+++ G VKR+ V++ DG++ E Sbjct: 458 IVASRRALLSKEKEKVEETVWNKLE--EGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEI 515 Query: 171 I------SRENLRPGDRVKSYIYDVRREQRGPQVLL 200 + L+ GD++K Y+ V +E + + + Sbjct: 516 SWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSV 551 >gi|323705353|ref|ZP_08116928.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535255|gb|EGB25031.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 365 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 16/82 (19%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G++I+G VK + V VDLG DG+I E + L GDRV Y+ + Sbjct: 187 REGQVINGVVKSITKFGVFVDLGGIDGLIPLREISWSKNVNINDVLHIGDRVDVYVDKID 246 Query: 191 REQRGPQVLLSRTHPQFMVKLF 212 +E ++ LS + KLF Sbjct: 247 QE----KITLS------LKKLF 258 >gi|303391399|ref|XP_003073929.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506] gi|303303078|gb|ADM12569.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506] Length = 334 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++EE + + + ++ + + L+ GF VE LA ++ SI+GF Sbjct: 1 MSEEYQYQDAEYHSESISISELKNGGILAVDIAKLIEAGFTTVESLAFAPKRQLLSIKGF 60 Query: 402 DEETAVEIQGRA 413 + ++ A Sbjct: 61 SDVKVDKLIKEA 72 >gi|19074882|ref|NP_586388.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1] gi|19069607|emb|CAD25992.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1] Length = 334 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++EE + + + ++ + + L+ GF VE LA ++ SI+GF Sbjct: 1 MSEEYQYQDTEYHSESISISELKNGGILAVDIAKLIEAGFTTVESLAFAPKRQLLSIKGF 60 Query: 402 DEETAVEIQGRA 413 + ++ A Sbjct: 61 SDIKVDKLIKEA 72 >gi|325509261|gb|ADZ20897.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium acetobutylicum EA 2018] Length = 642 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + ++++ ++ K +E + + + + G+++ G VKR+ V++ DG++ E Sbjct: 458 IVASRRALLSKEKEKVEETVWNKLE--EGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEI 515 Query: 171 I------SRENLRPGDRVKSYIYDVRREQRGPQVLL 200 + L+ GD++K Y+ V +E + + + Sbjct: 516 SWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSV 551 >gi|284163650|ref|YP_003401929.1| NusA family KH domain protein [Haloterrigena turkmenica DSM 5511] gi|284013305|gb|ADB59256.1| NusA family KH domain protein [Haloterrigena turkmenica DSM 5511] Length = 146 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G G V+ + + + +V + D FV NAL PA V V + E+ V V Sbjct: 54 IGPEGRTVRQYEERV-GKPVRLVEDADDPEAFVANALSPAAVYNVTISENDDTVAYVEVA 112 Query: 314 KEQLSLAIGRRGQNVRLASQL 334 E +AIG G+ + A L Sbjct: 113 DEDRGVAIGSNGRTIEAARTL 133 >gi|167037582|ref|YP_001665160.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856416|gb|ABY94824.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 365 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%) Query: 119 IQKVREAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 ++V + ER++ K G+I+ G VK + VD+G DG I E Sbjct: 167 QKEVLKLEREKVKKALLSNLKEGDIVEGKVKNIIDKGAFVDIGGFDGFIPLSEISWERIK 226 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 RE L GD+V YI +V + ++ LS Sbjct: 227 NPREVLGIGDKVSVYILNVDE--KKEKITLS 255 >gi|153810812|ref|ZP_01963480.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174] gi|149833208|gb|EDM88290.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174] Length = 359 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-------------PPMDFGRVAVQSAK 115 V +V + ++++ AR P+ + L R + + K Sbjct: 114 VTQVLDGGLCVNVEEARVFIPASLVSDTYEKDLSKYADKEIEFVITEFNPRRRRIIGNRK 173 Query: 116 QVIIQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 Q+++ AE+ + E +K VG+ ++GTVK V +DLG +DG++ E Sbjct: 174 QLLL-----AEKAEKQKELMEKIHVGDTVTGTVKNVTDFGAFIDLGGADGLLHISEMSWG 228 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ GD V+ I ++ G ++ LS P+ Sbjct: 229 RVENPKKVFNVGDEVRVLIKEI----NGDKIALSMKFPE 263 >gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] gi|13878703|sp|Q9YFY1|RADA_AERPE RecName: Full=DNA repair and recombination protein radA gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] Length = 319 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 47.8 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827] gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827] Length = 495 Score = 47.4 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 16/104 (15%) Query: 110 AVQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDG 163 A + KQV I + E D+ F D G+I+ GT+ +V+ V++D+G ++G Sbjct: 10 AAVAPKQVAINDIGTEEDFLAAIDKTIKYFND--GDIVEGTIVKVDRDEVLLDIGYKTEG 67 Query: 164 VIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VI E E ++ GD V++ + ++E + +++LS Sbjct: 68 VIPSRELSIKHDVDPNEVVKVGDEVEALVL--QKEDKEGRLILS 109 >gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina Ar-4] gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina Ar-4] Length = 324 Score = 47.4 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + +R + V + + + L G++ +E +A +++++ G TA I A Sbjct: 6 EEKKRIKSVKDLSGVGQAVLNKLNESGYSSLESIAVASPQDLSTVAGIPLATAQRIIKEA 65 Query: 414 REYLEGI---DITLQKKIRELG 432 R+ L+ + ++++ + Sbjct: 66 RDALDIRFKTALEIEQERASVK 87 >gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 47.4 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA +I Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] Length = 671 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 4/130 (3%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A +L F +E L E+ +I+G E A I + + + + Sbjct: 514 VGENVAKILTRT-FNSIETLMEASQEELQTIDGIGERIAESIVS---FFADERNQKIIAA 569 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 ++E GV+ GI I L I + + D+ E GG Sbjct: 570 LKEFGVTLSNPVEEGISEAISRPLEGKSIVISGTFSQHTRDEYTQIIEQLGGKKVSSISQ 629 Query: 488 LSSLGTPKDQ 497 +S + Sbjct: 630 KTSFILAGED 639 >gi|225631240|ref|ZP_03787929.1| ribosomal protein S1 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591065|gb|EEH12258.1| ribosomal protein S1 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 530 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 6/102 (5%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLE-FKDK--VGEIISGTVKRVEYGNVIVDLG-N 160 +++ + I Q E + + + + F +K G+++ G + R+ +V+VD+G Sbjct: 13 TIRKLSSNKFIEEICQGQFEDQDNTLFEDSFVNKIKEGDVVEGVITRINPNDVVVDIGLK 72 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 SDG I E + + G +++ Y+ + V+LSR Sbjct: 73 SDGRILIKELGCNDEVIIGSKIRVYVERIEDYHGN--VVLSR 112 >gi|303237351|ref|ZP_07323921.1| 30S ribosomal protein S1 [Prevotella disiens FB035-09AN] gi|302482738|gb|EFL45763.1| 30S ribosomal protein S1 [Prevotella disiens FB035-09AN] Length = 591 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 E++ G V ++ VIV++G SDG+I E L+ GD+V+ Y+ +E RG Sbjct: 43 HEHEVVEGEVISIDKKEVIVNIGYKSDGIIPASEFRYNPELKVGDKVEVYVE--NQEDRG 100 Query: 196 PQVLLS 201 Q++LS Sbjct: 101 GQLVLS 106 Score = 36.6 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ V + + +I+ EA+R Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+I+ G VK + V VDLG DG+I + E + ++ Sbjct: 207 ISHLE--KGQILEGVVKNITSYGVFVDLGGVDGLIHITDLSWGRINDPHEVVELDQKINV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|63852088|dbj|BAD98461.1| RecA homolog Rad51 [Oreochromis niloticus] Length = 336 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + +E + ++++ + ++ + L GF +E +A E+ +I+G Sbjct: 3 MRSEARVEVEEEENYGPQPLCRLEQCGISASDIKKLEDAGFHTIEAVAYAPKKELLNIKG 62 Query: 401 FDEETAVEIQGRA 413 E A +I A Sbjct: 63 ISEAKADKILTEA 75 >gi|187779599|ref|ZP_02996072.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC 15579] gi|187773224|gb|EDU37026.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC 15579] Length = 638 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 18/106 (16%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGE-IISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 ++ I++ +R+ + + + I+ G VKR V++ DG++ E Sbjct: 457 RREILKTIRDEHIE---ETWASLEKDTIVEGEVKRFTNFGAFVEINGVDGLLHVSEISWG 513 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 + L+ GD++K YI D+ +E + ++ LS + KL Sbjct: 514 RVERPEDALKVGDKIKVYILDIDKENK--KLALS------IKKLIE 551 Score = 43.9 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K +++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAVNKMNNNDNIIEVSKNEMLEYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E + GD +++ I +R E V+LS Sbjct: 320 VDLNYKSEGIIPKEEVTLNEESILKEAFKVGDEIEAKIVRIRNEDG--YVVLS 370 >gi|222478542|ref|YP_002564779.1| NusA family KH domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451444|gb|ACM55709.1| NusA family KH domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 139 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVI 311 A +G G V+ L I++V + FV +AL PA V V + E R V Sbjct: 45 AAIGQAGETVEEAERRLAK-SIELVEDADTPEAFVASALAPAAVNAVTISEQNDRVAYVE 103 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 VP+ +AIG G N+ A L DI Sbjct: 104 VPEPDRGVAIGADGANIETARTLAKRHYDI 133 >gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus DSM 4304] gi|3914552|sp|O29269|RADA_ARCFU RecName: Full=DNA repair and recombination protein radA gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304] Length = 337 Score = 47.4 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++EE + + + V A L G++ +E +A SE+A++ G Sbjct: 1 MSEESNEETKIIELE-------DIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGI 53 Query: 402 DEETAVEIQGRARE 415 E AV+I AR+ Sbjct: 54 TEGNAVKIIQAARK 67 >gi|14590190|ref|NP_142255.1| DNA repair and recombination protein RadA [Pyrococcus horikoshii OT3] gi|13878667|sp|O58001|RADA_PYRHO RecName: Full=DNA repair and recombination protein radA; Contains: RecName: Full=Pho radA intein gi|3256652|dbj|BAA29335.1| 529aa long hypothetical DNA repair protein [Pyrococcus horikoshii OT3] Length = 529 Score = 47.4 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V A L GF +E +A E+ + G E A++I AR+ Sbjct: 47 DLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKA 99 >gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. sepedonicus] gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 47.4 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 16/99 (16%) Query: 115 KQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRD 168 KQV I + AE ++ F D G++I GTV +++ V++D+G ++GVI Sbjct: 11 KQVAINDIGSAEDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLIDVGYKTEGVIPSR 68 Query: 169 ETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E E ++ GD V++ + ++E + +++LS Sbjct: 69 ELSIKHDVDPTEVVKVGDTVEALVL--QKEDKEGRLILS 105 >gi|260893017|ref|YP_003239114.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii KC4] gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii KC4] Length = 654 Score = 47.0 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 + GEI+ GTV + G V+VD+G ++GVI E E ++ GD + ++ V Sbjct: 295 RGGEIVRGTVVEINQGEVLVDIGAKTEGVIPLRELCCCEVSSPHEVVKVGDEIDVFV--V 352 Query: 190 RREQRGPQVLLS 201 + E +++LS Sbjct: 353 KAEDAEGRIILS 364 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVR 190 + G ++ G V+R+ +DLG DG++ E E L+ G ++ + V Sbjct: 468 QEGAVVKGVVRRIVPFGAFIDLGGVDGLLHVSEIAWHRVNSPDEVLKEGQEIEVKVIKVD 527 Query: 191 REQRGPQVLLSRTH--PQFMVKLFHMEVPE 218 RE +V LSR P K VPE Sbjct: 528 RENE--KVSLSRKALLPDPWEK-----VPE 550 >gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] Length = 322 Score = 47.0 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L+ G+ D ++A I E+ IEG E+ A ++ ARE Sbjct: 1 MADNLTDLPGVGPSTAEKLIEAGYIDFMKIATATIGELTDIEGISEKAAAKMIMGARE 58 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 17/75 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +++ L +PG+ L E G D + + G + +G Sbjct: 1 MADNLTDLPGVGPSTAEKLIEAGYI-----------DFMKIATATIGELTDIEGI----- 44 Query: 493 TPKDQVESMIIHARY 507 + MI+ AR Sbjct: 45 -SEKAAAKMIMGARE 58 >gi|126460698|ref|YP_001056976.1| transcription elongation factor NusA-like protein [Pyrobaculum calidifontis JCM 11548] gi|126250419|gb|ABO09510.1| NusA family KH domain protein [Pyrobaculum calidifontis JCM 11548] Length = 144 Score = 47.0 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVI 311 VG G+ V+ + + + +++V + N+L PA V V + + Sbjct: 50 VGKGGANVKMLRQII-GKDVEVVEAGDTPEELIKNSLYPARVIVVKITKAPSGAKVAITT 108 Query: 312 VPKEQLSLAIGRRGQNV 328 V E +AIG+ G+N+ Sbjct: 109 VVPEDKGIAIGKNGRNI 125 >gi|256752965|ref|ZP_05493790.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748148|gb|EEU61227.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 364 Score = 47.0 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I+ G VK + VD+G DG I E RE L GD+V YI V Sbjct: 189 KEGDIVEGRVKNIIDKGAFVDIGGFDGFIPLSEISWERIKNPREVLGMGDKVSIYILKVD 248 Query: 191 REQRGPQVLLS 201 + ++ LS Sbjct: 249 EKNE--KITLS 257 >gi|189237154|ref|XP_973939.2| PREDICTED: similar to igf2 mRNA binding protein, putative [Tribolium castaneum] Length = 1116 Score = 47.0 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 42/122 (34%) Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDEK-IDIV-----VWS----- 280 + VGA +G +GS ++ ++ E ++E+ + IV W Sbjct: 359 NAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPEAQWKAQYLI 418 Query: 281 -PDSAT--FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 FV + D+ +E++VP Q+ IG+ GQNVR ++TG Sbjct: 419 FEKMREEGFVAGS-----------DDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGS 467 Query: 338 TI 339 I Sbjct: 468 VI 469 >gi|307167464|gb|EFN61037.1| DNA repair protein RAD51-like protein 1 [Camponotus floridanus] Length = 340 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 T T+++ TEEE + ++ + L G+ VE +A + Sbjct: 4 TASTVNVQTEEELDEYTPAKLIKA----LEKNGITAGDIKKLQDAGYYTVESVAYAPRKD 59 Query: 395 IASIEGFDEETAVEIQGRARE 415 + +I+G E A ++ A + Sbjct: 60 LITIKGISEAKADKLLQEASK 80 >gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM 12042] gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM 12042] Length = 731 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 86/209 (41%), Gaps = 44/209 (21%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI-----SLFRLLEVVEEVENY 75 I+R +++ +++ +A + M+++ I+ ++ ++R++ V+++ Sbjct: 518 GINR----AILEEALAQAKKGRAEIMANMMAAISEPRPEVSPYAPKMYRMMIPVDKI--- 570 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPM------DFGRVAVQSAKQVIIQKVREAERDR 129 ++ + + I V + + A+ A + I Q +REA Sbjct: 571 -REVIGTGGKMINQIIADCDNVKIDIEDDGSVVIYHSDKNAIMKAAETINQILREA---- 625 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVI-------RRDETISRENLRPGDR 181 KVGEI G V R+E V+L +DG++ +R E + L+ GD Sbjct: 626 -------KVGEIYDGKVVRLEKFGAFVELFPGTDGLLHVSKIDYKRVEK-PEDVLKLGDV 677 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 +K + ++ + R V +S H M K Sbjct: 678 IKVIVTEIDEKGR---VNVS--HRDLMEK 701 >gi|300914328|ref|ZP_07131644.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561] gi|307724436|ref|YP_003904187.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp. X513] gi|300889263|gb|EFK84409.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561] gi|307581497|gb|ADN54896.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513] Length = 367 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I+ G VK + VD+G DG I E RE L GD+V YI V Sbjct: 189 KEGDIVEGRVKNIIDKGAFVDIGGFDGFIPLSEISWERIKNPREVLGMGDKVSIYILKVD 248 Query: 191 REQRGPQVLLS 201 + ++ LS Sbjct: 249 EKNE--KITLS 257 >gi|4996226|dbj|BAA78377.1| Rad51 [Cynops pyrrhogaster] Length = 337 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 + E+ + Q + A +V L GF VE +A E+ +I+G Sbjct: 11 SATEEESLGPQPIARLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELLNIKGIS 65 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 66 EAKADKILAEA 76 >gi|213581727|ref|ZP_03363553.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 36 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 20/35 (57%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAAR 40 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATK 36 >gi|225630820|ref|YP_002727611.1| ribosomal protein S1 [Wolbachia sp. wRi] gi|225592801|gb|ACN95820.1| ribosomal protein S1 [Wolbachia sp. wRi] Length = 550 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEF---KDKVGEIISGTVKRVEYGNVIVDLG-N 160 +++ + I Q E + + + + K K G+++ G + R+ +V+VD+G Sbjct: 13 TIRKLSSNKFIEEICQGQFEDQDNTLFEDSFVNKIKEGDVVEGVITRINPNDVVVDIGLK 72 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 SDG I E + + G +++ Y+ + V+LSR Sbjct: 73 SDGRILIKELGCNDEVIIGSKIRVYVERIEDYHGN--VVLSR 112 >gi|167040244|ref|YP_001663229.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp. X514] gi|166854484|gb|ABY92893.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514] Length = 365 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I+ G VK + VD+G DG I E RE L GD+V YI V Sbjct: 187 KEGDIVEGRVKNIIDKGAFVDIGGFDGFIPLSEISWERIKNPREVLGMGDKVSIYILKVD 246 Query: 191 REQRGPQVLLS 201 + ++ LS Sbjct: 247 EKNE--KITLS 255 >gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5] gi|13878699|sp|Q9V233|RADA_PYRAB RecName: Full=DNA repair and recombination protein radA gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination protein radA [Pyrococcus abyssi GE5] Length = 356 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V A L GF +E +A E+ + G E A++I AR+ Sbjct: 46 DLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKA 98 >gi|42520896|ref|NP_966811.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410637|gb|AAS14745.1| ribosomal protein S1, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 550 Score = 47.0 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEF---KDKVGEIISGTVKRVEYGNVIVDLG-N 160 +++ + I Q E + + + + K K G+++ G + R+ +V+VD+G Sbjct: 13 TIRKLSSNKFIEEICQGQFEDQDNTLFEDSFVNKIKEGDVVEGVITRINPNDVVVDIGLK 72 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 SDG I E + + G +++ Y+ + V+LSR Sbjct: 73 SDGRILIKELGCNDEVIIGSKIRVYVERIEDYHGN--VVLSR 112 >gi|254430923|ref|ZP_05044626.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001] gi|197625376|gb|EDY37935.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001] Length = 422 Score = 47.0 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + EN G + +V E Sbjct: 234 EKEGKVVQVKVNGFNRGGVTCDLEGLRGFIPRSQLQEGENHEALVGKTLGVTFLEVNPET 293 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G+V Sbjct: 294 R--KLVLSEKRAATAARFAELEVGQLVEGVV 322 Score = 37.0 bits (85), Expect = 9.0, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%) Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKS 184 +F G +++G V +E V VD+ G + G + + E T +E G +V+ Sbjct: 143 QDFVGSTGGVVTGEVIGLESDGVYVDIGGKAPGFMPKKEAGLGVITNLKERFPKGTQVEV 202 Query: 185 YIYD 188 + Sbjct: 203 LVTR 206 >gi|325298110|ref|YP_004258027.1| RNA binding S1 domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317663|gb|ADY35554.1| RNA binding S1 domain protein [Bacteroides salanitronis DSM 18170] Length = 596 Score = 47.0 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 97 VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNV 154 + D P DF A +S + + E+++ Y +KVG E++ GTV + V Sbjct: 4 LKDVKPIEDFNWDAYESG--ESASSISKEEQEKAYDNTLNKVGDHEVVDGTVIAMNKREV 61 Query: 155 IVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 +V++G SDG+I E +L+ GD V+ YI +E + Q++LS Sbjct: 62 VVNIGYKSDGIIPLSEFRYNPDLKVGDTVEVYIE--NQEDKKGQLILS 107 >gi|56750057|ref|YP_170758.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301] gi|81300400|ref|YP_400608.1| RNA binding S1 [Synechococcus elongatus PCC 7942] gi|3122813|sp|O33698|RS1_SYNE7 RecName: Full=30S ribosomal protein S1 gi|2570205|gb|AAB82045.1| ribosomal protein S1 of 30S ribosome [Synechococcus elongatus PCC 7942] gi|7328457|dbj|BAA92864.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301] gi|22002498|gb|AAM82650.1| ribosomal protein S1 [Synechococcus elongatus PCC 7942] gi|56685016|dbj|BAD78238.1| nucleic acid binding protein [Synechococcus elongatus PCC 6301] gi|81169281|gb|ABB57621.1| RNA binding S1 [Synechococcus elongatus PCC 7942] Length = 295 Score = 47.0 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 15/107 (14%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN------LRPGDRVKSYIYDVRR 191 VG++I+G V ++ V VDLG + ++ ++ + + GD +++ + + Sbjct: 192 VGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDN 251 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 + ++ LS K+ EI + +++A + D RA+ Sbjct: 252 TKG--RISLS-------TKVLENHPGEILENVAELQASAADRAERAR 289 >gi|288927739|ref|ZP_06421586.1| ribosomal protein S1 [Prevotella sp. oral taxon 317 str. F0108] gi|288330573|gb|EFC69157.1| ribosomal protein S1 [Prevotella sp. oral taxon 317 str. F0108] Length = 591 Score = 46.6 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 128 DRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ++ Y E +K +++ GTV ++ VIV++G SDGVI E +L+ GD V+ Sbjct: 32 EKAYDETLNKVSEHQVVDGTVISIDKKEVIVNIGYKSDGVIPASEFRYNPDLKVGDTVEV 91 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMV 209 YI +E + Q++LS + Sbjct: 92 YIE--NQEDKKGQLILSHKKARLSK 114 >gi|116072199|ref|ZP_01469466.1| RNA binding S1 [Synechococcus sp. BL107] gi|116064721|gb|EAU70480.1| RNA binding S1 [Synechococcus sp. BL107] Length = 412 Score = 46.6 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + EN + G + +V Sbjct: 224 EKEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFLEVNSGT 283 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ +G+V Sbjct: 284 R--KLVLSEKRASVAARFQELEVGQLVDGLV 312 >gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM 3638] gi|13878669|sp|O74036|RADA_PYRFU RecName: Full=DNA repair and recombination protein radA gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638] gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638] Length = 349 Score = 46.6 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + V A L G+ +E +A E+ + G E TA++I AR+ Sbjct: 33 IIRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 91 >gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula palustris E1-9c] gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula palustris E1-9c] Length = 327 Score = 46.6 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 21/52 (40%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L GF VE +A +E+A E +A +I ARE Sbjct: 10 DLPGVGPTTAEKLRDAGFLTVESIATASPTELAEAAEIGEASAKKIIKAARE 61 >gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365] gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365] Length = 586 Score = 46.6 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 17/149 (11%) Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 E L + G +E+A + + E+ +I+G TA +I RE L+ I +K+R Sbjct: 41 ESAIQGLSSHG----DEIAQMSVRELKAIDGVGASTAAKI----RELLDTGAIDKLEKLR 92 Query: 430 ELGVSE--ELCSIPGIDSKIKVAL-GENGIKTMEDL-AGCSVDDLLGWSENKGGNIEKFD 485 EL IPG+ K + L GE + +++DL L S + + Sbjct: 93 AKYPPAFVELSRIPGLGPKTLMRLRGELDVHSVDDLRKALEAKKLRTLSGFGAKSEDNLR 152 Query: 486 GFLSSLGTPKDQ-----VESMIIHARYKM 509 + LG +++ I R Sbjct: 153 RAIERLGMSGKDRRTPIADALPIAQRITA 181 >gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada) gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada) gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada) gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada) gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada) gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada) gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada) Length = 349 Score = 46.6 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + V A L G+ +E +A E+ + G E TA++I AR+ Sbjct: 33 IIRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 91 >gi|291280464|ref|YP_003497299.1| 30S ribosomal protein S1 [Deferribacter desulfuricans SSM1] gi|290755166|dbj|BAI81543.1| 30S ribosomal protein S1 [Deferribacter desulfuricans SSM1] Length = 566 Score = 46.6 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + RD IG V + + ++ + +++++ +Q+V E E+ + KVG+++ G Sbjct: 149 KQRDDEYYIGKVFNVKILRINKRDKSFLASRKIYMQEVAEEEKKHFFE--TAKVGDLVKG 206 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 VK ++ V VDLG D ++R+ + L D+V+ I ++ E + ++ Sbjct: 207 RVKSIKNYGVFVDLGPVDAFLKRENISWGRVRHPNQFLEIDDKVEGVIINLDPENQKVEI 266 >gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [uncultured methanogenic archaeon RC-I] gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [uncultured methanogenic archaeon RC-I] Length = 323 Score = 46.6 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L G+ +E +A SE+A+ E TA +I A++ Sbjct: 9 DLPGVGPATAEKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAAAKK 60 >gi|328479980|gb|EGF49016.1| transcription elongation factor NusA [Lactobacillus rhamnosus MTCC 5462] Length = 69 Score = 46.6 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 21/34 (61%) Query: 324 RGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +GQN RLA++LTG+ IDI E E + +E Sbjct: 26 KGQNARLAAKLTGYKIDIKPESEVEFVDDDELSE 59 >gi|83814780|ref|YP_445904.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855] gi|83756174|gb|ABC44287.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855] Length = 871 Score = 46.6 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 12/170 (7%) Query: 69 VEEVENYTCQISLKV-ARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E + T +S R + G + + + A + + R+ Sbjct: 128 VSEFDEPTETVSPDELERTEEAQGFTGETYGETVSLDELETEEQAPADTSVYDQFRDVVD 187 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + + +I+ G V RV V++D+G SDG++ RDE E + PGD V+ Y+ Sbjct: 188 ETSID---VREQDIVEGRVLRVNEDYVVIDIGYKSDGIVSRDE-FGEEEIHPGDTVEVYL 243 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA--VSRDPG 234 R+E R Q++LS+ + + V EIY ++ + R G Sbjct: 244 E--RKEDRDGQLVLSKEQADKVRRW--QRVEEIYENEEVIEGTIIRRIKG 289 >gi|156742613|ref|YP_001432742.1| hypothetical protein Rcas_2652 [Roseiflexus castenholzii DSM 13941] gi|156233941|gb|ABU58724.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941] Length = 437 Score = 46.6 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +++L IPGI I L GI T LA CS DL W+ I + + Sbjct: 106 PADDLQQIPGIGPAIARRLRTAGITTFAALAACSPSDLAAWTGRSAEQIVRMGWIERARD 165 Query: 493 TP 494 Sbjct: 166 LT 167 >gi|322806046|emb|CBZ03613.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum H04402 065] Length = 638 Score = 46.6 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D R + +++ I++ +R + + Sbjct: 414 VFIPASHIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKIIRNKHIEETW 473 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ GD++K Y Sbjct: 474 NSLE--KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 531 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFH 213 I D+ +E + ++ LS + KL Sbjct: 532 ILDIDKENK--KLALS------IKKLIE 551 Score = 44.3 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 57/113 (50%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD++++ I ++ E V+LS Sbjct: 320 VDLNYKSEGIIPKEEVTLDEESILKESFKVGDKIEAKIVRIKNEDG--YVVLS 370 >gi|90655539|gb|ABD96378.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A Synechococcus GOM 3O12] Length = 408 Score = 46.6 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYD 188 EF +K G+++ V G V DL G I R + EN + G + + Sbjct: 216 VKEF-EKEGKVVQVVVNGFNRGGVTCDLEGLRGFIPRSQLEDGENHQELVGKTLGVAFIE 274 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 V E R +++LS+ + +EV ++ G+V Sbjct: 275 VNSETR--KLVLSQKRAAVAARFQELEVGQLVEGVV 308 >gi|170758634|ref|YP_001787128.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum A3 str. Loch Maree] gi|169405623|gb|ACA54034.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A3 str. Loch Maree] Length = 638 Score = 46.6 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D R + +++ I++ +R + + Sbjct: 414 VFIPASHIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKTIRNEHIEETW 473 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ GD++K Y Sbjct: 474 NSLE--KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 531 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFH 213 I D+ +E + ++ LS + KL Sbjct: 532 ILDIDKENK--KLALS------IKKLIE 551 Score = 43.9 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD +++ I ++ E V+LS Sbjct: 320 VDLNYKSEGIIPKEEVTLNEESILKESFKVGDEIEAKIVRIKNEDG--YVVLS 370 >gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411] Length = 516 Score = 46.6 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 16/111 (14%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 D + + QV I + AE D F D G+I+ GTV +V++ V++D Sbjct: 23 SKDIQHMPTNNVPQVAINDIGSAEDFLAAVDSTIKYFND--GDIVEGTVVKVDHDEVLLD 80 Query: 158 LG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 +G ++GVI E E + GD + + + +E + +++LS Sbjct: 81 IGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVL--TKEDKEGRLILS 129 >gi|261403642|ref|YP_003247866.1| NusA family KH domain protein [Methanocaldococcus vulcanius M7] gi|261370635|gb|ACX73384.1| NusA family KH domain protein [Methanocaldococcus vulcanius M7] Length = 174 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ + +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKTAEEKF-GKKVDIIEYSDDWRKFIRNIFAPIHLEDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQN 327 + V G +G+N Sbjct: 103 FIKVSPRSRKAIFGEKGKN 121 >gi|145590377|ref|YP_001152379.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282145|gb|ABP49727.1| DEAD/DEAH box helicase domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 710 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 V + A +L GF + ++A + EIAS+ GF E+ A I +AR+ +EG Sbjct: 656 GVGRVRARVLYNFGFRTLRDIARASVREIASLPGFGEKLAESIIEQARQLVEGNA 710 >gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542] gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542] Length = 496 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 16/103 (15%) Query: 111 VQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGV 164 +SA QV I + AE D F D G+I+ GT+ +V+ V++D+G ++GV Sbjct: 7 AKSAPQVAINDIGTAEDFLAAIDATIKYFND--GDIVEGTIVKVDRDEVLLDIGYKTEGV 64 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 I E E ++ GD V++ + ++E + +++LS Sbjct: 65 IPSRELSIKHDVDPGEVVKVGDAVEALVL--QKEDKEGRLILS 105 >gi|47086005|ref|NP_998371.1| DNA repair protein RAD51 homolog 1 [Danio rerio] gi|38571810|gb|AAH62849.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Danio rerio] Length = 338 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L GF VE +A E+ +I+G E A +I A Sbjct: 27 LEQSGISSSDIKKLEDGGFHTVEAVAYAPKKELLNIKGISEAKADKILTEA 77 >gi|283779540|ref|YP_003370295.1| hypothetical protein Psta_1760 [Pirellula staleyi DSM 6068] gi|283437993|gb|ADB16435.1| hypothetical protein Psta_1760 [Pirellula staleyi DSM 6068] Length = 775 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 18/156 (11%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 +E S K R A ++ E + L G V +L ++AS Sbjct: 622 SERPASSGSDKFKLHRKDAVKDAPSIGEKTSQRLHVVGVRTVGDLLETNPVQLASKLKMS 681 Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDL 462 TA I+ +E C +PGI L +GI+T EDL Sbjct: 682 HITADTIRQWQKESTLC------------------CRMPGIAGHDAQILVASGIETPEDL 723 Query: 463 AGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQV 498 A D++L E + E SS +++V Sbjct: 724 AELPADEVLQLIEPLIESSEGKRILRSSAPPDREEV 759 >gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola SANAE] gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola SANAE] Length = 323 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L G+ +E +A SE+A+ E TA +I A++ Sbjct: 9 DLPGVGPATADKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAAAKK 60 >gi|55251281|emb|CAH69022.1| novel protein (zgc:77754) [Danio rerio] Length = 340 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L GF VE +A E+ +I+G E A +I A Sbjct: 29 LEQSGISSSDIKKLEDGGFHTVEAVAYAPKKELLNIKGISEAKADKILTEA 79 >gi|270007202|gb|EFA03650.1| hypothetical protein TcasGA2_TC013744 [Tribolium castaneum] Length = 710 Score = 46.2 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 42/122 (34%) Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDEK-IDIV-----VWS----- 280 + VGA +G +GS ++ ++ E ++E+ + IV W Sbjct: 510 NAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPEAQWKAQYLI 569 Query: 281 -PDSAT--FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 FV + D+ +E++VP Q+ IG+ GQNVR ++TG Sbjct: 570 FEKMREEGFVAGS-----------DDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGS 618 Query: 338 TI 339 I Sbjct: 619 VI 620 >gi|302769123|ref|XP_002967981.1| hypothetical protein SELMODRAFT_408953 [Selaginella moellendorffii] gi|300164719|gb|EFJ31328.1| hypothetical protein SELMODRAFT_408953 [Selaginella moellendorffii] Length = 453 Score = 46.2 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +Q + + L GF VE +A E+ I+G E +I A Sbjct: 29 LQHCGISAVDVKKLREAGFCTVEAVAYSPKKELLKIKGISEAKVDKITEAA 79 >gi|168184863|ref|ZP_02619527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein S1 homolog [Clostridium botulinum Bf] gi|237795216|ref|YP_002862768.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672058|gb|EDT84019.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein S1 homolog [Clostridium botulinum Bf] gi|229260583|gb|ACQ51616.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein S1 [Clostridium botulinum Ba4 str. 657] Length = 644 Score = 46.2 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 16/148 (10%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D + + +++ I++ +R+ + + Sbjct: 420 VFIPASHIELSHVDDLERYKGLELEVNIIEFIKDRYKTKIVGSRRNILKTIRDEHIEETW 479 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ GD++K Y Sbjct: 480 NSLE--KDTVVEGEVKRFTNFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 537 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFH 213 I D+ +E + ++ LS + KL Sbjct: 538 ILDIDKENK--KLALS------IKKLIE 557 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 16/94 (17%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE---- 169 K ++ + E E+ VG+++ GT+ + + VDL S+G+I ++E Sbjct: 292 KNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLD 344 Query: 170 --TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 +I +E+ + GD +++ I ++ E V+LS Sbjct: 345 EESILKESFKVGDEIEAKIVRIKNEDG--YVVLS 376 >gi|332983086|ref|YP_004464527.1| ribosomal protein S1 [Mahella australiensis 50-1 BON] gi|332700764|gb|AEE97705.1| ribosomal protein S1 [Mahella australiensis 50-1 BON] Length = 271 Score = 46.2 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K K G+IIS V V +VIVD + I R+E + + ++ GDRVK+ I + Sbjct: 112 KHKAGDIISARVVGVGRNSVIVDCYGLEVRIARNEIDYGYVGNAGDYVQIGDRVKAVIKE 171 Query: 189 VRREQRGPQVLLS 201 + P+V LS Sbjct: 172 IDLTGDEPKVKLS 184 >gi|316978565|gb|EFV61540.1| DNA repair and recombination protein RadA [Trichinella spiralis] Length = 364 Score = 46.2 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I+ +EE N R + F NVD L GF +E +A + I+G Sbjct: 34 IMPQEEMEENFGPQPISRLEQF-GIPNVD---IKKLEEAGFYTIESVAFTPKKVLIDIKG 89 Query: 401 FDEETAVEIQGRARE 415 E A +I A + Sbjct: 90 ISEAKADKILSEASK 104 >gi|294507814|ref|YP_003571872.1| 30S ribosomal protein S1 [Salinibacter ruber M8] gi|294344142|emb|CBH24920.1| 30S ribosomal protein S1 [Salinibacter ruber M8] Length = 876 Score = 46.2 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 130 QYLEFKD---------KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 Y +F+D + +I+ G V RV V++D+G SDG++ RDE E + PG Sbjct: 178 VYDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVVIDIGYKSDGIVSRDE-FGEEEIHPG 236 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA--VSRDPG 234 D V+ Y+ R+E R Q++LS+ + + V EIY ++ + R G Sbjct: 237 DTVEVYLE--RKEDRDGQLVLSKEQADKVRRW--QRVEEIYENEEVIEGTIIRRIKG 289 >gi|320120527|gb|ADW16175.1| hypothetical protein HMPREF0389_01731 [Filifactor alocis ATCC 35896] Length = 394 Score = 46.2 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 E ++ Y E G I+ G V+RV+ + + L +DGV+ R E E L+ GD V Sbjct: 10 QEEEQNYEEV--YRGSIVKGYVERVKPDSYYITLNYKTDGVLPRSEMSGDEELQVGDEVS 67 Query: 184 SYIYDVRREQRGPQVLLS 201 + + + +++LS Sbjct: 68 LEVIKIDKNTG--EIILS 83 >gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula DSM 5348] gi|226736609|sp|A4YCN4|RADA_METS5 RecName: Full=DNA repair and recombination protein radA gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula DSM 5348] Length = 324 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + +R + V + + + L G++ +E +A ++++ G TA I A Sbjct: 6 EEKKRIKTVKDLSGVGQAVLNKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRIIKEA 65 Query: 414 REYLEGI---DITLQKKIRELG 432 R+ L+ + ++++ + Sbjct: 66 RDALDIRFKTALEIEQERASVK 87 >gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484] Length = 510 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E ++ GD V++ + ++ Sbjct: 59 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVL--QK 116 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 117 EDKEGRLILS 126 >gi|160880581|ref|YP_001559549.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium phytofermentans ISDg] gi|160429247|gb|ABX42810.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium phytofermentans ISDg] Length = 643 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 30/169 (17%) Query: 61 SLFRLLEV----VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-------------P 103 F EV V V + + + AR P+ L Sbjct: 385 EAFNNKEVLKAKVAAVLDGGLSVIVDEARIFIPASLASDTYEKNLDKFKDQEIEFVISEF 444 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 R + KQ+++ K +E + K KVG+++ GTVK V +DLG +DG Sbjct: 445 NPKRRRIIGDRKQLLVAKKQEL-SKALFA--KIKVGDVVEGTVKNVTDFGAFIDLGGADG 501 Query: 164 VIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ E ++ + GD VK++I D++ G ++ LS P+ Sbjct: 502 LLHISEMSWGRIESPKKVFKVGDTVKAFIKDIQ----GEKIALSLKFPE 546 >gi|153941510|ref|YP_001391062.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum F str. Langeland] gi|152937406|gb|ABS42904.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum F str. Langeland] gi|295319111|gb|ADF99488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein [Clostridium botulinum F str. 230613] Length = 638 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D R + +++ I++ +R + + Sbjct: 414 VFIPASHIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKTIRNKHIEETW 473 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ GD++K Y Sbjct: 474 NSLE--KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 531 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFH 213 I D+ +E + ++ LS + KL Sbjct: 532 ILDIDKENK--KLALS------IKKLIE 551 Score = 43.9 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 57/113 (50%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD++++ I ++ E V+LS Sbjct: 320 VDLNYKSEGIIPKEEVTLDEESILKESFKVGDKIEAKIVRIKNEDG--YVVLS 370 >gi|302338566|ref|YP_003803772.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293] gi|301635751|gb|ADK81178.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293] Length = 571 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 7/86 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 G+++ G+V +V NV VD+G S+G I E GD V + VR+E +G Sbjct: 32 EGQLVEGSVIQVGPENVFVDVGYKSEGKIPLSE--FETTPEIGDIVNVVL--VRKEGKGG 87 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNG 222 QV++S+ VKLF E+ E ++ Sbjct: 88 QVVVSKNKAD--VKLFWKELREAFDN 111 >gi|284162501|ref|YP_003401124.1| DNA repair and recombination protein RadA [Archaeoglobus profundus DSM 5631] gi|284012498|gb|ADB58451.1| DNA repair and recombination protein RadA [Archaeoglobus profundus DSM 5631] Length = 805 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V IA L G+ +E +A +E++++ E TA++I AR+ Sbjct: 12 LEDLPGVGSAIAEKLREAGYDSIELIAVSSPAELSAVADIGEATALKIITAARK 65 >gi|168180380|ref|ZP_02615044.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum NCTC 2916] gi|226949048|ref|YP_002804139.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|182668877|gb|EDT80855.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum NCTC 2916] gi|226843882|gb|ACO86548.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A2 str. Kyoto] Length = 638 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D R + +++ I++ +R + + Sbjct: 414 VFIPASHIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKTIRNKHIEETW 473 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ GD++K Y Sbjct: 474 NSLE--KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 531 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFH 213 I D+ +E + ++ LS + KL Sbjct: 532 ILDIDKENK--KLALS------IKKLIE 551 Score = 43.5 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD +++ I ++ E V+LS Sbjct: 320 VDLSYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKNEDG--YVVLS 370 >gi|153937572|ref|YP_001387604.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum A str. Hall] gi|152933486|gb|ABS38985.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A str. Hall] Length = 638 Score = 46.2 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 22/184 (11%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP--ETGDISLFRLLEVVEEVENYTC 77 K + R+ VL + ++ + I+V + + G I ++ + V Sbjct: 372 KELHREKVLKNLKEA--------FENKQTIKVIVKDAVDAGLICIYNGVRV----FIPAS 419 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 I L D + + V+ D R + +++ I++ +R + + + Sbjct: 420 HIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKTIRNKHIEETWNSLE-- 477 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 ++ G VKR +++ DG++ E + L+ GD++K YI D+ + Sbjct: 478 KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVYILDIDK 537 Query: 192 EQRG 195 E + Sbjct: 538 ENKK 541 Score = 43.5 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD +++ I ++ E V+LS Sbjct: 320 VDLSYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKNEDG--YVVLS 370 >gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268] gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268] Length = 367 Score = 46.2 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 60/132 (45%), Gaps = 12/132 (9%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + + +RD + G + + + + + ++ I+ +++ + D+ + E K G+ Sbjct: 138 VSDSFERDLNKYQGQDIQFVITEFNPAKRRIIGDRKQIMSAMKKEQHDKLFSELK--EGD 195 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 I +G VK + +DLG +DG++ E ++ +PG V+ + ++ Sbjct: 196 IRTGVVKNLTDFGAFIDLGGADGLLHISEMSWGRIENPKKLFKPGQEVEVLVKEIS---- 251 Query: 195 GPQVLLSRTHPQ 206 G ++ L+R P Sbjct: 252 GERIALTRKFPN 263 >gi|150401406|ref|YP_001325172.1| DNA repair and recombination protein RadA [Methanococcus aeolicus Nankai-3] gi|150014109|gb|ABR56560.1| DNA repair and recombination protein RadA [Methanococcus aeolicus Nankai-3] Length = 322 Score = 46.2 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 T V A L+ G+ D ++A I E+ IEG E+ A ++ AR+ Sbjct: 1 MTDNLTDLPGVGPSTAEKLIEGGYIDFMKIATATIGELVDIEGISEKAAAKMIMGARD 58 Score = 37.7 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 17/74 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +++ L +PG+ L E G D + + G + +G Sbjct: 1 MTDNLTDLPGVGPSTAEKLIEGGYI-----------DFMKIATATIGELVDIEGI----- 44 Query: 493 TPKDQVESMIIHAR 506 + MI+ AR Sbjct: 45 -SEKAAAKMIMGAR 57 >gi|118430925|ref|NP_147034.2| holliday junction migration helicase [Aeropyrum pernix K1] gi|150421571|sp|Q9YFQ8|HELS_AERPE RecName: Full=Putative ski2-type helicase gi|116062250|dbj|BAA79103.2| holliday junction migration helicase [Aeropyrum pernix K1] Length = 735 Score = 46.2 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ V + A +L G+ +E+LA + ++ + TA +I E+L +D Sbjct: 649 LVEIPGVGRVRARILFEAGYRSIEDLATARAEDLMRLPLIGPSTARQIL----EFLGRVD 704 Query: 422 ITLQKKIRELGVSEELCS-IPG 442 + + RE+ + L S + G Sbjct: 705 EAREAEAREMLARKGLLSYLEG 726 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 422 ITLQKKIRELGVSEELCSI---PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +++ + + GV EL + PG+ L E G +++EDLA +DL+ Sbjct: 631 LSVIARRIKHGVKPELLQLVEIPGVGRVRARILFEAGYRSIEDLATARAEDLMRLPLIGP 690 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARY-KMGWIEKEKVADEEVQ 523 + FL + ++ E+ + AR + ++E + VA EE + Sbjct: 691 STARQILEFLGRVDEARE-AEAREMLARKGLLSYLEGDAVAGEEGE 735 >gi|148379766|ref|YP_001254307.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum A str. ATCC 3502] gi|153931983|ref|YP_001384064.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum A str. ATCC 19397] gi|148289250|emb|CAL83346.1| Composite protein include: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (N-terminus) and an RNA-associated domain (C-terminus) [Clostridium botulinum A str. ATCC 3502] gi|152928027|gb|ABS33527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A str. ATCC 19397] Length = 638 Score = 46.2 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 8/130 (6%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D R + +++ I++ +R + + Sbjct: 414 VFIPASHIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKTIRNKHIEETW 473 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ GD++K Y Sbjct: 474 NSLE--KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 531 Query: 186 IYDVRREQRG 195 I D+ +E + Sbjct: 532 ILDIDKENKK 541 Score = 43.5 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD +++ I ++ E V+LS Sbjct: 320 VDLSYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKNEDG--YVVLS 370 >gi|213515370|ref|NP_001134027.1| DNA repair protein RAD51 homolog A [Salmo salar] gi|209156210|gb|ACI34337.1| DNA repair protein RAD51 homolog A [Salmo salar] Length = 338 Score = 45.8 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L GF +E +A E+ +I+G E A ++ A Sbjct: 27 LEQCGISASDIKKLEDAGFHTIEAVAYAPKKELLNIKGISEAKADKVLAEA 77 >gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159] gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159] Length = 443 Score = 45.8 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------S 172 +Q+ R+A + + + GE G V + V VD+G +DG++ E Sbjct: 207 VQEQRDAMKAQLIETL--REGETRRGRVTSIADFGVFVDIGGADGLVHLSEISWTRVKHP 264 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 E LR GD V + V EQR + + RT P+ Sbjct: 265 SEVLRVGDEVDVMVLSVNPEQRKIALSIRRTQPE 298 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE---TISRE--NLRPGDRVKSYIYDVR 190 + G+++ G V V+ ++VD+ G +GV+ E E LRPGDRV ++ Sbjct: 43 RYGDVVEGEVMHVDREKILVDIGGKCEGVVPSREFQTLSPEELGRLRPGDRVLVFVLQPE 102 Query: 191 REQRGPQVLLS 201 + Q +LS Sbjct: 103 DQAG--QAILS 111 >gi|291235734|ref|XP_002737805.1| PREDICTED: RAD51 homolog protein-like [Saccoglossus kowalevskii] Length = 287 Score = 45.8 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + E+ +++DF +++ + L G+ VE +A E+ I G Sbjct: 5 MQVEQQQGTQEEDFGPIPIHKLESHGISANDVKKLEDAGYHTVEAIAYAPKKELIGIRGI 64 Query: 402 DEETAVEIQG 411 + A +I Sbjct: 65 SDAKADKILN 74 >gi|302671391|ref|YP_003831351.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316] gi|302395864|gb|ADL34769.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316] Length = 379 Score = 45.8 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 12/141 (8%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + + + ++D S + + + R +++++ + Sbjct: 125 VVDEVRIFIPASLVSDSYEKDLSKYQDQEIQFVVTEYNPKRRRYIGNRKMLVSAEKAEAA 184 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDR 181 + + K G+++ G VK V +DLG +DG++ E ++ + GD Sbjct: 185 KKLFDTIKA--GDVVDGVVKNVTDFGAFIDLGGADGLLHISEMSWGRVESPKKVFKIGDT 242 Query: 182 VKSYIYDVRREQRGPQVLLSR 202 VK + + G ++ LSR Sbjct: 243 VKVLVKSID----GSKIALSR 259 >gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B] gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B] Length = 515 Score = 45.8 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E ++ GDR+++ + ++ Sbjct: 45 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDRIEALVL--QK 102 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 103 EDKDGRLILS 112 >gi|50978688|ref|NP_001003043.1| DNA repair protein RAD51 homolog 1 [Canis lupus familiaris] gi|75047603|sp|Q8MKI8|RAD51_CANFA RecName: Full=DNA repair protein RAD51 homolog 1; AltName: Full=cRad51 gi|20387091|dbj|BAB91246.1| Rad51 [Canis lupus familiaris] Length = 339 Score = 45.8 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ SI+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELISIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILTEA 78 >gi|2500103|sp|P70099|RAD51_CRIGR RecName: Full=DNA repair protein RAD51 homolog 1 gi|1552258|emb|CAA69384.1| rad51 [Cricetulus griseus] Length = 339 Score = 45.8 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ + L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGISANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILAEA 78 >gi|237752568|ref|ZP_04583048.1| 30s ribosomal protein s1 [Helicobacter winghamensis ATCC BAA-430] gi|229376057|gb|EEO26148.1| 30s ribosomal protein s1 [Helicobacter winghamensis ATCC BAA-430] Length = 560 Score = 45.8 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 15/162 (9%) Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA--- 114 G+I +VV V + + + D ++ V D LP + GR Q Sbjct: 40 GNIVAIENNQVVIAVPGEKKEGIVALDEILDAQGNLLFKVGDTLPIVITGRRNEQPIVSY 99 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE 174 K+ I ++ ++KDK I+ G V R G +V+ G+ + + + +E Sbjct: 100 KKAIRKEKVRQYIQSLGDDYKDK---IVEGVVVRRNKGGYVVESGDIEFFMPKFTAAFKE 156 Query: 175 NLRP-GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 + G ++K+ I +V+ E+ +++SR +LF +E Sbjct: 157 GSKIEGKKIKACIINVKPEED--SIVISR------KRLFELE 190 >gi|289825802|ref|ZP_06544970.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 39 Score = 45.8 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKEK 38 >gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2] gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2] Length = 354 Score = 45.8 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V A L G+ +E +A E+ + G E A++I AR+ Sbjct: 44 DLPGVGPATAEKLREAGYDSLEAIAVASPIELKEVAGISEGAALKIIQAARKA 96 >gi|190571429|ref|YP_001975787.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018827|ref|ZP_03334635.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357701|emb|CAQ55150.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995778|gb|EEB56418.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 550 Score = 45.8 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K G+++ G + R +++VD+G SDG I E +++ G +++ Y+ + Sbjct: 48 KEGDVVEGIITRRNSNDIVVDVGLKSDGRILIKELSCNDDITVGSKIRVYVERIEDYHGN 107 Query: 196 PQVLLSR 202 V+LSR Sbjct: 108 --VVLSR 112 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 57/144 (39%), Gaps = 14/144 (9%) Query: 62 LFRLLEVVEEVENYTCQISLKVAR---DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 F E+ E+VE +L ++ D ++G + + + R + + I Sbjct: 415 TFDNSEISEDVEGTIYMQNLSWSKNNSDEIKKYNVGDEIEAKVIRANVDRTRIYLGVKQI 474 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS-RENLR 177 E ++ KVG+ I TV + E +IV++ N+ ++ E + + Sbjct: 475 EYDPLEELIEKV------KVGDKIQVTVSKREENGLIVEIENNVTLLVDQEHLPENKKFS 528 Query: 178 PGDRVKSYIYDVRREQRGPQVLLS 201 ++++ + V + ++LS Sbjct: 529 ISEKIQVEVVGVEKYN----IILS 548 >gi|123966450|ref|YP_001011531.1| hypothetical protein P9515_12171 [Prochlorococcus marinus str. MIT 9515] gi|123200816|gb|ABM72424.1| Hypothetical protein P9515_12171 [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 45.8 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 T + V A LL G+ +E + E+ +I+G ++ +++ Sbjct: 196 TDLLCELDGVGGKTAGLLWDAGYLSIEAVKNAPQEELLNIKGIGKKLVEKLKS 248 >gi|313127538|ref|YP_004037808.1| nusa family kh domain protein [Halogeometricum borinquense DSM 11551] gi|312293903|gb|ADQ68363.1| NusA family KH domain protein [Halogeometricum borinquense DSM 11551] Length = 139 Score = 45.8 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEV 310 G +G RG V AV ++ +++V + + FV + L PA V V + E R V Sbjct: 44 GQAIGPRGQHVHAVEEKI-GRSVELVEDADTTEAFVESMLAPAAVRHVTISEQDDRVAYV 102 Query: 311 IVPKEQLSLAIGRRGQNVRLASQL 334 V +AIG+ G+N+ A L Sbjct: 103 EVENADRGVAIGKEGRNIETARTL 126 >gi|126458706|ref|YP_001054984.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|226740608|sp|A3MSA1|HELS_PYRCJ RecName: Full=Putative ski2-type helicase gi|126248427|gb|ABO07518.1| DEAD/DEAH box helicase domain protein [Pyrobaculum calidifontis JCM 11548] Length = 708 Score = 45.8 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI-NVDEIIAHLLVAEGFADVEE 386 +LA +L G E + E + ++ V + A L G+ +E+ Sbjct: 611 AKLA-RLVGREEHGKRLEVVTARVVYGVREELLGLVTSLRGVGRVRARTLYNFGYRTLED 669 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +A + EIAS+ GF E+ A + +AR+ L Sbjct: 670 IARATVREIASLPGFGEKLAESVIEQARQMLAE 702 >gi|288818328|ref|YP_003432676.1| ribosomal protein S1 [Hydrogenobacter thermophilus TK-6] gi|288787728|dbj|BAI69475.1| ribosomal protein S1 [Hydrogenobacter thermophilus TK-6] gi|308751925|gb|ADO45408.1| RNA binding S1 domain protein [Hydrogenobacter thermophilus TK-6] Length = 528 Score = 45.8 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + GEII V +V+ N+ VD+G +G+I R+E I + + GD +K+ + + R Sbjct: 19 RRGEIIRCKVIKVDERNIYVDVGYKVEGIIPREE-IP--DAKEGDEIKAVVTKISRGG 73 >gi|297619372|ref|YP_003707477.1| DNA repair and recombination protein RadA [Methanococcus voltae A3] gi|297378349|gb|ADI36504.1| DNA repair and recombination protein RadA [Methanococcus voltae A3] Length = 322 Score = 45.8 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + V A L G+ D ++A + E+ IEG E+ A ++ AR+ Sbjct: 1 MSDNLTDLPGVGPSTAEKLAEGGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 17/74 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +S+ L +PG+ L E G D + + G + +G Sbjct: 1 MSDNLTDLPGVGPSTAEKLAEGGYI-----------DFMKIATATVGELTDIEGI----- 44 Query: 493 TPKDQVESMIIHAR 506 + MI+ AR Sbjct: 45 -SEKAAAKMIMGAR 57 >gi|297619549|ref|YP_003707654.1| NusA family KH domain-containing protein [Methanococcus voltae A3] gi|297378526|gb|ADI36681.1| NusA family KH domain protein [Methanococcus voltae A3] Length = 189 Score = 45.8 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 +GA +G G V+ + KID++ +S D F+ N P + V Sbjct: 43 IGAAIGKGGENVRNATEKF-GRKIDLIEYSDDVKQFIRNIFAPVELEDV 90 Score = 37.7 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + A V V DE+ +I ++ + + AIG+ G+NVR A++ G ID+I +D Sbjct: 19 MTGADVIDSVADEE--KITFVIKEGDIGAAIGKGGENVRNATEKFGRKIDLIEYSDDVKQ 76 Query: 351 RQKDFNERTQF 361 ++ + Sbjct: 77 FIRNIFAPVEL 87 >gi|168186332|ref|ZP_02620967.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum C str. Eklund] gi|169295859|gb|EDS77992.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum C str. Eklund] Length = 634 Score = 45.8 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 42/192 (21%) Query: 22 IDRDVVLSVMADS-----IQKAARSL------YGTMSDIRVEINPETGDISLFRLLEVVE 70 I+R+ + ++ + G +R+ + P + + LF VE Sbjct: 372 IEREEAFKEIEEAFNNKTLLTIYIKESVKGGIIGRYKGVRIFV-PAS-HVELFH----VE 425 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ-SAKQVIIQKVREAERDR 129 ++ S+ + ++ + + ++ + VA + Q K EA + Sbjct: 426 DL-------SVYIGQEMNVN-----IIEFKVNRKGTKIVASRREFLQKEQTKKEEASWEI 473 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVK 183 K I+ G VKR+ VD+ DG++ E + L G++VK Sbjct: 474 L------KKDSIVEGEVKRLTKFGAFVDVNGIDGLLHVSEISWGRVEKPEDVLSVGEKVK 527 Query: 184 SYIYDVRREQRG 195 YI +V +E + Sbjct: 528 VYILNVDKENKK 539 >gi|329765749|ref|ZP_08257318.1| NusA family protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137815|gb|EGG42082.1| NusA family protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 154 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 10/98 (10%) Query: 252 GACVGMRGSRV---QAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDV 305 G +G G + Q +V + +++V + D A F++N L +V++V L+ + Sbjct: 48 GLAIGKGGIHIKSLQNIVKK----TVELVEFDEDPAKFLMNLLNSKLVSEVKLNTRADGS 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + V+V + + +GR G+N A L DI + Sbjct: 104 KQAIVMVDPRKKGIVVGREGRNAEKARLLAKRYFDITS 141 >gi|54696276|gb|AAV38510.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic construct] Length = 340 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|149612219|ref|XP_001512135.1| PREDICTED: similar to RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), partial [Ornithorhynchus anatinus] Length = 97 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + L GF VE +A E+ +I+G E A +I AR Sbjct: 28 LEQCGISANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAPARSAHL---- 83 Query: 423 TLQKKIRELGVSEE 436 + +LG ++E Sbjct: 84 ----EPGDLGPADE 93 >gi|60829742|gb|AAX36891.1| RAD51-like [synthetic construct] gi|61369103|gb|AAX43285.1| RAD51-like [synthetic construct] Length = 340 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis] Length = 2384 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG--NSDGVIRRDETISR-ENLRPGDRVKSYIYDVRREQ 193 K G ++SG V VE IVD+G ++ + R E + E L+ G V S + +V+ + Sbjct: 108 KAGMVLSGCVDSVEDHGYIVDIGIKGTNAFLPRKERANSQEELKVGQYVTSALEEVKNDG 167 Query: 194 RGPQVLLSR 202 R ++ +SR Sbjct: 168 RVVRLSVSR 176 >gi|397827|dbj|BAA02962.1| HsRad51 [Homo sapiens] Length = 339 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|19924133|ref|NP_002866.2| DNA repair protein RAD51 homolog 1 isoform 1 [Homo sapiens] gi|55641879|ref|XP_510313.1| PREDICTED: RAD51 homolog protein isoform 5 [Pan troglodytes] gi|114656377|ref|XP_001144621.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 3 [Pan troglodytes] gi|114656380|ref|XP_001144693.1| PREDICTED: RAD51 homolog protein isoform 4 [Pan troglodytes] gi|297696332|ref|XP_002825350.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Pongo abelii] gi|332235183|ref|XP_003266786.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Nomascus leucogenys] gi|548663|sp|Q06609|RAD51_HUMAN RecName: Full=DNA repair protein RAD51 homolog 1; Short=HsRAD51; Short=hRAD51; AltName: Full=RAD51 homolog A gi|285977|dbj|BAA03189.1| RAD51 [Homo sapiens] gi|5733658|gb|AAD49705.1| Rad51 [Homo sapiens] gi|7767554|gb|AAF69145.1| RAD51 [Homo sapiens] gi|27368250|gb|AAN87149.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo sapiens] gi|49168602|emb|CAG38796.1| RAD51 [Homo sapiens] gi|60817856|gb|AAX36441.1| RAD51-like [synthetic construct] gi|61358913|gb|AAX41640.1| RAD51-like [synthetic construct] gi|119612840|gb|EAW92434.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform CRA_d [Homo sapiens] gi|189069251|dbj|BAG36283.1| unnamed protein product [Homo sapiens] gi|261860564|dbj|BAI46804.1| RAD51 homolog [synthetic construct] Length = 339 Score = 45.4 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|256830726|ref|YP_003159454.1| 30S riboosomal protein S1 [Desulfomicrobium baculatum DSM 4028] gi|256579902|gb|ACU91038.1| ribosomal protein S1 [Desulfomicrobium baculatum DSM 4028] Length = 593 Score = 45.4 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 12/118 (10%) Query: 123 REAERDRQYLEFKD------KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR-- 173 E + + Q + + + G I+SG V +++ ++VD+ S+G I DE + Sbjct: 16 MEMDFESQLENYLNSDFGDIEEGVIVSGEVVKIDDSYILVDVNFKSEGQIPLDEFMENGQ 75 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 ++ GD V Y+ VR+ +R ++LSR + M L +E + +G V V + R Sbjct: 76 VTVKVGDTVDVYV--VRKNEREGSIVLSREKAKRMQVLDELE-KLLDSGDVVVGRIVR 130 >gi|149692472|ref|XP_001503572.1| PREDICTED: similar to DNA repair protein RAD51 homolog 1 [Equus caballus] Length = 339 Score = 45.4 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPVSRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILTEA 78 >gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1] gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1] Length = 488 Score = 45.4 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 16/99 (16%) Query: 115 KQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRD 168 KQV I + AE ++ F D G++I GTV +++ V++D+G ++GVI Sbjct: 11 KQVAINDIGSAEDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSR 68 Query: 169 ETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E E + GD V++ + ++E + +++LS Sbjct: 69 ELSIKHDVDPTEVVNVGDTVEALVL--QKEDKEGRLILS 105 >gi|296129804|ref|YP_003637054.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109] gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109] Length = 492 Score = 45.4 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E ++ GD V++ + ++ Sbjct: 39 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|256811207|ref|YP_003128576.1| NusA family KH domain protein [Methanocaldococcus fervens AG86] gi|256794407|gb|ACV25076.1| NusA family KH domain protein [Methanocaldococcus fervens AG86] Length = 174 Score = 45.4 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ + +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKKAEEKF-GKKVDIIEYSDDWRKFIRNIFAPIQLEDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQN 327 + + G +G+N Sbjct: 103 FIRINPRVRRAVFGEKGKN 121 >gi|281420270|ref|ZP_06251269.1| ribosomal protein S1 [Prevotella copri DSM 18205] gi|281405765|gb|EFB36445.1| ribosomal protein S1 [Prevotella copri DSM 18205] Length = 594 Score = 45.4 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 13/106 (12%) Query: 128 DRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ++ Y E +K +++ GTV V+ VIV++G SDG+I E +L+ GD+V+ Sbjct: 32 EKAYDETLNKVTEHQVVEGTVISVDKKEVIVNIGYKSDGIIPASEFRYNPDLKVGDKVEV 91 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMV------KLFHMEVPEIYNGIV 224 Y+ + + + +G Q++LS + E EI G + Sbjct: 92 YVEN-QEDVKG-QLVLSHKKARLSKSWERVNAALENE--EIIQGYI 133 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +F R V S K +I Q++ E +R Sbjct: 149 EAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEF-RNVVVSHKALIEQEL-EQQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+I+ GTVK + V VDLG DG+I + E + ++ Sbjct: 207 IGKLE--KGQILEGTVKNITTYGVFVDLGGVDGLIHITDLSWGRVSDPHEVVSLDQKINV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|290562245|gb|ADD38519.1| 28S ribosomal protein S28, mitochondrial [Lepeophtheirus salmonis] Length = 147 Score = 45.4 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 G+++ G V V ++ +D+G+ + R + EN R G +V+ I + Q+ Sbjct: 65 KGKVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQK 121 >gi|311244990|ref|XP_003121661.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Sus scrofa] Length = 293 Score = 45.4 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 Q + ++ L GF VE +A E+ +I+G E A +I A Sbjct: 8 QVLAKQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTEA 61 >gi|256017145|ref|NP_001157742.1| DNA repair protein RAD51 homolog 1 isoform 3 [Homo sapiens] gi|297696338|ref|XP_002825353.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 4 [Pongo abelii] gi|332235185|ref|XP_003266787.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Nomascus leucogenys] gi|332843551|ref|XP_003314669.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Pan troglodytes] gi|119612838|gb|EAW92432.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform CRA_b [Homo sapiens] gi|164506989|gb|ABY59731.1| Rad51 variant [Homo sapiens] Length = 280 Score = 45.4 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILAEA 78 >gi|110669303|ref|YP_659114.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi DSM 16790] gi|121692072|sp|Q18EU1|RADA_HALWD RecName: Full=DNA repair and recombination protein radA gi|109627050|emb|CAJ53526.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi DSM 16790] Length = 343 Score = 45.4 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE- 418 V + LV GF + +A +E+++ E TA +I AR+ + Sbjct: 4 DELEDLPGVGPATSDKLVDAGFESYQAIAVASPAEMSNTADVGESTASDIINAARDAADV 63 Query: 419 ---GIDITLQKKIRELG 432 + ++ E+G Sbjct: 64 GGFETGAAVLQRREEIG 80 >gi|54696278|gb|AAV38511.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo sapiens] Length = 339 Score = 45.4 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILAEA 78 >gi|45185912|ref|NP_983628.1| ACR226Wp [Ashbya gossypii ATCC 10895] gi|44981702|gb|AAS51452.1| ACR226Wp [Ashbya gossypii ATCC 10895] Length = 381 Score = 45.4 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEII---AHLLVAEGFADVEELACVKISEI 395 I++ E ++D ++ + V+ I L G VE +A ++ Sbjct: 39 IEVHAESGRGQGYEEDVALAAFVPLERLQVNGITNNDLKKLRENGLHTVEAVAYAPRKDL 98 Query: 396 ASIEGFDEETAVEIQGRA 413 I+G E A ++ A Sbjct: 99 LEIKGISEAKADKLLAEA 116 >gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Opitutaceae bacterium TAV2] gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Opitutaceae bacterium TAV2] Length = 555 Score = 45.4 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K G+I+SG + + V+VD+ G S+GVI +E I L+ G ++ Y+ + + Sbjct: 16 KEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQIGSTIEVYVEKLEDKNGL 75 Query: 196 PQVLLS 201 P +LS Sbjct: 76 P--VLS 79 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 + I ++ ++ D + G + ++ R + +++ +I++ R +R Sbjct: 121 DAFMPASHIDIQPPKNLDQYV--GQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNL 178 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G++ G VK + +DL DG++ + E L+ G+ ++ Sbjct: 179 LESIQP--GQVRKGVVKNITDFGAFIDLDGMDGLLHITDMSWGRIAHPSEMLKQGEEIQV 236 Query: 185 YIYDVRREQ 193 I +V R++ Sbjct: 237 MIIEVNRDK 245 >gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis KIN4/I] gi|166218760|sp|A8AB83|RADA_IGNH4 RecName: Full=DNA repair and recombination protein radA gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis KIN4/I] Length = 327 Score = 45.4 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +R + V A L+ G+ +E LA E+ +I G TA +I AR+ Sbjct: 8 EKRPTSVAELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAI-GIPLTTAQKIIRAARQ 66 Query: 416 YLE-GIDITLQKKIR 429 L+ + K+ Sbjct: 67 MLDIRFRTAKEVKLE 81 >gi|50290117|ref|XP_447490.1| hypothetical protein [Candida glabrata CBS 138] gi|49526800|emb|CAG60427.1| unnamed protein product [Candida glabrata] Length = 383 Score = 45.4 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEII---AHLLVAEGFADVEELACVKISEIASIEG 400 +E+ ++D + ++ + V+ I L G VE +A ++ I+G Sbjct: 47 QEQYEEGMEEDAALASFVPLEKLQVNGITSTDIKKLRESGLHTVEAVAYAPKKDLLEIKG 106 Query: 401 FDEETAVEIQGRA 413 E A + A Sbjct: 107 ISETKADRLLNEA 119 >gi|242085564|ref|XP_002443207.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor] gi|241943900|gb|EES17045.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor] Length = 342 Score = 45.4 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 TEEE + + + A++V L G VE +A ++ I+G Sbjct: 16 TEEEAPEHGPFPIEQLQASGIAALDV-----KKLKDAGLCTVESVAYSPRKDLLQIKGIS 70 Query: 403 EETAVEIQGRARE 415 E +I A + Sbjct: 71 EAKVDKIIEAASK 83 >gi|296133096|ref|YP_003640343.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola sp. JR] gi|296031674|gb|ADG82442.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens JR] Length = 674 Score = 45.4 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 11/86 (12%) Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETI------SREN 175 E+ Q+ F G++++GTV +V V+VD+ G S+GVI E+ +E Sbjct: 284 MNMEKALQFKAFHP--GDMVTGTVVQVNDDEVMVDVGGKSEGVIPLRESSCCNHNNLKEL 341 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLS 201 GD+VK + + ++ +++LS Sbjct: 342 FTVGDQVKVVVLKAQDDEG--KIILS 365 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 G+++ GTVKR+ VD+G DG++ E E ++ GD+++ +I DV + Sbjct: 471 GQVVKGTVKRLTDFGAFVDIGGIDGLLHVSEMAWYRVGHPSEVVKEGDQIEVFILDVDKN 530 Query: 193 Q 193 Sbjct: 531 T 531 >gi|61371803|gb|AAX43734.1| RAD51-like [synthetic construct] Length = 243 Score = 45.4 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRAREY 416 +I A Y Sbjct: 72 DKILAVAERY 81 >gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 45.1 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V A L+ G+ +E +A E++ G TA + Sbjct: 1 MGEDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKTVD 60 Query: 412 RAREYL 417 ARE L Sbjct: 61 AAREAL 66 >gi|12655203|gb|AAH01459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo sapiens] gi|60655093|gb|AAX32110.1| RAD51-like [synthetic construct] Length = 242 Score = 45.1 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRAREY 416 +I A Y Sbjct: 72 DKILAVAERY 81 >gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 385 Score = 45.1 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLR 177 EA + + E K G++I GTV+R+ VD+G +DG++ E E +R Sbjct: 177 EARARKLFEELKP--GDVIEGTVQRLTDFGAFVDVGGADGLVHISELSFSHVNHPSEVVR 234 Query: 178 PGDRVKSYIYDVRREQRGPQVLLS 201 GDRVK + V E ++ LS Sbjct: 235 EGDRVKVRVLRVDPEAG--RISLS 256 >gi|114051383|ref|NP_001039644.1| DNA repair protein RAD51 homolog 1 [Bos taurus] gi|301754892|ref|XP_002913265.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Ailuropoda melanoleuca] gi|116255982|sp|Q2KJ94|RAD51_BOVIN RecName: Full=DNA repair protein RAD51 homolog 1 gi|86821651|gb|AAI05459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Bos taurus] gi|296483320|gb|DAA25435.1| DNA repair protein RAD51 homolog 1 [Bos taurus] Length = 339 Score = 45.1 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILTEA 78 >gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus str. MIT 9303] gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus marinus str. MIT 9303] Length = 481 Score = 45.1 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRRE 192 +K G++ V G V DL G I R + + EN G + +V E Sbjct: 292 MEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENHEALVGKTLGVAFLEVNPE 351 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 352 TR--KLVLSEKRAATAARFSELEVGQLVEGQV 381 Score = 37.4 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%) Query: 134 FKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSY 185 F + G+++ G V V+ +DLG G++ I+ E GDRVK+ Sbjct: 368 FSELEVGQLVEGQVVAVKPYGFFIDLGGVSGLL-HQSMITGGSLRSLREVFNQGDRVKAL 426 Query: 186 IYDVRREQ 193 I ++ + Sbjct: 427 ITEMDPGR 434 >gi|18312257|ref|NP_558924.1| ATP-dependent, DNA binding helicase [Pyrobaculum aerophilum str. IM2] gi|18159700|gb|AAL63106.1| ATP-dependent, DNA binding helicase [Pyrobaculum aerophilum str. IM2] Length = 704 Score = 45.1 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 E + V + A +L GF + ++A + EIAS+ GF E+ A I +AR Sbjct: 641 EELLELVTALRGVGRVRARILYNFGFRTLRDIARASVREIASLPGFGEKLAESIIEQAR 699 >gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 574 Score = 45.1 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 12/95 (12%) Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIREL 431 +A++L G DVEEL VK +I I G + +I EYL I+ ++++E Sbjct: 34 VANILSELG-TDVEEL--VKTGKIYHIPGIGPSSVEKIL----EYLRTGKISKYEELKEK 86 Query: 432 GVSE--ELCSIPGIDSKIKVALGEN--GIKTMEDL 462 + EL +PGI K L + GI++ +D Sbjct: 87 VPEDLLELLDVPGIGPKTL-KLAYDKLGIRSKDDF 120 >gi|256371862|ref|YP_003109686.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 427 Score = 45.1 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 9/94 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIR------RDETISRENLRPGDRVKSYIYDVR 190 G+I+SG V +V+ V++D+G S+GVI R + + + GDR+ + + + Sbjct: 51 EGDIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRKDVSPADVVSVGDRIDALVL--Q 108 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +E R +++LS+ QF +E + +G+V Sbjct: 109 KEDREGRLVLSKKRAQFEKAWKEIEAIKARDGVV 142 >gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 385 Score = 45.1 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLR 177 EA + + E K G++I GTV+R+ VD+G +DG++ E E +R Sbjct: 177 EARARKLFEELKP--GDVIEGTVQRLTDFGAFVDVGGADGLVHISELSFSHVNHPSEVVR 234 Query: 178 PGDRVKSYIYDVRREQRGPQVLLS 201 GDRVK + V E ++ LS Sbjct: 235 EGDRVKVRVLRVDPEAG--RISLS 256 >gi|178056768|ref|NP_001116653.1| DNA repair protein RAD51 homolog 1 [Sus scrofa] gi|167600352|gb|ABZ89107.1| Rad51 [Sus scrofa] gi|168085455|dbj|BAG09486.1| DNA repair protein RAD51 [Sus scrofa] Length = 339 Score = 45.1 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILTEA 78 >gi|296136322|ref|YP_003643564.1| ribosomal protein S1 [Thiomonas intermedia K12] gi|295796444|gb|ADG31234.1| ribosomal protein S1 [Thiomonas intermedia K12] Length = 567 Score = 45.1 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN-------LRPGDRVKSYIYDV 189 G+I+ GTVK V+ +DLG + +G +R E ISRE L+ GD+V + + ++ Sbjct: 459 KGKIVEGTVKAVDPKGATIDLGSDIEGYLRASE-ISRERVEDARNVLKEGDQVSAVVVNI 517 Query: 190 RREQRGPQVLL 200 R+ R Q+ + Sbjct: 518 DRKTRNIQLSV 528 >gi|114656384|ref|XP_001144234.1| PREDICTED: RAD51 homolog protein isoform 1 [Pan troglodytes] gi|119612839|gb|EAW92433.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform CRA_c [Homo sapiens] Length = 242 Score = 45.1 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRAREY 416 +I A Y Sbjct: 72 DKILVMAERY 81 >gi|189219063|ref|YP_001939704.1| ribosomal protein S1 [Methylacidiphilum infernorum V4] gi|189185921|gb|ACD83106.1| Ribosomal protein S1 [Methylacidiphilum infernorum V4] Length = 449 Score = 45.1 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ I L + D SI IG V + ++ V ++Q QK Sbjct: 31 VVDIGYKSEGIIPLSEFEEPD-SIQIGQEVEVLVESLENEEGMVVLSRQKAAQK---QNW 86 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRD--ETISRENLR--PGDRVK 183 D+ F+ G I+G VK+V G +++++G + + + + +NL+ G + Sbjct: 87 DKILKTFE--EGGTITGKVKQVVKGGLMLNIG-VEAFLPASQIDIVPPKNLKEYEGATLT 143 Query: 184 SYIYDVRREQRGPQVLLSR 202 I + E++ V+LSR Sbjct: 144 CKIVKISEERKN--VVLSR 160 Score = 43.9 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 115 KQVIIQK--VREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 K V++ + + EAER+++ L+F +KV G+++ G VK V +DL DG+I + Sbjct: 154 KNVVLSRREIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGLIHITDM 213 Query: 171 I------SRENLRPGDRVKSYIYDVRREQ 193 E L+ G ++ + DV RE+ Sbjct: 214 SWGRINHPSEILKVGQEIEVVVIDVDREK 242 Score = 37.0 bits (85), Expect = 8.6, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 G I+ G V V+VD+G S+G+I E ++++ G V+ + + E+ Sbjct: 14 EGNIVKGIVVDKTPKEVVVDIGYKSEGIIPLSEFEEPDSIQIGQEVEVLVESLENEEG-- 71 Query: 197 QVLLSR 202 V+LSR Sbjct: 72 MVVLSR 77 >gi|78185204|ref|YP_377639.1| RNA binding S1 [Synechococcus sp. CC9902] gi|78169498|gb|ABB26595.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902] Length = 412 Score = 45.1 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + EN + G + +V Sbjct: 224 EKEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFLEVNSGT 283 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G+V Sbjct: 284 R--KLVLSEKRAATAARFQELEVGQLVEGLV 312 >gi|294340558|emb|CAZ88943.1| 30S ribosomal protein S1 [Thiomonas sp. 3As] Length = 567 Score = 45.1 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN-------LRPGDRVKSYIYDV 189 G+I+ GTVK V+ +DLG + +G +R E ISRE L+ GD+V + + ++ Sbjct: 459 KGKIVEGTVKAVDPKGATIDLGSDIEGYLRASE-ISRERVEDARNVLKEGDQVSAVVVNI 517 Query: 190 RREQRGPQVLL 200 R+ R Q+ + Sbjct: 518 DRKTRNIQLSV 528 >gi|55980131|ref|YP_143428.1| 30S ribosomal protein S1 [Thermus thermophilus HB8] gi|55771544|dbj|BAD69985.1| 30S ribosomal protein S1 [Thermus thermophilus HB8] Length = 536 Score = 45.1 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 12/111 (10%) Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRR 167 A Q+ +Q + E + + + + + G+I++G V V V VD+G ++G+I Sbjct: 4 KATQTPEQTFSMEAALQETEARLEK-RVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPF 62 Query: 168 DET----ISRENLR----PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 ++ +S E LR PGD VK + V E Q+LLSR + K Sbjct: 63 NQLTTKPLSEEELRNLLSPGDEVKVQVLRVDPETG--QILLSRKKIEAQEK 111 >gi|46200126|ref|YP_005793.1| 30S ribosomal protein S1 [Thermus thermophilus HB27] gi|46197754|gb|AAS82166.1| SSU ribosomal protein S1P [Thermus thermophilus HB27] Length = 536 Score = 45.1 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 12/111 (10%) Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRR 167 A Q+ +Q + E + + + + + G+I++G V V V VD+G ++G+I Sbjct: 4 KATQTPEQTFSMEAALQETEARLEK-RVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPF 62 Query: 168 DET----ISRENLR----PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 ++ +S E LR PGD VK + V E Q+LLSR + K Sbjct: 63 NQLTTKPLSEEELRNLLSPGDEVKVQVLRVDPETG--QILLSRKKIEAQEK 111 >gi|30141902|emb|CAD30282.1| 30S ribosomal protein S1 [Thermus thermophilus HB27] Length = 536 Score = 45.1 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 12/111 (10%) Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRR 167 A Q+ +Q + E + + + + + G+I++G V V V VD+G ++G+I Sbjct: 4 KATQTPEQTFSMEAALQETEARLEK-RVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPF 62 Query: 168 DET----ISRENLR----PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 ++ +S E LR PGD VK + V E Q+LLSR + K Sbjct: 63 NQLTTKPLSEEELRNLLSPGDEVKVQVLRVDPETG--QILLSRKKIEAQEK 111 >gi|225374882|ref|ZP_03752103.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM 16841] gi|225213265|gb|EEG95619.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM 16841] Length = 365 Score = 45.1 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 14/145 (9%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAE 126 VV+E + + + ++D S + + R + KQ++++K E + Sbjct: 125 VVDETRVFIPASLVSDSYEKDLSKYKDQEIQFVISEFNPKRRRIIGDRKQLLVEKKLEQQ 184 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGD 180 ++ K KVG+++ GTVK V +DLG +DG++ E ++ GD Sbjct: 185 KELFA---KIKVGDVMEGTVKNVTDFGAFIDLGGADGLLHISEMSWGRVESPKKVFNVGD 241 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHP 205 VK +I D+ ++ LS P Sbjct: 242 TVKVFIKDINDT----KIALSMKFP 262 >gi|161899443|ref|XP_001712948.1| DNA recombination and repair protein [Bigelowiella natans] gi|75756442|gb|ABA27336.1| DNA recombination and repair protein [Bigelowiella natans] Length = 331 Score = 45.1 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +Q + + ++ L+ G + LA E+ SI+G ++ A +I A++ Sbjct: 19 LQKLGISDLDIQKLIDNGIFTINSLAKASKKELYSIKGLNDRKAEKILSLAKK 71 >gi|255284500|ref|ZP_05349055.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella formatexigens DSM 14469] gi|255264957|gb|EET58162.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella formatexigens DSM 14469] Length = 361 Score = 45.1 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 14/141 (9%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAE 126 VV+E + + +++ + + + R + KQ+++ + +E Sbjct: 122 VVDEARVFIPASLVSDTYEKNLEKFADQEIEFVITEFNPRRRRIIGDRKQLLVAR-KEEM 180 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 + + + VG+++ G VK + VDLG +DG++ E R+ GD Sbjct: 181 QKALFE--RIHVGDVVEGVVKNITDFGAFVDLGGADGLLHISEMSWGRVDNPRKLFNVGD 238 Query: 181 RVKSYIYDVRREQRGPQVLLS 201 ++K + D+ G ++ LS Sbjct: 239 KLKVLLKDI----NGNKIALS 255 >gi|320451423|ref|YP_004203519.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01] gi|320151592|gb|ADW22970.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01] Length = 539 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 17/92 (18%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET----ISREN----LRPGDRVKSYIY 187 + G+I++G V V V VD+G ++G+I +E + E L+PGD V+ + Sbjct: 37 RPGQILTGKVVLVGSEGVAVDIGAKTEGIIPFNELTEKSLPEEELKALLKPGDLVRVQVI 96 Query: 188 DVRREQRGPQVLLSRT------HPQFMVKLFH 213 V E QVLLSR H + +L+ Sbjct: 97 KVDPETG--QVLLSRKRVEATEHWDRIRELYE 126 Score = 41.2 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 48/213 (22%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRV-EINPETGDISLFRLLEVVEEVENYTC 77 EKS+ + + ++ K G + ++V +++PETG + L R E + Sbjct: 73 EKSLPEEEL-----KALLK-----PGDLVRVQVIKVDPETGQVLLSRKRVEATEHWDRIR 122 Query: 78 QISLK------VARDRDPSIDIGGVVS----DPLPPMDFGRVAVQSAK--QVIIQKVREA 125 ++ K +++ + + P +D R+ A Q I+ K+ E Sbjct: 123 ELYEKGEPVTVTVKEKVKGGVVADLDGVSAFIPASQLDLKRIPNLDAYVGQQILVKIIEF 182 Query: 126 ERDR---------QYLE---------FKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIR 166 R + E F+ G+++ GTV V V+LG DG++ Sbjct: 183 NRKKGRVLLSRRAVLEEEQKRAKEAFFQSLQPGQVVEGTVVDVTDFGAFVNLGPVDGLVH 242 Query: 167 RDETI------SRENLRPGDRVKSYIYDVRREQ 193 R E +E + G +V++ + V E+ Sbjct: 243 RSEITWGRFNHPKEVIHKGQKVRAQVVSVDPEK 275 >gi|210615657|ref|ZP_03290703.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787] gi|210150200|gb|EEA81209.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787] Length = 361 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + + ++D S G + + + R V ++ ++ + + Sbjct: 125 VVDEARVFIPASLVSDTYEKDLSKYQGQEIEFVISEFNPRRNRVIGDRRQLLVAEKAELQ 184 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDR 181 + + K VG+++ GTVK V +DLG DG++ E ++ + GD Sbjct: 185 KELFAKLK--VGDVVEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFQVGDT 242 Query: 182 VKSYIYDVRREQ 193 VK + D+ + Sbjct: 243 VKVLVKDINDTK 254 >gi|15839029|ref|NP_299717.1| 30S ribosomal protein S1 [Xylella fastidiosa 9a5c] gi|9107629|gb|AAF85237.1|AE004052_12 30S ribosomal protein S1 [Xylella fastidiosa 9a5c] Length = 569 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 29/189 (15%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPE-TGDISLFRLLEVVEEVEN 74 ++ EK+ R +V + ++++K I IN + G ++ ++++ Sbjct: 96 LSREKA-KRSMVWDELEEALEK--------NETISGRINGKVKGGFTV--------DIKD 138 Query: 75 YTCQI--SLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + SL R RDP+ G + L +D R V +++ +++ ER++ Sbjct: 139 VRAFLPASLVDVRPVRDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLL 198 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + + G +++GTVK + VDLG DG++ + E + GD V+ Sbjct: 199 DKL--QEGAVLTGTVKNMTDYGAFVDLGGVDGLLHITDMAWKRVRHPCEVVNIGDEVEVR 256 Query: 186 IYDVRREQR 194 + RE+ Sbjct: 257 VLKFDRERN 265 >gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614] gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614] Length = 490 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I++GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 41 GDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVAVGDEVEALVL--QK 98 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 99 EDKEGRLILSKKRAQYERAWGTIEQVKEEDGVVE 132 >gi|186684029|ref|YP_001867225.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466481|gb|ACC82282.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102] Length = 312 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVR 190 +VG+++SGT++ ++ V VD+G+ ++ + + + D +K+ I + Sbjct: 238 QVGQVVSGTIRGIKDYGVFVDIGDFYALLPTSKMFHPSVDNPNQFFKINDHLKATIVKLD 297 Query: 191 REQRGPQVLL 200 E QV+L Sbjct: 298 PENG--QVVL 305 >gi|242019042|ref|XP_002429975.1| DNA repair protein rad51, putative [Pediculus humanus corporis] gi|212515030|gb|EEB17237.1| DNA repair protein rad51, putative [Pediculus humanus corporis] Length = 339 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%) Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + + + +D+ + ++ + L G+ VE +A +A I+G Sbjct: 6 VTSPAQCVEEESEDYGPSSIKKLEGQGITSGDIKKLEEAGYYTVEAVAFAPKKSLAQIKG 65 Query: 401 FDEETAVEIQGRA 413 E +I A Sbjct: 66 ISEAKVEKIISEA 78 >gi|116075332|ref|ZP_01472592.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916] gi|116067529|gb|EAU73283.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916] Length = 439 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + EN G + +V E Sbjct: 251 EKEGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHESLVGKTLGVAFLEVNSET 310 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 311 R--KLVLSEKRAATAARFSELEVGQLVEGHV 339 Score = 36.6 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 G+++ GTV +E V VD+ G + G + + E T +E G + + Sbjct: 167 GDVVHGTVIGLESDGVYVDIGGKAPGFMPKSECGLGVITNLKERFPKGLEIDVLVTR 223 >gi|152966892|ref|YP_001362676.1| 30S ribosomal protein S1 [Kineococcus radiotolerans SRS30216] gi|151361409|gb|ABS04412.1| RNA binding S1 domain protein [Kineococcus radiotolerans SRS30216] Length = 505 Score = 45.1 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 40 GDIVSGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVGVGDEVEALVL--QK 97 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 98 EDKEGRLILS 107 >gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM 17836] gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836] Length = 492 Score = 45.1 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 44 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVL--QK 101 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 102 EDKEGRLILS 111 >gi|320160398|ref|YP_004173622.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1] gi|319994251|dbj|BAJ63022.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1] Length = 332 Score = 45.1 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVR 190 + GEI++GTV V VDLG +G+I E + L+ G V++ + V Sbjct: 172 RPGEIVNGTVTNVTDFGAFVDLGGLEGLIHVSELSWGRVQHPTDILQVGVPVRALVLSVS 231 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 E + L R P L P+IY Sbjct: 232 AENGRVALSLKRLCPNPWETL-----PQIY 256 >gi|312383584|gb|EFR28621.1| hypothetical protein AND_03252 [Anopheles darlingi] Length = 338 Score = 45.1 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +Q + L GF +E +A ++ +I+G E A +I A Sbjct: 27 LQGNGITSGDIKKLAEAGFHTIESVAFAPKKQLLTIKGISEAKADKILQEA 77 >gi|82799326|gb|ABB92252.1| 30S ribosomal protein S1-like protein B [uncultured marine type-A Synechococcus 5B2] Length = 411 Score = 45.1 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + EN + G + +V E Sbjct: 223 EKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFIEVNSET 282 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +E+ ++ G+V Sbjct: 283 R--KLVLSEKRAAIAARFQELEIGQLVEGLV 311 >gi|291522293|emb|CBK80586.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [Coprococcus catus GD/7] Length = 637 Score = 45.1 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 42/197 (21%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEV----VEEVENYTCQISLKVARDRDPS 90 + + L + R+E + EV V V + + ++ AR P+ Sbjct: 365 VLLTYKRLLAERGNKRIE--------EAYNNKEVLTAKVANVLDGGLSVVVEEARVFIPA 416 Query: 91 IDIGGVVSDPL-------------PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 + L R + KQ+I+ AE+ ++ E +K Sbjct: 417 SLVSDTYEKNLSKYQDQEISFVITEFNPRKRRIIGDRKQLIL-----AEKAQKQKELFEK 471 Query: 138 V--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 + G+ + G VK V +DLG +DG++ E ++ L+ GD +K I D+ Sbjct: 472 INIGDTVEGRVKNVTDFGAFIDLGGADGLLHISEMSWGRVENPKKVLKVGDTLKVLIKDI 531 Query: 190 RREQRGPQVLLSRTHPQ 206 + G ++ LS P+ Sbjct: 532 Q----GEKIALSLKFPE 544 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 15/103 (14%) Query: 112 QSAKQVIIQKVREAERDRQYLEFKD------KVGEIISGTVKRVEYGNVIVDLG-NSDGV 164 + + + + E ++ + + + + GE++ GTV V+ +I+++G +DG+ Sbjct: 268 NNIIEEVHTNMSEMGNEQSFEQMLEASLKTIRTGEVVEGTVIDVKEDEIILNIGYKADGI 327 Query: 165 IRRDETISRENL------RPGDRVKSYIYDVRREQRGPQVLLS 201 I R+E + NL GD +++ + V + QVLL+ Sbjct: 328 ITRNEYSNTSNLDLRTVVNVGDTMQAKVLKVNDGEG--QVLLT 368 >gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] Length = 674 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 6/113 (5%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E A LL F +++ L I E+ IEG E A I + ++ + ++ Sbjct: 524 VGETSAKLLARH-FKNIDALMNAGIEELQEIEGIGEVMAKSIITY---FHTEENLKIIER 579 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 +R G+ EL + I L I A S D+ E GG Sbjct: 580 LRNYGLQMELSEAQ--TANISDKLAGQSIVISGVFAHHSRDEYKAIIEQNGGK 630 >gi|197303562|ref|ZP_03168601.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC 29176] gi|197297560|gb|EDY32121.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC 29176] Length = 362 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 12/146 (8%) Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V+EV + + + ++D S G + + + R V ++ ++ R + Sbjct: 124 TTVDEVRVFIPASLVSDSYEKDLSKYEGQEIEFVISEFNPRRNRVIGDRRQLLVAERAEK 183 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 + + + VG+ + GTVK V VDLG DG++ E ++ GD Sbjct: 184 QKELFAKL--HVGDTVEGTVKNVTDFGAFVDLGGVDGLLHISEMSWGRVDNPKKVFHVGD 241 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQ 206 +K + D+R ++ LS P+ Sbjct: 242 ELKVLVKDIRDT----KIALSLKFPE 263 >gi|299144362|ref|ZP_07037442.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518847|gb|EFI42586.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 680 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 V D + R V S K V +++ EA+R Y + G++I GTV+R+ Sbjct: 428 EFVCDIIDFDKSKRKVVLSRKNVEAEEL-EAKRKSVYESL--QEGDVIEGTVQRLTNFGA 484 Query: 155 IVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 +DLG DG+I E + + PG +V+ + V E+ Sbjct: 485 FIDLGGVDGLIHISELSWNRVKHPADVVAPGQKVEVQVLTVDEEKN 530 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%) Query: 128 DRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + FK + GE++ G V V V+V++G SDG+I R+E + +PG Sbjct: 283 EAIENSFKKIRRGEVVEGEVLFVNENEVMVNIGYRSDGIISREELSNDPEVKPSDLFKPG 342 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D+++ Y+ + V+LS Sbjct: 343 DKIQVYVLKIDDGDGN--VVLS 362 >gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183] Length = 487 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E ++ GD V++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDHVEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|158320593|ref|YP_001513100.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140792|gb|ABW19104.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs] Length = 378 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 9/99 (9%) Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI----- 171 + ++ + + + + GEI+SG V V + V++G SDG+I +DE Sbjct: 1 MSNDMQNLMEEIEKSMVRLRRGEIVSGKVINVTNNEIFVNVGYKSDGIIPKDEISNDITV 60 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209 E ++ GD +K Y+ + VLLS+ Sbjct: 61 QPSELVKEGDEIKVYVLSLDDGDGN--VLLSKKRVDLTK 97 >gi|28199337|ref|NP_779651.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1] gi|71276211|ref|ZP_00652490.1| Ribosomal protein S1 [Xylella fastidiosa Dixon] gi|71898750|ref|ZP_00680919.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1] gi|71900470|ref|ZP_00682601.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1] gi|170730703|ref|YP_001776136.1| 30S ribosomal protein S1 [Xylella fastidiosa M12] gi|182682062|ref|YP_001830222.1| 30S ribosomal protein S1 [Xylella fastidiosa M23] gi|28057443|gb|AAO29300.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1] gi|71162972|gb|EAO12695.1| Ribosomal protein S1 [Xylella fastidiosa Dixon] gi|71729776|gb|EAO31876.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1] gi|71731515|gb|EAO33577.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1] gi|167965496|gb|ACA12506.1| 30S ribosomal protein S1 [Xylella fastidiosa M12] gi|182632172|gb|ACB92948.1| ribosomal protein S1 [Xylella fastidiosa M23] gi|307578330|gb|ADN62299.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 558 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 29/189 (15%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPE-TGDISLFRLLEVVEEVEN 74 ++ EK+ R +V + ++++K I IN + G ++ ++++ Sbjct: 85 LSREKA-KRSMVWDELEEALEK--------NETISGRINGKVKGGFTV--------DIKD 127 Query: 75 YTCQI--SLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + SL R RDP+ G + L +D R V +++ +++ ER++ Sbjct: 128 VRAFLPASLVDVRPVRDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLL 187 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + + G +++GTVK + VDLG DG++ + E + GD V+ Sbjct: 188 DKL--QEGAVLTGTVKNMTDYGAFVDLGGVDGLLHITDMAWKRVRHPCEVVNIGDEVEVR 245 Query: 186 IYDVRREQR 194 + RE+ Sbjct: 246 VLKFDRERN 254 >gi|170584581|ref|XP_001897076.1| DNA repair protein RAD51 homolog 1 [Brugia malayi] gi|158595535|gb|EDP34081.1| DNA repair protein RAD51 homolog 1, putative [Brugia malayi] Length = 363 Score = 44.7 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L GF E +A E+ +I+G E+ A +I A Sbjct: 48 LEQFGISAADIRKLKEAGFCTFEAIAYAPRKELYAIKGISEQKAEKIFAEA 98 >gi|328951770|ref|YP_004369104.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109] gi|328452094|gb|AEB07923.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109] Length = 615 Score = 44.7 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ R+ D IG + + R V ++++I++K R ++ Sbjct: 181 PGSQVDLQPVRNIDSL--IGQTFKFKILKYNKKRRNVVLSRRIIMEKERAEQKSATLAML 238 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + G++++G VK + V VDLG DG++ + E GD ++ I + Sbjct: 239 EG--GKVVNGVVKNITDYGVFVDLGGIDGLLHVTDMSWGRIGHPSEVFHVGDPIEVKILN 296 Query: 189 VRREQ 193 RE Sbjct: 297 FDREN 301 >gi|14595977|gb|AAK68858.1| DNA repair protein [Nosema bombycis] Length = 333 Score = 44.7 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 EEE+ + ++ + + L+ G+ VE LA ++ +I+GF + Sbjct: 7 EEEEFKSETTSLEV-----LKNQGIGPADINKLIEAGYNSVEALAYAPKKQLLTIKGFSD 61 Query: 404 ETAVEIQGRA 413 + A Sbjct: 62 VKVDRLIKEA 71 >gi|15669234|ref|NP_248039.1| transcription elongation factor NusA [Methanocaldococcus jannaschii DSM 2661] gi|2499339|sp|Q58447|NUSA_METJA RecName: Full=NusA protein homolog gi|1591699|gb|AAB99049.1| putative transcription termination-antitermination factor (NusA) [Methanocaldococcus jannaschii DSM 2661] Length = 183 Score = 44.7 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ + +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKTAEEKF-GKKVDIIEYSDDWRKFIRNIFAPIQLDDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQN 327 + + + G +G+N Sbjct: 103 FIKINPKVRRAVFGEKGKN 121 >gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649] gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649] Length = 502 Score = 44.7 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 113 SAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIR 166 +A Q+ I + E D F D G+I+ G + +V+ V++D+G ++GVI Sbjct: 9 TAPQIAINDIGSEEDLLAAIDATIKHFND--GDIVEGIIVKVDRDEVLLDIGYKTEGVIP 66 Query: 167 RDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 E E ++ GD V++ + ++E + +++LS+ Q+ +E + Sbjct: 67 SRELSIKHDIDPNEVVKVGDEVEALVL--QKEDKEGRLILSKKRAQYERAWGTIEKVKEE 124 Query: 221 NGIVQ 225 +G+V Sbjct: 125 DGVVT 129 >gi|289548470|ref|YP_003473458.1| RNA binding S1 domain protein [Thermocrinis albus DSM 14484] gi|289182087|gb|ADC89331.1| RNA binding S1 domain protein [Thermocrinis albus DSM 14484] Length = 523 Score = 44.7 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + G+++ G V +++ N VD+G +G++ R+E E ++ GD +K+ VR + G Sbjct: 18 RRGDVVKGRVVKLDERNAYVDIGFKVEGIVPREELP--ETIKEGDEIKAVF--VRFTKAG 73 Query: 196 PQVL 199 +L Sbjct: 74 SPIL 77 >gi|222481028|ref|YP_002567265.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi ATCC 49239] gi|222453930|gb|ACM58195.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi ATCC 49239] Length = 343 Score = 44.7 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V A LV GF + +A E+++ E +A +I AR+ + Sbjct: 4 DELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSASDIINAARDAAD 62 >gi|311746070|ref|ZP_07719855.1| ribosomal protein S1 [Algoriphagus sp. PR1] gi|126576287|gb|EAZ80565.1| ribosomal protein S1 [Algoriphagus sp. PR1] Length = 590 Score = 44.7 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 E+I GTV V +VI+++G SDG++ +E E+++PGD V+ +I + +E Sbjct: 42 EKEVIKGTVVGVNDKDVIINIGFKSDGLVPLNEFRDLESIKPGDEVEVFIEE--QENALG 99 Query: 197 QVLLSRTHPQFMVK 210 Q++LSR + + Sbjct: 100 QLILSRKKAKIVRA 113 >gi|116749549|ref|YP_846236.1| 30S ribosomal protein S1 [Syntrophobacter fumaroxidans MPOB] gi|116698613|gb|ABK17801.1| SSU ribosomal protein S1P [Syntrophobacter fumaroxidans MPOB] Length = 596 Score = 44.7 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ R + IG + + R V +++ +++K RE + + Sbjct: 161 PGSQVDLRPVR--NLEFLIGQTFPFKVLKYNKKRRNVVLSRRALLEKEREQMKSQTLANL 218 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 +D G+++ G VK + V VDLG DG++ + E + GDR+K + Sbjct: 219 ED--GKVVEGIVKNITDYGVFVDLGGIDGLLHITDMSWGRVGHPSELFQIGDRIKVMVLS 276 Query: 189 VRRE 192 R+ Sbjct: 277 FDRD 280 >gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM 20603] gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603] Length = 488 Score = 44.7 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 33 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGDSVEALVL--QK 90 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 91 EDKEGRLILS 100 >gi|226596530|ref|YP_002791886.1| hypothetical protein HRPV-1_gp1 [Halorubrum pleomorphic virus 1] gi|226427412|gb|ACO54896.1| ORF1 [Halorubrum pleomorphic virus 1] Length = 500 Score = 44.7 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 S + KD + + + E L A G + ++ + EIASI+G E A Sbjct: 396 ASSHDLKDDSRNFDTLQEVPGLGETKLDRLEAHGIQTLSDVRLASVDEIASIDGISESFA 455 Query: 407 VEIQGRARE 415 +++ E Sbjct: 456 EKLKDLVGE 464 >gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] Length = 724 Score = 44.7 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%) Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 S ++ ++ V + A L GF +E LA E+ I G T Sbjct: 635 SKRIEEGVKPELLQLVEIPGVGRVRARRLYNAGFKTLESLATASPQELLRIPGIGPATVA 694 Query: 408 EIQG 411 I Sbjct: 695 SILE 698 >gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486] gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486] Length = 500 Score = 44.7 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1] gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2] gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1] Length = 498 Score = 44.7 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|290961257|ref|YP_003492439.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22] gi|260650783|emb|CBG73900.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22] Length = 498 Score = 44.7 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C] gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C] Length = 504 Score = 44.7 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 40 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 97 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 98 EDKEGRLILS 107 >gi|323345184|ref|ZP_08085408.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269] gi|323094454|gb|EFZ37031.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269] Length = 590 Score = 44.7 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 122 VREAERDRQYLEFKDKVGE--IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 V + + + Y E +KV E ++ GTV ++ VIV++G SDGVI E +L+ Sbjct: 26 VSKEDLQKAYDETLNKVNEHQVVDGTVISIDKKEVIVNIGYKSDGVIPASEFRYNPDLKV 85 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209 GD V+ Y+ +E + Q++LS + Sbjct: 86 GDVVEVYVE--NQEDKKGQLVLSHKKARLSK 114 >gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1] gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1] Length = 403 Score = 44.7 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G++ G V V VD+G +DG++ E E L+PGD+V+ Y+ + Sbjct: 235 KEGDVREGIVTSVCDFGAFVDIGGADGLVHLSEISWSRIKHPGEVLKPGDKVQVYVLSID 294 Query: 191 REQRGPQVLLSRT 203 E++ + L RT Sbjct: 295 NERKRIALSLKRT 307 Score = 36.6 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 9/107 (8%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV-GEIISGTVKRVEYGNVIVDLG- 159 P D Q A Q +++ E ++++ G+ + G + RV ++VD+G Sbjct: 19 SPGDADYANGQGADQRSDRELMEQFLANPAHDYRNLQYGDTVDGIIMRVSRDEILVDIGA 78 Query: 160 NSDGVIRRDE-TISREN----LRPGDRVKSYIYDVRREQRGPQVLLS 201 ++GV+ E E L+PGD + ++ V+ E + + LS Sbjct: 79 KAEGVVPAKEMQSLSEEDRAALKPGDSLLVFV--VQSEDKEGRATLS 123 >gi|332796456|ref|YP_004457956.1| DNA repair and recombination protein RadA [Acidianus hospitalis W1] gi|332694191|gb|AEE93658.1| DNA repair and recombination protein RadA [Acidianus hospitalis W1] Length = 305 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 + + + + L+ G++ +E +A +++ G TA I AR+ L+ T + Sbjct: 1 MGQAVLNKLIDAGYSSLEAIAVASPQDLSVAAGIPLTTAQRIIKEARDALDIRFKTALEV 60 Query: 428 IRE 430 +E Sbjct: 61 KKE 63 >gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1] Length = 498 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2] Length = 498 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139] gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139] gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1] gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2] gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3] gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4] gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1] gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2] gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1] Length = 498 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|294677715|ref|YP_003578330.1| DNA-3-methyladenine glycosylase II [Rhodobacter capsulatus SB 1003] gi|294476535|gb|ADE85923.1| DNA-3-methyladenine glycosylase II [Rhodobacter capsulatus SB 1003] Length = 210 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 9/97 (9%) Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIREL 431 I L+ GF LA ++ G + +Q AR ++ + ++ + Sbjct: 65 IRGRLIDAGFGAAPALAEASEEDLRGC-GLSRQKVRYLQALARSGIDFDALR---RLPDA 120 Query: 432 GVSEELCSIPGIDS-----KIKVALGENGIKTMEDLA 463 V E L +PGI + ALG + ++DLA Sbjct: 121 QVIETLLPLPGIGRWTVEMYLIFALGRADVFAVDDLA 157 >gi|254391555|ref|ZP_05006755.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|294812024|ref|ZP_06770667.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|326440254|ref|ZP_08214988.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|197705242|gb|EDY51054.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|294324623|gb|EFG06266.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] Length = 496 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 38 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 95 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 96 EDKEGRLILS 105 >gi|188589736|ref|YP_001919939.1| 30S ribosomal protein S1 [Clostridium botulinum E3 str. Alaska E43] gi|188500017|gb|ACD53153.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E3 str. Alaska E43] Length = 378 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 41/216 (18%) Query: 31 MADSIQKAA--------RSLYGTMSDIRVEINPE--------TGDISLFRLLEVVEEVEN 74 + S+ KA + + +++V + E G+I +F Sbjct: 84 VELSLIKALVIKEKEQLQKDFKEEKNVKVYVKDEIKGGLISYYGNIRVF----------- 132 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 SL D S + + +DF + ++++ I + E R + Sbjct: 133 --IPASLASRNMIDLSTLKNTELEVRIIELDFRNNKIVASRKAIENEEYEKNRKVIWDSL 190 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K GE +G VK++ VD+G +G+I + E ++ D+V+ YI Sbjct: 191 K--EGEKRTGVVKKLVKYGAFVDIGGVEGLIHISDLSWNRVNRPEEIVKENDKVEVYIGS 248 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 V RE + ++L + + + EI +G++ Sbjct: 249 VDRENQKLSLVL----KDINKEPWTLHTNEIKSGMI 280 >gi|148695988|gb|EDL27935.1| RAD51 homolog (S. cerevisiae), isoform CRA_a [Mus musculus] Length = 265 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L G+ VE +A E+ +I+G Sbjct: 48 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGYHTVEAVAYAPKKELINIKGIS 102 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 103 EAKADKILTEA 113 >gi|94985677|ref|YP_605041.1| 30S ribosomal protein S1 [Deinococcus geothermalis DSM 11300] gi|94555958|gb|ABF45872.1| RNA binding S1 [Deinococcus geothermalis DSM 11300] Length = 587 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 15/88 (17%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---------NLRPGDRVKSYIYD 188 G+I+ GTV + + VD+G +G+I + I E +PGD++++Y+ Sbjct: 72 GDIVDGTVVFIGQEGIAVDVGAKVEGIIPLN-QIGDEPVTLEQAQQMYKPGDQIEAYVVR 130 Query: 189 VRREQRGPQVLLS--RTHPQFMVKLFHM 214 V Q++LS R ++ Sbjct: 131 VDLANN--QIVLSKKRADQDKGWRVLER 156 >gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27] gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27] Length = 473 Score = 44.7 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 11/83 (13%) Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRP 178 E D+ F D G+I+ GTV RV V+VD+G ++GVI E E L Sbjct: 18 EIDKTVKSFSD--GDIVVGTVVRVYRDEVLVDVGYKTEGVIPVKELSLRADVDPNELLEV 75 Query: 179 GDRVKSYIYDVRREQRGPQVLLS 201 G V++ ++ + + +G +++LS Sbjct: 76 GSTVEALVFQ-KEDSQG-RLILS 96 Score = 37.4 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 10/145 (6%) Query: 57 TGD-ISLFRLLEVVEEVENYTCQISLKVARD-RDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 TG I + R +V+ SL R RD S +G + + +D R V + Sbjct: 120 TGKVIEIVRGGLIVDIGLRGFLPASLIDIRRVRDLSSYLGMEIEAKVLELDRQRNNVVLS 179 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI--- 171 ++V++++ + R + G++ GTV + VDLG DG++ E Sbjct: 180 RRVLLEQNQSEARTSLFGNL--HKGQVRKGTVSSIVSFGAFVDLGGIDGLVHISEISWKH 237 Query: 172 ---SRENLRPGDRVKSYIYDVRREQ 193 E L+ G+ V I +V E+ Sbjct: 238 VTQPSEVLKVGEEVTVEILEVDSER 262 >gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1] gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1] Length = 493 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD+V++ + ++ Sbjct: 42 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVEVGDKVEALVL--QK 99 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 100 EDKEGRLILSKKRAQYERAWGTIEQVKEEDGVVE 133 >gi|239940449|ref|ZP_04692386.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998] gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379] gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998] gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998] Length = 504 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1] gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1] Length = 505 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202] gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187] gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165] gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137] gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202] gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187] gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165] gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137] gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1] gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2] gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2] gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1] gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1] gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1] gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2] gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1] gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2] gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1] gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2] gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1] gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1] gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1] gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4] gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1] gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3] gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3] gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1] gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1] gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1] gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2] gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1] gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1] gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1] gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1] gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2] gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1] gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3] gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1] gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2] gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3] gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1] gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1] gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2] gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1] gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2] gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1] gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3] gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2] gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2] gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1] gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3] gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2] gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1] gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1] gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2] gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1] gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266] Length = 498 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712] Length = 503 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 41 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 98 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 99 EDKEGRLILS 108 >gi|327310021|ref|YP_004336918.1| ATP-dependent, DNA binding helicase [Thermoproteus uzoniensis 768-20] gi|326946500|gb|AEA11606.1| ATP-dependent, DNA binding helicase [Thermoproteus uzoniensis 768-20] Length = 716 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 E + + V + A L G+ + ++A K ++IA + GF E A + +AR Sbjct: 645 EELLELVVNLRGVGRVRARTLYQAGYRTLADVARAKPADIARLPGFGERLAASVVEQARA 704 Query: 416 YLEGIDIT 423 L+ I Sbjct: 705 ALDQKGIA 712 >gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC 33331] Length = 503 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] Length = 324 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 22/55 (40%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V A L G+ D+ ELA ++A G E A +I AR+Y Sbjct: 16 LEDLPGVGPTTAEKLREAGYTDLIELAVASPKDLADTVGIGEGVAQKIILAARKY 70 >gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1] gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1] Length = 503 Score = 44.7 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|312113691|ref|YP_004011287.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100] gi|311218820|gb|ADP70188.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100] Length = 576 Score = 44.7 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 85 EVYVERIENAMGEAVLSREKARREDSWTKLEQKFNAGEKVEGVIFNRVKGGFTVDLDGAV 144 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ +D P +++ + MD R + +++ ++++ R +R Sbjct: 145 A---FLPGSQVDIRPIKDVTPLMNVPQP--FQILKMDRRRGNIVVSRRSVLEETRAEQRS 199 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + + G+++ G VK + +DLG DG++ + E L GD V Sbjct: 200 EIVAKLE--EGQVVDGVVKNITDYGAFIDLGGIDGLLHVTDMAWKRVNHPTEILNVGDTV 257 Query: 183 KSYIYDVRREQ 193 K I + E Sbjct: 258 KVQIVRINPET 268 >gi|320102727|ref|YP_004178318.1| 30S ribosomal protein S1P [Isosphaera pallida ATCC 43644] gi|319750009|gb|ADV61769.1| SSU ribosomal protein S1P [Isosphaera pallida ATCC 43644] Length = 594 Score = 44.7 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 12/112 (10%) Query: 92 DIGGVVSDPLPPM----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 DIG + + + D R + +++ +I+ RE ++ E + G+I G VK Sbjct: 161 DIGDYIDQEIECVILKIDEARRNIVVSRRKLIEMTRELQKKTLLAEIEP--GQIRKGVVK 218 Query: 148 RVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + VDLG DG++ + + + D ++ Y+ V +E+ Sbjct: 219 NIADFGAFVDLGGIDGLLHITDMSWGRINNPTDMVAINDEIEVYVIHVDKEK 270 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 17/151 (11%) Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V L M+ + + + +++R +R ++K +++ G V R Sbjct: 79 PPPQIGDTVEFLLEDMNDQTGEIVLSYRK-AERIR--AWERVIAKYK--ENDVVKGKVTR 133 Query: 149 VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK----SYIYDVRREQRGPQVLLSRTH 204 G ++VD+G + + + R GD + I + +R +++SR Sbjct: 134 KIKGGLLVDIG-VNVFLPASQVDIRRPPDIGDYIDQEIECVILKIDEARRN--IVVSRRK 190 Query: 205 -PQFMVKLFHME-VPEIYNGIVQ---VKAVS 230 + +L + EI G ++ VK ++ Sbjct: 191 LIEMTRELQKKTLLAEIEPGQIRKGVVKNIA 221 >gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist] gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist] Length = 473 Score = 44.7 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 11/83 (13%) Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRP 178 E D+ F D G+I+ GTV RV V+VD+G ++GVI E E L Sbjct: 18 EIDKTVKSFSD--GDIVVGTVVRVYRDEVLVDVGYKTEGVIPVKELSLRADVDPNELLEV 75 Query: 179 GDRVKSYIYDVRREQRGPQVLLS 201 G V++ ++ + + +G +++LS Sbjct: 76 GSTVEALVFQ-KEDSQG-RLILS 96 Score = 37.4 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 R RD S +G + + +D R V +++V++++ + R + G++ G Sbjct: 150 RVRDLSSYLGMEIEAKVLELDRQRNNVVLSRRVLLEQNQSEARTSLFGNL--HKGQVRKG 207 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 TV + VDLG DG++ E E L+ G+ V I +V E+ Sbjct: 208 TVSSIVSFGAFVDLGGIDGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSER 262 >gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2] gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1] gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3] gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium sp. P08] Length = 498 Score = 44.7 bits (105), Expect = 0.044, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|251779026|ref|ZP_04821946.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083341|gb|EES49231.1| putative 30S ribosomal protein S1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 378 Score = 44.3 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 41/216 (18%) Query: 31 MADSIQKAA--------RSLYGTMSDIRVEINPE--------TGDISLFRLLEVVEEVEN 74 + S+ KA + + +++V + E G+I +F Sbjct: 84 VELSLIKALVIKEKEQLQKDFKEEKNVKVYVKDEIKGGLISYYGNIRVF----------- 132 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 SL D S + + +DF + ++++ I + E R + Sbjct: 133 --IPASLASRNMIDLSTLKNTELEVRIIELDFRNNKIVASRKAIENEEYEKNRKVIWDSL 190 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K GE +G VK++ VD+G +G+I + E ++ D+V+ YI Sbjct: 191 K--EGEKRTGIVKKLVKYGAFVDIGGVEGLIHISDLSWNRVNRPEEIVKENDKVEVYIGS 248 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 V RE + ++L + + + EI +G++ Sbjct: 249 VDRENQKLSLVL----KDINKEPWTLHTNEIKSGMI 280 >gi|240146046|ref|ZP_04744647.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia intestinalis L1-82] gi|257201862|gb|EEV00147.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia intestinalis L1-82] gi|291539046|emb|CBL12157.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4] Length = 374 Score = 44.3 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 14/145 (9%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAE 126 +V+E + + + ++D S + + R + KQ+++ K E + Sbjct: 125 IVDETRVFIPASLVSDSYEKDLSKYKDQDIEFVISEFNPKRRRIIGDRKQLLVAKKLEQQ 184 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGD 180 ++ K KVG+++ GTVK V +DLG +DG++ E ++ GD Sbjct: 185 KELFA---KIKVGDVMEGTVKNVTDFGAFIDLGGADGLLHISEMSWGRVESPKKVFNVGD 241 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHP 205 V+ +I D+ ++ LS P Sbjct: 242 HVRVFIKDINDT----KIALSMKFP 262 >gi|162457934|ref|NP_001104919.1| DNA repair protein RAD51 homolog B [Zea mays] gi|55976630|sp|Q9XED7|R51A2_MAIZE RecName: Full=DNA repair protein RAD51 homolog B; AltName: Full=Rad51-like protein B; Short=RAD51B; AltName: Full=ZmRAD51b gi|4886754|gb|AAD32030.1|AF079429_1 RAD51 homolog RAD51B [Zea mays] gi|223945143|gb|ACN26655.1| unknown [Zea mays] Length = 340 Score = 44.3 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 EEE + + + + A++V L G VE +A ++ I+G E Sbjct: 15 EEEATEHGPFPIEQLQASGIAALDV-----KKLKDAGLCTVESVAYSPRKDLLQIKGISE 69 Query: 404 ETAVEIQGRARE 415 +I A + Sbjct: 70 AKVDKIIEAASK 81 >gi|282862064|ref|ZP_06271127.1| RNA binding S1 domain protein [Streptomyces sp. ACTE] gi|282563089|gb|EFB68628.1| RNA binding S1 domain protein [Streptomyces sp. ACTE] Length = 504 Score = 44.3 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|114656382|ref|XP_001144544.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Pan troglodytes] gi|332843553|ref|XP_003314670.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Pan troglodytes] Length = 340 Score = 44.3 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRAR 414 E A +I +R Sbjct: 68 EAKADKILTESR 79 >gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680] gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680] Length = 501 Score = 44.3 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|324512204|gb|ADY45060.1| DNA repair protein RAD51 A [Ascaris suum] Length = 346 Score = 44.3 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T EE+ + ++ + + A ++ L GF E +A E+ +I+G Sbjct: 21 TNEEEEMGPYTVIDKLERSGISAADI-----RKLKEAGFNTFEAVAYAPRKELIAIKGIS 75 Query: 403 EETAVEI-QGRAR 414 E+ A +I A+ Sbjct: 76 EQKAEKIYLEAAK 88 >gi|294673916|ref|YP_003574532.1| 30S ribosomal protein S1 [Prevotella ruminicola 23] gi|294472255|gb|ADE81644.1| ribosomal protein S1 [Prevotella ruminicola 23] Length = 592 Score = 44.3 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 5/83 (6%) Query: 122 VREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 V + E D+ Y E +KV +++ GTV ++ V+V++G SDG+I E +L+ Sbjct: 27 VSKEELDKAYDETLNKVADHQVVEGTVISIDKKEVVVNIGYKSDGIIPASEFRYNPDLKI 86 Query: 179 GDRVKSYIYDVRREQRGPQVLLS 201 GD+V+ Y+ +++G Q++LS Sbjct: 87 GDKVEVYVES-AEDKKG-QLILS 107 >gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734] gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734] Length = 488 Score = 44.3 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM 43833] gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833] Length = 480 Score = 44.3 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E ++ GD V++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVKVGDHVEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|281425226|ref|ZP_06256139.1| ribosomal protein S1 [Prevotella oris F0302] gi|281400692|gb|EFB31523.1| ribosomal protein S1 [Prevotella oris F0302] Length = 593 Score = 44.3 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 13/112 (11%) Query: 122 VREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 V + + ++ Y E +K +++ GTV ++ V+V++G SDG+I E +L+ Sbjct: 26 VSKQDLEKAYDETLNKIQEHQVVEGTVISLDKKEVVVNIGYKSDGIIPASEFRYNPDLKV 85 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMV------KLFHMEVPEIYNGIV 224 GD+V+ Y+ +E + Q++LS + + E EI G + Sbjct: 86 GDKVEVYVE--NQEDKKGQLVLSHRKARLNKSWDKVNEALENE--EIIQGYI 133 >gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411] Length = 488 Score = 44.3 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A Synechococcus GOM 3M9] Length = 423 Score = 44.3 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRRE 192 +K G+++ V G V DL G I R + EN + G + +V E Sbjct: 234 MEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFLEVNSE 293 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 294 TR--KLVLSEKRAAVAARFSELEVGQLVEGQV 323 >gi|109080686|ref|XP_001096945.1| PREDICTED: DNA repair protein RAD51 homolog 1-like, partial [Macaca mulatta] Length = 145 Score = 44.3 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILAEA 78 >gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2] gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2] Length = 582 Score = 44.3 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 18/168 (10%) Query: 351 RQKDFNERTQFFMQAINVDEII--------AHLLVAEGFADVEELACVKISEIASIEGFD 402 R + + F + ++ A V E VEELA + I+ Sbjct: 3 RNDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVG 62 Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIPGIDSKIKVALGEN-GIKTM 459 + A +I EY+E I + +RE + L S+ G+ K L E G+ + Sbjct: 63 DAIAAKIV----EYVETGRIEELEDLREDLPVDMAGLTSVEGVGPKTVGKLYEALGVSDL 118 Query: 460 EDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ-VESMIIHAR 506 +DL + D E KG + L + ++ ++ AR Sbjct: 119 DDLEAAARD--GEIQEVKGFGAKTETNILDGIEFAREATGRELLGRAR 164 >gi|256017141|ref|NP_597994.3| DNA repair protein RAD51 homolog 1 isoform 2 [Homo sapiens] gi|256017143|ref|NP_001157741.1| DNA repair protein RAD51 homolog 1 isoform 2 [Homo sapiens] gi|47077076|dbj|BAD18467.1| unnamed protein product [Homo sapiens] gi|119612841|gb|EAW92435.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform CRA_e [Homo sapiens] gi|158257370|dbj|BAF84658.1| unnamed protein product [Homo sapiens] Length = 340 Score = 44.3 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRAR 414 E A +I +R Sbjct: 68 EAKADKILTESR 79 >gi|312090474|ref|XP_003146628.1| rad51 [Loa loa] gi|307758208|gb|EFO17442.1| rad51 [Loa loa] Length = 360 Score = 44.3 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 +I EE+ +N ++ QF + A ++ L GF E + E+ +I+ Sbjct: 30 NIALVEEEDVNSFTVVDKLEQFGISAADI-----RKLKEAGFCTFEAIVYAPRKELYAIK 84 Query: 400 GFDEETAVEIQGRA 413 G E+ A +I A Sbjct: 85 GISEQKAEKIFAEA 98 >gi|119872658|ref|YP_930665.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674066|gb|ABL88322.1| DEAD/DEAH box helicase domain protein [Pyrobaculum islandicum DSM 4184] Length = 706 Score = 44.3 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 12/97 (12%) Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI--------NVDEIIAHLLVAEGFA 382 A++L G II EEE + + + V + A L G+ Sbjct: 613 AAKLAG----IIGEEEHRRRLEVVTARVIYGVREELLELVTTLRGVGRVRARTLYNFGYR 668 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 V ++A I EIAS+ GF E+ A I +AR+ +E Sbjct: 669 TVRDIARASIREIASLPGFGEKLAKSIIEQARQLVET 705 >gi|256394808|ref|YP_003116372.1| 30S ribosomal protein S1 [Catenulispora acidiphila DSM 44928] gi|256361034|gb|ACU74531.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 44.3 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 38 GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDHIEALVL--QK 95 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 96 EDKEGRLILS 105 >gi|159040904|ref|YP_001540156.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga maquilingensis IC-167] gi|226740604|sp|A8MB76|HELS_CALMQ RecName: Full=Putative ski2-type helicase gi|157919739|gb|ABW01166.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis IC-167] Length = 756 Score = 44.3 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +E + + V + A L A G+ +E+LA +S++ I G ++ A I +A Sbjct: 666 DELLELVVNLEGVGRVRARALYAAGYRSIEDLAKANVSDLTRIRGIGDKIAGSIIEQA 723 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 15/161 (9%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 ++ ++ +N +D+ + F A+ + E I + + + V+ ++ + Sbjct: 574 SDVDELVNYPEDYEDFLSEFKTAMALLEWINESNEDQ----IMKTYDVQPGDLRVLSDQA 629 Query: 403 EETAVEIQGRAREYLEGID----ITLQKKIRELGVSEELC----SIPGIDSKIKVALGEN 454 E +Q AR + + + + GV++EL ++ G+ AL Sbjct: 630 EWLIGALQELARTLGLSGNVVNGLRALRYRVKYGVNDELLELVVNLEGVGRVRARALYAA 689 Query: 455 GIKTMEDLAGCSVDDLL---GWSENKGGNIEKFDGFLSSLG 492 G +++EDLA +V DL G + G+I + L G Sbjct: 690 GYRSIEDLAKANVSDLTRIRGIGDKIAGSIIEQAHQLVKDG 730 >gi|300933407|ref|ZP_07148663.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100] Length = 488 Score = 44.3 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|322780402|gb|EFZ09890.1| hypothetical protein SINV_00924 [Solenopsis invicta] Length = 310 Score = 44.3 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L G+ VE +A E+ +I+G E A ++Q A + Sbjct: 8 IKKLQDSGYHTVESVAYATKKELIAIKGISEAKAEKLQQEASK 50 >gi|289193128|ref|YP_003459069.1| NusA family KH domain protein [Methanocaldococcus sp. FS406-22] gi|288939578|gb|ADC70333.1| NusA family KH domain protein [Methanocaldococcus sp. FS406-22] Length = 187 Score = 44.3 bits (104), Expect = 0.054, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ + +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKTAEEKF-GKKVDIIEYSDDWRKFIRNIFAPIQLEDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQN 327 + + + G +G+N Sbjct: 103 FIKINPKVRRAVFGEKGKN 121 >gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1] Length = 573 Score = 44.3 bits (104), Expect = 0.054, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 16/130 (12%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +IS +R + + +G V + ++ K ++ K+ E + +F Sbjct: 213 PKSEISWDKSRKVEEVLKVGDEVEVVVKE-------IKDKKPILSLKLLEGNP---WDKF 262 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE------NLRPGDRVKSYIYD 188 +G+++ +K + G ++VDLG +G I E + NL+ GD V + I++ Sbjct: 263 DKNIGDVVEVKIKDINKGGLVVDLGLLEGFIPNSEISHFDYVKAKKNLKVGDTVVAKIFE 322 Query: 189 VRREQRGPQV 198 + +E+ ++ Sbjct: 323 IDKEKGKVKL 332 Score = 36.6 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 11/80 (13%) Query: 131 YLEF--KDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDR 181 + +F K KVG+++ G VK+ +E G + +G I E I + L Sbjct: 426 FNDFVSKHKVGDVVKGKVKKLIEKGAFVDITDEIEGFIPVSEISKERIKIPSDKLSLHQE 485 Query: 182 VKSYIYDVRREQRGPQVLLS 201 V++ I + + + ++ LS Sbjct: 486 VEAKIIKIDTQNK--KITLS 503 >gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291] gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291] Length = 489 Score = 44.3 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I++GTV +V++ V++D+G ++GVI E E + GD V + + + Sbjct: 34 GDIVTGTVVKVDHDEVLLDIGYKTEGVIPTRELSIKHDIDPDEVVEVGDEVDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Moorella thermoacetica ATCC 39073] gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella thermoacetica ATCC 39073] Length = 736 Score = 44.3 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 14/104 (13%) Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 + G +++GTV ++ V+VD+ G S+GVI +E E + GD + + Sbjct: 363 RRGNVVAGTVVQITDNEVMVDVGGKSEGVIPLNELSHRNVTDPHEVVAVGDTINVMVLRP 422 Query: 190 RREQRGPQVLLS--RTHPQFMVKLFHMEV---PEIYNGIVQVKA 228 E+ P +LS R + + + EI +++V Sbjct: 423 ENEEGHP--VLSKRRADRRVAWEKLEEHLASGEEIQGEVIEVVK 464 >gi|257386579|ref|YP_003176352.1| transcription elongation factor NusA-like protein [Halomicrobium mukohataei DSM 12286] gi|257168886|gb|ACV46645.1| NusA family KH domain protein [Halomicrobium mukohataei DSM 12286] Length = 141 Score = 44.3 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G G V + ++L + ++ + +A FV N L PA V V + E+ V V Sbjct: 49 IGPGGVVVDRIESKLDR-AVKLIEDADTAANFVANTLAPAAVYNVTISENDDTIAYVEVA 107 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +E +AIG G+N+ A +L D+ Sbjct: 108 QEDRGVAIGADGKNIDAARRLAKRHFDV 135 >gi|297696334|ref|XP_002825351.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 2 [Pongo abelii] gi|297696336|ref|XP_002825352.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 3 [Pongo abelii] Length = 340 Score = 44.3 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L GF VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGFHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQG 411 E A +I Sbjct: 68 EAKADKILT 76 >gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM 43247] gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247] Length = 487 Score = 43.9 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|331091238|ref|ZP_08340079.1| hypothetical protein HMPREF9477_00722 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404685|gb|EGG84224.1| hypothetical protein HMPREF9477_00722 [Lachnospiraceae bacterium 2_1_46FAA] Length = 363 Score = 43.9 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 12/134 (8%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + + ++D S G + + + R V ++ ++ AE+ Sbjct: 125 VVDEARVFIPASLVSDTYEKDLSKYQGQEIEFVISEFNPRRNRVIGDRR----QLLVAEK 180 Query: 128 DRQYLE-FKD-KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPG 179 + E F + KVG+++ GTVK V +DLG DG++ E ++ + G Sbjct: 181 AKLQEELFANLKVGDVVEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFQVG 240 Query: 180 DRVKSYIYDVRREQ 193 + +K + D+ + Sbjct: 241 ETIKVLVKDINDTK 254 >gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78] gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG] gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF] gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78] Length = 504 Score = 43.9 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|332878224|ref|ZP_08445952.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683836|gb|EGJ56705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 586 Score = 43.9 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-N 160 +F Q + + + + F D + E++ G V R+ I+D+ Sbjct: 12 LENFDWNKYQEGIDSVQEDQLKNFEELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAK 71 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 S+GVI +E NL+ GD+V+ I D+R ++ G Q++LS Sbjct: 72 SEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNG-QLVLS 110 >gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74] gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74] Length = 504 Score = 43.9 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|197092361|gb|ACH42253.1| RAD51A recombination protein [Triticum aestivum] Length = 316 Score = 43.9 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 32 LQASGIAAVDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIEAASK 84 >gi|160934311|ref|ZP_02081698.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753] gi|156866984|gb|EDO60356.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753] Length = 686 Score = 43.9 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 12/117 (10%) Query: 94 GGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA---ERDRQYLEFKD--KVGEIISGTVK 147 G + D L F + V ++ + +R ER + +F + ++G++ +GTVK Sbjct: 436 GDSLEDLLKQEVKFRIIEVNRGRRRAVGSIRSVLKDERKKLAEKFWETAEIGKVYTGTVK 495 Query: 148 RVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 + VDLG DG++ E E + GD V+ YI D+ E+ + Sbjct: 496 SLTSYGAFVDLGGIDGMVHISELSWSRIKHPSEIVNVGDTVEVYIKDLDPEKGKISL 552 >gi|288799972|ref|ZP_06405431.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039] gi|288333220|gb|EFC71699.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039] Length = 591 Score = 43.9 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 131 YLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E +K +++ GTV V+ VIV++G SDG+I E +L+ GD+V+ Y+ Sbjct: 35 YDETLNKIAEHQVVEGTVTHVDKKEVIVNIGYKSDGIIPASEFRYNPDLKVGDKVEVYV- 93 Query: 188 DVRREQRGPQVLLS 201 +++ +++G Q+ LS Sbjct: 94 EMQEDKKG-QLELS 106 >gi|90655490|gb|ABD96330.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A Synechococcus GOM 3O6] Length = 408 Score = 43.9 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + +N + G + +V E Sbjct: 220 EKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQEGDNHQELVGKTLGVAFIEVNSET 279 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS+ + +EV ++ G+V Sbjct: 280 R--KLVLSQKRAAVAARFQELEVGQLVEGVV 308 >gi|229816274|ref|ZP_04446583.1| hypothetical protein COLINT_03326 [Collinsella intestinalis DSM 13280] gi|229808125|gb|EEP43918.1| hypothetical protein COLINT_03326 [Collinsella intestinalis DSM 13280] Length = 2133 Score = 43.9 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 12/96 (12%) Query: 368 VDEIIAHLLVAEGFA--DVEELACV--KISEIASIEGFDEETAVEIQGR---AREYLEGI 420 V +I A LVAE + E A E+ G D++ E+ R AR+ L Sbjct: 1915 VADIDAEKLVAEDYTQTTWEPFANALHDAKELLKNPGDDQKVVDELTERLGNARKALVKS 1974 Query: 421 DITLQKK-----IRELGVSEELCSIPGIDSKIKVAL 451 D+ Q+K + L + G + L Sbjct: 1975 DVAPQEKPDKSALEALVAEARMLDTEGKTPALVERL 2010 >gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A] Length = 484 Score = 43.9 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|206890956|ref|YP_002249561.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742894|gb|ACI21951.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 534 Score = 43.9 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+GEI + V + + VD+ G +G++ E ++ GD +K + V +E+R Sbjct: 462 KIGEIYNAKVIKKTEHGLFVDIEGIVEGLVYNSEIDKNRTVKEGDEIKVIVVKVDKEKR- 520 Query: 196 PQVLLS 201 ++ LS Sbjct: 521 -KIGLS 525 >gi|157822405|ref|NP_001102674.1| DNA repair protein RAD51 homolog 1 [Rattus norvegicus] gi|149022997|gb|EDL79891.1| similar to DNA repair protein RAD51 homolog 1 (predicted) [Rattus norvegicus] gi|197246432|gb|AAI68875.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Rattus norvegicus] Length = 339 Score = 43.9 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L G+ VE +A E+ +I+G Sbjct: 13 TSVEEESFGPQPISRLEQCGINANDV-----KKLEEAGYHTVEAVAYAPKKELINIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|167630001|ref|YP_001680500.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium modesticaldum Ice1] gi|167592741|gb|ABZ84489.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium modesticaldum Ice1] Length = 665 Score = 43.9 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE---TISR---ENLRPGDRVKSYIYDVR 190 G++I+G V +V + V+VD+ G S+GVI E + + ++ GD VK I Sbjct: 318 EGQLITGIVVKVTHDEVLVDVAGKSEGVIPIRELATRMPNSASDIVKVGDEVKVVILKAE 377 Query: 191 REQRGPQVLLSRTHPQFMVKLFH-MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 E ++LSR K+ H E E + I G R + V Sbjct: 378 SEDG--TLVLSRRRAIEREKILHLQEAKERGDIITGEVIAVVKGGLRVDVGVIGFVP 432 Score = 43.5 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + + +D R +++V++++ + R + + E + G+ GTV+R+ Sbjct: 448 IGQTLRMRIMEIDTRRNNAVLSQKVVLEEEYKEARAKTWEEIE--EGQTRRGTVRRLTDF 505 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ E E ++ GD + Y+ V RE+ Sbjct: 506 GAFVDLGGVDGLLHVSEMSWGRIKHPSEVVKEGDVIDVYVLKVDREK 552 >gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 480 Score = 43.9 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 16/99 (16%) Query: 115 KQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRD 168 KQV + + AE ++ F D G++I GTV +++ V++D+G ++GVI Sbjct: 11 KQVAVNDIGSAEDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSR 68 Query: 169 ETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E E + GD V++ + ++E + +++LS Sbjct: 69 ELSIKHDIDPSEVVDVGDTVEALVL--QKEDKEGRLILS 105 >gi|332799296|ref|YP_004460795.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Tepidanaerobacter sp. Re1] gi|332697031|gb|AEE91488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Tepidanaerobacter sp. Re1] Length = 668 Score = 43.9 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 123 REAERDRQYLE-FKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISR 173 +E E + Y F D K I+ GTV +V+ V+V++G SDG+I +E Sbjct: 287 KEEEGELNYENTFTDLKEDTIVEGTVVKVDNNEVLVNIGYKSDGIIPINELSDIAFESPE 346 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 + ++ GD+++ YI + E V+LS+ + Sbjct: 347 DIIKVGDKIQVYIMKLEDEDGN--VVLSKKKADII 379 >gi|319440326|ref|ZP_07989482.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702] Length = 486 Score = 43.9 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD V + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEIGDEVDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKDGRLILS 101 >gi|312131252|ref|YP_003998592.1| ssu ribosomal protein s1p [Leadbetterella byssophila DSM 17132] gi|311907798|gb|ADQ18239.1| SSU ribosomal protein S1P [Leadbetterella byssophila DSM 17132] Length = 604 Score = 43.9 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D + +G + + ++ V + +V+I+K E++R + Sbjct: 149 EAFLPGSQIDVKPIRDFD--VFVGKRMEVKVVKINHTNDNVVVSHKVLIEKDLESQRQQI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+++ G VK + V +DLG DG++ + E L D++K Sbjct: 207 LTNLE--KGQVLEGVVKNITNFGVFIDLGGVDGLLHITDISWGRVNHPNEVLNLDDKIKV 264 Query: 185 YIYDVRREQRGPQV 198 + D E++ + Sbjct: 265 VVLDFDDEKKRISL 278 >gi|307594663|ref|YP_003900980.1| DEAD/DEAH box helicase domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549864|gb|ADN49929.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta distributa DSM 14429] Length = 763 Score = 43.9 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 +E + + V A L GF VE++A I+ I GF ++ A I +AR Sbjct: 668 DELIELVVNLEGVGRARARALYNAGFKSVEDIANADPRVISMIRGFGDKLARSIIEQAR 726 >gi|242309366|ref|ZP_04808521.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489] gi|239523937|gb|EEQ63803.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489] Length = 551 Score = 43.9 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 13/102 (12%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE 174 K + +K+RE ++KDK I+ G V + G IV+ + + + +E Sbjct: 92 KAIRREKIREYI-KSLGEDYKDK---IVEGVVVKKNKGGYIVESDAVEFFMPKFAAAFKE 147 Query: 175 -NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 N G R+K+ I +V+ E+ +++SR +LF +E Sbjct: 148 GNKNEGKRIKACIINVKPEED--SIVISR------KRLFEIE 181 Score = 37.4 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 29/191 (15%) Query: 32 ADSIQKAARSLYGTMSDIRVE-IN---PETGD-------ISLFRLLEVVEEVEN--YTCQ 78 DSI + + L+ ++I+ + I+ + G+ I+ F + VE VE + + Sbjct: 167 EDSIVISRKRLFEIENNIKKDVIDNLLKQEGNLKGRIKKITSFGMFVDVEGVEGLVHYTE 226 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 IS K + G +VS + D R S K I +E E + + Sbjct: 227 ISHKGPVNPSKLYKEGDIVSLKVLSYDKEKRRLALSIKDTIEDPWKEVENELE------- 279 Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDE-------TISRENLRPGDRVKSYIYDV 189 VG+ I V +E V VDLGN +G + E E L+ G + + ++ Sbjct: 280 VGDAIKVVVSNIEPYGVFVDLGNDIEGFLHISEISWNKNIQNPEEFLKTGQEIDVEVIEI 339 Query: 190 RREQRGPQVLL 200 ++R +V L Sbjct: 340 DTKERRLRVSL 350 >gi|170754879|ref|YP_001781355.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum B1 str. Okra] gi|169120091|gb|ACA43927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum B1 str. Okra] Length = 638 Score = 43.9 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 16/113 (14%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 ++ + + M+ ++ +K ++ + E E+ VG+++ GT+ + + Sbjct: 267 IIKEAINKMNNNDSIIEVSKNEMLNYMNEKEQQIV-------VGKVVKGTIVSLNENELF 319 Query: 156 VDLG-NSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDL S+G+I ++E +I +E+ + GD +++ I ++ E V+LS Sbjct: 320 VDLNYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKNEDG--YVVLS 370 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V I L D + + V+ D R + +++ I++ VR + + Sbjct: 414 VFIPASHIELSHVDDLEAYKGLELEVNIIEFIKDRYRTKIVGSRRNILKTVRNKHIEETW 473 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + ++ G VKR +++ DG++ E + L+ G+++K Y Sbjct: 474 NSLE--KDTVVEGEVKRFTDFGAFIEINGVDGLLHVSEISWGRVEKPEDALKIGNKIKVY 531 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFH 213 I D+ +E + ++ LS + KL Sbjct: 532 ILDIDKENK--KLALS------IKKLIE 551 >gi|108763761|ref|YP_631975.1| 30S ribosomal protein S1 [Myxococcus xanthus DK 1622] gi|108467641|gb|ABF92826.1| ribosomal protein S1 [Myxococcus xanthus DK 1622] Length = 570 Score = 43.9 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ R+ D I + + R + +++V+++K RE + Sbjct: 148 PGSQVDIRPVRNLDQYISK--EFEFKVIKFNKKRGNIVLSRRVLLEKQREEMKKETLKNL 205 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G ++ G VK + +DLG DG++ + E GD V+ + Sbjct: 206 K--EGAVLKGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRIGHPSEMFNVGDEVRVVVLK 263 Query: 189 VRREQ 193 Q Sbjct: 264 FDPTQ 268 >gi|313141474|ref|ZP_07803667.1| 30s ribosomal protein s1 [Helicobacter canadensis MIT 98-5491] gi|313130505|gb|EFR48122.1| 30s ribosomal protein s1 [Helicobacter canadensis MIT 98-5491] Length = 453 Score = 43.9 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 21/106 (19%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR-----DE 169 K + +K+RE ++KDK ++ G V + G IV+ + + + E Sbjct: 101 KAIRREKIREYI-KNLGEDYKDK---VVEGVVIKKNKGGYIVEGEGIEFFMPKFAAAFKE 156 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 E G R+K+ I +V+ E+ V++SR +LF +E Sbjct: 157 GSKNE----GRRIKACIINVKPEED--SVVISR------KRLFEIE 190 Score = 37.0 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 18/143 (12%) Query: 69 VEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV-AVQSAKQVIIQKVREA 125 VE VE + +IS K + G VS + D + S K I +E Sbjct: 224 VEGVEGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKRLALSIKDTIEDPWKEV 283 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDE-------TISRENLR 177 E + + VG+ I V +E V VDLGN +G + E E L+ Sbjct: 284 ENELE-------VGDAIKVIVSNIEPYGVFVDLGNDIEGFLHISEISWNKNIQNPEEFLK 336 Query: 178 PGDRVKSYIYDVRREQRGPQVLL 200 G + + ++ ++R +V L Sbjct: 337 TGQEIDVEVIEIDTKERRLRVSL 359 >gi|330469194|ref|YP_004406937.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032] gi|328812165|gb|AEB46337.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032] Length = 495 Score = 43.9 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|291401472|ref|XP_002717082.1| PREDICTED: DNA helicase HEL308 [Oryctolagus cuniculus] Length = 1054 Score = 43.9 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A +I A+ L+ Sbjct: 966 LMEVTGVQEGRAKQLYNAGYKSLTHLANADPEVLIRTIDHLSRRQAKQIVSSAKMLLQEK 1025 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1026 AEALQEEVEEL 1036 >gi|32265636|ref|NP_859668.1| 30S ribosomal protein S1 [Helicobacter hepaticus ATCC 51449] gi|32261684|gb|AAP76734.1| ribosomal protein S1 [Helicobacter hepaticus ATCC 51449] Length = 552 Score = 43.9 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 7/113 (6%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 +I + + P GR K + +++ E + + ++DK II V + Sbjct: 73 FNINDKIEVFVTPGRGGRPNASYKKALKSKRIVE-KIAQIADNYQDK---IIEAKVIKKN 128 Query: 151 YGNVIVDLGNSDGVIRRDETISRENLR-PGDRVKSYIYDVRREQRGPQVLLSR 202 G I++ D + R ++ RE+ + G K I ++ +E +++SR Sbjct: 129 KGGFILEYDGIDVFMPRRDSAIREDDKAIGKIYKVAIVNINKESN--SIIVSR 179 >gi|189502053|ref|YP_001957770.1| 30S ribosomal protein S1 [Candidatus Amoebophilus asiaticus 5a2] gi|189497494|gb|ACE06041.1| hypothetical protein Aasi_0644 [Candidatus Amoebophilus asiaticus 5a2] Length = 611 Score = 43.9 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 E+ GTV + +VIV++G SDG+I E +++ GD V Y+ + + +G Sbjct: 42 ESEVAKGTVVGINNRDVIVNIGIKSDGLIPLSEFRDTPDIKVGDEVDVYVEE-QENSKG- 99 Query: 197 QVLLSRTHPQFMV 209 Q++LSR + M Sbjct: 100 QLVLSRKKAKLMK 112 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 12/135 (8%) Query: 71 EVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E QI +K RD D +D + VV + + + A +I++ E ++ Sbjct: 147 EAFLPGSQIDVKPVRDFDIFLDKVIDVVVIKINHLTDNVIVSHKA---VIERSLENQKTN 203 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVK 183 + + G+I+ G VK + V V LG DG++ + E L G ++K Sbjct: 204 ILSKLE--KGQILEGIVKNMTSFGVFVGLGGIDGLLHITDIAWRRITHPEEVLELGQKIK 261 Query: 184 SYIYDVRREQRGPQV 198 + D E++ + Sbjct: 262 VVVTDFDEERKRISL 276 >gi|225572241|ref|ZP_03781105.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM 10507] gi|225040303|gb|EEG50549.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM 10507] Length = 368 Score = 43.9 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 18/148 (12%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAE 126 VV+E + + ++D S + + + R + + KQ+++ AE Sbjct: 125 VVDEARVFIPASLVSDTYEKDLSKYADQEIEFLITEFNPKRRRIIGNRKQLLL-----AE 179 Query: 127 RDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRP 178 + + E + VG+ + G VK V +DLG +DG++ E ++ + Sbjct: 180 KAEKQKELMARISVGDTVEGVVKNVTDFGAFIDLGGADGLLHISEMSWGRVENPKKVFKV 239 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 GD VK I D+ G ++ LS P+ Sbjct: 240 GDTVKVLIKDI----NGDKIALSLKFPE 263 >gi|302868826|ref|YP_003837463.1| RNA binding S1 domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504704|ref|YP_004083591.1| RNA binding s1 domain protein [Micromonospora sp. L5] gi|302571685|gb|ADL47887.1| RNA binding S1 domain protein [Micromonospora aurantiaca ATCC 27029] gi|315411323|gb|ADU09440.1| RNA binding S1 domain protein [Micromonospora sp. L5] Length = 494 Score = 43.9 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|224417933|ref|ZP_03655939.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491] Length = 451 Score = 43.9 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 21/106 (19%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR-----DE 169 K + +K+RE ++KDK ++ G V + G IV+ + + + E Sbjct: 99 KAIRREKIREYI-KNLGEDYKDK---VVEGVVIKKNKGGYIVEGEGIEFFMPKFAAAFKE 154 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 E G R+K+ I +V+ E+ V++SR +LF +E Sbjct: 155 GSKNE----GRRIKACIINVKPEED--SVVISR------KRLFEIE 188 Score = 36.6 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 18/143 (12%) Query: 69 VEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV-AVQSAKQVIIQKVREA 125 VE VE + +IS K + G VS + D + S K I +E Sbjct: 222 VEGVEGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKRLALSIKDTIEDPWKEV 281 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDE-------TISRENLR 177 E + + VG+ I V +E V VDLGN +G + E E L+ Sbjct: 282 ENELE-------VGDAIKVIVSNIEPYGVFVDLGNDIEGFLHISEISWNKNIQNPEEFLK 334 Query: 178 PGDRVKSYIYDVRREQRGPQVLL 200 G + + ++ ++R +V L Sbjct: 335 TGQEIDVEVIEIDTKERRLRVSL 357 >gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU121] Length = 699 Score = 43.9 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + V T I + RD Sbjct: 521 EVIEEALEQARQGRLAIMDHMLQTIDQPRNELSAYAPKVV-------TMNIKPEKIRDVI 573 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G++ + + Q +I + RE + +VG++ + Sbjct: 574 GPGGKKINEIIDETGVKLDIEQDGQIFIGAVDQEMIDRAREIIEEITRE---AEVGQVYN 630 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 VKR+E V+L + IS E L+ GD ++ + ++ ++ R Sbjct: 631 AKVKRIEKYGAFVELFPGKDALLHISQISTERINKVEDVLKLGDSIEVKVTEIDKQGR 688 >gi|238060171|ref|ZP_04604880.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149] gi|237881982|gb|EEP70810.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149] Length = 497 Score = 43.9 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|303241879|ref|ZP_07328373.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio cellulolyticus CD2] gi|302590553|gb|EFL60307.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio cellulolyticus CD2] Length = 685 Score = 43.9 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 54/195 (27%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET-------ISRENLRPGDRVKSYIYD 188 + G++++G V + VDLG SDG+I +E I E ++ GD+++ Y+ Sbjct: 307 RDGDVVTGKVIGFNSNEIFVDLGYKSDGIIPIEEYTDEPDFKIESE-IKVGDKIEVYVKR 365 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + VLLS+ H + E+ + Y ++A+ + Sbjct: 366 VNDGEGN--VLLSKKHLDSLKSW--DEIIKAYEDKTPIRAIV-----------------V 404 Query: 249 DPV--GACVGMRGSRV--------QAVVTELRDE------KIDIVVWSPDSATFVINALR 292 D V G +G R+ V EL E + I+ ++ V +A Sbjct: 405 DVVNGGVIASAKGVRIFVPASQISDKFVKELN-EFLKKPINVRIIEYNDKKRKLVGSA-- 461 Query: 293 PAIVTKVVLDEDVGR 307 +V+L+E+ + Sbjct: 462 -----RVLLEEEKAK 471 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QIS K ++ + + V + D R V SA+ + E E+ ++ F Sbjct: 423 PASQISDKFVKELNEFLKKPINVRI-IEYNDKKRKLVGSAR-----VLLEEEKAKKSKAF 476 Query: 135 KDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYI 186 D+V G+I SG VK + V VD+G DG+I E E ++ GD+V+ I Sbjct: 477 WDEVEVGKIYSGVVKSLTDFGVFVDIGGVDGLIHISELSWSRIKHPSEVVKVGDKVQVSI 536 Query: 187 YDVRREQRGPQV 198 + ++E+ + Sbjct: 537 LEFKKEKGKISL 548 >gi|330813567|ref|YP_004357806.1| SSU ribosomal protein S1p [Candidatus Pelagibacter sp. IMCC9063] gi|327486662|gb|AEA81067.1| SSU ribosomal protein S1p [Candidatus Pelagibacter sp. IMCC9063] Length = 565 Score = 43.9 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 L + PS I + + +D R+ V S+++ I+++V+ +D+ ++K + + Sbjct: 146 LSDRPIKSPSEFINKPLEFYIIKIDNVRMNVISSRRAILEEVKNQNKDQVISKYK--LND 203 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQR 194 I+ G VK + + V + N D ++ E E GD VK I D+ E + Sbjct: 204 IVEGNVKAITSYGLFVSIENLDCLLHSSEVSHLKISNLNEMFSVGDTVKVQIIDIDLETK 263 Query: 195 GPQVLLS 201 ++ LS Sbjct: 264 --RISLS 268 >gi|317505519|ref|ZP_07963437.1| 30S ribosomal protein S1 [Prevotella salivae DSM 15606] gi|315663432|gb|EFV03181.1| 30S ribosomal protein S1 [Prevotella salivae DSM 15606] Length = 593 Score = 43.9 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%) Query: 122 VREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 V + + ++ Y E +K +++ GTV ++ V+V++G SDG+I E +L+ Sbjct: 26 VSKQDLEKAYDETLNKIQEHQVVEGTVIALDKKEVVVNIGYKSDGIIPASEFRYNPDLKV 85 Query: 179 GDRVKSYIYDVRREQRGPQVLLS 201 GD+V+ Y+ +E + Q++LS Sbjct: 86 GDKVEVYVE--NQEDKKGQLVLS 106 >gi|225444585|ref|XP_002273803.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297738498|emb|CBI27743.3| unnamed protein product [Vitis vinifera] Length = 337 Score = 43.9 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 344 EEEDSINRQKDFNERTQ-----FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 E++ ++ + +QA + + L G VE +A ++ I Sbjct: 2 EQQKMAQAHEEVEDMQHGPFPVEHLQASGIASLDIKKLKDAGLCTVESVAYSPRKDLLQI 61 Query: 399 EGFDEETAVEIQGRARE 415 +G E +I A + Sbjct: 62 KGISEAKVDKIVEAASK 78 >gi|289581819|ref|YP_003480285.1| NusA family KH domain protein [Natrialba magadii ATCC 43099] gi|289531372|gb|ADD05723.1| NusA family KH domain protein [Natrialba magadii ATCC 43099] Length = 166 Score = 43.5 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 10/95 (10%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDI----VVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 G +G G ++ ++D+ V + D TFV N L PA V V + E+ Sbjct: 71 GEAIGPEGRTIKRFED-----RVDLPVRLVENAADPETFVANTLAPAAVYNVTISENNDT 125 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +AIG G+ + A L +I Sbjct: 126 VAYVEVADADRGIAIGSNGRTIEAARTLAQRHFEI 160 >gi|124485461|ref|YP_001030077.1| DNA repair and recombination protein RadA [Methanocorpusculum labreanum Z] gi|226736607|sp|A2SR54|RADA_METLZ RecName: Full=DNA repair and recombination protein radA gi|124363002|gb|ABN06810.1| DNA repair and recombination protein RadA [Methanocorpusculum labreanum Z] Length = 329 Score = 43.5 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Query: 363 MQAINVDEI------IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 M A++++EI A L G+ VE +A ++A E T +I ARE Sbjct: 1 MTALDIEEIPGVGPATADRLRDAGYITVESIATATPVDLAEAAELGESTTKKIIKAARE 59 >gi|296214172|ref|XP_002807247.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 1-like [Callithrix jacchus] Length = 339 Score = 43.5 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPVSRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQ 410 +I Sbjct: 72 DKIL 75 >gi|167769904|ref|ZP_02441957.1| hypothetical protein ANACOL_01245 [Anaerotruncus colihominis DSM 17241] gi|167667895|gb|EDS12025.1| hypothetical protein ANACOL_01245 [Anaerotruncus colihominis DSM 17241] Length = 310 Score = 43.5 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 14/101 (13%) Query: 117 VIIQKVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI--- 171 VI Q R A + + K+ G++I V +E VD+G + + I Sbjct: 102 VIPQLSRRAVQQECQDTYISKLVPGDVIDAKVTHLESFGCFVDIGCGLPSLIPIDAISVS 161 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 R+ P +K+ + V + R +S TH + + Sbjct: 162 RIAHPRDRFTPAQDIKAVVKAVEPDGR-----VSLTHKELL 197 >gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485] Length = 397 Score = 43.5 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 + R I + + +D R + +++ Q+ R+A++ R E + G Sbjct: 157 TAADERQYALQKMINQEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQP--G 214 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +++ G V ++ +DLG +DG+ E RE L+PG VK + ++ RE+ Sbjct: 215 DVLVGKVNQLTNFGAFIDLGGADGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRER 274 >gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae] Length = 482 Score = 43.5 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707] gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707] Length = 528 Score = 43.5 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 74 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 131 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 132 EDKEGRLILS 141 >gi|134299017|ref|YP_001112513.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051717|gb|ABO49688.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum reducens MI-1] Length = 672 Score = 43.5 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 + + M+ R V +++ ++++ +R+ + G+I+ G V+R+ Sbjct: 427 LNQEFEVRVIEMNKQRKKVVVSRKAVLEEQNARKREELLASL--QEGQIVKGIVRRITNF 484 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ E +E ++ GD ++ + V + Sbjct: 485 GAFVDLGGLDGLLHISEMSWHRINHPQEVVKVGDELEVMVLKVDTQN 531 Score = 40.4 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRR 191 GE++ G V +V V+VD+ S+GVI R E +E ++ GD ++ + Sbjct: 298 GELVKGIVVQVGMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVVIKAED 357 Query: 192 EQRGPQVLLS--RTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 + +++LS R + + G + +K V R+ Sbjct: 358 NEG--KIILSKERADAEKAWDGLEE---AMEQGTI-IKGVVRE 394 >gi|311895436|dbj|BAJ27844.1| putative ribosomal protein S1 [Kitasatospora setae KM-6054] Length = 496 Score = 43.5 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 40 GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDEIEALVL--QK 97 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 98 EDKEGRLILS 107 >gi|281357105|ref|ZP_06243595.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548] gi|281316663|gb|EFB00687.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548] Length = 607 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 G+I+ G + +VD+G ++G + E + + GD++ Y+ ++ P Sbjct: 64 KGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLKFDEANIGDKIDVYLEEIENRNNMP 123 Query: 197 QVLL 200 ++ L Sbjct: 124 EISL 127 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 12/118 (10%) Query: 86 DRDPSIDIGGVVSDPLPPM----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 D P ++ + + R + +++ ++++ + +R + E K V E+ Sbjct: 178 DVGPVHNMDDYIGKEFDVKIIKINLDRRNIVVSRRELLEETLKDQRSKLLGEMK--VDEL 235 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G VK + +DLG DG++ + E L+ G+ ++ I + +E+ Sbjct: 236 RKGVVKNITDFGAFIDLGGVDGLLHITDISWGRISHPSEVLKVGEEIEVVIIGIDKEK 293 >gi|238916861|ref|YP_002930378.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750] gi|238872221|gb|ACR71931.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750] Length = 355 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+ I GTVK V +DLG DG++ E ++ + GD VK +I ++ Sbjct: 184 KEGDTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIKEI- 242 Query: 191 REQRGPQVLLSRTHPQF 207 G ++ LS +P Sbjct: 243 ---NGDKIALSVKYPDL 256 >gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385] gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385] Length = 488 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV ++++ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEIDPNEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|45384012|ref|NP_990504.1| DNA repair protein RAD51 homolog 1 [Gallus gallus] gi|585770|sp|P37383|RAD51_CHICK RecName: Full=DNA repair protein RAD51 homolog 1 gi|299819|gb|AAB26354.1| homolog to S.cerevisiae [Gallus gallus] Length = 339 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L G+ VE +A E+ +I+G Sbjct: 13 TSAEEESFGPEPISRLEQCGINANDV-----KKLEEAGYHTVESVAHAPKKELLNIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter uraniireducens Rf4] gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4] Length = 577 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 22/126 (17%) Query: 356 NERTQFFMQAINVDEIIAH-----------LLVAEGFA-DVEELACVKISEIASIEGFDE 403 E + F + ++ EI L EG + VE+L E+ I G E Sbjct: 4 QEIARIFSEMADILEIKGDNPFKIRAYRRAALNIEGLSRSVEDL---SRDELLEIPGIGE 60 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIPGIDSKIKVALGE-NGIKTME 460 E A +I EY+ I K++ S L ++PG+ K + E I +++ Sbjct: 61 ELAAKI----EEYIGTGAIHAHDKLKGEIPSGLLSLLAVPGLGPKTARQIFEQRHIASID 116 Query: 461 DLAGCS 466 DL + Sbjct: 117 DLERAA 122 >gi|159038909|ref|YP_001538162.1| 30S ribosomal protein S1 [Salinispora arenicola CNS-205] gi|157917744|gb|ABV99171.1| RNA binding S1 domain protein [Salinispora arenicola CNS-205] Length = 493 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|6755276|ref|NP_035364.1| DNA repair protein RAD51 homolog 1 [Mus musculus] gi|585772|sp|Q08297|RAD51_MOUSE RecName: Full=DNA repair protein RAD51 homolog 1; AltName: Full=RAD51 homolog A gi|397831|dbj|BAA02961.1| MmRad51 [Mus musculus] gi|407349|dbj|BAA02718.1| Rad51 protein [Mus musculus] gi|12847236|dbj|BAB27489.1| unnamed protein product [Mus musculus] gi|20073272|gb|AAH27384.1| RAD51 homolog (S. cerevisiae) [Mus musculus] gi|26345412|dbj|BAC36357.1| unnamed protein product [Mus musculus] gi|74185375|dbj|BAE30162.1| unnamed protein product [Mus musculus] gi|74185412|dbj|BAE30179.1| unnamed protein product [Mus musculus] gi|126540733|emb|CAM45951.1| RAD51 homolog (S. cerevisiae) [Mus musculus] gi|148695989|gb|EDL27936.1| RAD51 homolog (S. cerevisiae), isoform CRA_b [Mus musculus] gi|1093114|prf||2102359A RAD51-like protein Length = 339 Score = 43.5 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L G+ VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILTEA 78 >gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 459 Score = 43.5 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + + S +Q I ++ R+ ++R E GE G V + VD+G Sbjct: 193 IEINRHRNRLILSERQAIQER-RDVMKERLIEELT--EGETRRGRVTSITDFGAFVDIGG 249 Query: 161 SDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL-FH 213 +DG++ E E L+ G+ V Y+ + E++ + + RT P+ ++ Sbjct: 250 ADGLVHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEEKKIALSIKRTQPEPWSRVAMK 309 Query: 214 MEVPEIYNGIVQ 225 EV ++ G V Sbjct: 310 YEVGQLVLGTVT 321 >gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] Length = 666 Score = 43.5 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 22/106 (20%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 NV + A +L F +++LA + E+ ++ A I+ + E + + + Sbjct: 517 NVGQRAARVLADH-FGSLDKLAAATVEELTALPDIGPRIAENIRE---FFGEPRNRAVLE 572 Query: 427 KIRELGVSEELCS------------------IPGIDSKIKVALGEN 454 K+++ GV E + +PG+ + L Sbjct: 573 KLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEAEELITR 618 >gi|297559937|ref|YP_003678911.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 496 Score = 43.5 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD+V++ + ++ Sbjct: 38 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDQVEALVL--QK 95 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 96 EDKEGRLILS 105 >gi|289581501|ref|YP_003479967.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC 43099] gi|289531054|gb|ADD05405.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC 43099] Length = 343 Score = 43.5 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V A L GF + LA SE+++ E TA +I AR+ + Sbjct: 6 LETLPGVGPATADKLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAAD 62 >gi|219851102|ref|YP_002465534.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c] gi|219545361|gb|ACL15811.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c] Length = 147 Score = 43.5 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 G +G +G ++ + L ++++V + TF+ N +RPA + ++ D + G++ ++ Sbjct: 46 GLAIGKKGENIRRLQKVL-GRRLEMVEYDEAPFTFLSNIVRPAEIARLDEDGEGGQVNLL 104 Query: 312 VPKE-QLSLAIGRRGQNV 328 V + L +AIG+ G NV Sbjct: 105 VRRRSDLGIAIGKGGCNV 122 >gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa DSM 14429] gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa DSM 14429] Length = 388 Score = 43.5 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + V + A L G+ ++A + E+A I G E+ A +I A++ + Sbjct: 84 EIEGVGRVTAQKLREAGYNTARDVAFASVKELAEILG-SEDRAKQIIAAAQKLI 136 >gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] Length = 598 Score = 43.5 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + V T I + RD Sbjct: 420 EVIEEALEQARQGRLAIMDHMLQTIDQPRNELSAYAPKVV-------TMNIKPEKIRDVI 472 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G++ + + Q +I + RE + +VG++ + Sbjct: 473 GPGGKKINEIIDETGVKLDIEQDGQIFIGAVDQEMINRAREIIEEITRE---AEVGQVYN 529 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 VKR+E V+L + IS E L+ GD ++ + ++ ++ R Sbjct: 530 AKVKRIEKYGAFVELFPGKDALLHISQISTERINKVEDVLKLGDSIEVKVTEIDKQGR 587 >gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. RS9917] gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. RS9917] Length = 432 Score = 43.5 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ T+ G V DL G I R EN G + +V E Sbjct: 244 EKQGKVVQVTISGFNRGGVTCDLEGLRGFIPRSHLQDGENHEALVGKTLGVAFLEVNAET 303 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 304 R--KLVLSEKRAATAARFAELEVGQLVEGTV 332 Score = 37.0 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 GE+++GTV +E V VD+ G + G + + E T +E G V+ + Sbjct: 160 GEVVTGTVIGLESDGVYVDIGGKAPGFMPKSECGLGVITNLKERFPKGLEVEVLVTR 216 >gi|326918720|ref|XP_003205636.1| PREDICTED: helicase POLQ-like [Meleagris gallopavo] Length = 1028 Score = 43.5 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + IE A ++ A+ L Sbjct: 950 LMEVAGVLEARAKQLYNAGYKTLAHLANANPETLVKTIEHLSRRQAKQMVSSAKMLLTEK 1009 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1010 AEALQEEVEEL 1020 >gi|253827272|ref|ZP_04870157.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491] gi|253510678|gb|EES89337.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491] Length = 558 Score = 43.5 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 21/106 (19%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR-----DE 169 K + +K+RE ++KDK ++ G V + G IV+ + + + E Sbjct: 99 KAIRREKIREYI-KNLGEDYKDK---VVEGVVIKKNKGGYIVEGEGIEFFMPKFAAAFKE 154 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 E G R+K+ I +V+ E+ V++SR +LF +E Sbjct: 155 GSKNE----GRRIKACIINVKPEED--SVVISR------KRLFEIE 188 >gi|288924793|ref|ZP_06418730.1| ribosomal protein S1 [Prevotella buccae D17] gi|315607811|ref|ZP_07882804.1| 30S ribosomal protein S1 [Prevotella buccae ATCC 33574] gi|288338580|gb|EFC76929.1| ribosomal protein S1 [Prevotella buccae D17] gi|315250280|gb|EFU30276.1| 30S ribosomal protein S1 [Prevotella buccae ATCC 33574] Length = 592 Score = 43.5 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%) Query: 131 YLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E +K +++ GTV V+ V+V++G SDG+I E L+ GD+V+ Y+ Sbjct: 35 YDETLNKISENQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRYNPELKVGDKVEVYVE 94 Query: 188 DVRREQRGPQVLLSRTHPQFMV 209 +E + Q++LS + Sbjct: 95 --NQEDKKGQLVLSHKKARLSK 114 Score = 37.0 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ V + + +I+ EA+R Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+I+ GTVK + V VDLG DG+I + E + ++ Sbjct: 207 ISKLE--KGQILEGTVKNITSYGVFVDLGGVDGLIHITDLSWGRVSDPHEVVALDQKINV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|282859452|ref|ZP_06268557.1| 30S ribosomal protein S1 [Prevotella bivia JCVIHMP010] gi|282587680|gb|EFB92880.1| 30S ribosomal protein S1 [Prevotella bivia JCVIHMP010] Length = 589 Score = 43.5 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + +++ GTV V+ VIV++G SDG+I E L+ GD+V+ Y+ + ++RG Sbjct: 43 QENQVVEGTVISVDKKEVIVNIGYKSDGIIPASEFRYNPELKAGDKVEVYVES-QEDKRG 101 Query: 196 PQVLLS 201 Q++LS Sbjct: 102 -QLVLS 106 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ V + + +I+ EA+R Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+I+ GTVK + V +DLG DG+I + E + +++K Sbjct: 207 ISHLE--KGQILEGTVKNITTYGVFIDLGGVDGLIHITDLSWGRVSDPHEVVTLDEKIKV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|326919838|ref|XP_003206184.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Meleagris gallopavo] Length = 339 Score = 43.5 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E+ + + Q + A +V L G+ VE +A E+ +I+G Sbjct: 13 TSAEEESFGPEPISRLEQCGINANDV-----KKLEEAGYHTVESVAHAPKKELLNIKGIS 67 Query: 403 EETAVEIQGRA 413 E A +I A Sbjct: 68 EAKADKILAEA 78 >gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185] gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185] Length = 499 Score = 43.5 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD V++ + ++ Sbjct: 34 GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDDVEALVL--QK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|37931470|gb|AAP13463.1| Rad51p [Kluyveromyces lactis] Length = 369 Score = 43.5 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 340 DIITEEEDSINRQKDFNERTQFFM-----QAINVDEIIAHLLVAEGFADVEELACVKISE 394 D+ +++ ++ + F+ Q + L G E +A + Sbjct: 27 DVQQRIQETDFMAEEDDVALAAFVPIEKLQVNGITSGDIKKLRESGLHTAEAVAYAPRKD 86 Query: 395 IASIEGFDEETAVEIQGRA 413 + I+G E A ++ A Sbjct: 87 LMEIKGISEAKADKLLAEA 105 >gi|304314701|ref|YP_003849848.1| DNA polymerase IV [Methanothermobacter marburgensis str. Marburg] gi|302588160|gb|ADL58535.1| predicted DNA polymerase IV [Methanothermobacter marburgensis str. Marburg] Length = 557 Score = 43.5 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCS 439 D+E++A + + G E A +I E L ++L +++ + L S Sbjct: 48 EDIEDVA--AQGRLRELPGIGENIAAKI----EEILSTGSLSLLERLAGEYPVDLDSLLS 101 Query: 440 IPGIDSKIKVALGEN-GIKTMEDLAGCS 466 + G+ K L E GIKT++DL + Sbjct: 102 VEGVGPKTVKLLYEELGIKTLDDLEEQA 129 >gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii] gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii] Length = 571 Score = 43.5 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 10/130 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L RD D +G + ++ R V +++V++++ R+ R Sbjct: 140 PGSQIDLHPVRDLD--GLVGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTLSTL 197 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G++I GTVK + +DLG DG++ + E + D+V+ + Sbjct: 198 K--EGQLIQGTVKNITDYGAFIDLGGIDGLLHITDMSWGRVGHPSELFQVSDKVEVTVLK 255 Query: 189 VRREQRGPQV 198 RE + Sbjct: 256 YDRETGRISL 265 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 14/95 (14%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE-------T 170 Q R+ ++ ++ +VG+ I+G V ++ + ++L G+ +G+I E Sbjct: 442 KQLSRDPWEEQIPNKY--RVGDSITGKVSKIADFGLFIELDGDVEGLIHISEVGLDANVR 499 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLS-RTH 204 + E +PGD V + I V R++R ++ LS R H Sbjct: 500 M-EEKFKPGDDVTAKIIKVDRDER--KIALSLRDH 531 Score = 37.0 bits (85), Expect = 8.7, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE--NLRPGDRVKSYIYDVRREQR 194 G I G V + V+VD+G S+G+I D+ E L+ GDR++ Y+ + Sbjct: 30 EGTITEGMVVAIGKDKVVVDIGYKSEGMIPADQFSHEELAQLKVGDRLQVYLEECEDADG 89 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 ++LS+ M +E ++ K +SR G Sbjct: 90 N--LVLSKEKADKMKIWEELETLHKEEKSIEGKIISRIKG 127 >gi|297564598|ref|YP_003683570.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849047|gb|ADH62062.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946] Length = 598 Score = 43.5 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 18/147 (12%) Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +++VE + ++S A + ++ P A S ++ Q ++ Sbjct: 10 VQIVETTDGTPPKPEVSASEAPK--AEAPTPHMATETAPVQANAPEAAPSGGNLMEQALQ 67 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIR----RDETISREN--- 175 +AE + + G+I+ GTV V + V VD+G ++G+I +E + E Sbjct: 68 DAEAR--LEKTVQR-GQILQGTVVFVGHEGVAVDIGARTEGIIPFNQLSEENLPEEELKK 124 Query: 176 -LRPGDRVKSYIYDVRREQRGPQVLLS 201 L+PGD V Y+ E Q++LS Sbjct: 125 LLKPGDTVTVYVVRADLENG--QIILS 149 Score = 37.4 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 14/127 (11%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA--KQVIIQKVREAERDRQYL 132 Q+ LK + D + S P+ ++ R + ++ ++++ +++ R + Sbjct: 196 PASQVDLKRTPELDEYVGQ----SFPVKIIELNRKKGRVILSRRAVVEEEQKSLRAKLLS 251 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYI 186 + K +++ G V V V V LG DG++ R E +E ++ G V++ + Sbjct: 252 QLKP--DDVVEGQVVEVTEFGVFVALGGVDGLVHRSEITWGRFTHPKEVIQKGQTVRAKV 309 Query: 187 YDVRREQ 193 V E+ Sbjct: 310 LSVDPER 316 >gi|257053376|ref|YP_003131209.1| 50S ribosomal protein L32e [Halorhabdus utahensis DSM 12940] gi|256692139|gb|ACV12476.1| Ribosomal protein L32e [Halorhabdus utahensis DSM 12940] Length = 335 Score = 43.5 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 26/159 (16%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY----- 416 + E A L GF +++L + + G A I+ + Sbjct: 9 LTDVSGIGEETAGALRESGFETIDDLREADEDALTEVTGIGNALAARIKADVGDVEVDED 68 Query: 417 ---------------------LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENG 455 + + + + ++L I G+ L E G Sbjct: 69 AEAEIEESEESTADSDADASDDAADEADAEPEEDDAAAYDDLTDISGVGEGTAENLREAG 128 Query: 456 IKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 +T+ED+A DL + + L Sbjct: 129 FETVEDVARAEQSDLTEVEGIGNALAARIQADVGELDVS 167 >gi|222154117|gb|ACM47238.1| RAD51 recombination protein [Triticum aestivum] Length = 343 Score = 43.5 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 32 LQASGIAAVDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIEAASK 84 >gi|18026317|gb|AAL55473.1|AF016851_1 hemin-binding protein [Prevotella intermedia] Length = 591 Score = 43.5 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + +++ G V ++ V+V++G SDG+I E L+ GD+V+ Y+ +E + Sbjct: 43 QEHQVVEGEVISIDKKEVVVNIGYKSDGIIPASEFRYNPELKVGDKVEVYVE--NQEDKS 100 Query: 196 PQVLLS 201 Q++LS Sbjct: 101 GQLILS 106 Score = 37.0 bits (85), Expect = 8.8, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ V + + +I+ EA+R Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+I+ G VK + V VDLG DG+I + E + ++ Sbjct: 207 ISHLE--KGQILEGVVKNITSYGVFVDLGGVDGLIHITDLSWGRINDPHEVVELDQKINV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|91080301|ref|XP_974146.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum] gi|270006417|gb|EFA02865.1| spindle A-like protein [Tribolium castaneum] Length = 338 Score = 43.5 bits (102), Expect = 0.090, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 11/88 (12%) Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389 LAS T ID EE + ++ +Q + L GF +E +A Sbjct: 5 LAS--TDTVID----EEAKAGGPQPLSK-----LQVNGITAGDLKKLEDAGFHSIESIAY 53 Query: 390 VKISEIASIEGFDEETAVEIQGRAREYL 417 +A+I+G E ++ A +++ Sbjct: 54 TPKKVLAAIKGISEAKVNKLLAEAAKFV 81 >gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus marinus str. MIT 9313] gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus marinus str. MIT 9313] Length = 421 Score = 43.5 bits (102), Expect = 0.090, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRRE 192 +K G++ V G V DL G I R + + EN G + +V E Sbjct: 232 MEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENHEALIGKTLGVAFLEVNPE 291 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 292 TR--KLVLSEKRAATAARFSELEVGQLVEGQV 321 >gi|225568091|ref|ZP_03777116.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM 15053] gi|225163044|gb|EEG75663.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM 15053] Length = 376 Score = 43.5 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + ++D S + + + R V ++ ++ R ++ + + ++G+ Sbjct: 138 VSDTYEKDLSKYQDQEIEFVISEFNPRRNRVIGDRRQLLVAARAEKQKELFEKL--QIGD 195 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 + GTVK V +DLG DG++ E ++ + GD VK I D+ Sbjct: 196 TVEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFQVGDIVKVLIKDINDT-- 253 Query: 195 GPQVLLSRTHPQ 206 ++ LS P+ Sbjct: 254 --KIALSLKFPE 263 >gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941] Length = 388 Score = 43.5 bits (102), Expect = 0.092, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + +D R + +++ Q+ R+A++ R E + G+I++G V ++ Sbjct: 169 VGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP--GDILTGRVNQLTNF 226 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG +DG+ E RE L PG V+ + ++ E+ Sbjct: 227 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAER 273 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 11/94 (11%) Query: 119 IQKVREAERDRQYLEF---KDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET--IS 172 +Q+ + + + ++ + + GE+ G V ++E G ++V +G +G+I + I Sbjct: 9 VQETEDFDWTQMLDDYDYARPQRGEVREGVVMKIEDGGILVSIGTKREGIIPIADVRAIG 68 Query: 173 RE---NLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 E NL+ GDR++ Y+ D E R ++LS T Sbjct: 69 DEVLNNLKVGDRIQVYVQD--PENRQGDLVLSLT 100 >gi|221118522|ref|XP_002162778.1| PREDICTED: similar to High density lipoprotein binding protein (vigilin) [Hydra magnipapillata] Length = 1284 Score = 43.5 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 40/176 (22%) Query: 253 ACVGMRGSRVQAVVTELRDEKI---------DIVV---WSPDSATFVINALRPAIVTKVV 300 A +G G +Q+++ E D I DI+V D A + Sbjct: 691 AMIGPGGKLIQSIMNECGDVNIRFPSEDAKSDIIVIRGAKEDVEK--------AEIQLKK 742 Query: 301 L----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 L E+ EV E IG+ G N+R + TG I T+ +++ Sbjct: 743 LAEERQENNYTAEVTAKAEHHRFLIGKGGVNIRKVREKTGARIIFPTKNDENKELITIIG 802 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +V+E A LL +++L + SE+ D + E+ R Sbjct: 803 T-------KESVEEAKADLLNK-----IKDLNNIVESEVL----IDPKHHRELVAR 842 >gi|145595655|ref|YP_001159952.1| 30S ribosomal protein S1 [Salinispora tropica CNB-440] gi|145304992|gb|ABP55574.1| SSU ribosomal protein S1P [Salinispora tropica CNB-440] Length = 493 Score = 43.5 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|50309711|ref|XP_454867.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644002|emb|CAG99954.1| KLLA0E20241p [Kluyveromyces lactis] Length = 369 Score = 43.5 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 340 DIITEEEDSINRQKDFNERTQFFM-----QAINVDEIIAHLLVAEGFADVEELACVKISE 394 D+ +++ ++ + F+ Q + L G E +A + Sbjct: 27 DVQQRIQETDFMAEEDDVALAAFVPIEKLQVNGITSGDIKKLRESGLHTAEAVAYAPRKD 86 Query: 395 IASIEGFDEETAVEIQGRA 413 + I+G E A ++ A Sbjct: 87 LMEIKGISEAKADKLLAEA 105 >gi|291294513|ref|YP_003505911.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM 1279] gi|290469472|gb|ADD26891.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279] Length = 558 Score = 43.5 bits (102), Expect = 0.094, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN---------LRPGDRVKSYIYD 188 G+I++GTV V V+VD+G ++ VI + ++ EN L+PGD V +Y+ Sbjct: 39 GQIVTGTVVLVTNDGVMVDIGARTEAVIPFN-QLTEENLSEEELKNLLKPGDTVTAYVVR 97 Query: 189 VRREQRGPQVLLS 201 E QV+LS Sbjct: 98 ADLENG--QVVLS 108 >gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829] gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829] Length = 409 Score = 43.5 bits (102), Expect = 0.094, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVR 190 G++++GTV ++E+ V++D+G S+GVI E E + GD +++ + + Sbjct: 45 EGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEELVHMGDTIEALVL--Q 102 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 103 KEDKEGRLILS 113 >gi|222154119|gb|ACM47239.1| RAD51 recombination protein [Triticum aestivum] Length = 343 Score = 43.5 bits (102), Expect = 0.094, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 32 LQASGIAAVDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIEAASK 84 >gi|114797862|ref|YP_758926.1| 30S ribosomal protein S1 [Hyphomonas neptunium ATCC 15444] gi|114738036|gb|ABI76161.1| ribosomal protein S1 [Hyphomonas neptunium ATCC 15444] Length = 659 Score = 43.5 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISRENLRPGDRVKSYIYDVRREQR 194 + G++I TV R++ V+VD+G ++G I E + + PGD + Y+ + Sbjct: 26 QEGQVIPATVLRIDNDAVVVDIGLKTEGRIPTKEFMLEDKQPAPGDLIDVYLDRIENALG 85 Query: 195 GPQVLLSRTHPQFMVKLFHME 215 +LSR + + +E Sbjct: 86 EA--VLSRDKARREERWIKLE 104 >gi|317506138|ref|ZP_07963961.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255560|gb|EFV14807.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 482 Score = 43.5 bits (102), Expect = 0.096, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGT+ +VE V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVSGTIVKVERDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDTVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|16081891|ref|NP_394295.1| ski2-like helicase [Thermoplasma acidophilum DSM 1728] gi|18202974|sp|Q9HJX7|HELS_THEAC RecName: Full=Putative ski2-type helicase gi|10640112|emb|CAC11964.1| DNA helicase related protein [Thermoplasma acidophilum] Length = 674 Score = 43.5 bits (102), Expect = 0.096, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 337 WTIDIITEEEDSINRQKD-FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + ++ E R K+ E + V + A L G +E++A I Sbjct: 588 YKPEVRRMLEILNLRIKEGIREDILQLVLIPGVGRVRARRLYDAGLRSIEDVASASPDRI 647 Query: 396 ASIEGFDEETAVEIQGRAR 414 +I GF + A I RAR Sbjct: 648 KAIYGFSDTLANAIIRRAR 666 >gi|323703064|ref|ZP_08114719.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum nigrificans DSM 574] gi|323531958|gb|EGB21842.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum nigrificans DSM 574] Length = 667 Score = 43.5 bits (102), Expect = 0.098, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRR 191 GE+I G V +V V+VD+G S+GV+ R E ++ ++ GD ++ + V+ Sbjct: 294 GELIKGVVVQVGPDEVMVDVGAKSEGVVPRKELACYEVDNPQDVVKVGDEIECMV--VKA 351 Query: 192 EQRGPQVLLS--RTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E +++LS R + + NG V +K V R+ Sbjct: 352 EDNEGKLILSKVRADAEKAWGSLEQ---AMENGTV-IKGVVRE 390 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 + V + M+ R V +++ ++++ +R + G+ + G V+R+ Sbjct: 423 LNQEVEVRVIEMNKQRKKVVVSRKAVLEEQYARKRAELLA--SIQEGQTVKGIVRRLTNF 480 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ E E + GD ++ + V RE Sbjct: 481 GAFVDLGGLDGLLHISEMSWYRINHPSEVVNVGDEIEVMVLKVDREN 527 >gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 397 Score = 43.5 bits (102), Expect = 0.098, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 8/81 (9%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------S 172 +Q+ R+++++R + G +++G V ++ +DLG +DG+ E Sbjct: 192 MQRWRQSQKERLLETLEP--GAVVTGRVNQLTPFGAFIDLGGADGLAHISELSWQRVNHP 249 Query: 173 RENLRPGDRVKSYIYDVRREQ 193 RE L+PG V+ Y+ +V R++ Sbjct: 250 REVLQPGQEVQVYVLEVDRDR 270 >gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis JCM 11548] gi|166218766|sp|A3MXX9|RADA_PYRCJ RecName: Full=DNA repair and recombination protein radA gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis JCM 11548] Length = 332 Score = 43.1 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + + + L +G+ V ++A + E+A I G EE A +I AR+ L Sbjct: 28 ELEGIGRVTGAKLKEKGYYTVRDVAYASVKELAEIVG-SEERAQQIVEAARKML 80 >gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] Length = 694 Score = 43.1 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A +A+ F D+EEL + + +I+ E+ A I L ++ + K Sbjct: 544 VGETVAKK-IAKSFTDIEELENADLERLINIDEIGEKIAQSIISYFANPL-NRELIERLK 601 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I L S + + G L I S D+ E GG Sbjct: 602 IAGLQFSRKEEDLSGYTD----KLAGQSIVISGVFTHHSRDEYKDLIEKNGGK 650 >gi|197092359|gb|ACH42252.1| RAD51A recombination protein [Triticum aestivum] gi|222154121|gb|ACM47240.1| RAD51 recombination protein [Triticum aestivum] Length = 342 Score = 43.1 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 31 LQASGIAAVDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIEAASK 83 >gi|288802929|ref|ZP_06408366.1| ribosomal protein S1 [Prevotella melaninogenica D18] gi|288334746|gb|EFC73184.1| ribosomal protein S1 [Prevotella melaninogenica D18] Length = 594 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + +++ GTV V+ V+V++G SDG+I E L+ GD+V+ Y+ + + ++RG Sbjct: 46 QEHQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRYNPELKAGDKVEVYVEN-QEDKRG 104 Query: 196 PQVLLS 201 Q++LS Sbjct: 105 -QLVLS 109 >gi|167041245|gb|ABZ06001.1| putative S1 RNA binding domain protein [uncultured marine microorganism HF4000_005D21] gi|167045749|gb|ABZ10395.1| putative S1 RNA binding domain protein [uncultured marine bacterium HF4000_APKG3108] Length = 571 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISRE--NLRPGDRVKSYIYDVRRE 192 K GEI +G V +V + VDLG S+G I +E +++E + G +++ + + + Sbjct: 30 KEGEITTGVVSKVGKNFIFVDLGLKSEGAIPVEEFKLTKEIDKIEIGSKIEVLLEKIENK 89 Query: 193 QRGPQVLLSR 202 V++SR Sbjct: 90 TGN--VVISR 97 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 10/130 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI LK ++ D + + +D R + +++ I++K+ +RD+ + Sbjct: 143 PGSQIDLKPLKNFDHLMKVPQT--FECVKLDKRRGNIVLSRRAILEKILVRDRDKIISKL 200 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+I+SGT+K + VDL D ++ + + L G +K+ I Sbjct: 201 K--EGDIVSGTIKNLTEWGAFVDLNGVDALLHITDISWRRINKPADLLSIGQSIKAKIIK 258 Query: 189 VRREQRGPQV 198 + + + Sbjct: 259 IEEGTKKISL 268 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 21/152 (13%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI------IQK 121 VV+ + +Y IS+K + + D I + Q K I +K Sbjct: 381 VVKNITDYGLFISVKDS-ELDGMIHYKDLNWSEKESELEKYKKNQLIKFKILEINQEKEK 439 Query: 122 VREAERDRQYLEFK----DKVGEIISGTVKRVEYGNVIVDLGNSDGVIR-RDETISRE-- 174 +R + FK K+ ++++ V + V GN D ++ + +++E Sbjct: 440 IRLGIKQLTQDPFKFFMNKKISDVVTAIVVSSSNDGIHVYAGNKDLLLLIKRSQLAKEPE 499 Query: 175 -----NLRPGDRVKSYIYDVRREQRGPQVLLS 201 GDRV I ++ +E R +V+LS Sbjct: 500 NQRPSRWARGDRVDCMIIELDKENR--KVVLS 529 >gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1] gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1] Length = 393 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + +D R + +++ Q+ R+A++ R E + G+I++G V ++ Sbjct: 169 VGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP--GDILTGRVNQLTNF 226 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG +DG+ E RE L PG V+ + ++ E+ Sbjct: 227 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAER 273 >gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810] gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810] Length = 493 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVEVGDEIEALVL--QK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|33866272|ref|NP_897831.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus sp. WH 8102] gi|33639247|emb|CAE08255.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus sp. WH 8102] Length = 406 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + +N + G + +V E Sbjct: 218 EKHGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQEGDNHQELVGKTLGVAFIEVNSET 277 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS+ + +EV ++ G+V Sbjct: 278 R--KLVLSQKRAAVAARFQELEVGQLVEGVV 306 >gi|302346248|ref|YP_003814546.1| 30S ribosomal protein S1 [Prevotella melaninogenica ATCC 25845] gi|302151016|gb|ADK97277.1| 30S ribosomal protein S1 [Prevotella melaninogenica ATCC 25845] Length = 594 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + +++ GTV V+ V+V++G SDG+I E L+ GD+V+ Y+ + + ++RG Sbjct: 46 QEHQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRYNPELKAGDKVEVYVEN-QEDKRG 104 Query: 196 PQVLLS 201 Q++LS Sbjct: 105 -QLVLS 109 >gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum DSM 13514] gi|166218765|sp|A4WN87|RADA_PYRAR RecName: Full=DNA repair and recombination protein radA gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum DSM 13514] Length = 333 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + V ++ L +GF V+++A + E+A I G +EE A++I AR+ L Sbjct: 29 ELEGVGKVTGAKLKEKGFYTVKDVAFASVKELAEIIG-NEERALQIIESARKML 81 >gi|239623627|ref|ZP_04666658.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales bacterium 1_7_47_FAA] gi|239521658|gb|EEQ61524.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales bacterium 1_7_47FAA] Length = 665 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ-------- 120 V +V + + ++ AR P+ + D + A Q + VI + Sbjct: 410 VAQVLDGGLSVEVEGARVFIPASLVSDSYE-----KDLSKYAGQDIEFVITEFNPKRRRI 464 Query: 121 -----KVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 ++ A++ + E ++ G+ + GTVK V +DLG +DG++ E Sbjct: 465 IGDRKQLLVAQKAQLKEELFSRIQIGDAVEGTVKNVTDFGAFIDLGGADGLLHISEMSWG 524 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + GD+V+ I D++ G ++ LS P+ Sbjct: 525 RVENPKKVFKAGDQVRVLIKDIQ----GEKIALSLKFPE 559 >gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus haemolyticus JCSC1435] gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus haemolyticus JCSC1435] Length = 700 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + I + RD Sbjct: 521 EVIEEALEQARQGRLAIMDHMLQTIDQPRKELSAYAPKV-------EIMHIKPEKIRDVI 573 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G + + + Q +I + RE D +VG++ + Sbjct: 574 GPGGKKINEIIDETGVKLDIEQDGTIFIGAIDQDMINRAREIIEDITRE---AEVGQVYN 630 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR-------PGDRVKSYIYDVRREQR 194 VKR+E V+L + IS+E + GD + I ++ ++ R Sbjct: 631 AKVKRIEKYGAFVELFAGKDALLHISQISKERINKVEDVLSIGDSIDVKITEIDKQGR 688 >gi|71395846|ref|XP_802340.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70862017|gb|EAN80894.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 500 Score = 43.1 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 14/204 (6%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA L DI ED R+ D + + Q +E +A L A Sbjct: 259 READNEKLAEDLAQREADIEKLAEDLAQREADNEKLAEDLAQREADNEKLAEDLAQRE-A 317 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGR-AREYLEGIDITLQKKIRELGVSEELCSIP 441 D+E+LA ++A E +E+ E+ R A ++ ++ E ++E+L Sbjct: 318 DIEKLA----EDLAQREADNEKLVEELAQREADNEKLTDELAQREADNE-KLAEDLAQRE 372 Query: 442 GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESM 501 + K+ L + E LA +L G + + + ++E + Sbjct: 373 ADNEKLAEDLAQREADN-EKLAE----ELAQREAVIEGAEADASKTIEGVYSRCRELEEL 427 Query: 502 IIHARYKMGWIEKEKVADEEVQDA 525 AR ++ + + E+ DA Sbjct: 428 --AARRELAATGDVDILERELADA 449 >gi|322790963|gb|EFZ15611.1| hypothetical protein SINV_02512 [Solenopsis invicta] Length = 341 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDSKIKVALG 452 E + G E+ A +I E+L+ + + E VS L + + GI L Sbjct: 60 EAKKLPGIGEKIAKKI----DEFLQTGKLQKLEDKDETNVSISLLARVSGIGPAKAKELV 115 Query: 453 ENGIKTMEDL 462 E GIKT+EDL Sbjct: 116 EAGIKTLEDL 125 >gi|157364502|ref|YP_001471269.1| RNA-binding S1 domain-containing protein [Thermotoga lettingae TMO] gi|157315106|gb|ABV34205.1| RNA binding S1 domain protein [Thermotoga lettingae TMO] Length = 539 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 123 REAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRE 174 R+A +R EF + KVG+ I GTV+ + + I+D + R E + Sbjct: 171 RKALLERLKKEFFNTHKVGDEIEGTVESIRMNHAIIDFDGIKAFLPRSEMSHDPSVSPDD 230 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLS 201 L+ D++K I ++ + + +S Sbjct: 231 ILKKNDQIKVKIIEINPARS--SITVS 255 Score = 37.0 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 124 EAERDRQYLEFKDKV----GEIISGTVKRVEY-GNVIVDLG-NSDGVIRRDETISR-ENL 176 E E+ + E+ D V G ++ V R+ + VD G +G+I+++E I E Sbjct: 4 EHEKMENFQEYLDFVETNPGSVVEAVVTRINPAEGISVDFGGKGEGIIQQNELIHSIEKY 63 Query: 177 RPGDRVKSYIYDVRREQ 193 G ++K+ I + E+ Sbjct: 64 SVGQKIKAQILKINDEE 80 >gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272] gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272] Length = 489 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +++ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 39 GDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVALGDTVEALVL--QK 96 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 97 EDKEGRLILSKKRAQYERAWGDIEKIKAEDGVVE 130 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 8/115 (6%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 R RD IG + + +D R V +++ +++ + A R E K G++ G Sbjct: 160 RVRDLDPYIGQKIEAKIIELDKNRNNVVLSRRAWLEQTQSAVRQNFLTELK--KGQVRKG 217 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + + VDLG DG++ E E ++ GD V + DV ++ Sbjct: 218 VISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEVVQVGDEVTVEVLDVDMDR 272 >gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl] Length = 391 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 + + + +D R + +++ Q+ R+A++ R E + G+++ G V ++ Sbjct: 170 VNQEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQP--GDVLVGRVNQLTNF 227 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG +DG+ E RE L+PG VK + ++ RE+ Sbjct: 228 GAFIDLGGADGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRER 274 >gi|307177534|gb|EFN66645.1| Protein RRP5-like protein [Camponotus floridanus] Length = 1398 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 36/136 (26%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + + + IG ++ + ++ K I K+ ++ +Q F +GE+I G Sbjct: 544 HNMNWNYSIGQTITVCIESIE---------KYEIKLKIVTEKQKQQTENFS--IGEMIEG 592 Query: 145 TVK---------RVEYGNVIVDLGNSDGVIRRDETIS--------RENLRPGDRVKSYIY 187 TV R+ GN D + + PGD + + ++ Sbjct: 593 TVIESSIKGVYLRIHRGN---DENVTTAFLPAGHIAPCIEIGSLLASKYNPGDVISALVF 649 Query: 188 DVRREQRGPQVLLSRT 203 + P ++LSRT Sbjct: 650 ATK-----PSIILSRT 660 >gi|307326059|ref|ZP_07605257.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113] gi|306888281|gb|EFN19269.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113] Length = 504 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|2500107|sp|Q40134|RAD51_SOLLC RecName: Full=DNA repair protein RAD51 homolog gi|1143810|gb|AAC23700.1| LeRAD51 [Solanum lycopersicum] Length = 342 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 24/72 (33%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 ++++ +QA + + L G VE + E+ I+G E Sbjct: 12 QDQNDEIEDVQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVVYAPRKELLQIKGISE 71 Query: 404 ETAVEIQGRARE 415 +I A + Sbjct: 72 AKVDKIIEAASK 83 >gi|309790392|ref|ZP_07684957.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides DG6] gi|308227584|gb|EFO81247.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides DG6] Length = 381 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 + + + +D R + +++ Q+ R+A++ R E + G+++SG V ++ Sbjct: 162 VNQEIPLKVIEVDRERNRLVLSERSATQEWRKAQKQRLLTELQP--GDVLSGRVNQLTNF 219 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG +DG+ E RE L PG VK + ++ R++ Sbjct: 220 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVKVVVVEIDRDR 266 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 118 IIQKVREAERDRQYLEF---KDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE--TI 171 + +++ E + + E+ + + GE+ G + ++E V+V +G +GVI + + Sbjct: 1 MFEELEELDWIKLLDEYDYARPQRGELREGMIMQIEDNGVLVSIGTKREGVIPSQDLRQM 60 Query: 172 SRE---NLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 E LR G+ ++ Y+ + E R ++LS T Sbjct: 61 GDEFLGTLRIGEMIQVYVQE--PENREGDLILSLT 93 >gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626] gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626] Length = 441 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G++++GTV ++E V++D+G S+GVI E E + GD +++ + + Sbjct: 33 EGDLVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSELVHMGDEIEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKEGRLVLS 101 >gi|189533893|ref|XP_691411.3| PREDICTED: helicase, POLQ-like [Danio rerio] Length = 1010 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + IE ++ A +I A+ L Sbjct: 930 LMEVSGVLEHRAKQLYSAGYKTLSHLANADPQTLVQTIENLFKKQAYQIIASAKMLLTEK 989 Query: 421 DITLQKKI 428 LQ+++ Sbjct: 990 AEALQEEV 997 >gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46] gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46] Length = 487 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|226306799|ref|YP_002766759.1| 30S ribosomal protein S1 [Rhodococcus erythropolis PR4] gi|226185916|dbj|BAH34020.1| probable 30S ribosomal protein S1 [Rhodococcus erythropolis PR4] Length = 495 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDAVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|156394395|ref|XP_001636811.1| predicted protein [Nematostella vectensis] gi|156223918|gb|EDO44748.1| predicted protein [Nematostella vectensis] Length = 771 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Query: 337 WTIDIITEEEDSINRQKDFNERTQF--FMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 WTI ++ E ++ R+ + + M+ V + A L G+ ++ +LA + + Sbjct: 670 WTIKLLLE---AMVRKLSYTTHLELIPLMEVAGVKQARARQLYKAGYRNLSDLAWAEPAV 726 Query: 395 IA-SIEGFDEETAVEIQGRAREYLEGIDITLQKKIREL 431 + IE ++ A +I A+ L L+++ +L Sbjct: 727 LVQQIEHLPKKHAQQIVSAAKMLLNEKADALREEAEDL 764 >gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum DSM 4184] gi|143811446|sp|Q9UWR5|RADA_PYRIL RecName: Full=DNA repair and recombination protein radA gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum DSM 4184] Length = 330 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 347 DSINRQKDFNERTQFFMQAINVDE------IIAHLLVAEGFADVEELACVKISEIASIEG 400 + + + ++V+E + L GF V ++A + E+A I G Sbjct: 3 SKKRKDAEVAQARVEITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG 62 Query: 401 FDEETAVEIQGRAREYL 417 +EE A +I AR+ L Sbjct: 63 -NEERAQQIVEAARKML 78 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 18/92 (19%) Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 D + + E+ ++ + G+ L E G T+ D+A SV +L N Sbjct: 6 RKDAEVAQARVEITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVGN-- 63 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 +++ + ++ AR +G Sbjct: 64 ----------------EERAQQIVEAARKMLG 79 >gi|325661147|ref|ZP_08149774.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085098|ref|ZP_08334184.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472654|gb|EGC75865.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407881|gb|EGG87371.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 360 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + + + ++D S G + + + R V ++ ++ + + Sbjct: 125 VVDEARVFIPASLVSDSYEKDLSKYEGQEIEFVISEFNPRRNRVIGDRRQLLVAEKAELQ 184 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDR 181 + + K VG+ + GTVK V +DLG DG++ E ++ + GD+ Sbjct: 185 KELFAKLK--VGDTVEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFQVGDQ 242 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQ 206 VK + D+ ++ LS P+ Sbjct: 243 VKVLVKDINDT----KIALSLKFPE 263 >gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1] Length = 500 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213] gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213] Length = 491 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|213692621|ref|YP_002323207.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 491 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|297198957|ref|ZP_06916354.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083] gi|197711117|gb|EDY55151.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083] Length = 503 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956] gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931] gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN] gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956] gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931] gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN] Length = 410 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + I+Q E + + E G+++ G V R+ Sbjct: 158 GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAA--GDVVEGKVARMTNFG 215 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG DG++ E + L G VK + +V E+ Sbjct: 216 AFIDLGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPER 261 >gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705] gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A] gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705] gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A] Length = 491 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1P [Intrasporangium calvum DSM 43043] gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043] Length = 493 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E ++ GD V++ + ++ Sbjct: 38 GDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVKVGDEVEALVL--QK 95 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 96 EDKEGRLILS 105 >gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a] gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a] Length = 518 Score = 43.1 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 74 GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVL--QK 131 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 132 EDKEGRLILS 141 >gi|229492760|ref|ZP_04386561.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121] gi|229320419|gb|EEN86239.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121] Length = 495 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDAVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] Length = 699 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + V T I+ RD Sbjct: 521 EVIEEALEQARQGRLAIMDHMLQTIDHPRKELSAYAPKVV-------TMHINPDKIRDVI 573 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G + + + Q +I + +E D +VG++ + Sbjct: 574 GPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMIDRAKEIIEDITRE---AEVGQVYN 630 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 VKR+E V+L + IS+E L GD ++ I ++ ++ R Sbjct: 631 AKVKRIEKYGAFVELFPGKDALLHISQISKERINKVEDVLNIGDSIEVKITEIDKQGR 688 >gi|38018106|gb|AAR08149.1| RAD51A [Zea mays] Length = 198 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E A +I A + Sbjct: 29 LQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEAASK 81 >gi|15806981|ref|NP_295706.1| 30S ribosomal protein S1 [Deinococcus radiodurans R1] gi|6459772|gb|AAF11535.1|AE002036_6 ribosomal protein S1, putative [Deinococcus radiodurans R1] Length = 629 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 29/121 (23%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRD---------ETISRENLRPGDRVKSYIYD 188 G+I+ GTV + + VD+G +GVI + E E +PGD +++Y+ Sbjct: 122 GDIVDGTVVFIGQEGIAVDIGAKVEGVIPLNQLGEEPVTLEQAQ-EMYKPGDAIEAYVVR 180 Query: 189 VRREQRGPQVLLSRTHPQFMV------------KLFHMEVPEIYNGIVQVKAVSRDPGSR 236 V Q++LS+ + + F +EV E G + V++ G R Sbjct: 181 VDLPNS--QIVLSKKRAEQDKGWRVLERMQEADEAFEVEVLEKVRGGL----VAQVEGIR 234 Query: 237 A 237 A Sbjct: 235 A 235 >gi|325104633|ref|YP_004274287.1| SSU ribosomal protein S1P [Pedobacter saltans DSM 12145] gi|324973481|gb|ADY52465.1| SSU ribosomal protein S1P [Pedobacter saltans DSM 12145] Length = 637 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 4/103 (3%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV-GEIISGTVKRVEYGNVIVDLG- 159 P DF A Q RE F GEII+GTV + +V++++G Sbjct: 49 DPADFDWDADDKVFGNYSQSEREKLEQLYAGTFNSVEKGEIIAGTVVTINNKDVVLNIGF 108 Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 SDG++ +E L+ GD V ++ R + G Q++LSR Sbjct: 109 KSDGLVPLNEFRDMPELKVGDVVDVFVEQ-REDANG-QLVLSR 149 Score = 37.0 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D I +G + + ++ V + +V+I+ E+++ Sbjct: 191 EAFLPGSQIDIKPIRDYD--IYVGKTMEFKVVKINHEFKNVVVSHKVLIEDDLESQKVEI 248 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ GTVK + V +DLG DG++ + +E L ++V Sbjct: 249 VSKLE--KGQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWGRIEHPKEVLSLDEKVNV 306 Query: 185 YIYDVRREQR 194 + D E++ Sbjct: 307 VVLDFDDEKK 316 >gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68] gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68] Length = 491 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|50746585|ref|XP_420565.1| PREDICTED: similar to DNA helicase HEL308 [Gallus gallus] Length = 1048 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + IE A ++ A+ L Sbjct: 970 LMEVAGVLEARAKQLYNAGYKTLAHLANANPETLVKTIEHLSRRQAKQMVSSAKMLLSEK 1029 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1030 AEALQEEVEEL 1040 >gi|162457755|ref|NP_001104918.1| DNA repair protein RAD51 homolog A [Zea mays] gi|55976364|sp|Q67EU8|R51A1_MAIZE RecName: Full=DNA repair protein RAD51 homolog A; AltName: Full=Rad51-like protein A; Short=RAD51A; AltName: Full=ZmRAD51a gi|4886752|gb|AAD32029.1|AF079428_1 RAD51 homolog RAD51A [Zea mays] Length = 340 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E A +I A + Sbjct: 29 LQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEAASK 81 >gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233] gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233] Length = 485 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 16/105 (15%) Query: 109 VAVQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSD 162 ++ +A QV I + AE D F D G+I+ GT+ +V+ V++D+G ++ Sbjct: 3 ISTVAAPQVAINDIGSAEDFLAAIDSTIKYFND--GDIVEGTIVKVDRDEVLLDIGYKTE 60 Query: 163 GVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 GVI E E + G+ V++ + ++E + +++LS Sbjct: 61 GVIPSRELSIKHDVDPSEVVEIGEHVEALVL--QKEDKEGRLILS 103 >gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 491 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2] Length = 498 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++ VI E E + GD +++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSIKHDVDPFEVVNVGDEIEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 671 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 RD + +G + + D + + +++ I +K E R + + G++I GT Sbjct: 413 QRDLNKFVGQDLECEIIDFDKAKRRIVLSRKNIEEKQFEDTRKEVFSKL--HEGDVIEGT 470 Query: 146 VKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 V+R+ VD+G DG+I E E + PG+ V+ I ++ E+ Sbjct: 471 VQRLTDFGAFVDVGGVDGLIHISEMSWNRIKHPSEVVAPGENVEVQILNLDEEKN 525 Score = 41.6 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 10/82 (12%) Query: 128 DRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + FK + GEI+ G V V ++V++G SDG++ R+E + +PG Sbjct: 278 EAIENSFKRVRRGEIVEGEVLYVTDNEIMVNIGYRSDGIVSREELSSNPDVKPSDLFKPG 337 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D ++ Y+ + V+LS Sbjct: 338 DTIQVYVIKIDDGDGN--VVLS 357 >gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis 157F] gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM 1217] gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8] gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM 1217] gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis 157F] Length = 491 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950] Length = 479 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99] gi|183982447|ref|YP_001850738.1| ribosomal protein S1 RpsA [Mycobacterium marinum M] gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99] gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M] Length = 481 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN] gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923] gi|13432211|sp|P46836|RS1_MYCLE RecName: Full=30S ribosomal protein S1 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae] gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923] Length = 481 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|20093551|ref|NP_613398.1| superfamily II helicase [Methanopyrus kandleri AV19] gi|19886395|gb|AAM01328.1| Predicted Superfamily II helicase [Methanopyrus kandleri AV19] Length = 711 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + V +A L G+ V +LA + E+ + G E+ A +I AR Sbjct: 654 LTEVEGVGRTLAMRLYRAGYHSVRDLAEATVPELTRVRGIGEQLARKILESAR 706 >gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum JDM301] gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 491 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|15678578|ref|NP_275693.1| DNA-dependent DNA polymerase family X protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2621626|gb|AAB85056.1| DNA-dependent DNA polymerase family X [Methanothermobacter thermautotrophicus str. Delta H] Length = 550 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 13/149 (8%) Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCS 439 D+EE+A + + G A +I E L + L +++ E + L S Sbjct: 41 EDIEEVA--ARGRLQELPGIGRNIAGKI----EEILSTGSLQLLERLSEEYPVDLDSLLS 94 Query: 440 IPGIDSKIKVALGEN-GIKTMEDLAGCSVDDLLGWSENKGGNIEKF---DGFLSSLGTPK 495 + G+ + L E GIKT+ DL + + G E + L+ + Sbjct: 95 VEGVGPRTVKLLYEELGIKTLADLEEQARRHRIRRLRGMGEKREAMILRNIELARSRISR 154 Query: 496 DQVESMI-IHARYKMGWIEKEKVADEEVQ 523 + ++ + +R K G +E E V EV Sbjct: 155 RPLAYVVPLASRIKAGLLELEGVQRVEVA 183 >gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805] gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805] Length = 430 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G++ V G V DL G I R + EN G + +V + Sbjct: 242 EKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHEALVGKTLGVAFLEVNPDT 301 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 302 R--KLVLSEKKAATAARFAELEVGQLVEGHV 330 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 GE+++GTV +E V VD+ G + G + + E T +E G ++ + Sbjct: 158 GEVVTGTVIGMESDGVYVDIGGKAPGFMPKSECGLGVITNLKERFPKGLEIQVLVTR 214 >gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736] gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736] Length = 497 Score = 43.1 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|291515307|emb|CBK64517.1| SSU ribosomal protein S1P [Alistipes shahii WAL 8301] Length = 611 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE++ GTV V VIV++G S+G+I E +L+ GD+++ Y+ + Sbjct: 45 VGEVVEGTVTGVNKREVIVNVGYKSEGIIPVSEFRYNPDLKVGDKIEVYVESAEDKNG-- 102 Query: 197 QVLLS 201 Q+ LS Sbjct: 103 QLALS 107 >gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5] gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5] Length = 315 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL- 417 + + + + L + G VE+L E+ + G D E A+ + AR Sbjct: 5 IEELGKEEGIGRVTISRLKSAGIETVEDLVLYNPEELEELAGIDFERALRLVRTARRLAG 64 Query: 418 -EGIDITLQKKIRELGVSEELCS-IPGIDSKIKVALGENGIKTME 460 E + + +L E L + + +D L E G+ T E Sbjct: 65 WEVRAVRGDEYASQLSQRESLTTGVKALDE-----LLEGGLVTQE 104 >gi|78222320|ref|YP_384067.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15] gi|78193575|gb|ABB31342.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15] Length = 401 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 16/135 (11%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPP-MDFGRVAVQSAKQVII--QKVREAERDRQY 131 QISL+ A +P+ +G + + + GR V S +Q++ Q+V+ Sbjct: 143 PFSQISLRRAE--NPAEFVGKHLLFKVTEYSERGRNIVLSHRQILEEEQRVKREALKEVL 200 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE----TIS--RENLRPGDRVKSY 185 G ++GTV R+ VDLG DG+I E + R+ L G++V Sbjct: 201 -----LEGMTVTGTVTRLADFGAFVDLGGVDGLIPVSEVGWTRVKHVRDVLSVGEQVSVV 255 Query: 186 IYDVRREQRGPQVLL 200 I + E + L Sbjct: 256 IKKIDWEAGKISLSL 270 >gi|282882121|ref|ZP_06290762.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus lacrimalis 315-B] gi|281298151|gb|EFA90606.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus lacrimalis 315-B] Length = 725 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 + + R V S K V+++++ E +R + + +G++I GTV+R+ Sbjct: 423 DDFQCEIIDFDKRKRRIVLSRKNVLMREL-EEKRSQIFESL--HIGDVIEGTVQRLTNFG 479 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VD+G DG++ E E + GD+VK + + E+ Sbjct: 480 AFVDIGGIDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEK 525 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 K GEI++G V V V+V+LG SDG+I ++E + + GD ++ ++ + Sbjct: 289 KKGEIVTGEVLYVTDNEVMVNLGYRSDGIISKEELSKNTDAKPSDLYKQGDEIEVFVLKM 348 Query: 190 RREQRGPQVLLS 201 V+LS Sbjct: 349 DDGDGN--VVLS 358 >gi|312198706|ref|YP_004018767.1| RNA binding S1 domain protein [Frankia sp. EuI1c] gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c] Length = 493 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 49 GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVL--QK 106 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 107 EDKEGRLILS 116 >gi|260436360|ref|ZP_05790330.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109] gi|260414234|gb|EEX07530.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109] Length = 390 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 DK G+++ V G V DL G I R + + EN + G + +V E Sbjct: 202 DKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQNGENHQEFVGKTLGVAFIEVNSET 261 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 262 R--KLVLSEKRAAVAERFQDLEVGQLVEGQV 290 Score = 37.4 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 GE+I GTV +E V VD+ G + G + + E T RE G V+ + Sbjct: 118 GEVIKGTVIGIESDGVYVDIGGKAPGYMPKSEAGLGVVTNFRERFPKGLEVEVLVTR 174 >gi|240168008|ref|ZP_04746667.1| 30S ribosomal protein S1 [Mycobacterium kansasii ATCC 12478] Length = 481 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|226360123|ref|YP_002777901.1| 30S ribosomal protein S1 [Rhodococcus opacus B4] gi|226238608|dbj|BAH48956.1| 30S ribosomal protein S1 [Rhodococcus opacus B4] Length = 494 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|302385380|ref|YP_003821202.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1] gi|302196008|gb|ADL03579.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1] Length = 366 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 20/154 (12%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-----PPMDFGRVAVQSAKQVII---Q 120 V +V + + ++ AR P+ + L ++F ++ II + Sbjct: 114 VAQVLDGGLSVVVEGARVFIPASLVSDTYEKDLSKYADKEIEFIITEFNPKRRRIIGDRK 173 Query: 121 KVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------IS 172 ++ A+R E D++ G+++ GT+K V +DLG +DG++ E Sbjct: 174 QIMVAKRAELQKELFDRIHTGDVVEGTIKNVTDFGAFIDLGGADGLLHISEMSWGRVESP 233 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + G+++K + D+ G ++ LS P+ Sbjct: 234 KKAFKAGEKIKVLVKDI----NGDKIALSLKFPE 263 >gi|194691108|gb|ACF79638.1| unknown [Zea mays] gi|195620070|gb|ACG31865.1| DNA repair protein RAD51 [Zea mays] Length = 340 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E A +I A + Sbjct: 29 LQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEAASK 81 >gi|169831339|ref|YP_001717321.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638183|gb|ACA59689.1| hydroxymethylbutenyl pyrophosphate reductase [Candidatus Desulforudis audaxviator MP104C] Length = 677 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 + G+I+ G + +V V+VD+G S+GV+ E E ++ GD + ++ V Sbjct: 319 RSGDIVRGVIVQVGQDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVGDEIDVWV--V 376 Query: 190 RREQRGPQVLLS 201 + E +++LS Sbjct: 377 KAEDNEGRIILS 388 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G+++ G V+R+ VD+G DG++ E E L+ GD ++ + + Sbjct: 492 QEGDVVKGVVRRLTQFGAFVDIGGLDGLLHISEISWHRINHPSEVLKVGDELEVQVLRID 551 Query: 191 REQ 193 RE Sbjct: 552 REN 554 >gi|111017993|ref|YP_700965.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1] gi|110817523|gb|ABG92807.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1] Length = 494 Score = 43.1 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|296140136|ref|YP_003647379.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162] gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162] Length = 499 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + Sbjct: 40 EGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVEALVL--T 97 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 98 KEDKEGRLILS 108 >gi|224282840|ref|ZP_03646162.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171] gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1P RpsA [Bifidobacterium bifidum PRL2010] gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171] gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010] gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171] Length = 490 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104] gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104] Length = 480 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|284991621|ref|YP_003410175.1| RNA binding S1 domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064866|gb|ADB75804.1| RNA binding S1 domain protein [Geodermatophilus obscurus DSM 43160] Length = 488 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 39 GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152] gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152] Length = 663 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 E A L GFA +EE+A + ++E + A + E+L + L +++ Sbjct: 501 SEGTAARLARAGFASLEEVADAGEERLVAVEDIGPKVAASLV----EHLTRLRPEL-ERL 555 Query: 429 RELGVSEELCS 439 RE GVS ++ Sbjct: 556 RERGVSLDVRE 566 >gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000] gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000] Length = 497 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97] gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97] gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172] Length = 481 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv] gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551] gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra] gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11] gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra] gi|215404070|ref|ZP_03416251.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 02_1987] gi|215411275|ref|ZP_03420083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 94_M4241A] gi|215426948|ref|ZP_03424867.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T92] gi|215430522|ref|ZP_03428441.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054] gi|215445812|ref|ZP_03432564.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T85] gi|218753336|ref|ZP_03532132.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis GM 1503] gi|219557550|ref|ZP_03536626.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T17] gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435] gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C] gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str. Haarlem] gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186578|ref|ZP_05764052.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CPHL_A] gi|260200691|ref|ZP_05768182.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T46] gi|260204899|ref|ZP_05772390.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis K85] gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46] gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A] gi|289554596|ref|ZP_06443806.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605] gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17] gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85] gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987] gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92] gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054] gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85] gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503] gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210] gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207] gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506] gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A] gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003] gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004] gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005] gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006] gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012] gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475] gi|6226090|sp|O06147|RS1_MYCTU RecName: Full=30S ribosomal protein S1 gi|2113914|emb|CAB08883.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium tuberculosis H37Rv] gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551] gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C] gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str. Haarlem] gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra] gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11] gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435] gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46] gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A] gi|289439228|gb|EFD21721.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605] gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85] gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17] gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987] gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92] gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054] gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503] gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85] gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A] gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003] gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004] gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005] gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006] gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012] gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A] gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148] gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207] Length = 481 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|310287294|ref|YP_003938552.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17] gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17] Length = 490 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653] gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653] Length = 502 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|395377|emb|CAA80878.1| RecA-like protein [Schizosaccharomyces pombe] Length = 358 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 + +++ EE+++ ++ + + G+ VE +A ++ Sbjct: 22 YDVNVQDEEDEAAAGPMPLQ-----MLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLL 76 Query: 397 SIEGFDEETAVEIQGRARE 415 I+G E A ++ G A + Sbjct: 77 LIKGISEAKADKLLGEASK 95 >gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] Length = 485 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 16/103 (15%) Query: 111 VQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGV 164 +A QV I + AE D F D G+I+ GTV +V++ V++D+G ++GV Sbjct: 3 TNNAPQVAINDIGSAEDFLAAIDATIKYFND--GDIVEGTVVKVDHDEVLLDIGYKTEGV 60 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 I E E ++ GD++ + + +E + +++LS Sbjct: 61 IPSRELSIKHDVDPDEVVQVGDQIDALVL--TKEDKEGRLILS 101 >gi|261749410|ref|YP_003257095.1| 30S ribosomal protein S1 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497502|gb|ACX83952.1| 30S ribosomal protein S1 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 606 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 8/124 (6%) Query: 82 KVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + + P + F ++ Q+ R+ + ++ Y E K+ E Sbjct: 6 EEIKKDTPHSSGNNENIGLKDQRKSFDWTKYETHLNSEQQEERK-KFEKIYAETLPKIQE 64 Query: 141 --IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 I GT+ + N+IVD+G ++G I E N + G++++ + V+ + +G Q Sbjct: 65 LEIYQGTITHITEKNLIVDIGFKAEGAIPISEFRENFNFKVGEKMEVMV--VKMDYKG-Q 121 Query: 198 VLLS 201 +LS Sbjct: 122 CILS 125 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E I++K RD D + V + + V S K +I + + E ++ Sbjct: 168 ECFLPGSHINVKPVRDYDTYVGKTMEVKV-VKINQKTKNVVVSHKILIERDIEEQRKEMI 226 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 K G+++ G +K + VDLG D ++ + E ++ +K Sbjct: 227 ---SKLDKGQVLEGKIKNILPYGAFVDLGGVDALLHITDMSWPHINHPTEVVQLEQELKF 283 Query: 185 YIYDVRREQRGPQV 198 + V +++ Q+ Sbjct: 284 VVLGVDKDKNRVQL 297 >gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152] gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152] Length = 487 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 35 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 92 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 93 EDKEGRLILS 102 >gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum] Length = 315 Score = 42.7 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + V + L GF V ++A + E+A I G +EE A +I AR+ L Sbjct: 11 ELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-NEERAQQIVEAARKML 63 >gi|114228441|gb|ABI58231.1| Rad51 protein [Oryza sativa Indica Group] Length = 332 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE + ++ I+G E +I A + Sbjct: 22 LQAPGIAAVDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIEAASK 74 >gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Spirochaeta coccoides DSM 17374] Length = 571 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 9/66 (13%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE--TISRENLRPGDRVKSYIYDVRREQRG 195 G +++GTV +V V VD+G S+G I DE I + G++VK +I + ++ +G Sbjct: 34 GTLVTGTVIQVNNEYVFVDVGYKSEGRIPLDEFDVIPED----GEKVKVFI--ITKDGKG 87 Query: 196 PQVLLS 201 Q+ +S Sbjct: 88 GQIQIS 93 >gi|310821587|ref|YP_003953945.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] gi|309394659|gb|ADO72118.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] Length = 571 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 10/120 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ R+ D I + + R + +++V+++K RE + Sbjct: 148 PGSQVDIRPVRNLDQYISK--EFEFKVIKFNKKRGNIVLSRRVLLEKQREEMKKETLKNL 205 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G ++ G VK + +DLG DG++ + E GD V+ + Sbjct: 206 K--EGAVLKGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRIGHPSEMFNVGDEVRVVVLK 263 >gi|115380643|ref|ZP_01467579.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] gi|115362348|gb|EAU61647.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] Length = 571 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 10/120 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ R+ D I + + R + +++V+++K RE + Sbjct: 148 PGSQVDIRPVRNLDQYISK--EFEFKVIKFNKKRGNIVLSRRVLLEKQREEMKKETLKNL 205 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G ++ G VK + +DLG DG++ + E GD V+ + Sbjct: 206 K--EGAVLKGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRIGHPSEMFNVGDEVRVVVLK 263 >gi|58579307|ref|YP_197519.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden] gi|58617361|ref|YP_196560.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel] gi|58416973|emb|CAI28086.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel] gi|58417933|emb|CAI27137.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden] Length = 567 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Query: 124 EAERDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR-- 177 + E EF D K G+II GT+ ++ G V +D G S+ +I E ++ + Sbjct: 43 DTEFQHALKEFMDSSVKEGQIIEGTIICIDKGYVTIDSGLKSESIISLKEFELGDDYQNI 102 Query: 178 -PGDRVKSYIYDVRREQRGPQVLLSR 202 G +VK Y+ + E R V+LSR Sbjct: 103 GVGSKVKLYLE--KMEGRNGSVVLSR 126 >gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 480 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|284044326|ref|YP_003394666.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684] gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684] Length = 529 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G++++G V R++ V+VD+G S+GVI +E ++ + G+ V + + + Sbjct: 40 EGDVVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKDEVEMGEEVDALVLT-K 98 Query: 191 REQRGPQVLLSRTHPQFMVK 210 +Q G +++LS+ +F Sbjct: 99 EDQDG-RLILSKKRARFEKA 117 >gi|239978882|ref|ZP_04701406.1| 30S ribosomal protein S1 [Streptomyces albus J1074] gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074] gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074] Length = 504 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|301620543|ref|XP_002939628.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Xenopus (Silurana) tropicalis] Length = 1005 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + IE A +I A+ + Sbjct: 927 LMEVAGVMEARAKQLYNAGYTSLAHLANADPEVMVKKIEHLSRHQAKQIVFSAKMLVNEK 986 Query: 421 DITLQKKIRELG 432 LQ+++ EL Sbjct: 987 AEALQEEVDELS 998 >gi|296109632|ref|YP_003616581.1| NusA family KH domain protein [Methanocaldococcus infernus ME] gi|295434446|gb|ADG13617.1| NusA family KH domain protein [Methanocaldococcus infernus ME] Length = 158 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GA +G G V+ + +K+DI+ +S D F+ N P + V + + Sbjct: 45 GAAIGKGGEHVKTAEEKF-GKKVDIIEYSDDWRKFIRNIFAPLQLEDVWIKRAGKDVIAY 103 Query: 312 VPKE-QLSLAI-GRRGQN 327 + ++ AI G +G+N Sbjct: 104 IRINPKIRRAIYGEKGKN 121 >gi|222612339|gb|EEE50471.1| hypothetical protein OsJ_30517 [Oryza sativa Japonica Group] Length = 341 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803] gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803] Length = 403 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G++ V G V DL G I R + EN G + +V E Sbjct: 215 EKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQLQEGENHEALVGKTLGVAFLEVNPET 274 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 275 R--KLVLSEKKAATAARFAELEVGQLVEGHV 303 Score = 37.7 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 G++++GTV +E V VD+ G + G + + E T +E G ++ + Sbjct: 131 GDVVTGTVIGMESDGVYVDIGGKAPGFMPKSECGLGVITNLKERFPKGLEIEVLVTR 187 >gi|94733801|emb|CAK05013.1| novel protein similar to vertebrate DNA helicase HEL308 (HEL308) [Danio rerio] Length = 710 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + IE ++ A +I A+ L Sbjct: 630 LMEVSGVLEHRAKQLYSAGYKTLSHLANADPQTLVQTIENLFKKQAYQIIASAKMLLTEK 689 Query: 421 DITLQKKI 428 LQ+++ Sbjct: 690 AEALQEEV 697 >gi|253578799|ref|ZP_04856070.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849742|gb|EES77701.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 358 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ-------- 120 V +V + +++ AR P+ + D + A Q + VI + Sbjct: 114 VTQVLDGGLCVNVDEARVFIPASLVSDTYE-----KDLSKYADQEIEFVITEFNPRRRRI 168 Query: 121 -----KVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 ++ AE+ + E +K VG+ + GTVK V +DLG +DG++ E Sbjct: 169 IGNRKQLLLAEKAEKQKELMEKIHVGDTVEGTVKNVTDFGAFIDLGGADGLLHISEMSWG 228 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ GD+VK I ++ G ++ LS P+ Sbjct: 229 RVENPKKVFTVGDKVKVLIKEI----NGEKIALSLKFPE 263 >gi|6730074|pdb|1B22|A Chain A, Rad51 (N-Terminal Domain) Length = 114 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILAEA 78 >gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032] gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032] gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032] gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032] Length = 486 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 16/103 (15%) Query: 111 VQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGV 164 +A QV I + AE D F D G+I+ GTV +V+ V++D+G ++GV Sbjct: 3 TNNAPQVAINDIGSAEDFLAAIDATIKYFND--GDIVEGTVVKVDRDEVLLDIGYKTEGV 60 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 I E E + GD++ + + +E + +++LS Sbjct: 61 IPSRELSIKHDVDPDEVVEVGDQIDALVL--TKEDKEGRLILS 101 >gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395] gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395] Length = 490 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|57239341|ref|YP_180477.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden] gi|57161420|emb|CAH58344.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden] Length = 565 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Query: 124 EAERDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR-- 177 + E EF D K G+II GT+ ++ G V +D G S+ +I E ++ + Sbjct: 41 DTEFQHALKEFMDSSVKEGQIIEGTIICIDKGYVTIDSGLKSESIISLKEFELGDDYQNI 100 Query: 178 -PGDRVKSYIYDVRREQRGPQVLLSR 202 G +VK Y+ + E R V+LSR Sbjct: 101 GVGSKVKLYLE--KMEGRNGSVVLSR 124 >gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)] gi|256788388|ref|ZP_05526819.1| 30S ribosomal protein S1 [Streptomyces lividans TK24] gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24] gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)] gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24] Length = 502 Score = 42.7 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14] gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14] Length = 496 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|294012140|ref|YP_003545600.1| ribosomal protein S1 [Sphingobium japonicum UT26S] gi|292675470|dbj|BAI96988.1| ribosomal protein S1 [Sphingobium japonicum UT26S] Length = 570 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 16/156 (10%) Query: 47 SDIRVE---INPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP 103 + RVE G ++ V Q+ ++ RD P +DI + Sbjct: 112 ENARVEGVIFGRVKGGFTVDLDGAVA---FLPGSQVDIRPVRDVTPLMDIPQP--FQILK 166 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 MD R + +++ I+++ R +R G+II G VK + VDLG DG Sbjct: 167 MDRRRGNIVVSRRAILEETRAEQRSGLIQTLA--EGQIIEGVVKNITDYGAFVDLGGIDG 224 Query: 164 VIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 ++ + E + GD V+ I + R+ Sbjct: 225 LLHVTDLSYKRINHPNEMINIGDTVRVQIIRINRDT 260 Score = 37.7 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISRE--NLRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E + L+ GD V+ Y+ V Sbjct: 28 EGRVVKGTVTGIENDMALIDVGLKSEGRVPLREFAAPGQKAELKVGDEVEVYVDRVENAH 87 Query: 194 RGPQVLLS--RTHPQFMVKLFHMEVPE 218 +LS R + E E Sbjct: 88 GEA--MLSRDRARREAAWDKLESEFTE 112 >gi|147677954|ref|YP_001212169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Pelotomaculum thermopropionicum SI] gi|146274051|dbj|BAF59800.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 667 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 + G+I+ GTV V V+VD+G S+GVI E +E ++ GD ++ Y+ Sbjct: 297 RHGQIVKGTVVHVGPDEVMVDIGAKSEGVIPLRELSCCEIASPQEIVKVGDEIEVYVLKA 356 Query: 190 RREQRGPQVLLS 201 + +++LS Sbjct: 357 EDNEG--KLILS 366 Score = 37.7 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G+++ GTV+R+ VD+G DG++ E E ++ GD ++ + + Sbjct: 470 QEGQVVKGTVRRLTQFGAFVDIGGVDGLLHISEMSWHRINHPSEVVKVGDELEIMVLKLD 529 Query: 191 REQ 193 RE Sbjct: 530 REN 532 >gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM 44985] gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985] Length = 482 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGT+ +VE V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVSGTIVKVERDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDVVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50] gi|156865623|gb|EDO59054.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50] Length = 650 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 78/182 (42%), Gaps = 22/182 (12%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS--------LKVARD 86 + + + + + ++E GDI ++++VV N + + + + Sbjct: 369 VALSYKRVAAEKVNEKLEEAFNNGDILTGKVVQVVNGGLNVLYEETRIFIPASLVSDLYE 428 Query: 87 RDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 ++ + + L + R + + K++I+++ + A + + + VG + GT Sbjct: 429 KNLDKYLDQDIEFQLTEFNPKKRRIIGNRKKLIVER-KAAAAKELFEKIE--VGMTVEGT 485 Query: 146 VKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVL 199 VK V +DLG +DG++ E ++ + GD VK++I D+ G ++ Sbjct: 486 VKNVTDFGAFIDLGGADGLLHISEMSWGRVESPKKMFKVGDTVKAFIKDI----NGDKIA 541 Query: 200 LS 201 LS Sbjct: 542 LS 543 >gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940] gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940] Length = 486 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD++ + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S] gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S] Length = 490 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045] gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045] Length = 499 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM 16992] gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|126723348|ref|NP_001075493.1| DNA repair protein RAD51 homolog 1 [Oryctolagus cuniculus] gi|6225914|sp|O77507|RAD51_RABIT RecName: Full=DNA repair protein RAD51 homolog 1 gi|3387769|gb|AAC28561.1| Rad51 [Oryctolagus cuniculus] Length = 339 Score = 42.7 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF E +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPVSRLEQCGINANDVKKLEEAGFHTEEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQGRA 413 +I A Sbjct: 72 DKILTEA 78 >gi|315224362|ref|ZP_07866196.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287] gi|314945752|gb|EFS97767.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287] Length = 586 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-N 160 +F Q + + + + F D + E++ G V R+ I+D+ Sbjct: 12 LQNFDWDKYQEGIDSVQEDQLKNFEELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAK 71 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 S+GVI +E NL+ GD+V+ I D+R ++ G Q++LS Sbjct: 72 SEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNG-QLVLS 110 Score = 36.6 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD + ++ +F V V K +I + E +++ Sbjct: 153 EAFLPGSQIDVKPIRDYEQFVNKTMEFKIVKVNHEFKNVVVSH-KALIEADIEEQKKEII 211 Query: 131 YLEFKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVK 183 G+++ G VK + V VDLG DG+I + E + ++ Sbjct: 212 ----SQLEKGQVLEGVVKNITSYGVFVDLGGVDGLIHITDLSWARINHPSEVVSVDQKLN 267 Query: 184 SYIYDVRREQRGPQV 198 I D + Q+ Sbjct: 268 VVILDFDDNKSRIQL 282 >gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703] gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis L2-32] gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703] gi|154084010|gb|EDN83055.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis L2-32] Length = 490 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|326427949|gb|EGD73519.1| rad51 protein [Salpingoeca sp. ATCC 50818] Length = 332 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 L G+ VE +A V ++ ++G E A +I A + L Sbjct: 34 LTDAGYHTVESVAYVPKKQLLGVKGISEAKADKIINEASKLL 75 >gi|332020430|gb|EGI60850.1| DNA repair protein RAD51-like protein 1 [Acromyrmex echinatior] Length = 340 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ + L G+ VE +A ++ I+G E A ++Q A + Sbjct: 28 LEKNGITAGDIKKLQDAGYYTVEAVAYATKKDLLVIKGISEAKADKLQLEASK 80 >gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 491 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC 27678] gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1] gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679] gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022] gi|171278819|gb|EDT46480.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC 27678] gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1] gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679] gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022] Length = 490 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX] gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX] Length = 485 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 38 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVL--QK 95 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 96 EDKEGRLILS 105 >gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec] gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec] Length = 493 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 49 GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVL--QK 106 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 107 EDKEGRLILS 116 >gi|330752286|emb|CBL87241.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] Length = 740 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 19/162 (11%) Query: 53 INPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 +N E ++ + V EV + P G + D P F Sbjct: 1 MNTEDKNLESTQEETVATEVVDTPT-----------PEAHEGPDLLDQTPYDQFDWSVGN 49 Query: 113 SAKQVIIQKVREAERD-RQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRD 168 K + +E E QY + +G EI+ G V + G+V++D+ SDG++ Sbjct: 50 --KHTLSYSEQEIEDYLNQYEQSLSTIGQNEIVLGKVTAIHDGDVVLDVNYKSDGLVSLS 107 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 E +L+ GD V+ Y+ D + + RG Q++LSR + + Sbjct: 108 EFRDMPDLKIGDEVQVYVED-KEDLRG-QLVLSRKKAKLLKA 147 >gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716] Length = 410 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + I+Q E + + E G+++ G V R+ Sbjct: 158 GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELVA--GDVVEGKVARMTNFG 215 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG DG++ E + L G VK + +V E+ Sbjct: 216 AFIDLGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPER 261 >gi|300779764|ref|ZP_07089620.1| chaperonin GroEL [Corynebacterium genitalium ATCC 33030] gi|300533874|gb|EFK54933.1| chaperonin GroEL [Corynebacterium genitalium ATCC 33030] Length = 535 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 14/135 (10%) Query: 371 IIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 ++A LV EG +V A E+ I E+ E++ RA + +I + Sbjct: 93 LLAQALVNEGLRNVA--AGANPIELNKGISAATEKVVEELKARATDVSSSEEIANVATVS 150 Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 + + S +G++G+ T+E+ S+D + +E GFLS Sbjct: 151 SRDPE-----VGEMVSGAMDKVGKDGVLTVEE--SQSIDSYVDVTEGISFEK----GFLS 199 Query: 490 SLGTPKDQVESMIIH 504 + ++ Sbjct: 200 PYFMTDPEAGQAVLE 214 >gi|239931899|ref|ZP_04688852.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672] gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672] gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672] Length = 497 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 39 GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|256818976|ref|YP_003140255.1| 30S ribosomal protein S1 [Capnocytophaga ochracea DSM 7271] gi|256580559|gb|ACU91694.1| RNA binding S1 domain protein [Capnocytophaga ochracea DSM 7271] Length = 586 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-N 160 +F Q + + + + F D + E++ G V R+ I+D+ Sbjct: 12 LQNFDWDKYQEGIDSVQEDQLKNFEELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAK 71 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 S+GVI +E NL+ GD+V+ I D+R ++ G Q++LS Sbjct: 72 SEGVISLNEFRYNPNLKVGDKVEVLI-DIREDKNG-QLVLS 110 Score = 36.6 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD + ++ +F V V K +I + E +++ Sbjct: 153 EAFLPGSQIDVKPIRDYEQFVNKTMEFKIVKVNHEFKNVVVSH-KALIEADIEEQKKEII 211 Query: 131 YLEFKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVK 183 G+++ G VK + V VDLG DG+I + E + ++ Sbjct: 212 ----SQLEKGQVLEGVVKNITSYGVFVDLGGVDGLIHITDLSWARINHPSEVVSVDQKLN 267 Query: 184 SYIYDVRREQRGPQV 198 I D + Q+ Sbjct: 268 VVILDFDDNKSRIQL 282 >gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129] gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae] Length = 486 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD++ + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|548664|sp|P36601|RAD51_SCHPO RecName: Full=DNA repair protein rhp51; AltName: Full=RAD51 homolog gi|297522|emb|CAA80399.1| Rec A-like Protein [Schizosaccharomyces pombe] gi|395378|emb|CAA80879.1| Rad51-like protein [Schizosaccharomyces pombe] Length = 365 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 + +++ EE+++ ++ + + G+ VE +A ++ Sbjct: 29 YDVNVQDEEDEAAAGPMPLQ-----MLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLL 83 Query: 397 SIEGFDEETAVEIQGRARE 415 I+G E A ++ G A + Sbjct: 84 LIKGISEAKADKLLGEASK 102 >gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1] gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1] Length = 481 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|109947059|ref|YP_664287.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba] gi|109714280|emb|CAJ99288.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba] Length = 552 Score = 42.7 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 22/174 (12%) Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPS- 90 ++++K + V IN G + ++ V + E +++L +D Sbjct: 24 EEALEKGTIK-----EGLIVSINENDG----YAMVSVGGKTE---GRLALSEIKDEKGQL 71 Query: 91 -IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 + + R +V K + QKV+ + E + II G + Sbjct: 72 LYQKNDPIVVHV-SERGERPSVSYKKAISQQKVQAKIEE--LGE--NYENAIIEGKIVGK 126 Query: 150 EYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 G IV+ + + R + + + G +K+ I V +E + +SR Sbjct: 127 NKGGYIVESQGVEYFLSRSHSSLKNDANHIGKCIKACIIRVDKENH--SINISR 178 >gi|19114794|ref|NP_593882.1| recombinase Rhp51 [Schizosaccharomyces pombe 972h-] gi|397843|dbj|BAA02963.1| SpRad51 [Schizosaccharomyces pombe] gi|7708593|emb|CAB90141.1| recombinase Rhp51 [Schizosaccharomyces pombe] Length = 365 Score = 42.7 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 + +++ EE+++ ++ + + G+ VE +A ++ Sbjct: 29 YDVNVQDEEDEAAAGPMPLQ-----MLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLL 83 Query: 397 SIEGFDEETAVEIQGRARE 415 I+G E A ++ G A + Sbjct: 84 LIKGISEAKADKLLGEASK 102 >gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1] Length = 498 Score = 42.7 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+SGTV +V+ V++D+G ++GVI E E + GD ++ + ++ Sbjct: 53 GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEFEALVQ--QK 110 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 111 EDKEGRLILS 120 >gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R] gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R] Length = 486 Score = 42.7 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%) Query: 111 VQSAKQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGV 164 +A QV I + AE D F D G+I+ G V +V+ V++D+G ++GV Sbjct: 3 TNNAPQVAINDIGSAEDFLAAIDATIKYFND--GDIVEGIVVKVDRDEVLLDIGYKTEGV 60 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 I E E + GD++ + + +E + +++LS Sbjct: 61 IPSRELSIKHDVDPDEVVEVGDQIDALVL--TKEDKEGRLILS 101 >gi|58581803|ref|YP_200819.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623707|ref|YP_451079.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576640|ref|YP_001913569.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426397|gb|AAW75434.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367647|dbj|BAE68805.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521092|gb|ACD59037.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 561 Score = 42.7 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|330996791|ref|ZP_08320663.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841] gi|329572513|gb|EGG54164.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841] Length = 597 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLG 159 P DF A +S ++ + REA+ Y +KV E++ GTV + V+V++G Sbjct: 9 PLADFDWNAYESG-DTLVNESREAQEKA-YEGSLNKVNDHEVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I E +L+ GD+V+ YI +E + Q++LS Sbjct: 67 FKSDGIIPMSEFRYNPDLKVGDKVEVYIE--NQEDKKGQLILS 107 Score = 37.7 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 18/134 (13%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK--VREAERD 128 E QI +K RD D + +G + + ++ Q K V++ + EAE + Sbjct: 150 EAFLPGSQIDVKPIRDYD--VFVGKTMEFKVVKIN------QEFKNVVVSHKALIEAELE 201 Query: 129 RQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 +Q E K G+++ GTVK + V +DLG DG+I + +E ++ Sbjct: 202 QQKKEIISKLEKGQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWGRVSDPKEVVQLDQ 261 Query: 181 RVKSYIYDVRREQR 194 ++ I D E++ Sbjct: 262 KINVVILDFDDEKK 275 >gi|320170723|gb|EFW47622.1| Rad51 protein [Capsaspora owczarzaki ATCC 30864] Length = 337 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 32/73 (43%) Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 ++++EE++ + ++ ++ + L+ G+ VE + + +++G Sbjct: 4 MVSQEEEAYSGEEAMGPMLVSRLEQHGISAADTKKLMEAGYNTVESVVYTPRKTLLTVKG 63 Query: 401 FDEETAVEIQGRA 413 E A +I G A Sbjct: 64 ISEAKADKIIGEA 76 >gi|182419749|ref|ZP_02950989.1| putative 30S ribosomal protein [Clostridium butyricum 5521] gi|237666935|ref|ZP_04526920.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376297|gb|EDT73879.1| putative 30S ribosomal protein [Clostridium butyricum 5521] gi|237658134|gb|EEP55689.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 383 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + +D + ++++VI ++ + + + GE +G VK++ Sbjct: 153 VGKEIDVKITELDLNNNKIVASRRVIEEEEYNKNKKVIWNSL--QEGEKRTGVVKKLVKF 210 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 VD+G +G+I + E ++ GD+V+ +I V +E+ ++L Sbjct: 211 GAFVDIGGVEGLIHLSDLSWERVNKPEEIVKEGDKVEVFIGSVDKEKERLSLIL----KD 266 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSR 231 + + + EI G V V R Sbjct: 267 IAKEPWSVHSGEINEGDVIEGKVVR 291 >gi|305663856|ref|YP_003860144.1| DNA repair and recombination protein RadA [Ignisphaera aggregans DSM 17230] gi|304378425|gb|ADM28264.1| DNA repair and recombination protein RadA [Ignisphaera aggregans DSM 17230] Length = 316 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL---EG 419 ++ + + I L G VE LA E++ +T + +AR L Sbjct: 9 LEELGISSTILKKLQEMGITTVEALAAANAQELSQNLAIPLQTVQRLISQARNALGLGLK 68 Query: 420 IDITLQKKIREL 431 + ++K+ L Sbjct: 69 TALEIKKERMSL 80 >gi|254172045|ref|ZP_04878721.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4] gi|214033941|gb|EEB74767.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4] Length = 720 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ N+ A L GF +VE +A K +E+ +EG + I YL Sbjct: 647 LVKLPNIGRKRARALYNAGFKNVEAIANAKPAELLEVEGIGAKILDGIYR----YLGIEK 702 Query: 422 ITLQKKIRELGVSEELC 438 ++K + G E+ Sbjct: 703 RVAEEKPKRKGTLEDFL 719 >gi|190347494|gb|EDK39771.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 333 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +T+E D+ + ++ ++ + + L +EGF +E +A + ++G Sbjct: 1 MTQEADNDSGPLSIDQ-----LEGNGITMSDINKLKSEGFHTIESIAYTPKKALLQVKGI 55 Query: 402 DEETAVEIQGRAREYL 417 E A I A + + Sbjct: 56 SETKADRISAEAAKVV 71 >gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109] gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109] Length = 486 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V++ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS] gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS] gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS] gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS] gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS] gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS] Length = 479 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|304393050|ref|ZP_07374979.1| ribosomal protein S1 [Ahrensia sp. R2A130] gi|303294815|gb|EFL89186.1| ribosomal protein S1 [Ahrensia sp. R2A130] Length = 567 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 14/160 (8%) Query: 41 SLYGTMSDIRVEI-NPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD 99 + + +I N G ++ Q+ ++ RD P ++ Sbjct: 106 KKFEAEEKVEGQIFNQVKGGFTV---DLDGATAFLPRSQVDIRPVRDVTPLMNTPQP--F 160 Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 + MD R + +++ I+++ R +R + G+I+ G VK + VDLG Sbjct: 161 QILKMDRRRGNIVVSRRAILEETRAEQRSEIVQNLE--EGQIVEGVVKNITDYGAFVDLG 218 Query: 160 NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 DG++ + E L+ G+ VK I V +E Sbjct: 219 GIDGLLHVTDMAWRRVNHPTEILQIGETVKVQIIRVNQET 258 >gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304] gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304] Length = 494 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +++ V++D+G ++GVI E + ++ GD +++ + V + Sbjct: 36 GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKDGRLILSKKRAQYERAWGDVEKIKEADGVVE 127 >gi|146417037|ref|XP_001484488.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 333 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +T+E D+ + ++ ++ + + L +EGF +E +A + ++G Sbjct: 1 MTQEADNDSGPLSIDQ-----LEGNGITMSDINKLKSEGFHTIESIAYTPKKALLQVKGI 55 Query: 402 DEETAVEIQGRAREYL 417 E A I A + + Sbjct: 56 SETKADRISAEAAKVV 71 >gi|296426052|ref|XP_002842550.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638822|emb|CAZ80285.1| unnamed protein product [Tuber melanosporum] Length = 265 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 342 ITEEEDSINRQKDFNERTQ-----------FFMQAINVDEIIAHLLVAEGFADVEELACV 390 ++ EE + F++++ ++ + +V G+ VE +A Sbjct: 1 MSAEEVAQEGGSQFDDQSTQIGGPGAPTPLSALEGNGISARDIKAVVEAGYNTVEAVAYT 60 Query: 391 KISEIASIEGFDEETAVEIQGRA 413 + I+G E A ++ A Sbjct: 61 PKRALLVIKGISEAKADKLIAEA 83 >gi|78048052|ref|YP_364227.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036482|emb|CAJ24173.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 561 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus] Length = 712 Score = 42.4 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + A LLV FA ++ELA I E+A++EG TA I A + + L ++ Sbjct: 561 VGKTTAELLVQR-FASIDELAAATIDELAALEGVGPITAESI---ANWFRVEDNRRLIEE 616 Query: 428 IRELGV 433 ++ELGV Sbjct: 617 LKELGV 622 >gi|323309417|gb|EGA62634.1| Rad51p [Saccharomyces cerevisiae FostersO] Length = 400 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEI-IAHL--LVAEGFADVEELACVKISEIASIEGFD 402 E + + ++ + V+ I +A + L G E +A ++ I+G Sbjct: 66 EMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGIS 125 Query: 403 EETAVEIQGRA 413 E A ++ A Sbjct: 126 EAKADKLLNEA 136 >gi|321471848|gb|EFX82820.1| hypothetical protein DAPPUDRAFT_299714 [Daphnia pulex] Length = 341 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ + L G+ VE +A V + +I+G E A +I A++ Sbjct: 30 LEGNGISGADIKKLQEAGYHTVESVAYVPKKTLITIKGVSEAKADKIIAEAQK 82 >gi|307292731|ref|ZP_07572577.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1] gi|306880797|gb|EFN12013.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1] Length = 570 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 16/156 (10%) Query: 47 SDIRVE---INPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP 103 + RVE G ++ V Q+ ++ RD P +DI + Sbjct: 112 ENARVEGVIFGRVKGGFTVDLDGAVA---FLPGSQVDIRPVRDVTPLMDIPQP--FQILK 166 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 MD R + +++ I+++ R +R G+II G VK + VDLG DG Sbjct: 167 MDRRRGNIVVSRRAILEETRAEQRSGLIQTLA--EGQIIEGVVKNITDYGAFVDLGGIDG 224 Query: 164 VIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 ++ + E + GD V+ I + R+ Sbjct: 225 LLHVTDLSYKRINHPNEMINIGDTVRVQIIRINRDT 260 Score = 37.4 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISREN--LRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E + L+ GD V+ Y+ V Sbjct: 28 EGRVVKGTVTGIENDMALIDVGLKSEGRVPLREFAAPGQKADLKVGDEVEVYVDRVENAH 87 Query: 194 RGPQVLLS--RTHPQFMVKLFHMEVPE 218 +LS R + E E Sbjct: 88 GEA--MLSRDRARREAAWDKLESEFTE 112 >gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] Length = 712 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + A LLV FA ++ELA I E+A++EG TA I A + + L ++ Sbjct: 561 VGKTTAELLVQR-FASIDELAAATIDELAALEGVGPITAESI---ANWFRVEDNRRLIEE 616 Query: 428 IRELGV 433 ++ELGV Sbjct: 617 LKELGV 622 >gi|166712378|ref|ZP_02243585.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 561 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|154502539|ref|ZP_02039599.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149] gi|153796935|gb|EDN79355.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149] Length = 358 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 12/132 (9%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + + ++D S G + + + R V ++ ++ R ++ + + +VG+ Sbjct: 138 VSDSYEKDLSKYEGQEIEFVISEFNPRRNRVIGDRRQLLVAERAEKQKELFAKL--QVGD 195 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 + GTVK V +DLG DG++ E ++ + GD+VK + D+ Sbjct: 196 TVEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDINDT-- 253 Query: 195 GPQVLLSRTHPQ 206 ++ LS P+ Sbjct: 254 --KIALSLKFPE 263 >gi|325915995|ref|ZP_08178288.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937] gi|325537805|gb|EGD09508.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937] Length = 562 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2] gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2] Length = 543 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 10/106 (9%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + + V +++G V + V+L +G + E E L+ G Sbjct: 349 WENIEDRYN--VNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIG 406 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVK-LFHMEVPEIYNGIV 224 ++VK I + +E R + + RT + L +E I +G + Sbjct: 407 EKVKVKILKIDKENRKITLSIKRTQENPWERALKELETDSIVSGTI 452 >gi|311262877|ref|XP_003129397.1| PREDICTED: helicase POLQ-like [Sus scrofa] Length = 1119 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A +I A+ L Sbjct: 1031 LMEVAGVLEGRAKQLYNAGYKSLAHLANADPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 1090 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1091 AEALQEEVEEL 1101 >gi|293374966|ref|ZP_06621261.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909] gi|325843363|ref|ZP_08167946.1| putative ribosomal protein S1 [Turicibacter sp. HGF1] gi|292646376|gb|EFF64391.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909] gi|325489392|gb|EGC91765.1| putative ribosomal protein S1 [Turicibacter sp. HGF1] Length = 559 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 11/72 (15%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDET------ISRENLRPGDRVKSYIYDVR 190 V +I+ G V RV V VD+G ++G I +E +++ ++ GD +K+ V Sbjct: 28 VNDIVEGVVVRVSNQEVTVDIGGATEGTIYLNELTLDKVESAKDVVKVGDTIKAMAKKVD 87 Query: 191 REQRGPQVLLSR 202 E Q+LLSR Sbjct: 88 DE----QILLSR 95 >gi|282880197|ref|ZP_06288916.1| 30S ribosomal protein S1 [Prevotella timonensis CRIS 5C-B1] gi|281305917|gb|EFA97958.1| 30S ribosomal protein S1 [Prevotella timonensis CRIS 5C-B1] Length = 591 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Query: 128 DRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 + Y E +K ++ GTV ++ VIV++G SDG+I E +L+ GD+V+ Sbjct: 32 AKMYDETLNKVSEHQVTEGTVISIDKKEVIVNIGYKSDGIIPASEFRYNPDLKIGDKVEV 91 Query: 185 YIYDVRREQRGPQVLLS 201 Y+ +E R Q++LS Sbjct: 92 YVE--NQEDRKGQLVLS 106 >gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975] gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975] gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975] Length = 486 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD + + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|332702711|ref|ZP_08422799.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay] gi|332552860|gb|EGJ49904.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay] Length = 590 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 D +G + ++ R V +++V++++ RE R G++++G VK Sbjct: 166 DMDALVGKDYEFRVLKINRRRSNVIVSRRVLLEEQREHMRKELLETLS--EGQVVTGKVK 223 Query: 148 RVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 + V VDLG DG++ + +E + GD ++ + ++ + + Sbjct: 224 NITEYGVFVDLGGLDGLLHITDMSWRRIRHPKEMVGLGDELELKVLSFDKDNKKVSL 280 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE---TISRENLRPGDRVKSYIYDVRREQR 194 G I+SG V +++ +V+VD+ S+G + E + ++ GD+V ++ VR+++ Sbjct: 44 GNIVSGEVVKIDTDHVLVDVNFKSEGQLPIGEFTDSNGNVTVKVGDKVDVFV--VRKDEV 101 Query: 195 GPQVLLSR 202 ++LSR Sbjct: 102 EGTIVLSR 109 >gi|21243033|ref|NP_642615.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str. 306] gi|289665787|ref|ZP_06487368.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671206|ref|ZP_06492281.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294624737|ref|ZP_06703403.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664331|ref|ZP_06729696.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325925941|ref|ZP_08187309.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118] gi|21108543|gb|AAM37151.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str. 306] gi|292600971|gb|EFF45042.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605897|gb|EFF49183.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325543664|gb|EGD15079.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118] Length = 561 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41] gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41] gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231] gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002] gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19] Length = 487 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD++ + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|294979775|pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant Length = 400 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEI-IAHL--LVAEGFADVEELACVKISEIASIEGFD 402 E + + ++ + V+ I +A + L G E +A ++ I+G Sbjct: 66 EMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGIS 125 Query: 403 EETAVEIQGRA 413 E A ++ A Sbjct: 126 EAKADKLLNEA 136 >gi|291550296|emb|CBL26558.1| Ribosomal protein S1 [Ruminococcus torques L2-14] Length = 358 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 12/146 (8%) Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V+EV + + + ++D S G + + + R V ++ ++ R + Sbjct: 124 TTVDEVRVFIPASLVSDSYEKDLSKYEGQEIEFVISEFNPRRNRVIGDRRQLLVAERAEK 183 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 + + + VG+ + GTVK V VDLG DG++ E ++ GD Sbjct: 184 QKELFAKLN--VGDTVEGTVKNVTDFGAFVDLGGVDGLLHISEMSWGRVDNPKKVFHVGD 241 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQ 206 +K + D+ ++ LS P+ Sbjct: 242 TLKVLVKDIHDT----KIALSLKFPE 263 >gi|257053513|ref|YP_003131346.1| PHP domain protein [Halorhabdus utahensis DSM 12940] gi|256692276|gb|ACV12613.1| PHP domain protein [Halorhabdus utahensis DSM 12940] Length = 580 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Query: 352 QKDFNERTQFFMQAINVDEII--------AHLLVAEGFADVEELACVKISEIASIEGFDE 403 + R + F ++ ++ A VAE DV +LA + + I+ E Sbjct: 4 NAELAARLEEFADLLDAKDVEYKPRAYRRAAENVAEYPGDVVDLAEDGVEAVQEIDRVGE 63 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIR-ELGVS-EELCSIPGIDSKIKVALGEN-GIKTME 460 A ++ EY+E I + +R EL V + L S+ G+ K L E GI+T++ Sbjct: 64 AIADKLV----EYVETGAIEELEDLRAELPVEMDALTSVEGVGPKTVGTLYEALGIQTLD 119 Query: 461 DLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVE-SMIIHARYKMGWIEKEKVAD 519 DL + + G + L + ++ E ++ AR + + + A Sbjct: 120 DLE--AAAEAGEIQNVSGFGAKTEQNILDGIDFAREAHERQLLGEARPRGERVREYLRAV 177 Query: 520 EEVQD 524 E VQ Sbjct: 178 EAVQQ 182 >gi|151944813|gb|EDN63072.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789] gi|256271447|gb|EEU06501.1| Rad51p [Saccharomyces cerevisiae JAY291] gi|323305264|gb|EGA59011.1| Rad51p [Saccharomyces cerevisiae FostersB] Length = 400 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEI-IAHL--LVAEGFADVEELACVKISEIASIEGFD 402 E + + ++ + V+ I +A + L G E +A ++ I+G Sbjct: 66 EMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGIS 125 Query: 403 EETAVEIQGRA 413 E A ++ A Sbjct: 126 EAKADKLLNEA 136 >gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila RKU-1] gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1] Length = 543 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 14/115 (12%) Query: 99 DPLPPMDFGRVA---VQSAKQVIIQKVREAERDRQYLEF--KDKVGEIISGTVKRVEYGN 153 DP+P + + VQ+ + I R A +DR+ EF + KVG+II GTVK + Sbjct: 141 DPIPEKEIEVIILEMVQTKRGSRIVVSRRALQDRKIEEFFSEKKVGDIIEGTVKGISNAG 200 Query: 154 VIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 V V++ G I + E + ++PG + + I ++ ++ V+LS Sbjct: 201 VEVEISEGIRGFIPKSELSYDNRISPEDVVKPGQNITAKIIELDERKKN--VILS 253 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 10/107 (9%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + + V +++G V + V+L +G + E E L+ G Sbjct: 349 WENIEDRYN--VNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIG 406 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE-IYNGIVQ 225 ++VK I + +E R + + RT + P+ I G ++ Sbjct: 407 EKVKVKILKIDKENRKITLSIRRTQENPWERALKELKPDSIVRGTIE 453 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 127 RDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISR-ENLRPGDR 181 D +++ + G+I++G V E G V+VD G S+G + +E I + + G+ Sbjct: 7 NDEILSQYEPEEFRRGQIVTGVVIGKEDGGVVVDFGGKSEGFVPENELIKSLDEYKVGEN 66 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 + I ++ E+R +LS P L + Sbjct: 67 LTLQILNLNYEERS---ILSERRPVLRKTLEEL 96 >gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155] gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155] Length = 479 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|6320942|ref|NP_011021.1| Rad51p [Saccharomyces cerevisiae S288c] gi|131783|sp|P25454|RAD51_YEAST RecName: Full=DNA repair protein RAD51 gi|4275|emb|CAA45563.1| RAD51 [Saccharomyces cerevisiae] gi|172339|gb|AAA34948.1| RAD51 protein [Saccharomyces cerevisiae] gi|218469|dbj|BAA00913.1| Rad51 protein [Saccharomyces cerevisiae] gi|603333|gb|AAB64650.1| Rad51p: RecA-like protein [Saccharomyces cerevisiae] gi|190405660|gb|EDV08927.1| DNA repair protein RAD51 [Saccharomyces cerevisiae RM11-1a] gi|207345902|gb|EDZ72571.1| YER095Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259146020|emb|CAY79280.1| Rad51p [Saccharomyces cerevisiae EC1118] gi|285811729|tpg|DAA07757.1| TPA: Rad51p [Saccharomyces cerevisiae S288c] gi|323333774|gb|EGA75165.1| Rad51p [Saccharomyces cerevisiae AWRI796] gi|323355292|gb|EGA87117.1| Rad51p [Saccharomyces cerevisiae VL3] Length = 400 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEI-IAHL--LVAEGFADVEELACVKISEIASIEGFD 402 E + + ++ + V+ I +A + L G E +A ++ I+G Sbjct: 66 EMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGIS 125 Query: 403 EETAVEIQGRA 413 E A ++ A Sbjct: 126 EAKADKLLNEA 136 >gi|284163506|ref|YP_003401785.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica DSM 5511] gi|284013161|gb|ADB59112.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica DSM 5511] Length = 343 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V A L GF + LA SE+++ E TA +I AR+ + Sbjct: 6 LETLPGVGPATADKLHDAGFDSYQSLAVASPSELSNTADVGESTASDIVRAARDAAD 62 >gi|160936405|ref|ZP_02083774.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC BAA-613] gi|158440688|gb|EDP18426.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC BAA-613] Length = 663 Score = 42.4 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ-------- 120 V +V + + ++ AR P+ + D + A Q VI + Sbjct: 405 VAQVLDGGLSVEVEGARVFIPASLVSDSYE-----KDLSKYAGQDIDFVITEFNPKRRRI 459 Query: 121 -----KVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 ++ A++ + E ++ G+ + GTVK V +DLG +DG++ E Sbjct: 460 IGDRKQLLVAQKAKLKEELFARIQPGDTVDGTVKNVTDFGAFIDLGGADGLLHISEMSWG 519 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + GD+V+ I D++ G ++ LS P+ Sbjct: 520 RVENPKKVFKAGDQVRVLIKDIQ----GEKIALSLKFPE 554 >gi|307189125|gb|EFN73581.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Camponotus floridanus] Length = 587 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 37/134 (27%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDE-KIDIV-----VWSPDSAT 285 + VGA +G +GS ++ ++ E + E K+ I+ W A Sbjct: 374 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIIGSPESQW---KAQ 430 Query: 286 FVI-NAL----RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 ++I + A V L IE++VP Q+ IG+ GQNVR ++TG I Sbjct: 431 YLIFEKMREEGYVAGTEDVRL-----TIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIK 485 Query: 341 IITEEEDSINRQKD 354 + +E++ + ++ Sbjct: 486 L-SEQQATPPSAEE 498 >gi|256071033|ref|XP_002571846.1| DNA repair protein RAD51 [Schistosoma mansoni] gi|238656994|emb|CAZ28076.1| DNA repair protein RAD51, putative [Schistosoma mansoni] Length = 338 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIA---HLLVAEGFADVEELACVKISEIASIEG 400 E +++ + D +Q + I A L GF VE + V + +++G Sbjct: 5 ESNCAVDDRVDDENCGPLLIQKLESAGIAAADVKKLREAGFHTVESIQFVPKKTLLAVKG 64 Query: 401 FDEETAVEIQGRARE 415 E A +I A++ Sbjct: 65 ISEAKADKIIEAAQK 79 >gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK] gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1P [Mycobacterium sp. Spyr1] gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK] gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium sp. Spyr1] Length = 481 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306] gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306] Length = 489 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD++ + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068] gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068] Length = 578 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSI 440 + ELA ++ + IEG ++ A +I +E + + ++R L I Sbjct: 43 SLAELAQQGVAALKEIEGIGDDLAAKIIAM----VETGKLAMLDELRSQVPESVLALLRI 98 Query: 441 PGIDSKIKVAL-GENGIKTMEDL 462 PG+ K AL E G+K++E+L Sbjct: 99 PGVGPKKAAALYKELGVKSLEEL 121 >gi|198420226|ref|XP_002126959.1| PREDICTED: similar to RAD51 homolog isoform 2 [Ciona intestinalis] Length = 250 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGID 421 ++ + L G+ VE LA E+ ++G E A + I A+ L + Sbjct: 27 LEQSGISAGDIKKLKEHGYHTVEALAYAPKKELIGVKGISEAKADKIIIEAAKLRLLAVA 86 Query: 422 IT 423 Sbjct: 87 ER 88 >gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis] Length = 489 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD++ + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084] gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084] Length = 392 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G++++GTV ++E+ V++D+G S+GVI E E + GD +++ + + Sbjct: 33 EGDLVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEVVALGDTIEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKEGRLILS 101 >gi|296196119|ref|XP_002745688.1| PREDICTED: helicase POLQ-like [Callithrix jacchus] Length = 1101 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRAKQLYSAGYKSLTHLANANPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644] gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644] Length = 395 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D + G + + ++ + + + I+Q+ REA + + VG+++ G V Sbjct: 147 EDLNQYKGQELELKIVELEPSENRLILSHKEIVQQEREANKKAVLDKLV--VGDVVEGKV 204 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 R+ +DLG DG++ E + L+ G VK + V E+ Sbjct: 205 ARLTNFGAFIDLGGVDGLVHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEK 257 >gi|21231633|ref|NP_637550.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768245|ref|YP_243007.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris str. 8004] gi|188991381|ref|YP_001903391.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris str. B100] gi|21113326|gb|AAM41474.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573577|gb|AAY48987.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris str. 8004] gi|167733141|emb|CAP51339.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris] Length = 559 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|146297643|ref|YP_001181414.1| RNA-binding S1 domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411219|gb|ABP68223.1| RNA binding S1 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 258 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 19/132 (14%) Query: 74 NYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 ++ L DP +G + + + V + + I +++R E + Sbjct: 50 MPPEEVDLSTESINDPIGALLGATIEFVVTDIQKDNVFIS---RKIAKQLRRIEFENNV- 105 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE----TIS--RENLRPGDRVKSYI 186 K G+II+G V V NV VD + + + I RE + GD VK+ + Sbjct: 106 ----KEGQIINGRVIGVSPKNVYVDAFGYEFGLTAKDVDYKWIHDMRERFKVGDSVKAKV 161 Query: 187 YDVRREQRGPQV 198 + PQ+ Sbjct: 162 I----SKNPPQI 169 >gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977] gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus] Length = 481 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|18403570|ref|NP_566719.1| NRPD7; DNA-directed RNA polymerase [Arabidopsis thaliana] gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis thaliana] gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana] Length = 174 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 27/152 (17%) Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI- 118 I + +V E+ + L+ A + S D G + + + I Sbjct: 3 IKVKLPWDVTIPAEDMDTGLMLQRAIVI----RLLEAFSKEKATKDLGYLITPTILENIG 58 Query: 119 IQKVREAERDRQYLE------FKDKVGEIISGTVKRVEYGNVIVDLGNSDGV------IR 166 K++E + Q+ FK GEI+ G V +V V + G + + + Sbjct: 59 EGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMP 118 Query: 167 RDETISREN----------LRPGDRVKSYIYD 188 E I EN ++ G RV+ + D Sbjct: 119 GYEFIPGENPFFMNQYMSRIQIGARVRFVVLD 150 >gi|312621755|ref|YP_004023368.1| RNA-binding s1 domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202222|gb|ADQ45549.1| RNA-binding S1 domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] Length = 258 Score = 42.4 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 19/131 (14%) Query: 75 YTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 ++ L DP +G + + D + V +++V Q +R E + Sbjct: 51 PAEEVDLSTQTVNDPIGALLGATIEFVVT--DIQKDNVFISRKVAKQ-LRRIEFENNV-- 105 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE----TIS--RENLRPGDRVKSYIY 187 K G+II+G V V NV +D + + + I RE + GD VK+ + Sbjct: 106 ---KEGQIINGRVIGVSPKNVYIDAFGYEFGLTAKDVDYKWIHDMRERFKVGDSVKAKVI 162 Query: 188 DVRREQRGPQV 198 ++ PQ+ Sbjct: 163 ----SKKPPQI 169 >gi|57640090|ref|YP_182568.1| RecJ-like exonuclease [Thermococcus kodakarensis KOD1] gi|57158414|dbj|BAD84344.1| RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains [Thermococcus kodakarensis KOD1] Length = 741 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 VG + GT+ RVE V V L + G+I+R + + +PGD + + DVR ++R Sbjct: 132 VGSLYKGTIDRVERFGVFVKLNPHVTGLIKRKDLLGGREYKPGDEIVVQVLDVRPDKR 189 >gi|307212541|gb|EFN88264.1| DNA repair protein RAD51-like protein 1 [Harpegnathos saltator] Length = 340 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ + L GF VE +A + +I+G E A ++ A + Sbjct: 28 LERNGITAGDIKKLQEAGFYTVESVAYAPKKHLVTIKGISEAKADKLLQEASK 80 >gi|168704591|ref|ZP_02736868.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246] Length = 618 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 12/139 (8%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V Q+ ++ + D I+ + + +D R + +++ +I+ R+ ++D+ Sbjct: 150 VFLPASQVDIRRPQSIDEYIER--TIECVILKIDEQRRNIVVSRRKLIEDRRKIQKDKLL 207 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSY 185 E + VG+I +G VK + VDLG DG++ + R+ ++ ++ Y Sbjct: 208 GELE--VGQIRTGVVKNIAEFGAFVDLGGIDGLLHITDMGWHRVTNPRDVVQIDQTLEVY 265 Query: 186 IYDVRREQRGPQVLLSRTH 204 I + RE+ ++ LS H Sbjct: 266 ILHIDREKE--KIALSLKH 282 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 60/155 (38%), Gaps = 25/155 (16%) Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P G V L + +Q + + R+ E + K K G++++G V + Sbjct: 82 PPPKPGDTVEVLLETAESEDGTIQLSYRKAK---RQKEWNAVLA--KHKEGDVVAGKVLK 136 Query: 149 VEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 G ++V++G + + + E + ++ I + ++R +++SR Sbjct: 137 KIKGGLLVNIG-VNVFLPASQVDIRRPQSIDEYIER--TIECVILKIDEQRRN--IVVSR 191 Query: 203 THPQFMVK-------LFHMEVPEIYNGIVQVKAVS 230 + L +EV +I G+V K ++ Sbjct: 192 RKLIEDRRKIQKDKLLGELEVGQIRTGVV--KNIA 224 >gi|240103517|ref|YP_002959826.1| recJ-like phosphoesterase, containing RNA binding S1 and OB-fold nucleic acid binding domain [Thermococcus gammatolerans EJ3] gi|239911071|gb|ACS33962.1| recJ-like phosphoesterase, containing RNA binding S1 and OB-fold nucleic acid binding domain [Thermococcus gammatolerans EJ3] Length = 804 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G + GT+ RVE V V L + G+I+R + + +PG+ + + DVR ++R Sbjct: 195 IGNVYKGTIDRVERFGVFVKLNPHVVGLIKRKDLLGGREYKPGEEILVQVLDVRPDKREI 254 Query: 197 QVLLS 201 ++ S Sbjct: 255 DLIES 259 >gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6] gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6] Length = 491 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E + + GD+V++ + + Sbjct: 39 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVL--TK 96 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V Sbjct: 97 EDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVT 130 >gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664] gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664] Length = 401 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER+ + + + VG++I G V R+ +D+G DG++ E Sbjct: 176 HKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQATANLHDGDIFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKLA--VFSSDSSIDP 250 E+ +GI + VS P K+ V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342 >gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus] Length = 481 Score = 42.4 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVL--TK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|157112162|ref|XP_001657421.1| DNA repair protein rad51 [Aedes aegypti] gi|108878168|gb|EAT42393.1| DNA repair protein rad51 [Aedes aegypti] Length = 341 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L GF VE +A I + +I+G E A +I A Sbjct: 30 LEGNGITSGDLKKLAEAGFHTVEAVAFAPIKHLVAIKGISEAKAEKILLEA 80 >gi|157114471|ref|XP_001652287.1| igf2 mRNA binding protein, putative [Aedes aegypti] gi|108877277|gb|EAT41502.1| igf2 mRNA binding protein, putative [Aedes aegypti] Length = 541 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 40/121 (33%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDE-KIDIV-----VWSPDSAT 285 + VGA +G +GS ++ ++ E + E K+ IV W A Sbjct: 354 NAVGAIIGTKGSHIRNIIRFSGASVKIAPLEADKPLEQQTERKVTIVGTPEAQW---KAQ 410 Query: 286 FVINALRPAIVTKVV-------LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 ++I K+ D+ +E++VP Q+ IG+ GQNVR ++TG Sbjct: 411 YLI-------FEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSI 463 Query: 339 I 339 I Sbjct: 464 I 464 >gi|56311965|emb|CAI06610.1| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1] Length = 591 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D S G + +D R V +++ ++++ ER++ K G +I G V Sbjct: 173 KDTSPYEGKEFEFKVIKLDRKRNNVVVSRRAVLEETMGEEREKLLANLK--EGTVIKGIV 230 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L GD + + + +E+ Sbjct: 231 KNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLNVGDEIDAKVLKFDQEKN 284 >gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM 20098] gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM 20098] Length = 490 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E E + GD V++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTVEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDIEKIKEADGVVE 127 >gi|302413964|ref|XP_003004814.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102] gi|261355883|gb|EEY18311.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102] Length = 355 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L+V GF +E +A + I+G E+ A +I A + Sbjct: 45 IQLIVDGGFNTIESVAYTPQRTLEQIKGISEQKAAKILAEASK 87 >gi|76801091|ref|YP_326099.1| DNA repair and recombination protein RadA [Natronomonas pharaonis DSM 2160] gi|76556956|emb|CAI48530.1| DNA repair and recombination protein [Natronomonas pharaonis DSM 2160] Length = 345 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 T + V A L G+ + +A +E+++ E A +I AR Sbjct: 1 MAATTADLEELPGVGPATADKLRENGYDSYQSIAVASPAELSNTADIGESNANDIIQAAR 60 Query: 415 EYLE 418 E + Sbjct: 61 EAAD 64 >gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia 768-28] gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia 768-28] Length = 358 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + V + A L G+ ++A + E+A I G E+ A +I A++ + Sbjct: 54 EIEGVGRVTAQKLREAGYNTARDVAFASVKELADILG-SEDRAKQIIAAAQKLI 106 >gi|217077883|ref|YP_002335601.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Thermosipho africanus TCF52B] gi|217037738|gb|ACJ76260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Thermosipho africanus TCF52B] Length = 811 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 11/85 (12%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENL 176 ++++ + E K G+II G VK++E V + DG++ E + L Sbjct: 440 NEQKEKFFNE--RKEGDIIEGIVKKIEKFGAFVRIFEGIDGLLPNSEVSYDTSLKVEDVL 497 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLS 201 G VK YI + +E R ++LLS Sbjct: 498 SEGQSVKLYIKKIDKENR--KILLS 520 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 5/114 (4%) Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK---D 136 ++ ++ +D G++S P + K++ E ++ + Sbjct: 227 TIDEIKEIPKGVDSVGIISGTSTPKEIVEEIAAGLKKLGGMLQMENNFEKLLDSYLFDNV 286 Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN-LRPGDRVKSYIYD 188 + GEI+ V R + VD G S+GV+ DE + + G+++ + Sbjct: 287 RKGEIVEAVVLRKGESEIFVDFGWKSEGVVTSDELVKDVKDYKIGEKLSLILLR 340 >gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3] gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3] Length = 492 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 49 GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVL--QK 106 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 107 EDKEGRLILS 116 >gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3] gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3] Length = 492 Score = 42.4 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E + + GD+V++ + + Sbjct: 39 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVL--TK 96 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V Sbjct: 97 EDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVT 130 >gi|255550293|ref|XP_002516197.1| DNA repair protein rad51, putative [Ricinus communis] gi|223544683|gb|EEF46199.1| DNA repair protein rad51, putative [Ricinus communis] Length = 294 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +Q + + L G VE +A E+ I+G E +I A + Sbjct: 30 LQESGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 82 >gi|237833229|ref|XP_002365912.1| DNA repair protein, putative [Toxoplasma gondii ME49] gi|211963576|gb|EEA98771.1| DNA repair protein, putative [Toxoplasma gondii ME49] gi|221488373|gb|EEE26587.1| DNA repair protein, putative [Toxoplasma gondii GT1] gi|221508875|gb|EEE34444.1| DNA repair protein, putative [Toxoplasma gondii VEG] Length = 354 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 11/59 (18%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR-----------AREYLEGID 421 LL G+ VE +A + + +++G E+ +++ A+EYLE + Sbjct: 52 ELLKDAGYQTVECIAFAPVKNLVAVKGLSEQKVEKLKKASKELCNLGFCSAQEYLEARE 110 >gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24] gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24] Length = 491 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E + + GD+V++ + + Sbjct: 39 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVL--TK 96 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V Sbjct: 97 EDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVT 130 >gi|68485285|ref|XP_713476.1| hypothetical protein CaO19.11236 [Candida albicans SC5314] gi|68485358|ref|XP_713440.1| hypothetical protein CaO19.3752 [Candida albicans SC5314] gi|46434928|gb|EAK94324.1| hypothetical protein CaO19.3752 [Candida albicans SC5314] gi|46434968|gb|EAK94361.1| hypothetical protein CaO19.11236 [Candida albicans SC5314] gi|238879694|gb|EEQ43332.1| DNA repair protein RAD51 [Candida albicans WO-1] Length = 361 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ ++ L AEGF +E +A + +++G E A +I A Sbjct: 45 LEGNGINASDIKKLKAEGFHTIESIAYTPKRHLMTVKGISENKAEKISAEA 95 >gi|241958150|ref|XP_002421794.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis CD36] gi|223645139|emb|CAX39736.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis CD36] Length = 361 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ ++ L AEGF +E +A + +++G E A +I A Sbjct: 45 LEGNGINASDIKKLKAEGFHTIESIAYTPKRHLMTVKGISENKAEKISAEA 95 >gi|254524507|ref|ZP_05136562.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14] gi|219722098|gb|EED40623.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14] Length = 561 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|260817896|ref|XP_002603821.1| hypothetical protein BRAFLDRAFT_124688 [Branchiostoma floridae] gi|229289144|gb|EEN59832.1| hypothetical protein BRAFLDRAFT_124688 [Branchiostoma floridae] Length = 1215 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 7/81 (8%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V + A L G+ +++LA + + I+ + A +I A+ + Sbjct: 1101 LMEVPGVKQGRARQLYKAGYKTLQDLAHAETESLVQNIQHMPRKVAYQIIAAAKVLISEK 1160 Query: 421 DITLQKKIRELGVSEELCSIP 441 +L ++ +E+L ++P Sbjct: 1161 AESLLEE------AEDLVAMP 1175 >gi|190574008|ref|YP_001971853.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia K279a] gi|190011930|emb|CAQ45551.1| putative 30S ribosomal protein S1 [Stenotrophomonas maltophilia K279a] Length = 561 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|76157801|gb|AAX28612.2| SJCHGC08668 protein [Schistosoma japonicum] Length = 226 Score = 42.4 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +++ + L GF VE + V + +++G E A +I A++ Sbjct: 20 LESAGIAAADVKKLREAGFHTVESIQFVPKKTLLAVKGISEAKADKIIEAAQK 72 >gi|258515332|ref|YP_003191554.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779037|gb|ACV62931.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum acetoxidans DSM 771] Length = 676 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 16/101 (15%) Query: 109 VAVQSA-KQVIIQKVREAERDRQYLEFKDK---------VGEIISGTVKRVEYGNVIVDL 158 + Q I +KV + + E+ ++ G+ +SG V+R+ VD+ Sbjct: 445 ITAQVIEINRIRRKVVLSRKAILEEEYANRKEELLNSLQEGQTVSGIVRRITNFGAFVDI 504 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ E E ++ GD V + + R Sbjct: 505 GGVDGLLHISEMAWYRVTHPSEIVQVGDEVTVMVLKIDRNA 545 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRR 191 G+I+ G V ++ V+VD+G S+G I E E ++ GD + ++ Sbjct: 312 GDIVKGVVVQIGQDEVLVDVGSKSEGFISAKELSSFNINSPDEVVKIGDEIDVFVISAED 371 Query: 192 EQRGPQVLLSRTHPQFMVKLFH--MEVPEIYNGIV 224 + ++ +R + +E E G V Sbjct: 372 NEGRIKLSKTRADAENAWAKLESLLESSEKIEGTV 406 >gi|226324699|ref|ZP_03800217.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758] gi|225207147|gb|EEG89501.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758] Length = 359 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 8/132 (6%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + + ++D S + + + R + ++ ++ R ++ Sbjct: 125 VVDEARVFIPASLVSDTYEKDLSKYKDQEIEFVISEFNPRRNRIIGDRRQLLVAERAEKQ 184 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDR 181 + + K VG++I GTVK V +DLG DG++ E ++ G+ Sbjct: 185 KELFAKLK--VGDVIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVDNPKKVFTVGET 242 Query: 182 VKSYIYDVRREQ 193 +K + D+ + Sbjct: 243 LKVLVKDIHDTK 254 >gi|149246169|ref|XP_001527554.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239] gi|146447508|gb|EDK41896.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239] Length = 362 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%) Query: 333 QLTGWTI-----DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 +L G I DI + ++ ++ V L +EGF +E + Sbjct: 12 RLEGTNINSTEADIHLDGGAGEEEEELNGPLLIEQLEGNGVTASDIKKLKSEGFHTIESI 71 Query: 388 ACVKISEIASIEGFDEETAVEI-QGRAR 414 A + +++G E A +I A+ Sbjct: 72 AYTPRRHLMTVKGISEAKAEKISLEAAK 99 >gi|118577398|ref|YP_899638.1| hypothetical protein Ppro_3797 [Pelobacter propionicus DSM 2379] gi|118504903|gb|ABL01385.1| hypothetical protein Ppro_3797 [Pelobacter propionicus DSM 2379] Length = 242 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 28/179 (15%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE--FKDKVGEIISGTVKRVE 150 IG V + G+ + I +++ R Y + G++++G ++ Sbjct: 57 IGDPV--EITHDRIGKKLRRHLLYAIEHELQ--TRQTVYEAERLRQLQGKVLTGFPSGLD 112 Query: 151 Y-GNVIVDLGNSD--------GVIRRDETI--SRENLRPGDRVKSYIYDVRREQRGPQ-- 197 G+V V++ S G R R+ G Y+ V Q Sbjct: 113 PDGSVRVEMDLSSQFRRYILLGTCPRRYQPLHERDTYLRGKEYSWYVCSVLPVTNHRQTK 172 Query: 198 --VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS--IDPVG 252 ++LSRT Q L +GI ++ +SR PG A + I+ VG Sbjct: 173 VRIVLSRTSKQLPAILLRQ-----RSGIERIICLSRIPGGPADIVTAQKIPKDIINSVG 226 >gi|304383005|ref|ZP_07365484.1| 30S ribosomal protein S1 [Prevotella marshii DSM 16973] gi|304335858|gb|EFM02109.1| 30S ribosomal protein S1 [Prevotella marshii DSM 16973] Length = 591 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 8/103 (7%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG 159 P DF ++ +V V + E ++ Y E + +++ GTV ++ V+V++G Sbjct: 9 PLEDFNWDEFENGSKV---NVSKEELEKSYDETLNNVSEHQVVEGTVISMDKKEVVVNIG 65 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDGVI E +L+ GD+V+ Y+ + +++G Q++LS Sbjct: 66 YKSDGVIPASEFRYDPDLKVGDKVEVYVES-QEDKKG-QLILS 106 Score = 37.0 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ + + + +I+ EA++ Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNIVVSHKALIEAEMEAQKKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+I+ GTVK + V VDLG DG+I + E + ++ Sbjct: 207 ISKLE--KGQILEGTVKNITSYGVFVDLGGVDGLIHITDLSWGRVSDPHEVVELDQKINV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDDEKK 274 >gi|289644109|ref|ZP_06476204.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata] gi|289506078|gb|EFD27082.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata] Length = 484 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 40 GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVL--QK 97 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 98 EDKEGRLILS 107 >gi|91080339|ref|XP_974640.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum] gi|270006418|gb|EFA02866.1| spindle A-like protein [Tribolium castaneum] Length = 338 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 L GF +E +A + +I+G E ++ A +++ Sbjct: 40 LEDAGFHSIESIAYTPKKVLGAIKGISEAKVDKLLAEAAKFV 81 >gi|170290966|ref|YP_001737782.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175046|gb|ACB08099.1| DEAD/DEAH box helicase domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 695 Score = 42.0 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 V + A LL G+ V ++A + ++ I G ++ + E+ +AR Sbjct: 638 GVGRVRAKLLYEAGYRTVRDIAEAEPEQLERIVGIGKQLSRELVDQAR 685 >gi|326387158|ref|ZP_08208768.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM 19370] gi|326208339|gb|EGD59146.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM 19370] Length = 566 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 14/158 (8%) Query: 43 YGTMSDIR-VEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL 101 +G + V G ++ V Q+ ++ RD P +DI + Sbjct: 109 FGEGKRVEGVIFGRVKGGFTVDLDGAVA---FLPGSQVDIRPVRDVQPLMDIPQP--FQI 163 Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS 161 MD R + +++ ++++ R +R K G+II G VK + VDLG Sbjct: 164 LKMDRRRGNIVVSRRAVLEETRAEQRSGLIQNLK--EGQIIDGVVKNITDYGAFVDLGGI 221 Query: 162 DGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 DG++ + E + GD V+ I + ++ Sbjct: 222 DGLLHVTDMSYKRVNHPSEVIAIGDTVRVQIIRINQDT 259 Score = 37.0 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN---LRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E L+ GD V+ Y+ V Sbjct: 27 EGRVVKGTVTAIENDKAVIDVGLKSEGRVPLREFAPPGQPHGLKVGDEVEVYVDRVENAD 86 Query: 194 RGPQVLLSR 202 +LSR Sbjct: 87 GEA--MLSR 93 >gi|268610021|ref|ZP_06143748.1| 30S ribosomal protein S1 [Ruminococcus flavefaciens FD-1] Length = 307 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 20/118 (16%) Query: 99 DPLPPMDFGRVA----VQSAKQVIIQKVREAERDRQY----------LEFKDK--VGEII 142 P+ + R++ + Q+I V+ ERDR + E D+ +GE + Sbjct: 152 IPIDSISVSRISDPSDRFTVGQMIKAAVKRCERDRVFLTHKELLGTWEENADRFCIGETV 211 Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLL 200 SG V+ +E + V+L + + +E + G+RV YI + RE+ ++++ Sbjct: 212 SGIVRSIEDYGIFVELAPNLAGLAE----PKEGVSAGERVSVYIKSIIREKMKVKLII 265 >gi|149923649|ref|ZP_01912045.1| ribosomal protein S1 [Plesiocystis pacifica SIR-1] gi|149815464|gb|EDM75001.1| ribosomal protein S1 [Plesiocystis pacifica SIR-1] Length = 391 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 10/129 (7%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + VA D SI G ++ + + +V +++ ++Q+ RE + + G+ Sbjct: 141 VHVAYTPDISIYEGQSLAFKVLEIRDKGRSVVVSRKALLQEEREQKGKALLEQLA--EGQ 198 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR------PGDRVKSYIYDVRREQR 194 I++GTV+ ++ VDLG +G+I E R G++++ + + Sbjct: 199 IVTGTVQTIQPYGAFVDLGGVEGLIHISELGHGRVERVEDVVSVGEQIRVKVLTIEPGDG 258 Query: 195 G--PQVLLS 201 ++ LS Sbjct: 259 KVATRISLS 267 >gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1] gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1] Length = 491 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E + + GD+V++ + + Sbjct: 39 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVL--TK 96 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V Sbjct: 97 EDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVT 130 >gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567] gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931] gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567] gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931] Length = 486 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++SG V +V++ V++D+G ++GVI E E + GD +++ + + Sbjct: 33 GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEIEALVL--TK 90 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 91 EDKEGRLILS 100 >gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp. 128-5-R1-1] gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp. 128-5-R1-1] Length = 773 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 44/226 (19%) Query: 20 KSIDRDVVLSVMADS---IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 K I ++++ + + +Y + + + E++P I ++ +V EE Sbjct: 511 KGITKEIMTEALKQAKEGRLYILEKMYEAIPEPKKELSPYAPRIVIY---KVPEEKAALV 567 Query: 77 CQISLKVARDRDPSIDIGGVVSDP--LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + ++ V + + + A+Q A ++I V++ E + Y Sbjct: 568 IGPGGSNVKKIYEETEVKIWVGEEGKVFLTGYSDEAIQKAIEMIENLVKDVEVGQVYE-- 625 Query: 135 KDKVGEIISGTVKRVEYGNVIVD-LGNSDGVIRRDETIS-----RENLRPGDRVKSYIYD 188 G V RVE V V+ L G++ + + GD VK + + Sbjct: 626 ---------GKVTRVEPYGVFVEILPGKVGLLHVSKMAQPIKHAGDKYSVGDTVKVKVLE 676 Query: 189 VRREQRGPQVLLSRTHPQFMVKLF---------HMEVPEIYNGIVQ 225 V R P+F +EV E+Y G V Sbjct: 677 VDDMGR----------PKFTTMGLDGSSSPPEKKIEVGEVYEGKVT 712 >gi|73669152|ref|YP_305167.1| bifunctional DNA polymerase X family protein/ histidinol phosphatase [Methanosarcina barkeri str. Fusaro] gi|72396314|gb|AAZ70587.1| DNA polymerase X family / putative histidinol phosphatase [Methanosarcina barkeri str. Fusaro] Length = 584 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 19/121 (15%) Query: 357 ERTQFFMQAINVDE-----------IIAHLLVAEGFADVEEL-ACVKISEIASIEGFDEE 404 E + F +A ++ E A ++ D+E++ A + + I G E Sbjct: 5 EIAELFYEAADILEYQQVEWKPRAYRKAAQMIENLGEDIEKIYAREGKAGLTKIPGIGES 64 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVS--EELCSIPGIDSKIKVALGEN-GIKTMED 461 A I EYLE + +K++E S EL I G+ +K L + G++T+ D Sbjct: 65 IADHI----SEYLETNKVEKFEKLKEKAPSGTAELMEIRGLGAKKIKKLSDTLGVRTLSD 120 Query: 462 L 462 L Sbjct: 121 L 121 >gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117] gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117] Length = 491 Score = 42.0 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V++ V++D+G ++GVI E E + GD V++ + + Sbjct: 39 GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVL--TK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|332673856|gb|AEE70673.1| 30S ribosomal protein S1 [Helicobacter pylori 83] Length = 552 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE-TISR 173 K + QK++E + E D II G + G IV+ + + R ++ Sbjct: 96 KAISQQKIQEKIEE--LGE--DYENAIIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKN 151 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G R+K+ I V +E + +SR Sbjct: 152 DANHIGKRIKACIIRVDKENH--SINISR 178 >gi|325294239|ref|YP_004280753.1| RNA binding S1 domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064687|gb|ADY72694.1| RNA binding S1 domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 338 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P + + + +D R ++ +++ ++++ R R + K G+++ G VK Sbjct: 137 PDDWLDREIEAKVLSVDRKRRSIVISRRKLLEEKRAKMRKETLEKLK--EGDVVEGIVKN 194 Query: 149 VEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 V + VD+ DG++ + + + GDR+K I + RE+ Sbjct: 195 VVDFGIFVDVQGVDGLVHKSDISWSGLKTPFDTAEIGDRIKVKIKKIDREK 245 Score = 37.7 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 123 REAERDRQYLE-FKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 E E R + FK EII+GTV +V +D G S+G++ E + G+ Sbjct: 1 MEGEFARLLEKSFKRLNNEIITGTVVKVTDREAFIDFGWKSEGIVPLKEL--GYKPKIGE 58 Query: 181 RVKSYIYDVRREQ 193 + + + E+ Sbjct: 59 EIDVCVVEPETEE 71 >gi|304316816|ref|YP_003851961.1| RNA binding S1 domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778318|gb|ADL68877.1| RNA binding S1 domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 362 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G++I G VK + +D+G DG+I E + L G++V +Y+ + Sbjct: 187 QEGQVIQGVVKSITKFGAFIDIGGIDGLIPLSEISWVRNKNINDILHIGEKVDAYVERID 246 Query: 191 REQRGPQVLLS 201 +E +V LS Sbjct: 247 KE----KVTLS 253 >gi|322420780|ref|YP_004200003.1| 30S ribosomal protein S1 [Geobacter sp. M18] gi|320127167|gb|ADW14727.1| ribosomal protein S1 [Geobacter sp. M18] Length = 584 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I+SG VK + VDLG DG++ + E ++ GD + + Sbjct: 215 KEGDIVSGVVKNIAEYGAFVDLGGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNVIVLKYD 274 Query: 191 REQRGPQVLLSRTHPQ 206 RE+ + L +T P Sbjct: 275 REKGKISLGLKQTVPD 290 >gi|90192351|gb|ABD91838.1| rad51 [Physarum polycephalum] Length = 198 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 30/69 (43%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 +++++ +++ ++ + L+ GF VE +A +++++G E Sbjct: 2 QDNAVEAEEESGPIPIAKLEGSGISAADIKKLMESGFHTVESVAYATKKSLSAVKGISEA 61 Query: 405 TAVEIQGRA 413 A ++ A Sbjct: 62 KADKLVESA 70 >gi|157695034|gb|ABV66106.1| 30S ribosomal protein S1 [Rickettsiella melolonthae] Length = 298 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RD SI G + + +D R + +++ I++ +A R++ E + G++I G V Sbjct: 19 RDSSIIEGKDLEFKVIKLDPKRNNIVLSRRAILESEGQAGREQLLTELE--EGQVIKGIV 76 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + +DLG DG++ + E L GD ++ + + R++ Sbjct: 77 KNLADYGAFIDLGGIDGLLHVTDISWKRVKQPSEVLTIGDEIEVVVLKIERDR 129 >gi|194365424|ref|YP_002028034.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia R551-3] gi|194348228|gb|ACF51351.1| ribosomal protein S1 [Stenotrophomonas maltophilia R551-3] Length = 561 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP+ G + L +D R V +++ +++ ER++ + + G I+ G V Sbjct: 143 RDPAYLEGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKL--QEGAILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|312212267|emb|CBX92350.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria maculans] Length = 348 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAI-NVDEIIA---HLLVAEGFADVEELACVKISEIAS 397 ++ EE+ + A+ V+ + A L+V GF VE +A + Sbjct: 1 MSNEEEQYEESTMGGPGAPTPVSALEGVNGLTARDIKLVVEGGFNTVESIAYTPRRALEQ 60 Query: 398 IEGFDEETAVEIQGRARE 415 I+G E+ A ++ A + Sbjct: 61 IKGISEQKASKLLAEASK 78 >gi|310793292|gb|EFQ28753.1| hypothetical protein GLRG_03897 [Glomerella graminicola M1.001] Length = 350 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L+V GF VE +A + I+G E+ A +I A + Sbjct: 41 IQLVVDGGFNTVESVAYTPRRTLEQIKGISEQKATKILAEASK 83 >gi|313124902|ref|YP_004035166.1| DNA repair and recombination protein rada [Halogeometricum borinquense DSM 11551] gi|312291267|gb|ADQ65727.1| DNA repair and recombination protein RadA [Halogeometricum borinquense DSM 11551] Length = 343 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V A L GF + +A SE+++ E T+ +I ARE + Sbjct: 6 LESLPGVGPATADKLTDAGFESYQAIAVASPSELSNTADVGESTSSDIINAAREAAD 62 >gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter ruminantium M1] gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter ruminantium M1] Length = 311 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 22/168 (13%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY----L 417 NV E A L GFAD+ LA E++ E A ++ AR+ Sbjct: 4 LEDLPNVGEKTAEKLREAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKAEKIDF 63 Query: 418 EGIDITLQKKIRELGVSEELCSIPGI------DSKIKVALGENGIKTMEDLAGCSV---- 467 E ++++ ++ ++ + I GE G + +V Sbjct: 64 ETAFDVMERRRDVGRITTGSKNVDELIGGGIETQSITEVFGEFGSGKSQISHELAVTVQL 123 Query: 468 --------DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 + + E+ + + G +++ I AR Sbjct: 124 PKERGGLEGECVFIDTENTFRPERIEQIADACGIDREEALQRIHIARA 171 >gi|292654282|ref|YP_003534179.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2] gi|2500108|sp|Q48328|RADA_HALVO RecName: Full=DNA repair and recombination protein radA gi|1378032|gb|AAC44121.1| RadA [Haloferax volcanii] gi|291370076|gb|ADE02303.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2] Length = 343 Score = 42.0 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V A LV G+ + +A E+++ TA +I AR+ + Sbjct: 6 LESLPGVGPATADKLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAAD 62 >gi|317011250|gb|ADU84997.1| 30S ribosomal protein S1 [Helicobacter pylori SouthAfrica7] Length = 553 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 17/155 (10%) Query: 51 VEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGR 108 V IN + G + ++ V + E +++L +D + + R Sbjct: 39 VSINEDEG----YAMVSVGGKTE---GRLALSEIKDEKGQLLYHKNDFIKVHV-SEKGER 90 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRD 168 +V K + QK++ + E + II G + G IV+ + + R Sbjct: 91 PSVSYKKAISQQKIQAKIEE--LGE--NYENAIIEGKIVGKNKGGYIVESQGVEYFLSRS 146 Query: 169 ET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + + + G R+K+ I V +E + +SR Sbjct: 147 HSSLKNDANHIGKRIKACIIRVDKENH--SINISR 179 >gi|124005220|ref|ZP_01690062.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134] gi|123989472|gb|EAY29033.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134] Length = 596 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 5/89 (5%) Query: 123 REAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 + AE ++ Y E + E+++GTV ++ VI+++G SDG++ E +L+ G Sbjct: 26 KRAELEKMYDETLTQVQEKEVVTGTVVKIVDREVILNIGFKSDGLVPLSEFRDMPDLKSG 85 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 D V+ +I + + + G Q++LSR + + Sbjct: 86 DEVEVFIEN-QEDANG-QLILSRKKAKIL 112 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D I +G + + +++ V + +V+I+K E ++ R Sbjct: 148 EAFLPGSQIDVKPIRDFD--IYVGKKMEVKVVKINYANDNVVVSHKVLIEKDLEEQKARI 205 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+++ G +K + V +DLG DG++ + E L +V Sbjct: 206 LNNLE--KGQVLEGVIKNMTNFGVFIDLGGVDGLLHITDISWGRISHPEEVLNLDQKVNV 263 Query: 185 YIYDVRREQRGPQV 198 + D E++ + Sbjct: 264 VVLDFDDEKKRISL 277 >gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107 str. F0167] Length = 368 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 14/146 (9%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAE 126 VVE+ + + +RD S + + + R + KQ+++ K +E + Sbjct: 125 VVEDARVFIPASLVSDTFERDLSKYKDTEIEFVITEFNPKRRRIIGDRKQLLVAK-KEEQ 183 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 + + + G++I GTVK V VDLG +DG++ E ++ + G+ Sbjct: 184 KKALFEKITP--GDVIEGTVKNVTDFGAFVDLGGADGLLHISEMSWGRVENPKKVFKSGE 241 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQ 206 V ++I D+ G ++ LS P Sbjct: 242 TVTAFIKDIS----GEKIALSMKFPD 263 >gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC 33806] gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266] gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC 33806] gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266] Length = 493 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD++ + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGDQIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|78212274|ref|YP_381053.1| SSU ribosomal protein S1P [Synechococcus sp. CC9605] gi|78196733|gb|ABB34498.1| RNA binding S1 [Synechococcus sp. CC9605] Length = 424 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V DL G I R + + EN + G + +V E Sbjct: 236 EKQGKVVQVIVNNFNRGGVTCDLQGLRGFIPRSQLQNGENHQELVGKTLGVAFIEVNSET 295 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + +EV ++ G V Sbjct: 296 R--KLVLSEKRAAVAERFQDLEVGQLVEGQV 324 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 GE+I GTV +E V VD+ G + G + + E T RE G V+ + Sbjct: 152 GEVIKGTVIGIESDGVYVDIGGKAPGYMPKSEAGLGVVTNFRERFPKGLEVEVLVTR 208 >gi|71411957|ref|XP_808187.1| myosin heavy chain [Trypanosoma cruzi strain CL Brener] gi|70872338|gb|EAN86336.1| myosin heavy chain, putative [Trypanosoma cruzi] Length = 3543 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA L DI ED R+ D + + Q +E +A L A Sbjct: 2800 READNEKLAEDLAQREADIEKLAEDLAQREADNEKLAEDLAQREADNEKLAEELAQRE-A 2858 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 D+E+LA ++A E +E+ A E+ R + + + Q++ ++E+L Sbjct: 2859 DIEKLA----EDLAQREADNEKLAEELAQREADNEKLAEDLAQREADNEKLAEDLAQREA 2914 Query: 443 IDSKIKVALGENGIKTMEDLAG 464 + K+ L + +E LA Sbjct: 2915 DNEKLAEELAQREA-DIEKLAE 2935 Score = 40.8 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 7/181 (3%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA +L DI ED R+ D + T Q +E +A L A Sbjct: 2604 READNEKLAEELAQREADIEKLAEDLAQREADIEKLTDELAQREADNEKLAEDLAQRE-A 2662 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 D E+LA ++A E +E+ E+ R + + D Q++ ++E+L Sbjct: 2663 DNEKLA----EDLAQREADNEKLVEELAQREADIEKLTDELAQREADNEKLAEDLAQREA 2718 Query: 443 IDSKIKVALG--ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVES 500 + K+ L E I+ + D D E + L + E Sbjct: 2719 DNEKLAEDLAQREADIEKLTDELAQREADNEKLVEELAQREADIEKLTDELAQREADNEK 2778 Query: 501 M 501 + Sbjct: 2779 L 2779 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 9/159 (5%) Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIG-RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 V +DE + EQL+ A+ R N +LA L DI ++ R+ D Sbjct: 1163 SVTIDELNKTTTL---NEQLTRALAQREADNEKLAEDLAQREADIEKLTDELAQREADIE 1219 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + T Q +E + L AD E+LA ++A E +E+ A ++ R + Sbjct: 1220 KLTDELAQREADNEKLTDELAQRE-ADNEKLA----EDLAQREADNEKLAEDLAQREADN 1274 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENG 455 + + Q++ ++E+L + K+ L + Sbjct: 1275 EKLAEDLAQREADNEKLAEDLAQREADNEKLAEELAQRE 1313 Score = 37.7 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 6/142 (4%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA +L DI ED R+ D + T Q +E +A L Sbjct: 2982 READNEKLAEELAQREADIEKLAEDLAQREADIEKLTDELAQREADNEKLAEDLAQR--- 3038 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 E ++A E +E+ E+ R + + D Q++ ++E+L Sbjct: 3039 --EADNEKLTDDLAQREADNEKLVEELAQREADIEKLTDELAQREADNEKLAEDLAQREA 3096 Query: 443 IDSKIKVALGENGIKTMEDLAG 464 + K+ L + E LA Sbjct: 3097 DNEKLVEELAQREADN-EKLAE 3117 Score = 37.7 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA +L DI ++ R+ D + + Q +E + L A Sbjct: 743 READNEKLAEELAQREADIEKLTDELAQREADNEKLAEDLAQREADNEKLVEELAQRE-A 801 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 D+E+L E+A E +E+ A E+ R + + D Q++ ++E+L Sbjct: 802 DIEKLT----DELAQREADNEKLAEELAQREADIEKLTDELAQREADNEKLAEDLAQREA 857 Query: 443 IDSKIKVALGENGI---KTMEDLAGCSVD 468 + K+ L + K EDLA D Sbjct: 858 DNEKLAEDLAQREADNEKLAEDLAQREAD 886 Score = 36.6 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 12/203 (5%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA L D E+ R+ D + T Q +E +A L A Sbjct: 2077 READNEKLAEDLAQREADNEKLAENLAQREADIEKLTDELAQREADNEKLAEDLAQRE-A 2135 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 D E+LA ++A E +E+ E+ R + + D Q++ ++E+L Sbjct: 2136 DNEKLA----EDLAQREADNEKLVEELAQREADNEKLTDELAQREADNEKLAEDLAQREA 2191 Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMI 502 + K+ L + E LA + + +G S ++ Sbjct: 2192 DNEKLAEDLAQREADN-EKLAEELAQREAVIEGAEADASKTIEGVYSRCRELEE------ 2244 Query: 503 IHARYKMGWIEKEKVADEEVQDA 525 + AR ++ + + E+ DA Sbjct: 2245 LAARRELAATGDVDILERELADA 2267 Score = 36.6 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 9/182 (4%) Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R N +LA L D ED R+ D + + Q +E +A L A Sbjct: 2492 READNEKLAEDLAQREADNEKLAEDLAQREADNEKLAEDLAQREADNEKLAEDLAQRE-A 2550 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 D+E+LA ++A E +E+ A ++ R + + + Q++ ++E+L Sbjct: 2551 DIEKLA----EDLAQREADNEKLAEDLAQREADNEKLAEELAQREADIEKLAEDLAQREA 2606 Query: 443 IDSKIKVALGENGIKTMEDLAG---CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVE 499 + K+ L + +E LA D+ ++ + L + E Sbjct: 2607 DNEKLAEELAQREA-DIEKLAEDLAQREADIEKLTDELAQREADNEKLAEDLAQREADNE 2665 Query: 500 SM 501 + Sbjct: 2666 KL 2667 >gi|332816911|ref|XP_003309859.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pan troglodytes] Length = 1792 Score = 42.0 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLE-------GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++ Q+ + ++ + G D + + Sbjct: 1478 ASEAQQRAQAALDKANASRGQVEQANQELRELIQSVKDFLNQEGADPDSIEMVATRVLEL 1537 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1538 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1596 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1597 KAETVQAA 1604 >gi|284040497|ref|YP_003390427.1| RNA binding S1 domain protein [Spirosoma linguale DSM 74] gi|283819790|gb|ADB41628.1| RNA binding S1 domain protein [Spirosoma linguale DSM 74] Length = 595 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K E++ GTV + V++++G SDG++ E +L+ GD ++ Y+ + + + G Sbjct: 46 KEKEVVMGTVVGITDREVLLNIGFKSDGLVPASEFRDMPDLKMGDEIEVYVEN-QEDPNG 104 Query: 196 PQVLLSR 202 Q++LSR Sbjct: 105 -QLVLSR 110 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D I +G + + +++ V + +V+I+K EA+R + Sbjct: 152 EAFLPGSQIDVKPIRDFD--IFVGKKMEVKVVKINYANDNVVVSHKVLIEKDLEAQRAQI 209 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+++ G +K + V +DLG DG++ + E L +V Sbjct: 210 LNNLE--KGQVLEGVIKNMTNFGVFIDLGGVDGLLHITDISWGRISHPSEVLHLDQKVNV 267 Query: 185 YIYDVRREQRGPQV 198 + D +++ + Sbjct: 268 VVLDFDEDKKRISL 281 >gi|296121473|ref|YP_003629251.1| type I site-specific deoxyribonuclease, HsdR family [Planctomyces limnophilus DSM 3776] gi|296013813|gb|ADG67052.1| type I site-specific deoxyribonuclease, HsdR family [Planctomyces limnophilus DSM 3776] Length = 1065 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 27/205 (13%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + A A + + + V+ +S KAA + + VE E Sbjct: 730 EAIAEARAFCDSRGVSLERVIDANPESFHKAA--ELAQAAHLLVE-------------AE 774 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL----PPMDFGRVAVQSAKQVIIQKVR 123 VVE V++ +I L + + VV P A+++ V+ +K+R Sbjct: 775 VVEAVDDAVEKIILNDDLKKQFLFHVAQVVKLYKAILPDPRANEFAAIKTCLVVLAEKIR 834 Query: 124 EAERDRQYLEFKDKVGEII------SGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 + D+VGE++ G V ++DL D + Sbjct: 835 NLTDKANIDDLLDQVGELLDESISTVGYVIHATEETSLIDLSEVDFEALKAHFSKGRKHT 894 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSR 202 +++K+ + ++ R Q+ SR Sbjct: 895 EAEKLKALVS--QKLTRMVQLNKSR 917 >gi|213962551|ref|ZP_03390813.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno] gi|213954877|gb|EEB66197.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno] Length = 584 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 127 RDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 + F D + E++ G V R+ I+D+ S+GVI +E NL+ GD+V+ Sbjct: 36 EELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPNLKVGDKVEV 95 Query: 185 YIYDVRREQRGPQVLLS 201 I D+R ++ G Q++LS Sbjct: 96 LI-DIREDKNG-QLVLS 110 Score = 37.0 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD + ++ +F V V K +I + E +++ Sbjct: 153 EAFLPGSQIDVKPIRDYEQFVNKTMEFKIVKVNHEFKNVVVSH-KALIEADIEEQKKEII 211 Query: 131 YLEFKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVK 183 G+++ G VK + V VDLG DG+I + E + ++ Sbjct: 212 ----SQLEKGQVLEGVVKNITSYGVFVDLGGVDGLIHITDLSWARINHPSEVVSVDQKLN 267 Query: 184 SYIYDVRREQRGPQV 198 I D + Q+ Sbjct: 268 VVILDFDDNKSRIQL 282 >gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209] gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209] Length = 504 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ G V +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 54 GDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVL--TK 111 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V Sbjct: 112 EDKEGRLILSKKRAQYERAWGDIEKVQEEDGVVT 145 >gi|323337982|gb|EGA79221.1| Rad51p [Saccharomyces cerevisiae Vin13] Length = 334 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + +E F + + I + ++ L G E +A ++ I+G Sbjct: 1 MEDEAYDEAALGSFVPIEKLQVNGITMADV--KKLRESGLHTAEAVAYAPRKDLLEIKGI 58 Query: 402 DEETAVEIQGRA 413 E A ++ A Sbjct: 59 SEAKADKLLNEA 70 >gi|292655597|ref|YP_003535494.1| hypothetical protein HVO_1445 [Haloferax volcanii DS2] gi|291371009|gb|ADE03236.1| conserved hypothetical protein [Haloferax volcanii DS2] Length = 320 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + VDE A LL G V LA +A D +G+AR+ +E Sbjct: 262 EPLTTLAGVDEADAELLAEAGVRSVRRLATADPEHVADALQIDPTVVSAWKGQARDAME 320 >gi|312135143|ref|YP_004002481.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor owensensis OL] gi|311775194|gb|ADQ04681.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor owensensis OL] Length = 663 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 GE++ G + +VE V+VD+G ++G+I ++E I E GD +++ + Sbjct: 305 GEVVKGRIIKVEEDYVLVDIGYKAEGIIYKNEIIKNGNVILKEMFEIGDTIEAVVVK 361 >gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641] gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] Length = 403 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 9/85 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G+++ GTV ++E V+VD+G S+GVI E + + GD +++ + + Sbjct: 33 EGDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEALVL--Q 90 Query: 191 REQRGPQVLLSRTHPQFMVKLFHME 215 +E + +++LS+ ++ +E Sbjct: 91 KEDKDGRLILSKKRAEYERAWISVE 115 >gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941] Length = 411 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G++ G V V VD+G +DG++ E E L+PGD+V+ Y+ + Sbjct: 233 KEGDVREGVVTSVCDFGAFVDIGGADGLVHLSELSWSRVKHPSEILKPGDKVQVYVLSID 292 Query: 191 REQRGPQVLLSRT 203 E++ + L RT Sbjct: 293 NERKRIALSLKRT 305 >gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725] gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726] gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725] gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726] Length = 487 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD V + + + Sbjct: 34 GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|118443423|ref|YP_878169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium novyi NT] gi|118133879|gb|ABK60923.1| rpsA [Clostridium novyi NT] Length = 634 Score = 42.0 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 73/180 (40%), Gaps = 18/180 (10%) Query: 22 IDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISL 81 I+R+ + ++ T +I ++ + + G I +R + + + L Sbjct: 372 IEREEAFKEIEEAF------NNKTTLNISIKESVKGGIIGRYRGVRI----FVPASHVEL 421 Query: 82 KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 D I+ VS ++ + ++++ ++QK + + + + FK ++ Sbjct: 422 FHVEDLSVYIEQEMTVSIIEFRVNRKGTKIVASRRNVLQKEQAKQEEEAWETFK--KDDV 479 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRG 195 + G +KR+ VD+ DG++ E + L G++VK I ++ +E + Sbjct: 480 VEGEIKRLTNFGAFVDINGIDGLLHVSEISWGRVEKPEDILSVGEKVKVCILNIDKEHKK 539 >gi|322792902|gb|EFZ16735.1| hypothetical protein SINV_14612 [Solenopsis invicta] Length = 555 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 41/136 (30%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA------IVTKVVLD 302 + VGA +G +GS ++ ++ + I D +PA VT V Sbjct: 339 NSVGAIIGTKGSHIRNII-RFSGASVKIAPLEQD---------KPAEQQTERKVTIVGSP 388 Query: 303 EDVGRI------------------------EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 E + E++VP Q+ IG+ GQNVR ++TG Sbjct: 389 ESQWKAQYLIFEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSV 448 Query: 339 IDIITEEEDSINRQKD 354 I + +E++ + ++ Sbjct: 449 IKL-SEQQATPPSAEE 463 >gi|320451273|ref|YP_004203369.1| DNA-directed RNA polymerase subunit alpha [Thermus scotoductus SA-01] gi|320151442|gb|ADW22820.1| DNA-directed RNA polymerase, subunit alpha [Thermus scotoductus SA-01] Length = 313 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E + + + E ++ + + + H L EG V L + + ++ +I G E + Sbjct: 237 EPASVERAEGEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERS 296 Query: 406 AVEIQGR 412 EI+ Sbjct: 297 LEEIREA 303 >gi|242050664|ref|XP_002463076.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor] gi|241926453|gb|EER99597.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor] Length = 344 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E+E+ + + + A++V L G VE +A ++ I+G E Sbjct: 19 EQEEVEHGPFPIEQLQASGIAALDV-----KKLKDSGLHTVEAVAYTPRKDLVQIKGISE 73 Query: 404 ETAVEIQGRARE 415 +I A + Sbjct: 74 AKVDKIIEAASK 85 >gi|116331858|ref|YP_801576.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125547|gb|ABJ76818.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 381 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSD-GVIRRDET-ISRE-----NLRPGDRVKSYIYDV 189 K G+I+ GT+ ++ + V L + G++ ET I + +PG+ + ++ +V Sbjct: 270 KEGDIVKGTIDSLKPFGLFVKLDDHFNGLVPARETGIPNRVPLTQSFKPGEVIDVFVMEV 329 Query: 190 RREQRGPQVLLS 201 E++ Q+ LS Sbjct: 330 NPEKK--QISLS 339 >gi|325118121|emb|CBZ53672.1| putative DNA repair protein [Neospora caninum Liverpool] Length = 353 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 11/59 (18%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR-----------AREYLEGID 421 LL G+ VE +A + + +I+G E+ +++ A+EYLE + Sbjct: 50 ELLKDGGYQTVECVAFAPVKNLVAIKGLSEQKVEKLKKASKELCNLGFCSAQEYLEARE 108 >gi|126729556|ref|ZP_01745369.1| hypothetical protein SSE37_03760 [Sagittula stellata E-37] gi|126709675|gb|EBA08728.1| hypothetical protein SSE37_03760 [Sagittula stellata E-37] Length = 234 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIP 441 VE++A A ++ A EI G A +L + G +++L ++ Sbjct: 128 ESVEDVAADAAETTAETVEAADDMAEEIVGVAPAFLSAPE----------GEADDLTTLM 177 Query: 442 GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 G+ K+ V L E GI +A + D++ N G + Sbjct: 178 GVGPKLAVTLNEAGIYHFSQIAEWTEDNVAWVDANIAGVRGR 219 >gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2] gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2] Length = 422 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G+++SGTV ++E+ V+VD+G S+GVI E E + GD +++ + + Sbjct: 33 EGDLVSGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDADPSELVSVGDPIEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKDGRLVLS 101 >gi|302697701|ref|XP_003038529.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8] gi|300112226|gb|EFJ03627.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8] Length = 339 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 ++EE++ + +Q + L G VE +A + +I+G Sbjct: 5 SQEEEAGEDYQLAGPLLVSKLQEAGIHANDIKKLAEAGLNTVEAVAFTPKKNLVTIKGIS 64 Query: 403 EETAVEIQGRARE 415 ++ A +I A++ Sbjct: 65 DQKADKILAEAQK 77 >gi|291301239|ref|YP_003512517.1| RNA binding S1 domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570459|gb|ADD43424.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM 44728] Length = 507 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD+V++ + ++ Sbjct: 44 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSTGDQVEALVL--QK 101 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 102 EDKEGRLILS 111 >gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] Length = 324 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L G+ VE +A S++A E TA ++ AR+ Sbjct: 6 LEDLPGVGATTAEKLREAGYGTVESVATATTSDLAEAAEIGEATAKKVILAARK 59 Score = 37.7 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 17/74 (22%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495 +L +PG+ + L E G T+E +A + DL + + Sbjct: 5 DLEDLPGVGATTAEKLREAGYGTVESVATATTSDLA-----------------EAAEIGE 47 Query: 496 DQVESMIIHARYKM 509 + +I+ AR Sbjct: 48 ATAKKVILAARKMA 61 >gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] Length = 672 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432 A L+AE F ++ LA E+ I + A ++ + E ++ + +++RE G Sbjct: 526 AAKLLAEHFGSIDRLAQATEEELTEIPEIGPKIAASVRA---FFAEPRNLEVIERLREAG 582 Query: 433 V 433 V Sbjct: 583 V 583 >gi|149928276|ref|ZP_01916519.1| 30S ribosomal protein S1 [Limnobacter sp. MED105] gi|149823005|gb|EDM82247.1| 30S ribosomal protein S1 [Limnobacter sp. MED105] Length = 567 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 19/121 (15%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD--RQYLEFKDKVGEIISGTVK 147 G V + +A+ + ++ I +++ D + D+ G +++GTVK Sbjct: 416 RFKKGDEVEALV-------LAIDTERERISLGIKQLSGDPFTVFASTNDR-GSMVNGTVK 467 Query: 148 RVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQVLL 200 V+ V+VDLG + +G +R E + R + GD V + + +V R+ R + L Sbjct: 468 SVDAKGVVVDLGDDIEGYLRASEISNDRVEDARNAYKEGDAVTAMVINVDRKAR--SIAL 525 Query: 201 S 201 S Sbjct: 526 S 526 >gi|112419535|dbj|BAF02935.1| RAD51 homolog [Populus nigra] Length = 342 Score = 42.0 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A E+ I+G E +I A + Sbjct: 31 LQASGIASLDVKKLKDAGLCTVESVAFSPRKELLQIKGISEAKVDKIIEAASK 83 >gi|323348906|gb|EGA83143.1| Rad51p [Saccharomyces cerevisiae Lalvin QA23] Length = 296 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEI-IAHL--LVAEGFADVEELACVKISEIASIEGFD 402 E + + ++ + V+ I +A + L G E +A ++ I+G Sbjct: 66 EMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGIS 125 Query: 403 EETAVEIQGRA 413 E A ++ A Sbjct: 126 EAKADKLLNEA 136 >gi|313679748|ref|YP_004057487.1| hypothetical protein Ocepr_0857 [Oceanithermus profundus DSM 14977] gi|313152463|gb|ADR36314.1| hypothetical protein Ocepr_0857 [Oceanithermus profundus DSM 14977] Length = 192 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 2/144 (1%) Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389 L L GW ++ + + R + + Q ++ DE L+ +EE A Sbjct: 7 LIGFLIGWVVEWLIDVAYWRPRLRSARAELETCRQQLD-DERERAKLLQAKIEALEEEAK 65 Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449 + + +EG + E + A L + + ++L I GI KI+ Sbjct: 66 GLRARLQRLEGERDRYRNE-RDAALAELRSFATEADRPGEAVSPGDDLKRIEGIGPKIER 124 Query: 450 ALGENGIKTMEDLAGCSVDDLLGW 473 L G++T E+LA V L Sbjct: 125 LLQRAGVRTFEELAATPVARLKEL 148 >gi|262195603|ref|YP_003266812.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365] gi|262078950|gb|ACY14919.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365] Length = 608 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 10/120 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ R+ D IG + + R + +++V+++K R A ++ Sbjct: 143 PGSQVDLRPVRNLD--AFIGQSYKFKVIKFNKKRGNIVLSRRVLLEKERAALKESTLERL 200 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ + G VK + +DLG DG++ + E + GD V+ + Sbjct: 201 K--EGQEVEGIVKNLTEYGAFIDLGGIDGLLHITDMSWGRVNHPSELFQVGDHVRVKVLK 258 >gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141] gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC 33035] gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141] gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC 33035] Length = 486 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E E + GD V + + + Sbjct: 34 GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 92 EDKEGRLILS 101 >gi|219669404|ref|YP_002459839.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Desulfitobacterium hafniense DCB-2] gi|219539664|gb|ACL21403.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfitobacterium hafniense DCB-2] Length = 661 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + R V S K I+Q+ + A+++ + G+++SG VKR+ VD+G Sbjct: 436 IEFDPAKRRVVLSQK-EILQEEQAAKKEHLLATL--QEGDVVSGVVKRLAQFGAFVDIGG 492 Query: 161 SDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 DG++ + E + GD V+ I V +EQ + Sbjct: 493 VDGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILKVDKEQGKISL 536 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G +++GTV ++ + V VDLG S+GVI E + + + GD++ + + V Sbjct: 298 GALVTGTVVKINHDEVFVDLGWKSEGVIALKELTVASDLQTSDIVAIGDQISAVVLRVEN 357 Query: 192 EQRGP 196 E+ P Sbjct: 358 EEGNP 362 >gi|315453859|ref|YP_004074129.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179] gi|315132911|emb|CBY83539.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179] Length = 556 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 135 KDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRP-GDRVKSYIYDVRRE 192 +D ++I G V R GN I+ D ++ ++ + ++ R + +P G +++ + +V E Sbjct: 115 QDYKDKVIEGKVVRENRGNYILADKEGAEYILPKSQSSLRRDSKPIGKHIRTCVTNVDPE 174 Query: 193 QRGPQVLLSR 202 +++SR Sbjct: 175 VG--SIVVSR 182 >gi|156370197|ref|XP_001628358.1| predicted protein [Nematostella vectensis] gi|156215332|gb|EDO36295.1| predicted protein [Nematostella vectensis] Length = 336 Score = 42.0 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 7/75 (9%) Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG---VSEELCSIPGIDSKI 447 +E + G ++ +I E+++ + +KIR+ +++EL + GI Sbjct: 55 DGAEARKLPGIGDKIGKKI----DEFIKTGKLEKLEKIRKDEGTSITKELTRVSGIGPAA 110 Query: 448 KVALGENGIKTMEDL 462 L E+G+ ++EDL Sbjct: 111 AKKLIEDGVSSLEDL 125 >gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2] Length = 495 Score = 41.6 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 115 KQVIIQKVREAER-----DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRD 168 KQV + + AE D F D G+I+ GTV +V+ V+VD+G ++GV+ Sbjct: 12 KQVAVNDIGTAEDFLAAVDETIKYFND--GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSR 69 Query: 169 ETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E E + GD +++ + ++E + +++LS Sbjct: 70 ELSIKHDVDPGEVVEVGDEIEALVL--QKEDKEGRLMLS 106 >gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera stadtmanae DSM 3091] gi|121731077|sp|Q2NE95|RADA_METST RecName: Full=DNA repair and recombination protein radA gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091] Length = 311 Score = 41.6 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 28/171 (16%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +V E A L GFAD+ LA E++ E A ++ AR+ Sbjct: 4 LEDLPSVGEKTAQKLRDAGFADMMRLATATPKELSVKVEIGEGVAAKVIEAARKA---EK 60 Query: 422 ITLQKKIRELGVSEELCSI----PGIDS---------KIKVALGENG-----------IK 457 I + + E++ I G+D I GE G + Sbjct: 61 IDFETAFEVMERREDVGRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVT 120 Query: 458 TMEDLAGCSVD-DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 T + +D +++ E+ + G ++V I AR Sbjct: 121 TQLPVEEGGLDGEVVFIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARA 171 >gi|170036665|ref|XP_001846183.1| igf2 mRNA binding protein [Culex quinquefasciatus] gi|167879496|gb|EDS42879.1| igf2 mRNA binding protein [Culex quinquefasciatus] Length = 520 Score = 41.6 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 40/121 (33%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDE-KIDIV-----VWSPDSAT 285 + VGA +G +GS ++ ++ E + E K+ IV W A Sbjct: 353 NAVGAIIGTKGSHIRNIIRFSGASVKIAPLEADKPLEQQTERKVTIVGTPEAQW---KAQ 409 Query: 286 FVINALRPAIVTKVV-------LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 ++I K+ D+ +E++VP Q+ IG+ GQNVR ++TG Sbjct: 410 YLI-------FEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSI 462 Query: 339 I 339 I Sbjct: 463 I 463 >gi|71024351|ref|XP_762405.1| hypothetical protein UM06258.1 [Ustilago maydis 521] gi|46101905|gb|EAK87138.1| hypothetical protein UM06258.1 [Ustilago maydis 521] Length = 950 Score = 41.6 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLFRL 65 + EKS++ + +L+ + ++ A + G + IRV I G I + Sbjct: 610 LEQEKSLEPESILAAIETALASGAPLENTEGQVKGIRVAI-RRDGLIRVTER 660 >gi|254172528|ref|ZP_04879203.1| DHH family protein [Thermococcus sp. AM4] gi|214033457|gb|EEB74284.1| DHH family protein [Thermococcus sp. AM4] Length = 741 Score = 41.6 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G + GT+ RVE V V L + G+I+R + + +PG+ + + DVR ++R Sbjct: 132 IGNVYKGTIDRVERFGVFVRLNPHVVGLIKRKDLLGGREYKPGEEILVQVLDVRPDKREI 191 Query: 197 QVLLS 201 ++ S Sbjct: 192 DLIES 196 >gi|116327529|ref|YP_797249.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120273|gb|ABJ78316.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 381 Score = 41.6 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSD-GVIRRDET-ISRE-----NLRPGDRVKSYIYDV 189 K G+I+ GT+ ++ + V L + G++ ET I + +PG+ + ++ +V Sbjct: 270 KEGDIVKGTIDSLKPFGLFVKLDDHFNGLVPARETGIPNRVPLTQSFKPGEVIDVFVMEV 329 Query: 190 RREQRGPQVLLS 201 E++ Q+ LS Sbjct: 330 NPEKK--QISLS 339 >gi|31747721|gb|AAO38350.1| Lfe154p1 [Leptospirillum ferrooxidans] Length = 369 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RD IG + + M+ R + +++V++++ R+ + K GE++ G V Sbjct: 3 RDMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALK--EGEVLEGIV 60 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + +DLG DG++ + ++ + GD++ + R+ Sbjct: 61 KNITDYGAFIDLGGIDGLLHITDMSWGRVSNPQDLMNVGDKLNVVVLKHDRDT 113 >gi|118355624|ref|XP_001011071.1| DNA repair protein RAD51 containing protein [Tetrahymena thermophila] gi|3237383|gb|AAC39117.1| Rad51 [Tetrahymena thermophila] gi|89292838|gb|EAR90826.1| DNA repair protein RAD51 containing protein [Tetrahymena thermophila SB210] Length = 331 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E + + ++ ++ ++ L+ GF VE ++ + I+G E Sbjct: 2 AEYAEDVEQSDGPMLIAKLEEHGINNADVKKLIDAGFQTVESISYTAKKNLLQIKGMTEA 61 Query: 405 TAVEIQGRA 413 +I A Sbjct: 62 KIDKILDVA 70 >gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f] gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f] Length = 492 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ G + +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 49 GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVL--QK 106 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 107 EDKEGRLILS 116 >gi|253681777|ref|ZP_04862574.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum D str. 1873] gi|253561489|gb|EES90941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum D str. 1873] Length = 633 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K E+I G ++R+ VD+ DG++ E + L+ G++VK +I D+ Sbjct: 474 KKDEVIEGEIRRLTSFGAFVDVNGIDGLLHVSEISWGRVEKPEDVLKVGEKVKVFILDID 533 Query: 191 REQRG 195 +E + Sbjct: 534 KENKK 538 >gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332] gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332] Length = 486 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+II GTV +V++ V++D+G ++GVI E E + GD+V++ + ++ Sbjct: 37 GDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVL--QK 94 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + ++LLS+ Q+ +E + +G+V Sbjct: 95 EDKEGRLLLSKKRAQYERAWSQIEEVKEADGVVT 128 >gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] Length = 671 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 E A L GF +EE+A + ++E + A + E+L + L +++ Sbjct: 508 SEGTAARLCRAGFGSLEEVADAGEEGLVAVEDIGPKVAASLV----EHLSRLRPEL-ERL 562 Query: 429 RELGVSEELCS 439 R GVS ++ Sbjct: 563 RAAGVSLDVLE 573 >gi|161350051|ref|YP_157511.2| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1] Length = 569 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D S G + +D R V +++ ++++ ER++ K G +I G V Sbjct: 151 KDTSPYEGKEFEFKVIKLDRKRNNVVVSRRAVLEETMGEEREKLLANLK--EGTVIKGIV 208 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L GD + + + +E+ Sbjct: 209 KNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLNVGDEIDAKVLKFDQEKN 262 >gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp. AL-21] gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp. AL-21] Length = 311 Score = 41.6 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE--- 418 + NV E A L GFAD+ LA E++ E A ++ AR+ + Sbjct: 4 LEELPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKSEQIDF 63 Query: 419 GIDITLQKKIRELG 432 + + ++ +++G Sbjct: 64 ETAMDVMERRKDVG 77 >gi|332025247|gb|EGI65421.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Acromyrmex echinatior] Length = 568 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 41/136 (30%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA------IVTKVVLD 302 + VGA +G +GS ++ ++ + I D +PA VT V Sbjct: 348 NSVGAIIGTKGSHIRNII-RFSGASVKIAPLEQD---------KPAEQQTERKVTIVGSP 397 Query: 303 EDVGRI------------------------EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 E + E++VP Q+ IG+ GQNVR ++TG Sbjct: 398 ESQWKAQYLIFEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSV 457 Query: 339 IDIITEEEDSINRQKD 354 I + +E++ + ++ Sbjct: 458 IKL-SEQQATPPSAEE 472 >gi|221107270|ref|XP_002166164.1| PREDICTED: similar to high density lipoprotein-binding protein vigilin, partial [Hydra magnipapillata] Length = 680 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 31/140 (22%) Query: 253 ACVGMRGSRVQAVVTELRDEKI---------DIVV---WSPDSATFVINALRPAIVTKVV 300 A +G G +Q+++ E D I DI+V D A + Sbjct: 449 AMIGPGGKLIQSIMNECGDVNIRFPSEDAKSDIIVIRGAKEDVEK--------AEIQLKK 500 Query: 301 L----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 L E+ EV E IG+ G N+R + TG I T+ +++ Sbjct: 501 LAEERQENNYTAEVTAKAEHHRFLIGKGGVNIRKVREKTGARIIFPTKNDENKELITIIG 560 Query: 357 ERTQFFMQAINVDEIIAHLL 376 +V+E A LL Sbjct: 561 T-------KESVEEAKADLL 573 >gi|115486271|ref|NP_001068279.1| Os11g0615800 [Oryza sativa Japonica Group] gi|18874069|dbj|BAB85490.1| Rad51 [Oryza sativa Japonica Group] gi|77551901|gb|ABA94698.1| DNA repair protein RAD51, putative, expressed [Oryza sativa Japonica Group] gi|113645501|dbj|BAF28642.1| Os11g0615800 [Oryza sativa Japonica Group] gi|218193367|gb|EEC75794.1| hypothetical protein OsI_12723 [Oryza sativa Indica Group] gi|222616333|gb|EEE52465.1| hypothetical protein OsJ_34631 [Oryza sativa Japonica Group] Length = 339 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 28 LQASGIAALDVKKLKDSGLYTVESVAYTPRKDLLQIKGISEAKVDKIVEAASK 80 >gi|18874071|dbj|BAB85491.1| Rad51 [Oryza sativa Japonica Group] gi|218186098|gb|EEC68525.1| hypothetical protein OsI_36814 [Oryza sativa Indica Group] Length = 339 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 28 LQASGIAALDVKKLKDSGLYTVESVAYTPRKDLLQIKGISEAKVDKIVEAASK 80 >gi|326336535|ref|ZP_08202705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691408|gb|EGD33377.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 585 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D ++ +F V V K +I + E +R+ Sbjct: 153 EAFLPGSQIDVKPIRDYDQFVNKTMEFKVVKINHEFKNVVVSH-KALIEADIEEQKREII 211 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ G VK + V VDLG DG+I + E L ++ Sbjct: 212 -GQLE--KGQVLEGVVKNITSYGVFVDLGGVDGLIHITDLSWSRINHPTEVLELDQKINV 268 Query: 185 YIYDVRREQRGPQV 198 I D + Q+ Sbjct: 269 VILDFDDNKSRIQL 282 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Query: 112 QSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE 169 Q QV K+ E ER F D + E++ GTV + I+D+ S+GVI +E Sbjct: 22 QGIDQVDQDKLDEFER-LVKDNFVDTQTDELVMGTVTHLTDREAIIDINAKSEGVISLNE 80 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 +L+ GD+V+ + DVR ++ G Q++LS Sbjct: 81 FRYNPSLKVGDKVEVLV-DVREDKTG-QLVLS 110 >gi|94497990|ref|ZP_01304554.1| ribosomal protein S1 [Sphingomonas sp. SKA58] gi|94422573|gb|EAT07610.1| ribosomal protein S1 [Sphingomonas sp. SKA58] Length = 570 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +DI + MD R + +++ I+++ R +R Sbjct: 140 PGSQVDIRPVRDVTPLMDIPQP--FQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQTL 197 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G+II G VK + VDLG DG++ + E + GD VK I Sbjct: 198 A--EGQIIEGVVKNITDYGAFVDLGGIDGLLHVTDLSYKRINHPNEMINIGDTVKVQIIR 255 Query: 189 VRREQ 193 + R+ Sbjct: 256 INRDT 260 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISREN--LRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E + + L+ GD V+ Y+ V Sbjct: 28 EGRVVKGTVTGIENDLAVIDVGLKSEGRVPLREFAMPGQKADLKVGDEVEVYVDRVENAH 87 Query: 194 RGPQVLLS--RTHPQFMVKLFHMEVPE 218 +LS R + E E Sbjct: 88 GEA--MLSRDRARREAAWDKLEAEFTE 112 >gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum str. IM2] gi|20139514|sp|Q8ZYR9|RADA_PYRAE RecName: Full=DNA repair and recombination protein radA gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum] Length = 333 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + E S + + + + L G+ V ++A + E+A I G Sbjct: 7 KADAEVSQTQATVEVRADVDVEELEGIGRVTGAKLKERGYYTVRDIAFASVKELAEIIG- 65 Query: 402 DEETAVEIQGRAREYL 417 +E+ A +I AR+ L Sbjct: 66 NEDRAQQIIEAARKML 81 Score = 37.7 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 18/91 (19%) Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 +++ + E+ ++ + GI L E G T+ D+A SV +L N Sbjct: 10 AEVSQTQATVEVRADVDVEELEGIGRVTGAKLKERGYYTVRDIAFASVKELAEIIGN--- 66 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 +D+ + +I AR +G Sbjct: 67 ---------------EDRAQQIIEAARKMLG 82 >gi|51247475|pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament gi|51247476|pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament gi|51247477|pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament gi|51247478|pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament gi|51247479|pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament gi|51247480|pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament Length = 321 Score = 41.6 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 363 MQAINVDEI-IAHL--LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + V+ I +A + L G E +A ++ I+G E A ++ A Sbjct: 4 IEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEA 57 >gi|330792068|ref|XP_003284112.1| hypothetical protein DICPUDRAFT_27081 [Dictyostelium purpureum] gi|325085926|gb|EGC39324.1| hypothetical protein DICPUDRAFT_27081 [Dictyostelium purpureum] Length = 1172 Score = 41.6 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 5/109 (4%) Query: 328 VRLASQLTGWTIDI-ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 V L + GW I++ + K ++ V + A L GF V+ Sbjct: 1059 VSLFCKKLGW-IELEHLVNLYTQRLDKGVKSEIIPLVEINGVKQARARALWNAGFKTVKS 1117 Query: 387 LACVKISEIA---SIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432 +A E+A ++ F E A I A + LE + K +E Sbjct: 1118 IAVCPPDELARKVNLGKFGEGQARNIIREAGKLLEKKAEEFRAKAKEFE 1166 >gi|297476040|ref|XP_002688448.1| PREDICTED: helicase, POLQ-like [Bos taurus] gi|296486374|gb|DAA28487.1| helicase, POLQ-like [Bos taurus] Length = 1137 Score = 41.6 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A +I A+ L Sbjct: 1049 LMEVTGVLEGRARQLYNAGYKSLTHLANANPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 1108 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1109 AEALQEEVEEL 1119 >gi|193603671|ref|XP_001948893.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Acyrthosiphon pisum] Length = 340 Score = 41.6 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 EE + ++D ++ + L G+ +E +A + +I+G E Sbjct: 10 EESVVEDHEEDDGPLLIAKLEGQGITSGDIKKLQEAGYHTIESIAFATKKHLITIKGISE 69 Query: 404 ETAVEIQGRARE 415 A +I A + Sbjct: 70 AKADKILAEASK 81 >gi|89895001|ref|YP_518488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Desulfitobacterium hafniense Y51] gi|89334449|dbj|BAE84044.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 661 Score = 41.6 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + R V S K I+Q+ + A+++ + G+++SG VKR+ VD+G Sbjct: 436 IEFDPAKRRVVLSQK-EILQEEQAAKKEHLLATL--QEGDVVSGVVKRLAQFGAFVDIGG 492 Query: 161 SDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 DG++ + E + GD V+ I V +EQ + Sbjct: 493 VDGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILKVDKEQGKISL 536 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G +++GTV ++ + V VDLG S+GVI E + + + GD++ + + V Sbjct: 298 GALVTGTVVKINHDEVFVDLGWKSEGVIALKELTVASDLQTSDIVAIGDKISAVVLRVEN 357 Query: 192 EQRGP 196 E+ P Sbjct: 358 EEGNP 362 >gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae ARSEF 23] Length = 1795 Score = 41.6 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 142 ISGTVKRVEYGNVIVD-LGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 + GT+ +++ + G G + E E+ R G V +I V EQR Sbjct: 639 VPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQR 698 Query: 195 GPQVLLSRTHPQ 206 ++++S P Sbjct: 699 --RLIVSCKDPG 708 Score = 36.6 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Query: 137 KVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIY 187 K G +++G V++VE ++VD ++ + ++ E + GD VK+ + Sbjct: 1290 KKGSVVTGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVL 1349 Query: 188 DVRREQR 194 +V +R Sbjct: 1350 EVDAVKR 1356 >gi|156541968|ref|XP_001599286.1| PREDICTED: similar to igf2 mRNA binding protein, putative [Nasonia vitripennis] Length = 598 Score = 41.6 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 41/136 (30%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA------IVTKVVLD 302 + VGA +G +GS ++ ++ + I D +PA VT V Sbjct: 370 NSVGAIIGTKGSHIRNII-RFSGASVKIAPLESD---------KPAEQQTERKVTIVGSP 419 Query: 303 EDVGRI------------------------EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 E + E++VP Q+ IG+ GQNVR ++TG Sbjct: 420 ESQWKAQYLIFEKMREEGFVSGTEDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSV 479 Query: 339 IDIITEEEDSINRQKD 354 I + +E++ + + Sbjct: 480 IKL-SEQQATPPTADE 494 >gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro] gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro] Length = 771 Score = 41.6 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Query: 415 EYLEGIDITLQKKIRELGVSE--ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 ++E +++ ++ + + + G+ L E GI ++E LA +L Sbjct: 669 NFIEWQKTQQEEQAQQPKKEKPKSIKDLEGVGKATAGKLEEAGITSVEALAEADPVELAK 728 Query: 473 WSENKGGNIEKF----DGFLSSLGTPKDQVESMI 502 + ++ + +G ++ G + S + Sbjct: 729 AIKTSVKRVKSWQVSCNGIVTVEGNSTAEGNSTV 762 >gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338] gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338] gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338] Length = 501 Score = 41.6 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 43 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVL--QK 100 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 101 EDKEGRLILS 110 >gi|119897363|ref|YP_932576.1| 30S ribosomal protein S1 [Azoarcus sp. BH72] gi|119669776|emb|CAL93689.1| 30S ribosomal protein S1 [Azoarcus sp. BH72] Length = 568 Score = 41.6 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D S G + +D R V +++ ++++ ER + K G ++ G V Sbjct: 150 KDTSPYEGKEYEFKVIKLDRKRNNVVVSRRAVLEESMGEERQKLLENLK--EGTVVKGVV 207 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L GD +++ + +E+ Sbjct: 208 KNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLNVGDEIEAKVLKFDQEKN 261 >gi|297617653|ref|YP_003702812.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophothermus lipocalidus DSM 12680] gi|297145490|gb|ADI02247.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophothermus lipocalidus DSM 12680] Length = 646 Score = 41.6 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 12/110 (10%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDL 158 + R Q + E ER R EF D G+I G VKR+ +DL Sbjct: 434 IEFNRNKRRGSQVVVSRKEVLIEEKERKR--KEFWDNIEEGQIRQGVVKRLTDYGAFIDL 491 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 +G++ E + L G ++ Y+ V RE+ +V LSR Sbjct: 492 DGYEGLLHISEMAHSRVEHPSQVLTEGSVIEVYVLGVDREKE--RVSLSR 539 Score = 40.0 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRR 191 G +++G V +V V+VD+ G S+GVI E ++E ++ GD ++ Y+ Sbjct: 297 GSVVTGVVIQVTDDEVMVDVGGKSEGVIPLRELSVRDVSSAKEVVKEGDTIEVYVLRWDD 356 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVP----EIYNGIV 224 + +LLS+ + +E E+ G V Sbjct: 357 DG---TILLSKKRVDMKKAMDRLEEAFRNGEVIEGTV 390 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 14/134 (10%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++S++ + G + + D + S K+V ++K + + Sbjct: 325 PLRELSVRDVSSAKEVVKEGDTIEVYVLRWDDDGTILLSKKRVDMKKAMDRLEEAF---- 380 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-----ENLRPGDRVKSYIYDV 189 + GE+I GTV + G ++VD+G + E G + + + Sbjct: 381 --RNGEVIEGTVLKSVKGGLLVDVGVV-AFLPASHVDQGFARNLEEY-VGQTLPVKVIEF 436 Query: 190 -RREQRGPQVLLSR 202 R ++RG QV++SR Sbjct: 437 NRNKRRGSQVVVSR 450 >gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19] gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri] gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19] Length = 984 Score = 41.6 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 5/147 (3%) Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLE 418 +F + V +A ++ D+E LA + E+A +EG EE A + ARE +E Sbjct: 622 KFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVE 681 Query: 419 GIDITLQKKIRELGVSEELCSI--PGIDSKIKVALGENG-IKTMEDLAGCS-VDDLLGWS 474 + +++ E E L G ++ G G + + + A S + ++ G Sbjct: 682 SRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIG 741 Query: 475 ENKGGNIEKFDGFLSSLGTPKDQVESM 501 + + L G + E + Sbjct: 742 DEAVARLVPGYKTLRDAGLTPAEAERV 768 >gi|148242687|ref|YP_001227844.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307] gi|147850997|emb|CAK28491.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307] Length = 397 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ + G DL G I R + EN G V +V + Sbjct: 209 EKEGKVVQVKITGFNRGGCTCDLEGLRGFIPRSQLNEGENHEALVGKTVGVAFLEVNPDT 268 Query: 194 RGPQVLLS 201 R +++LS Sbjct: 269 R--KLVLS 274 >gi|126277684|ref|XP_001370830.1| PREDICTED: similar to RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform 1 [Monodelphis domestica] Length = 339 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L G+ VE +A E+ +++G E A +I A Sbjct: 41 LEEAGYHTVEAVAYAPKKELINVKGISEAKADKILAEA 78 >gi|289620542|emb|CBI52903.1| putative RAD51 protein [Sordaria macrospora] Length = 353 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E+DS + + L+V GF VE +A + I+G E+ Sbjct: 14 EDDSGMPNPGAPTPLSALEGVAGLTKRDIQLIVDGGFNTVESVAYTPRRVLEQIKGISEQ 73 Query: 405 TAVEIQGRARE 415 A +I A + Sbjct: 74 KAGKILAEASK 84 >gi|255722349|ref|XP_002546109.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404] gi|240136598|gb|EER36151.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404] Length = 364 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L EGF +E +A + +++G E A +I A Sbjct: 48 LEGNGISASDIRKLKQEGFHTIESIAYTPKRHLMTVKGISENKAEKISAEA 98 >gi|110742988|dbj|BAE99388.1| RAD51 homolog [Arabidopsis thaliana] Length = 342 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Query: 346 EDSINRQKDFNERTQFF----MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++++ +Q D + F +QA + + L G VE +A ++ I+G Sbjct: 10 QNAVQQQDDEETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLLQIKGI 69 Query: 402 DEETAVEIQGRARE 415 + +I A + Sbjct: 70 SDAKVDKIVEAASK 83 >gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] Length = 663 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 E A L GF +E++A + + ++E + A + E+L + L +++ Sbjct: 501 SEGTAARLCRAGFGSLEDVAEAGVDGLVAVEDIGPKVAASLI----EHLTRLRPEL-ERL 555 Query: 429 RELGVSEELCS 439 R+ GVS ++ Sbjct: 556 RKAGVSLDVRE 566 >gi|18977049|ref|NP_578406.1| ski2-like helicase [Pyrococcus furiosus DSM 3638] gi|18202135|sp|O73946|HELS_PYRFU RecName: Full=Putative ski2-type helicase gi|223365750|pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 gi|223365751|pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1 gi|223365752|pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2 gi|223365753|pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2 gi|3374506|dbj|BAA32016.1| helicase [Pyrococcus furiosus] gi|18892686|gb|AAL80801.1| helicase [Pyrococcus furiosus DSM 3638] Length = 720 Score = 41.6 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 MQ V A L GF +E+++ + E+ IEG +T I Sbjct: 648 LMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAI 695 >gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1 [Janthinobacterium sp. Marseille] gi|151280774|gb|ABR89184.1| small subunit ribosomal protein S1 [Janthinobacterium sp. Marseille] Length = 571 Score = 41.6 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISREN-------LRPGDRVKSYIYDV 189 G +++GTVK VE ++ L +G +R E ISR+ L+ GD V++ + +V Sbjct: 462 KGALVTGTVKSVEPKGAVIQLSDEVEGYLRASE-ISRDRVEDAGTHLKVGDTVEAMVINV 520 Query: 190 RREQRGPQV 198 R+ RG Q+ Sbjct: 521 DRKARGIQL 529 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + +D R V +++ +I+ ER + K G I++G VK + Sbjct: 161 GKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERQKLMETLK--EGTIVTGVVKNITDYG 218 Query: 154 VIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ R E L G + + + +E+ Sbjct: 219 AFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKYDQEKN 265 >gi|110667807|ref|YP_657618.1| DNA repair and recombination protein radA [Haloquadratum walsbyi DSM 16790] gi|109625554|emb|CAJ51980.1| probable DNA repair and recombination protein radA [Haloquadratum walsbyi DSM 16790] Length = 520 Score = 41.6 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 V E A+ L GF +A E+ ++ TA +I AR + I Sbjct: 237 GVSETRANHLRTAGFETRSAVATASPHELTAVPSIGTNTAQQIHASARAVADEI 290 >gi|285018380|ref|YP_003376091.1| 30s ribosomal protein s1 [Xanthomonas albilineans GPE PC73] gi|283473598|emb|CBA16101.1| 30s ribosomal protein s1 [Xanthomonas albilineans] Length = 559 Score = 41.6 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDPS G + L +D R V +++ +++ ER++ + G I+ G V Sbjct: 143 RDPSCLDGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKLN--EGTILKGVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD + + RE+ Sbjct: 201 KNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERN 254 >gi|255712479|ref|XP_002552522.1| KLTH0C06842p [Lachancea thermotolerans] gi|238933901|emb|CAR22084.1| KLTH0C06842p [Lachancea thermotolerans] Length = 381 Score = 41.6 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 345 EEDSINRQKDFNERTQFFM--QAINVDEIIA---HLLVAEGFADVEELACVKISEIASIE 399 E+D + F+ + + V+ I A L G + +A ++ I+ Sbjct: 44 EQDREMAGDGEDVALVSFVPLERLQVNGITALDIKKLRENGLHTADAVAYAPRKDLLEIK 103 Query: 400 GFDEETAVEIQGRA 413 G E A + A Sbjct: 104 GISEAKADRLLNEA 117 >gi|307196422|gb|EFN78011.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Harpegnathos saltator] Length = 647 Score = 41.6 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 41/136 (30%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA------IVTKVVLD 302 + VGA +G +GS ++ ++ + I D +PA VT V Sbjct: 386 NSVGAIIGTKGSHIRNII-RFSGASVKIAPLEQD---------KPAEQQTERKVTIVGSP 435 Query: 303 EDVGRI------------------------EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 E + E++VP Q+ IG+ GQNVR ++TG Sbjct: 436 ESQWKAQYLIFEKMREEGYVSGTEDVRLTIEILVPSAQVGRIIGKGGQNVRELQRVTGSV 495 Query: 339 IDIITEEEDSINRQKD 354 I + +E++ + + Sbjct: 496 IKL-SEQQATPPSADE 510 >gi|39939960|ref|XP_359517.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15] gi|145010459|gb|EDJ95115.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15] Length = 1808 Score = 41.6 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 ++ L R + P + + A + + + +E + Sbjct: 590 EMHLADIRLQHPEKKFREGLKVKARVLSVDP-AKNQLRLTFKKTLVNSEAAPIKDFGEAS 648 Query: 138 VGEIISGTVKRVEYGNVIVD-LGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 VG+ + GT+ +++ V G G + E E+ R G V ++ V Sbjct: 649 VGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVD 708 Query: 191 REQRGPQVLLSRTHP 205 E+R ++++S P Sbjct: 709 PERR--RLVVSCKDP 721 >gi|328951208|ref|YP_004368543.1| DNA-directed RNA polymerase subunit alpha [Marinithermus hydrothermalis DSM 14884] gi|328451532|gb|AEB12433.1| DNA-directed RNA polymerase subunit alpha [Marinithermus hydrothermalis DSM 14884] Length = 317 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R + + + + H L EG +E L + E+ + G E + EI+ R E Sbjct: 253 RPALTLDDLGLSTRVLHNLKEEGIDSIENLLALTERELKKVPGIGERSVEEIKERLAE 310 >gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD] Length = 603 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K +D D + +F V V K +I + + +++ Sbjct: 170 EAFLPGSQIDVKPIKDYDQYVGKTMEFKVVKINPEFKNVVVSH-KALIEADIEDQKKEII 228 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 +K G+++ GTVK + V +DLG DG++ + E L G VK Sbjct: 229 AQ--LEK-GQVLEGTVKNITSYGVFIDLGGVDGLVHITDLSWSRVNHPTEILEDGQTVKV 285 Query: 185 YIYDVRREQRGPQV 198 I D ++ Q+ Sbjct: 286 VILDFDEDKTRIQL 299 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + L +V+ ISL R +P++ +G V + + + Q+ Sbjct: 74 VRLTDKEAIVDIDFKSEGVISLNEFR-YNPNLKVGDEVEVMVDRREDKTGQL----QLSH 128 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 +K R + + ++ + GE+++G VK G +IVD+ + + Sbjct: 129 KKARTLKAWDKVNQYHE-SGEVVNGFVKSRTKGGMIVDVFGIEAFLP 174 >gi|317495376|ref|ZP_07953745.1| S1 RNA binding domain-containing protein [Gemella moribillum M424] gi|316914435|gb|EFV35912.1| S1 RNA binding domain-containing protein [Gemella moribillum M424] Length = 404 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + +D + + ++VI+++ R + Y G++I G V R+ Sbjct: 164 VGQEYTFKIEEVDKDKNKIILNRRVILEEERAKKLAEVYGNIN--EGDVIEGKVSRITDF 221 Query: 153 NVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQ 193 ++LG DG++ E + L GD VK + V +E Sbjct: 222 GAFINLGEVDGLLHISEISHARVSKVSDVLAVGDVVKVAVISVDKEN 268 >gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] Length = 665 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A +A+ F D+EEL + + +I+ E+ A I L ++ + K Sbjct: 515 VGETVAKK-IAKSFTDIEELENADLERLINIDEIGEKIAQSIISYFANPL-NRELIERLK 572 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I L S + + G L I S D+ E GG Sbjct: 573 IAGLQFSRKEEDLSGYTD----KLVGQSIVISGVFTHHSRDEYKDLIEKNGGK 621 >gi|78222087|ref|YP_383834.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15] gi|78193342|gb|ABB31109.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15] Length = 586 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVKSYIYDVRRE 192 +VGE+++G V + V+VD+G S+G I DE + + ++ GD VK+ + Sbjct: 45 RVGEVVTGKVVHISNEFVLVDIGYKSEGCIAIDEFLDEDGNLTVKVGDEVKALFER-KEN 103 Query: 193 QRGPQVLLSR 202 Q+G +LSR Sbjct: 104 QKG-YAVLSR 112 >gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32] gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32] Length = 499 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 43 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVL--QK 100 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 101 EDKEGRLILS 110 >gi|167751224|ref|ZP_02423351.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702] gi|167655731|gb|EDR99860.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702] Length = 658 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 14/117 (11%) Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE---RDRQYLEFKDK--VGEIIS 143 + ++ +P F + V A+ ++ +R+A+ D +F + VG+ + Sbjct: 434 KDGKLEELLKKTVP---FKVIEVTEARGRVVGSIRQAKKEANDAAKAKFWENIEVGQKFT 490 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 G VK +E V VDLG DG++ E RE ++ GD++ Y+ E++ Sbjct: 491 GEVKSIESYGVFVDLGGVDGMVHSSELTWNRIKHPREIVKIGDKLDVYVKSFDPEKK 547 >gi|171184588|ref|YP_001793507.1| DEAD/DEAH box helicase domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170933800|gb|ACB39061.1| DEAD/DEAH box helicase domain protein [Thermoproteus neutrophilus V24Sta] Length = 729 Score = 41.6 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI-NVDEIIAHLLVAEGFADVEE 386 +LA L G E + E + A+ V + A L G+ V++ Sbjct: 637 AKLAGML-GLEEHRRGLEVVTARVIYGVREELLELVTALRGVGRVRARALYNFGYRTVKD 695 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAR 414 LA + EIAS+ GF E A I +AR Sbjct: 696 LAKASVREIASLPGFGERLAESIIEQAR 723 >gi|228473973|ref|ZP_04058714.1| 30S ribosomal protein S1 [Capnocytophaga gingivalis ATCC 33624] gi|228274487|gb|EEK13328.1| 30S ribosomal protein S1 [Capnocytophaga gingivalis ATCC 33624] Length = 585 Score = 41.6 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D ++ +F V V K +I + E +R+ Sbjct: 153 EAFLPGSQIDVKPIRDYDQFVNKTMEFKVVKINHEFKNVVVSH-KALIEADIEEQKREII 211 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ G VK + V VDLG DG+I + E L ++ Sbjct: 212 -GQLE--KGQVLEGIVKNITSYGVFVDLGGVDGLIHITDLSWSRINHPTEVLELDQKINV 268 Query: 185 YIYDVRREQRGPQV 198 I D + Q+ Sbjct: 269 VILDFDDNKSRIQL 282 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Query: 112 QSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE 169 Q QV K+ E ER F D + E++ GTV + I+D+ S+GVI +E Sbjct: 22 QGIDQVDKDKLNEFER-LVKDNFVDTQADELVIGTVTHLTDREAIIDINAKSEGVISLNE 80 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 NL+ GD+V+ + D+R ++ G Q++LS Sbjct: 81 FRYNPNLKVGDKVEVLV-DIREDKTG-QLVLS 110 >gi|291286532|ref|YP_003503348.1| hypothetical protein Dacet_0596 [Denitrovibrio acetiphilus DSM 12809] gi|290883692|gb|ADD67392.1| hypothetical protein Dacet_0596 [Denitrovibrio acetiphilus DSM 12809] Length = 227 Score = 41.6 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 31/191 (16%) Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 + + + S ++ F + ++ G V+ V NV Sbjct: 58 DGIEREIVLKKHDVTTLASILNTEYFNFGNHRKEIYLKSFMN---SLVKGEVREVSAENV 114 Query: 155 I--VDLG---NSDGVIRRDETIS--RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 + V LG GV+ + R + G ++S + + LS T + Sbjct: 115 LLNVYLGVNYRVTGVLHKMHITPKMRGTFQIGQEIRSLVIGTEKLADDVVFTLSLTSRKL 174 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 + KLF V+ V R G R+ + S + I RG+ ++++ Sbjct: 175 VEKLFE-------EQGYSVRCVHRIVGGRS---IIQSTNHI--------PRGT-IKSLSD 215 Query: 268 ELRDEKIDIVV 278 EL E+I I+ Sbjct: 216 ELS-ERI-IIE 224 >gi|18420327|ref|NP_568402.1| ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding [Arabidopsis thaliana] gi|55976288|sp|P94102|RAD51_ARATH RecName: Full=DNA repair protein RAD51 homolog 1; AltName: Full=Rad51-like protein 1; Short=AtRAD51 gi|1706947|gb|AAB37762.1| RAD51 homolog [Arabidopsis thaliana] gi|1706949|gb|AAC49555.1| AtRAD51 [Arabidopsis thaliana] gi|2388778|emb|CAA04529.1| Rad51-like protein [Arabidopsis thaliana] gi|332005514|gb|AED92897.1| DNA repair protein RAD51-like 1 [Arabidopsis thaliana] Length = 342 Score = 41.6 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Query: 346 EDSINRQKDFNERTQFF----MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++++ +Q D + F +QA + + L G VE +A ++ I+G Sbjct: 10 QNAVQQQDDEETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLLQIKGI 69 Query: 402 DEETAVEIQGRARE 415 + +I A + Sbjct: 70 SDAKVDKIVEAASK 83 >gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa 102] Length = 1796 Score = 41.2 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 142 ISGTVKRVEYGNVIVD-LGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 + GT+ +++ + G G + E E+ R G V +I V EQR Sbjct: 641 VPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQR 700 Query: 195 GPQVLLSRTHPQ 206 ++++S P Sbjct: 701 --RLIVSCKDPG 710 Score = 36.6 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%) Query: 137 KVGEIISGTVKRVE--YGNVIVDL-GNSDGVIRRDETI------SRENLRPGDRVKSYIY 187 K G +++G V++VE ++VD N G+ R E + + + GD VK+ + Sbjct: 1293 KEGSVVTGKVRKVEEFGAFILVDNSNNVSGLCHRSEMADEAVKDATKLYKEGDAVKALVL 1352 Query: 188 DVRREQR 194 +V +R Sbjct: 1353 EVDAVKR 1359 >gi|15644630|ref|NP_229244.1| ribosomal protein S1 [Thermotoga maritima MSB8] Length = 543 Score = 41.2 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 10/106 (9%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + + V +++G V + V+L +G + E E L+ G Sbjct: 349 WENIEDRYN--VNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIG 406 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPE-IYNGIV 224 ++VK I + +E R + + RT + P+ I +G + Sbjct: 407 EKVKVKILKIDKENRKITLSIKRTQENPWERALKELKPDSIVSGTI 452 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 14/115 (12%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKV---REAERDRQYLEF--KDKVGEIISGTVKRVEYGN 153 DP+P + + ++ A+ ++ R A +D++ EF + KVG+I+ GTVK + Sbjct: 141 DPMPEKEIEVIILEMAQTRRGPRIVVSRRALQDKKIEEFFSEKKVGDIVEGTVKGISNAG 200 Query: 154 VIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 V V++ G I R E + ++PG + + I ++ + ++ V+LS Sbjct: 201 VEVEISEGVRGFIPRSELSYDTRISPEDIVKPGQNITAKIIELDKVKKN--VILS 253 Score = 37.0 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 127 RDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISR-ENLRPGDR 181 D +++ + G+I+ G V E V+VD G S+G + +E I + + G+ Sbjct: 7 NDEILSQYEPEEFRRGQIVKGVVIGKEDDGVVVDFGGKSEGFVPENELIKSLDEYKVGEN 66 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 + I ++ E+R +LS P L + Sbjct: 67 LTLQILNLNYEERS---ILSERRPVLRKTLEEL 96 >gi|319792457|ref|YP_004154097.1| ribosomal protein s1 [Variovorax paradoxus EPS] gi|315594920|gb|ADU35986.1| ribosomal protein S1 [Variovorax paradoxus EPS] Length = 562 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+I++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQIVTGKVKTVDARGAEIDLGEDILGYLRASEISRDRVEDARNVLKEGDEVTAIVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|163814142|ref|ZP_02205534.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759] gi|158450591|gb|EDP27586.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759] Length = 649 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 82/185 (44%), Gaps = 22/185 (11%) Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--------EEVENYTCQISLKV 83 S+ + + + ++ ++E E+G+I ++++VV +E + + Sbjct: 365 EGSVLLSYKRVAAEKANEKLEAALESGEILTGKVVQVVSGGLNVMYDETRVFIPASLVSD 424 Query: 84 ARDRDPSIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEII 142 +++ + V L R + + KQ+I+ + EA ++ + + +VG + Sbjct: 425 TYEKNLDKYLDQDVEFILTEYQPKKRRIIGNRKQIIVARKAEAAKE-LFD--RIEVGMTV 481 Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGP 196 G VK V +DLG +DG++ E + L+ GD+VK++I ++ G Sbjct: 482 EGVVKNVTSFGAFIDLGGADGLLHISEMSWGRVEDPKSVLKVGDKVKAFIKNID----GE 537 Query: 197 QVLLS 201 ++ LS Sbjct: 538 KIALS 542 >gi|313205786|ref|YP_004044963.1| SSU ribosomal protein s1p [Riemerella anatipestifer DSM 15868] gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer DSM 15868] gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM] Length = 593 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K +D D + +F V V K +I + + +++ Sbjct: 160 EAFLPGSQIDVKPIKDYDQYVGKTMEFKVVKINPEFKNVVVSH-KALIEADIEDQKKEII 218 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 +K G+++ GTVK + V +DLG DG++ + E L G VK Sbjct: 219 AQ--LEK-GQVLEGTVKNITSYGVFIDLGGVDGLVHITDLSWSRVNHPTEILEDGQTVKV 275 Query: 185 YIYDVRREQRGPQV 198 I D ++ Q+ Sbjct: 276 VILDFDEDKTRIQL 289 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + L +V+ ISL R +P++ +G V + + + Q+ Sbjct: 64 VRLTDKEAIVDIDFKSEGVISLNEFR-YNPNLKVGDEVEVMVDRREDKTGQL----QLSH 118 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 +K R + + ++ + GE+++G VK G +IVD+ + + Sbjct: 119 KKARTLKAWDKVNQYHE-SGEVVNGFVKSRTKGGMIVDVFGIEAFLP 164 >gi|242069171|ref|XP_002449862.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor] gi|241935705|gb|EES08850.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor] Length = 340 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE +A ++ I+G E +I A + Sbjct: 26 LQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLVQIKGISEAKVDKIIEAASK 78 >gi|296434521|sp|Q8TDG4|HELQ_HUMAN RecName: Full=Helicase POLQ-like; AltName: Full=Mus308-like helicase; AltName: Full=POLQ-like helicase Length = 1101 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis SK119] gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis SK119] Length = 698 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + I + RD Sbjct: 521 EVIEEALEQARQGRLAIMDHMLQTIDQPRSELSAYAPKV-------EIMHIKPEKIRDVI 573 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G + + + Q +I + RE + +VG++ Sbjct: 574 GPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQEMINRAREIINEITRE---AEVGQVYH 630 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 VKR+E V+L + IS++ L+ GD ++ I ++ ++ R Sbjct: 631 AKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVEDVLKIGDTIEVKITEIDKQGR 688 >gi|222100022|ref|YP_002534590.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359] gi|221572412|gb|ACM23224.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359] Length = 539 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 8/116 (6%) Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG-TVK 147 IG ++ + +++ + S K+ I +K E R Y E G+ + V Sbjct: 56 DDYKIGEELTLQILNLNYEERSTLSEKRPIFRKTMEELRK-LYEE-----GKPVKARIVS 109 Query: 148 RVEYGNVIVDLGNSDGVIRRDE-TISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + + G +V G + + RE P + ++ I D+ +RG ++++SR Sbjct: 110 QAKGGYNVVLKGVVPAFLPGSHSLLKREEPFPREEIEVLILDMAHTRRGTRIVVSR 165 >gi|195978853|ref|YP_002124097.1| polynucleotide phosphorylase/polyadenylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226702690|sp|B4U573|PNP_STREM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|195975558|gb|ACG63084.1| polyribonucleotide nucleotidyltransferase PnpA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 714 Score = 41.2 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 36/185 (19%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINP------------ETGDISLFRLLEVVEEVENYT 76 ++ +++ +A ++ + + I I +T I + ++ V+ + Sbjct: 520 QILEEALAQAKKARFEILDLIEATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETI 579 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + D + + + A+ AK++I VREA Sbjct: 580 DKIIAETGVKIDIDEEGN------VSIYSSDQDAINRAKEIIASLVREA----------- 622 Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 KVGE+ V R+E V+L +D ++ E + L G+ V + V Sbjct: 623 KVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRTANVSDVLEIGEEVDVKVIKV 682 Query: 190 RREQR 194 + R Sbjct: 683 DDKGR 687 >gi|53757751|gb|AAU92042.1| polyphosphate kinase [Methylococcus capsulatus str. Bath] Length = 785 Score = 41.2 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 31/90 (34%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E + + + + + +L G VEELA + + I G + Sbjct: 2 ETVEGNRTEKEGGRLVISKVKGISKSTRIMLAEHGIFSVEELADADVGRLTKIPGLSRQK 61 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSE 435 A+ + A+ + ++ + G +E Sbjct: 62 ALRMVRAAKFMVGDMEKGRDEVSAGTGSAE 91 >gi|332819388|ref|XP_003310356.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Pan troglodytes] Length = 1101 Score = 41.2 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|119626340|gb|EAX05935.1| DNA helicase HEL308, isoform CRA_b [Homo sapiens] Length = 1144 Score = 41.2 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1056 LMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEK 1115 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1116 AEALQEEVEEL 1126 >gi|226355432|ref|YP_002785172.1| 30S ribosomal protein S1 [Deinococcus deserti VCD115] gi|226317422|gb|ACO45418.1| putative ribosomal protein S1 [Deinococcus deserti VCD115] Length = 576 Score = 41.2 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 15/87 (17%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRD---------ETISRENLRPGDRVKSYIYD 188 G+I+ GT+ + + VD+G +GVI + E E + GD +++Y+ Sbjct: 61 GDIVDGTIVFIGQDGIAVDIGAKVEGVIPLNQIGDEPVTLEQAQ-EMYKAGDTIEAYVVR 119 Query: 189 VRREQRGPQVLLS--RTHPQFMVKLFH 213 V Q++LS R ++ Sbjct: 120 VDLPNS--QIVLSKKRADQDKGWRVLE 144 >gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis subsp. hominis C80] gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis subsp. hominis C80] Length = 698 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + I + RD Sbjct: 521 EVIEEALEQARQGRLAIMDHMLQTIDQPRSELSAYAPKV-------EIMHIKPEKIRDVI 573 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G + + + Q +I + RE + +VG++ Sbjct: 574 GPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQEMINRAREIINEITRE---AEVGQVYH 630 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 VKR+E V+L + IS++ L+ GD ++ I ++ ++ R Sbjct: 631 AKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVEDVLKIGDTIEVKITEIDKQGR 688 >gi|251778389|ref|ZP_04821309.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082704|gb|EES48594.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 635 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 15/165 (9%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI +K +D+ I+ V + V ++++V+++ ++E E ++ + Sbjct: 418 PASQIDVKFTKDKSKYINQVLEVKL-IDYSTEEHKKVIASRRVLLEVIKETEEEKIWESL 476 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 +G++I VKR +D+ DG++ + + L+ G+ ++ I Sbjct: 477 N--IGDVIKAEVKRFTKFGAFLDVNGIDGLLHLSQISWNHVKNIEDILKKGEMIEVKIIA 534 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY-NGIVQVKAVSRD 232 + +E + ++ LSR + + K + V E Y G V + V R Sbjct: 535 LDKENK--KLSLSRK--ELLPKPWEN-VKEKYPEGSVVLGKVVRI 574 >gi|110556640|ref|NP_598375.2| helicase POLQ-like [Homo sapiens] gi|119626339|gb|EAX05934.1| DNA helicase HEL308, isoform CRA_a [Homo sapiens] gi|146327581|gb|AAI41525.1| Helicase, POLQ-like [synthetic construct] Length = 1101 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|19110782|gb|AAL85274.1|AF436845_1 DNA helicase HEL308 [Homo sapiens] Length = 1101 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|86605910|ref|YP_474673.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab] gi|86554452|gb|ABC99410.1| putative ribosomal protein S1 [Synechococcus sp. JA-3-3Ab] Length = 304 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 123 REAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--P 178 R R + E +K G+ ++ V G V+VD+ G I R RENL Sbjct: 101 RRLRLKRLWEELAEKQTNGQTVTALVIGTNKGGVLVDVQGLRGFIPRSHLNQRENLEELV 160 Query: 179 GDRVKSYIYDVRREQRGPQVLLS 201 G + + + +V +++LS Sbjct: 161 GQSLTASLLEVNPAAN--KLVLS 181 >gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] Length = 699 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 22/178 (12%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD-R 87 V+ +++++A + M + I+ ++S + V T I RD Sbjct: 521 EVIEEALEQARQGRLAIMDHMLQTIDAPRKELSAYAPKVV-------TMHIKPDKIRDVI 573 Query: 88 DPSI----DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 P +I L G + + + Q +I + +E + +VG++ Sbjct: 574 GPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQEMIDRAKEIIEEITRE---AEVGQVYH 630 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 VKR+E V+L + IS++ L GD ++ I ++ ++ R Sbjct: 631 AKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVEDVLNIGDTIEVKITEIDKQGR 688 >gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243] gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1] gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239] gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16] gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243] gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1] gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239] gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16] Length = 489 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G++++GTV +V+ V++D+G ++GVI E E ++ GD +++ + ++ Sbjct: 37 GDLVTGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVL--QK 94 Query: 192 EQRGPQVLLS 201 E + ++LLS Sbjct: 95 EDKEGRLLLS 104 >gi|225871265|ref|YP_002747212.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. equi 4047] gi|254782736|sp|C0M913|PNP_STRE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225700669|emb|CAW95251.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. equi 4047] Length = 714 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 36/185 (19%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINP------------ETGDISLFRLLEVVEEVENYT 76 ++ +++ +A ++ + + I I +T I + ++ V+ + Sbjct: 520 QILEEALAQAKKARFEILDLIEATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETI 579 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + D + + + A+ AK++I VREA Sbjct: 580 DKIIAETGVKIDIDEEGN------VSIYSSDQDAINRAKEIIASLVREA----------- 622 Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 KVGE+ V R+E V+L +D ++ E + L G+ V + V Sbjct: 623 KVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRTTNVSDVLEIGEEVDVKVIKV 682 Query: 190 RREQR 194 + R Sbjct: 683 DDKGR 687 >gi|198420224|ref|XP_002126934.1| PREDICTED: similar to RAD51 homolog isoform 1 [Ciona intestinalis] Length = 338 Score = 41.2 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + L G+ VE LA E+ ++G E A +I A Sbjct: 27 LEQSGISAGDIKKLKEHGYHTVEALAYAPKKELIGVKGISEAKADKIIIEA 77 >gi|109074228|ref|XP_001104832.1| PREDICTED: helicase, POLQ-like [Macaca mulatta] Length = 1101 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRARQLYSAGYKSLMHLANANPEVLIKTIDHLSRRQAKQIIASAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|225867825|ref|YP_002743773.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. zooepidemicus] gi|259534159|sp|C0MFB1|PNP_STRS7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225701101|emb|CAW97943.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 714 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 36/185 (19%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINP------------ETGDISLFRLLEVVEEVENYT 76 ++ +++ +A ++ + + I I +T I + ++ V+ + Sbjct: 520 QILEEALAQAKKARFEILDLIEATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETI 579 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + D + + + A+ AK++I VREA Sbjct: 580 DKIIAETGVKIDIDEEGN------VSIYSSDQDAINRAKEIIASLVREA----------- 622 Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 KVGE+ V R+E V+L +D ++ E + L G+ V + V Sbjct: 623 KVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRTANVSDVLEIGEEVDVKVIKV 682 Query: 190 RREQR 194 + R Sbjct: 683 DDKGR 687 >gi|294656166|ref|XP_458414.2| DEHA2C16698p [Debaryomyces hansenii CBS767] gi|199430910|emb|CAG86496.2| DEHA2C16698p [Debaryomyces hansenii] Length = 350 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Query: 343 TEEEDSINRQKDFNERTQFFMQAI---NVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 T E ++ ++ ++ + + L AEG+ +E +A + ++ Sbjct: 10 TNEHEASMGDEEDGLSGPLLIEQLEGNGITSGDIRKLKAEGYHTIESIAYTPKKALLLVK 69 Query: 400 GFDEETAVEI-QGRAR 414 G E A +I A+ Sbjct: 70 GISEAKADKISLEAAK 85 >gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1] gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1] Length = 689 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 V + A LL F VEELA ++++ ++G EE A +Q Sbjct: 537 VGSVNAQLLADR-FKSVEELATATVADLCGVDGIGEEIAQAVQE 579 >gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis thaliana] Length = 157 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 23/117 (19%) Query: 95 GVVSDPLPPMDFGRVAVQSAKQVI-IQKVREAERDRQYLE------FKDKVGEIISGTVK 147 S D G + + + I K++E + Q+ FK GEI+ G V Sbjct: 17 EAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVH 76 Query: 148 RVEYGNVIVDLGNSDGV------IRRDETISREN----------LRPGDRVKSYIYD 188 +V V + G + + + E I EN ++ G RV+ + D Sbjct: 77 KVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQIGARVRFVVLD 133 >gi|310779520|ref|YP_003967853.1| RNA binding S1 domain protein [Ilyobacter polytropus DSM 2926] gi|309748843|gb|ADO83505.1| RNA binding S1 domain protein [Ilyobacter polytropus DSM 2926] Length = 536 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 + + G V L + +++ I E ++ F++K +I+ G Sbjct: 57 EELEGYEEGDEVEILLMGETKDGDFLIGSRRKID---MEENWEKLVKAFENK--DIVKGK 111 Query: 146 VKRVEYGNVIVDLGNSDGVIRRD-ETIS---RENLRPGDRVKSYIYDVRREQRGPQVLLS 201 + + G +V++ + I + G ++ I DV+ ++RG ++L+S Sbjct: 112 IAKRVKGGYVVNILFQQAFLPNSLSEIPMKDGDKF-VGSDIEVMIKDVKEDRRGKKILVS 170 >gi|300864909|ref|ZP_07109753.1| hypothetical protein OSCI_1150003 [Oscillatoria sp. PCC 6506] gi|300337080|emb|CBN54903.1| hypothetical protein OSCI_1150003 [Oscillatoria sp. PCC 6506] Length = 374 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRD--ETISREN----LRPGDRVKSYIY 187 +VG+I+ GTV+ ++ + VD+G ++ + E + GD +++ I Sbjct: 266 RVGQIVDGTVRGIKTYGLFVDIGGYHALLHISAISQMPVEQLDRIFKHGDWIRAMIV 322 >gi|218294782|ref|ZP_03495636.1| DNA-directed RNA polymerase, alpha subunit [Thermus aquaticus Y51MC23] gi|218244690|gb|EED11214.1| DNA-directed RNA polymerase, alpha subunit [Thermus aquaticus Y51MC23] Length = 314 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E +++ E ++ + + + H L EG V L + + ++ +I G Sbjct: 235 TPEVSKGEKRESAEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIG 294 Query: 403 EETAVEI-QGRAREYLEGID 421 E + EI Q A++ + Sbjct: 295 ERSLEEIRQALAKKGFTLKE 314 >gi|12230594|sp|Q9KWU8|RPOA_THEAQ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha gi|21466003|pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution gi|21466004|pdb|1L9U|B Chain B, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution gi|21466009|pdb|1L9U|J Chain J, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution gi|21466010|pdb|1L9U|K Chain K, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution gi|21466016|pdb|1L9Z|A Chain A, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction Promoter Dna Complex At 6.5 A Resolution gi|21466017|pdb|1L9Z|B Chain B, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction Promoter Dna Complex At 6.5 A Resolution gi|62738680|pdb|1YNJ|A Chain A, Taq Rna Polymerase-Sorangicin Complex gi|62738681|pdb|1YNJ|B Chain B, Taq Rna Polymerase-Sorangicin Complex gi|62738686|pdb|1YNN|A Chain A, Taq Rna Polymerase-Rifampicin Complex gi|62738687|pdb|1YNN|B Chain B, Taq Rna Polymerase-Rifampicin Complex gi|109157854|pdb|2GHO|A Chain A, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies gi|109157855|pdb|2GHO|B Chain B, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies gi|7573271|emb|CAB65464.2| RNA polymerase, alpha subunit [Thermus aquaticus] Length = 314 Score = 41.2 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E +++ E ++ + + + H L EG V L + + ++ +I G Sbjct: 235 TPEVSKGEKRESAEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIG 294 Query: 403 EETAVEI-QGRAREYLEGID 421 E + EI Q A++ + Sbjct: 295 ERSLEEIRQALAKKGFTLKE 314 >gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus] Length = 320 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIP 441 +EE+A + + G + A +I E+L + +++ E+ +P Sbjct: 44 IEEIAKKGKEALLELPGIGPDLADKIL----EFLATGRVKKDEELSGKVPRGVLEVMEVP 99 Query: 442 GIDSKIKVALGEN-GIKTMEDLAG 464 G+ K L E GI ++E L Sbjct: 100 GVGPKTARGLYEALGIDSLEKLKE 123 >gi|13096176|pdb|1HQM|A Chain A, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information gi|13096177|pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 313 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E +++ E ++ + + + H L EG V L + + ++ +I G Sbjct: 234 TPEVSKGEKRESAEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIG 293 Query: 403 EETAVEI-QGRAREYLEGID 421 E + EI Q A++ + Sbjct: 294 ERSLEEIRQALAKKGFTLKE 313 >gi|321466793|gb|EFX77786.1| hypothetical protein DAPPUDRAFT_320958 [Daphnia pulex] Length = 968 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ +V + A +L GF + ++A E+ S ++ + +A+++ A+ + Sbjct: 869 LMELPSVGKGRARMLFKAGFRTLTDVAKTNPEELVSRVDHLPKRSALQMIAAAKVLVYEK 928 Query: 421 DITLQKKIRELGVSEELCSI 440 L+++ ++ L + Sbjct: 929 ADALREE------ADSLLEL 942 >gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511] gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511] Length = 657 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 23/113 (20%) Query: 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI- 420 M + E I L G DVE+L +K ++ +EGF E+ A ++ A E +G Sbjct: 438 MNIDGLGEKIVQQLYDAGLVKDVEDLYHLKKEDLLKLEGFGEKKAEKLLE-AIEASKGRE 496 Query: 421 --------------DITLQKKIRELGVS------EELCSIPGIDSKIKVALGE 453 ++ +K + G+ E L SI G ++ + E Sbjct: 497 CWRFVNALGIEHIGEVASKKICEKFGLDFIHADKEALLSIEGFGEEMANSFLE 549 >gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis M23590] gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis M23590] Length = 698 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-EVVEEVENYTCQISLKVARDR 87 V+ +++++A + M + I+ ++S + E++ + + + Sbjct: 521 EVIEEALEQARKGRLAIMDHMLQTIDHPRAELSAYAPKVEIMHINPDKIRDVIGPGGKKI 580 Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 + +I L G + + + Q +I + +E +VG+I VK Sbjct: 581 N---EIIDETGVKLDIEQDGTIYIGAVDQAMINRSKEIIEAITRE---AEVGQIYDAKVK 634 Query: 148 RVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 R+E V++ + + IS++ L+ GD +K I ++ ++ R Sbjct: 635 RIEKYGAFVEIFSGKDALLHISQISKDRINKVEDVLKIGDTIKVKITEIDKQGR 688 >gi|307565521|ref|ZP_07628002.1| 30S ribosomal protein S1 [Prevotella amnii CRIS 21A-A] gi|307345775|gb|EFN91131.1| 30S ribosomal protein S1 [Prevotella amnii CRIS 21A-A] Length = 593 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%) Query: 129 RQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 + Y + +K +++ GTV V+ V+V++G SDG+I E L+ GD+V+ + Sbjct: 33 KVYDDTLNKIQENQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRYNPELKAGDKVEVF 92 Query: 186 IYDVRREQRGPQVLLS 201 + + ++RG Q++LS Sbjct: 93 VES-QEDKRG-QLVLS 106 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI + RD D + +G + + ++ V + + +I+ EA+R Sbjct: 149 EAFLPGSQIDVHPIRDYD--VFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEI 206 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+I+ GTVK + V +DLG DG+I + E + +++K Sbjct: 207 ISHLE--KGQILEGTVKNITTYGVFIDLGGVDGLIHITDLSWGRVSDPHEVVTLDEKIKV 264 Query: 185 YIYDVRREQR 194 I D E++ Sbjct: 265 VILDFDEEKK 274 >gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093] gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093] Length = 495 Score = 41.2 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ G V +V++ V++D+G ++GVI E E + GD +++ + V + Sbjct: 36 GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01] gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN] gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US] gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US] gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1] gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1] gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01] gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN] gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US] gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US] gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1] gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1] Length = 402 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER+ + + + VG+++ G V R+ +D+G DG++ E Sbjct: 176 HKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKL--AVFSSDSSIDP 250 E+ +GI + VS P K+ +V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDP 342 >gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] Length = 698 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-EVVEEVENYTCQISLKVARDR 87 V+ +++++A + M + I+ ++S + E++ + + + Sbjct: 521 EVIEEALEQARKGRLAIMDHMLQTIDHPRAELSAYAPKVEIMHINPDKIRDVIGPGGKKI 580 Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 + +I L G + + + Q +I + +E +VG+I VK Sbjct: 581 N---EIIDETGVKLDIEQDGTIYIGAVDQAMINRSKEIIEAITRE---AEVGQIYDAKVK 634 Query: 148 RVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 R+E V++ + + IS++ L+ GD +K I ++ ++ R Sbjct: 635 RIEKYGAFVEIFSGKDALLHISQISKDRINKVEDVLKIGDTIKVKITEIDKQGR 688 >gi|282878652|ref|ZP_06287421.1| 30S ribosomal protein S1 [Prevotella buccalis ATCC 35310] gi|281299197|gb|EFA91597.1| 30S ribosomal protein S1 [Prevotella buccalis ATCC 35310] Length = 591 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%) Query: 131 YLEFKDKVGE--IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E +KV E + GTV ++ VIVD+G SDG+I E +L+ GD+V+ Y+ Sbjct: 35 YDETLNKVSERQVTEGTVIALDKKEVIVDIGYKSDGIIPASEFRYNPDLKIGDKVEVYVE 94 Query: 188 DVRREQRGPQVLLSRTHPQFMV 209 +E + Q++LS + Sbjct: 95 --NQEDKKGQLVLSHKKARLTK 114 >gi|219851924|ref|YP_002466356.1| DNA topoisomerase type IA central domain protein [Methanosphaerula palustris E1-9c] gi|219546183|gb|ACL16633.1| DNA topoisomerase type IA central domain protein [Methanosphaerula palustris E1-9c] Length = 938 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 47/190 (24%) Query: 328 VRLASQLTG-WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 VRL ++ + W I + + ++ E I L V E Sbjct: 647 VRLIAKGSRPWDI--------GCPLCHHIESNQETMVLIPSMTEEILGRLQQHHIYTVHE 698 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI------ 440 +A +AS A EI A E+L+ + + L + EL Sbjct: 699 VADAPPEALAS--------AAEISSTAAEHLKS---EGEAVLGLLRLRSELRKFVRKQVP 747 Query: 441 --PGIDSKIKVA-LGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 G + L NGI T+ DLA + L + G + + Sbjct: 748 PRRGRSHAKIMKHLHANGINTIADLA------------------KADPTLLRTAGVGEKE 789 Query: 498 VESMIIHARY 507 V S+++ A+ Sbjct: 790 VTSLLMQAKE 799 >gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1 [Herminiimonas arsenicoxydans] gi|133739645|emb|CAL62696.1| 30S ribosomal subunit protein S1 [Herminiimonas arsenicoxydans] Length = 559 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISREN-------LRPGDRVKSYIYDV 189 G +++GTVK VE ++ L +G +R E ISR+ L+ GD V++ + +V Sbjct: 449 KGALVTGTVKSVEPKGAVIQLSEEVEGYLRASE-ISRDRVEDAGTHLKVGDTVEAMVINV 507 Query: 190 RREQRGPQV 198 R+ RG Q+ Sbjct: 508 DRKARGIQL 516 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + +D R V +++ +I+ ER + K G +++G VK + Sbjct: 148 GKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERQKLMETLK--EGTVVTGIVKNITDYG 205 Query: 154 VIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ R E L G + + + +E+ Sbjct: 206 AFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKYDQEKN 252 >gi|221102981|ref|XP_002169171.1| PREDICTED: similar to DNA repair protein RAD51 homolog A [Hydra magnipapillata] Length = 336 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 21/66 (31%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + D ++ + L GF VE LA + +++G E Sbjct: 8 QHEEEDTDDGGPILVSKLEQHGISASDIKKLSEAGFYTVESLAYTPKKTLLAVKGISEAK 67 Query: 406 AVEIQG 411 A +I Sbjct: 68 ADKILS 73 >gi|217032275|ref|ZP_03437772.1| hypothetical protein HPB128_142g23 [Helicobacter pylori B128] gi|216946041|gb|EEC24654.1| hypothetical protein HPB128_142g23 [Helicobacter pylori B128] Length = 551 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 73 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 120 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 121 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 177 >gi|217967761|ref|YP_002353267.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724] gi|217336860|gb|ACK42653.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724] Length = 552 Score = 41.2 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 20/162 (12%) Query: 84 ARDRD------PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 A++ D P I V + ++ + + + + I++K +E ER + + K+ Sbjct: 134 AKEIDIPPINSPKYYINRRVEGKIKKINPEKKQLIISVREILEKKQEEERANLWEKIKN- 192 Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 +I+ G + +++ + VDLG G + +DE R GD VK+ I + Sbjct: 193 -SQIVRGKIIKIDDEKITVDLGLGITGEVEKDEISWFPIRNIRRYYSVGDIVKAKILSLN 251 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPE--IYNGIVQVKAVS 230 + + ++ + +T P +F + PE I G ++ ++ Sbjct: 252 EDSKTAKLSIKQTQPNP-WSVFKEKYPEGSIVEG--EIIKIA 290 Score = 37.0 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 17/136 (12%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 +IS + + IG V + + + S KQV D Sbjct: 305 PVSEISWGRPSNIKNELKIGDKVRLKVLNIDEINKKIFLSMKQVEPN-----PWDVIDKN 359 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRD----ETISR--ENLRPGDRVKSYI 186 +K +G+I+SG + + + +++ +G+I + E + E + GD ++ I Sbjct: 360 YK--IGDIVSGKITNITEFGIFIEIKPGLEGLIPKKFLSWERTNDLFEKFKIGDTLEVKI 417 Query: 187 YDVRREQRGPQVLLSR 202 D+ +E + ++ LSR Sbjct: 418 IDLDKENK--KLTLSR 431 >gi|308162262|gb|EFO64669.1| Hypothetical protein GLP15_1509 [Giardia lamblia P15] Length = 195 Score = 41.2 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 24/104 (23%) Query: 330 LASQLTGWTIDIIT--EEEDSINRQKDFNERTQFFMQAINVD-------EIIAHLLVAEG 380 LA++L+ ++ + E + ++ + ++N+ E + H+L+A G Sbjct: 89 LAAKLS---FNVFPYWDHEQAAYAIQELQRFSHGSECSLNITSRTCQGPERVLHILLAAG 145 Query: 381 ------------FADVEELACVKISEIASIEGFDEETAVEIQGR 412 F + ++ + EIAS+ GF EETA + R Sbjct: 146 LSKPKIRSLCEHFKTLRDICTSSVKEIASLPGFSEETAATLLRR 189 >gi|115610811|ref|XP_788683.2| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus] gi|115941481|ref|XP_001181485.1| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus] Length = 335 Score = 41.2 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 ++F ++A + L G VE +A E+ +++G E A Sbjct: 8 AEQEVSEEFGPLGISRLEASGISSNDVKKLEEAGMHTVESVAYSTKKELCAVKGISEAKA 67 Query: 407 VEIQGRARE 415 +I A++ Sbjct: 68 DKILTEAQK 76 >gi|14278481|pdb|1I6V|A Chain A, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex gi|14278482|pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 314 Score = 41.2 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T E +++ E ++ + + + H L EG V L + + ++ +I G Sbjct: 235 TPEVSKGEKRESAEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIG 294 Query: 403 EETAVEI-QGRAREYLEGID 421 E + EI Q A++ + Sbjct: 295 ERSLEEIRQALAKKGFTLKE 314 >gi|260587822|ref|ZP_05853735.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia hansenii DSM 20583] gi|331083824|ref|ZP_08332933.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542087|gb|EEX22656.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia hansenii DSM 20583] gi|330403249|gb|EGG82809.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium 6_1_63FAA] Length = 361 Score = 41.2 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 30/164 (18%) Query: 61 SLFRLLEV----VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-------------PP 103 F EV V +V + + ++ AR P+ + L Sbjct: 102 EAFENKEVLTAKVNQVLDGGLSVIVEEARVFIPASLVSDTYEKDLTKYQDQEIEFVITEF 161 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 R + KQ+++ K +E + + + G+++ GT+K V +DLG +DG Sbjct: 162 NPRRRRVIGDRKQLLVAK-KEEMKKELFE--RIHAGDVVEGTIKNVTDFGAFIDLGGADG 218 Query: 164 VIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 ++ E ++ + G+++ I ++ G ++ LS Sbjct: 219 LLHISEMSWGRVENPKKVFKAGEKITVLIKEI----NGDKIALS 258 >gi|219854068|ref|YP_002471190.1| hypothetical protein CKR_0725 [Clostridium kluyveri NBRC 12016] gi|219567792|dbj|BAH05776.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 317 Score = 41.2 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+ I G V R+ V VDLG +G++ E E + GD++K Y+ ++ + Sbjct: 122 KGDKIEGRVSRITNFGVFVDLGGVEGLVHISELSWKKIKDPSEVVSVGDKLKVYVLNLNQ 181 Query: 192 EQRGPQVLLSRT 203 ++ + + RT Sbjct: 182 DRNRISLSIKRT 193 >gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016] gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112] gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23] gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3] gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A] gi|300910087|ref|ZP_07127547.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112] gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A] gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016] gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112] gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23] gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3] gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A] gi|300892735|gb|EFK86095.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112] gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A] Length = 416 Score = 41.2 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + IIQ E ++ + E + G+++ G V R+ Sbjct: 159 GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQP--GDVVEGKVARMTNFG 216 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG DG++ E + L G VK + V E+ Sbjct: 217 AFIDLGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPER 262 >gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 484 Score = 41.2 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 36 GDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVSVGDEIEALVQ--QK 93 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 94 EDKEGRLILS 103 >gi|291563829|emb|CBL42645.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4] Length = 359 Score = 41.2 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-------------PPMDFGRVAVQSAK 115 V +V + + + AR P+ + V L R + K Sbjct: 114 VSQVLDGGLSVIVDEARIFIPASLVSDVYEKDLSKYADKEIEFVITEFNPRRRRVIGDRK 173 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI---- 171 Q+I+ K + + + K VG+ + GTVK V +DLG +DG++ E Sbjct: 174 QLIVAK-KAEMQKALFE--KIHVGDKVEGTVKNVTDFGAFIDLGGADGLLHISEMSWGRI 230 Query: 172 --SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + GD+V + I D+ G ++ LS P+ Sbjct: 231 ENPKKVFKVGDKVTALIKDI----NGEKIALSMKFPE 263 >gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017] gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017] Length = 495 Score = 41.2 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 42 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVL--QK 99 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 100 EDKEGRLILS 109 >gi|160872757|ref|ZP_02062889.1| ribosomal protein S1 [Rickettsiella grylli] gi|159121556|gb|EDP46894.1| ribosomal protein S1 [Rickettsiella grylli] Length = 522 Score = 41.2 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RD SI G + + +D R + +++ +++ +A R++ E + G++I G V Sbjct: 142 RDSSIIEGKDLEFKVIKLDPKRNNIVLSRRAVLESEGQAGREQLLTELE--EGQVIKGIV 199 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + +DLG DG++ + E L GD ++ + + RE+ Sbjct: 200 KNLADYGAFIDLGGIDGLLHVTDISWKRVKQPSEVLNIGDEIEVVVLKIERER 252 >gi|88657606|ref|YP_507222.1| 30S ribosomal protein S1 [Ehrlichia chaffeensis str. Arkansas] gi|88599063|gb|ABD44532.1| putative ribosomal protein S1 [Ehrlichia chaffeensis str. Arkansas] Length = 567 Score = 41.2 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 126 ERDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR---P 178 E EF D K G+II GT+ ++ G V +D G S+ ++ E ++ + Sbjct: 44 EFQHALKEFIDDSVKEGQIIEGTIICIDKGYVTIDSGLKSESIVSLKEFELGDDYQNISI 103 Query: 179 GDRVKSYIYDVRREQRGPQVLLSR 202 G +VK Y+ + E R V+LSR Sbjct: 104 GSKVKLYLEKI--EGRNGSVVLSR 125 >gi|68171776|ref|ZP_00545121.1| RNA binding S1 [Ehrlichia chaffeensis str. Sapulpa] gi|67998801|gb|EAM85508.1| RNA binding S1 [Ehrlichia chaffeensis str. Sapulpa] Length = 567 Score = 41.2 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 126 ERDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR---P 178 E EF D K G+II GT+ ++ G V +D G S+ ++ E ++ + Sbjct: 44 EFQHALKEFIDDSVKEGQIIEGTIICIDKGYVTIDSGLKSESIVSLKEFELGDDYQNISI 103 Query: 179 GDRVKSYIYDVRREQRGPQVLLSR 202 G +VK Y+ + E R V+LSR Sbjct: 104 GSKVKLYLEKI--EGRNGSVVLSR 125 >gi|325857413|ref|ZP_08172468.1| 30S ribosomal protein S1 [Prevotella denticola CRIS 18C-A] gi|327314246|ref|YP_004329683.1| 30S ribosomal protein S1 [Prevotella denticola F0289] gi|325483123|gb|EGC86103.1| 30S ribosomal protein S1 [Prevotella denticola CRIS 18C-A] gi|326945157|gb|AEA21042.1| 30S ribosomal protein S1 [Prevotella denticola F0289] Length = 593 Score = 41.2 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 + +++ GTV ++ V+V++G SDG+I E +L+ GD+V+ Y+ +E + Sbjct: 46 QEHQVVEGTVISIDKKEVVVNIGYKSDGIIPASEFRYNPDLKVGDKVEVYVE--NQEDKC 103 Query: 196 PQVLLS 201 Q++LS Sbjct: 104 GQLVLS 109 >gi|297569509|ref|YP_003690853.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2] gi|296925424|gb|ADH86234.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2] Length = 568 Score = 41.2 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 18/129 (13%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII----QKVREAERDRQ 130 QI L+ RD D IG + + R V +++ I+ QK+RE R Sbjct: 139 PYSQIDLRPVRDLD--AMIGESYDFKILKYNRRRNNVVISRRAIMEEERQKLREEMRTSL 196 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G++++G+V + V VDLG DG+ + + + GD ++ Sbjct: 197 ------EEGQVLTGSVTNITDYGVFVDLGGMDGLCHITDLSWGRVSHPSKMYKVGDEIQV 250 Query: 185 YIYDVRREQ 193 I +E Sbjct: 251 KILKYDKEN 259 >gi|238924000|ref|YP_002937516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|238875675|gb|ACR75382.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|291524741|emb|CBK90328.1| Ribosomal protein S1 [Eubacterium rectale DSM 17629] gi|291528938|emb|CBK94524.1| Ribosomal protein S1 [Eubacterium rectale M104/1] Length = 371 Score = 41.2 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + ++D + + + D + + ++V++ + + +++ VG+ Sbjct: 138 VSDTYEKDLNKFKDQEIEFIITEFDPRKRRIIGNRKVLLVEQKAKQQEELLANL--HVGD 195 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 +I GTVK V +DLG DG++ E ++ G V+ ++ ++ Sbjct: 196 VIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFTVGQTVRVFVKNI----N 251 Query: 195 GPQVLLS 201 G ++ LS Sbjct: 252 GSKIALS 258 >gi|85116816|ref|XP_965126.1| DNA repair protein RAD51 [Neurospora crassa OR74A] gi|2182133|dbj|BAA20366.1| MEI3 [Neurospora crassa] gi|28926929|gb|EAA35890.1| DNA repair protein RAD51 [Neurospora crassa OR74A] Length = 353 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E+DS + + L+V GF VE +A + I+G E+ Sbjct: 14 EDDSGIPNPGAPTPLSALEGVAGLTKRDIQLIVDGGFNTVESVAYTPRRVLEQIKGISEQ 73 Query: 405 TAVEIQGRARE 415 A +I A + Sbjct: 74 KAGKILAEASK 84 >gi|313159195|gb|EFR58568.1| ribosomal protein S1 [Alistipes sp. HGB5] Length = 630 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE++ GTV + V+V++G S+GVI E +L GD+++ Y+ + Sbjct: 64 VGEVVEGTVTGITKREVLVNIGYKSEGVIPVSEFRYNPDLAVGDKIEVYVESAEDKNG-- 121 Query: 197 QVLLS 201 Q+ LS Sbjct: 122 QLALS 126 >gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547] gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547] Length = 492 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 33 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEVVVVGDTVEALVL--QK 90 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 91 EDKEGRLILS 100 >gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552] gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552] Length = 710 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 38/208 (18%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80 I ++++ +A + K AR M+++ IN ++S + V+ ++ T QI Sbjct: 517 GITKEILQEALAQA--KVARR--EIMANMMAVINEPRKELSPYAPK--VQMIKIGTDQIK 570 Query: 81 ---LKVARDRDPSIDIGGVVSDPLPPM------DFGRVAVQSAKQVIIQKVREAERDRQY 131 + + + I+ V + + A+ A +I + V+ Sbjct: 571 SVIGQGGKTINEIIEQSDGVKIDIEQDGTVIVYHHDQEAINKAIALIEKIVK-------- 622 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVI----RRDETISR--ENLRPGDRVKS 184 K KVGE+ G V RVE V+L +D + E I + + ++ GD +K Sbjct: 623 ---KAKVGEVYDGKVVRVEDNYAFVNLFEGTDAFLHISDYNHERIKKMSDVVKLGDILKV 679 Query: 185 YIYDVRREQRGPQVLLSRTH--PQFMVK 210 + V + + V +SR P+ + K Sbjct: 680 KVTKVDDKGK---VNVSRKALLPKPVKK 704 >gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118] gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118] Length = 399 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 17/133 (12%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + P D + ++ ++Q REA+R + G+++ G V R+ +DL Sbjct: 166 VEIEPSDNRLILS---RKELVQAEREAKRQAVMEKLVA--GDVVEGKVARLTNFGAFIDL 220 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 G DG++ E + L+ G VK + V E+ + + +T P+ + Sbjct: 221 GGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQ-- 278 Query: 213 HMEVPE-IYNGIV 224 VPE + G V Sbjct: 279 ---VPEQVAEGDV 288 >gi|39997656|ref|NP_953607.1| hypothetical protein GSU2561 [Geobacter sulfurreducens PCA] gi|39984548|gb|AAR35934.1| conserved domain protein [Geobacter sulfurreducens PCA] gi|298506597|gb|ADI85320.1| conserved hypothetical protein [Geobacter sulfurreducens KN400] Length = 174 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + + + + E++A L G E++A + +I+G + + V I +A Sbjct: 1 MTDVQKELQKIRGIGEVLAKRLAEAGHDTFEKIAAAGEEGLRAIKGMNPRSVVSIVAQAA 60 Query: 415 EYLEGIDITLQKKIRELGVS 434 E +G +++ EL + Sbjct: 61 ELAKGKAEDRARRVEELKAA 80 >gi|15791243|ref|NP_281067.1| DNA repair and recombination protein RadA [Halobacterium sp. NRC-1] gi|10581871|gb|AAG20547.1| DNA repair protein [Halobacterium sp. NRC-1] Length = 386 Score = 41.2 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + V A L GF + LA +E+++ E TA ++ ARE + Sbjct: 49 LEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAAD 105 >gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] Length = 705 Score = 41.2 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 18/143 (12%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V +A LL E F ++ LA + +IA I G + A + + ++ + ++ Sbjct: 551 VGANVAELLAQE-FGSIQALATAPVEKIAEIPGIGPKIAESVHE---FFSIPENVAVIER 606 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIK-----TMEDLA-GCSVDDLLGWSENKGGNI 481 +R+ GV + ++++ L G+ T+E + L G++ Sbjct: 607 LRQAGV---VLEEEKTENELPQTLA--GLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGSV 661 Query: 482 EKFDGFL---SSLGTPKDQVESM 501 K F+ + G+ + ES+ Sbjct: 662 SKKTSFVVAGEAAGSKLTKAESL 684 >gi|254447274|ref|ZP_05060741.1| ribosomal protein S1 [gamma proteobacterium HTCC5015] gi|198263413|gb|EDY87691.1| ribosomal protein S1 [gamma proteobacterium HTCC5015] Length = 557 Score = 41.2 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RD + G + + MD R V +++ +++ + ER+ G I++G V Sbjct: 142 RDTAYLEGKTLEFKVIKMDRKRNNVVVSRRAVVETMYSEEREELLNNLT--EGAIVTGVV 199 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + +DLG DG++ + E + GD ++ + RE+ Sbjct: 200 KNLTDYGAFLDLGGIDGLLHITDMAWKRVHHPSEVVAVGDEIQVVVLKFDREK 252 >gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN] gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN] Length = 409 Score = 41.2 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + I++K E + + E G+++ G V R+ Sbjct: 158 GQELEFKIIEIEPSENRLILSHKEIVKKEHEEAAKKIFSELAA--GDVVEGKVARMTNFG 215 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG DG++ E + L G VK + +V E+ Sbjct: 216 AFIDLGGVDGLVHVSEISYDHVDKPSDVLEVGQDVKVKVLNVDPER 261 >gi|47210458|emb|CAF94327.1| unnamed protein product [Tetraodon nigroviridis] Length = 969 Score = 41.2 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ LA + ++ IE ++ A +I AR + Sbjct: 891 LMEVAGVLESRAKQLYNAGYKTPSHLASADPAVLSKTIENLYKKQAHQIVASARMLVNEK 950 Query: 421 DITLQKKIREL 431 LQ+++ +L Sbjct: 951 AAALQEEVDDL 961 >gi|239814621|ref|YP_002943531.1| 30S ribosomal protein S1 [Variovorax paradoxus S110] gi|239801198|gb|ACS18265.1| ribosomal protein S1 [Variovorax paradoxus S110] Length = 562 Score = 41.2 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+I++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQIVTGKVKTVDARGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVTAIVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|55379507|ref|YP_137357.1| DNA repair and recombination protein RadA [Haloarcula marismortui ATCC 43049] gi|55232232|gb|AAV47651.1| DNA repair and recombination protein RadA [Haloarcula marismortui ATCC 43049] Length = 351 Score = 41.2 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + V A L G+ + +A E+++ E +A +I ARE Sbjct: 4 SASEDLEELPGVGPATAEKLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREA 63 Query: 417 LE 418 + Sbjct: 64 AD 65 >gi|328874880|gb|EGG23245.1| hypothetical protein DFA_05377 [Dictyostelium fasciculatum] Length = 822 Score = 40.8 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 22/171 (12%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 ++G + P + + K +E Y + + G+I+ GT+K V Sbjct: 533 KFNVGSELHVPCRVKHVDYLDAMV---TLTTKKKEIG-KTIYSYYDLQPGQILDGTIKFV 588 Query: 150 EYGNVIVDL-GNSDGVIRRDE----TI--SRENLRPGDRVKSYIYDVRREQRGPQVLL-- 200 ++ + + N GV+ I RE G ++ I V E++ + L Sbjct: 589 RDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKP 648 Query: 201 SRTH---PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 S H P K +V EI G + SR R + F I Sbjct: 649 SLVHSTLPILSSKA-ACKVGEIAQGFI-----SRIEDERIHVTFFGDVHGI 693 >gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] Length = 688 Score = 40.8 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + A +L AE F +E +A + I G E A I R + +K Sbjct: 522 VGQKTAKIL-AEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN---PKTREIIEK 577 Query: 428 IRELGV--SEELCSIP---GIDSKIKVAL 451 +++ GV E + + G+ + L Sbjct: 578 LKKAGVKLEERVMKLDILKGLTFAVTGTL 606 >gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4] gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4] Length = 497 Score = 40.8 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 43 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVL--QK 100 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 101 EDKEGRLILS 110 >gi|225019196|ref|ZP_03708388.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum DSM 5476] gi|224948048|gb|EEG29257.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum DSM 5476] Length = 663 Score = 40.8 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 82/206 (39%), Gaps = 46/206 (22%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF--KDKV 138 L R + + V + ++ R ++ + ++ + ++A+ + EF ++ Sbjct: 423 LSDRRVENAEEFLKKEVEFKIIEVNPSRKRAVASVRALLNEAKKAKAE----EFWASVEI 478 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 G+ +GTVK + VDLG DG+I E + ++ GD V+ Y+ D+ +E Sbjct: 479 GKTYTGTVKSLTDYGAFVDLGGVDGMIHITELSWTKIKHPSDIVKVGDVVEVYVKDIDQE 538 Query: 193 QRGPQV--------------------------LLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 ++ + ++S T QF F +P + +G++ + Sbjct: 539 KKKISLGYRKSEDNPWEIFKKDYAVDQVVNVTIVSLT--QFGA--FAEIIPGV-DGLIHI 593 Query: 227 KAVSRDPGSRAKLA-VFSSDSSIDPV 251 ++ AK++ V S +D Sbjct: 594 SQIANQ--HIAKVSDVLSVGQKVDAK 617 >gi|153953445|ref|YP_001394210.1| 30S ribosomal protein S1 [Clostridium kluyveri DSM 555] gi|146346326|gb|EDK32862.1| 30S ribosomal protein S1 [Clostridium kluyveri DSM 555] Length = 314 Score = 40.8 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+ I G V R+ V VDLG +G++ E E + GD++K Y+ ++ + Sbjct: 119 KGDKIEGRVSRITNFGVFVDLGGVEGLVHISELSWKKIKDPSEVVSVGDKLKVYVLNLNQ 178 Query: 192 EQRGPQVLLSRT 203 ++ + + RT Sbjct: 179 DRNRISLSIKRT 190 >gi|123968121|ref|YP_001008979.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus marinus str. AS9601] gi|123198231|gb|ABM69872.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus marinus str. AS9601] Length = 401 Score = 40.8 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PG 179 + ++ K GE+I+ + G + D+ G I R + ++ + G Sbjct: 202 ILRQSWEKVSN--SAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVG 259 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +K +V E R +++LS + KL +E+ ++ G V Sbjct: 260 KNLKVAFLEVNPESR--KLVLSEKKASLVSKLTSLELGQLIEGEV 302 >gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741] gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741] gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713] Length = 397 Score = 40.8 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 17/133 (12%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + P D + ++ ++Q REA+R + G+++ G V R+ +DL Sbjct: 164 VEIEPSDNRLILS---RKELVQAEREAKRQAVMEKLVA--GDVVEGKVARLTNFGAFIDL 218 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 G DG++ E + L+ G VK + V E+ + + +T P+ + Sbjct: 219 GGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQ-- 276 Query: 213 HMEVPE-IYNGIV 224 VPE + G V Sbjct: 277 ---VPEQVAEGDV 286 >gi|51860136|gb|AAU11318.1| DNA polymerase beta [Xiphophorus maculatus] gi|51860138|gb|AAU11319.1| DNA polymerase beta [Xiphophorus maculatus] Length = 337 Score = 40.8 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 E ++G + A +I E+L+ + +KIR S L + GI Sbjct: 57 EEAKKLDGVGAKIAEKI----DEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAAR 112 Query: 450 ALGENGIKTMEDL 462 E G+KT++DL Sbjct: 113 KFVEEGVKTLDDL 125 >gi|253699629|ref|YP_003020818.1| 30S ribosomal protein S1 [Geobacter sp. M21] gi|251774479|gb|ACT17060.1| ribosomal protein S1 [Geobacter sp. M21] Length = 584 Score = 40.8 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I++G VK + VDLG DG++ + E ++ GD + + Sbjct: 215 KEGDIVNGVVKNIAEYGAFVDLGGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNVMVLKYD 274 Query: 191 REQRGPQVLLSRTHPQ 206 RE+ + L +T P Sbjct: 275 REKGKISLGLKQTVPD 290 >gi|197119621|ref|YP_002140048.1| 30S ribosomal protein S1 [Geobacter bemidjiensis Bem] gi|197088981|gb|ACH40252.1| ribosomal protein S1 [Geobacter bemidjiensis Bem] Length = 584 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I++G VK + VDLG DG++ + E ++ GD + + Sbjct: 215 KEGDIVNGVVKNIAEYGAFVDLGGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNVMVLKYD 274 Query: 191 REQRGPQVLLSRTHPQ 206 RE+ + L +T P Sbjct: 275 REKGKISLGLKQTVPD 290 >gi|313672062|ref|YP_004050173.1| RNA binding s1 domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938818|gb|ADR18010.1| RNA binding S1 domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 572 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 16/127 (12%) Query: 82 KVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + D + +G V + KQ+ +E D+ Y VG+ Sbjct: 412 EEVSDLNERFKVGDEVEAKILTIDPEKERIALGIKQLEKNPWKEI--DKLYP-----VGK 464 Query: 141 IISGTVKRVEYGNVIVDLGN-SDGVIRRDE-----TISRENLRPGDRVKSYIYDVRREQR 194 ++ V VE ++V+L G+I E + E + GD VK+ + + + Sbjct: 465 VVEAVVDSVEKDQLVVNLTKGIKGIIPIKEVDEGKSNLSEQFKHGDVVKATVIKTDVKTK 524 Query: 195 GPQVLLS 201 ++LLS Sbjct: 525 --KILLS 529 >gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305] gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105] gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305] gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105] Length = 493 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV ++++ V++D+G ++GVI E + + GD +++ + V + Sbjct: 36 GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGDTIEALV--VTK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 94 EDKEGRLILSKKRAQYERAWGDVEKIKEADGVVE 127 >gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] Length = 688 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + A +L AE F +E +A + I G E A I R + +K Sbjct: 522 VGQKTAKIL-AEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN---PKTREIIEK 577 Query: 428 IRELGV--SEELCSIP---GIDSKIKVAL 451 +++ GV E + + G+ + L Sbjct: 578 LKKAGVKLEERVMKLDILKGLTFAVTGTL 606 >gi|301165923|emb|CBW25496.1| 30s ribosomal protein S1 [Bacteriovorax marinus SJ] Length = 592 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 42/202 (20%) Query: 1 MVSANRLELLQIADAVAY--EKSIDRD-VVLSVMADSIQKAARSLYGTMSDIRVEINPET 57 ++S ++ E+L+ D ++ EK + V++ + + V+I Sbjct: 121 VLSKDKAEILKAWDKISEACEKGTPLEGTVIAKVKGGLS--------------VDI---- 162 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + F QI L+ R D IG + + + R + +++ Sbjct: 163 -GVKAF----------LPGSQIDLRPTRYLDKY--IGKKMEFKVIKFNKKRGNIVLSRRA 209 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------ 171 I+Q+ R R + + G I+ G VK + +DLG DG++ + Sbjct: 210 ILQEERGKMRQEILDQI--QEGMIVKGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVKH 267 Query: 172 SRENLRPGDRVKSYIYDVRREQ 193 L GD + I ++ Sbjct: 268 PSNLLNMGDEIDVKILKFDSDK 289 >gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10] Length = 405 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLR 177 EA + + E +D G+++ GTV+R+ VD+G DG++ E + L Sbjct: 186 EANKQKVMSELQD--GQVLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVDKPSDVLS 243 Query: 178 PGDRVKSYIYDVRREQRGPQVLLS 201 GD+V+ + V E+ ++ LS Sbjct: 244 EGDQVRVKVLKVDPEKG--KISLS 265 >gi|73667233|ref|YP_303249.1| 30S ribosomal protein S1 [Ehrlichia canis str. Jake] gi|72394374|gb|AAZ68651.1| SSU ribosomal protein S1P [Ehrlichia canis str. Jake] Length = 567 Score = 40.8 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 126 ERDRQYLEFKD---KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLR---P 178 E EF D K G+II GT+ ++ G V +D G S+ ++ E ++ + Sbjct: 44 EFQNALKEFIDDSVKEGQIIEGTIVCIDKGYVTIDSGLKSESIVSLKEFELGDDYQNIGI 103 Query: 179 GDRVKSYIYDVRREQRGPQVLLSR 202 G +VK Y+ + E R V+LSR Sbjct: 104 GSKVKLYLEKI--EGRNGSVVLSR 125 >gi|325968722|ref|YP_004244914.1| DEAD/DEAH box helicase [Vulcanisaeta moutnovskia 768-28] gi|323707925|gb|ADY01412.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta moutnovskia 768-28] Length = 768 Score = 40.8 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 E + + V A L GF D+ ++A I+ I GF + A I +AR Sbjct: 674 EELIELVINLEGVGRTRARALYDAGFKDIADIANADPKAISIIRGFGDRLAHSIIEQAR 732 >gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1-like protein [Streptosporangium roseum DSM 43021] gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM 43021] Length = 500 Score = 40.8 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E + + G+ V++ + ++ Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPADVVEVGEHVEALVL--QK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKEGRLILS 106 >gi|302878374|ref|YP_003846938.1| 30S ribosomal protein S1 [Gallionella capsiferriformans ES-2] gi|302581163|gb|ADL55174.1| ribosomal protein S1 [Gallionella capsiferriformans ES-2] Length = 570 Score = 40.8 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 17/125 (13%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK--DKVGEII 142 + + G V + +A+ ++ I +++ E D + F ++ G I+ Sbjct: 412 EEMVRNFKKGDEVEAVV-------LAIDVERERISLGIKQMEGDP-FGGFAATNEKGAIV 463 Query: 143 SGTVKRVEYGNVIVDL-GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRG 195 +G VK V+ +V L G+ + ++ E R +L+ GD VK+ I V R+ RG Sbjct: 464 NGVVKSVDAKGAVVTLPGDVEAYLKASEVSVDRVEDIRTHLKEGDTVKAMIISVDRKNRG 523 Query: 196 PQVLL 200 + + Sbjct: 524 ISLSV 528 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 + + +D R V +++ +++ A+R+ K G I+ G VK + Sbjct: 160 TMEFKVIKLDRRRNNVVVSRRAVLEATMGADRESVMENLK--EGAIVKGVVKNITDYGAF 217 Query: 156 VDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ + E L GD +++ I +E+ Sbjct: 218 VDLGGIDGLLHITDLAWRRVKHPSEVLTVGDEIEAKILKFDQEKN 262 >gi|330752238|emb|CBL87195.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] gi|330752261|emb|CBL87217.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] Length = 740 Score = 40.8 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 14/148 (9%) Query: 73 ENYTCQISLKVARDRD----PSIDIGG--VVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+ + + + + P+++ + D P F K + +E E Sbjct: 4 EDKNLESTQEETVAIEVVDTPTLEAHEGPDLLDQTPYDQFDWSVGN--KHTLSYSEQEIE 61 Query: 127 RD-RQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 QY + +G EI+ G V + G+V++D+ SDG++ E +L+ GD V Sbjct: 62 DYLNQYEQSLSTIGQNEIVLGKVTAIHDGDVVLDVNYKSDGLVSLSEFRDMPDLKIGDEV 121 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVK 210 + Y+ D + + RG Q++LSR + + Sbjct: 122 QVYVED-KEDLRG-QLVLSRKKAKLLKA 147 >gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189965|gb|EEI70032.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 413 Score = 40.8 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 23/133 (17%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + P+ + A I+Q + ER++ G+I+ G V R+ VDL Sbjct: 165 IEIDPVANRLILSHKA---ILQAQKAEEREKLMDTL--HEGDIVEGKVARLTNFGAFVDL 219 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 G DG++ + + L+ G VK + V ++ ++ LS Sbjct: 220 GGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRN--RISLS----------I 267 Query: 213 HMEVPEIYNGIVQ 225 +PE ++GI + Sbjct: 268 KQTLPEPWDGIEE 280 Score = 37.4 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 15/128 (11%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR-VAVQSAKQVIIQKVREAERDRQYLE 133 + QI+ + + +G V + +DF R S KQ + + E Sbjct: 227 HVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEE------ 280 Query: 134 FKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYI 186 K G ++ GTVKR V++G + +G++ + + L+ G+++K + Sbjct: 281 -KAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKV 339 Query: 187 YDVRREQR 194 DV +++ Sbjct: 340 LDVDPDRK 347 >gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5] gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5] Length = 405 Score = 40.8 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLR 177 EA + + E +D G+++ GTV+R+ VD+G DG++ E + L Sbjct: 186 EANKQKVMSELQD--GQVLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVDKPSDVLS 243 Query: 178 PGDRVKSYIYDVRREQRGPQVLLS 201 GD+V+ + V E+ ++ LS Sbjct: 244 EGDQVRVKVLKVDPEKG--KISLS 265 >gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saburreum DSM 3986] gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saburreum DSM 3986] Length = 368 Score = 40.8 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 30/167 (17%) Query: 63 FRLLEV----VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-------------PPMD 105 F EV V +V + + + AR P+ + L Sbjct: 104 FNNKEVLTGKVVQVVDGGLSVVVDDARVFIPASLVSDTFERDLSKYKDTDIEFVITEFNP 163 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI 165 R + KQ+++ K +E ++ + + G++I GTVK V VDLG +DG++ Sbjct: 164 RRRRIIGDRKQLLLAK-KEEQKKALFDKITP--GDVIEGTVKNVTDFGAFVDLGGADGLL 220 Query: 166 RRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 E ++ + G++V ++I D+ G ++ LS P Sbjct: 221 HISEMSWGRVENPKKVFKSGEKVTAFIKDIS----GEKIALSMKFPD 263 >gi|222054249|ref|YP_002536611.1| PHP domain protein [Geobacter sp. FRC-32] gi|221563538|gb|ACM19510.1| PHP domain protein [Geobacter sp. FRC-32] Length = 579 Score = 40.8 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS 434 L EG + + + + E+ I G ++ A +I EYL I +K++E Sbjct: 34 ALNLEGLS--QAIDNLSHKELLKIPGIGKDFAAKI----EEYLATGKIEAHEKLKEEVPL 87 Query: 435 E--ELCSIPGIDSKIKVALGEN-GIKTMEDLAGCSVD 468 EL IPG+ L + G+K M+DL + + Sbjct: 88 GMLELLVIPGLGPAKAKLLYDKLGVKGMDDLERAAAE 124 >gi|239917616|ref|YP_002957174.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665] gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665] Length = 485 Score = 40.8 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 35 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVEALVL--TK 92 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 93 EDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVE 126 >gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 490 Score = 40.8 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V++D+G ++GVI E E + GD V++ + ++ Sbjct: 37 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSLGDVVEALVL--QK 94 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 95 EDKEGRLILS 104 >gi|171186395|ref|YP_001795314.1| DNA repair and recombination protein RadA [Thermoproteus neutrophilus V24Sta] gi|226736610|sp|B1YC14|RADA_THENV RecName: Full=DNA repair and recombination protein radA gi|170935607|gb|ACB40868.1| DNA repair and recombination protein RadA [Thermoproteus neutrophilus V24Sta] Length = 330 Score = 40.8 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 347 DSINRQKDFNERTQFFMQAI-NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 D+ Q ++ + V + L GF V ++A + E+A + G +EE Sbjct: 8 DAEVAQASVEVNPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEVVG-NEER 66 Query: 406 AVEIQGRAREYL 417 A++I AR+ L Sbjct: 67 ALQIVEAARKML 78 >gi|146329586|ref|YP_001209043.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A] gi|146233056|gb|ABQ14034.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A] Length = 558 Score = 40.8 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +DP+I G + + +D R + +++ +I+ +AER+ + G+++ V Sbjct: 143 KDPAIVEGKEIEFKIIKLDQKRNNIVVSRRAVIEHEYKAEREEVLQNL--QEGDVVKAVV 200 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + +DLG DG++ + E + GD V+ + RE+ Sbjct: 201 KNLTDYGAFLDLGGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRER 253 >gi|110667271|ref|YP_657082.1| hypothetical protein HQ1304A [Haloquadratum walsbyi DSM 16790] gi|109625018|emb|CAJ51433.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] Length = 214 Score = 40.8 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 G+ DI +E S D N F V E L E + ++ I+EI Sbjct: 96 GFEDDIPSENIFSSGATLDANA--DMFT---GVGEKRLRKLEMERLVTLNDILDASINEI 150 Query: 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 A ++GF E+TA ++ E ++ +REL VSE Sbjct: 151 AEVDGFGEQTAKTLKITTIEAAINKLDMSEEDLRELSVSE 190 >gi|167044412|gb|ABZ09089.1| hypothetical protein ALOHA_HF4000APKG6D3ctg6g6 [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 484 Score = 40.8 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433 ++LV VE+LA I ++ I+G +TA + A+ I + K + + Sbjct: 235 NMLVDNKLNTVEDLAKANIQDLTEIKGIGNKTAKKYVTTAKAIQTKTHIIIDKDMIDFPE 294 Query: 434 S--EELCSIPGIDSKIKVALGENGIKTME 460 E + GID + E GI ++ Sbjct: 295 RKVEIFLDLEGIDPQS----AEGGIPQID 319 >gi|58259207|ref|XP_567016.1| recombinase [Cryptococcus neoformans var. neoformans JEC21] gi|134107347|ref|XP_777558.1| hypothetical protein CNBA6800 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260252|gb|EAL22911.1| hypothetical protein CNBA6800 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223153|gb|AAW41197.1| recombinase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 365 Score = 40.8 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +Q + L GF VE +A + +I+G E+ A +I A Sbjct: 34 LQEAGISAQDTKKLADAGFHTVEAVAFTPKKTLCTIKGISEQKADKILAEA 84 >gi|227513320|ref|ZP_03943369.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577] gi|227524464|ref|ZP_03954513.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290] gi|227083193|gb|EEI18505.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577] gi|227088334|gb|EEI23646.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290] Length = 413 Score = 40.8 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 23/133 (17%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + P+ + A I+Q + ER++ G+I+ G V R+ VDL Sbjct: 165 IEIDPVANRLILSHKA---ILQAQKAEEREKLMDTL--HEGDIVEGKVARLTNFGAFVDL 219 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 G DG++ + + L+ G VK + V ++ ++ LS Sbjct: 220 GGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRN--RISLS----------I 267 Query: 213 HMEVPEIYNGIVQ 225 +PE ++GI + Sbjct: 268 KQTLPEPWDGIEE 280 Score = 37.4 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 15/128 (11%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR-VAVQSAKQVIIQKVREAERDRQYLE 133 + QI+ + + +G V + +DF R S KQ + + E Sbjct: 227 HVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEE------ 280 Query: 134 FKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYI 186 K G ++ GTVKR V++G + +G++ + + L+ G+++K + Sbjct: 281 -KAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKV 339 Query: 187 YDVRREQR 194 DV +++ Sbjct: 340 LDVDPDRK 347 >gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 415 Score = 40.8 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------S 172 +Q+VR++ +D+ + + G + +G V + VD+G +DG++ E Sbjct: 216 VQEVRDSRKDQLLEKLEP--GAVRTGRVTSLCDFGAFVDIGGADGLVHLSELSWSRVKHP 273 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 E L+ GD V YI V +++ + + RT Sbjct: 274 EEVLKVGDAVSVYILSVDEDKKRIALSIKRT 304 >gi|297466747|ref|XP_002704678.1| PREDICTED: helicase, POLQ-like [Bos taurus] Length = 1075 Score = 40.8 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A +I A+ L Sbjct: 987 LMEVTGVLEGRARQLYNAGYKSLTHLANANPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 1046 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1047 AEALQEEVEEL 1057 >gi|325290134|ref|YP_004266315.1| RNA binding S1 domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965535|gb|ADY56314.1| RNA binding S1 domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 281 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 137 KVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 + G++++GTV ++ V + ++ G+I R E +NLR GD++++ + VR + + Sbjct: 148 QKGDMVAGTVYQIRREIGAFVAVDHTYKGLIPRSEL--YQNLRNGDQIRARVLRVREDGK 205 >gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus petrolearius DSM 11571] gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus petrolearius DSM 11571] Length = 323 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 V A L G++ +E +A +++A E TA ++ AR+ Sbjct: 8 DLPGVGPTTADKLREAGYSTIEGIATASYADLAEAAEIGESTAKKMIREARK 59 >gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068] gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068] Length = 600 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN-LRPGDRVKSYIYDVRREQRG 195 V +I+ G V RV G V+VD+G S+G I DE E + G V+ I D+ E Sbjct: 43 VNKIVEGRVLRVADGMVLVDIGFKSEGSIPLDEWEEGEEPPQVGQLVRVLIEDLEDETAA 102 Query: 196 P 196 P Sbjct: 103 P 103 Score = 40.4 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 12/121 (9%) Query: 86 DRDPSIDIGGVVSDPLPPM----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 D DIG + + D R + +++ +I++ RE +R+ E + +G++ Sbjct: 164 DIRRPADIGDYIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELE--IGQV 221 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRG 195 G VK + VDLG DG++ + E + ++ + + RE++ Sbjct: 222 RKGVVKNIAEFGAFVDLGGIDGLLHITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKK 281 Query: 196 P 196 Sbjct: 282 I 282 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV----KSYIYDVRRE 192 K G++++GTV R G ++VD+ + + + R GD + + + + Sbjct: 130 KEGQVVTGTVSRKIKGGLLVDIEGVNVFLPASQVDIRRPADIGDYIGRTVQCEVLKIDEA 189 Query: 193 QRGPQVLLSRTH 204 +R +++SR Sbjct: 190 RRN--IVVSRRS 199 >gi|110635932|ref|YP_676140.1| 30S ribosomal protein S1 [Mesorhizobium sp. BNC1] gi|110286916|gb|ABG64975.1| SSU ribosomal protein S1P [Chelativorans sp. BNC1] Length = 569 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAMLSREKARREESWTKLEEKFNKGERVEGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVSPLMHTPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|332880545|ref|ZP_08448219.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681533|gb|EGJ54456.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 597 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%) Query: 123 REAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 REA+ Y +KV E++ GTV + V+V++G SDG+I E +L+ G Sbjct: 29 REAQEKA-YEGSLNKVNDHEVVDGTVIAMNKREVVVNIGFKSDGIIPMSEFRYNPDLKVG 87 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D+V+ YI +E + Q++LS Sbjct: 88 DKVEVYIE--NQEDKKGQLILS 107 Score = 37.4 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 18/134 (13%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK--VREAERD 128 E QI +K RD D + +G + + ++ Q K V++ + EAE + Sbjct: 150 EAFLPGSQIDVKPIRDYD--VFVGKTMEFKVVKIN------QEFKNVVVSHKALIEAELE 201 Query: 129 RQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 +Q E K G+++ GTVK + V +DLG DG+I + +E ++ Sbjct: 202 QQKKEIISKLEKGQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWGRVSDPKEVVQLDQ 261 Query: 181 RVKSYIYDVRREQR 194 ++ I D E++ Sbjct: 262 KINVVILDFDDEKK 275 >gi|254466274|ref|ZP_05079685.1| hypothetical protein RBY4I_2882 [Rhodobacterales bacterium Y4I] gi|206687182|gb|EDZ47664.1| hypothetical protein RBY4I_2882 [Rhodobacterales bacterium Y4I] Length = 187 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 V ++A LL G VE+LA + + + I G A + A E + Sbjct: 9 GVGPVLAKLLKDHGVRSVEDLAGMDDAGLRGIPGIGASRAAALTALAGEAADT 61 >gi|89053212|ref|YP_508663.1| 30S ribosomal protein S1 [Jannaschia sp. CCS1] gi|88862761|gb|ABD53638.1| SSU ribosomal protein S1P [Jannaschia sp. CCS1] Length = 558 Score = 40.8 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ I+++ R +R + G+++ G VK + VDL Sbjct: 158 FQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGKLN--EGDVVDGVVKNITEYGAFVDL 215 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + +E L G+ VK + V +E Sbjct: 216 GGVDGLLHVTDMAWRRVNDPKEILTIGETVKVQVIKVNKET 256 >gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] Length = 699 Score = 40.8 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 +I L G + + + Q +I + +E D +VG++ + VKR+E Sbjct: 582 EIIDETGVKLDIEQDGTIFIGAVDQAMINRAKEIIEDITRE---AEVGQVYNAKVKRIEK 638 Query: 152 GNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 V+L + IS+E L GD ++ I ++ ++ R Sbjct: 639 YGAFVELFPGKDALLHISQISKERINKVEDVLNIGDSIEVKITEIDKQGR 688 >gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM 11551] gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM 11551] Length = 582 Score = 40.8 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIP 441 +EELA + I+G + + +I EY E +I + +R E L S+ Sbjct: 44 IEELAADGADAVGEIQGVGDAISAKII----EYFETGEIEELEALRAELPVEMATLTSVE 99 Query: 442 GIDSKIKVALGEN-GIKTMEDLAGCSVDD 469 G+ K L + GI T+++L + ++ Sbjct: 100 GVGPKTVGKLYDALGITTLDELERAAEEE 128 >gi|306820879|ref|ZP_07454499.1| possible ribosomal protein S1 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550993|gb|EFM38964.1| possible ribosomal protein S1 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 372 Score = 40.8 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AE+D Y E G ++ GTV + +DL +DG + + E E++ GD+V+ Sbjct: 11 AEQDNNYQEI--YKGTVVEGTVILEKDDAFYIDLQYKTDGYLPKSEVFEDEDIHVGDKVR 68 Query: 184 SYIYDVRREQRGPQVLLS 201 ++ V + ++LS Sbjct: 69 LFVIKVDKNNGD--IVLS 84 >gi|15806371|ref|NP_295077.1| excinuclease ABC subunit C [Deinococcus radiodurans R1] gi|81551289|sp|Q9RUN0|UVRC_DEIRA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|6459106|gb|AAF10924.1|AE001981_9 excinuclease ABC, subunit C [Deinococcus radiodurans R1] Length = 617 Score = 40.8 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 L G ++ + + F + + L+ F +E+LA + Sbjct: 526 MLIGVRDEVHNYAVSYHRKLRGEGMLRSVFDDLPGIGQKRRDALLEH-FTSLEDLAAAPV 584 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 IA++ G A + +E+L+ + L Sbjct: 585 EHIAAVPGMTLRAAQSV----KEFLQAREAQL 612 >gi|320101396|ref|YP_004176988.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus DSM 2162] gi|319753748|gb|ADV65506.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus DSM 2162] Length = 329 Score = 40.8 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 8/103 (7%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 EE + +Q++F V IA L A G+ + + E+A G Sbjct: 6 EEKNSRQQQEFITVRSL----PGVGSAIADKLEAAGYVSAWSIVVARPEELAEKTGLPVL 61 Query: 405 TAVEIQGRAREYL----EGIDITLQKKIRELGVSEELCSIPGI 443 T ++ AR+ L + Q+++ ++ S+ + Sbjct: 62 TVQKVIEAARKALGITFKTAREVKQERLNIRKITTGSRSLDEL 104 >gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str. Chicago] Length = 840 Score = 40.8 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVD---EIIAHLLVAEGFADVEELACVKISEIASIE 399 T ++ Q F+ ++ E + L+ GF +E++ + SI Sbjct: 483 TAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLESIY 542 Query: 400 GFDEETAVEI---QGRAREYL 417 F E A + R ++ + Sbjct: 543 QFGTELAKSVVTGIARVKDDM 563 >gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14] gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14] Length = 823 Score = 40.8 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVD---EIIAHLLVAEGFADVEELACVKISEIASIE 399 T ++ Q F+ ++ E + L+ GF +E++ + SI Sbjct: 466 TAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLESIY 525 Query: 400 GFDEETAVEI---QGRAREYL 417 F E A + R ++ + Sbjct: 526 QFGTELAKSVVTGIARVKDDM 546 >gi|317177805|dbj|BAJ55594.1| 30S ribosomal protein S1 [Helicobacter pylori F16] Length = 552 Score = 40.8 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDTNHIGKRIKACIIRVDKENH--SINISR 178 >gi|297673894|ref|XP_002814981.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Pongo abelii] Length = 1100 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A I A+ L Sbjct: 1012 LMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKRIVSSAKMLLHEK 1071 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1072 AEALQEEVEEL 1082 >gi|269115047|ref|YP_003302810.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma hominis] gi|268322672|emb|CAX37407.1| DNA-directed RNA polymerase alpha chain [Mycoplasma hominis ATCC 23114] Length = 344 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D + + + + +N+ + L GF +V+E+ + E+++I+ +++ Sbjct: 254 DDQKEKHEKTPKVSVSIDKLNLTIRSLNALRRAGFNNVDEIMKLSDEELSNIKNLGKKSV 313 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEE 436 +I R RE+L+ + + +E +EE Sbjct: 314 QDIIDRRREWLDSQ-LNNEDSNKEYAANEE 342 >gi|322419070|ref|YP_004198293.1| hypothetical protein GM18_1551 [Geobacter sp. M18] gi|320125457|gb|ADW13017.1| hypothetical protein GM18_1551 [Geobacter sp. M18] Length = 173 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 27/78 (34%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 R Q + +++ L G +++A +A I G I +A+ Sbjct: 1 METRPSNLQQIKGIGRVLSMRLHEAGLDSFKKIAEADQEVLAKIRGITHRNLNPILEQAK 60 Query: 415 EYLEGIDITLQKKIRELG 432 E+ ++++ + Sbjct: 61 EFASAAPEAGKERLEAMK 78 >gi|296124359|ref|YP_003632137.1| hypothetical protein Plim_4127 [Planctomyces limnophilus DSM 3776] gi|296016699|gb|ADG69938.1| hypothetical protein Plim_4127 [Planctomyces limnophilus DSM 3776] Length = 1053 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 18/126 (14%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ E+ + + + Q V E + L EGF + E+ + + Sbjct: 375 DMTPEDMQAALDNLEVQLPPEAASQLGAVPEGLLQTLKIEGF---------PLDELLAAQ 425 Query: 400 G---FDEE---TAVEIQGRAREYLEGIDITLQKKIRELGVS---EELCSIPGIDSKIKVA 450 G E + RE LE + + EL ++L I G+ + A Sbjct: 426 GALGITPEQLGEIEALLTSYREELEREGLLDFASLGELADEALLKDLAEIEGMSEYLAFA 485 Query: 451 LGENGI 456 I Sbjct: 486 AACRSI 491 >gi|119173930|ref|XP_001239326.1| hypothetical protein CIMG_08947 [Coccidioides immitis RS] Length = 366 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 LL+ G+ VE +A + I+G E+ A +I A Sbjct: 56 IKLLIDGGYHTVEAVAYTPKRMLEQIKGISEQKAAKILAEA 96 >gi|157820041|ref|NP_001100437.1| hypothetical protein LOC302773 [Rattus norvegicus] gi|149055472|gb|EDM07056.1| similar to Vigilin (High density lipoprotein-binding protein) (predicted) [Rattus norvegicus] Length = 1250 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 255 VGMRGSRVQAVVTELRD---------EKIDIV-----VW-SPDSATFVINALRPAIVTKV 299 +G +G RV+ + + D EK DIV + S A ++ N L Sbjct: 510 IGQKGERVREICKKFPDVILNFPHPAEKSDIVQLIGPRYESEKCAQYLENMLT------- 562 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDF 355 + E+ I + + K+ IG+ N++ S+ T I E EE I + Sbjct: 563 DIKENNYSISISIIKKLHKRLIGKGASNIKKISETTNTKISFPPENCNSEEFIITGYPEN 622 Query: 356 NERTQFFMQAINVDEIIAHLLVAE 379 E + ++ +++ + IA E Sbjct: 623 CEIARNWI--LSIQQEIADTAEEE 644 >gi|6116772|dbj|BAA85760.1| UVR-C protein [Deinococcus radiodurans] Length = 610 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 L G ++ + + F + + L+ F +E+LA + Sbjct: 519 MLIGVRDEVHNYAVSYHRKLRGEGMLRSVFDDLPGIGQKRRDALLEH-FTSLEDLAAAPV 577 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 IA++ G A + +E+L+ + L Sbjct: 578 EHIAAVPGMTLRAAQSV----KEFLQAREAQL 605 >gi|125987739|sp|Q1XDE2|RR1_PORYE RecName: Full=30S ribosomal protein S1, chloroplastic Length = 263 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE-------TISRENLRPGDRVKSYIYDVR 190 VG II G + ++ + + +GN G++ E IS + GD +K+ I V Sbjct: 191 VGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISS-QFKIGDTIKAVIIHVD 249 Query: 191 REQRGPQVLLSRTH 204 ++Q ++ LS H Sbjct: 250 KKQG--RLSLSMKH 261 >gi|15790649|ref|NP_280473.1| 50S ribosomal protein L32e [Halobacterium sp. NRC-1] gi|169236388|ref|YP_001689588.1| 50S ribosomal protein L32e [Halobacterium salinarum R1] gi|13431823|sp|Q9HPB7|RL32_HALSA RecName: Full=50S ribosomal protein L32e; AltName: Full=HL5 gi|10581176|gb|AAG19953.1| 50S ribosomal protein L32E [Halobacterium sp. NRC-1] gi|167727454|emb|CAP14242.1| ribosomal protein L32.eR [Halobacterium salinarum R1] Length = 239 Score = 40.8 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 D N+ + V A L GF V ++ SE+A +G A I Sbjct: 1 MSDENDTPEELADISGVGPSKAEALAEAGFESVADVQAADQSELAEADGIGNALAARI-- 58 Query: 412 RAREYLEGIDITLQKKIRELGVSEE 436 +A ++ ++ E+G +E Sbjct: 59 KADVGGLEVEADTDAEVEEVGGDDE 83 >gi|283798175|ref|ZP_06347328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp. M62/1] gi|291074158|gb|EFE11522.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp. M62/1] gi|295091663|emb|CBK77770.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10] Length = 375 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 19/150 (12%) Query: 69 VEEVENYTCQIS---LKVARDRDPSIDIGGVVSD---PLPPMDFGRVAVQSAKQVIIQKV 122 V EVE I + D+D S G + P + +Q++++K Sbjct: 125 VVEVEGTRVFIPASMVSDTYDKDLSKYAGQEIEFVITEFNPSGRRSRIIGDRRQLLMEK- 183 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENL 176 + A + + + +VG+ + G VK V +DLG +DG++ E ++ Sbjct: 184 KAAMQKELFE--RIEVGQTVEGVVKNVTDFGAFIDLGGADGLLHISEMSWGRVENPKKVF 241 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 + G+ VK+ I D+ G ++ LS P+ Sbjct: 242 KVGETVKALIKDI----NGEKIALSLKFPE 267 >gi|254419951|ref|ZP_05033675.1| ribosomal protein S1 [Brevundimonas sp. BAL3] gi|196186128|gb|EDX81104.1| ribosomal protein S1 [Brevundimonas sp. BAL3] Length = 567 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN---LRPGDRVKSYIYDVRR 191 G+++ G V +E VI+D+G ++G I E E+ + GD V+ Y+ V Sbjct: 27 EGQVVHGRVVGIEKDIVIIDVGLKTEGRISMREFGQGEDAKLPKVGDNVEVYLERVEN 84 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +G + MD R + +++ I+++ R +R + Sbjct: 139 PGSQVDIRPVRDVGPL--MGKEQPFQILKMDRPRGNIVVSRRAILEEARAEQRTELVGQL 196 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + GE+ G VK + VDLG DG++ + + L GD VK I Sbjct: 197 --QEGEVREGVVKNITDYGAFVDLGGIDGLLHVTDMSWKRVSHPSQVLAVGDTVKVQIVK 254 Query: 189 VRREQ 193 + + Sbjct: 255 INPDT 259 >gi|194209009|ref|XP_001494572.2| PREDICTED: similar to DNA helicase HEL308 [Equus caballus] Length = 1122 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1031 LMEVTGVLEARAKQLYSAGYKSLMHLANANPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 1090 Query: 421 DITLQKKIREL 431 L++++ EL Sbjct: 1091 AEALREEVEEL 1101 >gi|261403651|ref|YP_003247875.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius M7] gi|261370644|gb|ACX73393.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius M7] Length = 763 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 15/100 (15%) Query: 139 GEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRG 195 G+ GTV R+E ++L + G++R + IS ENL GD + DVR E+R Sbjct: 135 GKFYKGTVTRIEKYGAFINLNDQVRGLLRPRDMISLRLENLNVGDEIIVQAMDVRPEKRE 194 Query: 196 P---QVLLSRTHPQFMVKLFHMEVP-----EIYNGIVQVK 227 + LS + F EVP +I +++++ Sbjct: 195 IDFKYIPLS--TYDLVE--FEKEVPLTTIKDISQNLIEMR 230 >gi|254526566|ref|ZP_05138618.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202] gi|221537990|gb|EEE40443.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202] Length = 401 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRRE 192 K GE+I+ + G + D+ G I R + ++ + G +K +V E Sbjct: 213 SAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPE 272 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + KL +E+ ++ G V Sbjct: 273 SR--KLVLSEKKASLVSKLTSLELGQLIEGEV 302 >gi|187933110|ref|YP_001884760.1| 30S ribosomal protein S1 [Clostridium botulinum B str. Eklund 17B] gi|187721263|gb|ACD22484.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum B str. Eklund 17B] Length = 378 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 12/151 (7%) Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 SL D S + + +DF V ++++ I + E R + K G Sbjct: 136 SLASRNMIDLSALKNTELEVRIIELDFRNNKVVASRKAIENEEYEKNRKVIWNSLK--EG 193 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 E +G VK++ VD+G +G++ + E ++ D+V+ YI + E+ Sbjct: 194 EKRTGVVKKLVKYGAFVDIGGVEGLVHISDLSWNRVNRPEEVVKENDKVEVYIGSIDVEK 253 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 + ++L + + + EI +G++ Sbjct: 254 QKLSLVL----KDINKEPWTLHTNEIKSGMI 280 >gi|74002142|ref|XP_544959.2| PREDICTED: similar to DNA helicase HEL308 [Canis familiaris] Length = 1072 Score = 40.8 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A ++ A+ L Sbjct: 985 LMEVTGVLEGRAKQLYNAGYKSLTHLANANPEVLIRTIDHLSRHQAKQMVSSAKMLLHEK 1044 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1045 AEALQEEVEEL 1055 >gi|15669060|ref|NP_247864.1| DNA repair and recombination protein RadA [Methanocaldococcus jannaschii DSM 2661] gi|2500109|sp|Q49593|RADA_METJA RecName: Full=DNA repair and recombination protein radA gi|1378034|gb|AAC44122.1| RadA [Methanocaldococcus jannaschii] gi|1591553|gb|AAB98875.1| DNA repair protein RAD51 (radA) [Methanocaldococcus jannaschii DSM 2661] Length = 352 Score = 40.8 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 18/50 (36%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 Q V A L G+ D ++A I E+ I+G E+ Sbjct: 29 MVIIMDDLTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEK 78 >gi|331268721|ref|YP_004395213.1| rpsA [Clostridium botulinum BKT015925] gi|329125271|gb|AEB75216.1| rpsA [Clostridium botulinum BKT015925] Length = 387 Score = 40.8 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 12/133 (9%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QIS+ +D ++ V+ + D + V + + + K R+ ++++ Sbjct: 141 PASQISISFVKDLTSFVEK--VLKVKVIEFDEKKNKVVLSGKEVELKERQNKKEKVLDSL 198 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K+ GE +G V+R+ VDLG DG+I + E ++ GD+V+ Y+ Sbjct: 199 KN--GEKRTGIVRRLAKFGAFVDLGGVDGLIHNSDLSWKRVNDPSEVVKVGDKVEVYVLK 256 Query: 189 VRREQRGPQVLLS 201 +E+ ++ LS Sbjct: 257 FDKEKG--KIALS 267 >gi|149198742|ref|ZP_01875785.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155] gi|149138178|gb|EDM26588.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155] Length = 463 Score = 40.4 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 S +R D S+ +G S + +D R AV S ++ ++ + E +R++ E G Sbjct: 142 SQMDSRPGDASLYLGQTFSFLITKID-DRGAVVS-RRDYLKILAEKQREKLQEELV--EG 197 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + I G ++R+E VDLG DG++ E E + GD+V I + E+ Sbjct: 198 DEIEGVIRRIERFGFFVDLGGVDGLVPASEVSWKRNVDLNEFVSVGDQVSCKILALDWEK 257 Query: 194 RGPQVLLS 201 ++ LS Sbjct: 258 G--RITLS 263 >gi|126540735|emb|CAM45953.1| RAD51 homolog (S. cerevisiae) [Mus musculus] Length = 178 Score = 40.4 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L G+ VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQ 410 +I Sbjct: 72 DKIL 75 >gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] Length = 800 Score = 40.4 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 18/121 (14%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 G + + +D R +Q I+++ E F G I V R E Sbjct: 647 FQPGQEIEFCITRIDKRRRRIQIG----IKQLSEDPWKALAKAFP--EGSEIETKVLRKE 700 Query: 151 YGNVIVDL-GNSDGVIRRDETIS---------RENLRPGDRVKSYIYDVRREQRGPQVLL 200 ++V++ G +G I + R+ L+ GD +++ + +++ +R +++L Sbjct: 701 PQGIVVEVQGGIEGFIPNRQLCDPAVESPETVRDRLKEGDTIRALVLELKPSKR--RLIL 758 Query: 201 S 201 S Sbjct: 759 S 759 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I+ G VK +DLG DG++ + ++ ++ G++V+ I + Sbjct: 428 KEGDIVEGVVKSFAPFGAFIDLGGFDGLLHLQDMSWGRAVRPKDYVKKGEKVRVKIIKMD 487 Query: 191 REQRGPQVLLS 201 REQ+ +V LS Sbjct: 488 REQQ--KVNLS 496 >gi|170580792|ref|XP_001895410.1| KH domain containing protein [Brugia malayi] gi|158597654|gb|EDP35742.1| KH domain containing protein [Brugia malayi] Length = 439 Score = 40.4 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 56/217 (25%) Query: 213 HMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR-- 270 V E + +VQVK + P + VGA +G G ++ + +E Sbjct: 23 KAHVSETEDNMVQVKVL--IPSA--------------AVGALIGKGGETMRNLKSESGCR 66 Query: 271 -------------DEKI--------------DIVVWSPDSATFVINALRPAIVTKVVLDE 303 +E+I D+++ V N P+ + E Sbjct: 67 LQMSKNQEVYPGTNERICLVKGKIASVLKVSDVIL--EKIREKVDNN-TPSDIFDHKGME 123 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 ++++VP + IG+ G ++ + TG I + + + T Sbjct: 124 RKNEMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQVYPKAGSQEAKVSQERIITIAAE 183 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 Q DE++ L +E++A +A+I Sbjct: 184 Q----DEVLMDALQRV----LEKVAADPQHAMATIPD 212 >gi|126695894|ref|YP_001090780.1| 30S ribosomal protein S1-like protein B, putative Nbp1 [Prochlorococcus marinus str. MIT 9301] gi|126542937|gb|ABO17179.1| 30S ribosomal protein S1-like protein B, putative Nbp1 [Prochlorococcus marinus str. MIT 9301] Length = 401 Score = 40.4 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRRE 192 K GE+I+ + G + D+ G I R + ++ + G +K +V E Sbjct: 213 SAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPE 272 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + KL +E+ ++ G V Sbjct: 273 SR--KLVLSEKKASLVSKLTSLELGQLIEGEV 302 >gi|227498498|ref|ZP_03928644.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Acidaminococcus sp. D21] gi|226903956|gb|EEH89874.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Acidaminococcus sp. D21] Length = 680 Score = 40.4 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 + +IS + +G V + +D + + + + + + +A Sbjct: 516 HISEISWDRSVKPADLYKVGDKVEVYIKGLDAEKGRISLSVKALQEDPWQAAAKNI---- 571 Query: 135 KDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETI------SRENLRPGDRVKSYIY 187 VG+I++GTV R IV L ++G+I E + L G VK + Sbjct: 572 --HVGDIVTGTVLRFLPFGAIVKLNDKNEGMIHISEISEQRIEKPEDVLEVGQEVKVKVL 629 Query: 188 DVRREQRGPQVLLS 201 V E + ++ LS Sbjct: 630 RVDTEHK--KIALS 641 >gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] gi|254040133|gb|ACT56929.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] Length = 576 Score = 40.4 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 23/185 (12%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIR-VEINPETGDISLFRLLEVVEEVEN 74 + +K++ R+ V + + I V N G +++ EV Sbjct: 90 FSRDKAL-REGVWEKIEA--------KFRAGERIEGVIFNQVKGGMTVDLNGEVA---FL 137 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI ++ RD P + + + MD R + +++ ++++ R +R + Sbjct: 138 PRSQIDIRPVRDVTPLMHEPQL--FEILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQKL 195 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + G++I GTVK + V VDL DG++ + + L G +VK I Sbjct: 196 E--EGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIR 253 Query: 189 VRREQ 193 + +E Sbjct: 254 INQET 258 >gi|303318132|ref|XP_003069067.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108750|gb|EER26922.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037268|gb|EFW19206.1| DNA repair protein RAD51 [Coccidioides posadasii str. Silveira] Length = 348 Score = 40.4 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 LL+ G+ VE +A + I+G E+ A +I A Sbjct: 38 IKLLIDGGYHTVEAVAYTPKRMLEQIKGISEQKAAKILAEA 78 >gi|149410744|ref|XP_001509890.1| PREDICTED: similar to DNA polymerase beta [Ornithorhynchus anatinus] Length = 347 Score = 40.4 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E ++G + A +I E+L + +KIR+ L + GI Sbjct: 154 AEAKKLDGVGAKIAEKI----DEFLSTGKLRKLEKIRQDDTGSSINFLTRVSGIGPSAAR 209 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 210 KLVDEGIKTLEDL 222 >gi|301098091|ref|XP_002898139.1| DNA repair protein RAD51 [Phytophthora infestans T30-4] gi|262105500|gb|EEY63552.1| DNA repair protein RAD51 [Phytophthora infestans T30-4] Length = 338 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E + + + R ++ ++ + L G V+ +A ++ I+G E Sbjct: 9 EMDMGVEEHEMQGPRLVNILEQAGINATDVNKLKDAGMHTVDAVAMATKKQLVGIKGISE 68 Query: 404 ETAVEIQGRAREYLE---GIDITLQKKIREL 431 A ++ ARE + + + ++L Sbjct: 69 VKAEKMLKAAREMVNVGFTTAADVLESRKDL 99 >gi|291614518|ref|YP_003524675.1| ribosomal protein S1 [Sideroxydans lithotrophicus ES-1] gi|291584630|gb|ADE12288.1| ribosomal protein S1 [Sideroxydans lithotrophicus ES-1] Length = 568 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G +++G VK ++ G VI G+ + ++ E + R +L+ GD VK+ I +V Sbjct: 455 KGAVVTGVVKSLDAKGAVIGLDGDVEAYLKASEVSADRVEDIRNHLKEGDTVKAVIINVD 514 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 515 RKNRG--INLS 523 Score = 37.4 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 + + +D R V +++ +++ + A+R+ K G I+ G VK + Sbjct: 156 TMELKVIKLDRKRNNVVVSRRAVLEASQGADRESLLENLK--EGAIVKGIVKNITDYGAF 213 Query: 156 VDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ + E L GD V++ I +E+ Sbjct: 214 VDLGGIDGLLHITDLAWRRVKHPSEVLTVGDEVEAKILKFDQEKN 258 >gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23] gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23] Length = 575 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 9/117 (7%) Query: 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIP 441 +EE+A + + G + A +I E+L + +++ E+ +P Sbjct: 44 IEEIAKKGKEALLELPGIGPDLADKIL----EFLATGRVKKHEELSGKVPRGVLEVMEVP 99 Query: 442 GIDSKIKVALGEN-GIKTMEDLAG-CSVDDLLGWSENKGGNIEKF-DGFLSSLGTPK 495 G+ K L E GI ++E L DLL E+ +G L + K Sbjct: 100 GVGPKTARGLYEALGIDSLEKLKEALERGDLLRLKGFGAKKAERIKEGLLLAQAASK 156 >gi|166031925|ref|ZP_02234754.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC 27755] gi|166028378|gb|EDR47135.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC 27755] Length = 359 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 12/145 (8%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + + ++D S + + + R V ++ ++ + ++ Sbjct: 125 VVDEARVFIPASLVSDTYEKDLSKYQDQEIEFVISEFNPRRNRVIGDRRQLLVAEKAEKQ 184 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDR 181 + + VG+ + G VK V +DLG DG++ E ++ + GD Sbjct: 185 KELFEKL--HVGDTVEGVVKNVTDFGAFIDLGGVDGLLHISEMSWGRVENPKKVFKVGDE 242 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQ 206 +K + D+ ++ LS P+ Sbjct: 243 LKVLVKDIHDT----KIALSLKFPE 263 >gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773] Length = 681 Score = 40.4 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +I + K+ + F I + A LVAE F + +A + EIASI+G E A Sbjct: 504 AAITQSKENSLERLLFGLGIRLVGAKAARLVAEKFKTLSAIAEATVPEIASIDGIGEAIA 563 Query: 407 VEIQG 411 I Sbjct: 564 QSIVQ 568 >gi|332233399|ref|XP_003265889.1| PREDICTED: helicase POLQ [Nomascus leucogenys] Length = 1101 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L + G+ + LA + +I+ A +I A+ L Sbjct: 1013 LMEVTGVLEGRAKQLHSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEK 1072 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1073 AEALQEEVEEL 1083 >gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205] Length = 448 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G++I V +G + D+ G + R + EN G + +V + Sbjct: 260 EKEGKVIQVKVNGFNHGGITCDVEGLRGFVPRSQLQEGENHEALVGKTLGVAFLEVNPDT 319 Query: 194 RGPQVLLSRTHPQFMVKLFH-MEVPEIYNG-IVQVK 227 R +++LS LF +EV ++ G +V +K Sbjct: 320 R--KLVLSEKKAA-TAALFQNLEVGQLVEGQVVAIK 352 Score = 40.4 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%) Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKS 184 +F GE+++GTV +E V VD+ G + G + + E T +E G V+ Sbjct: 169 QDFVGTTGEVVTGTVIGMESDGVYVDIGGKAPGFMPKKECALGVITNLKERFPKGLTVEV 228 Query: 185 YIYD 188 + Sbjct: 229 LVTR 232 >gi|319790655|ref|YP_004152288.1| RNA binding S1 domain protein [Thermovibrio ammonificans HB-1] gi|317115157|gb|ADU97647.1| RNA binding S1 domain protein [Thermovibrio ammonificans HB-1] Length = 339 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 123 REAERDRQYLE-FKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 E E + E FK E+I+GTV +V V VD G S+GV+ E + GD Sbjct: 1 MEGEFAKLLEESFKKLNQEVITGTVVKVTDREVFVDFGWKSEGVVPVKEL--GYKPKVGD 58 Query: 181 RVKSYIYDVRREQ 193 ++ + + E+ Sbjct: 59 KIDVCVVEPETEE 71 >gi|298735946|ref|YP_003728471.1| 30S ribosomal protein S1 [Helicobacter pylori B8] gi|298355135|emb|CBI66007.1| small subunit ribosomal protein S1 [Helicobacter pylori B8] Length = 556 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58] gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58] Length = 485 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E E + GD V++ + + Sbjct: 35 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVEALVL--TK 92 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + +++LS+ Q+ +E + +G+V+ Sbjct: 93 EDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVE 126 >gi|258597225|ref|XP_001347762.2| Rad51 homolog [Plasmodium falciparum 3D7] gi|25991345|gb|AAN76809.1|AF452489_1 recombinase Rad51 [Plasmodium falciparum] gi|254832605|gb|AAN35675.2| Rad51 homolog [Plasmodium falciparum 3D7] Length = 350 Score = 40.4 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 TID I EE+ K + F++ LL G VE +A + + + Sbjct: 19 TIDEIEEEQLYTGPLKIEQLLAKGFVKRD------LELLKEGGLQTVECVAYAPMRTLCA 72 Query: 398 IEGFDEETAVEIQGRARE 415 I+G E+ A +++ +E Sbjct: 73 IKGISEQKAEKLKKACKE 90 >gi|126179709|ref|YP_001047674.1| phosphotransferase domain-containing protein [Methanoculleus marisnigri JR1] gi|125862503|gb|ABN57692.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1] Length = 576 Score = 40.4 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 12/105 (11%) Query: 385 EELACVKIS-EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS--EELCSIP 441 E +A V ++ I G + A +I RE LE + +RE + L + Sbjct: 47 ENVADVAREGDLDEIPGVGKGIAKKI----REILETGSLGYLSSLREELPEGVQHLTRLE 102 Query: 442 GIDSKIKVALG-ENGIKTMEDLAGCS----VDDLLGWSENKGGNI 481 GI K +AL E GI+T++DL + + DL G+ E NI Sbjct: 103 GIGPKKAIALSRELGIRTVDDLEAKALAGRIRDLPGFGEKTEANI 147 >gi|262341079|ref|YP_003283934.1| 30S ribosomal protein S1 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272416|gb|ACY40324.1| 30S ribosomal protein S1 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 605 Score = 40.4 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 67 EVVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE E I++K RD D + V + + V S K +I + + Sbjct: 161 LIVEIFDIECFLPGSHINVKPVRDYDTYVGKTMEVKV-VKINQKTKNVVVSHKVLIERDI 219 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENL 176 E ++ K G+++ G +K + VDLG D ++ + E + Sbjct: 220 EEQRKEMI---SKLDKGQVLEGKIKNILPYGAFVDLGGVDALLHITDMSWPHINHPTEVV 276 Query: 177 RPGDRVKSYIYDVRREQRGPQV 198 + +K + V +++ Q+ Sbjct: 277 QLEQELKFVVLGVDKDKNRVQL 298 >gi|242024497|ref|XP_002432664.1| mitochondrial 28S ribosomal protein S28, putative [Pediculus humanus corporis] gi|212518134|gb|EEB19926.1| mitochondrial 28S ribosomal protein S28, putative [Pediculus humanus corporis] Length = 183 Score = 40.4 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ ++++ D G+I+ GT+ V ++ +D G + + E PG +V+ I Sbjct: 80 RNSKFMQLGDPEGKIVIGTIYHVMDNDLYIDFGWKFPTVCQKPQKFSEQYYPGVKVRLLI 139 Query: 187 YDVRREQR 194 D+ + Sbjct: 140 KDLELSTK 147 >gi|207109156|ref|ZP_03243318.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 93 Score = 40.4 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE-----NYTC 77 ++++ V+ + K A++ ++ V E + L +L+EV+E+ + + + Sbjct: 2 PKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEVLEDNDERLINDPSK 59 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 ISL A++ DPS+ I +S L + + A+ Sbjct: 60 YISLSKAKEMDPSVKIKDELSYSLSLENMKQGAI 93 >gi|103486980|ref|YP_616541.1| 30S ribosomal protein S1 [Sphingopyxis alaskensis RB2256] gi|98977057|gb|ABF53208.1| SSU ribosomal protein S1P [Sphingopyxis alaskensis RB2256] Length = 570 Score = 40.4 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +D+ + MD R + +++ I+++ R +R Sbjct: 140 PGSQVDIRPVRDVGPLMDLPQP--FQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQNL 197 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + G+II G VK + VDLG DG++ + E + GD VK I Sbjct: 198 E--EGQIIEGAVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEIINIGDTVKVQIIR 255 Query: 189 VRREQ 193 + R+ Sbjct: 256 INRDT 260 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISREN--LRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E + + L+ GD V+ Y+ V Sbjct: 28 EGRVVKGTVTAIENDLAVIDIGLKSEGRVPLREFAMPGQKADLKVGDEVEVYVDRVENAN 87 Query: 194 RGPQVLLSR 202 + +LSR Sbjct: 88 G--ETMLSR 94 >gi|260891275|ref|ZP_05902538.1| ribosomal protein S1 [Leptotrichia hofstadii F0254] gi|260858951|gb|EEX73451.1| ribosomal protein S1 [Leptotrichia hofstadii F0254] Length = 600 Score = 40.4 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 19/151 (12%) Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQV 117 D +F LE EV + + S R +G V + +D + S KQ Sbjct: 439 DYGIFVELEKGIEVFIHKNEFSWD--RKEHKEYKVGDEVEFKIIVVDKLAKKLSGSIKQ- 495 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS---- 172 + ++ ++K G I++ + ++ V+V L +G+I + E Sbjct: 496 ----LEKSPWKEVTEQYK--KGNIVNTEIVEIQENFVLVKLTDRFNGIIPKRELAEEFLK 549 Query: 173 --RENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E GD+V++ I D+ +++ + LS Sbjct: 550 DISEKFSVGDKVEAVITDINDKRK--SIALS 578 >gi|258592125|emb|CBE68430.1| 30S ribosomal subunit protein S1 [NC10 bacterium 'Dutch sediment'] Length = 577 Score = 40.4 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISRENL--RPGDRVKSYIYDVRREQ 193 GEI+ GTV + V++D+G S+G I E L + GD V Y+ + + Sbjct: 44 EGEIVRGTVLEIRNDMVLIDIGYKSEGAIPIKEFQAPSGELTVKVGDTVDVYLEQ-KEDS 102 Query: 194 RGPQVLLSR 202 G ++LSR Sbjct: 103 DGL-IVLSR 110 Score = 37.0 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+II G VK + +DLG DG++ + E GD ++ + R Sbjct: 214 EGKIIRGKVKNITEYGAFIDLGGLDGLLHITDMSWGRVGHPSELFTVGDEIEVVVLKFDR 273 >gi|258648127|ref|ZP_05735596.1| ribosomal protein S1 [Prevotella tannerae ATCC 51259] gi|260852006|gb|EEX71875.1| ribosomal protein S1 [Prevotella tannerae ATCC 51259] Length = 590 Score = 40.4 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +++ GTV + V+V +G SDG++ E L+ GD+V+ YI +E + Sbjct: 45 ENDVVEGTVISINKREVVVSIGFKSDGIVPVSEFRYNPELQVGDKVEVYIE--NQEDKKG 102 Query: 197 QVLLSRTHPQFMVK 210 Q++LS + Sbjct: 103 QLVLSHKKARLSKA 116 >gi|118792630|ref|XP_320427.3| AGAP012103-PA [Anopheles gambiae str. PEST] gi|116116989|gb|EAA00333.3| AGAP012103-PA [Anopheles gambiae str. PEST] Length = 494 Score = 40.4 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 40/121 (33%) Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDE-KIDIV-----VWSPDSAT 285 + VGA +G +G ++ ++ E + E K+ I+ W A Sbjct: 291 NAVGAIIGTKGLHIRNIIRFSGASVKIAPLEADKPQEQQTERKVTIIGTPEAQW---KAQ 347 Query: 286 FVINALRPAIVTKVV-------LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 ++I K+ D+ +E+ VP Q+ IG+ GQNVR ++TG Sbjct: 348 YLI-------FEKMREEGFVSGTDDVRLTVEIFVPSAQVGRIIGKGGQNVRELQRVTGSI 400 Query: 339 I 339 I Sbjct: 401 I 401 >gi|112984536|ref|NP_001037484.1| Rad51 homolog [Bombyx mori] gi|2058709|gb|AAB53330.1| Rad51 homolog [Bombyx mori] Length = 338 Score = 40.4 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ + L G+ VE +A + +I+G E A +I A + Sbjct: 27 LEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASK 79 >gi|320166818|gb|EFW43717.1| hypothetical protein CAOG_01761 [Capsaspora owczarzaki ATCC 30864] Length = 1852 Score = 40.4 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 23/127 (18%) Query: 344 EEEDSINRQKDFNERTQFFMQAIN---VDEIIAHLLVAEGFADVE--------------- 385 EE + + Q M+ + VDE A + GF ++ Sbjct: 255 EESHGHQDTAEADGAAQMEMEREDAMAVDEETAGSAASGGFLSLQQLVNLRGEVARIRKA 314 Query: 386 ----ELACVKISEIASIEGFDEETAVEI-QGRAREYLEGIDITLQKKIRELGVSEELCSI 440 E+ I + +I G E A+E+ + +E + T+ + + ++ ++ + Sbjct: 315 DRLAEVQQADILRLMAILGKHTELALELDLNEEDDDVEQLADTVIQSLTAAAITMDILTT 374 Query: 441 PGIDSKI 447 PG+ +I Sbjct: 375 PGMPRQI 381 >gi|328699990|ref|XP_001949079.2| PREDICTED: vigilin-like [Acyrthosiphon pisum] Length = 1414 Score = 40.4 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 20/165 (12%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE----- 309 +G GS ++ ++ +EK+ V +S D+ V P + V+D IE Sbjct: 380 IGKNGSNLRELIE--DNEKVH-VEFSDDNKIIVE---GPTNMIPKVIDSLKKAIECYVST 433 Query: 310 -VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI-ITEEEDSINRQKDFNERTQFFMQAIN 367 ++V + IG+ G N+ TG I+I ++ +I R + + + + Sbjct: 434 ELVVDPKFFKHIIGKNGSNINRVKNDTGVIINISESDNNSNIIRIEGRKDGVELAKSEL- 492 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 E + + L E VE+ + +I G E E+Q Sbjct: 493 --EEMIYKLENE----VEKEISIDQRHHRAIIGVKGEKVRELQEA 531 >gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] Length = 662 Score = 40.4 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 12/133 (9%) Query: 363 MQAINVDEIIAHLLVAE-GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M + E +L+ + +EE+ VK ++ +EGF E+ + + + + Sbjct: 444 MNIDGLSEKTLKVLLEKLNITSIEEIYDVKKEQLMQLEGFKEKKSQNLINAIEK---SKN 500 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + L I LG IP I K L + K+ ++L D+L+ + Sbjct: 501 VDLANFIFALG-------IPEIGEKTSFELAQK-YKSFDNLREAKFDELIQIEDIGNVIA 552 Query: 482 EKFDGFLSSLGTP 494 E+ F Sbjct: 553 EEIVEFFHDETIS 565 >gi|169843884|ref|XP_001828666.1| Rah1 [Coprinopsis cinerea okayama7#130] gi|3237296|gb|AAC23703.1| Rah1 [Coprinopsis cinerea] gi|116510275|gb|EAU93170.1| Rah1 [Coprinopsis cinerea okayama7#130] Length = 343 Score = 40.4 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 23/70 (32%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E + +Q + L G VE +A + +I G E+ Sbjct: 12 EGDEEDYQFSGPLLVNKLQEAGIHANDIKKLADAGLNTVEAVAFTPKKNLLAIRGISEQK 71 Query: 406 AVEIQGRARE 415 A +I A++ Sbjct: 72 ADKILAEAQK 81 >gi|328859161|gb|EGG08271.1| hypothetical protein MELLADRAFT_105250 [Melampsora larici-populina 98AG31] Length = 122 Score = 40.4 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 EEE+ N+ + + L+ G VE +A + +I+G E Sbjct: 17 EEEEDQNQAQASGPIPIAALAEHGFSSSDIQKLITAGNDTVEAIAYQPRKSLIAIKGISE 76 Query: 404 ETAVEIQGR 412 A ++Q R Sbjct: 77 AKADKLQFR 85 >gi|251772978|gb|EES53535.1| ribosomal protein S1 [Leptospirillum ferrodiazotrophum] Length = 505 Score = 40.4 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L+ RD D + G + + M+ R + +++V++++ R+ + Sbjct: 110 PGSQIDLRPVRDMDRLV--GQPIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKLTMESL 167 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K GE++ G VK + +DLG DG++ + + + GD++ + Sbjct: 168 K--EGEVLEGIVKNITDYGAFIDLGGVDGLLHITDMSWGRVSSPQNLMAVGDKINVMVLK 225 Query: 189 VRREQ 193 +E Sbjct: 226 HDKET 230 >gi|225559662|gb|EEH07944.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] gi|325089671|gb|EGC42981.1| uvsC [Ajellomyces capsulatus H88] Length = 348 Score = 40.4 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Query: 342 ITEEEDSINRQKDFN----ERTQFFMQAINVDEIIA---HLLVAEGFADVEELACVKISE 394 +T E++S N ++ V+ + A L++ G+ +E +A Sbjct: 1 MTVEDESQNEYEENGLAGPGAPTPLTALEGVNGLTARDIKLVIDGGYHTIESVAYTPKRM 60 Query: 395 IASIEGFDEETAVEIQGRARE 415 + I+G E+ A +I A + Sbjct: 61 LEQIKGISEQKATKILAEASK 81 >gi|312126567|ref|YP_003991441.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776586|gb|ADQ06072.1| RNA binding S1 domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 255 Score = 40.4 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 14/115 (12%) Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 ++ L+ +G ++ + + GR + K ++K R+ +++ Sbjct: 54 EAELGLQEQVKNKADALLGALIEFVVVAQENGRFYISRVK--AMEKRRKIWQEKI----- 106 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 K G+I+ G V V N +++ + + +E + R + + DRVK+ Sbjct: 107 -KEGDIVEGRVTGVTPRNAFIEVLGYEFALPAEEMLWNYTNDLRRHFKIADRVKA 160 >gi|87199343|ref|YP_496600.1| 30S ribosomal protein S1 [Novosphingobium aromaticivorans DSM 12444] gi|87135024|gb|ABD25766.1| SSU ribosomal protein S1P [Novosphingobium aromaticivorans DSM 12444] Length = 566 Score = 40.4 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+II G VK + VDLG DG++ + E + GD V+ I + Sbjct: 197 KEGQIIDGVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVRVQIIRIN 256 Query: 191 REQ 193 ++ Sbjct: 257 QDT 259 >gi|237743636|ref|ZP_04574117.1| LytB protein [Fusobacterium sp. 7_1] gi|229432667|gb|EEO42879.1| LytB protein [Fusobacterium sp. 7_1] Length = 827 Score = 40.4 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 + P +IG V + +D ++ + + +R++ + E+K VG + Sbjct: 686 EETPKFEIGNEVELKITELDLNNKKIKGSLKA----LRKSPWEHVLEEYK--VGTTVEKK 739 Query: 146 VKRV-EYGNVIVDLGNSDGVIR----RDETIS--RENLRPGDRVKSYIYDVRREQRGPQV 198 +K V ++G I + DG I E I R+ + GD VK+ + +V ++ + ++ Sbjct: 740 IKTVADFGLFIELIKGIDGFIPTQFASKEFIKNIRDKFKEGDIVKAQVVEVNKDTQKIKL 799 >gi|269925713|ref|YP_003322336.1| sigma-70 region 4 domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789373|gb|ACZ41514.1| sigma-70 region 4 domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 785 Score = 40.4 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 5/147 (3%) Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + +Q + +I + L + G V++LA I +I G+ Q Sbjct: 83 EGIDLSQTSLSSIGLPSWAQTPLASAGITTVQDLASASTFYIRAILGY----VGRSQALV 138 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++Y E + L + + V L ++ + +I+ L GI T + L + ++LL Sbjct: 139 KQYTEEYLMKLLRLSKSHEVDNSLENLQ-LSPRIRGILRRAGIFTADQLYRLTDEELLKL 197 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVES 500 +E+ K +E Sbjct: 198 KGIGKAALEEIKAVKLGDADNKRSIEE 224 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 14/161 (8%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 TEE + + ++ + + I +L G ++L + E+ ++G Sbjct: 141 YTEEYLMKLLRLSKSHEVDNSLENLQLSPRIRGILRRAGIFTADQLYRLTDEELLKLKGI 200 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG-----------IDSKIKVA 450 + EI +A + + + ++ ++ + + IPG + I Sbjct: 201 GKAALEEI--KAVKLGDADNKRSIEEEKQR-LDDAGIKIPGGISEHPISKLPLSMSIIHR 257 Query: 451 LGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSL 491 L GIKT+ D+ G + L ++ + S Sbjct: 258 LELAGIKTIGDITGENFSRLQEIPRIGKVTAKRILEAIQSY 298 >gi|326932793|ref|XP_003212497.1| PREDICTED: DNA polymerase beta-like [Meleagris gallopavo] Length = 298 Score = 40.4 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKVALGEN 454 IE + +I + E+L + +KIR+ S L + GI E Sbjct: 21 IEEIQDGVGAKIAEKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEE 80 Query: 455 GIKTMEDL 462 GIKT+EDL Sbjct: 81 GIKTLEDL 88 >gi|312891743|ref|ZP_07751251.1| SSU ribosomal protein S1P [Mucilaginibacter paludis DSM 18603] gi|311295774|gb|EFQ72935.1| SSU ribosomal protein S1P [Mucilaginibacter paludis DSM 18603] Length = 677 Score = 40.4 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDL 158 P+ P DF A REA F GEIISG V + +V++++ Sbjct: 62 PVKPEDFDWDADDKKFGNYSDSDREALEKMYDGTFSSINKGEIISGVVVNINNKDVVLNI 121 Query: 159 G-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 G SDG++ E +L+ GD V ++ + + G Q++LSR Sbjct: 122 GFKSDGLVSLSEFRDTPDLKVGDEVDVFVES-QEDANG-QLVLSR 164 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D + +G + + ++ V + +V+I+ E ++ Sbjct: 206 EAFLPGSQIDIKPIRDYD--VYVGKTMEFKVVKINHEFKNVVVSHKVLIEDDLENQKTEI 263 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ GTVK + V +DLG DG++ + +E L ++ Sbjct: 264 VAKLE--KGQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWGRIEHPKEVLSLDQKINV 321 Query: 185 YIYDVRREQR 194 + D E++ Sbjct: 322 VVLDFDDEKK 331 >gi|218295918|ref|ZP_03496698.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23] gi|218243656|gb|EED10184.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23] Length = 530 Score = 40.4 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 44/193 (22%) Query: 42 LYGTMSDIRV-EINPETGDISLFRLLE------------------------------VVE 70 G ++V +++PETG I L R VV Sbjct: 80 KPGDEVRVQVLKVDPETGQILLSRKKVEATEHWDRIQELYEKGEPVTVTVKEKVKGGVVA 139 Query: 71 EVENYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 E+++ I L + R + +G + + + V +++ + + E ++ Sbjct: 140 ELDSVRAFIPASQLDLRRIPNLDAYVGQQLLVKIIEFHRKKGRVLLSRRAV---LEEEQK 196 Query: 128 DRQYLEFKDKV-GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 + F+ G+++ GTV V V+LG DG++ R E RE L G Sbjct: 197 KAKEAFFQSLEPGQVVEGTVVDVTDFGAFVNLGPVDGLVHRSEITWGRFNHPREVLHKGQ 256 Query: 181 RVKSYIYDVRREQ 193 +V++ + V E+ Sbjct: 257 KVRAQVVSVDPEK 269 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET----ISRENLR----PGDRVKSYIY 187 + G++++G V V V VD+G ++G+I ++ +S E L+ PGD V+ + Sbjct: 31 RPGQVLTGKVVFVGSEGVAVDIGAKTEGIIPFNQLTEKPLSDEELKGLLKPGDEVRVQVL 90 Query: 188 DVRREQRGPQVLLSRTHPQFMV 209 V E Q+LLSR + Sbjct: 91 KVDPETG--QILLSRKKVEATE 110 >gi|238814375|ref|NP_001154949.1| RecA homolog RAD51 [Nasonia vitripennis] Length = 340 Score = 40.4 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 EEED + Q + + L G+ VE +A + +I+G E Sbjct: 11 EEEDYGDCQGQAKLIKTL--EGNGITAGDIKKLEEAGYFTVESVAYTPKKVLMAIKGISE 68 Query: 404 ETAVEIQGRARE 415 A +I A + Sbjct: 69 GKADKILQEASK 80 >gi|330752193|emb|CBL87151.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] Length = 740 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 115 KQVIIQKVREAERD-RQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRDET 170 K + +E E QY + +G EI+ G V + G+V++D+ SDG++ E Sbjct: 50 KHTLSYSEQEIEDYLNQYEQSLSTIGQNEIVLGKVTAIHDGDVVLDVNYKSDGLVSLSEF 109 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 +L+ GD V+ Y+ D + + RG Q++LSR + + Sbjct: 110 RDMPDLKIGDEVQVYVED-KEDLRG-QLVLSRKKAKLLKA 147 >gi|254779609|ref|YP_003057715.1| 30S ribosomal protein S1 [Helicobacter pylori B38] gi|254001521|emb|CAX29539.1| 30S ribosomal protein S1 [Helicobacter pylori B38] Length = 556 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|168021243|ref|XP_001763151.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685634|gb|EDQ72028.1| predicted protein [Physcomitrella patens subsp. patens] Length = 306 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 318 SLA---IGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 SLA IG+ G N + +LTG + I E D+ R + F Q +++ H Sbjct: 195 SLAGAIIGKGGINAKQICRLTGAKLSIKEHETDAGLRNVEMEGS---FEQIKQASQMVRH 251 Query: 375 LLVA 378 +L+ Sbjct: 252 VLIH 255 >gi|126465874|ref|YP_001040983.1| DNA repair and recombination protein RadA [Staphylothermus marinus F1] gi|126014697|gb|ABN70075.1| DNA repair and recombination protein RadA [Staphylothermus marinus F1] Length = 319 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL-EGIDI 422 V IA L A GF + + E+A G TA I AR+ L Sbjct: 12 DIPGVGPSIADKLEAAGFTTPWAIVVSRAEELAEKVGIPLHTAERIIANARKLLGIRFKT 71 Query: 423 TLQKKIRELGV 433 + K+ L V Sbjct: 72 AKEVKLERLSV 82 >gi|302755562|ref|XP_002961205.1| hypothetical protein SELMODRAFT_75886 [Selaginella moellendorffii] gi|302766770|ref|XP_002966805.1| hypothetical protein SELMODRAFT_86553 [Selaginella moellendorffii] gi|300164796|gb|EFJ31404.1| hypothetical protein SELMODRAFT_86553 [Selaginella moellendorffii] gi|300172144|gb|EFJ38744.1| hypothetical protein SELMODRAFT_75886 [Selaginella moellendorffii] Length = 213 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 321 IGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 IG+ G NV+ S++TG + I E D R + + Q + E++ LL Sbjct: 110 IGKAGANVKQISKVTGCKVSIRDHETDPNMRNVEMEGSLE---QIESASEMVRQLL 162 >gi|315231394|ref|YP_004071830.1| hypothetical protein TERMP_01632 [Thermococcus barophilus MP] gi|315184422|gb|ADT84607.1| hypothetical protein TERMP_01632 [Thermococcus barophilus MP] Length = 742 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 +G I G + RVE V V L + G+I+R + + + +PG + + DVR E+R Sbjct: 132 IGRIYKGVIDRVERFGVFVKLNPHVVGLIKRKDLLGGKEYKPGMEILVQVLDVRPEKR 189 >gi|83591633|ref|YP_425385.1| 30S ribosomal protein S1 [Rhodospirillum rubrum ATCC 11170] gi|83574547|gb|ABC21098.1| SSU ribosomal protein S1P [Rhodospirillum rubrum ATCC 11170] Length = 573 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P + V + MD R + +++ ++++ R ER + Sbjct: 142 PGSQVDIRPVRDIGPLLGQPQV--FQILKMDRARGNIVVSRRAVLEETRAEERSKLMETL 199 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + GEI+ G VK + VDLG DG++ + E L G VK + Sbjct: 200 --REGEILEGVVKNITDYGAFVDLGGVDGLLHVTDISWKRINHPTEALSIGQTVKVQVIR 257 Query: 189 VRREQ 193 E Sbjct: 258 FNAET 262 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] gi|18203646|sp|Q9YFZ1|RAD50_AERPE RecName: Full=DNA double-strand break repair rad50 ATPase gi|5103499|dbj|BAA79020.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 31/175 (17%) Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK---------ISEIASIEGF 401 R +D R + + +N + L GF E+LA + + E+ +E Sbjct: 510 RLQDKRRRIELLLSRLN---QLEEGLRELGFQTPEDLAKAEQKLRMLRERLEELRKLENS 566 Query: 402 DEETAVEI----------QGRAREYLEGIDITLQKKIRELG-VSEELCSIPGI----DSK 446 EE + + RA E L+ + I ++ +L +S E + + Sbjct: 567 LEEKVRNLSREEVALREAKTRALEVLQRLGIKEEEAREKLKTLSSESKKLERMLVSKAED 626 Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESM 501 + LG ++++DL + + L G + + L K++ + Sbjct: 627 LATRLGITAYRSLDDLLEKAREALEGV----DKELSAIERRLEEARRLKEEAAKL 677 >gi|15924466|ref|NP_372000.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50] gi|15927057|ref|NP_374590.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315] gi|148267960|ref|YP_001246903.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH9] gi|150394024|ref|YP_001316699.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH1] gi|156979795|ref|YP_001442054.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3] gi|253315983|ref|ZP_04839196.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006262|ref|ZP_05144863.2| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795469|ref|ZP_05644448.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781] gi|258413277|ref|ZP_05681553.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763] gi|258420616|ref|ZP_05683558.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A9719] gi|258426811|ref|ZP_05688031.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299] gi|258447357|ref|ZP_05695501.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300] gi|258449758|ref|ZP_05697859.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224] gi|258454572|ref|ZP_05702536.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A5937] gi|269203101|ref|YP_003282370.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98] gi|282928004|ref|ZP_06335613.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102] gi|295407225|ref|ZP_06817025.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819] gi|296275327|ref|ZP_06857834.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MR1] gi|297244649|ref|ZP_06928532.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796] gi|81705665|sp|Q7A5J0|RS1_STAAN RecName: Full=30S ribosomal protein S1 gi|81781569|sp|Q99U14|RS1_STAAM RecName: Full=30S ribosomal protein S1 gi|13701275|dbj|BAB42569.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315] gi|14247247|dbj|BAB57638.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50] gi|147741029|gb|ABQ49327.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus JH9] gi|149946476|gb|ABR52412.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156721930|dbj|BAF78347.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3] gi|257789441|gb|EEV27781.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781] gi|257839841|gb|EEV64309.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763] gi|257843564|gb|EEV67971.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A9719] gi|257849972|gb|EEV73930.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299] gi|257853548|gb|EEV76507.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300] gi|257857006|gb|EEV79906.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224] gi|257862955|gb|EEV85719.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A5937] gi|262075391|gb|ACY11364.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98] gi|282590301|gb|EFB95381.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102] gi|285817156|gb|ADC37643.1| SSU ribosomal protein S1p [Staphylococcus aureus 04-02981] gi|294967938|gb|EFG43967.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819] gi|297178679|gb|EFH37925.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796] gi|312829866|emb|CBX34708.1| 30S ribosomal protein S1 homolog [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129192|gb|EFT85187.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus CGS03] gi|329727548|gb|EGG64004.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus 21172] Length = 391 Score = 40.4 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIHGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895] gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895] Length = 1715 Score = 40.4 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 ++DK+G +I +V V+ N ++L +S ++L+ GD V+ +I V Sbjct: 1115 YEDKIGSMILASVVGVDVENKKINLSLRTEDATDRYILSHKDLKQGDVVRGFIKSV--TD 1172 Query: 194 RGPQVLLSRT 203 +G V LSRT Sbjct: 1173 KGIFVYLSRT 1182 >gi|169623440|ref|XP_001805127.1| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15] gi|160704983|gb|EAT77504.2| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15] Length = 1641 Score = 40.4 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L+V G+ VE +A + I+G E+ A ++ A + Sbjct: 46 IKLVVEGGYNTVESIAYTPRKALEQIKGISEQKASKLLAEASK 88 >gi|74001296|ref|XP_850102.1| PREDICTED: similar to SAM-domain protein SAMSN-1 (SAM domain, SH3 domain and nuclear localisation signals protein 1) (SH3-SAM adaptor protein) (Hematopoietic adaptor containing SH3 and SAM domains 1) [Canis familiaris] Length = 524 Score = 40.4 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 8/96 (8%) Query: 339 IDIITEEEDSINRQK-------DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +D+I+EEE + + K + + Q F++ I++ E + LL+ G+ +E+L +K Sbjct: 370 VDVISEEEAAPKKIKAHRKSGKEKPKTLQEFLERIHLQEYTSTLLL-NGYETLEDLKDIK 428 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 S + + + E + + A L+ I Q+ Sbjct: 429 ESHLIELNIKNPEDRMRLLSAAENLLDEETIQEQEN 464 >gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170] gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170] Length = 667 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 10/115 (8%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A + F +E LA + ++ ++ E+ A I R + + + L ++ Sbjct: 515 VGETVAKKVARA-FRSIEALATATLDDLIHVDEIGEKIAGSIL---RYFADEKNRNLIER 570 Query: 428 IR--ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 +R L + + + G L I A S D+ E GG Sbjct: 571 LRTAGLKLEADEEDLAGHTD----KLQGKSIVISGVFARHSRDEYKEMIEKHGGK 621 >gi|258444809|ref|ZP_05693138.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A8115] gi|282892973|ref|ZP_06301208.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117] gi|257850302|gb|EEV74255.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A8115] gi|282764970|gb|EFC05095.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117] Length = 391 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 40.0 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIHGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ V +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGVFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] Length = 663 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 E A L GFA +E + + + +E + A + E+L + L +++ Sbjct: 501 SEGTAARLCRAGFASLEAVLDAGVDGLVEVEDIGPKVAASLV----EHLTRLRPEL-ERL 555 Query: 429 RELGVSEELCS 439 RE GVS ++ Sbjct: 556 RERGVSLDVLE 566 >gi|225717836|gb|ACO14764.1| DNA repair protein RAD51 homolog 1 [Caligus clemensi] Length = 346 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 19/57 (33%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F ++ + L G+ VE + + +I+G E A ++ Sbjct: 27 FGPMPLSVLEQHGISAGDMKKLSEAGYHTVESIVYAPKKNLLAIKGISEAKADKLLA 83 >gi|218961511|ref|YP_001741286.1| 30S ribosomal subunit protein S1 (modular protein) [Candidatus Cloacamonas acidaminovorans] gi|167730168|emb|CAO81080.1| 30S ribosomal subunit protein S1 (modular protein) [Candidatus Cloacamonas acidaminovorans] Length = 932 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 115 KQVIIQKVREAERD-RQYLE-FKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET 170 K+ + Q+ +E + Y E F K GEII GTV + +V VD+G S+G+I E Sbjct: 89 KKELTQEEKEHQEMLSMYEESFSSFKKGEIIEGTVVDITDKDVRVDIGFKSEGIIPISEF 148 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 +K YI ++ + ++LLS+ +M+ + Sbjct: 149 AYTGIPELNSVIKVYINEIENGEG--KLLLSKKKADYMINI 187 >gi|157412946|ref|YP_001483812.1| ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215] gi|157387521|gb|ABV50226.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215] Length = 400 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRRE 192 K GE+I+ + G + D+ G I R + ++ + G +K +V E Sbjct: 212 SAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPE 271 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R +++LS + KL ++E+ ++ G V Sbjct: 272 SR--KLVLSEKKASLVSKLTNLELGQLIEGEV 301 >gi|18977765|ref|NP_579122.1| hypothetical protein PF1393 [Pyrococcus furiosus DSM 3638] gi|18893506|gb|AAL81517.1| hypothetical protein PF1393 [Pyrococcus furiosus DSM 3638] Length = 632 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 11/93 (11%) Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELG-----------VSEELCSIPGIDSKIKVAL 451 E E+ EY+E I +++ +E G E L SI GI K L Sbjct: 532 EPYVSEVPPEVPEYIEPPQIPKEEEDKERGKFSSGQSMGRDFEEFLLSIKGIGPKTIEKL 591 Query: 452 GENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 + GI ED +++L + +E+ Sbjct: 592 KKVGITKPEDFLNWKIEELAKKARVPKKRLERI 624 >gi|208434951|ref|YP_002266617.1| ribosomal protein S1 [Helicobacter pylori G27] gi|208432880|gb|ACI27751.1| ribosomal protein S1 [Helicobacter pylori G27] Length = 556 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|156849069|ref|XP_001647415.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM 70294] gi|156118101|gb|EDO19557.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM 70294] Length = 385 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L G E +A ++ +I+G E A ++ A Sbjct: 83 LRENGLHTAEAVAYAPRKDLLNIKGISEAKADKLLNEA 120 >gi|148263533|ref|YP_001230239.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4] gi|146397033|gb|ABQ25666.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4] Length = 584 Score = 40.4 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 8/112 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + M+ R + +++V++++ R+ R G+++ G VK + Sbjct: 173 IGETCKFKVLKMNRKRGNIVLSRRVLLEEERDKARTTTLATLS--EGDVVDGIVKNIADY 230 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 VDLG DG++ + E ++ GD +K + RE+ + Sbjct: 231 GAFVDLGGVDGLLHVTDMSWGRLNHPSEAVKVGDTIKVKVLKYDREKGKISL 282 >gi|308233483|ref|ZP_07664220.1| DNA-directed RNA polymerase subunit beta' [Atopobium vaginae DSM 15829] gi|328943547|ref|ZP_08241012.1| DNA-directed RNA polymerase subunit beta' [Atopobium vaginae DSM 15829] gi|327491516|gb|EGF23290.1| DNA-directed RNA polymerase subunit beta' [Atopobium vaginae DSM 15829] Length = 1485 Score = 40.4 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 19/149 (12%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGID 421 + V + + G V +L E+ I+G + E++ AR L ++ Sbjct: 1337 DDLGVSQRWTNKFSEVGIETVGDLIGKTEDELLRIDGIGAKAIEELREGLEARNLLYILE 1396 Query: 422 ITLQKKIRELGVSEELCSIPGI------DSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + SE+L + + D+ I + + D+ +G ++ Sbjct: 1397 PDEDEA-----DSEDLSQLLNMVFSPDPDNDIMLGTAAPATHHFTE------DEFIGGAD 1445 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIH 504 + + + ++ + S ++ Sbjct: 1446 SDEHDNSEDSDIINEDLDSLGDLLSSVMK 1474 >gi|210135214|ref|YP_002301653.1| 30S ribosomal protein S1 [Helicobacter pylori P12] gi|210133182|gb|ACJ08173.1| 30S ribosomal protein S1 [Helicobacter pylori P12] Length = 556 Score = 40.4 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 P + + + Q Q I K+ E + II G + G IV+ Sbjct: 92 EHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEGKIVGKNKGGYIVESQ 140 Query: 160 NSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + + R + + + G R+K+ I V +E + +SR Sbjct: 141 GVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|300176345|emb|CBK23656.2| unnamed protein product [Blastocystis hominis] Length = 316 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 26/55 (47%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 +++ ++ L G+ VE +A + ++ ++G E A ++Q A + + Sbjct: 6 LESQGINAATVKKLQEAGYHTVESVAFETMKKLVEVKGISEVNAQKLQAAASKLI 60 >gi|289449430|ref|YP_003475339.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183977|gb|ADC90402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 704 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 9/118 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D ++ P R+ V +++V++ + R A+ + VG+I G V Sbjct: 468 EDYKGKTIEILVTQFDPEK-KRMRVAGSRRVLLNRERAAKAAEVWNTLA--VGDIREGVV 524 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 + + VD+G DG++ E E ++ GD ++ Y+ + E++ + Sbjct: 525 RSLTDFGAFVDIGGVDGLVHVSELSWNRIKHPSEVIKVGDHIQVYVKEFDPERKRISL 582 >gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium hathewayi DSM 13479] gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium hathewayi DSM 13479] Length = 367 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ-------- 120 V V + + ++ AR P+ + D + A Q + VI + Sbjct: 114 VAAVLDGGLSVVVEGARVFIPASLVSDTYE-----KDLSKYADQEIEFVITEFNPKRRRI 168 Query: 121 -----KVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDET--- 170 ++ A R E +++ G+++ GT+K V +DLG +DG++ E Sbjct: 169 IGDRKQLMVARRAEMQKELFERIHPGDVVEGTIKNVTDFGAFIDLGGADGLLHISEMSWG 228 Query: 171 ---ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + G++++ I D+ G ++ LS P+ Sbjct: 229 RVESPKKVFKAGEKMRVLIKDI----NGDKIALSLKFPE 263 >gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+] gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+] Length = 1779 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%) Query: 134 FKD-KVGEIISGTVKRVEYGNVIVDLGNSD---GVIRRDETISREN------LRPGDRVK 183 F D K G+I++G V++VE +D+ SD G+ R E R GD+VK Sbjct: 1289 FSDLKEGQIVTGKVRKVEDFGAFIDIDGSDRLSGLCHRSEMADRAIKDAKALYSEGDKVK 1348 Query: 184 SYIYDVRREQR 194 + + V + + Sbjct: 1349 ARVLKVEEKTK 1359 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 VK ++ G ++ G G + E +E+ R G + Y+ E++ ++ Sbjct: 637 IVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKEHFREGQTISVYVLSFDPEEK--RM 694 Query: 199 LLSRTHP 205 ++S P Sbjct: 695 IVSCKDP 701 >gi|322708659|gb|EFZ00236.1| DNA repair protein RAD51 [Metarhizium anisopliae ARSEF 23] Length = 1532 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L++ GF VE +A + I+G E+ A +I G A + Sbjct: 39 IQLVMDGGFNTVESVAYTPRRMLEQIKGISEQKAQKILGEASK 81 >gi|257064689|ref|YP_003144361.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476] gi|256792342|gb|ACV23012.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476] Length = 407 Score = 40.4 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 9/85 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G+++ GTV ++E+ V++D+G S+GVI E E + GD +++ + + Sbjct: 33 EGDLVKGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDADPSEIVAEGDEIEALVL--Q 90 Query: 191 REQRGPQVLLSRTHPQFMVKLFHME 215 +E + +++LS+ ++ +E Sbjct: 91 KEDKDGRLILSKKRAEYERAWISVE 115 >gi|311274309|ref|XP_003134280.1| PREDICTED: hypothetical protein LOC100526021 [Sus scrofa] Length = 567 Score = 40.4 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|108563418|ref|YP_627734.1| 30S ribosomal protein S1 [Helicobacter pylori HPAG1] gi|107837191|gb|ABF85060.1| ribosomal protein S1 [Helicobacter pylori HPAG1] Length = 556 Score = 40.4 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|82751072|ref|YP_416813.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122] gi|82656603|emb|CAI81027.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122] Length = 391 Score = 40.4 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTRHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 >gi|254572065|ref|XP_002493142.1| Strand exchange protein, forms a helical filament with DNA that searches for homology [Pichia pastoris GS115] gi|238032940|emb|CAY70963.1| Strand exchange protein, forms a helical filament with DNA that searches for homology [Pichia pastoris GS115] gi|328352840|emb|CCA39238.1| DNA repair protein rhp51 [Pichia pastoris CBS 7435] Length = 362 Score = 40.0 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 24/55 (43%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 ++ + L+ G+ VE +A + +++G E A ++ A +++ Sbjct: 48 LEGNGISPGDIRKLMEAGYNTVEAIAYTPKRALLTVKGISEIKADKLLAEASKFV 102 >gi|229918700|ref|YP_002887346.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] gi|229470129|gb|ACQ71901.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] Length = 382 Score = 40.0 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 11/70 (15%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVRR 191 G+I++GTV ++E ++D+G ++ ++ E S E+L+ D ++ + V Sbjct: 16 GQIVTGTVVKIEDKQALIDIGYKTEAILPISEVSSMHLDDLNESLQVNDEIRVKVKKVTD 75 Query: 192 EQRGPQVLLS 201 E+ V++S Sbjct: 76 EE----VVVS 81 >gi|118101412|ref|XP_424407.2| PREDICTED: similar to DNA polymerase beta [Gallus gallus] Length = 335 Score = 40.0 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLDGVGAKIAEKI----DEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAAR 112 Query: 450 ALGENGIKTMEDL 462 E GIKT+EDL Sbjct: 113 KFVEEGIKTLEDL 125 >gi|261838388|gb|ACX98154.1| 30S ribosomal protein S1 [Helicobacter pylori 51] Length = 552 Score = 40.0 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 + + R +V K + QK++ + E + II G + Sbjct: 73 YQKNDPIIVHV-SEKGERPSVSYKKAISQQKIQAKIEE--LGE--NYENAIIEGKIVGKN 127 Query: 151 YGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 128 KGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|240102927|ref|YP_002959236.1| ski2-like helicase [Thermococcus gammatolerans EJ3] gi|239910481|gb|ACS33372.1| ski2-type helicase, putative [Thermococcus gammatolerans EJ3] Length = 720 Score = 40.0 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ N+ A L GF VE +A K +E+ ++EG + I +L Sbjct: 647 LVRLPNIGRKRARALYNAGFRSVEAIANAKPAELLAVEGIGAKILDGIYR----HLGIEK 702 Query: 422 ITLQKKIRELGVSEELC 438 ++K + G E+ Sbjct: 703 RVTEEKPKRKGTLEDFL 719 >gi|115394436|gb|ABI97150.1| Rad51 [Pneumocystis carinii] gi|115394438|gb|ABI97151.1| Rad51 [Pneumocystis carinii] Length = 343 Score = 40.0 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAI---NVDEIIAHLLVAEGFADVEELACVKISEI 395 +D EE + + ++ + + + ++ G+ VE +A I Sbjct: 3 LDEEPAEESTQDMNEEDIICGPTPLSKLEGNGISASDIKKIIEAGYNTVEAIAYTPKRAI 62 Query: 396 ASIEGFDEETAVEIQGRARE 415 I+G E A ++ A + Sbjct: 63 LLIKGISEAKADKLISEASK 82 >gi|260495755|ref|ZP_05815877.1| ribosomal protein S1 [Fusobacterium sp. 3_1_33] gi|260196713|gb|EEW94238.1| ribosomal protein S1 [Fusobacterium sp. 3_1_33] Length = 827 Score = 40.0 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 + P +IG V + +D ++ + + +R++ + E+K VG + Sbjct: 686 EETPKFEIGNEVELKITELDLNNKKIKGSLKA----LRKSPWEHVLEEYK--VGTTVEKK 739 Query: 146 VKRV-EYGNVIVDLGNSDGVIR----RDETIS--RENLRPGDRVKSYIYDVRREQRGPQV 198 +K V ++G I + DG I E I R+ + GD VK+ + +V ++ + ++ Sbjct: 740 IKTVADFGLFIELIKGIDGFIPTQFASKEFIKNIRDKFKEGDIVKAQVVEVNKDTQKIKL 799 >gi|11465811|ref|NP_053955.1| ribosomal protein S1 [Porphyra purpurea] gi|1710701|sp|P51345|RR1_PORPU RecName: Full=30S ribosomal protein S1, chloroplastic gi|1276811|gb|AAC08231.1| 30S ribosomal protein S1 [Porphyra purpurea] Length = 263 Score = 40.0 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE-------TISRENLRPGDRVKSYIYDVR 190 VG II G + ++ + + GN G++ E I + GD +K+ I V Sbjct: 191 VGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPS-QFKIGDTIKAVIIHVD 249 Query: 191 REQRGPQVLLSRTH 204 ++Q ++ LS H Sbjct: 250 KKQG--RLSLSMKH 261 >gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030] gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030] Length = 491 Score = 40.0 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I++GTV +V++ V++D+G ++GVI E E ++ GD + + + + Sbjct: 34 GDIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDPDEVVQIGDEIDALVL--TK 91 Query: 192 EQRGPQVLLS 201 E + ++LLS Sbjct: 92 EDKEGRLLLS 101 >gi|88602302|ref|YP_502480.1| DNA topoisomerase [Methanospirillum hungatei JF-1] gi|88187764|gb|ABD40761.1| DNA topoisomerase I [Methanospirillum hungatei JF-1] Length = 931 Score = 40.0 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++EEE + + + + ++ I + + GF E++A + +A G Sbjct: 783 LSEEEAKTLKSEAISLIAKNQLKDIGIPAVSLKRYQEAGFLTPEDIASAHPAYLAFKTGI 842 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 ET + + L D K EL S+PG+ L GI + Sbjct: 843 SIETVGKHATLITQSLGKPDPVKISKKAFESGKIELTSLPGVGESTLEHLYRAGIFDKKS 902 Query: 462 L 462 L Sbjct: 903 L 903 Score = 37.7 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 71/174 (40%), Gaps = 9/174 (5%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 ++ + + + + E + L+ + EL+ ++ + +A G ++ A + A Sbjct: 665 IEQQKEHYAKMPAMTEALQQKLLDAKIFSLYELSKLEPAVLAKKLGITKKQAETLIHEAN 724 Query: 415 EYLEGIDITLQ--KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-- 470 + L+ I + K +++ + S +K+ E+GI + D+A +++ L Sbjct: 725 DVLDLIRRRSECKKFMKQFVPPKRGRSH----TKVMNGFTESGINCIGDIASATIESLKK 780 Query: 471 LGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK-MGWIEKEKVADEEVQ 523 G SE + ++ L + KD + RY+ G++ E +A Sbjct: 781 TGLSEEEAKTLKSEAISLIAKNQLKDIGIPAVSLKRYQEAGFLTPEDIASAHPA 834 >gi|15612047|ref|NP_223699.1| 30S ribosomal protein S1 [Helicobacter pylori J99] gi|12230557|sp|Q9ZKF6|RS1_HELPJ RecName: Full=30S ribosomal protein S1 gi|4155561|gb|AAD06555.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99] Length = 552 Score = 40.0 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|253732118|ref|ZP_04866283.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724165|gb|EES92894.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 398 Score = 40.0 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 21 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 80 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 81 VEFDEENETGAYI-LSR 96 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 151 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 208 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 209 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 261 >gi|332982232|ref|YP_004463673.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis 50-1 BON] gi|332699910|gb|AEE96851.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis 50-1 BON] Length = 718 Score = 40.0 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 VG+++SG V V +IV L G DGVI R+E E D +++ V Sbjct: 336 HVGQMVSGKVASVSDSEIIVSLGGKQDGVIPREEMGLDEGVSPSEVFHIDDDIEA---QV 392 Query: 190 RREQRGPQ--VLLSRTHPQFMVK 210 ++ R + ++LSR P + K Sbjct: 393 KKTARNEEDNLILSR-KPLLLRK 414 >gi|320142721|gb|EFW34524.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MRSA177] Length = 398 Score = 40.0 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 21 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 80 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 81 VEFDEENETGAYI-LSR 96 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 151 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 208 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 209 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 261 >gi|242399653|ref|YP_002995078.1| RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains [Thermococcus sibiricus MM 739] gi|242266047|gb|ACS90729.1| RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains [Thermococcus sibiricus MM 739] Length = 740 Score = 40.0 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ G + RVE V V L + G+I++ + + R +PG+ + + DVR E++ Sbjct: 132 VGKVYKGAIDRVERFGVFVSLNPHVTGLIKKKDLLGRREYKPGEEILVQVLDVRPEKKEV 191 Query: 197 QVLLSRTHPQFMVKLF---HMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++ S + ++F + V EI G++ + R R K+ Sbjct: 192 DLIES--ALRHYKEVFVKKELPVTEI--GVLTKEMAGRTIRIRGKI 233 >gi|150402395|ref|YP_001329689.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C7] gi|166218762|sp|A6VGG2|RADA_METM7 RecName: Full=DNA repair and recombination protein radA gi|150033425|gb|ABR65538.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C7] Length = 322 Score = 40.0 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTAEKLIEAGYLDFMKIATATIGELTDIEGISE 46 >gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863] gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863] Length = 441 Score = 40.0 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 24/118 (20%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE-------NLRPGDRVKSYIYDVR 190 G+I+ G V RV +++VD+G S+G+I +E R L+ GD V+ + V Sbjct: 56 GDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVLSVD 115 Query: 191 -REQRGPQVLLSRTHPQFMV----------KLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 + + G ++ R Q ++ EV E G + D G RA Sbjct: 116 TKGEGGLRISKRRADEQLAWAEVERKFEAGEVIEAEVTEAVKG-----GLVVDLGLRA 168 >gi|115488638|ref|NP_001066806.1| Os12g0497300 [Oryza sativa Japonica Group] gi|18874073|dbj|BAB85492.1| Rad51 [Oryza sativa Japonica Group] gi|18874075|dbj|BAB85493.1| Rad51 [Oryza sativa Japonica Group] gi|108862704|gb|ABA98592.2| DNA repair protein RAD51, putative, expressed [Oryza sativa Japonica Group] gi|113649313|dbj|BAF29825.1| Os12g0497300 [Oryza sativa Japonica Group] Length = 341 Score = 40.0 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +QA + + L G VE + ++ I+G E +I A + Sbjct: 31 LQASGIAALDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIEGASK 83 >gi|332977860|gb|EGK14610.1| hypothetical protein HMPREF9373_0701 [Psychrobacter sp. 1501(2011)] Length = 110 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Query: 45 TMSDIRVEINPETGDISL-----FRLLEVVEEVENYTCQISL---KVARDRDPSIDIGGV 96 +I VEI+ +TG+ + F ++E VEN QI L A + +I Sbjct: 6 EKDNIDVEIDADTGERTTRKGRGFAQETILELVENDKGQIVLRDSSDAENPLVTIAFSDK 65 Query: 97 VSDPL--PPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + D L G + +A Q ++QK Y E Sbjct: 66 IKDMLGREAHIIGHKMIHAAVQEMMQKQVSQWHANVYDE 104 >gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578] Length = 800 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 18/121 (14%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 G + + +D R +Q I+++ E F G I + R E Sbjct: 647 FQPGQEIEFCITRIDKKRRRIQIG----IKQLSEDPWKALAKAFP--EGSEIETKILRKE 700 Query: 151 YGNVIVDL-GNSDGVIRRDETIS---------RENLRPGDRVKSYIYDVRREQRGPQVLL 200 ++V++ G +G I + R+ L+ GD +++ + +++ +R +++L Sbjct: 701 PQGIVVEVQGGIEGFIPNRQLCDPAVETPENVRDRLKEGDTIRALVLELKPSKR--RLIL 758 Query: 201 S 201 S Sbjct: 759 S 759 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G+I+ G VK +DLG DG++ + ++ ++ G++V+ I + Sbjct: 428 KEGDIVEGVVKSFAPFGAFIDLGGFDGLLHLQDMSWGRAVRPKDYVKKGEKVRVKIIKMD 487 Query: 191 REQRGPQVLLS 201 REQ+ +V LS Sbjct: 488 REQQ--KVNLS 496 >gi|119485419|ref|ZP_01619747.1| RNA binding S1 [Lyngbya sp. PCC 8106] gi|119457175|gb|EAW38301.1| RNA binding S1 [Lyngbya sp. PCC 8106] Length = 295 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 27/141 (19%) Query: 116 QVIIQKVREAERDRQYLEFKDK------------VGEIISGTVKRVEYGNVIVDLGNSDG 163 Q++ + E +RDR L F + VG++I G V V+ V VDL G Sbjct: 158 QLLTVHILELDRDRNKLVFSQRLASESVSFGQLEVGQLIEGKVSSVKPFGVFVDLDGVTG 217 Query: 164 VIRRDETISREN------LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 +I E + G VK+ + D+ +R +V LS +L Sbjct: 218 LIHIKEVSQKYIESLPTLFPVGQAVKALVIDLEEGRR--RVSLS-------TRLLENYPG 268 Query: 218 EIYNGIVQVKAVSRDPGSRAK 238 EI +V + RAK Sbjct: 269 EIVEKFPEVMDSAEARAERAK 289 >gi|328788487|ref|XP_624827.3| PREDICTED: DNA repair protein RAD51 homolog 1 [Apis mellifera] Length = 341 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 343 TEEEDSINRQKDFNERTQFF--MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 T +++N + + ++ + L G+ VE +A + +I+G Sbjct: 7 TASLQGDEEFEEYNPQAKLIKTLEGNGITAGDVKKLEEAGYYTVEAVAYAPKKCLIAIKG 66 Query: 401 FDEETAVEIQGRARE 415 E A +I A + Sbjct: 67 ISEAKADKILQEASK 81 >gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27] gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27] Length = 575 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIP 441 +EE+A + + G + A +I E+L + +++ + E+ +P Sbjct: 44 IEEIAEKGKEALMELPGVGPDLAEKIL----EFLRTGKVRKHEELSQKVPRGVLEVMEVP 99 Query: 442 GIDSKIKVALGEN-GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKD 496 G+ K L E GI ++E L + D + KG ++ + L + Sbjct: 100 GVGPKTARLLYEGLGIDSLEKL--KAALDRGDLTRLKGFGPKRAERIREGLALAQA 153 >gi|317009664|gb|ADU80244.1| 30S ribosomal protein S1 [Helicobacter pylori India7] Length = 556 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio] Length = 1431 Score = 40.0 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 30/142 (21%) Query: 97 VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE-----------FKD---KVGEII 142 + +P +D + Q+ Q I++ + + ++ Y F KVG+I+ Sbjct: 388 LKEPKEELDTNHLMSQT--QHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIV 445 Query: 143 SGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRG 195 GTV ++ V V +G + G+I R + PG +VK + V +++ Sbjct: 446 EGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKK- 504 Query: 196 PQVLLSRTHPQFMVKLFHMEVP 217 ++L+R L +P Sbjct: 505 -LLILTRK-----KALVESTLP 520 >gi|320100660|ref|YP_004176252.1| DEAD/DEAH box helicase domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753012|gb|ADV64770.1| DEAD/DEAH box helicase domain protein [Desulfurococcus mucosus DSM 2162] Length = 714 Score = 40.0 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 A +L+ GF + +LA +S IAS+ F + A E++ + RE Sbjct: 666 ARILIEHGFKTLRDLAEAPVSSIASLPRFGQRVAEEVERQLRE 708 >gi|325107428|ref|YP_004268496.1| 30S ribosomal protein S1P [Planctomyces brasiliensis DSM 5305] gi|324967696|gb|ADY58474.1| SSU ribosomal protein S1P [Planctomyces brasiliensis DSM 5305] Length = 608 Score = 40.0 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 12/125 (9%) Query: 82 KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 + + +P +IG + L ++ + +K+ ++RE +R + G+I Sbjct: 79 EEWEEGEPDPEIGQTIEVLLEDIEDIHGVILLSKRK-ADRIRE--WERIIA--RCDEGDI 133 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDE---TISRENLR-PGDRVKSYIYDVRREQRGPQ 197 I+GTV R G ++V++G + + + + G ++ I + +R Sbjct: 134 ITGTVVRKIKGGLLVNIG-VNVFLPASQVDIRRPNDIADFIGQEIECIILKIDEPRRN-- 190 Query: 198 VLLSR 202 +++SR Sbjct: 191 IVVSR 195 >gi|282916743|ref|ZP_06324501.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139] gi|283770548|ref|ZP_06343440.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19] gi|282319230|gb|EFB49582.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139] gi|283460695|gb|EFC07785.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19] gi|298694765|gb|ADI97987.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED133] gi|302333086|gb|ADL23279.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JKD6159] gi|329731355|gb|EGG67721.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 21193] Length = 391 Score = 40.0 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|170035198|ref|XP_001845458.1| DNA repair protein RAD51 [Culex quinquefasciatus] gi|167877010|gb|EDS40393.1| DNA repair protein RAD51 [Culex quinquefasciatus] Length = 349 Score = 40.0 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ + L GF VE +A ++ +I+G E A +I A + Sbjct: 38 LEGNGITSGDLKKLGEAGFHTVESVAFAPKKQLIAIKGISEAKADKIILEASK 90 >gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio] Length = 932 Score = 40.0 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 30/142 (21%) Query: 97 VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE-----------FKD---KVGEII 142 + +P +D + QS Q I++ + + ++ Y F KVG+I+ Sbjct: 388 LKEPKEELDTNHLMSQS--QHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIV 445 Query: 143 SGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRG 195 GTV ++ V V +G + G+I R + PG +VK + V +++ Sbjct: 446 EGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKK- 504 Query: 196 PQVLLSRTHPQFMVKLFHMEVP 217 ++L+R L +P Sbjct: 505 -LLILTRK-----KALVESTLP 520 >gi|89900358|ref|YP_522829.1| 30S ribosomal protein S1 [Rhodoferax ferrireducens T118] gi|89345095|gb|ABD69298.1| SSU ribosomal protein S1P [Rhodoferax ferrireducens T118] Length = 566 Score = 40.0 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G++++G VK V+ +DLG+ G +R E R L+ GD V + + +V Sbjct: 455 KGQVVTGKVKTVDAKGAEIDLGDDIIGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 514 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 515 RKTRNIQL 522 >gi|323439521|gb|EGA97242.1| 30S ribosomal protein S1 [Staphylococcus aureus O11] gi|323442240|gb|EGA99871.1| 30S ribosomal protein S1 [Staphylococcus aureus O46] Length = 391 Score = 40.0 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] Length = 680 Score = 40.0 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 34/135 (25%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E A LL F +++ L E+ IEG A + G R ++ + ++ Sbjct: 530 VGETSARLLARR-FKNIDALMEASPDELMQIEGVGMSIANSVVGYFRN---PVNREIVER 585 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 +R G ++ S D++ G ++ G G Sbjct: 586 LR------------GYGLQMA----------------LSADEMTGMTDRLAGKTVVISGV 617 Query: 488 LSSLGTPKDQVESMI 502 S +++ + MI Sbjct: 618 FSHH--SREEYKRMI 630 >gi|325954411|ref|YP_004238071.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922] gi|323437029|gb|ADX67493.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922] Length = 604 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D + +F V V K +I + E +++ Sbjct: 171 EAFLPGSQIDVKPIRDYDQYVGKTMEFKVVKINPEFKNVVVSH-KALIEADIEEQKKEIV 229 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 +K G+++ G VK + V VDLG DG+I + E L G ++ Sbjct: 230 AQ--LEK-GQVLEGEVKNITSYGVFVDLGGVDGLIHITDLSWSRINHPSEILEDGQKINV 286 Query: 185 YIYDVRREQRGPQV 198 I D ++ Q+ Sbjct: 287 VILDFDEDKSRIQL 300 >gi|217034328|ref|ZP_03439744.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10] gi|216943213|gb|EEC22680.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10] Length = 552 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|49483663|ref|YP_040887.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425540|ref|ZP_05601965.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428199|ref|ZP_05604597.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 65-1322] gi|257430829|ref|ZP_05607211.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 68-397] gi|257433588|ref|ZP_05609946.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus E1410] gi|257436429|ref|ZP_05612476.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876] gi|282904058|ref|ZP_06311946.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160] gi|282905822|ref|ZP_06313677.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282908793|ref|ZP_06316611.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911053|ref|ZP_06318855.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282914266|ref|ZP_06322053.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899] gi|282919189|ref|ZP_06326924.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427] gi|282924373|ref|ZP_06332047.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101] gi|283958240|ref|ZP_06375691.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus A017934/97] gi|293501291|ref|ZP_06667142.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 58-424] gi|293510253|ref|ZP_06668961.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809] gi|293526848|ref|ZP_06671532.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015] gi|295427984|ref|ZP_06820616.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591046|ref|ZP_06949684.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8] gi|81651112|sp|Q6GGT5|RS1_STAAR RecName: Full=30S ribosomal protein S1 gi|49241792|emb|CAG40483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MRSA252] gi|257271997|gb|EEV04135.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275040|gb|EEV06527.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 65-1322] gi|257278957|gb|EEV09576.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 68-397] gi|257281681|gb|EEV11818.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus E1410] gi|257284711|gb|EEV14831.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876] gi|282313760|gb|EFB44153.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101] gi|282316999|gb|EFB47373.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427] gi|282322334|gb|EFB52658.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899] gi|282324748|gb|EFB55058.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282327057|gb|EFB57352.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331114|gb|EFB60628.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282595676|gb|EFC00640.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160] gi|283790389|gb|EFC29206.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus A017934/97] gi|290920406|gb|EFD97470.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015] gi|291096296|gb|EFE26557.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 58-424] gi|291467197|gb|EFF09715.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809] gi|295128342|gb|EFG57976.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575932|gb|EFH94648.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8] gi|312438121|gb|ADQ77192.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus TCH60] Length = 391 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|169236999|ref|YP_001690199.1| DNA repair and recombination protein RadA [Halobacterium salinarum R1] gi|13878695|sp|Q9HMM4|RADA_HALSA RecName: Full=DNA repair and recombination protein radA gi|226736606|sp|B0R7Y4|RADA_HALS3 RecName: Full=DNA repair and recombination protein radA gi|167728065|emb|CAP14853.1| DNA repair protein [Halobacterium salinarum R1] Length = 343 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + V A L GF + LA +E+++ E TA ++ ARE + Sbjct: 6 LEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAAD 62 >gi|21283094|ref|NP_646182.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2] gi|49486315|ref|YP_043536.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650431|ref|YP_186360.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL] gi|87162219|ref|YP_494062.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195210|ref|YP_500011.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221597|ref|YP_001332419.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509643|ref|YP_001575302.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140957|ref|ZP_03565450.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733277|ref|ZP_04867442.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus TCH130] gi|258451134|ref|ZP_05699169.1| ribosomal protein S1 [Staphylococcus aureus A5948] gi|262048998|ref|ZP_06021877.1| 30S ribosomal protein S1 [Staphylococcus aureus D30] gi|262051645|ref|ZP_06023865.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3] gi|282921723|ref|ZP_06329440.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765] gi|284024474|ref|ZP_06378872.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 132] gi|294848439|ref|ZP_06789185.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754] gi|300911950|ref|ZP_07129393.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus TCH70] gi|304380941|ref|ZP_07363600.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81649285|sp|Q6G987|RS1_STAAS RecName: Full=30S ribosomal protein S1 gi|81694467|sp|Q5HFU7|RS1_STAAC RecName: Full=30S ribosomal protein S1 gi|81762485|sp|Q8NWM8|RS1_STAAW RecName: Full=30S ribosomal protein S1 gi|21204534|dbj|BAB95230.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2] gi|49244758|emb|CAG43194.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MSSA476] gi|57284617|gb|AAW36711.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL] gi|87128193|gb|ABD22707.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202768|gb|ABD30578.1| 30S ribosomal protein S1, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374397|dbj|BAF67657.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str. Newman] gi|160368452|gb|ABX29423.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728817|gb|EES97546.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus TCH130] gi|257861189|gb|EEV84002.1| ribosomal protein S1 [Staphylococcus aureus A5948] gi|259160486|gb|EEW45510.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3] gi|259162930|gb|EEW47493.1| 30S ribosomal protein S1 [Staphylococcus aureus D30] gi|269940967|emb|CBI49351.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus TW20] gi|282593985|gb|EFB98974.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765] gi|294824465|gb|EFG40888.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754] gi|300886196|gb|EFK81398.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus TCH70] gi|302751306|gb|ADL65483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340527|gb|EFM06462.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197777|gb|EFU28111.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus CGS01] gi|320140352|gb|EFW32208.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MRSA131] gi|329314152|gb|AEB88565.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus T0131] gi|329723178|gb|EGG59709.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 21189] Length = 391 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|317012828|gb|ADU83436.1| 30S ribosomal protein S1 [Helicobacter pylori Lithuania75] Length = 556 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|313202750|ref|YP_004041407.1| SSU ribosomal protein s1p [Paludibacter propionicigenes WB4] gi|312442066|gb|ADQ78422.1| SSU ribosomal protein S1P [Paludibacter propionicigenes WB4] Length = 682 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 19/150 (12%) Query: 67 EVVEEVENYTCQISLKVAR--DRDPSIDIGGVVSD----------PLPPMDFGRVAVQSA 114 EV+ VE + + V + V+ + P+P DF A + Sbjct: 10 EVIPTVEETVIEETQAVVETPAAAEEAPVVEVIEEAPTAKVKAPAPVPAGDFDWDAYE-- 67 Query: 115 KQVIIQKVREAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI 171 K + + + + ++ Y + K E++ GTV + V+V++G SDGV+ E Sbjct: 68 KGITLTDSAKEDLEKIYDNTLNAIKDKEVVEGTVILINKREVVVNVGYKSDGVVPMSEFR 127 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 +L GD+V+ YI + +++G Q++LS Sbjct: 128 YNPDLAVGDKVEVYIES-QEDKKG-QLILS 155 >gi|189423321|ref|YP_001950498.1| hypothetical protein Glov_0249 [Geobacter lovleyi SZ] gi|189419580|gb|ACD93978.1| conserved hypothetical protein [Geobacter lovleyi SZ] Length = 236 Score = 40.0 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 76/250 (30%), Gaps = 55/250 (22%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80 + D ++ + ++ K + + +R E G++ + Sbjct: 11 GLPEDEIVDAVECAVAKTLTAAFQRTVTVRAE-----GELEIIAY--------------- 50 Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 P + + P R + S + + ++ E + ++ G Sbjct: 51 --------PKLGHPVEMQLKDIPKKLRRHIIHSVEAELQKRQILLEAKKL----QELQGR 98 Query: 141 IISGTVKRV-EYGNVIVDLGNSD--------GVIRRDETISRE--NLRPGDRVKSYIYDV 189 + G V R+ G + V L D G E R G++ + V Sbjct: 99 VFCGAVGRIGSRGTLHVTLEIDDLLKPLILFGECPLRYQPPHERSRYRIGEQRSFLVTSV 158 Query: 190 RREQRG-----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA--VF 242 R G +++L+RT L GI +K R G +++ V Sbjct: 159 RPVMVGGDIAKVRLILNRTSRVLPALLLQD-----LTGIAGIKCRRRIAGGFSEVVTPVR 213 Query: 243 SSDSSIDPVG 252 SI+ VG Sbjct: 214 IPKKSINTVG 223 >gi|297207865|ref|ZP_06924298.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887439|gb|EFH26339.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 391 Score = 40.0 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.4 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEIVSIGQDVKVKIKSIDRDT 254 >gi|160900156|ref|YP_001565738.1| 30S ribosomal protein S1 [Delftia acidovorans SPH-1] gi|160365740|gb|ABX37353.1| ribosomal protein S1 [Delftia acidovorans SPH-1] Length = 561 Score = 40.0 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G+I+SG VK V+ +DLG + G +R E +R L+ GD + + + +V Sbjct: 450 KGQIVSGKVKTVDARGAEIDLGEDIIGYLRASEIAVDRVEDARSVLKEGDEITAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|258422493|ref|ZP_05685401.1| ribosomal protein S1 [Staphylococcus aureus A9635] gi|257847250|gb|EEV71256.1| ribosomal protein S1 [Staphylococcus aureus A9635] Length = 391 Score = 40.0 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|126277687|ref|XP_001370867.1| PREDICTED: similar to RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform 2 [Monodelphis domestica] Length = 242 Score = 40.0 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 L G+ VE +A E+ +++G E A +I A Y Sbjct: 41 LEEAGYHTVEAVAYAPKKELINVKGISEAKADKILVIAERY 81 >gi|110667057|ref|YP_656868.1| halomucin [Haloquadratum walsbyi DSM 16790] gi|118573792|sp|Q18DN4|HMU_HALWD RecName: Full=Halomucin; Flags: Precursor gi|109624804|emb|CAJ51211.1| halomucin [Haloquadratum walsbyi DSM 16790] Length = 9159 Score = 40.0 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 4/86 (4%) Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 +LA Q + W IT E + + + + A L G V++L Sbjct: 8819 AKLAIQSSAW----ITTVETRLWQLLSGEDSPSSSRSLAAIAGESASELNEVGVDSVDQL 8874 Query: 388 ACVKISEIASIEGFDEETAVEIQGRA 413 A ++AS DE E RA Sbjct: 8875 ASADPEQLASALEIDESAVAEWVNRA 8900 >gi|308184793|ref|YP_003928926.1| 30S ribosomal protein S1 [Helicobacter pylori SJM180] gi|308060713|gb|ADO02609.1| 30S ribosomal protein S1 [Helicobacter pylori SJM180] Length = 556 Score = 40.0 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|315195373|gb|EFU25760.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus CGS00] Length = 391 Score = 40.0 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.0 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + ++ V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELEPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|291234615|ref|XP_002737239.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 1-like [Saccoglossus kowalevskii] Length = 655 Score = 40.0 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + ++VP + IG++G N+RL +Q T +DI+ +E++ +K N +Q N Sbjct: 230 VRLLVPSSMVGAIIGKKGANIRLITQQTKAKVDILRSKENASALEKAINIY-GTPLQCSN 288 Query: 368 VDEIIAHLLVAE 379 E I +V E Sbjct: 289 TVEQIMETMVKE 300 >gi|283470687|emb|CAQ49898.1| putative 30S ribosomal protein S1 homolog [Staphylococcus aureus subsp. aureus ST398] Length = 391 Score = 40.0 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR 202 V + G + LSR Sbjct: 74 VEFDEENETGAYI-LSR 89 Score = 37.7 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D S+ G + + +D V +++ + Q+ +A++D+ G++I G V Sbjct: 144 EDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN--EGDVIDGKV 201 Query: 147 KRVEYGNVIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 R+ +D+G DG++ E E + G VK I + R+ Sbjct: 202 ARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254 >gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10] Length = 403 Score = 40.0 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER++ + + + VG++I G V R+ +D+G DG++ E Sbjct: 176 HKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKLA--VFSSDSSIDP 250 E+ +GI + VS P K+ V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342 >gi|313674969|ref|YP_004052965.1| SSU ribosomal protein s1p [Marivirga tractuosa DSM 4126] gi|312941667|gb|ADR20857.1| SSU ribosomal protein S1P [Marivirga tractuosa DSM 4126] Length = 660 Score = 40.0 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D + +G + + +++ V + +V+I+K E ++ Sbjct: 153 EAFLPGSQIDVKPIRDFD--VFVGKKMEVKVVKINYSNDNVVVSHKVLIEKDLEKQKAEI 210 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+++ G +K + V +DLG DG++ + E L+ ++VK Sbjct: 211 LNNLE--KGQVLEGVIKNMTNFGVFIDLGGVDGLLHITDISWGRINHPEEVLKLDEKVKV 268 Query: 185 YIYDVRREQRGPQV 198 + D ++ + Sbjct: 269 VVLDFDEGKKRISL 282 >gi|301757282|ref|XP_002914489.1| PREDICTED: SAM domain-containing protein SAMSN-1-like [Ailuropoda melanoleuca] Length = 440 Score = 40.0 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 8/96 (8%) Query: 339 IDIITEEEDSINRQK-------DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +D+I+EEE + + K + + Q F++ I++ E + LL+ G+ +E+L +K Sbjct: 286 VDVISEEEAAPKKIKAHRKSGKEKPKTLQEFLERIHLQEYTSTLLL-NGYETLEDLKDIK 344 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 S + + + E + + A L+ I Q+ Sbjct: 345 ESHLIELNIKNPEDRMRLLSAAENLLDEETIQEQEN 380 >gi|261855929|ref|YP_003263212.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2] gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2] Length = 560 Score = 40.0 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 22/123 (17%) Query: 82 KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK--DKVG 139 + A + + V + P ++ I +++ E D ++ ++ G Sbjct: 406 EEAVRQFKKGEEIEAVVIAIDPE----------RERISLGLKQLESDPI-GDYAADNQKG 454 Query: 140 EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN-------LRPGDRVKSYIYDVRR 191 +I++GTV+ V+ ++DLG +G +R + ISR+ L+ GD V++ + V R Sbjct: 455 KIVNGTVREVDARGAVIDLGEGVEGYLRASD-ISRDRIDDARTVLKEGDAVEAKVMGVDR 513 Query: 192 EQR 194 + R Sbjct: 514 KNR 516 Score = 37.4 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RD + G V + +D R V +++ ++++ AERD + + G ++ G V Sbjct: 145 RDTTYLEGKDVEFKIIKLDQKRNNVVVSRRAVVEQEYSAERDALLDQL--QEGMVLRGVV 202 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + +DLG DG++ + E + GD V + R++ Sbjct: 203 KNLTDYGAFLDLGGIDGLLHITDMAWKRVKHPSEVVNIGDEVDVKVLKFDRDRN 256 >gi|289581364|ref|YP_003479830.1| hypothetical protein Nmag_1692 [Natrialba magadii ATCC 43099] gi|289530917|gb|ADD05268.1| conserved hypothetical protein [Natrialba magadii ATCC 43099] Length = 652 Score = 40.0 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 V+ L + GF + ++ +E+A ++G D ET + Sbjct: 583 MPGVNHEEVRALRSAGFETIGDVQTATRAELADVDGLDGETVEAL 627 >gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Syntrophobotulus glycolicus DSM 8271] gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Syntrophobotulus glycolicus DSM 8271] Length = 662 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 8/112 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + D G+ + +++ I+ + RE E+++ + K G+++ G V+R+ Sbjct: 426 VGQTLRLRIIEFDEGKKKLVLSQKAILAEEREQEKEKLFATIK--EGDVVQGVVRRLTDF 483 Query: 153 NVIVDLGNSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQV 198 +DLG DG++ + + + GD V+ I V + + + Sbjct: 484 GAFIDLGGVDGLLHVSDMAFSRVSNPSDIVNIGDEVEVQIISVDQSKGRISL 535 >gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA] gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA] Length = 708 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 32/139 (23%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + IA LL A + +E L ++A+I+G + A + + + ++ Sbjct: 550 VGKTIAELLAAA-YPSIEALMEASEEDLAAIDGVGPKIA---RSAYLFLRTPDNAAVIER 605 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 +R GV+ LA + D+ + G G Sbjct: 606 LRSHGVA---------------------------LADKAADEGEQLPQTLAGLTFVLTGS 638 Query: 488 LSSLGTPKDQVESMIIHAR 506 L G +D+ + + AR Sbjct: 639 LVESGMTRDEAGAA-LKAR 656 >gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540] gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540] Length = 410 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + I+Q E + + + G+++ G V R+ Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQP--GDVVEGKVARMTNFG 216 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 +DLG DG++ E + L G VK + +V E+ Sbjct: 217 AFIDLGGVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPER 262 >gi|119703755|ref|NP_002283.3| laminin subunit beta-2 precursor [Homo sapiens] gi|156630892|sp|P55268|LAMB2_HUMAN RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin B1s chain; AltName: Full=Laminin-11 subunit beta; AltName: Full=Laminin-14 subunit beta; AltName: Full=Laminin-15 subunit beta; AltName: Full=Laminin-3 subunit beta; AltName: Full=Laminin-4 subunit beta; AltName: Full=Laminin-7 subunit beta; AltName: Full=Laminin-9 subunit beta; AltName: Full=S-laminin subunit beta; Short=S-LAM beta; Flags: Precursor gi|119585362|gb|EAW64958.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens] gi|119585363|gb|EAW64959.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens] gi|225000494|gb|AAI72384.1| Laminin, beta 2 (laminin S) [synthetic construct] Length = 1798 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLE-------GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++ Q+ + ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|8170714|gb|AAB34682.2| laminin beta 2 chain [Homo sapiens] Length = 1798 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLE-------GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++ Q+ + ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|1335202|emb|CAA56130.1| beta2/S laminin chain [Homo sapiens] Length = 1798 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLE-------GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++ Q+ + ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|1103585|emb|CAA92279.1| laminin beta 2 chain [Homo sapiens] Length = 1798 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLE-------GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++ Q+ + ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|257387245|ref|YP_003177018.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei DSM 12286] gi|257169552|gb|ACV47311.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei DSM 12286] Length = 349 Score = 40.0 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ + V A L GF + +A E+++ E +A +I ARE + Sbjct: 4 SEDLEELPGVGPATAEKLKDNGFDGYQGIAVASPGELSNTADIGESSAADIIQAAREAAD 63 >gi|296121873|ref|YP_003629651.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776] gi|296014213|gb|ADG67452.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776] Length = 597 Score = 40.0 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR-ENLRPGDRVKSYIYDVRRE 192 V II GTV R+E V++D+G S+G++ RDE E PG R+ + ++ E Sbjct: 50 VNSIIEGTVIRIEGDEVLIDIGYKSEGIVPRDEWSDEDEQPIPGMRIAVLLEEIEDE 106 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 10/128 (7%) Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V Q+ ++ R D G + + +D R + +++ +I++ RE + Sbjct: 156 VFLPASQVDIR--RPHDLDSYKGRSIECLILKIDEQRRNIVVSRRRLIEEQREKMKKTLL 213 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSY 185 + K GEI GTVK + VDLG DG++ + E ++ D V+ Sbjct: 214 ADLK--EGEIRKGTVKNIADFGAFVDLGGIDGLLHITDMSWGRIGHPSEMVKIDDEVEVM 271 Query: 186 IYDVRREQ 193 I + R++ Sbjct: 272 ILHIDRDR 279 Score = 37.0 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 46/117 (39%), Gaps = 21/117 (17%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 + + D + + + + +RE K G+++ G V R Sbjct: 97 AVLLEEIEDEFGLIMLSKKKADRIR-EWEKVIREH-----------KEGDVVKGEVVRKI 144 Query: 151 YGNVIVDLGNSDGVIRRDET-ISR----ENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 G ++V++G + + + I R ++ + G ++ I + ++R +++SR Sbjct: 145 KGGLLVNIG-VNVFLPASQVDIRRPHDLDSYK-GRSIECLILKIDEQRRN--IVVSR 197 >gi|325969248|ref|YP_004245440.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia 768-28] gi|323708451|gb|ADY01938.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia 768-28] Length = 318 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + A LL ++G V LA E+ + + +I AR+ Sbjct: 8 LEDLEGIGPKTAQLLKSKGILSVRHLALFNPEELIELTDMTPDRVEKILRSARD 61 >gi|253569882|ref|ZP_04847291.1| 30S ribosomal protein S1 [Bacteroides sp. 1_1_6] gi|251840263|gb|EES68345.1| 30S ribosomal protein S1 [Bacteroides sp. 1_1_6] Length = 599 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAER--DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V E E+ D + D+ E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENGEAVTSASHEELEKAYDGTLNKVNDR--EVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|257784765|ref|YP_003179982.1| RNA binding S1 domain-containing protein [Atopobium parvulum DSM 20469] gi|257473272|gb|ACV51391.1| RNA binding S1 domain protein [Atopobium parvulum DSM 20469] Length = 418 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G++++GTV ++E V+VD+G S+GVI E E + G+ V++ + + Sbjct: 33 EGDLVNGTVVKIERDEVLVDIGYKSEGVIPARELSIRKDVNPAEIISLGEDVEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKEGRLVLS 101 >gi|150021498|ref|YP_001306852.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Thermosipho melanesiensis BI429] gi|149794019|gb|ABR31467.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosipho melanesiensis BI429] Length = 810 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Query: 127 RDRQYLEFKDKV-GEIISGTVKRVEYGNVIVDL-GNSDGVIRRD------ETISRENLRP 178 +++ FK++ G+I+ G VKR+E V + +G++ E + + L Sbjct: 439 KEQVERFFKERKKGDIVEGIVKRIEDFGAFVRVAEGIEGLLPNSEVSYDYEISAMDVLGE 498 Query: 179 GDRVKSYIYDVRREQRG 195 G VK Y+ ++ + Sbjct: 499 GQSVKLYLKEIDPTNKK 515 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + ++ +G +++G V+ V VI+D+ G E + + G Sbjct: 614 WENIEEKYP--LGNVVTGIVRVVFDKGVIIDIEEGISGYCPISEISWNYISHPTDVIGEG 671 Query: 180 DRVKSYIYDVRREQRGPQVLLSRT 203 ++VK+ + D+ +E R ++ + RT Sbjct: 672 NKVKAVVLDLDKENRKIRLSIKRT 695 >gi|2108337|emb|CAA73605.1| Rad51 homologue [Trypanosoma brucei] Length = 313 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 M+ V L+ GF VE +A I +++G E A +I Sbjct: 1 MENYGVASADIKKLMECGFLTVESVAYAPKKSILAVKGISEAKAEKIMA 49 >gi|20067705|emb|CAD29094.1| chimeric DNA-directed DNA polymerase bf4-3a [synthetic construct] Length = 335 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|319942540|ref|ZP_08016850.1| 30S ribosomal protein S1 [Sutterella wadsworthensis 3_1_45B] gi|319803943|gb|EFW00861.1| 30S ribosomal protein S1 [Sutterella wadsworthensis 3_1_45B] Length = 574 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI--SRE-NLRPGDRVKSYIYDVRRE 192 + GE+I+ V RV+Y V+V+ G S+ + +E E ++PGD V I V Sbjct: 34 RQGEVITAEVVRVDYNFVVVNAGLKSEAYVPIEEFKDDKGEVTVQPGDFVSVAIESVENG 93 Query: 193 QRGPQVLLSR 202 +LSR Sbjct: 94 YGDT--ILSR 101 >gi|307595014|ref|YP_003901331.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550215|gb|ADN50280.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429] Length = 318 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + A LL ++G V LA E+ + + +I AR+ Sbjct: 8 LEDLEGIGPKTAQLLKSKGILSVRHLALFNPEELIELTDMTPDRVEKILRSARD 61 >gi|166363378|ref|YP_001655651.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843] gi|166085751|dbj|BAG00459.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843] Length = 293 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 22/132 (16%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET---- 170 K V+ Q RE R + VG+++SGTV +++ V VD G G++ + Sbjct: 171 KLVLSQ--REIARANAISQLA--VGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGAS 226 Query: 171 --ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + G +K + ++ + ++ LS K+ EI +V Sbjct: 227 FNSPMTFFKVGQAIKVVVAEIDEYKN--RISLS-------TKILEAHPGEILENFAEVME 277 Query: 229 VSRDPGSRAKLA 240 + R K A Sbjct: 278 TA---AERLKQA 286 >gi|168023386|ref|XP_001764219.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684659|gb|EDQ71060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 288 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 321 IGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 IG+ G NV+ S+LTG + I E ++ R + + Q E++ L Sbjct: 184 IGKAGANVKQISRLTGCKLTIRDHESNASMRNVEMEGTYE---QIERASEMVRQFL 236 >gi|78222685|ref|YP_384432.1| hypothetical protein Gmet_1473 [Geobacter metallireducens GS-15] gi|78193940|gb|ABB31707.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 174 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + Q + + E++A LV G E+L + + +++G + I +A Sbjct: 1 MKKSLQDLQKIRGIGEVLAKRLVEAGHDTYEKLQALGEDGLRAVKGINPRAIGSILSQAA 60 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449 E +E +++ EL + ++ G +I Sbjct: 61 ELVESKGKERARRVEELRSAA--LTLRGQVEEIAR 93 >gi|116621034|ref|YP_823190.1| 30S ribosomal protein S1P [Candidatus Solibacter usitatus Ellin6076] gi|116224196|gb|ABJ82905.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus Ellin6076] Length = 572 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 122 VREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRE 174 + E ER + + K GEI+ GT++ + VD+G D ++ + + Sbjct: 196 LEEEERASKEQRYSQVKEGEIVHGTIRSLTDYGAFVDIGGVDALLHVADISWGRVNKPAD 255 Query: 175 NLRPGDRVKSYIYDVRREQRGPQV 198 L GD+V++ I V ++ + Sbjct: 256 VLNVGDKVEAKILKVDPAKKRISL 279 >gi|317178641|dbj|BAJ56429.1| 30S ribosomal protein S1 [Helicobacter pylori F30] Length = 552 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4] gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4] Length = 391 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVR 190 G++++GTV ++E+ V++D+G S+GVI E + + GD +++ + + Sbjct: 33 EGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDLVSLGDTIEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKEGRLILS 101 Score = 37.4 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 R +D S +G + + MD R V +++V+++ R+AER + K G + G Sbjct: 155 RVKDLSAFMGERIESRVIEMDRNRNNVVLSRRVVLEAARKAERSEILDKLKP--GMKLKG 212 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 TV + VDLG DG+I E E ++ G V+ + DV + + Sbjct: 213 TVSSIVDFGAFVDLGGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLNRERISL 272 Query: 199 LLSRTHPQFMVKLFH 213 L +T L Sbjct: 273 GLKQTTEDPWRALIK 287 >gi|254578216|ref|XP_002495094.1| ZYRO0B03190p [Zygosaccharomyces rouxii] gi|238937984|emb|CAR26161.1| ZYRO0B03190p [Zygosaccharomyces rouxii] Length = 432 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIA---HLLVAEGFADVEELACVKISEIASIEGF 401 +D + + D + ++ + V+ I L G E +A ++ I+G Sbjct: 97 AQDEQDMEDDMALASFVPLEKLQVNGITTSDLKKLREFGLHTAEAVAYAPRKQLMEIKGI 156 Query: 402 DEETAVEIQGRA 413 E A + A Sbjct: 157 SEAKADRLLNEA 168 >gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70] gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70] Length = 712 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 45/203 (22%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K + R++ + +++Q+A + + + I ++S + T QI Sbjct: 513 KGLSREI----LEEALQQAKKGRMEILEHMMQTIREPRKELSKYAPKI-------LTMQI 561 Query: 80 SLKVARD-RDPSID----IGGVVSDPLPPMDFGRVAV--------QSAKQVIIQKVREAE 126 + + R+ PS I + G + + Q AKQ+I VRE E Sbjct: 562 NPEKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNQKAKQIIEDIVREVE 621 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-----GNSDGVIRRDETISR--ENLRPG 179 VG+I G VKR+E V+L G +E + R + + G Sbjct: 622 -----------VGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVSIG 670 Query: 180 DRVKSYIYDVRREQRGPQVLLSR 202 D + + ++ ++ R V LSR Sbjct: 671 DEILVKVMEIDKQGR---VNLSR 690 >gi|148594030|emb|CAL63584.1| ribosomal protein S1 [Sinorhizobium medicae] gi|148594058|emb|CAL63598.1| ribosomal protein S1 [Sinorhizobium medicae] gi|148594076|emb|CAL63607.1| ribosomal protein S1 [Sinorhizobium medicae] Length = 403 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|325106907|ref|YP_004267975.1| RNA polymerase subunit alpha domain protein [Planctomyces brasiliensis DSM 5305] gi|324967175|gb|ADY57953.1| RNA polymerase alpha subunit domain protein [Planctomyces brasiliensis DSM 5305] Length = 436 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 20/147 (13%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + +E++ R K + M + + L G +E+L + ++ + + F Sbjct: 268 MFYDEEAARRDKQLEQILSIPMSDFELSARSRNCLERAGIDRLEDLTKMSEEQLLAGKNF 327 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVS-----EELCSIPGIDSKIKVA------ 450 E + EI + LE + L + + + EEL + ++ V+ Sbjct: 328 GETSLKEI----KAILEMHGLKLGQNVHKKQPEPLYKPEELTPEERMIHEMTVSDLELSV 383 Query: 451 -----LGENGIKTMEDLAGCSVDDLLG 472 L GI T+ +L S D+LL Sbjct: 384 RARKCLARLGINTVGELVSRSADELLS 410 >gi|300778889|ref|ZP_07088747.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910] gi|300504399|gb|EFK35539.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910] Length = 596 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K +D D + +F V V K +I + +++ Sbjct: 159 EAFLPGSQIDVKPIKDYDQFVGKTMEFKVVKINPEFKNVVVSH-KALIEADIEGQKKEII 217 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 +K G+++ GTVK + V +DLG DG+I + E L G VK Sbjct: 218 AQ--LEK-GQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWSRVNHPSEILEDGQTVKV 274 Query: 185 YIYDVRREQRGPQV 198 I D E+ Q+ Sbjct: 275 VILDFDDEKTRIQL 288 >gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC 25986] gi|133776741|gb|EBA40561.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC 25986] Length = 369 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIR------RDETISRENLRPGDRVKSYIYDVR 190 G++++GTV ++E+ V+VD+G S+GVI R + + + GD +++ + + Sbjct: 14 EGDLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDANPADIVALGDPIEALVL--Q 71 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 72 KEDKDGRLVLS 82 >gi|114683626|ref|XP_001154786.1| PREDICTED: SAM domain-containing protein SAMSN-1 isoform 4 [Pan troglodytes] Length = 441 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 14/109 (12%) Query: 339 IDIITEEEDSINRQK-------DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +D+I+EEE + + K + ++ Q F++ I++ E + LL+ G+ +E+L +K Sbjct: 287 VDVISEEEAAPKKIKANRRSNSEKSKTLQEFLERIHLQEYTSTLLL-NGYETLEDLKDIK 345 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440 S + + + + + A +LE ++ +E G E S+ Sbjct: 346 ESHLIELNIENPDDRRRLLSAAENFLE------EEITQEQGNEPEPLSL 388 >gi|82703189|ref|YP_412755.1| 30S ribosomal protein S1 [Nitrosospira multiformis ATCC 25196] gi|82411254|gb|ABB75363.1| SSU ribosomal protein S1P [Nitrosospira multiformis ATCC 25196] Length = 571 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 19/130 (14%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE--IISGTVK 147 + G V + +D R + I +++ E D + F + I+ GTVK Sbjct: 417 NYKKGDEVEAVVLSIDVER-------ERISLGIKQLEGDP-FNSFVSVHDKNSIVKGTVK 468 Query: 148 RVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQVLL 200 ++ G VI + +G +R E R +L+ GD V++ I +V R+ RG + L Sbjct: 469 SIDAKGAVISLENDVEGYLRASEVSRDRVEDIRSHLKEGDVVEAMIINVDRKNRG--INL 526 Query: 201 SRTHPQFMVK 210 S + Sbjct: 527 SIKAKDMAEE 536 >gi|307637717|gb|ADN80167.1| SSU ribosomal protein S1p [Helicobacter pylori 908] gi|325996320|gb|ADZ51725.1| 30S ribosomal protein S1 [Helicobacter pylori 2018] gi|325997909|gb|ADZ50117.1| 30S ribosomal protein S1 [Helicobacter pylori 2017] Length = 552 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|153807671|ref|ZP_01960339.1| hypothetical protein BACCAC_01953 [Bacteroides caccae ATCC 43185] gi|149130033|gb|EDM21245.1| hypothetical protein BACCAC_01953 [Bacteroides caccae ATCC 43185] Length = 598 Score = 40.0 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAER--DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V E E+ D + D+ E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENGEAVTNASHEELEKAYDGTLNKVNDR--EVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|317182308|dbj|BAJ60092.1| 30S ribosomal protein S1 [Helicobacter pylori F57] Length = 552 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|224080955|ref|XP_002186553.1| PREDICTED: polymerase (DNA directed), beta [Taeniopygia guttata] Length = 335 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLDGVGAKIAEKI----DEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAAR 112 Query: 450 ALGENGIKTMEDL 462 E GIKT+EDL Sbjct: 113 KFVEEGIKTLEDL 125 >gi|322698012|gb|EFY89786.1| DNA repair protein RAD51 [Metarhizium acridum CQMa 102] Length = 348 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L++ GF VE +A + I+G E+ A +I G A + Sbjct: 39 IQLVMDGGFNTVESVAYTPRRMLEQIKGISEQKAQKILGEASK 81 >gi|317014439|gb|ADU81875.1| 30S ribosomal protein S1 [Helicobacter pylori Gambia94/24] Length = 552 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP + P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIVVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|148594040|emb|CAL63589.1| ribosomal protein S1 [Sinorhizobium meliloti] gi|148594042|emb|CAL63590.1| ribosomal protein S1 [Sinorhizobium meliloti] gi|148594070|emb|CAL63604.1| ribosomal protein S1 [Sinorhizobium meliloti] Length = 403 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|148594034|emb|CAL63586.1| ribosomal protein S1 [Sinorhizobium saheli] Length = 403 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|324504988|gb|ADY42150.1| Apoptosis-linked gene 2-interacting protein X 1 [Ascaris suum] Length = 878 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 3/154 (1%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +T ++ + ++ + A N D+I+ + E ++ L+ + A+I G Sbjct: 483 MTSDKLTAPLHQEVGKYRGILQAATNADQIVKQKM-DENREAIKLLSLPEPELRAAIPGL 541 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTME 460 D A ++ +D + KI + E + + + A+ ++ I E Sbjct: 542 DPANANRNSEAVKKLRSLMDTVQEIKIEREQLEREFADVHCDMTTVFLKAMADSQILNEE 601 Query: 461 DLAGCSVDDLLG-WSENKGGNIEKFDGFLSSLGT 493 L+ ++++ G + I+K + L+ + Sbjct: 602 QLSTAKINEIYGPLKDKVSETIKKQESCLAEVEM 635 >gi|313904089|ref|ZP_07837469.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6] gi|313471238|gb|EFR66560.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6] Length = 362 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 24/162 (14%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVA 110 E G++ +++ V+ N +++ AR P+ + L ++F + Sbjct: 105 ENGEVLTAKVVRVL----NGGLSVNVDGARVFIPASLVSDTFEKDLTKYMDQEIEFKIIE 160 Query: 111 VQSAKQVII---QKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVI 165 ++ II +++ AE+ + E VG+++ G VK + +DLG +DG++ Sbjct: 161 FNPKRRRIIGDRKQLVAAEKKKAQEELFSHITVGDVVEGVVKNITDFGAFIDLGGADGLL 220 Query: 166 RRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E + + GD++K I D+ +G ++ LS Sbjct: 221 HISEMSWGRVDNPKSIVAVGDKIKVLIKDI----KGDRIALS 258 >gi|298708904|emb|CBJ30860.1| rRNA biogenesis protein rrp5 [Ectocarpus siliculosus] Length = 2344 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 7/72 (9%) Query: 139 GEIISGTVKRVEYGNVIVD-LGNSDGVIRRD---ETI---SRENLRPGDRVKSYIYDVRR 191 G++I+G V RVE V V LG + R + + GD + + V Sbjct: 896 GDLIAGYVCRVESFGVFVRFLGRFTALCPRSMAADRMVEDPSGMFEEGDSARCVVQRVDE 955 Query: 192 EQRGPQVLLSRT 203 + V L RT Sbjct: 956 DTGRVVVTLDRT 967 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD-LGNSDGVI 165 + + K+ +++ RE Y E K++ G +G V +V + V GN G++ Sbjct: 633 SSKSTLTLKRSMVKDKREVI--STYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLL 690 Query: 166 RRDE------TISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E G V + P++ LS Sbjct: 691 PSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALS 732 >gi|220934863|ref|YP_002513762.1| RNA 3'-phosphate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219996173|gb|ACL72775.1| RNA 3'-phosphate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 348 Score = 40.0 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 6/89 (6%) Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ---KKIRELGVSEELCSIPGIDSK 446 + I ++++ EE A +GRA L+ ++ + + + L + + Sbjct: 189 LSIQGLSAVANLPEEIAERQRGRALRRLQTLNSDVDIAIEHLPACSPGTVLALLARFEQG 248 Query: 447 IK--VALGENGIKTMEDLAGCSVDDLLGW 473 ALGE G K E +A +VDDLLG+ Sbjct: 249 QACFFALGERG-KRAERVADEAVDDLLGF 276 >gi|307209304|gb|EFN86389.1| DNA polymerase beta [Harpegnathos saltator] Length = 333 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKVA 450 E + G ++ A I E+LE +++++ + L IPGI Sbjct: 61 EAMKLPGIGKKIADHI----NEFLETGTHKELQQVKKDDKQDAIILLMKIPGIGPAKAEQ 116 Query: 451 LGENGIKTMEDL 462 L GI+T+EDL Sbjct: 117 LISAGIETLEDL 128 >gi|261839788|gb|ACX99553.1| 30S ribosomal protein S1 [Helicobacter pylori 52] Length = 552 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|328787572|ref|XP_393878.3| PREDICTED: IGF-II mRNA-binding protein [Apis mellifera] Length = 626 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 37/132 (28%) Query: 251 VGACVGMRGSRVQAV------------------VTELRDEKIDIV-----VWSPDSATFV 287 VGA +G +GS ++ + V + D K+ IV W A ++ Sbjct: 416 VGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVDQQNDRKVTIVGSPESQW---KAQYL 472 Query: 288 I-NAL----RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 I + A V L IE++VP Q+ IG+ GQNVR ++TG I + Sbjct: 473 IFEKMREEGFVAGTEDVRL-----TIEILVPSTQVGRIIGKGGQNVRELQRVTGSIIKL- 526 Query: 343 TEEEDSINRQKD 354 +E++ + + Sbjct: 527 SEQQSTSPSADE 538 >gi|325971694|ref|YP_004247885.1| hypothetical protein SpiBuddy_1867 [Spirochaeta sp. Buddy] gi|324026932|gb|ADY13691.1| hypothetical protein SpiBuddy_1867 [Spirochaeta sp. Buddy] Length = 1983 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 21/150 (14%) Query: 328 VRLASQLTGWTI-DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 VR S+++G+ I + TE + + + F + Q ++ ++ + ++ +G DVE Sbjct: 1019 VRDESKMSGYKIRNAKTELLSDVRKYRRFYYTALGYTQQLSYEDTVEGTVLDDG-NDVEA 1077 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 +I ++ + D I+ + L + L ++ SK Sbjct: 1078 FGNEEIKKLLESDDTDPVLKELIR------------------KNLATGDVLQTLVDETSK 1119 Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 L E + E LA SVD+L +E Sbjct: 1120 QIEQL-EMEVMDAEALAESSVDELTEKTEQ 1148 >gi|182414675|ref|YP_001819741.1| ribosomal protein S1 [Opitutus terrae PB90-1] gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1] Length = 557 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 + I ++ ++ D + G + ++ R + +++ +I++ R +R Sbjct: 123 DAFMPASHIDVQPPKNLDQYV--GQTYDFKVLKINLERKNIVLSRRELIEEQRTNKRRAL 180 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + G+I G VK + +DL DG++ + E L+ G+ V+ Sbjct: 181 LDSIQP--GQIRRGVVKNITDFGAFIDLDGMDGLLHITDMSWGRISHPSEMLKQGEEVQV 238 Query: 185 YIYDVRREQ 193 I +V RE+ Sbjct: 239 MIIEVNREK 247 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K G I+ G + + V+VD+ G S+G++ +E I L+ G ++ + + + Sbjct: 18 KEGSIVPGVITEIRQNEVVVDIGGKSEGLVPANEFIDIGELQVGSTIEVLVQKLEGKDGA 77 Query: 196 PQVLLS 201 P +LS Sbjct: 78 P--ILS 81 >gi|167771538|ref|ZP_02443591.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM 17241] gi|167666178|gb|EDS10308.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM 17241] Length = 662 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 93 IGGVVSDPLPPMDFG-----RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 + ++ + + AV S + V+ ++ +E E ++G +G VK Sbjct: 429 LDDLLKQKVNFKILEVNRQRKRAVGSIRAVLREQRKELEDKFWQE---VEIGRHYTGVVK 485 Query: 148 RVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 + V+LG DG++ E E + GD V YI D+ E + + Sbjct: 486 SLTSYGAFVNLGGVDGMVHISELSWHRIKHPSEVVNVGDTVDVYIKDIDAENKKISL 542 >gi|14600570|ref|NP_147087.1| DNA-directed RNA polymerase subunit E' [Aeropyrum pernix K1] gi|5103650|dbj|BAA79171.1| DNA-directed RNA polymerase subunit E [Aeropyrum pernix K1] Length = 186 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 17/83 (20%) Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-----------------SRENL 176 FK EI+ G V R + ++V+LG DG + R++ + S+ + Sbjct: 80 FKPVQLEIVRGVVTRADDFGLVVNLGPLDGKVHRNQIMDEGVELLPDRSGFVGLASKREI 139 Query: 177 RPGDRVKSYIYDVRREQRGPQVL 199 R GD V++ + V R R Q++ Sbjct: 140 RVGDVVRARVVHVSRPSRTAQII 162 >gi|315586944|gb|ADU41325.1| 30S ribosomal protein S1 [Helicobacter pylori 35A] Length = 552 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + +V Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKVISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G I++ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIMESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] Length = 688 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--------RAREYLEG 419 V A L F VE++A + E+A I+G E A I R + Sbjct: 522 VGPTAAKALAKH-FESVEDIASASVEEMAGIDGVAETIAESISDWFTVDWHRRIVDRWAA 580 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + + ++ E + G+DS + L ++ED + + + K Sbjct: 581 AGVRMHQEAGEASGEAD-----GVDSALLEGLTIVVTGSLEDFDRTAAKEAIEARGGKAA 635 Query: 479 GNIEKFDGFL---SSLGTPKDQVESM 501 G++ K FL G+ + E + Sbjct: 636 GSVSKKTDFLVAGEKAGSKLKKAEDL 661 >gi|148555371|ref|YP_001262953.1| 30S ribosomal protein S1 [Sphingomonas wittichii RW1] gi|148500561|gb|ABQ68815.1| SSU ribosomal protein S1P [Sphingomonas wittichii RW1] Length = 569 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +DI + MD R + +++ ++++ R +R Sbjct: 141 PGSQVDIRPVRDVTPLMDIPQP--FQILKMDRRRGNIVVSRRAVLEETRAEQRSGLIQSL 198 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G++I G VK + VDLG DG++ + E + GD VK I Sbjct: 199 --HEGQVIEGVVKNITDYGAFVDLGGIDGLLHVTDLSYKRVGHPNEMINIGDVVKVQIIR 256 Query: 189 VRREQ 193 + ++ Sbjct: 257 INKDT 261 >gi|20067677|emb|CAD29080.1| chimeric DNA-directed DNA polymerase bf4-2 [synthetic construct] Length = 340 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|289609530|emb|CBI60430.1| unnamed protein product [Sordaria macrospora] Length = 150 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISREN--LRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E + L+ GD V+ Y+ V Sbjct: 24 EGRVVIGTVTGIENDLAVIDVGLKSEGRVPLREFAAPGQKADLKVGDEVEVYVDRVENAN 83 Query: 194 RGPQVLLSR 202 +LSR Sbjct: 84 GEA--MLSR 90 >gi|70939108|ref|XP_740140.1| Rad51 [Plasmodium chabaudi chabaudi] gi|56517647|emb|CAH76360.1| Rad51 homolog, putative [Plasmodium chabaudi chabaudi] Length = 324 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 LL G VE +A + + SI+G E+ A +++ +E Sbjct: 48 ELLKEGGLQTVECVAYAPMRTLCSIKGISEQKAEKLKKACKE 89 >gi|300855310|ref|YP_003780294.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium ljungdahlii DSM 13528] gi|300435425|gb|ADK15192.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium ljungdahlii DSM 13528] Length = 637 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 V G V S + ++ + RE ++ + + ++ G V+R+ Sbjct: 437 DVTIIEFKEEKKGTRIVASRRDLLRME-REKMEEQTWNVLE--KDTVVDGEVRRLTDFGA 493 Query: 155 IVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 VD+ DG++ E + L+ GD++K YI D+ RE Sbjct: 494 FVDVQGVDGLLHVSELSWGRVGKPSDVLKIGDKIKVYILDIDRE 537 >gi|221068235|ref|ZP_03544340.1| ribosomal protein S1 [Comamonas testosteroni KF-1] gi|264677562|ref|YP_003277468.1| ribosomal protein S1 [Comamonas testosteroni CNB-2] gi|299532470|ref|ZP_07045861.1| 30S ribosomal protein S1 [Comamonas testosteroni S44] gi|220713258|gb|EED68626.1| ribosomal protein S1 [Comamonas testosteroni KF-1] gi|262208074|gb|ACY32172.1| ribosomal protein S1 [Comamonas testosteroni CNB-2] gi|298719555|gb|EFI60521.1| 30S ribosomal protein S1 [Comamonas testosteroni S44] Length = 560 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G++++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQVVTGKVKTVDAKGAEIDLGEDIIGYLRASEISQDRVEDARSVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKSRNIQL 517 >gi|84996361|ref|XP_952902.1| DNA repair (Rad51 homologue) protein [Theileria annulata strain Ankara] gi|65303899|emb|CAI76278.1| DNA repair (Rad51 homologue) protein, putative [Theileria annulata] Length = 369 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 G++ +E +A + I+G E+ ++I+ RE Sbjct: 46 EAGYSTLECVAYAPQKNLLVIKGLSEQKVLKIKAACRE 83 >gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] Length = 665 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A +A+ F D+EEL + ++ +I+ E+ A I + ++ + K Sbjct: 515 VGETVAKK-IAKSFTDIEELENADLEKLKNIDEIGEKIAQSIITYFSNPV-NRELVERLK 572 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 L + + G L I S D+ E GG Sbjct: 573 SNGLQLHRTEEDLSGYTD----KLAGQSIVISGVFTHHSRDEYKEMIEKNGGK 621 >gi|148594064|emb|CAL63601.1| ribosomal protein S1 [Ensifer adhaerens] Length = 403 Score = 39.7 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|148594032|emb|CAL63585.1| ribosomal protein S1 [Ensifer adhaerens] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|148594036|emb|CAL63587.1| ribosomal protein S1 [Sinorhizobium arboris] gi|148594056|emb|CAL63597.1| ribosomal protein S1 [Sinorhizobium arboris LMG 14919] gi|148594072|emb|CAL63605.1| ribosomal protein S1 [Sinorhizobium arboris] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|148594022|emb|CAL63580.1| ribosomal protein S1 [Ensifer adhaerens] gi|148594024|emb|CAL63581.1| ribosomal protein S1 [Ensifer adhaerens] gi|148594026|emb|CAL63582.1| ribosomal protein S1 [Ensifer adhaerens] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|148594052|emb|CAL63595.1| ribosomal protein S1 [Sinorhizobium saheli] gi|148594074|emb|CAL63606.1| ribosomal protein S1 [Sinorhizobium saheli] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl] Length = 399 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G++ G V V V VD+G +DG++ E E L+ GD+VK I ++ Sbjct: 227 REGDVRDGVVSSVCDFGVFVDIGGADGLVHLSEISWSRVKHPGEVLKVGDKVKVAILNID 286 Query: 191 REQRGPQVLLSRTHPQFMVKLFHM-EVPEIYNGIVQ 225 E++ + + RT + ++ ++ +I G + Sbjct: 287 HERKRIALSIKRTQSEPWTRVAERYQLGQIVEGTIT 322 >gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032] gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032] Length = 670 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%) Query: 329 RLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN---VDEIIAHLLVAEGFADVE 385 +LAS L GW + ++ + F+ A+ V E+ A +L AE F ++ Sbjct: 484 KLAS-LDGWGE--KSARNILEAIEQRRSLPLAQFIAALGIRHVGEVTASVL-AEHFRELR 539 Query: 386 ELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433 EL K + +EG E+TA + ++ L + + +++ GV Sbjct: 540 ELMAAKKEALLRVEGIGEQTADSVIEYFQDPLT---VAMVEQLNRAGV 584 >gi|319780059|ref|YP_004139535.1| ribosomal protein S1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165947|gb|ADV09485.1| ribosomal protein S1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 565 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKAARSLYGTMSD---IR-------------VEINPETGDISLFRLLEV 68 +V + + +++ +A S + +R V N G ++ V Sbjct: 75 EVYVERIENALGEAMLSREKARREESWVRLEEKFTKGERVEGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVSPLMHNPQP--FEILKMDRRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|48478452|ref|YP_024158.1| ski2-like helicase [Picrophilus torridus DSM 9790] gi|48431100|gb|AAT43965.1| helicase involved in UV-protection [Picrophilus torridus DSM 9790] Length = 674 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ V + A L GF V+++A I I GF + A EI A Sbjct: 612 LIKIPKVGRVRARRLYDNGFKTVDDIARSSPENIEKIFGFSKNLAAEIVNSA 663 >gi|15645027|ref|NP_207197.1| 30S ribosomal protein S1 [Helicobacter pylori 26695] gi|2500384|sp|P56008|RS1_HELPY RecName: Full=30S ribosomal protein S1 gi|2313498|gb|AAD07462.1| ribosomal protein S1 (rps1) [Helicobacter pylori 26695] Length = 556 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G RVK+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRVKACIIRVDKENH--SINISR 182 >gi|317180145|dbj|BAJ57931.1| 30S ribosomal protein S1 [Helicobacter pylori F32] Length = 552 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 178 >gi|148594020|emb|CAL63579.1| ribosomal protein S1 [Ensifer adhaerens] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|154250605|ref|YP_001411429.1| 30S ribosomal protein S1 [Parvibaculum lavamentivorans DS-1] gi|154154555|gb|ABS61772.1| ribosomal protein S1 [Parvibaculum lavamentivorans DS-1] Length = 569 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P ++I + MD R + +++ ++++ R +R Sbjct: 142 PGSQVDIRPVRDVTPLMNIPQP--FQILKMDKRRGNIVVSRRAVLEETRAEQRQELVENL 199 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+++ G VK + VDLG DG++ + E L G VK + Sbjct: 200 K--EGQVLEGVVKNITDYGAFVDLGGVDGLLHVTDIAWRRVNHPTEVLSIGQTVKVQVIK 257 Query: 189 VRREQ 193 V E Sbjct: 258 VNHET 262 >gi|7407071|gb|AAF61901.1| RAD51 [Homo sapiens] Length = 75 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E A Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKA 71 Query: 407 VEIQ 410 +I Sbjct: 72 DKIL 75 >gi|207092930|ref|ZP_03240717.1| 30S ribosomal protein S1 [Helicobacter pylori HPKX_438_AG0C1] Length = 186 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 78 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 125 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R + + + G R+K+ I V +E + +SR Sbjct: 126 KIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|148594048|emb|CAL63593.1| ribosomal protein S1 [Sinorhizobium terangae] gi|148594050|emb|CAL63594.1| ribosomal protein S1 [Sinorhizobium terangae] gi|148594054|emb|CAL63596.1| ribosomal protein S1 [Sinorhizobium terangae] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|321250076|ref|XP_003191680.1| recombinase [Cryptococcus gattii WM276] gi|317458147|gb|ADV19893.1| Recombinase, putative [Cryptococcus gattii WM276] Length = 353 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +Q + L GF VE +A + +I+G E+ A +I A Sbjct: 34 LQEAGISAQDTKKLSDAGFHTVEAVAFTPKKTLCTIKGISEQKADKILAEA 84 >gi|294807103|ref|ZP_06765921.1| 30S ribosomal protein S1 [Bacteroides xylanisolvens SD CC 1b] gi|294445669|gb|EFG14318.1| 30S ribosomal protein S1 [Bacteroides xylanisolvens SD CC 1b] Length = 565 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V E ++ Y +KV E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENG--ETVTNVSHDELEKAYDGTLNKVNDREVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|94263173|ref|ZP_01286991.1| RNA binding S1 [delta proteobacterium MLMS-1] gi|93456544|gb|EAT06658.1| RNA binding S1 [delta proteobacterium MLMS-1] Length = 410 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 16/128 (12%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 Q+ L+ A +P +G S + + G+ + S +Q++ Q ER + Sbjct: 130 PYSQMDLRRA--ANPEEYLGQSFSFLIMEFREGGKNILLSRRQLLEQ-----ERQELKEQ 182 Query: 134 FKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE------NLRPGDRVKSY 185 + KVG++++GTV V VD+G +G+I E +L PG +V+ Sbjct: 183 LRQSLKVGDLVTGTVTSVRDFGAFVDIGGIEGLIPISEIGWGRVEDIHSHLEPGRQVEVA 242 Query: 186 IYDVRREQ 193 + + E+ Sbjct: 243 VKSLDWEK 250 >gi|159186030|ref|NP_356542.2| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58] gi|159141164|gb|AAK89327.2| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58] Length = 566 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMHNPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G +V Sbjct: 190 EIVQNLE--EGQVVDGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|106880497|ref|NP_001006894.2| DNA-directed DNA polymerase beta [Xenopus (Silurana) tropicalis] gi|89272500|emb|CAJ82346.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis] Length = 334 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKVA 450 E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 58 EAKKLDGVGAKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARK 113 Query: 451 LGENGIKTMEDL 462 L + GIKT++DL Sbjct: 114 LVDEGIKTLDDL 125 >gi|78043962|ref|YP_360744.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996077|gb|ABB14976.1| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1 [Carboxydothermus hydrogenoformans Z-2901] Length = 653 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 K GEI+ G V +V V+VD+G +GVI +E +R+ ++ GD + Sbjct: 290 KEGEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEEITWYRIERARDAVKEGDEFPVLVLKE 349 Query: 190 RREQRGPQVLLSR 202 E + ++LSR Sbjct: 350 DEEGK---IILSR 359 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G + G V ++ VDLG +G++R + E+L+ G ++ + +V Sbjct: 462 KEGSKVKGKVTKIMPFGAFVDLGGFEGLLRAQDISWQRNVRPEEHLQVGQELEVVVLEVD 521 Query: 191 REQ 193 R Sbjct: 522 RHN 524 >gi|150015374|ref|YP_001307628.1| 30S ribosomal protein S1 [Clostridium beijerinckii NCIMB 8052] gi|149901839|gb|ABR32672.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 384 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 29/172 (16%) Query: 43 YGTMSDIRVEINPET--------GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIG 94 + +I+V + ET G++ +F SL + S +G Sbjct: 108 FKEKKNIKVHVKEETKGGVIAYYGNVRVF-------------IPGSLASRERIELSSLVG 154 Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 + + +DF V +++++I ++ + + K GE +G VK++ Sbjct: 155 RDLDVRITELDFKNKKVIASRRIIEEEEYNKNKKNIWDNLK--EGEKRNGVVKKIVKFGA 212 Query: 155 IVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLL 200 VD+G +G+I + + ++ GD V+ +I +V R+ ++L Sbjct: 213 FVDIGGVEGLIHLSDLSWERVNKPEDIVKEGDNVEVFIGNVDRKNERLSLIL 264 >gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus SA-01] gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01] Length = 575 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 13/108 (12%) Query: 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL--CSIP 441 +EE+A + ++ G + A +I E+L+ +I +++ E L +P Sbjct: 44 IEEVAKGGREALLALPGIGPDLAEKIL----EFLKTGEIKKHRELAERVPKGVLAVMEVP 99 Query: 442 GIDSKIKVAL-GENGIKTMEDLAGCSVD-----DLLGWSENKGGNIEK 483 G+ K L E GI ++E L ++D L G+ + K I + Sbjct: 100 GVGPKTARQLYDELGIDSLEKLRE-ALDRGDLLRLKGFGQKKAERIRE 146 >gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] Length = 723 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN---VDEIIAHLLVAEGFADVEELAC 389 +L+GW + +E + + + A+ V E A LL F ++EEL Sbjct: 517 KLSGWGLK-KSENLLNQIEKSKSAPFWKKLT-ALGIRHVGEKTAQLLAKR-FKNIEELMN 573 Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433 +E+ASI G TA IQ + ++ + KK++E G Sbjct: 574 ADFTELASIPGIGPITATSIQNFFKA---EQNVEMIKKLQEAGF 614 >gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047] gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047] Length = 402 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER+ + + + VG++I G V R+ +D+G DG++ E Sbjct: 176 HKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSEGDVFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKLA--VFSSDSSIDP 250 E+ +GI + VS P K+ V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342 >gi|222530476|ref|YP_002574358.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222457323|gb|ACM61585.1| RNA binding S1 domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 254 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 15/116 (12%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ L+ +G ++ + + GR + K + R ++ Sbjct: 53 DEAELGLQEQVKNKADALLGALIEFVVIAQENGRFYISRVKAMEK---RRKIWEKV---- 105 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 K G+I+ G + V N +++ + + +E + R + + DRVK+ Sbjct: 106 --KEGDIVEGRITGVTPRNAFIEVLGYEFALPAEEMLWNYTNDLRRHFKIADRVKA 159 >gi|146296423|ref|YP_001180194.1| RNA-binding S1 domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409999|gb|ABP67003.1| RNA binding S1 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 258 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 18/112 (16%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + D + V +++V Q +R E + K G+II+G V V Sbjct: 70 LGATIEFVVT--DIQKDNVFISRKVAKQ-LRRIEFENNV-----KEGQIINGRVIGVSPK 121 Query: 153 NVIVDLGNSDGVIRRDE----TIS--RENLRPGDRVKSYIYDVRREQRGPQV 198 NV VD + + + I RE + GD VK+ + + PQ+ Sbjct: 122 NVYVDAFGYEFGLTAKDVDYKWIHDMRERFKVGDSVKAKVI----SKNPPQI 169 >gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36] gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36] Length = 665 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A +A+ F D+EEL + ++ +I+ E+ A I + L ++ Sbjct: 515 VGETVAKK-IAKSFTDIEELENADLEKLKNIDEIGEKIAQSIITYFSN---PANRELVER 570 Query: 428 IRELGV-----SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ G+ E+L G L I S D+ E GG Sbjct: 571 LKSNGLQLHRTEEDL---SGYTD----KLAGQSIVISGVFTHHSRDEYKEMIEKNGGK 621 >gi|148594012|emb|CAL63575.1| ribosomal protein S1 [Ensifer adhaerens] gi|148594014|emb|CAL63576.1| ribosomal protein S1 [Ensifer adhaerens] gi|148594018|emb|CAL63578.1| ribosomal protein S1 [Ensifer adhaerens] Length = 403 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 134 >gi|49257724|gb|AAH74537.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis] Length = 334 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKVA 450 E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 58 EAKKLDGVGAKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARK 113 Query: 451 LGENGIKTMEDL 462 L + GIKT++DL Sbjct: 114 LVDEGIKTLDDL 125 >gi|241889493|ref|ZP_04776792.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379] gi|241863800|gb|EER68183.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379] Length = 402 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 10/108 (9%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEY 151 +G + + +D + + ++VI + E + + + + G++I G V R+ Sbjct: 164 VGNEYTFKIEEVDKSKNKIILNRRVI---LEEEKAKKLAEVYGNINEGDVIEGKVSRITD 220 Query: 152 GNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQ 193 V++G DG++ E + L GD +K + V +E Sbjct: 221 FGAFVNIGEVDGLLHISEISHARVEKVADVLSVGDTIKVAVIAVDKEN 268 >gi|237653696|ref|YP_002890010.1| 30S ribosomal protein S1 [Thauera sp. MZ1T] gi|237624943|gb|ACR01633.1| ribosomal protein S1 [Thauera sp. MZ1T] Length = 567 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + +D R V +++ ++++ ER++ K G +I G V Sbjct: 149 KDTTPYEGKEYEFKVIKLDRKRNNVVVSRRAVLEESMGEEREKLLANLK--EGTVIKGVV 206 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L GD +++ + +E+ Sbjct: 207 KNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGDEIEAKVLKFDQEKN 260 Score = 36.6 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISREN------LRPGDRVKSYIYDVR 190 ++ GTVK VE ++ LG+ +G +R E + GD V++ + +V Sbjct: 457 KNSLVRGTVKSVEARGAVISLGDDVEGYLRASEAAPHRVDDLTTMFKEGDEVEALVINVD 516 Query: 191 REQRGPQVLLS 201 R+ R + LS Sbjct: 517 RKTR--SISLS 525 >gi|221124380|ref|XP_002163382.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 874 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG+ G +R E R L+ GD V + + +V Sbjct: 766 KGQTVTGKVKTVDAKGAEIDLGDDILGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 825 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 826 RKTRNIQL 833 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 121 KVREAERDRQYLEFKDK----VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE--TISR 173 K+ + E + GE+I+ V R+E+ V+V+ G S+ + +E + Sbjct: 315 KLMSESFAALFEESLQRSEMRTGEVITAEVVRIEHSFVVVNAGLKSEAYVPIEEFKSDKG 374 Query: 174 E-NLRPGDRVKSYIYDVRREQRGPQVLLSR 202 E ++ GD V I V +LSR Sbjct: 375 EIEVQVGDFVSVAIDSVENGYGDT--ILSR 402 >gi|149177996|ref|ZP_01856593.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797] gi|148843189|gb|EDL57555.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797] Length = 641 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK--VGEIISGTVKRV 149 DI + + + + V +K+ E +R++ + K G+I+ G VK + Sbjct: 174 DIANYIGRTIECVILKIDEARRNIVVSRRKLIEEKREKLKQDLLSKIEEGQIVKGIVKNI 233 Query: 150 EYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ + E ++ D ++ I V R++ Sbjct: 234 ADFGAFVDLGGIDGLLHITDMSWGRINHPTEIVKIDDEIEVMILSVDRDK 283 >gi|71028444|ref|XP_763865.1| DNA repair protein Rad51 [Theileria parva strain Muguga] gi|68350819|gb|EAN31582.1| DNA repair protein rad51, putative [Theileria parva] Length = 343 Score = 39.7 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 G++ +E +A + I+G E+ ++I+ RE Sbjct: 46 EAGYSTLECVAYAPQKNLLVIKGLSEQKVLKIKAACRE 83 >gi|332716826|ref|YP_004444292.1| 30S ribosomal protein S1 [Agrobacterium sp. H13-3] gi|325063511|gb|ADY67201.1| 30S ribosomal protein S1 [Agrobacterium sp. H13-3] Length = 566 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMHNPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G +V Sbjct: 190 EIVQNLE--EGQVVDGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|170591398|ref|XP_001900457.1| KH domain containing protein [Brugia malayi] gi|158592069|gb|EDP30671.1| KH domain containing protein [Brugia malayi] Length = 634 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE E+ VP + IG+ GQNVR +LTG + I + D N++ Sbjct: 525 MDEVRLCTEIAVPSRLVGRIIGKGGQNVRELQRLTGAQVKIPDDAGDDENQKATIVRVLG 584 Query: 361 FFM 363 F Sbjct: 585 NFQ 587 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 24/169 (14%) Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII- 342 A +V N + A + + V + + VP + IG +G ++R A +LTG + I Sbjct: 355 AQYVRNTVGTA--VAITGQQQVRTVHMWVPNNMVGALIGAKGAHIRSAIRLTGAQLRIEG 412 Query: 343 --TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE- 399 T ++ +R + NE++ + V E++ LV E + + +E S E Sbjct: 413 GGTNKDKKESRGEGNNEKSD---KDNAVTELVKKELVEAD----ERVNELDKNENNSDEK 465 Query: 400 --GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 G EE ++ + K +++ E L +I G D + Sbjct: 466 QNGKKEENVEKV---------ASPKLSKDKDKDVHAEERLVTITGNDPQ 505 >gi|260462840|ref|ZP_05811045.1| ribosomal protein S1 [Mesorhizobium opportunistum WSM2075] gi|259031484|gb|EEW32755.1| ribosomal protein S1 [Mesorhizobium opportunistum WSM2075] Length = 565 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKAARSLYGTMSD---IR-------------VEINPETGDISLFRLLEV 68 +V + + +++ +A S + +R V N G ++ V Sbjct: 75 EVYVERIENALGEAMLSREKARREESWVRLEEKFTKGERVEGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVSPLMHNPQP--FEILKMDRRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|18313927|ref|NP_560594.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] gi|18161497|gb|AAL64776.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] Length = 311 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 E+L SI G+ K L E G+ ++E LA +V++L+ ++ L +G Sbjct: 6 EDLQSIEGVGPKTLEKLRELGVTSVEHLAEFTVEELVEAGIEYDRAVKLLQQALQRVGAA 65 Query: 495 K 495 + Sbjct: 66 R 66 >gi|329770414|ref|ZP_08261796.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325] gi|328836537|gb|EGF86197.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325] Length = 402 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 10/108 (9%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEY 151 +G + + +D + + ++VI + E + + + + G++I G V R+ Sbjct: 164 VGNEYTFKIEEVDKAKNKIILNRRVI---LEEEKAKKLAEVYGNINEGDVIEGKVSRITN 220 Query: 152 GNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIYDVRREQ 193 V++G DG++ E + L GD VK + V +E Sbjct: 221 FGAFVNIGEVDGLLHISEISHSRLEKVEDALSVGDTVKVAVIAVDKEN 268 >gi|238926860|ref|ZP_04658620.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531] gi|238885392|gb|EEQ49030.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531] Length = 370 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L +D S+ + V + +D + + +++ ++++ R + + + Sbjct: 129 PASQMELHFVKDL--SVYVDQTVEAEIIEIDVQKRRLVLSRRKLLERDRAEKEEAVFSAI 186 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + +I+ GTVKR+ +D+G DG+ + E L G + Y+ Sbjct: 187 EP--EQIVRGTVKRLVDYGAFIDIGGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKS 244 Query: 189 VRREQRGPQVLL 200 V R+ + + + Sbjct: 245 VDRDTKRISLSV 256 >gi|260944444|ref|XP_002616520.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238850169|gb|EEQ39633.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 339 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++E+ + + ++ + L EG+ VE LA + +++G Sbjct: 1 MSEQHIEDDDEGFAGPLLIERLEGNGISAGDIKKLKMEGYHTVESLAYAPKKALLTVKGI 60 Query: 402 DEETAVEIQGRARE 415 E A I A + Sbjct: 61 SEAKADRISQEASK 74 >gi|87302523|ref|ZP_01085340.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH 5701] gi|87282867|gb|EAQ74824.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH 5701] Length = 403 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQRGP 196 G+++ V G V DL G I R + + EN G +V + R Sbjct: 218 GKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQNGENHEQLVGTSFAVAFLEVNADTR-- 275 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +++LS L +EV ++ +G V Sbjct: 276 KLVLSEKRAASASLLAELEVGQLVDGQV 303 >gi|108804846|ref|YP_644783.1| 30S ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941] gi|108766089|gb|ABG04971.1| SSU ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941] Length = 411 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 11/82 (13%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPG 179 + ++F+D G+I+ G V R++ V+VD+G S+G+I +E ++ + G Sbjct: 29 DESVLIDFQD--GDIVEGEVVRIDKDEVLVDIGYKSEGLIPANELTIRKGADPKDVVELG 86 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 R+++ + ++E +++LS Sbjct: 87 QRIEALVL--QKEDADGRLILS 106 >gi|20067699|emb|CAD29091.1| chimeric DNA-directed DNA polymerase bf4-18 [synthetic construct] Length = 338 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|332187529|ref|ZP_08389266.1| ribosomal protein S1 [Sphingomonas sp. S17] gi|332012458|gb|EGI54526.1| ribosomal protein S1 [Sphingomonas sp. S17] Length = 569 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +DI + MD R + +++ ++++ R +R Sbjct: 139 PGSQVDIRPVRDVTPLMDIPQP--FQILKMDRKRGNIVVSRRAVLEETRAEQRSGLIQSL 196 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G+II G VK + VDLG DG++ + E + GD V+ I Sbjct: 197 A--EGQIIDGVVKNITDYGAFVDLGGIDGLLHVTDLSYKRVNHPSEMIAIGDTVRVQIIR 254 Query: 189 VRREQ 193 + ++ Sbjct: 255 INKDT 259 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISREN--LRPGDRVKSYIYDVRREQ 193 G ++ GTV +E ++D+G S+G + E + L+ GD V+ Y+ V Sbjct: 27 EGRVVHGTVTAIENDMAVIDVGLKSEGRVPLREFAAPGQKADLKVGDEVEVYVDRVENMH 86 Query: 194 RGPQVLLSR 202 +LSR Sbjct: 87 GEA--MLSR 93 >gi|325680686|ref|ZP_08160224.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcus albus 8] gi|324107466|gb|EGC01744.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcus albus 8] Length = 628 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR---EAERDRQYLEFKDKV--GEIISG 144 D+ ++ + V AKQ + VR E+ +F + G + G Sbjct: 412 DYDLNELLKQTVKFKILE---VNDAKQRAVGSVRAVAREEKAAAQSKFFETAVPGTEMEG 468 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 VK + V VDLG DG++RR + + + GD+V I D+ E + + Sbjct: 469 VVKSITDYGVFVDLGGVDGLVRRADLSWNRIKHPSDVVSIGDKVTVTIKDIDPETKKVSL 528 Query: 199 L 199 Sbjct: 529 T 529 >gi|255535011|ref|YP_003095382.1| 30S ribosomal protein S1 [Flavobacteriaceae bacterium 3519-10] gi|255341207|gb|ACU07320.1| SSU ribosomal protein S1p [Flavobacteriaceae bacterium 3519-10] Length = 597 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K +D D + +F V V K +I + +R+ Sbjct: 159 EAFLPGSQIDVKPIKDYDQFVGKTMEFKVVKINPEFKNVVVSH-KALIEADLEGQKREII 217 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ GTVK + V VDLG DG+I + E L G+ VK Sbjct: 218 -GQLE--KGQVLEGTVKNITSYGVFVDLGGVDGLIHITDLSWSRVNHPSEILSDGETVKV 274 Query: 185 YIYDVRREQRGPQV 198 I D E+ Q+ Sbjct: 275 VILDFDDEKTRIQL 288 >gi|257125163|ref|YP_003163277.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b] gi|257049102|gb|ACV38286.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b] Length = 600 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 19/151 (12%) Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQV 117 D +F LE EV + + S + +G V + +D + S KQ+ Sbjct: 439 DYGIFVELEKGIEVFIHRNEFSWD--KREHKKYKVGDEVEFKVIIVDKLDKKLSGSIKQL 496 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS---- 172 +EA K G +I+ + ++ V+V L +G++ + E Sbjct: 497 EKSPWKEATEQ-------CKKGNVINTEIVEIQENFVLVKLTDRFNGIVPKRELSEEFLK 549 Query: 173 --RENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E GD+V++ I D+ +++ + LS Sbjct: 550 DISEKFSIGDKVQAVITDINEKRK--SIALS 578 Score = 37.4 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 16/116 (13%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 +IG + + D + V ++ ++ F V +I++G + R Sbjct: 55 DFEIGDKIEVKVLREDDDNIIVSKFM---------LDKAKELASFN--VDDIVTGEISRK 103 Query: 150 EYGNVIVDLGNSDGVIRRD-ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 G V +G ++ + ++ G + K I RE+ + +SR+ Sbjct: 104 IKGGYTVKIGKNEAFLPFSLARFEKDKDYTGQKFKFLI----REKNKSNITISRSD 155 >gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56'] gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56'] Length = 676 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 16/94 (17%) Query: 337 WTIDIITEEEDSINRQKDFNERTQ-----------FFMQAINVDE---IIAHLLVAEGFA 382 + + + + + +K + + F+ A+ ++ A LLV+ G+ Sbjct: 482 YKLTVKSIADLDRRGEKSATKCLEQLKSRLPLALPVFLAALGIEGFAIQTARLLVSAGYT 541 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQG--RAR 414 +E+L E+A I G A I RAR Sbjct: 542 TIEKLLAAGEDELAGIPGLGAIKAASIVRGLRAR 575 >gi|296269520|ref|YP_003652152.1| serine/threonine protein kinase [Thermobispora bispora DSM 43833] gi|296092307|gb|ADG88259.1| serine/threonine protein kinase [Thermobispora bispora DSM 43833] Length = 1387 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 7/161 (4%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A + L V +L E++ + G + T EI+ RA+++ + Sbjct: 806 IAAAGLTPRAVDALHRIDVRTVRDLLARSPFELSRLSGVADPTKREIRRRAKQWRARLQP 865 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + I +++L G+D + +L G+K D A V E Sbjct: 866 ATPEPIGTGEPADDLG--RGVD-AVLRSLLPKGVK--PDTAEAQVLRCYLGLEETESAWP 920 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 + G +V ++ AR + W + + +A+ + Sbjct: 921 TNAELGEAAGVTAGRVSQILPKARKR--WRQSKALAEVRDE 959 >gi|325679748|ref|ZP_08159322.1| excinuclease ABC, C subunit [Ruminococcus albus 8] gi|324108563|gb|EGC02805.1| excinuclease ABC, C subunit [Ruminococcus albus 8] Length = 614 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V D+ + ++SL R N L +Q+ ++ ++ + + Sbjct: 503 VKDDHHRTRAIATGDGEISLLKSRAAFN--LVTQIQD---EVHRVAITYQKAKRKRSTFS 557 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + V E A L+ F E L + E+ ++ G E+TA E++ Sbjct: 558 LELTKVRGVGEKKAQKLITA-FKTKEALKKASVEELRAVAGISEDTAKELKN 608 >gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM] gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796] gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM] gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796] Length = 403 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER+ + + + VG+++ G V R+ +D+G DG++ E Sbjct: 176 HKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKLA--VFSSDSSIDP 250 E+ +GI + VS P K+ V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342 >gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB27] gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus] gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27] Length = 713 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 22/114 (19%) Query: 92 DIGGVVSDP----LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 ++G V + A AK+ I REA KVGEI GTV Sbjct: 593 ELGVEVDIEEDGTVRIYSSDLNAALEAKKRIEDLTREA-----------KVGEIYEGTVT 641 Query: 148 RVEY-GNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIYDVRREQR 194 R+ G I ++G++ + ++L+ GD +K ++ + + Sbjct: 642 RITPFGAFISLFPGTEGLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGK 695 >gi|188997064|ref|YP_001931315.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932131|gb|ACD66761.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 565 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 132 LEF--KDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRV 182 EF K KVG+++ G VK++ IVDLG N +G I E I + L V Sbjct: 427 NEFISKYKVGDVVKGKVKKLIEKGAIVDLGENIEGFIPVSEIALERINIPSDKLELHQEV 486 Query: 183 KSYIYDVRREQRGPQVLLS 201 ++ I + E + ++ LS Sbjct: 487 EAKIIKIDPENK--KITLS 503 >gi|74215638|dbj|BAE21429.1| unnamed protein product [Mus musculus] Length = 1250 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 255 VGMRGSRVQAVVTELRD---------EKIDIV-----VW-SPDSATFVINALRPAIVTKV 299 +G +G RV+ + + D EK DIV + S A ++ N L Sbjct: 510 IGQKGERVREICKKFPDVILNFPHPAEKSDIVQLIGPRYESEKCAQYLENMLT------- 562 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDF 355 + E+ I V + K+ IG+ N+R S+ T I E EE I + Sbjct: 563 DIKENNYSISVPIIKKLHKRIIGKGVSNIRKISEATNTKITFPPESCNSEEFIITGYPEN 622 Query: 356 NERTQFFMQAINVDEIIAHLLVAE 379 E + ++ +++ + +A E Sbjct: 623 CEIARNWI--LSLQQELADTAEEE 644 >gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8] gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8] Length = 688 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + A +L AE F +E +A + I G E A I R + +K Sbjct: 522 VGQKTAKIL-AEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN---PKTREIIEK 577 Query: 428 IRELGV--SEELCSIP---GIDSKIKVAL 451 +++ GV E++ + G+ + L Sbjct: 578 LKKAGVKLEEKVVKLDILRGLTFAVTGTL 606 >gi|46108550|ref|XP_381333.1| hypothetical protein FG01157.1 [Gibberella zeae PH-1] Length = 348 Score = 39.7 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L+V G+ VE +A + I+G E+ A +I A + Sbjct: 39 IQLVVDGGYNTVESVAYTPRRVLEQIKGISEQKATKILAEASK 81 >gi|324504210|gb|ADY41818.1| Apoptosis-linked gene 2-interacting protein X 1 [Ascaris suum] Length = 889 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 3/154 (1%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +T ++ + ++ + A N D+I+ + E ++ L+ + A+I G Sbjct: 483 MTSDKLTAPLHQEVGKYRGILQAATNADQIVKQKM-DENREAIKLLSLPEPELRAAIPGL 541 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIP-GIDSKIKVALGENGIKTME 460 D A ++ +D + KI + E + + + A+ ++ I E Sbjct: 542 DPANANRNSEAVKKLRSLMDTVQEIKIEREQLEREFADVHCDMTTVFLKAMADSQILNEE 601 Query: 461 DLAGCSVDDLLG-WSENKGGNIEKFDGFLSSLGT 493 L+ ++++ G + I+K + L+ + Sbjct: 602 QLSTAKINEIYGPLKDKVSETIKKQESCLAEVEM 635 >gi|229814996|ref|ZP_04445334.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM 13280] gi|229809483|gb|EEP45247.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM 13280] Length = 386 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP------GDRVKSYIYDVR 190 G++++GTV ++E V+VD+G S+GVI E R++ P GD +++ + + Sbjct: 33 EGDLVNGTVVKIERDEVLVDIGFKSEGVIPVRELSIRKDANPADLVALGDSIEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKDGRLVLS 101 >gi|269784766|ref|NP_001028413.2| hypothetical protein LOC211208 [Mus musculus] gi|123230276|emb|CAM26825.1| novel gene coding for a KH domain containing protein [Mus musculus] gi|148688495|gb|EDL20442.1| mCG56945 [Mus musculus] Length = 1250 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 255 VGMRGSRVQAVVTELRD---------EKIDIV-----VW-SPDSATFVINALRPAIVTKV 299 +G +G RV+ + + D EK DIV + S A ++ N L Sbjct: 510 IGQKGERVREICKKFPDVILNFPHPAEKSDIVQLIGPRYESEKCAQYLENMLT------- 562 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDF 355 + E+ I V + K+ IG+ N+R S+ T I E EE I + Sbjct: 563 DIKENNYSISVPIIKKLHKRIIGKGVSNIRKISEATNTKITFPPESCNSEEFIITGYPEN 622 Query: 356 NERTQFFMQAINVDEIIAHLLVAE 379 E + ++ +++ + +A E Sbjct: 623 CEIARNWI--LSLQQELADTAEEE 644 >gi|13474344|ref|NP_105912.1| 30S ribosomal protein S1 [Mesorhizobium loti MAFF303099] gi|14025097|dbj|BAB51698.1| ribosomal protein S1 [Mesorhizobium loti MAFF303099] Length = 565 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKAARSLYGTMSD---IR-------------VEINPETGDISLFRLLEV 68 +V + + +++ +A S + +R V N G ++ V Sbjct: 75 EVYVERIENALGEAMLSREKARREESWVRLEEKFTKGERVEGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVSPLMHNPQP--FEILKMDRRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|327287112|ref|XP_003228273.1| PREDICTED: DNA polymerase beta-like [Anolis carolinensis] Length = 335 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLDGVGAKIAEKI----DEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPAAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|325283658|ref|YP_004256199.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus MRP] gi|324315467|gb|ADY26582.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP] Length = 610 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 27/120 (22%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRR----DETISREN----LRPGDRVKSYIYDV 189 G+I+ GTV + + VD+G +G++ DE ++ E +PGD + +Y+ V Sbjct: 71 GDIVDGTVVFIGSEGIAVDIGAKVEGIVPLTQLGDEPMTAEEAQAQYKPGDSITTYVVRV 130 Query: 190 RREQRGPQVLLS--RTHPQFMVKL----------FHMEVPEIYNGIVQVKAVSRDPGSRA 237 Q++LS R ++ F +EV E G + V++ G RA Sbjct: 131 DTNTG--QIVLSKKRADQNKGWRVLEKMQEEGQTFEVEVLEKVRGGL----VAQVEGIRA 184 >gi|320334056|ref|YP_004170767.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755345|gb|ADV67102.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211] Length = 557 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRD---------ETISRENLRPGDRVKSYIYD 188 G++++GT+ + ++VD+G +G+I + E E +PGD++++Y+ Sbjct: 49 GDVLTGTIVFIGNEGLMVDVGAKVEGLIPFNQLADEPLTQEQAQ-EQYKPGDQIEAYV-- 105 Query: 189 VRREQRGPQVLLS 201 VR + Q++LS Sbjct: 106 VRSDLANGQIVLS 118 >gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243] gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1] gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243] gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1] Length = 405 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 9/85 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G+++ GTV ++E+ V+VD+G S+GVI E + + G+++++ + + Sbjct: 33 EGDLVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVELGEKIEALVL--Q 90 Query: 191 REQRGPQVLLSRTHPQFMVKLFHME 215 +E + +++LS+ ++ +E Sbjct: 91 KEDKDGRLILSKKRAEYERAWIRVE 115 >gi|156845672|ref|XP_001645726.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM 70294] gi|156116393|gb|EDO17868.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM 70294] Length = 1725 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 E+ DK+ E++S V ++ ++L + + S E+L+ D VK+ I +V Sbjct: 1134 DEYDDKLNEMVSAKVISIDRETKKINLSLQNEKASNMKLKSHEDLKQKDVVKAIIKNV-- 1191 Query: 192 EQRGPQVLLS 201 ++G V LS Sbjct: 1192 TEKGIFVYLS 1201 >gi|115491377|ref|XP_001210316.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624] gi|114197176|gb|EAU38876.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624] Length = 348 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAR 414 L V G+ VE +A ++ I+G E+ A + + A+ Sbjct: 39 IKLFVEAGYYTVESVAYTPKRQLEQIKGISEQKATKVLVEAAK 81 >gi|148652399|ref|YP_001279492.1| hypothetical protein PsycPRwf_0587 [Psychrobacter sp. PRwf-1] gi|148571483|gb|ABQ93542.1| hypothetical protein PsycPRwf_0587 [Psychrobacter sp. PRwf-1] Length = 108 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 8/97 (8%) Query: 45 TMSDIRVEINPETGDISL---FRLLEVVEEVENYTCQISLKV-ARDRDP--SIDIGGVVS 98 ++ VEI+ ETG S F ++E VEN QI L+ A DP +I V Sbjct: 6 EKDNLEVEIDAETGKRSTRRGFAQETILELVENEKGQIVLRDSANAEDPLVTIAFSDKVK 65 Query: 99 DPLPPMD--FGRVAVQSAKQVIIQKVREAERDRQYLE 133 + L G + +A Q ++QK Y E Sbjct: 66 EMLEGEAQFIGHKMIHAAIQAVMQKQVSQWHANVYDE 102 >gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1] gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1] Length = 752 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 415 EYLEGIDITLQKKIRELGVSE--ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++E +++ ++ + + + G+ L E GI ++E LA +L Sbjct: 669 NFIEWQKTQKEEQAQQPKKEKPKSIKDLEGVGKATAGKLEEAGITSVEALAEADPVELA 727 >gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121] Length = 392 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 25/177 (14%) Query: 54 NPETGDISLFRLLEVVEEVEN-------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDF 106 + TG++ +VV + Q+S + + G + + ++F Sbjct: 17 DKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAYVTKIEF 76 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLGNSDGV 164 + I+ K R+ E ++ Y ++K+ E+I V V G ++VD+G G Sbjct: 77 DEE--NDSGAYILSK-RQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDVGQR-GF 132 Query: 165 IRRDETISRENLR-----PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEV 216 + IS + + G +K + ++ E +V+LSR + EV Sbjct: 133 VPAS-LISTDFIEDFSDFEGQTIKIKVEELDPENN--RVILSRKAVEQA----ENEV 182 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD +++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + +D V +++ + Q E ++ G++I GTV R+ Sbjct: 151 GQTIKIKVEELDPENNRVILSRKAVEQAENEVKKASLLDSLNA--GDVIEGTVARLTNFG 208 Query: 154 VIVDLGNSDGVIRRDE------TISRENLRPGDRVKSYIYDVRREQ 193 VD+G DG++ E E + GD+V + V ++ Sbjct: 209 AFVDIGGVDGLVHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDT 254 >gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum DSM 1728] gi|13878691|sp|Q9HJ68|RADA_THEAC RecName: Full=DNA repair and recombination protein radA gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum] Length = 323 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%) Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + N + V E A L G+ D+ +A +++ + G E A +I Sbjct: 2 MESNEENREKKTIEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKI 61 Query: 410 QGRAREYLEGIDITLQKKIRE 430 AR++ + + ++I E Sbjct: 62 IAAARKFADIGNFETGEEILE 82 >gi|301753319|ref|XP_002912509.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Ailuropoda melanoleuca] Length = 1105 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A +I A+ L Sbjct: 1017 LMEVTGVLEGRARQLYNAGYKSLMHLANANPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 1076 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 1077 AEALQEEVEEL 1087 >gi|224069256|ref|XP_002326313.1| predicted protein [Populus trichocarpa] gi|222833506|gb|EEE71983.1| predicted protein [Populus trichocarpa] Length = 348 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +QA + + L G VE +A E+ I+G E +I Sbjct: 31 LQASGIASLDVKKLKDAGLCTVESVAFSPRKELLQIKGISEAKVDKIIEA 80 >gi|224476595|ref|YP_002634201.1| 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421202|emb|CAL28016.1| putative 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus TM300] Length = 392 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ISG V++VE VIVD+ G G++ + E ++ GD V++Y+ Sbjct: 14 KEGDKISGQVQKVEDKQVIVDVDGGKFSGIVPISQLSTHHIDSPNEVVKEGDAVEAYVTK 73 Query: 189 VRREQ 193 V ++ Sbjct: 74 VEVDE 78 >gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis ATCC 12228] gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis RP62A] gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis RP62A] gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU028] gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU045] Length = 701 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 +I L G + + + Q +I + +E D +VG++ VKR+E Sbjct: 582 EIIDETGVKLDIEQDGTIFIGAVDQAMINRAKEIIEDITRE---AEVGQVYHAKVKRIEK 638 Query: 152 GNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 V+L + IS+E L+ GD ++ I ++ ++ R Sbjct: 639 YGAFVELFPGKDALLHISQISQERINKVEDVLKIGDTIEVKITEIDKQGR 688 >gi|91069936|gb|ABE10864.1| hypothetical protein ASNC2259_0017 [uncultured Prochlorococcus marinus clone ASNC2259] Length = 236 Score = 39.7 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 338 TIDIITEEEDSINRQKDFNER------TQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 + I +E I ++ +R + V + A +L G+ E++ Sbjct: 157 ELSIKSEAYKDIYKKLVLEKRFPDSFFRDILCELNGVSKNTASILWESGYLTKEQILNAP 216 Query: 392 ISEIASIEGFDEETAVEIQG 411 SE+ I+G + +I+ Sbjct: 217 CSELIEIKGLGKNMISKIKN 236 >gi|311270149|ref|XP_001925270.2| PREDICTED: LOW QUALITY PROTEIN: SAM domain-containing protein SAMSN-1 [Sus scrofa] Length = 374 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 9/97 (9%) Query: 339 IDIITEEEDSINRQKDFNERT--------QFFMQAINVDEIIAHLLVAEGFADVEELACV 390 +D+I+EEE++ ++ ++R+ Q F++ I++ E + LL+ G+ +E+L + Sbjct: 219 VDVISEEEEAAPKKIKAHKRSGKXKPQTLQEFLERIHLQEYTSTLLL-NGYESLEDLKDI 277 Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 K S + + + E + + A L+ + Q+ Sbjct: 278 KESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQEN 314 >gi|301064798|ref|ZP_07205172.1| putative ribosomal protein S1 [delta proteobacterium NaphS2] gi|300441092|gb|EFK05483.1| putative ribosomal protein S1 [delta proteobacterium NaphS2] Length = 493 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 19/123 (15%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE---RDRQYLEFKDKVGEII 142 + + G ++ + +D R Q I +R+ E ++ G+ + Sbjct: 339 KAEDVVSPGDLIQVLIKEIDSSR-------QRISLSMRDVEGDPWAGIAGKYG--KGQPV 389 Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETI-----SR--ENLRPGDRVKSYIYDVRREQRG 195 GTV++ E + V L + I E RPGD + I +V E+R Sbjct: 390 EGTVEKHENFGIFVSLEPGVSALLPKSRIRESSSPGRIEKARPGDTIPVVIENVNVEERK 449 Query: 196 PQV 198 V Sbjct: 450 ISV 452 >gi|253581079|ref|ZP_04858339.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847615|gb|EES75585.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 302 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 9/73 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+I++GTV V+ V+VDL ++G+I ++ +E + GD V + + VR Sbjct: 21 EGDILTGTVISVDEKEVVVDLKYYAEGIIPAEDYSREPGFSLKEQVNVGDEVSATV--VR 78 Query: 191 REQRGPQVLLSRT 203 ++ +LLSRT Sbjct: 79 KDDGNGNILLSRT 91 >gi|118578638|ref|YP_899888.1| hypothetical protein Ppro_0194 [Pelobacter propionicus DSM 2379] gi|118501348|gb|ABK97830.1| hypothetical protein Ppro_0194 [Pelobacter propionicus DSM 2379] Length = 236 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 59/252 (23%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80 + D ++ + ++ + + + +R E G++ + Sbjct: 11 GLPEDEIVDAVECAVARTLMAAFKRTVTVRAE-----GELEIIAY--------------- 50 Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII--QKVREAERDRQYLEFKDKV 138 P + + P R + S + + Q + EA+ + ++ Sbjct: 51 --------PKLGHPVEMQLKDIPKKLRRHIIHSVEAELQTRQILLEAK------KLQELQ 96 Query: 139 GEIISGTVKRV-EYGNVIVDLGNSD--------GVIRRDETISRE--NLRPGDRVKSYIY 187 G + G+V R+ G + V L D G E R G++ + Sbjct: 97 GRVFCGSVGRIGSRGTLHVTLEIDDLLKPLILFGECPLRYQPPHERSRYRIGEQRSFLVT 156 Query: 188 DVRREQRG-----PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA-- 240 VR G +++L+RT L GI +K R G +++ Sbjct: 157 SVRPVMVGGDIAKVRLILNRTSRALPALLLQD-----LTGITGIKCRRRIAGGFSEVVTP 211 Query: 241 VFSSDSSIDPVG 252 V +SI+ VG Sbjct: 212 VRIPKTSINTVG 223 >gi|291519327|emb|CBK74548.1| Ribosomal protein S1 [Butyrivibrio fibrisolvens 16/4] Length = 374 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + + ++D G +S + D R + ++ ++ A+R Sbjct: 125 VVDEARVFIPASFVSDVYEKDLGKYQGQEISFVITEFDPKRRRIIGNRKTLLV----ADR 180 Query: 128 DRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPG 179 + E K VG+ GTVK V+ +DLG +DG++ E + L G Sbjct: 181 AKAQEELMSKIAVGQEFEGTVKNVKDFGAFIDLGGADGLLHISEMSWGRVENPTKTLNVG 240 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D +K ++ +++ ++ LS Sbjct: 241 DTIKVFVKEIKDG----KIALS 258 >gi|284164857|ref|YP_003403136.1| hypothetical protein Htur_1577 [Haloterrigena turkmenica DSM 5511] gi|284014512|gb|ADB60463.1| hypothetical protein Htur_1577 [Haloterrigena turkmenica DSM 5511] Length = 335 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 14/127 (11%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 TE++ ++ Q +V + + E +A SI Sbjct: 188 TEQQTVEGVRRAEEAAETVQQQTEDVADTVQQ--------STEAVAQTAQESTESIAETS 239 Query: 403 EETAVEIQGRAREYLE------GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456 + A ++ G A E E I + + + L S+ G+ L E GI Sbjct: 240 QRNAQDLVGEAAEATEDLAVETTDAIETATERGDNAEEQNLQSLEGVGQTYTDRLAEAGI 299 Query: 457 KTMEDLA 463 +T+ DLA Sbjct: 300 ETIADLA 306 >gi|269216208|ref|ZP_06160062.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122] gi|269130467|gb|EEZ61545.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122] Length = 399 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 9/85 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 G+++ GTV ++E+ V++D+G S+GVI E E + GD +++ + + Sbjct: 33 EGDLVKGTVVQIEHDEVLLDIGFKSEGVIPSRELSIRKDADPSEIVALGDEIEALVL--Q 90 Query: 191 REQRGPQVLLSRTHPQFMVKLFHME 215 +E + +++LS+ ++ +E Sbjct: 91 KEDKEGRLILSKKRAEYERAWISVE 115 >gi|213403772|ref|XP_002172658.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275] gi|212000705|gb|EEB06365.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275] Length = 370 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%) Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 G+ VE +A ++ +I+G E A ++ A + Sbjct: 69 EAGYYTVESIAYTPKRQLLNIKGISEAKADKLLSEASK 106 >gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645] gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645] Length = 636 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 127 RDRQYLEFKDKV----GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISREN--LRPG 179 + EF+ + +I+ GT+ RV+ V++D+ G S+G I RDE + + G Sbjct: 28 EANVFDEFEHEESVELNKIVDGTILRVDDEFVLIDVGGKSEGSIPRDEWDEEDEDPPKIG 87 Query: 180 DRVKSYIYDVRRE 192 D++K + D+ E Sbjct: 88 DKIKVLVEDIEDE 100 >gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU144] Length = 701 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 +I L G + + + Q +I + +E D +VG++ VKR+E Sbjct: 582 EIIDETGVKLDIEQDGTIFIGAVDQAMINRAKEIIEDITRE---AEVGQVYHAKVKRIEK 638 Query: 152 GNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 V+L + IS+E L+ GD ++ I ++ ++ R Sbjct: 639 YGAFVELFPGKDALLHISQISQERINKVEDVLKIGDTIEVKITEIDKQGR 688 >gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359] gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359] Length = 693 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + A +L AE F +E +A + I G E A I R + +K Sbjct: 527 VGQKTAKIL-AEHFKSLEAIAEASYETLKDIPGIGPEIARSIVEYFRN---PKTREIIEK 582 Query: 428 IRELGV 433 +++ GV Sbjct: 583 LKKAGV 588 >gi|189210816|ref|XP_001941739.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|330918612|ref|XP_003298289.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1] gi|187977832|gb|EDU44458.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|311328605|gb|EFQ93618.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1] Length = 348 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAI-NVDEIIA---HLLVAEGFADVEELACVKISEIAS 397 ++ EE+ + A+ V+ + A L++ G+ VE +A + Sbjct: 1 MSNEEEQYEDSTMGGPGAPTPVSALEGVNGLTARDIKLVIEGGYNTVESIAYTPRRALEQ 60 Query: 398 IEGFDEETAVEIQGRARE 415 I+G E+ A ++ A + Sbjct: 61 IKGISEQKASKLLAEASK 78 >gi|29349753|ref|NP_813256.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482] gi|29341663|gb|AAO79450.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482] Length = 599 Score = 39.3 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAER--DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V + E+ D + D+ E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENGEAVTSASHEDLEKAYDGTLNKVNDR--EVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341] gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341] Length = 419 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 10/108 (9%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEY 151 +G + + +D + + ++VI + E + + + + G++I G V R+ Sbjct: 181 VGNEYTFKIEEVDKSKNKIILNRRVI---LEEEKAKKLAEVYGNINEGDVIEGKVSRITD 237 Query: 152 GNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQ 193 V++G DG++ E + + GD VK + V +E Sbjct: 238 FGAFVNIGEVDGLLHISEISHARVEKVSDVISVGDTVKVAVIAVDKEN 285 >gi|313896281|ref|ZP_07829834.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975080|gb|EFR40542.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 137 str. F0430] Length = 389 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L +D S+ + V + +D + + +++ ++++ R + + + Sbjct: 134 PASQMELHFVKDL--SVYVDQTVEAEIIEVDVQKRRLVLSRRKLLERDRAEKEEAVFSAI 191 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + +I+ GTVKR+ +D+G DG+ + E L G + Y+ Sbjct: 192 EP--EQIVRGTVKRLVDYGAFIDIGGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKS 249 Query: 189 VRREQRGPQVLL 200 V R+ + + + Sbjct: 250 VDRDAKRISLSV 261 >gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis FRI909] Length = 701 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 +I L G + + + Q +I + +E D +VG++ VKR+E Sbjct: 582 EIIDETGVKLDIEQDGTIFIGAVDQAMINRAKEIIEDITRE---AEVGQVYHAKVKRIEK 638 Query: 152 GNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 V+L + IS+E L+ GD ++ I ++ ++ R Sbjct: 639 YGAFVELFPGKDALLHISQISQERINKVEDVLKIGDTIEVKITEIDKQGR 688 >gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8] gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8] Length = 575 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 384 VEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIP 441 +EE+A + + G + A +I E+L + +++ E+ +P Sbjct: 44 IEEIAEKGKEALMELPGVGPDLAEKIL----EFLRTGKVRKHEELSRKVPRGVLEVMEVP 99 Query: 442 GIDSKIKVALGEN-GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKD 496 G+ K L E GI ++E L + D + KG ++ + L + Sbjct: 100 GVGPKTARLLYEGLGIDSLEKL--KAALDRGDLTRLKGFGPKRAERIREGLALAQA 153 >gi|302389719|ref|YP_003825540.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter oceani DSM 16646] gi|302200347|gb|ADL07917.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter oceani DSM 16646] Length = 672 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 11/96 (11%) Query: 115 KQVIIQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET- 170 + I +++ + + Y + + G+I+ GTV +V V+V++G SDG+I +E Sbjct: 272 MEEISREMENQQGEVAYEDGISELAEGKIVEGTVVKVSDKEVLVNVGHKSDGIIPLNELS 331 Query: 171 -----ISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 E ++ GDR+K I + + ++LS Sbjct: 332 NLPFSSPSEIVKTGDRIKVQILKLEDNEGN--LILS 365 >gi|281346799|gb|EFB22383.1| hypothetical protein PANDA_000253 [Ailuropoda melanoleuca] Length = 1004 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + +I+ A +I A+ L Sbjct: 916 LMEVTGVLEGRARQLYNAGYKSLMHLANANPEVLIRTIDHLSRRQAKQIVSSAKMLLHEK 975 Query: 421 DITLQKKIREL 431 LQ+++ EL Sbjct: 976 AEALQEEVEEL 986 >gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603] gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603] Length = 392 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD +++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 25/177 (14%) Query: 54 NPETGDISLFRLLEVVEEVEN-------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDF 106 + TG++ +VV + Q+S + + G + + ++F Sbjct: 17 DKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAYVTKIEF 76 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLGNSDGV 164 + I+ K R+ E ++ Y ++K+ E+I V V G ++VD+G G Sbjct: 77 DEE--NDSGAYILSK-RQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDVGQR-GF 132 Query: 165 IRRDETISRENLR-----PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEV 216 + IS + + G +K + ++ E +V+LSR + EV Sbjct: 133 VPAS-LISTDFIEDFSDFEGQTIKIKVEELDPENN--RVILSRKAVEQA----ENEV 182 >gi|257052349|ref|YP_003130182.1| DNA repair and recombination protein RadA [Halorhabdus utahensis DSM 12940] gi|256691112|gb|ACV11449.1| DNA repair and recombination protein RadA [Halorhabdus utahensis DSM 12940] Length = 348 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ V A L G+ + +A E+++ E +A +I ARE + Sbjct: 4 TEDLEDLPGVGPATAEKLTENGYDSYQGIAVASPGELSNTADVGESSAADIIQAAREAAD 63 >gi|242767957|ref|XP_002341472.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC 10500] gi|218724668|gb|EED24085.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC 10500] Length = 349 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L+V GF VE +A + I+G E+ A +I A + Sbjct: 40 IKLIVDGGFHTVESVAYTPKRVLEQIKGISEQKATKILAEASK 82 >gi|237715632|ref|ZP_04546113.1| 30S ribosomal protein S1 [Bacteroides sp. D1] gi|262408641|ref|ZP_06085187.1| ribosomal protein S1 [Bacteroides sp. 2_1_22] gi|294646672|ref|ZP_06724297.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CC 2a] gi|229444341|gb|EEO50132.1| 30S ribosomal protein S1 [Bacteroides sp. D1] gi|262353506|gb|EEZ02600.1| ribosomal protein S1 [Bacteroides sp. 2_1_22] gi|292637960|gb|EFF56353.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CC 2a] Length = 599 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V E ++ Y +KV E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENG--ETVTNVSHDELEKAYDGTLNKVNDREVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|210631374|ref|ZP_03296877.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279] gi|210160057|gb|EEA91028.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279] Length = 386 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP------GDRVKSYIYDVR 190 G++++GTV ++E V+VD+G S+GVI E R++ P GD +++ + + Sbjct: 33 EGDLVNGTVVKIERDEVLVDIGFKSEGVIPVRELSIRKDANPADLVALGDSIEALVL--Q 90 Query: 191 REQRGPQVLLS 201 +E + +++LS Sbjct: 91 KEDKDGRLVLS 101 >gi|212542819|ref|XP_002151564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC 18224] gi|111380646|gb|ABH09700.1| RAD51-like protein [Penicillium marneffei] gi|210066471|gb|EEA20564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC 18224] Length = 349 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L+V GF VE +A + I+G E+ A +I A + Sbjct: 40 IKLIVDGGFHTVESVAYTPKRVLEQIKGISEQKATKILAEASK 82 >gi|315499365|ref|YP_004088169.1| ribosomal protein s1 [Asticcacaulis excentricus CB 48] gi|315417377|gb|ADU14018.1| ribosomal protein S1 [Asticcacaulis excentricus CB 48] Length = 562 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +G + MD R + +++ I+++ R +R + Sbjct: 136 PGSQVDIRPVRDIAPL--MGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVGQL 193 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 GEI G VK + VDLG DG++ + + L GD V+ I Sbjct: 194 A--EGEIRDGVVKNITDYGAFVDLGGIDGLLHVTDMSWKRVSHPSQVLNVGDSVRVQIIK 251 Query: 189 VRREQ 193 + + Sbjct: 252 INPDT 256 >gi|158521992|ref|YP_001529862.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3] gi|158510818|gb|ABW67785.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3] Length = 604 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 24/190 (12%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIR-VEINPETGDISLFRLLEVVEEVEN 74 ++ +K+ ++D + + D + + V IN G S+ +V + Sbjct: 103 LSKDKA-EKDKIWETIKD--------TFDNDGVVSGVIINRVKGGFSV----DVGLQAFL 149 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q L+ R+ D +G + + R + +++V++++ +R Sbjct: 150 PGSQADLRPIRNFDE--MVGQTYDFKVLKYNRRRNNIVLSRRVLLEETLATKRAELMETL 207 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 D G+++ G VK + V VDLG DG++ + E GD V + Sbjct: 208 AD--GQVVEGIVKNITEYGVFVDLGGIDGLLHITDISWGRVRHPSELFTVGDNVTLKVLS 265 Query: 189 VRREQRGPQV 198 +++ + Sbjct: 266 FDLDKKKISL 275 >gi|149920266|ref|ZP_01908737.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1] gi|149818853|gb|EDM78293.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1] Length = 567 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ R+ D + + + R + +++V+++ R + + Sbjct: 143 PGSQVDLRPVRNLD--AFLNEEFDFKIIKFNKRRGNIVLSRRVLLEAERAELKHDTLNKL 200 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G+I+ G VK + +DLG DG++ + E + GD+VK + Sbjct: 201 A--EGQIVEGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRINHPSELFQVGDKVKVKVLK 258 Query: 189 VRREQ 193 E Sbjct: 259 FNSES 263 >gi|16605548|emb|CAC86604.1| Rad51B protein [Physcomitrella patens] gi|16605579|emb|CAC82997.1| Rad51B protein [Physcomitrella patens] Length = 342 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Query: 343 TEEEDSINRQKDFNERTQFFMQAI---NVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 TE + ++ + ++ + + + L G+ VE +A ++ +I+ Sbjct: 8 TEGATTSAATEEEIHHGPYLVEHLQSCGISALDLKKLKDAGYCTVEAVAYSAKKDLVNIK 67 Query: 400 GFDEETAVEIQGRA 413 G + +I A Sbjct: 68 GLSDAKVDKIIEAA 81 >gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio] Length = 1816 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 30/142 (21%) Query: 97 VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE-----------FKD---KVGEII 142 + +P +D + Q+ Q I++ + + ++ Y F KVG+I+ Sbjct: 391 LKEPKEELDTNHLMSQT--QHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIV 448 Query: 143 SGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRG 195 GTV ++ V V +G + G+I R + PG +VK + V +++ Sbjct: 449 EGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKK- 507 Query: 196 PQVLLSRTHPQFMVKLFHMEVP 217 ++L+R L +P Sbjct: 508 -LLILTRK-----KALVESTLP 523 >gi|91787671|ref|YP_548623.1| 30S ribosomal protein S1 [Polaromonas sp. JS666] gi|91696896|gb|ABE43725.1| SSU ribosomal protein S1P [Polaromonas sp. JS666] Length = 561 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGAIVTGKVKTVDAKGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVSAVVVNVD 509 Query: 191 REQRGPQVLL 200 R+ R Q+ + Sbjct: 510 RKTRNIQLSV 519 >gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] Length = 705 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 43/195 (22%) Query: 20 KSIDRDVVLSVMADS-------IQKAARSLYGTMSDI-----RVEINPETGDISLFRLLE 67 K + +++++ + + ++K ++ ++ R+EI + Sbjct: 510 KGLKKEIMIESLMQAKRGRLYILEKMYEAIPEPRKELSPYAPRIEI------------IT 557 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSD--PLPPMDFGRVAVQSAKQVIIQKVREA 125 V EE K +D V + + + A+ +AK++I +R+ Sbjct: 558 VPEEKAMLIIGPGGKTVKDIKEKTGTTVWVLEGGKVSLTAPSKSAIDAAKEIIENLIRDV 617 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE------NLRPG 179 E + Y G V RVE V V++ + + G Sbjct: 618 EVGKVYE-----------GKVTRVEPYGVFVEILPGKVGLLHVSKMEGYVKDVRAVFSVG 666 Query: 180 DRVKSYIYDVRREQR 194 D +K + +V + R Sbjct: 667 DTLKVKVLEVDEQGR 681 >gi|71904766|gb|AAZ52664.1| DNA-dependent RNA polymerase alpha chain [Mycoplasma hominis ATCC 23114] Length = 180 Score = 39.3 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D + + + + +N+ + L GF +V+E+ + E+++I+ +++ Sbjct: 90 DDQKEKHEKTPKVSVSIDKLNLTIRSLNALRRAGFNNVDEIMKLSDEELSNIKNLGKKSV 149 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEE 436 +I R RE+L+ + + +E +EE Sbjct: 150 QDIIDRRREWLDSQ-LNNEDSNKEYAANEE 178 >gi|82539154|ref|XP_723988.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23478474|gb|EAA15553.1| Rad51 homolog [Plasmodium yoelii yoelii] Length = 352 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 LL G VE +A + + SI+G E+ A +++ +E Sbjct: 51 ELLKEGGLQTVECVAYAPMRTLCSIKGISEQKAEKLKKACKE 92 >gi|255693432|ref|ZP_05417107.1| ribosomal protein S1 [Bacteroides finegoldii DSM 17565] gi|260620818|gb|EEX43689.1| ribosomal protein S1 [Bacteroides finegoldii DSM 17565] Length = 600 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V E ++ Y +KV E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENG--ETVTNVSHDELEKAYDGTLNKVNDREVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|94268201|ref|ZP_01291117.1| RNA binding S1 [delta proteobacterium MLMS-1] gi|93451696|gb|EAT02473.1| RNA binding S1 [delta proteobacterium MLMS-1] Length = 410 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 10/99 (10%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 Q+ L+ A +P +G S + + G+ + S +Q++ Q ER + Sbjct: 130 PYSQMDLRRA--ANPEEYLGQSFSFLIMEFREGGKNILLSRRQLLEQ-----ERQELKEQ 182 Query: 134 FKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + KVG++++GTV V VD+G +G+I E Sbjct: 183 LRQSLKVGDLVTGTVTSVRDFGAFVDIGGIEGLIPISEI 221 >gi|331701405|ref|YP_004398364.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128748|gb|AEB73301.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929] Length = 416 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 23/133 (17%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + P++ + A I+Q + ER++ G+++ GTV R+ VDL Sbjct: 165 IEIDPVENRLILSHKA---IVQAEKAEEREKLMQTL--HEGDVVEGTVARLTNFGAFVDL 219 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 G DG++ + + L+ G VK + V ++ ++ LS Sbjct: 220 GGMDGLVHVSQIAYERVDKPSDVLKVGQTVKVKVLSVDFDRN--RISLS----------I 267 Query: 213 HMEVPEIYNGIVQ 225 +PE ++GI + Sbjct: 268 KQTLPEPWDGIEE 280 >gi|115394440|gb|ABI97152.1| Rad51 [Pneumocystis murina] gi|115394442|gb|ABI97153.1| Rad51 [Pneumocystis murina] Length = 343 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAI---NVDEIIAHLLVAEGFADVEELACVKISEI 395 +D EE + + ++ + + + ++ G+ VE +A I Sbjct: 3 LDEELAEETAQDMNEEDIICGPTPLSKLEGNGISASDIKKIIEAGYNTVEAIAYTPKRAI 62 Query: 396 ASIEGFDEETAVEIQGRARE 415 I+G E A ++ A + Sbjct: 63 LLIKGISEAKADKLISEASK 82 >gi|5802566|gb|AAD51713.1|AF174136_1 RAD51 [Trypanosoma brucei] Length = 373 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 M+ V L+ GF VE +A I +++G E A +I Sbjct: 61 MENYGVASADIKKLMECGFLTVESVAYAPKKSILAVKGISEAKAEKIMA 109 >gi|298481477|ref|ZP_06999669.1| ribosomal protein S1 [Bacteroides sp. D22] gi|295086940|emb|CBK68463.1| SSU ribosomal protein S1P [Bacteroides xylanisolvens XB1A] gi|298272341|gb|EFI13910.1| ribosomal protein S1 [Bacteroides sp. D22] Length = 599 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 102 PPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG 159 P DF A ++ + V E ++ Y +KV E++ GTV + V+V++G Sbjct: 9 PIEDFNWDAYENG--ETVTNVSHDELEKAYDGTLNKVNDREVVDGTVIAMNKREVVVNIG 66 Query: 160 -NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 SDG+I +E +L+ GD V+ YI +E + Q++LS Sbjct: 67 YKSDGIIPLNEFRYNPDLKVGDTVEVYIE--NQEDKKGQLVLS 107 >gi|240279406|gb|EER42911.1| DNA repair protein RAD51 [Ajellomyces capsulatus H143] Length = 249 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Query: 342 ITEEEDSINRQKDFN----ERTQFFMQAINVDEIIA---HLLVAEGFADVEELACVKISE 394 +T E++S N ++ V+ + A L++ G+ +E +A Sbjct: 1 MTVEDESQNEYEENGLAGPGAPTPLTALEGVNGLTARDIKLVIDGGYHTIESVAYTPKRM 60 Query: 395 IASIEGFDEETAVEIQGRARE 415 + I+G E+ A +I A + Sbjct: 61 LEQIKGISEQKATKILAEASK 81 >gi|72119667|gb|AAZ61930.1| SSU ribosomal protein S1P [Ralstonia eutropha JMP134] Length = 592 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 22/137 (16%) Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + + Q + + A G V + +D K+ I +++ D + Sbjct: 428 DLSWQETGEEAVR---KYKKGDEVEAVVLGIDVD-------KERISLGIKQLSGDP-FNN 476 Query: 134 FK--DKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKS 184 F + G +++GT+K V+ +V L + +G +R E + R L+ G+++ + Sbjct: 477 FISANDKGSLVTGTIKAVDPKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITA 536 Query: 185 YIYDVRREQRGPQVLLS 201 + +V R+ R + LS Sbjct: 537 LVVNVDRKSRN--INLS 551 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 80 SLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 SL R D + G + + +D R V +++ +++ ER + K Sbjct: 167 SLVDVRPIKDTTPYEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLK--E 224 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRRE 192 G I++G VK + VDLG DG++ R E L G + + I +E Sbjct: 225 GAIVNGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQE 284 Query: 193 QR 194 + Sbjct: 285 KN 286 >gi|114566869|ref|YP_754023.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337804|gb|ABI68652.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 687 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 26/170 (15%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++SL+ +++G + + D + S K+V + + + + Sbjct: 364 PLREMSLQDIDSAKELVEVGDEIEVMVLKWDDDGTILLSKKKVDAKILLDELEESF---- 419 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE----TISRENLRPGDRVKSYIYDV- 189 K G++I+GTV G ++VD+G + + + + I + Sbjct: 420 --KEGKVITGTVTGSVKGGLLVDVG-IVAFLPASHVEDGYVKNLDEYINRELSFKIIEFN 476 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEV--------PEIYNGIVQVKAVSR 231 R ++RG QV+LSR +L E EI G V+ + R Sbjct: 477 RNKRRGSQVVLSR------KELVAEEKAKQKKQFWEEIEEGQVRKGRIKR 520 >gi|71755957|ref|XP_828893.1| RAD51 protein [Trypanosoma brucei TREU927] gi|70834279|gb|EAN79781.1| RAD51 protein [Trypanosoma brucei] Length = 373 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 M+ V L+ GF VE +A I +++G E A +I Sbjct: 61 MENYGVASADIKKLMECGFLTVESVAYAPKKSILAVKGISEAKAEKIMA 109 >gi|68071341|ref|XP_677584.1| Rad51 [Plasmodium berghei strain ANKA] gi|56497754|emb|CAH95058.1| Rad51 homolog, putative [Plasmodium berghei] Length = 349 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 LL G VE +A + + SI+G E+ A +++ +E Sbjct: 48 ELLKEGGLQTVECVAYAPMRTLCSIKGISEQKAEKLKKACKE 89 >gi|189500922|ref|YP_001960392.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides BS1] gi|189496363|gb|ACE04911.1| RNA binding S1 domain protein [Chlorobium phaeobacteroides BS1] Length = 591 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 EI+ GT+ + +V +D+G S+G++ + E E L+ GD V+ Y+ ++ + Sbjct: 49 EEEIVKGTIVAISNKDVTIDVGFKSEGIVSKLEFKDEEELQVGDEVEVYLENIEDKMG-- 106 Query: 197 QVLLS 201 Q++LS Sbjct: 107 QLILS 111 >gi|24213346|ref|NP_710827.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str. 56601] gi|45658772|ref|YP_002858.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194094|gb|AAN47845.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str. 56601] gi|45602016|gb|AAS71495.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 384 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSD-GVIRRDE-----TIS-RENLRPGDRVKSYIYDV 189 K G+I+ GT+ ++ V V L + G++ E + ++ +PG+ V ++ +V Sbjct: 273 KEGDIVKGTIDSLKPFGVFVKLDDHFNGLVPGRETGISNRVPLSQSFKPGEVVDVFVMEV 332 Query: 190 RREQRGPQVLLS 201 E++ Q+ LS Sbjct: 333 NPEKK--QISLS 342 >gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii KSM-K16] gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii KSM-K16] Length = 710 Score = 39.3 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 21/98 (21%) Query: 112 QSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI 171 Q AKQ+I VRE +VGE G VKR+E V+L + I Sbjct: 605 QKAKQIIEDLVREV-----------QVGETYHGKVKRIEKFGAFVELFKGKDGLLHISQI 653 Query: 172 SREN-------LRPGDRVKSYIYDVRREQRGPQVLLSR 202 + E + GD V + ++ + R V LSR Sbjct: 654 AEERINKVEDVFKLGDEVDVRVTEIDNQGR---VNLSR 688 >gi|332299900|ref|YP_004441821.1| RNA binding S1 domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332176963|gb|AEE12653.1| RNA binding S1 domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 598 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 123 REAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 ER+ Y + K E++ G V + V+V++G S G+I +E ++L+ G Sbjct: 30 MRKEREAIYDKTLTTIKENEVVMGKVMSISKREVLVNIGYKSAGIISANEFNYNKDLKVG 89 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D V+ + +E R Q+ LS Sbjct: 90 DEVEVLVES--KEDRFGQLQLS 109 >gi|301299466|ref|ZP_07205741.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852929|gb|EFK80538.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 397 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 17/133 (12%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + P D + ++ ++Q REA+R + G+++ G V R+ ++L Sbjct: 164 VEIEPSDNRLILS---RKELVQAEREAKRQAVMEKLVA--GDVVEGKVARLTNFGAFINL 218 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 G DG++ E + L+ G VK + V E+ + + +T P+ + Sbjct: 219 GGFDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQ-- 276 Query: 213 HMEVPE-IYNGIV 224 VPE + G V Sbjct: 277 ---VPEQVAEGDV 286 >gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 712 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 50/206 (24%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-EVVEEVENYTCQ 78 K + D++ +A + +TG + + EV+ E N+ + Sbjct: 516 KGLSEDILREALAQA---------------------KTGRAEMMAAMDEVISEPRNFVGE 554 Query: 79 ISLKVARDRDPSIDIGGVV---------------SDPLPPMDFGRVAVQSAKQVIIQKVR 123 + K+A+ I V+ + D GRV + Q I K + Sbjct: 555 YAPKIAQMNIKPDKIRDVIGAGGKIINQIIEDCNDVKIDIEDDGRVVIYHTDQASIDKAK 614 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENL 176 + VGEI V R+E V+L +D ++ + + + Sbjct: 615 AMIENIVR---VAAVGEIYDAKVVRIEKFGAFVNLFQGTDALLHVSKMDHNRVEKPEDIV 671 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSR 202 + GD VK + ++ + R V +SR Sbjct: 672 KLGDIVKVKVMEIDEKGR---VNVSR 694 >gi|221055874|ref|XP_002259075.1| recombinase rad51 [Plasmodium knowlesi strain H] gi|193809146|emb|CAQ39848.1| recombinase rad51, putative [Plasmodium knowlesi strain H] Length = 350 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 LL G VE +A + + +I+G E+ A +++ +E Sbjct: 49 ELLKEGGLQTVECVAYAPMRTLCAIKGISEQKAEKLKKACKE 90 >gi|154280987|ref|XP_001541306.1| DNA repair protein RAD51 [Ajellomyces capsulatus NAm1] gi|150411485|gb|EDN06873.1| DNA repair protein RAD51 [Ajellomyces capsulatus NAm1] Length = 297 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 342 ITEEEDSINRQKDFN----ERTQFFMQAINVDEIIA---HLLVAEGFADVEELACVKISE 394 +T E++S N ++ V+ + A L++ G+ +E +A Sbjct: 1 MTVEDESQNEYEENGLAGPGAPTPLTALEGVNGLTARDIKLVIDGGYHTIESVAYTPKRM 60 Query: 395 IASIEGFDEETAVEIQGRAREYLEGI 420 + I+G E+ A +I + L+ + Sbjct: 61 LEQIKGISEQKATKILAEGSKQLDTL 86 >gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus DSM 15952] gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus DSM 15952] Length = 707 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 29/188 (15%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRD 88 ++ +++ +A ++ + ++ I+ ++S + I + A+ +D Sbjct: 522 QILREALAQAKKARMEILEELTATIDQPRAELSQYAPK---------IEMIQIDPAKIKD 572 Query: 89 PSIDIGGVV-------SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 G + + G+V++ SA +I+K + D KVGE+ Sbjct: 573 VIGKGGDTINGIIEETGVKIDIDQDGKVSIASADAEMIKKAIKIIEDLTKE---VKVGEV 629 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPGDRVKSYIYDVRREQR 194 G V RVE V+L + ++ E ++ GD V + ++ ++ R Sbjct: 630 YLGKVVRVEKFGAFVNLIKGKDGLVHISQLANERVANVEDVVKLGDEVLVKVTEIDKQGR 689 Query: 195 GPQVLLSR 202 V LSR Sbjct: 690 ---VNLSR 694 >gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6] gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6] Length = 402 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 14/135 (10%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q +AR + + + + + S +Q + Q+ RE ++D Sbjct: 173 PETQKQSDMARMVNTDLQL-----KVIEINRNRNRLILSERQAV-QEARETKKDELLSRL 226 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G++ +GT+ V VD+G +DG++ E E L PGD+V+ I Sbjct: 227 K--EGDVRTGTISSVCDFGAFVDIGGADGLVHLSEISWSRVKHPSEVLHPGDKVQVSILS 284 Query: 189 VRREQRGPQVLLSRT 203 V +++ + + RT Sbjct: 285 VDHDRKRIALSIKRT 299 Score = 37.0 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 17/94 (18%) Query: 123 REAERDRQYLEFKD---------KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET-- 170 +AE +F + K G+ + GT+ R++ ++VD+G ++G++ E Sbjct: 24 MDAEDMALMEQFLNDPAHDYRNLKYGDTVDGTIMRIDKDEILVDIGAKAEGIVPSREMQS 83 Query: 171 ISREN---LRPGDRVKSYIYDVRREQRGPQVLLS 201 + E+ LR G + ++ V+ E + + +LS Sbjct: 84 LPAEDRAALRIGSELLVFV--VQSEDKEGRAILS 115 >gi|163736769|ref|ZP_02144188.1| Helix-hairpin-helix DNA-binding, class 1 [Phaeobacter gallaeciensis BS107] gi|161390639|gb|EDQ14989.1| Helix-hairpin-helix DNA-binding, class 1 [Phaeobacter gallaeciensis BS107] Length = 240 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + V +A +L G A +E +A E++ I + A ++ A++ Sbjct: 6 KLPGVGPALARILSENGCATIEAVAGKSPEELSKIPRIGKLRAAKLSAEAQKA 58 >gi|121605690|ref|YP_983019.1| 30S ribosomal protein S1 [Polaromonas naphthalenivorans CJ2] gi|120594659|gb|ABM38098.1| SSU ribosomal protein S1P [Polaromonas naphthalenivorans CJ2] Length = 561 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGAIVTGKVKTVDAKGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVSAVVVNVD 509 Query: 191 REQRGPQVLL 200 R+ R Q+ + Sbjct: 510 RKTRNIQLSV 519 >gi|121594810|ref|YP_986706.1| 30S ribosomal protein S1 [Acidovorax sp. JS42] gi|120606890|gb|ABM42630.1| SSU ribosomal protein S1P [Acidovorax sp. JS42] Length = 561 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|303256837|ref|ZP_07342851.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47] gi|330998916|ref|ZP_08322643.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859] gi|302860328|gb|EFL83405.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47] gi|329576130|gb|EGG57649.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859] Length = 564 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G +++G VK VE ++DLGN ++G +R E R L+ GD V + I ++ Sbjct: 457 KGSVVTGKVKSVEAKGAVIDLGNDTEGYLRASEIGPDRVEDARNVLKEGDEVTAAITNID 516 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 517 RKARSIQL 524 >gi|229822530|ref|YP_002884056.1| HhH-GPD family protein [Beutenbergia cavernae DSM 12333] gi|229568443|gb|ACQ82294.1| HhH-GPD family protein [Beutenbergia cavernae DSM 12333] Length = 330 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 381 FADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440 F E +A E+ ++ G A + A + +G+ + G E L ++ Sbjct: 198 FPTPEAIARADPDELRAVVGLTRARASSLTSLAAAFADGLALDT-----GPGSRERLLAL 252 Query: 441 PGIDSKIKVAL 451 PGI L Sbjct: 253 PGIGPWTADYL 263 >gi|20067695|emb|CAD29089.1| chimeric DNA-directed DNA polymerase bf4-16 [synthetic construct] Length = 334 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|300312983|ref|YP_003777075.1| 30s ribosomal protein S1 [Herbaspirillum seropedicae SmR1] gi|124483424|emb|CAM32585.1| 30s ribosomal subunit protein S1 [Herbaspirillum seropedicae] gi|300075768|gb|ADJ65167.1| 30s ribosomal subunit S1 protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISREN-------LRPGDRVKSYIYDV 189 G I++GTVK VE ++ L +G +R E ISR+ L+ GD V++ + ++ Sbjct: 476 KGAIVTGTVKSVEPKGAVIQLTDEVEGYLRASE-ISRDRVEDAGTHLKVGDSVEALVINI 534 Query: 190 RREQRGPQV 198 R+ R Q+ Sbjct: 535 DRKARSIQL 543 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + +D R V +++ +I+ ER + K G +++G VK + Sbjct: 175 GKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERAKLMETLK--EGTVVTGIVKNITDYG 232 Query: 154 VIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ R E L G + + + +E+ Sbjct: 233 AFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKVLKYDQEKN 279 Score = 37.4 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%) Query: 126 ERDRQYLEFKDKV----GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN----L 176 E + E + GE+IS V R+++ VIV+ G S+ I +E +N + Sbjct: 30 EFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEE-FKNDNGEVEV 88 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF----HMEVPEIYNGIV 224 GD + I + +LSR + + ME EI G V Sbjct: 89 NVGDFISVAIESLENGFGDT--ILSRDKAKRLASWLSLEKAMESGEIVTGTV 138 >gi|89890788|ref|ZP_01202297.1| 30S ribosomal protein [Flavobacteria bacterium BBFL7] gi|89516933|gb|EAS19591.1| 30S ribosomal protein [Flavobacteria bacterium BBFL7] Length = 619 Score = 39.3 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 17/147 (11%) Query: 69 VEEVENYTCQI---SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV Q A+ +P+ + +V K A Sbjct: 8 VAEVSTEETQAHTAPTATAQQTNPT-EFLDTFDWERYSEGIEKVDEDQLK---------A 57 Query: 126 ERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 F D + ++++G V ++ + I+D+ S+GVI +E NL+ GD+V+ Sbjct: 58 FEKLVEDNFVDTIDNDVMTGVVIKITDRDAIIDINAKSEGVISLNEFRYNPNLKEGDKVE 117 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVK 210 + DVR + G Q++LS + + Sbjct: 118 VLV-DVREDATG-QLVLSHRKARLIKA 142 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D +D +F V V K +I + E +++ Sbjct: 176 EAFLPGSQIDVKPIRDYDAYVDKTMEFKVVKINHEFKNVVVSH-KALIEADIEEQKKEII 234 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ G VK + V VDLG DG++ + E + + Sbjct: 235 ---SRLEKGQVLEGVVKNITSYGVFVDLGGVDGLVHITDLSWSRINHPNEVVELDQTLNV 291 Query: 185 YIYDVRREQRGPQV 198 I D ++ Q+ Sbjct: 292 VILDFDEDKSRIQL 305 >gi|329890647|ref|ZP_08268990.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568] gi|328845948|gb|EGF95512.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568] Length = 565 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN---LRPGDRVKSYIYDVRR 191 G+++ G V +E VI+D+G ++G I E E + GD V+ Y+ V Sbjct: 27 EGQVVHGRVVGIEKDIVIIDVGLKTEGRIAMREFGQGEGAVLPKVGDNVEVYLERVEN 84 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + + GEI G VK + VDLG DG++ Sbjct: 170 RGNIVVSRRAILEEARAEQRTELVGQL--QEGEIREGVVKNITDYGAFVDLGGIDGLLHV 227 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD VK I + + Sbjct: 228 TDMSWKRVSHPSQVLAVGDTVKVQIVKINPDT 259 >gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 401 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 39/192 (20%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + + +D + + + + +I++ RE + + VG+++ G V R+ Sbjct: 153 IGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLV--VGDVVEGRVSRLTNF 210 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 VD+G DG++ E + L+ G VK + + ++ + + +T P Sbjct: 211 GSFVDIGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270 Query: 207 FMVK---------LFHMEV---------PEIYNGIVQVKAVSRDP-------------GS 235 + + EV E+ +GI + VS G Sbjct: 271 PFEQATSSLNEGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGP 330 Query: 236 RAKLAVFSSDSS 247 + K+ V + D S Sbjct: 331 KVKVKVLNIDPS 342 >gi|222110591|ref|YP_002552855.1| 30S ribosomal protein s1 [Acidovorax ebreus TPSY] gi|221730035|gb|ACM32855.1| ribosomal protein S1 [Acidovorax ebreus TPSY] Length = 561 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|120611941|ref|YP_971619.1| 30S ribosomal protein S1 [Acidovorax citrulli AAC00-1] gi|120590405|gb|ABM33845.1| SSU ribosomal protein S1P [Acidovorax citrulli AAC00-1] Length = 561 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 174 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 23/108 (21%) Query: 104 MDFGRVAVQSAKQVI-IQKVREAERDRQYLE------FKDKVGEIISGTVKRVEYGNVIV 156 D G + + + I K++E + Q+ FK GE++ G V++V V + Sbjct: 43 KDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHKSGVFL 102 Query: 157 DLGNSDGV------IRRDETISREN----------LRPGDRVKSYIYD 188 G + + + E I E ++ G RV+ + D Sbjct: 103 RSGPYEIIYLSHVKMPGYEFIPGEKPIFMNQNMSRIQIGARVRFIVLD 150 >gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera genomosp. type_1 str. 28L] gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera genomosp. type_1 str. 28L] Length = 635 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 24/155 (15%) Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGG-VVSDPLPPMDFGRVAVQSAKQVIIQKV 122 RL +V E + T + + AR+ +PS G + + + K I++ + Sbjct: 219 RLAQVCREQDCPTYHV--ETAREINPSWFHGMSYIGITAGASTPDWIIQEVVK--IMENL 274 Query: 123 REAERDRQYLEFKD--------KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET-IS 172 + + E D K G+++ G V V V +G ++ ++ + E + Sbjct: 275 QAEGTEVMSEELLDQYDYEENLKKGDVVEGKVVSVTDDAAFVSIGTKAEAILPKKEIAVP 334 Query: 173 -----RENLRPGDRVKSYIYD-VRREQRGPQVLLS 201 + + GD K I V+ + +++S Sbjct: 335 APEKAGDVVHVGDEFKVVIASTVKEDS---TIVVS 366 >gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] Length = 671 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 9/99 (9%) Query: 352 QKDFNERTQFFMQAINVDEI---IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 ++ + F+ + V + A LL + F +E L E+ I G E A E Sbjct: 503 EESKDVELSSFIYGLGVPNVGTRTAELLADK-FKSLERLMEADKEELVEINGIGEVVAEE 561 Query: 409 IQGRAREYLEGIDIT-LQKKIRELGVSEELCSIPGIDSK 446 I ++ +I +++ E GV +I + Sbjct: 562 IV----DFFADENIQGSIQRMLEAGVEPNYEAIEEVQED 596 >gi|326316779|ref|YP_004234451.1| 30S ribosomal protein S1 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373615|gb|ADX45884.1| ribosomal protein S1 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 561 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] Length = 752 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 24/153 (15%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV------------EIQGRARE 415 V + +A +L F ++ LA +IA+ EG + A E+ R RE Sbjct: 583 VGKSVAEVLAQR-FLTIDALAAASEEDIAACEGIGPKIAASVREFLSVSENLEVLQRLRE 641 Query: 416 YLEGID----ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 ++ + + +E GV +L + +D + L + D AG + L Sbjct: 642 AGLALEENLGAAVAQAAQETGVDADLAAGQPLD-GLAFVLTGTLVNRTRDEAGAA---LK 697 Query: 472 GWSENKGGNIEKFDGFL---SSLGTPKDQVESM 501 G++ K +L G+ + ES+ Sbjct: 698 LLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 730 >gi|260220854|emb|CBA28836.1| 30S ribosomal protein S1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 587 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG+ G +R E R L+ GD V + + +V Sbjct: 479 KGQTVTGKVKTVDAKGAEIDLGDDILGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 538 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 539 RKTRNIQL 546 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 121 KVREAERDRQYLEFKDK----VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE--TISR 173 K+ + E + GE+I+ V R+E+ V+V+ G S+ + +E + Sbjct: 28 KLMSESFAALFEESLQRSEMRTGEVITAEVVRIEHSFVVVNAGLKSEAYVPIEEFKSDKG 87 Query: 174 E-NLRPGDRVKSYIYDVRREQRGPQVLLSR 202 E ++ GD V I V +LSR Sbjct: 88 EIEVQVGDFVSVAIDSVENGYGDT--ILSR 115 >gi|300023832|ref|YP_003756443.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888] gi|299525653|gb|ADJ24122.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888] Length = 572 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 13/149 (8%) Query: 51 VEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 V N G ++ V Q+ ++ RD P + + MD R Sbjct: 122 VIFNKVKGGFTVDLDGAVA---FLPGSQVDIRPVRDIGPL--MHQQQPFQILKMDRRRGN 176 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + +++ ++++ R +R G+II G VK + +DLG DG++ + Sbjct: 177 IVVSRRSVLEESRAEQRTEIVARLA--EGQIIDGLVKNITDYGAFIDLGGIDGLLHVTDM 234 Query: 171 I------SRENLRPGDRVKSYIYDVRREQ 193 E L GD VK I + E Sbjct: 235 AWRRVNHPSEILNVGDTVKVQIIRINPET 263 >gi|209875975|ref|XP_002139430.1| Rad51 protein [Cryptosporidium muris RN66] gi|209555036|gb|EEA05081.1| Rad51 protein, putative [Cryptosporidium muris RN66] Length = 351 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 326 QNVRLASQLTGW---TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 NV +S +T + ID TE+ + + + + + ++ LL G+ Sbjct: 4 INVNSSSDVTEFISANIDENTEKNSNGPLKLEHLLSSGLTKRDLD-------LLRENGYH 56 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRARE 415 VE LA + I+G E+ +I+ ++ Sbjct: 57 TVECLAYAPKRSLLCIKGISEQKCEKIKTACKD 89 >gi|325279173|ref|YP_004251715.1| RNA binding S1 domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324310982|gb|ADY31535.1| RNA binding S1 domain protein [Odoribacter splanchnicus DSM 20712] Length = 621 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 129 RQYLEFKDKVGE--IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 ++Y E KVGE ++ GTV + V+V++G SDG+I +E L+ GD+V+ Y Sbjct: 53 QKYAETLSKVGEKEVVEGTVISMNKREVVVNIGYKSDGIISLNEFRYNPELKVGDKVEVY 112 Query: 186 IYDVRREQRGPQVLLS 201 + + + +++G Q+ LS Sbjct: 113 V-ETQEDKKG-QLTLS 126 >gi|241764520|ref|ZP_04762540.1| ribosomal protein S1 [Acidovorax delafieldii 2AN] gi|241366056|gb|EER60660.1| ribosomal protein S1 [Acidovorax delafieldii 2AN] Length = 561 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ ++G VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 450 KGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 687 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 79/214 (36%), Gaps = 23/214 (10%) Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83 ++ ++ + DS++K + I V+ + +F ++ + +++ + Sbjct: 279 KEEFMNSLEDSLKKIYPKEIVKGTVIDVKDD------EVFVDIQFRADGIIKLDEMTEEE 332 Query: 84 ARDRDPSIDIGGVVS-DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEII 142 A+D S ++G + + D S ++V KV + K + E++ Sbjct: 333 AKDPKNSFNVGDEIDVFVIKLDDGEGNVALSTRRVEGMKVWQELAQ------KAENDELV 386 Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY-----IYDVRREQRGPQ 197 G V G + V++ +G + + + K + + ++R + Sbjct: 387 HGEVVSFNKGGLTVNVNGVNGFVPASQIA---TYFVKNFKKFVGEQWDLKIISIDERKNR 443 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 ++LSR + + E+ G V V+R Sbjct: 444 LVLSRK--DVVEEELDNLWDELEEGQVVKGKVAR 475 >gi|219854800|ref|YP_002471922.1| hypothetical protein CKR_1457 [Clostridium kluyveri NBRC 12016] gi|219568524|dbj|BAH06508.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 640 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 ++ G V+R+ VD+ DG++ E + L+ GD+++ YI DV RE Sbjct: 483 VVEGEVRRLTDFGAFVDVQGVDGLLHVSELSWGRVNKPGDVLKIGDKIQVYILDVNRE 540 >gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030] gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030] Length = 488 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GT+ +V+ V+VD+G ++GVI E E + GD +++ + + Sbjct: 39 GDIVEGTIVKVDRDEVLVDIGYKTEGVILSRELSIKHDVDPAEVVEVGDPIEALVL--TK 96 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 97 EDKDGRLMLS 106 >gi|284165727|ref|YP_003404006.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Haloterrigena turkmenica DSM 5511] gi|284015382|gb|ADB61333.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Haloterrigena turkmenica DSM 5511] Length = 530 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%) Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + ++ ++ T V + A L G E+L ++E+A+ G Sbjct: 455 VEEVTDEDVDAGSAIESETDDLTDLDGVGQAYADTLAEAGIETFEQLVDADVAELAAETG 514 Query: 401 FDEETAVEIQGRA 413 + +A Sbjct: 515 ISPSRIEDWIEQA 527 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 19/116 (16%) Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE I V G DV+E + +E + D + E+ + I+ Sbjct: 427 DEEI----VERGEDDVQE----EPAEPGEM-NVDADVVEEVTDEDVDAGSAIESE----- 472 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++L + G+ L E GI+T E L V +L + IE + Sbjct: 473 -----TDDLTDLDGVGQAYADTLAEAGIETFEQLVDADVAELAAETGISPSRIEDW 523 >gi|226356064|ref|YP_002785804.1| excinuclease ABC subunit C [Deinococcus deserti VCD115] gi|226318054|gb|ACO46050.1| putative UvrABC system protein C (Excinuclease ABC, subunit C) [Deinococcus deserti VCD115] Length = 617 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 L G ++ + + + F + + L+ F +E+LA + Sbjct: 526 MLIGVRDEVHNYAVTYHRKLRGQDMLRSVFDDLPGIGQKRRDALLEH-FTSLEDLAAAPV 584 Query: 393 SEIASIEGFDEETAVEIQG 411 +IA++ G A ++ Sbjct: 585 EQIAAVPGMTTRAAQSVKT 603 >gi|148747154|ref|NP_058837.2| DNA polymerase beta [Rattus norvegicus] gi|585064|sp|P06766|DPOLB_RAT RecName: Full=DNA polymerase beta gi|640121|pdb|2BPF|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase Beta, A Dna Template-Primer, And Ddctp gi|640124|pdb|2BPG|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase Beta, A Dna Template-Primer, And Ddctp gi|640127|pdb|2BPG|B Chain B, Structures Of Ternary Complexes Of Rat Dna Polymerase Beta, A Dna Template-Primer, And Ddctp gi|14277831|pdb|1HUO|A Chain A, Crystal Structure Of Dna Polymerase Beta Complexed With Dna And Cr-Tmppcp gi|14277832|pdb|1HUO|B Chain B, Crystal Structure Of Dna Polymerase Beta Complexed With Dna And Cr-Tmppcp gi|14277837|pdb|1HUZ|A Chain A, Crystal Structure Of Dna Polymerase Complexed With Dna And Cr-Pcp gi|14277838|pdb|1HUZ|B Chain B, Crystal Structure Of Dna Polymerase Complexed With Dna And Cr-Pcp gi|157830424|pdb|1BPD|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For A Common Polymerase Mechanism gi|71051051|gb|AAH98668.1| Polymerase (DNA directed), beta [Rattus norvegicus] gi|149057766|gb|EDM09009.1| rCG43201 [Rattus norvegicus] Length = 335 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium GSS1] gi|20139594|sp|Q97BJ9|RADA_THEVO RecName: Full=DNA repair and recombination protein radA gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1] Length = 323 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 ++ E+ V E A L G+ D+ +A +++ + G E A +I Sbjct: 4 NEENKEKKTTLEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKIIA 63 Query: 412 RAREYLEGIDITLQKKIRE 430 AR++ + + ++I E Sbjct: 64 AARKFADIGNFETGEEILE 82 >gi|14591093|ref|NP_143168.1| ski2-like helicase [Pyrococcus horikoshii OT3] gi|18202084|sp|O59025|HELS_PYRHO RecName: Full=Putative ski2-type helicase gi|3257700|dbj|BAA30383.1| 715aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 715 Score = 39.3 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 M+ + A L GF D+E + + +E+ +EG + I Sbjct: 643 LMELPMIGRKRARALYNAGFRDLESIKNARPAELLEVEGIGAKIVEAILK 692 >gi|42566796|ref|NP_193202.2| NRPE7; DNA-directed RNA polymerase [Arabidopsis thaliana] gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana] gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana] Length = 178 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 27/112 (24%) Query: 108 RVAVQSAKQVIIQKVREAERDRQY------LEFKDKVGEIISGTVKRVEYGNVIVDLGNS 161 VAV + ++ K+RE + + + FK GEII G V +V V + G Sbjct: 49 YVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPI 108 Query: 162 DGV------IRRDETISREN----------LRPGDRVKSYI-----YDVRRE 192 + V + + I EN ++ V+ + +V RE Sbjct: 109 ENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVERE 160 >gi|206278|gb|AAA41901.1| DNA polymerase beta [Rattus norvegicus] gi|1055330|gb|AAB00389.1| high molecular weight DNA polymerase beta [Rattus norvegicus] Length = 335 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|320580957|gb|EFW95179.1| DNA repair protein Rad51 [Pichia angusta DL-1] Length = 369 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + L GF VE +A I +++G E+ A ++ A + Sbjct: 54 GITPQDIKKLKEAGFHTVESIAYTPKRHIVTVKGISEQKADKLLMEASK 102 >gi|153954192|ref|YP_001394957.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium kluyveri DSM 555] gi|146347073|gb|EDK33609.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-related protein [Clostridium kluyveri DSM 555] Length = 637 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 ++ G V+R+ VD+ DG++ E + L+ GD+++ YI DV RE Sbjct: 480 VVEGEVRRLTDFGAFVDVQGVDGLLHVSELSWGRVNKPGDVLKIGDKIQVYILDVNRE 537 >gi|32250967|gb|AAP74362.1| DNA repair protein Rad51 [Pichia angusta] Length = 369 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + L GF VE +A I +++G E+ A ++ A + Sbjct: 54 GITPQDIKKLKEAGFHTVESIAYTPKRHIVTVKGISEQKADKLLMEASK 102 >gi|16605546|emb|CAC86603.1| Rad51A protein [Physcomitrella patens] gi|16605577|emb|CAC82996.1| Rad51A protein [Physcomitrella patens] Length = 342 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%) Query: 343 TEEEDSINRQKDFNERTQFFMQAI---NVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 TE + ++ + ++ + + + L GF VE +A ++ I+ Sbjct: 8 TEGVTTSAATEEEVHHGPYLVEQLQNCGISSLDLKKLKDAGFCTVESVAYSAKKDLVLIK 67 Query: 400 GFDEETAVEIQGRAREYLE---GIDITLQKKIREL 431 G + +I A + + + ++ EL Sbjct: 68 GLSDAKVDKIIEAATKLVPMGFTSAKQMHEQRAEL 102 >gi|148688331|gb|EDL20278.1| mCG128467, isoform CRA_b [Mus musculus] Length = 1066 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + I+ A +I A+ L Sbjct: 968 LMEVTGVLEGRAKQLYNAGYRSIMHLANANPEVLVKTIDHLSRRQARQIVSSAKMLLHEK 1027 Query: 421 DITLQKKIRELGVSEELCSIP 441 LQ G +EEL +P Sbjct: 1028 AEALQ------GEAEELLRLP 1042 >gi|52139047|gb|AAH82601.1| Helicase, mus308-like (Drosophila) [Mus musculus] Length = 1069 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + I+ A +I A+ L Sbjct: 971 LMEVTGVLEGRAKQLYNAGYRSIMHLANANPEVLVKTIDHLSRRQARQIVSSAKMLLHEK 1030 Query: 421 DITLQKKIRELGVSEELCSIP 441 LQ G +EEL +P Sbjct: 1031 AEALQ------GEAEELLRLP 1045 >gi|313227586|emb|CBY22733.1| unnamed protein product [Oikopleura dioica] Length = 6995 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 25/200 (12%) Query: 340 DIITEEEDSINRQKDFNERTQFFM-QAINVDEIIAHLLVAEGF----ADVE---ELACVK 391 D++ ++ K + + ++ + IA + E F VE +L+ + Sbjct: 6177 DLMASANLEASQIKLATDSIDIHQSEITDLAQNIAEI---EMFKQMQQSVENNDDLSRAE 6233 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451 ++ E A + RARE + + ++R+ G+ + Sbjct: 6234 KDKLLR------ELAEA-RQRARENADAARQRQKDRLRDRLAQRRGLVERGMSISEADKI 6286 Query: 452 -----GENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIH-A 505 NG EDLA ++ L + K E L + +I Sbjct: 6287 LDDIHESNGTSEEEDLAILPDNEELKDNMLKSAEEEARRQALEE-NLDPSDADKLIQEHL 6345 Query: 506 RYKMGWIEKEKVADEEVQDA 525 R + E + ++ +DA Sbjct: 6346 RKAQDLYDSEALKKQQERDA 6365 >gi|187734759|ref|YP_001876871.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835] gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835] Length = 562 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 14/134 (10%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E Q+ + RD + + G V + ++ R + +++ +I EAER Sbjct: 119 VGVEAFLPGSQVDIIPPRDLNEYV--GKVYEFKIVKVNDDRKNIVLSRREVI----EAER 172 Query: 128 DRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPG 179 Q F + K G+ + G VK + VDL DG++ + E L G Sbjct: 173 ADQRQRFLETVKEGDKVEGIVKNITDFGAFVDLRGMDGLLHITDMSWGRVNHPSEMLHIG 232 Query: 180 DRVKSYIYDVRREQ 193 ++ I +V RE+ Sbjct: 233 QSLEVVILEVDREK 246 Score = 37.7 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 128 DRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 + +F++ + G I++GT++ + V+VD+G S+G I E E + GD+++ Sbjct: 8 ELIDSKFRELREGSIVTGTIQEIRPQVVLVDIGYKSEGAISISE-FEDEEIEVGDQIEVL 66 Query: 186 IYDVRREQ 193 + + ++ Sbjct: 67 LERLENDE 74 >gi|156098342|ref|XP_001615203.1| DNA repair protein RAD51 [Plasmodium vivax SaI-1] gi|148804077|gb|EDL45476.1| DNA repair protein RAD51, putative [Plasmodium vivax] Length = 350 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 LL G VE +A + + +I+G E+ A +++ +E Sbjct: 49 ELLKEGGLQTVECVAYAPMRTLCAIKGISEQKAEKLKKACKE 90 >gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112] gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC] gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112] gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC] gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1118] Length = 403 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER+ + + + VG++I G V R+ +D+G DG++ E Sbjct: 176 HKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLNEGDVFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKLA--VFSSDSSIDP 250 E+ +GI + VS P K+ V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342 >gi|312079928|ref|XP_003142383.1| hypothetical protein LOAG_06799 [Loa loa] gi|307762450|gb|EFO21684.1| hypothetical protein LOAG_06799 [Loa loa] Length = 440 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 40/180 (22%) Query: 250 PVGACVGMRGSRVQAVVTELR---------------DEKI--------------DIVVWS 280 VGA +G G ++ + +E +E+I D+++ Sbjct: 44 AVGALIGKGGETMRNLKSESGCRLQMSKNQEVYPGTNERICLVKGKIASVLKVSDVIL-- 101 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 V N P+ + E ++++VP + IG+ G ++ + TG I Sbjct: 102 EKIREKVDNN-TPSDIFDHKGMERKNEMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQ 160 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + + + T Q DE++ L +E++A +A+I Sbjct: 161 VYPKAGSQEAKVSQERIITIAAEQ----DEVLMDALQRV----LEKVAADPQHAMATIPD 212 >gi|225873902|ref|YP_002755361.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196] gi|225793852|gb|ACO33942.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196] Length = 637 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 R+ IG + + ++ R V +++ I+++ + A+R + G I++GTV Sbjct: 225 RNLDAYIGQPIEVRVIKLNKKRGNVVVSRKEILEEEQTAKRSETLEHLE--EGSILTGTV 282 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + VD+G DG++ + R+ + GD ++ + R++ Sbjct: 283 KNLTDYGAFVDMGGIDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKFDRDK 335 >gi|124487403|ref|NP_001074576.1| helicase POLQ-like [Mus musculus] gi|123792912|sp|Q2VPA6|HELQ_MOUSE RecName: Full=Helicase POLQ-like; AltName: Full=Mus308-like helicase; AltName: Full=POLQ-like helicase gi|115344367|gb|AAI09171.2| Helicase, mus308-like (Drosophila) [Mus musculus] Length = 1069 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAVEIQGRAREYLEGI 420 M+ V E A L G+ + LA + I+ A +I A+ L Sbjct: 971 LMEVTGVLEGRAKQLYNAGYRSIMHLANANPEVLVKTIDHLSRRQARQIVSSAKMLLHEK 1030 Query: 421 DITLQKKIRELGVSEELCSIP 441 LQ G +EEL +P Sbjct: 1031 AEALQ------GEAEELLRLP 1045 >gi|218778787|ref|YP_002430105.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01] gi|218760171|gb|ACL02637.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01] Length = 616 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 130 QYLEFKDK--VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVK 183 Y E + GE+++G + +++ V+VD+G S+G+I E I + GD V+ Sbjct: 60 LYEESFKRFEEGEVVTGKIIQIDKDYVLVDIGYKSEGLIPIREFIEPDGTVAAEIGDEVE 119 Query: 184 SYIYDVRREQRGPQVLLS 201 + + E G V++S Sbjct: 120 VMVERLDSEDEG--VMVS 135 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ RD D +G V + + + R + +++VI++K RE +R Sbjct: 181 PGSQVDLRPVRDLDS--MVGKVFTFKVLKYNRKRSNIVLSRRVILEKEREEQRSSTLQNI 238 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G+++ G VK + V VDLG DG++ + E G + + D Sbjct: 239 --HEGKVVEGVVKNITEYGVFVDLGGIDGLLHITDISWGRVKHPSELFGVGQTITVKVLD 296 Query: 189 VRREQ 193 + E+ Sbjct: 297 LDLER 301 >gi|114328686|ref|YP_745843.1| 30S ribosomal protein S1 [Granulibacter bethesdensis CGDNIH1] gi|114316860|gb|ABI62920.1| SSU ribosomal protein S1P [Granulibacter bethesdensis CGDNIH1] Length = 571 Score = 38.9 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS---RENLRPGDRVKSYIYDVRREQR 194 G ++SG V R++ VIVD+G S+G + E + +++PGD V+ Y+ R E R Sbjct: 32 GSVVSGRVLRIDPEFVIVDVGLKSEGRVALKEFGPPGQKPDVKPGDVVELYVE--RYEDR 89 Query: 195 GPQVLLSR 202 ++LSR Sbjct: 90 DGSIVLSR 97 >gi|317470865|ref|ZP_07930246.1| hypothetical protein HMPREF1011_00593 [Anaerostipes sp. 3_2_56FAA] gi|316901692|gb|EFV23625.1| hypothetical protein HMPREF1011_00593 [Anaerostipes sp. 3_2_56FAA] Length = 189 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 4/98 (4%) Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 G + I +E ++++ + +Q + + IA L A G V++L E+ Sbjct: 84 GLRVQINNLKEYGKRQKQENSSGSQDLQTVPGIGKRIAQHLNAIGIYCVDDLKGRDPEEL 143 Query: 396 ASIE----GFDEETAVEIQGRAREYLEGIDITLQKKIR 429 S++ GF E+ R Y + +K++ Sbjct: 144 YSMDCIQKGFTEDRCELYVFRCAVYYAEHEEHDPEKLK 181 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDL 462 EE A ++ + E Q+ S++L ++PGI +I L GI ++DL Sbjct: 79 EENAAGLRVQINNLKEYGKRQKQENSSG---SQDLQTVPGIGKRIAQHLNAIGIYCVDDL 135 Query: 463 AGCSVDDLLGWSENKGGNIEKFDGF 487 G ++L + G E Sbjct: 136 KGRDPEELYSMDCIQKGFTEDRCEL 160 >gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus DSM 2088] gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus DSM 2088] Length = 311 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 21/54 (38%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 NV + A L GF D+ +A E+A E A +I AR+ Sbjct: 4 LENLPNVGQKTAKKLRDAGFGDIMRIATATPKELAVKAEIGEGIAEKIIAAARK 57 >gi|329847165|ref|ZP_08262193.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19] gi|328842228|gb|EGF91797.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19] Length = 562 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + GEI G VK + VDLG DG++ Sbjct: 167 RGNIVVSRRAILEEARAEQRTELVGQLA--EGEIRDGVVKNITDYGAFVDLGGIDGLLHV 224 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD V+ I + + Sbjct: 225 TDMSWKRVSHPSQVLNVGDAVRVQIIKINPDT 256 >gi|313901827|ref|ZP_07835249.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467909|gb|EFR63401.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM 13965] Length = 558 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G++ +G VK + +DLG DG++ E R+ L+ GD ++ + V R Sbjct: 345 EGQVRTGVVKGLTDFGAFIDLGGVDGLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLKVDR 404 Query: 192 EQRGPQVLLS 201 E RG ++ LS Sbjct: 405 E-RG-RISLS 412 >gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3] gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3] Length = 413 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + I++ E ++ + E + G+++ G V R+ Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQP--GDVVEGKVARMTNFG 216 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ E + L G VK + V ++ Sbjct: 217 AFVDLGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDR 262 >gi|217967981|ref|YP_002353487.1| PHP domain protein [Dictyoglomus turgidum DSM 6724] gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724] Length = 580 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 27/127 (21%) Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 ++I E + I ++ R + N+ E I L +G ++ I Sbjct: 17 LEIKGENKYKIAAYQEAARRIE------NLPEDI-ERLFKQG-------------KLYQI 56 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIPGIDSKIKVAL-GENG 455 +G E +I +EYL ++ +++R+ E EL IPGI K+ L E G Sbjct: 57 KGIGESIGQKI----KEYLTTGKVSYLEELRKEIPPEILELLKIPGIGPKLAYRLYAELG 112 Query: 456 IKTMEDL 462 IK ++ L Sbjct: 113 IKDIDSL 119 >gi|291545887|emb|CBL18995.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5] Length = 358 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ------KV 122 V +V + ++++ AR P+ + D + A Q + VI + ++ Sbjct: 114 VTQVLDGGLCVNVEEARVFIPASLVSDTYE-----KDLSKYADQEIEFVITEFNPRRRRI 168 Query: 123 REAERDRQYLEFKDK---------VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 + E +K VG+ + G VK V +DLG +DG++ E Sbjct: 169 IGNRKQLLLAEKAEKQKELLAKINVGDKVEGVVKNVTDFGAFIDLGGADGLLHISEMSWG 228 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ GD+V I D+ G ++ LS P+ Sbjct: 229 RVENPKKVFNVGDKVTVLIKDI----NGDKIALSLKFPE 263 >gi|207108733|ref|ZP_03242895.1| 30S ribosomal protein S1 [Helicobacter pylori HPKX_438_CA4C1] Length = 283 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 P + + + Q Q I K+ E + II G + G IV+ Sbjct: 92 EHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEGKIVGKNKGGYIVESQ 140 Query: 160 NSDGVIRRDET-ISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + + R + + + G R+K+ I V +E + +SR Sbjct: 141 GVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENH--SINISR 182 >gi|119719925|ref|YP_920420.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk 5] gi|119525045|gb|ABL78417.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk 5] Length = 358 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 14/103 (13%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 V I A L A GF V +LA E+A + G EE A+ I A + + Sbjct: 50 LEDLEGVGRITAQKLRAAGFYTVRDLAFASAHELALVLG-SEERAMAIIRSA----QRLV 104 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464 ++ I + E+ +I I + G+++++DL Sbjct: 105 NRGEEFITAKTLFEKRKNIEYIST---------GVRSLDDLLE 138 >gi|86606941|ref|YP_475704.1| hypothetical protein CYA_2313 [Synechococcus sp. JA-3-3Ab] gi|86555483|gb|ABD00441.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 527 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 LL G +E LA ++ + +I A+++Q +AR L Sbjct: 272 LLQEAGIHSIEALANARLEMLQAIPKLGAGVALQLQLQARATLSRK 317 >gi|254573234|ref|XP_002493726.1| Transcription elongation factor [Pichia pastoris GS115] gi|238033525|emb|CAY71547.1| Transcription elongation factor [Pichia pastoris GS115] gi|328354449|emb|CCA40846.1| Transcription elongation factor SPT6 [Pichia pastoris CBS 7435] Length = 1500 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 21/126 (16%) Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERD-RQYLE---FKD---------KVGEIISG 144 R +Q K+ + + RE RD E F+ + G +I Sbjct: 1111 ELERKHQLKKRSTLQIIKEELQSRYREIRRDFHILNEAEIFQLLTRETVDSFRKGMVIPV 1170 Query: 145 TVKRVEYGNVIV--------DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 V++VE + V ++ D + D RE G V++ I DV Sbjct: 1171 YVRKVESSYMSVSTQSLIAGNIQRQDILEPNDRRDPREVYSVGQTVRACILDVDYYNFKC 1230 Query: 197 QVLLSR 202 Q+ L R Sbjct: 1231 QLSLLR 1236 >gi|206276|gb|AAA41900.1| polymerase beta [Rattus norvegicus] Length = 318 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 40 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 95 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 96 KLVDEGIKTLEDL 108 >gi|319956088|ref|YP_004167351.1| SSU ribosomal protein s1p [Nitratifractor salsuginis DSM 16511] gi|319418492|gb|ADV45602.1| SSU ribosomal protein S1P [Nitratifractor salsuginis DSM 16511] Length = 556 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI-------SRENLRPGDRVKSYIYDV 189 VG+ ++ TV +E V VDLG + + + E ++ L GD + + ++ Sbjct: 283 VGDTVTATVSNIEPYGVFVDLGEDLEAFLHVSEISWDKNVKHPKDFLNVGDEIDVEVIEI 342 Query: 190 RREQRGPQVLLSRTH 204 RE+R ++ +SR Sbjct: 343 DREKR--RLRVSRKS 355 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 45/198 (22%) Query: 42 LYGTMSDIRV-EINPETGDISL------------FRLLEVVEE--------VEN------ 74 G D+ V EI+ E + + F V + V + Sbjct: 330 NVGDEIDVEVIEIDREKRRLRVSRKSLLPKPMEEFAQKHRVGDIVTGTVSSVTDFGAFVR 389 Query: 75 ---------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + + S ++ ++G V + +D + K + +K E Sbjct: 390 LDGGVEGLLHNQEASWDKSKRAKDLFNVGDEVEVKIIKIDTD-----AGKISLSKKALEK 444 Query: 126 ERDRQYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISR--ENLRPGDRV 182 + E + KVG+I++GTVK + ++G I N D +IR ++ + + G + Sbjct: 445 SPVETFAE-EHKVGDIVTGTVKDKKDFGVFIALDDNVDALIRTEDLAPLNFDEIERGQEI 503 Query: 183 KSYIYDVRREQRGPQVLL 200 K I + +V + Sbjct: 504 KGVITHIDPRNDRIRVSV 521 >gi|319762547|ref|YP_004126484.1| ribosomal protein s1 [Alicycliphilus denitrificans BC] gi|330824564|ref|YP_004387867.1| 50S ribosomal protein S1 [Alicycliphilus denitrificans K601] gi|317117108|gb|ADU99596.1| ribosomal protein S1 [Alicycliphilus denitrificans BC] gi|329309936|gb|AEB84351.1| ribosomal protein S1 [Alicycliphilus denitrificans K601] Length = 561 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ +SG VK V+ +DLGN G +R E R L+ GD V + + +V Sbjct: 450 KGQTVSGKVKTVDARGAEIDLGNDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 509 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 510 RKTRNIQL 517 >gi|241651548|ref|XP_002411283.1| conserved hypothetical protein [Ixodes scapularis] gi|215503913|gb|EEC13407.1| conserved hypothetical protein [Ixodes scapularis] Length = 610 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 R+E+ VP Q+ IG+ GQ VR +LT I + E +++ + + + +FF Sbjct: 521 RVEIFVPSNQVGRIIGKGGQTVRELQRLTRALIKLPDESQNANSEETPVHILGEFF 576 >gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter smithii ATCC 35061] gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii DSM 2375] gi|166218764|sp|A5UMW0|RADA_METS3 RecName: Full=DNA repair and recombination protein radA gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC 35061] gi|222435201|gb|EEE42366.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii DSM 2375] Length = 311 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +V E A L GFAD+ LA E++ E A ++ AR+ Sbjct: 4 LEDLPSVGEKTAEKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARK 57 >gi|169844731|ref|XP_001829086.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130] gi|116509826|gb|EAU92721.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130] Length = 1462 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 17/117 (14%) Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRV 182 Q +FK GEI+ GT+K V + V L GN DGVI + +PG+ + Sbjct: 513 QLEDFKP--GEIVKGTIKSVSDSAIFVSLSGNIDGVIWPNHFADIRLKHPTRRFKPGNPI 570 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 K + V +++ R L ++P I + + VK + G K+ Sbjct: 571 KCKVLVVDSDRK-------RISLTAKKTLLESDLP-IVSNVGDVKVGTVTHGVIFKV 619 >gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436] gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436] Length = 481 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 9/96 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 K G+I+ GTV +V++ V++D+G ++GVI E + ++ GD+V++ + Sbjct: 33 KEGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIAPEDIVKIGDKVEALVL-- 90 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 + E + ++LLS+ Q+ +E + +G+V Sbjct: 91 QMEDKEGRLLLSKKRAQYERAWGTIEKVKEEDGVVT 126 >gi|254168995|ref|ZP_04875834.1| Anticodon-binding domain family [Aciduliprofundum boonei T469] gi|197622101|gb|EDY34677.1| Anticodon-binding domain family [Aciduliprofundum boonei T469] Length = 1007 Score = 38.9 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F +D+ A LL G+ + EL + +IA G + A E+ Sbjct: 762 VINAFKSIPGIDDYRAELLFKMGYGSIYELMEAEPEQIAEATGMPLKLANELID 815 >gi|262276736|ref|ZP_06054529.1| 30S ribosomal protein S1 [alpha proteobacterium HIMB114] gi|262223839|gb|EEY74298.1| 30S ribosomal protein S1 [alpha proteobacterium HIMB114] Length = 570 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q++ + ++ + ++ + + + S +QVI Q+ + +++ + Sbjct: 145 PNSQVADRPIKNMNEYMNKPMEFQI-IKIDNVRMNVIASRRQVIEQE-KNKNKEKVIKNY 202 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYD 188 K VG+++ GT+K V+ V + + D ++ E + G+++K + + Sbjct: 203 K--VGDVVEGTIKAVQSYGCFVSIESLDCLLHSSEVSHLKISNLNDMFTVGEKIKVKVLE 260 Query: 189 VRREQ 193 + E Sbjct: 261 IDNEN 265 >gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001] gi|229552180|ref|ZP_04440905.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1] gi|258508384|ref|YP_003171135.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG] gi|258539595|ref|YP_003174094.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus Lc 705] gi|199590391|gb|EDY98483.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001] gi|229314482|gb|EEN80455.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1] gi|257148311|emb|CAR87284.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus GG] gi|257151271|emb|CAR90243.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus Lc 705] gi|259649698|dbj|BAI41860.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG] Length = 436 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 D + G + + ++ + + + I++ + R + + + G+++ G V Sbjct: 153 EDLNQYKGKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEIFAKIQP--GDVVEGKV 210 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLL 200 R+ VDLG DG++ E + L+ G +K + +V ++ ++ L Sbjct: 211 ARLTNFGAFVDLGGVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRN--RISL 268 Query: 201 S 201 S Sbjct: 269 S 269 >gi|169237523|ref|YP_001690727.1| hypothetical protein OE5289R [Halobacterium salinarum R1] gi|167728750|emb|CAP15609.1| hypothetical protein OE5289R [Halobacterium salinarum R1] Length = 478 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 15/135 (11%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID--ITL 424 V A LL +LA ++ EIA ++G ++TA I A E +E + + Sbjct: 204 GVGHRRAELLNNAEIRSRADLAQAEVYEIAQLDGIGKKTARTIVESA-EVVEQREARVAP 262 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK----GGN 480 + + G++ + + G+ T S D + + E Sbjct: 263 DESLPSREPIFIDIETDGLNPTMVWLI---GVVTR-----ASGDRFIPFIETDPEKPAAA 314 Query: 481 IEKFDGFLSSLGTPK 495 + F +L+ G + Sbjct: 315 LRAFMDWLAEFGRNR 329 >gi|67521554|ref|XP_658841.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4] gi|9904315|gb|AAB39323.2| ARECA [Emericella nidulans] gi|40746674|gb|EAA65830.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4] Length = 344 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L V G+ VE +A + I+G E+ A +I A Sbjct: 35 IKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKILVEA 75 >gi|297380231|gb|ADI35118.1| ribosomal protein S1 [Helicobacter pylori v225d] Length = 552 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR-DETISR 173 K + QK+++ + E + II G + G IV+ + + R ++ Sbjct: 96 KAISQQKIQDKIEE--LGE--NYENAIIEGKIVGKNKGGYIVESQGVEYFLSRSRSSLKN 151 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G R+K+ I V +E + +SR Sbjct: 152 DANHIGKRIKACIIHVDKENH--SINISR 178 >gi|304436633|ref|ZP_07396602.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370329|gb|EFM23985.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 376 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L +D S+ + V + +D + + +++ ++++ R + + + Sbjct: 134 PASQMELHFVKDL--SVYVDQTVEAEIIEIDVQKRRLVLSRRKLLERDRAEKEEAVFSAI 191 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + +I+ GTVKR+ +D+G DG+ + E L G + Y+ Sbjct: 192 EP--EQIVRGTVKRLVDYGAFIDIGGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKS 249 Query: 189 VRREQRGPQVLL 200 V R+ + + + Sbjct: 250 VDRDAKRISLSV 261 >gi|162605684|ref|XP_001713357.1| DNA repair protein Rad51 homolog [Guillardia theta] gi|13794289|gb|AAK39666.1|AF083031_23 DNA repair protein Rad51 homolog [Guillardia theta] Length = 331 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + E + + + + I++ +I L GF +E LA + ++ I G Sbjct: 1 MNNIEMPSTSNEQWKHISILESKGISLTDI--KKLQDSGFHTIESLAYIPKKKLIEIRGI 58 Query: 402 DEETAVEIQ 410 E A +I Sbjct: 59 SELKAEKIL 67 >gi|325103294|ref|YP_004272948.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145] gi|324972142|gb|ADY51126.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145] Length = 1008 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 8/129 (6%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK--VGEIIS 143 D P ID + L V + + E+ + Q E K G+I+ Sbjct: 610 DVKPVIDYDSYIGKTLDFKIVKISEANQNTVVSRRLIIESVIEMQREEISKKLEKGQILE 669 Query: 144 GTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQ 197 GT+K + Y +DLG DG++ + + L ++ + D ++ Sbjct: 670 GTIKNITYFGAFIDLGGIDGLLYITDISWGRINHPSDLLELNQKIHVVVLDYEDNKKRIS 729 Query: 198 VLLSRTHPQ 206 + L + HP Sbjct: 730 LGLKQLHPN 738 >gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571] gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571] Length = 403 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 119 IQKVREAERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI----- 171 + + E ER+ + + + VG++I G V R+ +D+G DG++ E Sbjct: 176 HKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVD 235 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK---------LFHMEV----- 216 + L+ G VK + + ++ + + +T P + +F EV Sbjct: 236 KPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTN 295 Query: 217 ----PEIYNGIVQVKAVSRD-------PGSRAKL--AVFSSDSSIDP 250 E+ +GI + VS P K+ V +IDP Sbjct: 296 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDP 342 >gi|149907677|ref|ZP_01896424.1| hypothetical protein PE36_07307 [Moritella sp. PE36] gi|149809347|gb|EDM69276.1| hypothetical protein PE36_07307 [Moritella sp. PE36] Length = 252 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 V++ +A L GF ++++A +K+ E+ ++G + +A +I A + L ++ Sbjct: 199 GVNKKVAESLENNGFTTMQKIAELKVEELVILDGIGKVSAKKI---AEDCLNIKELR 252 >gi|1816461|emb|CAB02454.1| uvsC [Emericella nidulans] gi|259488442|tpe|CBF87878.1| TPA: UvsC protein [Source:UniProtKB/TrEMBL;Acc:P78579] [Aspergillus nidulans FGSC A4] Length = 348 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L V G+ VE +A + I+G E+ A +I A Sbjct: 39 IKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKILVEA 79 >gi|295293739|gb|ADF88266.1| RNA-binding S1 domain-containing protein [Aphanizomenon sp. 10E6] Length = 300 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 18/102 (17%) Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISR------ENLRPGDRVKSY 185 +++ + G+++ G V +V++ VD+ G S + ++E R E L + ++ Sbjct: 28 DYQFQKGQVVRGKVFQVDHDGAYVDIGGKSSAFLPQEEASLRAVADLSEVLPMNEELEFL 87 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 I ++ G QV +SR +EV +I+ +++++ Sbjct: 88 IIR-DQDAEG-QVTISRK---------QLEVKQIWEKLLEMQ 118 >gi|332319827|sp|P0CW58|RADA_METMI RecName: Full=DNA repair and recombination protein radA gi|16588837|gb|AAL26913.1|AF322003_1 RadA [Methanococcus maripaludis] Length = 322 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTADKLIEGGYLDFMKIATATIGELTDIEGISE 46 >gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB8] gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8] Length = 713 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 22/114 (19%) Query: 92 DIGGVVSDP----LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 ++G V + A AK+ I REA KVGEI GTV Sbjct: 593 ELGVEVDIEEDGTVRIYSSDLQAALEAKKRIEDLTREA-----------KVGEIYEGTVT 641 Query: 148 RVEY-GNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIYDVRREQR 194 R+ G I ++G++ + ++L+ GD +K ++ + + Sbjct: 642 RITPFGAFISLFPGTEGLLHISQIAPGRVARVEDHLKVGDVIKVKVHRIDERGK 695 >gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453] gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453] Length = 405 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLR 177 E+ + + E +D G+++ GTV+R+ VD+G DG++ E + L Sbjct: 186 ESNKQKVMSELQD--GQVLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVEKPADVLS 243 Query: 178 PGDRVKSYIYDVRREQRGPQVLLS 201 GD+V+ + V E+ ++ LS Sbjct: 244 EGDQVRVKVLKVDPEKG--KISLS 265 >gi|284165509|ref|YP_003403788.1| ribosomal protein L32e [Haloterrigena turkmenica DSM 5511] gi|284015164|gb|ADB61115.1| Ribosomal protein L32e [Haloterrigena turkmenica DSM 5511] Length = 236 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +E Q V A L GF +E++ ++A EG A I+ Sbjct: 2 ADEEPQELEDISGVGASKADALRDAGFESIEDIKEADQDDLAEAEGIGNALAARIKA 58 >gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter smithii DSM 2374] gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter smithii DSM 2374] Length = 314 Score = 38.9 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +V E A L GFAD+ LA E++ E A ++ AR+ Sbjct: 7 LEDLPSVGEKTAEKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARK 60 >gi|45187548|ref|NP_983771.1| ADL325Cp [Ashbya gossypii ATCC 10895] gi|74694654|sp|Q75B95|BRR1_ASHGO RecName: Full=Pre-mRNA-splicing factor BRR1 gi|44982286|gb|AAS51595.1| ADL325Cp [Ashbya gossypii ATCC 10895] Length = 322 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 23/142 (16%) Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390 AS L I+I ++E+ + R + + + ++DE+I+ F V+E A Sbjct: 50 ASNLRKRKIEISYDDEEVVKRPSEGEKAIEL---PFDMDEVISW------FDQVKEDA-- 98 Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ------KKIRELGVSEELCSIPGID 444 +SE + EG+DEET + R+Y+ + + K + + ++ +D Sbjct: 99 -LSEREAFEGYDEETLNTLLVGIRDYISRMSSRDESTNNLIKLLEGVQPVVTNEALE-LD 156 Query: 445 SKIKVA----LGENGIKTMEDL 462 K LG T+++L Sbjct: 157 EKWAAKLVARLGRRKFTTLDNL 178 >gi|332374336|gb|AEE62309.1| unknown [Dendroctonus ponderosae] Length = 338 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 + ++ + ++ ++ L G+ VE +A + SI+G E+ A Sbjct: 12 KEDDMEECGPQPIARLEGNGINAGDIKKLEEAGYHTVESVAFAPKKYLLSIKGISEQKAD 71 Query: 408 EI 409 +I Sbjct: 72 KI 73 >gi|323484701|ref|ZP_08090060.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum WAL-14163] gi|323691768|ref|ZP_08106025.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum WAL-14673] gi|323401938|gb|EGA94277.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum WAL-14163] gi|323504134|gb|EGB19939.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum WAL-14673] Length = 379 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 19/150 (12%) Query: 69 VEEVENYTCQIS---LKVARDRDPSIDIGGVVSD---PLPPMDFGRVAVQSAKQVIIQKV 122 V EVE I + D+D S G + P + KQ+++ K Sbjct: 125 VVEVEGTRVFIPASMVSDTYDKDLSKYAGQEIEFVVTEFNPNGRRSRIIGDRKQLLVAK- 183 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENL 176 + A + + + VG+ + G VK V +DLG +DG++ E ++ Sbjct: 184 KAAMQKELFEKIA--VGQTVEGVVKNVTDFGAFIDLGGADGLLHISEMSWGRVENPKKVF 241 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 + GD+V + I D+ G +V LS P+ Sbjct: 242 KVGDKVTALIKDI----NGEKVALSLKFPE 267 >gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 178 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 108 RVAVQSAKQVIIQKVREAERDRQY------LEFKDKVGEIISGTVKRVEYGNVIVDLGNS 161 VAV + ++ K+RE + + + FK GEII G V +V V + G Sbjct: 49 YVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPI 108 Query: 162 DGVIRRDETISRENLRPGDR 181 + V + PG+ Sbjct: 109 ENVYLSYTKMPDYKYVPGEN 128 >gi|228470785|ref|ZP_04055633.1| 30S ribosomal protein S1 [Porphyromonas uenonis 60-3] gi|228307458|gb|EEK16463.1| 30S ribosomal protein S1 [Porphyromonas uenonis 60-3] Length = 598 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 123 REAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 ER+ Y + K E++ G V + V+V++G S G+I +E ++L+ G Sbjct: 30 MRKEREAIYDKTLTTIKENEVVMGKVMSISKREVLVNIGYKSAGIISANEFNYNKDLKVG 89 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D V+ + +E R Q+ LS Sbjct: 90 DEVEVLVES--KEDRHGQLQLS 109 >gi|145591606|ref|YP_001153608.1| Fis family transcriptional regulator [Pyrobaculum arsenaticum DSM 13514] gi|145283374|gb|ABP50956.1| transcriptional regulator, Fis family [Pyrobaculum arsenaticum DSM 13514] Length = 312 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 ++L S+ G+ K L E G+ ++E LA +V++L+ ++ L+ G Sbjct: 9 DDLSSLEGVGPKTLERLRELGVVSVEHLAEFTVEELVEAGVEYDRAVKIIQQALAKAG 66 >gi|121701915|ref|XP_001269222.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1] gi|119397365|gb|EAW07796.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1] Length = 347 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L V G+ VE +A + I+G E+ A +I A Sbjct: 38 IKLFVDAGYHTVESIAYTPRRLLEQIKGISEQKATKILVEA 78 >gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola M1.001] Length = 1772 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 134 FKD-KVGEIISGTVKRVE--YGNVIVDLG-NSDGVIRRDETI--SREN----LRPGDRVK 183 +KD K G+I++G V++VE ++VD N G+ R E E+ GD VK Sbjct: 1282 YKDMKEGQIVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVEDARRLYSEGDVVK 1341 Query: 184 SYIYDVRREQR 194 + + V E+R Sbjct: 1342 AKVLSVDDEKR 1352 >gi|292670964|ref|ZP_06604390.1| 30S ribosomal protein S1 [Selenomonas noxia ATCC 43541] gi|292647585|gb|EFF65557.1| 30S ribosomal protein S1 [Selenomonas noxia ATCC 43541] Length = 384 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L +D S+ + V + +D + + +++ ++++ R + + + Sbjct: 129 PASQMELHFVKDL--SVYVDQTVEAEIIEVDVQKRRLVLSRRKLLERDRAEKEEAVFSAI 186 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + +++ GTVKR+ +D+G DG+ + E L G + Y+ Sbjct: 187 EP--EQVVRGTVKRLVDYGAFIDIGGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKS 244 Query: 189 VRREQRGPQVLL 200 V RE + + + Sbjct: 245 VDREAKRISLSV 256 >gi|319946257|ref|ZP_08020497.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis ATCC 700641] gi|319747639|gb|EFV99892.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis ATCC 700641] Length = 783 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 36/185 (19%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINP------------ETGDISLFRLLEVVEEVENYT 76 ++ +++ +A ++ + + I V I +T I + ++ V+ + Sbjct: 565 EILTEALAQAKKARFEILDVIEVTIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETI 624 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + D + + + A+ AK++I VREA Sbjct: 625 DKIIAETGVKIDIDEEGN------VSIYSSDQDAINRAKEIIAGLVREA----------- 667 Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRP------GDRVKSYIYDV 189 KV E+ V R+E V+L +D ++ E R GD V + + Sbjct: 668 KVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDLVEIGDEVDVKVIKI 727 Query: 190 RREQR 194 + R Sbjct: 728 DEKGR 732 >gi|261415158|ref|YP_003248841.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371614|gb|ACX74359.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 590 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLP--PMDFGRVAVQS 113 TG IS EV+ +V NY + + A +D +++G + + + GR+ + Sbjct: 48 TGKISQVNDQEVLVDV-NYKSEGVIDRAEFKDTDSLELGSEIEVFVEKLEDEDGRLILSK 106 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE---- 169 K ++ DR + F++ E++ GT+ + G V+VDL D + + Sbjct: 107 QKADFVR-----VWDRIHAAFEN--NEVVRGTLTKRIKGGVVVDLFGIDAFLPGSQIDLR 159 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 I N G + V + +R +++SR Sbjct: 160 QIPDINALIGQEFDLKVIKVNKARRN--IVVSR 190 >gi|227487607|ref|ZP_03917923.1| oxidoreductase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092425|gb|EEI27737.1| oxidoreductase [Corynebacterium glucuronolyticum ATCC 51867] Length = 964 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 20/135 (14%) Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVA 378 L IG G + I E E + T M +++ LV Sbjct: 273 LMIGAEGI------------LGFIAEAEIATVAHPKMAAVTWVMMPKMDLAANYVDRLVK 320 Query: 379 EGFADVEELACVKISE-IASIEG-------FDEETAVEIQGRAREYLEGIDITLQKKIRE 430 G VE LA + E + S G EE A + A + E + +Q Sbjct: 321 AGAESVELLASPAMREAVGSFPGAHEDWLNLPEEMAALLLEVAADDEESLQAKMQAARDA 380 Query: 431 LGVSEELCSIPGIDS 445 L ++ L + + Sbjct: 381 LQDADLLQPLDFMRE 395 >gi|212223151|ref|YP_002306387.1| RecJ-like exonuclease [Thermococcus onnurineus NA1] gi|212008108|gb|ACJ15490.1| RecJ-like exonuclease [Thermococcus onnurineus NA1] Length = 741 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 +G + GT+ RVE V V L + G+I+R + + + PG + + DVR ++R Sbjct: 132 IGNVYKGTIDRVERFGVFVKLNPHVTGLIKRKDLLGGRDYVPGQEILVQVLDVRPDKR 189 >gi|189485112|ref|YP_001956053.1| DNA-directed RNA polymerase alpha chain [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287071|dbj|BAG13592.1| DNA-directed RNA polymerase alpha chain [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 323 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 34/82 (41%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E+ +++ + + +++ L + G VE+L +K ++ + + Sbjct: 234 TEEVSADKEEQDGILGKPVSIMDISVKTLKSLKSAGIETVEDLVKIKEEDLLNFNNLSKR 293 Query: 405 TAVEIQGRAREYLEGIDITLQK 426 + EI+ R +E + + ++ Sbjct: 294 SCEEIKNRVKELGLSLGMKIED 315 >gi|113954120|ref|YP_731196.1| ribosomal protein S1 [Synechococcus sp. CC9311] gi|113881471|gb|ABI46429.1| Ribosomal protein S1 [Synechococcus sp. CC9311] Length = 401 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDE------TISRENLRPGDRVKSYIYD 188 GE+++GTV +E V VD+ G + G + ++E T +E G ++ + Sbjct: 129 GEVVTGTVIGMESDGVYVDIGGKAPGFMPKNECGLGVITNLKERFPKGLEIEVLVTR 185 >gi|145614388|ref|XP_362387.2| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15] gi|145021318|gb|EDK05447.1| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15] Length = 780 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L++ G+ VE +A + I+G E+ A +I A + Sbjct: 469 IQLVMEGGYNTVESVAYTPRRMLEQIKGISEQKAGKILAEASK 511 >gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411] gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411] Length = 695 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 12/143 (8%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI-----QGRAREYLEGIDI 422 V A L F VE++A E+A I+G E A I R ++ Sbjct: 522 VGPTAAKALAKH-FESVEDIASASAEEMAGIDGVAETIAESISDWFTVDWHRRIVDRWAA 580 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-GGNI 481 + RE G + G+DS + L ++ED + + + K G++ Sbjct: 581 AGVRMRREAGNVPG--AADGVDSALLEGLTIVVTGSLEDFDRTAAKEAIEARGGKAAGSV 638 Query: 482 EKFDGFL---SSLGTPKDQVESM 501 K FL G+ + E + Sbjct: 639 SKKTDFLVAGEKAGSKLKKAEDL 661 >gi|302328188|gb|ADL27389.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 590 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLP--PMDFGRVAVQS 113 TG IS EV+ +V NY + + A +D +++G + + + GR+ + Sbjct: 48 TGKISQVNDQEVLVDV-NYKSEGVIDRAEFKDTDSLELGSEIEVFVEKLEDEDGRLILSK 106 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE---- 169 K ++ DR + F++ E++ GT+ + G V+VDL D + + Sbjct: 107 QKADFVR-----VWDRIHAAFEN--NEVVRGTLTKRIKGGVVVDLFGIDAFLPGSQIDLR 159 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 I N G + V + +R +++SR Sbjct: 160 QIPDINALIGQEFDLKVIKVNKARRN--IVVSR 190 >gi|256028050|ref|ZP_05441884.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Fusobacterium sp. D11] gi|289765993|ref|ZP_06525371.1| LytB protein [Fusobacterium sp. D11] gi|289717548|gb|EFD81560.1| LytB protein [Fusobacterium sp. D11] Length = 827 Score = 38.9 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 + P +IG V + +D ++ + + +R++ + E+K VG + Sbjct: 686 EETPKFEIGNEVELKIIELDLNNKKIKGSLKA----LRKSPWEHVLEEYK--VGTTVEKK 739 Query: 146 VKRV-EYGNVIVDLGNSDGVIR----RDETIS--RENLRPGDRVKSYIYDVRREQRGPQV 198 +K V ++G I + DG I E I R+ + GD VK+ + +V ++ + ++ Sbjct: 740 IKTVADFGLFIELIKGIDGFIPTQFASKEFIKNIRDKFKEGDIVKAQVVEVNKDTQKIKL 799 >gi|329906685|ref|ZP_08274481.1| SSU ribosomal protein S1p [Oxalobacteraceae bacterium IMCC9480] gi|327547180|gb|EGF32041.1| SSU ribosomal protein S1p [Oxalobacteraceae bacterium IMCC9480] Length = 560 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 9/69 (13%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISREN-------LRPGDRVKSYIYDV 189 G +++G VK VE ++ L +G +R E ISR+ L+ GD V++ + ++ Sbjct: 449 KGSLVTGVVKMVEPKGAVIQLSEEVEGYLRASE-ISRDRVEDAGTHLKVGDTVEAMVLNI 507 Query: 190 RREQRGPQV 198 R+ RG Q+ Sbjct: 508 DRKARGIQL 516 Score = 37.7 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + +D R V +++ +I+ ER + K G +++G VK + Sbjct: 148 GKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERQKLMETLK--EGTVVTGIVKNITDYG 205 Query: 154 VIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ R E L G + + + +E+ Sbjct: 206 AFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKYDQEKN 252 >gi|302874418|ref|YP_003843051.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans 743B] gi|307690976|ref|ZP_07633422.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans 743B] gi|302577275|gb|ADL51287.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B] Length = 308 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLGN-SDGVIRRD----ETIS--RENLRPGDRVKSYIYDVR 190 G+++ G V V +V+V +G+ DG+I ++ + +E GD +K+Y+ +V Sbjct: 23 KGQMVEGEVVSVTEEDVLVSIGHMKDGIIPKEKATFDMSKSLKEQFNLGDIIKAYV-EVE 81 Query: 191 REQRGPQVLLS 201 + G ++LLS Sbjct: 82 DDGEG-KILLS 91 >gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] Length = 664 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%) Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFAD-VEEL--ACVKISEIASIEG 400 EE DS +K + ++ M + + I GF +E++ V EI IEG Sbjct: 423 EECDSKKIEKLIHFASREAMNIDGLGDKIIEQFYNLGFVTCIEDIYHLGVHEKEIMDIEG 482 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 F +++ ++ E +E + +K+ I GI +K+ L Sbjct: 483 FGKKSMDKLL----EAIENSKVNSLEKLLFG------LGIKGIGAKMADTLA 524 >gi|254166887|ref|ZP_04873741.1| Anticodon-binding domain family [Aciduliprofundum boonei T469] gi|289596522|ref|YP_003483218.1| Protein of unknown function DUF835 [Aciduliprofundum boonei T469] gi|197624497|gb|EDY37058.1| Anticodon-binding domain family [Aciduliprofundum boonei T469] gi|289534309|gb|ADD08656.1| Protein of unknown function DUF835 [Aciduliprofundum boonei T469] Length = 1007 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + F +D+ A LL G+ + EL + +IA G + E+ Sbjct: 762 VIKAFKSIPGIDDYRAELLFKMGYGSIYELMEAEPEQIAEATGMPLKLVNELID 815 >gi|171680227|ref|XP_001905059.1| hypothetical protein [Podospora anserina S mat+] gi|170939740|emb|CAP64966.1| unnamed protein product [Podospora anserina S mat+] Length = 348 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +++ G+ VE +A + I+G E+ A +I A + Sbjct: 39 IQMIIEGGYNTVESVAYTPRRVLEQIKGISEQKAQKILTEASK 81 >gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus prevotii ACS-065-V-Col13] Length = 687 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 81/217 (37%), Gaps = 29/217 (13%) Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83 ++ ++ + DS++K + I V+ + +F ++ + +++ + Sbjct: 279 KEEFMNSLEDSLKKVYPKEIVKGTVIDVKDD------EIFVDIQFRADGIIKLDEMTEEE 332 Query: 84 ARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV--GEI 141 +D S +IG + + +D G + R E R + + +K E+ Sbjct: 333 RKDPKSSFNIGDEIDVYVIKLDDGEG-------NVALSTRRVEGMRVWKDLAEKAENDEL 385 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY-----IYDVRREQRGP 196 + G V G + V++ +G + + + K + V ++R Sbjct: 386 VHGEVTGFNKGGLTVNVDGVNGFVPASQIA---TYFVKNFKKFVGEDWDLKIVSIDERKN 442 Query: 197 QVLLSRTH--PQFMVKLFHMEVPEIYNGIVQVKAVSR 231 +++LSR + +L+ E+ G V V+R Sbjct: 443 RLVLSRKDVVEGQLDELWD----ELEEGQVVTGKVAR 475 >gi|229597842|pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex With Amppnp gi|229597843|pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex With Amppnp And Potassium Ions gi|229597844|pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex With Amppnp And Ammonium Ions Length = 322 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTADKLIEGGYLDFMKIATATIGELTDIEGISE 46 >gi|119495909|ref|XP_001264730.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181] gi|119412892|gb|EAW22833.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181] Length = 348 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L V G+ VE +A + I+G E+ A +I A Sbjct: 39 IKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKILVEA 79 >gi|70995295|ref|XP_752407.1| DNA repair protein RAD51 [Aspergillus fumigatus Af293] gi|66850042|gb|EAL90369.1| DNA repair protein RAD51, putative [Aspergillus fumigatus Af293] gi|159131162|gb|EDP56275.1| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163] Length = 348 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L V G+ VE +A + I+G E+ A +I A Sbjct: 39 IKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKILVEA 79 >gi|187932428|ref|YP_001885998.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum B str. Eklund 17B] gi|187720581|gb|ACD21802.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum B str. Eklund 17B] Length = 635 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 15/165 (9%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI +K +D+ I+ V + V ++++V+++ ++E E ++ + Sbjct: 418 PASQIDIKFTKDKSKYINQILEVKL-INYSAEEHKKVIASRRVLLEVLKETEEEKIWESL 476 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 VG+++ VKR +D+ DG++ + + L+ G+ ++ I Sbjct: 477 N--VGDVLEAEVKRFTNFGAFLDVNGIDGLLHLSQISWNHVKNIEDILKKGEMIEVKIIA 534 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY-NGIVQVKAVSRD 232 + +E + ++ LSR + + K + V E Y G + + V R Sbjct: 535 LDKENK--KLSLSRK--ELLPKPWEN-VKEKYPEGSIVLGKVVRI 574 >gi|33152424|ref|NP_873777.1| 30S ribosomal protein S1 [Haemophilus ducreyi 35000HP] gi|33148647|gb|AAP96166.1| 30S ribosomal protein S1 [Haemophilus ducreyi 35000HP] Length = 555 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI--SRE-NLRPGDRVKSYIYDVRRE 192 ++G+++ GTV ++ G VIVD G S+ I +E I E ++ GD+V + V Sbjct: 19 RLGDVVKGTVVAIQKGYVIVDTGFKSESSIPAEEFINAQGELEVQIGDQVDVVLKAVEDG 78 Query: 193 QRGPQVLLSR 202 + ++SR Sbjct: 79 FG--ETVVSR 86 >gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii DSM 20548] gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii DSM 20548] Length = 686 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 82/219 (37%), Gaps = 33/219 (15%) Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83 ++ ++ + DS++K + I V+ + +F ++ + +++ + Sbjct: 279 KEEFMNSLEDSLKKIYPKEIVKGTVIDVKDD------EVFVDIQFRADGIIKLDEMTEEE 332 Query: 84 ARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV--GEI 141 A+D S ++G + + +D G + R E + + + +K E+ Sbjct: 333 AKDPKNSFNVGDEIDVFVIKLDDGEG-------NVSLSTRRVEGMKVWKDLAEKAENDEL 385 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY-----IYDVRREQRGP 196 + G V G + V++ +G + + + K + + ++R Sbjct: 386 VHGVVSGFNKGGLTVNVEGINGFVPASQIA---TYFVKNFKKFVGEEWDLKIISIDERKN 442 Query: 197 QVLLSRTHPQFMVKLFHMEV----PEIYNGIVQVKAVSR 231 +++LSR ++ E+ E+ G V V+R Sbjct: 443 RLVLSR------KEVVEDELDGLWEELEEGQVVTGKVAR 475 >gi|225453436|ref|XP_002272998.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 239 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 45/147 (30%) Query: 219 IYNGIVQVKAVSRDPGSRAK-------LAVFSSDSSIDPVGACVGMRGSRVQAVVTEL-- 269 I + +V R P RAK + V S +G +G GSR+Q + E Sbjct: 37 IASATGEVADDHRSPKRRAKNQDVLFRIVVPSRQ-----IGKVIGKEGSRIQKIREETKA 91 Query: 270 ----------RDEKIDIVVWSPDSATFVI---NALRPAIVTKVVLDED------------ 304 +E++ I++ S DS + NAL V ++L ED Sbjct: 92 TIKIADAIARHEERV-IIISSKDSENVISDAENALL--QVASLILKEDDSNTDALKVGVG 148 Query: 305 ---VGRIEVIVPKEQLSLAIGRRGQNV 328 I +++ Q IG GQN+ Sbjct: 149 HVVANAIRLLIAGSQAGCLIGMSGQNI 175 >gi|289579915|ref|YP_003478381.1| ribosomal protein L32e [Natrialba magadii ATCC 43099] gi|289529468|gb|ADD03819.1| Ribosomal protein L32e [Natrialba magadii ATCC 43099] Length = 240 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 21/60 (35%) Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 D ++ Q V A L GF +E++ E+A +G A I+ Sbjct: 1 MADEDDSPQELEDISGVGASKADALREAGFESIEDVKEADQDELAEADGVGNALAARIKA 60 >gi|317154744|ref|YP_004122792.1| 30S ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2] gi|316944995|gb|ADU64046.1| ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2] Length = 623 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 7/91 (7%) Query: 117 VIIQKVREAERDRQYLEFKDK-VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE 174 + +A + +F D G I+SG + +++ V+VD+ S+G I E + Sbjct: 12 EMEMNFADALDEYLNSDFGDLDEGTIVSGEIVKIDKDYVLVDVNFKSEGQIPASEFTDSD 71 Query: 175 ---NLRPGDRVKSYIYDVRREQRGPQVLLSR 202 N++ G+RV ++ + E G + LSR Sbjct: 72 GTVNVQIGERVDVFVAR-KNEAEGT-IYLSR 100 >gi|237756866|ref|ZP_04585345.1| ribosomal protein S01 [Sulfurihydrogenibium yellowstonense SS-5] gi|237690975|gb|EEP60104.1| ribosomal protein S01 [Sulfurihydrogenibium yellowstonense SS-5] Length = 566 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE------NLRPGDRVKSY 185 +F VG+++ VK + VIVD+ +G I E + NL+ GD+VK+ Sbjct: 260 DKFDKDVGDVVEAAVKEINKFGVIVDVDGVEGFIYNREISHFDYMKAKKNLKAGDKVKAK 319 Query: 186 IYDVRREQRGPQV 198 I ++ +E R ++ Sbjct: 320 IIELDKENRKLKL 332 Score = 38.5 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 11/90 (12%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------I 171 ++++ E E + ++K VG+++ G +K++ IVDL N +G I E I Sbjct: 418 MKQLLEEEWNEFISKYK--VGDVVKGKIKKLIEKGAIVDLRENIEGFIPVSEIALERINI 475 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 + L+ V++ I + E + ++ LS Sbjct: 476 PSDKLKLHQEVEAKIIKIDSENK--KITLS 503 >gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7] gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7] Length = 714 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 15/125 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + + I+ + G V + Q I K E K +VGE+ G Sbjct: 578 KTINEIIEQSD--GVKIDIEQDGTVVIYHYDQAAINKAVELIEKIVK---KAQVGEVYDG 632 Query: 145 TVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQ 197 V RVE ++L +DG + + E ++ GD +K + V + + Sbjct: 633 KVVRVEDNYAFINLFDGTDGFLHISDYAYERTKKMGEVIKLGDIIKVKVTKVDDKGK--- 689 Query: 198 VLLSR 202 V +SR Sbjct: 690 VNVSR 694 >gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434] gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434] Length = 483 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVL--QK 93 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + ++LLS+ Q+ +E + +G+V Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERVKEEDGVVT 127 >gi|126731017|ref|ZP_01746825.1| 30S ribosomal protein S1 [Sagittula stellata E-37] gi|126708319|gb|EBA07377.1| 30S ribosomal protein S1 [Sagittula stellata E-37] Length = 554 Score = 38.9 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 76/197 (38%), Gaps = 27/197 (13%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADS---IQKAARSLYGTMSDIRVE---INPETGDISL 62 L+ A+ E I R+ ++ ++ ++KA D RVE G ++ Sbjct: 70 FLRAAENARGEAVISRE--MARREEAWDRLEKAY------ADDARVEGAIFGRVKGGFTV 121 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V Q+ ++ RD P + + + MD R + +++ I+++ Sbjct: 122 DLGGAVA---FLPGSQVDVRPVRDAGPLMGLKQP--FQILKMDRRRGNIVVSRRAILEES 176 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENL 176 R +R + + G+ + G VK + VDLG DG++ + E L Sbjct: 177 RAEQRAEVIGKL--QEGDSVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEIL 234 Query: 177 RPGDRVKSYIYDVRREQ 193 G+ VK + + +E Sbjct: 235 SIGETVKVQVIKINKET 251 >gi|328948657|ref|YP_004365994.1| Cytidylate kinase [Treponema succinifaciens DSM 2489] gi|328448981|gb|AEB14697.1| Cytidylate kinase [Treponema succinifaciens DSM 2489] Length = 781 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 14/135 (10%) Query: 79 ISLKVARDRDPSIDIGGV---VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 IS A+ + + GV + R V + ++ + +++ E RD+ + Sbjct: 355 ISQADAQKVEKEDKLIGVKSKFYVERLYSNGKRNVVVNRRKYLEEQINE-NRDKFFE--T 411 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDV 189 K+G+ + G VK +DLG DG++ ++ ++ ++ G ++ + + Sbjct: 412 VKIGDTVKGVVKSFTSFGAFIDLGGFDGLLHINDMSWGHVTRPKDFVKKGQEIE--LKVI 469 Query: 190 RREQRGPQVLLSRTH 204 R + G ++ LS H Sbjct: 470 RLDPEGKRINLSLKH 484 >gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM 20601] gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM 20601] Length = 722 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 25/120 (20%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 I+ G V + + A+ Q+I VRE E VGEI +G V+R+ Sbjct: 591 DIEQDGTVYVASQDEEMNKKAI----QIIEDIVREVE-----------VGEIYTGKVRRI 635 Query: 150 EYGNVIVDL-----GNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 E V+L G E + + + L+ GD VK + +V + R V LSR Sbjct: 636 EKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVKVKVIEVDHQGR---VNLSR 692 >gi|298713772|emb|CBJ27144.1| DNA repair and recombination protein Rad51A [Ectocarpus siliculosus] Length = 343 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E + F+ T+ +A ++ L G+ VE ++ I ++ ++G E+ Sbjct: 18 EAAEEVVASFHHITEL--EAHGINRNDVQRLSEAGYCTVESISHCTIRKLVEVKGISEQK 75 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 A +++ + + I + L ++L ++ ++ L E GI+T Sbjct: 76 AAKLKETV---YKLVPIGFTTASQHLLQRQDLITLTTGSKEL-DKLLEGGIET 124 >gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 1819 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 26/136 (19%) Query: 81 LKVA--RDRDPSIDIGGVVSDPLPPMDFGRVAVQ-SAKQVIIQKVREAERDRQYL---EF 134 L A ++ + +V + +D VQ + KQ + D Y + Sbjct: 1262 LSDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSAL--------DPNYKPPLQL 1313 Query: 135 KD-KVGEIISGTVKRVEYGNVIVDLGNS---DGVIRRDETI------SRENLRPGDRVKS 184 D K G+I++G V++VE V + + G+ R E +R+ GD VK+ Sbjct: 1314 SDLKQGQIVTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKA 1373 Query: 185 YIYDVRREQRGPQVLL 200 I V E+ Q+ L Sbjct: 1374 KILKVDTEK--AQISL 1387 >gi|299133337|ref|ZP_07026532.1| ribosomal protein S1 [Afipia sp. 1NLS2] gi|298593474|gb|EFI53674.1| ribosomal protein S1 [Afipia sp. 1NLS2] Length = 566 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA---------------ARSLYGTMSDIR-VEINPETGDISLFRLLEV 68 +V L + +++ +A + + V N G ++ V Sbjct: 79 EVFLDRIENALGEAVLSRDKARREESWGKLEKAFNANEKVHGVIFNQVKGGFTVDLDGAV 138 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P ++ + MD R + +++ ++++ R +R Sbjct: 139 A---FLPRSQVDIRPIRDVAPLMNNPQP--FQILKMDRRRGNIVVSRRTVLEETRAEQRQ 193 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G++I G VK + VDLG DG++ + E L G V Sbjct: 194 ELVQNLE--EGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTV 251 Query: 183 KSYIYDVRREQ 193 K I + E Sbjct: 252 KVKIIKINHET 262 >gi|221236638|ref|YP_002519075.1| 30S ribosomal protein S1 [Caulobacter crescentus NA1000] gi|220965811|gb|ACL97167.1| SSU ribosomal protein S1P [Caulobacter crescentus NA1000] Length = 569 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + + GEI G VK + VDLG DG++ Sbjct: 173 RGNIVVSRRAILEEARAEQRTELVSQL--QEGEIREGVVKNITDYGAFVDLGGIDGLLHV 230 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD VK I + + Sbjct: 231 TDMSWKRVNHPSQVLAVGDTVKVQIVKINPDT 262 >gi|242280849|ref|YP_002992978.1| 30S ribosomal protein S1 [Desulfovibrio salexigens DSM 2638] gi|242123743|gb|ACS81439.1| ribosomal protein S1 [Desulfovibrio salexigens DSM 2638] Length = 581 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVKSYIYDVRREQ 193 G I+SG V +V+ V++D+ S+G I E + + + GD+V ++ + + E Sbjct: 32 EGSIVSGEVVKVDKDFVLIDVNFKSEGQIAVSEFLDADGNMTVAVGDKVDVFVAN-KNEN 90 Query: 194 RGPQVLLSRTHPQFMVKLFH--MEVPEIYNGIVQVKAVSRDPG 234 G + LSR + M +LF EV E G+V+ + + R G Sbjct: 91 EGT-IHLSRDKAKRM-QLFDKLEEVQE-KEGVVEGRIIRRIKG 130 >gi|169346867|ref|ZP_02865815.1| alpha-N-acetylglucosaminidase family protein [Clostridium perfringens C str. JGS1495] gi|169296926|gb|EDS79050.1| alpha-N-acetylglucosaminidase family protein [Clostridium perfringens C str. JGS1495] Length = 2104 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 26/154 (16%) Query: 377 VAEGF---ADVEELACVKISEIASIEGF-------DEETAVEIQGRAREYLEGID----- 421 EGF +EE+ + + +I+ F D+ EI LE + Sbjct: 1833 AEEGFESSTSLEEIRNITKTLKEAIDTFVESVNVIDKAQLEEIISSIESKLENAEGVYIP 1892 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV----DDLLGWSENK 477 +++ + L ++E+ + G + + + + E S D+L E Sbjct: 1893 NAIEELKKALDKAKEVLNNEGANEEDINK-AISDLTEAEANFELSKVPNKDELNSEIERA 1951 Query: 478 GGNIEKFDGF--LSSLGTPKDQVESMIIHA-RYK 508 G +EK GF L + ++ I+ A R K Sbjct: 1952 YGVLEKLKGFDHLEGIKIKLEEA---ILEAERVK 1982 >gi|120436200|ref|YP_861886.1| 30S ribosomal protein S1 [Gramella forsetii KT0803] gi|117578350|emb|CAL66819.1| 30S ribosomal protein S1 [Gramella forsetii KT0803] Length = 620 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 7/136 (5%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLP---PMDFGRVAVQSAKQVIIQKVREAER 127 EV++ T + ++ D P +F + I K E Sbjct: 9 EVQDNTENVEVQDVAGMDSQSQPEQEKQQENPEKFLKEFNWHNYEEGIDPIDDKKLEEFE 68 Query: 128 DRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 F D E+++G V + + I+D+ S+GVI +E +L+ GD V+ Sbjct: 69 KLVAANFVDTLDDEVVTGKVINITDRDAIIDINAKSEGVISLNEFRYNPDLKEGDDVEVL 128 Query: 186 IYDVRREQRGPQVLLS 201 I DVR + G Q++LS Sbjct: 129 I-DVREDSTG-QLILS 142 >gi|16127817|ref|NP_422381.1| 30S ribosomal protein S1 [Caulobacter crescentus CB15] gi|13425331|gb|AAK25549.1| ribosomal protein S1 [Caulobacter crescentus CB15] Length = 565 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + + GEI G VK + VDLG DG++ Sbjct: 169 RGNIVVSRRAILEEARAEQRTELVSQL--QEGEIREGVVKNITDYGAFVDLGGIDGLLHV 226 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD VK I + + Sbjct: 227 TDMSWKRVNHPSQVLAVGDTVKVQIVKINPDT 258 >gi|45358785|ref|NP_988342.1| DNA repair and recombination protein RadA [Methanococcus maripaludis S2] gi|332319828|sp|P0CW59|RADA_METMP RecName: Full=DNA repair and recombination protein radA gi|45047651|emb|CAF30778.1| DNA repair and recombination protein radA [Methanococcus maripaludis S2] Length = 322 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTADKLIEGGYLDFMKIATATIGELTDIEGISE 46 >gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 401 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 39/192 (20%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + + +D + + + + +I++ RE + + VG+++ G V R+ Sbjct: 153 IGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLV--VGDVVEGRVSRLTNF 210 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 VD+G DG++ E + L+ G VK + + ++ + + +T P Sbjct: 211 GSFVDIGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270 Query: 207 FMVK---------LFHMEV---------PEIYNGIVQVKAVSRDP-------------GS 235 + + EV E+ +GI + VS G Sbjct: 271 PFEQATSSLNEGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQ 330 Query: 236 RAKLAVFSSDSS 247 + K+ V + D S Sbjct: 331 KVKVKVLNIDPS 342 >gi|317056439|ref|YP_004104906.1| hydroxymethylbutenyl pyrophosphate reductase [Ruminococcus albus 7] gi|315448708|gb|ADU22272.1| hydroxymethylbutenyl pyrophosphate reductase [Ruminococcus albus 7] Length = 656 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR---EAERDRQYLEFKDK--VGEIISG 144 D+ ++ + V KQ + VR E+ +F D VG + G Sbjct: 437 DFDLNDLLKQTVKFKILE---VNDVKQRAVGSVRAVAREEKAAAQSKFFDTASVGAEMEG 493 Query: 145 TVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 VK + V VDLG DG++RR + + + GD+V I D+ E + + Sbjct: 494 VVKSITDYGVFVDLGGVDGLVRRADLSWNRIKHPSDVVSIGDKVTVKIKDIDPETKKVSL 553 Query: 199 L 199 Sbjct: 554 T 554 >gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16] gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16] Length = 652 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 A N+ E + GF + + V +++ IEGF + + I R+ ++G+D+ Sbjct: 433 AENMGEETLSKIFNAGFTSIPAILNVTFNDLIKIEGFGDSISNIILENNRKIMQGVDLA 491 >gi|148594010|emb|CAL63574.1| ribosomal protein S1 [Sinorhizobium americanum] Length = 403 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQIIRINQET 134 >gi|167644076|ref|YP_001681739.1| 30S ribosomal protein S1 [Caulobacter sp. K31] gi|167346506|gb|ABZ69241.1| ribosomal protein S1 [Caulobacter sp. K31] Length = 569 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + + GEI G VK + VDLG DG++ Sbjct: 173 RGNIVVSRRAILEEARAEQRTELVSQL--QEGEIREGVVKNITDYGAFVDLGGIDGLLHV 230 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD VK I + + Sbjct: 231 TDMSWKRVNHPSQVLAVGDTVKVQIVKINPDT 262 >gi|150398644|ref|YP_001329111.1| 30S ribosomal protein S1 [Sinorhizobium medicae WSM419] gi|150030159|gb|ABR62276.1| ribosomal protein S1 [Sinorhizobium medicae WSM419] Length = 568 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|53712335|ref|YP_098327.1| 30S ribosomal protein S1 [Bacteroides fragilis YCH46] gi|60680506|ref|YP_210650.1| 30S ribosomal protein S1 [Bacteroides fragilis NCTC 9343] gi|253563628|ref|ZP_04841085.1| 30S ribosomal protein S1 [Bacteroides sp. 3_2_5] gi|255007845|ref|ZP_05279971.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12] gi|265762527|ref|ZP_06091095.1| ribosomal protein S1 [Bacteroides sp. 2_1_16] gi|313145551|ref|ZP_07807744.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12] gi|52215200|dbj|BAD47793.1| 30S ribosomal protein S1 [Bacteroides fragilis YCH46] gi|60491940|emb|CAH06700.1| putative 30S ribosomal protein S1 [Bacteroides fragilis NCTC 9343] gi|251947404|gb|EES87686.1| 30S ribosomal protein S1 [Bacteroides sp. 3_2_5] gi|263255135|gb|EEZ26481.1| ribosomal protein S1 [Bacteroides sp. 2_1_16] gi|301162043|emb|CBW21587.1| putative 30S ribosomal protein S1 [Bacteroides fragilis 638R] gi|313134318|gb|EFR51678.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12] Length = 597 Score = 38.9 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Query: 125 AERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 E ++ Y +KV E++ GTV + V+V++G SDG+I +E +L+ GD Sbjct: 30 EELEKAYDGTLNKVNDREVVDGTVIAMNKREVVVNIGYKSDGIIPLNEFRYNPDLKVGDT 89 Query: 182 VKSYIYDVRREQRGPQVLLS 201 V+ YI +E + Q++LS Sbjct: 90 VEVYIE--NQEDKKGQLVLS 107 >gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] Length = 718 Score = 38.5 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 15/125 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + + I+ + G V + Q I K E K +VGE+ G Sbjct: 578 KTINEIIEQSD--GVKIDIEQDGTVVIYHYDQAAINKAVELIEKIVK---KAQVGEVYDG 632 Query: 145 TVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQ 197 V RVE ++L +DG + + E ++ GD +K + V + + Sbjct: 633 KVVRVEDNYAFINLFDGTDGFLHISDYAYERTKKMGEVIKLGDIIKVKVTKVDDKGK--- 689 Query: 198 VLLSR 202 V +SR Sbjct: 690 VNVSR 694 >gi|10800126|gb|AAG23356.1|AF222928_1 SAMSN1 [Mus musculus] Length = 364 Score = 38.5 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%) Query: 339 IDIITEEEDS-------INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +D+I+EEE + +R+++ ++ Q F++ I++ E + LL+ G+ +++L +K Sbjct: 211 VDVISEEEAAPKKIKVPRSRRRENHQTIQEFLERIHLQEYTSTLLL-NGYETLDDLKDIK 269 Query: 392 ISEIASIEGFDEETAVEIQGRAREYL-EGIDITLQKKIRELGVSEELCS 439 S + + D E + A L E + +K+ L + ++ S Sbjct: 270 ESHLIELNIADPEDRARLLSAAESLLDEETTVEHEKESVPLSSNPDILS 318 >gi|14521089|ref|NP_126564.1| ski2-like helicase [Pyrococcus abyssi GE5] gi|18203529|sp|Q9V0A9|HELS_PYRAB RecName: Full=Putative ski2-type helicase gi|5458306|emb|CAB49795.1| DNA helicase [Pyrococcus abyssi GE5] Length = 715 Score = 38.5 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 M+ V A L GF D+E + K SE+ IEG + I Sbjct: 643 LMELPMVGRKRARALYNAGFKDLESIRNAKPSELLRIEGIGAKIVEGI 690 >gi|284031350|ref|YP_003381281.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] gi|283810643|gb|ADB32482.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] Length = 483 Score = 38.5 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 17/153 (11%) Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA--DVEELA 388 A+ L G ++ E ++ Q ++ +++DE L A G VE++ Sbjct: 71 AAYL-GTRFEVYRETSQAVMAQM---RALSPLVEPLSLDEAFVD-LAASGLRDLTVEDVE 125 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK----KIRELGVSEELCS----- 439 + A+I + + + I L K + G E + Sbjct: 126 AIAADLKAAIRSATGGLTASVGAGTSKLIAKIASDLDKPDGVVVVPPGTEAEFLAPMQVT 185 Query: 440 -IPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 IPG+ L G++T+ DL + D+L+ Sbjct: 186 VIPGVGPATAQRLSMAGVRTVADLQQLAEDELI 218 >gi|20067707|emb|CAD29095.1| chimeric DNA-directed DNA polymerase bf2-2 [synthetic construct] Length = 327 Score = 38.5 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337] gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337] Length = 484 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVL--QK 93 Query: 192 EQRGPQVLLS 201 E + ++LLS Sbjct: 94 EDKEGRLLLS 103 >gi|295691411|ref|YP_003595104.1| 30S ribosomal protein S1 [Caulobacter segnis ATCC 21756] gi|295433314|gb|ADG12486.1| ribosomal protein S1 [Caulobacter segnis ATCC 21756] Length = 569 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + + GEI G VK + VDLG DG++ Sbjct: 173 RGNIVVSRRAILEEARAEQRTELVSQL--QEGEIREGVVKNITDYGAFVDLGGIDGLLHV 230 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD VK I + + Sbjct: 231 TDMSWKRVNHPSQVLAVGDTVKVQIVKINPDT 262 >gi|222529318|ref|YP_002573200.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor bescii DSM 6725] gi|222456165|gb|ACM60427.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor bescii DSM 6725] Length = 663 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 GE+++G + +VE ++VD+G ++G+I +DE I + + G+ +++ + Sbjct: 305 GEVVNGRIIKVEEDYLLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGEVIEAVVIK 361 >gi|37778910|gb|AAO72729.1| Rad51 [Trypanosoma cruzi] Length = 371 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +++ + L+ GF VE +A I +++G E A +I Sbjct: 59 LESYGIASADIKKLMESGFYTVESVAYAPKKNILAVKGISETKADKIMA 107 >gi|15964008|ref|NP_384361.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021] gi|307319307|ref|ZP_07598736.1| ribosomal protein S1 [Sinorhizobium meliloti AK83] gi|7404449|sp|P14129|RS1_RHIME RecName: Full=30S ribosomal protein S1 gi|15073184|emb|CAC41692.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021] gi|306895143|gb|EFN25900.1| ribosomal protein S1 [Sinorhizobium meliloti AK83] Length = 568 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|71409616|ref|XP_807143.1| DNA repair protein RAD51 [Trypanosoma cruzi strain CL Brener] gi|71652370|ref|XP_814843.1| DNA repair protein RAD51 [Trypanosoma cruzi strain CL Brener] gi|70871080|gb|EAN85292.1| DNA repair protein RAD51, putative [Trypanosoma cruzi] gi|70879851|gb|EAN92992.1| DNA repair protein RAD51, putative [Trypanosoma cruzi] gi|322824450|gb|EFZ29854.1| DNA repair protein RAD51, putative [Trypanosoma cruzi] Length = 371 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +++ + L+ GF VE +A I +++G E A +I Sbjct: 59 LESYGIASADIKKLMESGFYTVESVAYAPKKNILAVKGISETKADKIMA 107 >gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [Ruminococcus sp. 18P13] Length = 661 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + + R AV S K V + ++A R + + +VG++ +G VK + VDLG Sbjct: 447 IEVNEQRRRAVGSIKAVAKAQ-KDAARAKFWE--TAEVGQVFTGEVKSLTSYGAFVDLGG 503 Query: 161 SDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 DG++ E E ++ GD ++ YI + E + Sbjct: 504 IDGMVHISELSWKRIKHPSEVVKVGDMLEVYIKALDPEANRISL 547 >gi|20067713|emb|CAD29142.1| chimeric DNA-directed DNA polymerase bf2-7 [synthetic construct] Length = 329 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1] gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1] Length = 408 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 16/134 (11%) Query: 75 YTCQISLK--------VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 QISL + ++ S +G + + +D R + +++V + RE Sbjct: 156 PASQISLSRRASMGSGESPEQRWSKMVGEEIDVCVIEVDRERRRLILSERVATPETRETL 215 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGD 180 ++R GEI +G V + V++ +DG++ E E L+ G Sbjct: 216 KERVIETLA--EGEIRTGRVTSLADFGAFVNISGADGLVHLSEISWDRIKHPSEVLQVGQ 273 Query: 181 RVKSYIYDVRREQR 194 VK + V RE+R Sbjct: 274 EVKVKVISVDREKR 287 >gi|255531084|ref|YP_003091456.1| RNA binding S1 domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344068|gb|ACU03394.1| RNA binding S1 domain protein [Pedobacter heparinus DSM 2366] Length = 644 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 GEIISGTV + +V++++G SDG++ E +L+ GD+V ++ Sbjct: 87 QGEIISGTVVSINNKDVVLNVGFKSDGLVSTSEFRDTPDLKVGDKVDVFVEAPEDANG-- 144 Query: 197 QVLLSR 202 Q++LSR Sbjct: 145 QLILSR 150 Score = 37.4 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D + +G + + ++ V + +++I+ E+++ Sbjct: 192 EAFLPGSQIDIKPIRDYD--VYVGKTMEFKVVKINHEFKNVVVSHKILIEDDLESQKVEI 249 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ GTVK + V +DLG DG++ + +E L +++ Sbjct: 250 VSKLE--KGQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWGRIEHPKEVLSLDEKINV 307 Query: 185 YIYDVRREQR 194 + D E++ Sbjct: 308 VVLDFDDEKK 317 >gi|126303417|ref|XP_001373104.1| PREDICTED: similar to beta-polymerase [Monodelphis domestica] Length = 335 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLDGVGAKIAEKI----DEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|27468083|ref|NP_764720.1| 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228] gi|27315628|gb|AAO04762.1|AE016747_259 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228] Length = 240 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 >gi|329934767|ref|ZP_08284808.1| branched-chain amino acid aminotransferase [Streptomyces griseoaurantiacus M045] gi|329305589|gb|EGG49445.1| branched-chain amino acid aminotransferase [Streptomyces griseoaurantiacus M045] Length = 333 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 V+ +L + GI V L + + T D D+L+G E Sbjct: 236 VTADL--LEGITRDTAVTLAADLLDTPTDFRDLGRDELMGADEV 277 >gi|320161288|ref|YP_004174512.1| hypothetical protein ANT_18860 [Anaerolinea thermophila UNI-1] gi|319995141|dbj|BAJ63912.1| hypothetical protein ANT_18860 [Anaerolinea thermophila UNI-1] Length = 134 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 27/126 (21%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKI-----SEIASIEGFDEETAVEIQGRAREY 416 + + E+ A L A G + VE+L ++A G ++ ++ RA Sbjct: 4 LVDIEGIGEVYAEKLKAAGISSVEKLLEAGSTPKGREDLAKQTGISKDLILKWVNRA--- 60 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 +L + GI S+ L G+ T+ +LA + + L E Sbjct: 61 -------------------DLYRVKGIGSEYSDLLEAAGVDTVVELAQRNPEALYKKLEE 101 Query: 477 KGGNIE 482 + Sbjct: 102 VNAEKK 107 >gi|148594060|emb|CAL63599.1| ribosomal protein S1 [Sinorhizobium kostiense] gi|148594062|emb|CAL63600.1| ribosomal protein S1 [Sinorhizobium kostiense] gi|148594068|emb|CAL63603.1| ribosomal protein S1 [Sinorhizobium kostiense] Length = 403 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQIIRINQET 134 >gi|74027055|gb|AAZ94621.1| Rad51 [Trypanosoma cruzi] Length = 371 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +++ + L+ GF VE +A I +++G E A +I Sbjct: 59 LESYGIASADIKKLMESGFYTVESVAYAPKKNILAVKGISETKADKIMA 107 >gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS00] Length = 698 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|322372151|ref|ZP_08046692.1| 50S ribosomal protein L32e [Haladaptatus paucihalophilus DX253] gi|320548160|gb|EFW89833.1| 50S ribosomal protein L32e [Haladaptatus paucihalophilus DX253] Length = 234 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + V E A L G+ VE++ +++ ++G A I+ Sbjct: 1 MADEPEGIEDISGVGESKAESLREAGYESVEDIKAASQDDLSEVDGIGNALAARIKA 57 >gi|307306420|ref|ZP_07586164.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C] gi|306902262|gb|EFN32859.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C] Length = 568 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens MLS10] gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10] Length = 388 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 GE++SGTV+R+ V VD+G DG++ + E + GD VK + V + Sbjct: 189 GEVVSGTVQRITSFGVFVDIGGVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPD 248 Query: 193 Q 193 Sbjct: 249 N 249 >gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] Length = 708 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 10/117 (8%) Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQ-----GRAREYLEGIDITLQKKIREL 431 +A + +E+L +A ++G A I RE + ++ E+ Sbjct: 556 IAAAYPSMEKLMNATEEGLAQVDGIGAVIAKSIVTFLATEDNREVIHRLERAGVTMADEV 615 Query: 432 GVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488 S+ ++ GI + +L E+G+ E + D L G++ K G++ Sbjct: 616 KESDIPQTLAGITFVLTGSLTESGMTRTE-----AGDRLKAMGAKVSGSVSKKTGYV 667 >gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201] gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201] Length = 493 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++ GTV +V+ V++D+G ++GVI E + + GD V++ + + Sbjct: 33 GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDDVVAVGDEVEALVL--PK 90 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 91 EDKEGRLILS 100 >gi|148594016|emb|CAL63577.1| ribosomal protein S1 [Sinorhizobium xinjiangense] gi|148594028|emb|CAL63583.1| ribosomal protein S1 [Sinorhizobium xinjiangense] gi|148594038|emb|CAL63588.1| ribosomal protein S1 [Sinorhizobium fredii] gi|148594044|emb|CAL63591.1| ribosomal protein S1 [Sinorhizobium fredii] gi|148594046|emb|CAL63592.1| ribosomal protein S1 [Sinorhizobium fredii] gi|148594066|emb|CAL63602.1| ribosomal protein S1 [Sinorhizobium fredii] Length = 403 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 36 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVEGVVKNITDYGAFVDL 93 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 94 GGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQIIRINQET 134 >gi|57505916|ref|ZP_00371840.1| hypothetical protein CUPA0052 [Campylobacter upsaliensis RM3195] gi|57015716|gb|EAL52506.1| hypothetical protein CUPA0052 [Campylobacter upsaliensis RM3195] Length = 221 Score = 38.5 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 22/168 (13%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE-----FKDKV-- 138 + + ++ D G+V + K + K + R Y E FK++V Sbjct: 35 ELNFEFQDKNLIIYENFINDLGQVRKRVVK--LSSKNKNKLRIYLYEEIIALLFKERVRK 92 Query: 139 ---GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN----LRPGDRVKSYIYDVRR 191 +II G + + + + E ++ +IY V Sbjct: 93 IKKQKIILGKIIDKSSFGLTLQTEYGKAYAPYKLLLKHEQKAGFYALNQMLEFHIYKVSV 152 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + +G ++L RT + L I N + + R G R K+ Sbjct: 153 KNKGLNLILDRTSKALALHLCRQ----ILNS--HIFDIKRAFGVRTKI 194 >gi|70726436|ref|YP_253350.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435] gi|84029458|sp|Q4L6I1|RS1_STAHJ RecName: Full=30S ribosomal protein S1 gi|68447160|dbj|BAE04744.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435] Length = 392 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD +++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEVDE 78 >gi|126459376|ref|YP_001055654.1| Fis family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249097|gb|ABO08188.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM 11548] Length = 312 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L + G+ K L E G+ ++E LA +V++L+ ++ + +GT Sbjct: 8 DPLEGLEGVGPKTLERLRELGVTSVEHLAEFTVEELVEAGVEYDRAVKILQQAIQRVGTT 67 Query: 495 KDQVESMIIHARY 507 + + AR Sbjct: 68 RP------MTARE 74 >gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis thaliana] gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis thaliana] Length = 161 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 27/112 (24%) Query: 108 RVAVQSAKQVIIQKVREAERDRQY------LEFKDKVGEIISGTVKRVEYGNVIVDLGNS 161 VAV + ++ K+RE + + + FK GEII G V +V V + G Sbjct: 32 YVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPI 91 Query: 162 DGV------IRRDETISREN----------LRPGDRVKSYI-----YDVRRE 192 + V + + I EN ++ V+ + +V RE Sbjct: 92 ENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVERE 143 >gi|88810653|ref|ZP_01125910.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231] gi|88792283|gb|EAR23393.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231] Length = 563 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RD + G + + +D R V +++ ++++ AER+ + + G+++ G V Sbjct: 142 RDTTYLEGKDLEFKVIKLDPRRNNVVVSRRAVVEEEYSAEREALLEKL--QEGQVLKGIV 199 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + E + GD V + RE+ Sbjct: 200 KNLTDYGAFVDLGGIDGLLHITDMAWRRVKHPSEVVNVGDEVDVKVLKFDRERN 253 >gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71] gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71] Length = 674 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M + E I LV G DV +L ++ + S+E E++A ++ A + Sbjct: 451 MDIDGLGEKIVEQLVDRGLVRDVADLFKLEQGALLSLERMGEKSAAKLLA-AIDA--SRQ 507 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 TL + I LGV E + +AL + T+E L+G +DDLL + Sbjct: 508 TTLPRFIFALGVRE-------VGEATALALANH-FGTLEALSGADLDDLLEVPDVGPVVA 559 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMG 510 E GF + ++ + G Sbjct: 560 EHVHGFF------RADANLGVLRRLLEAG 582 >gi|86609476|ref|YP_478238.1| hypothetical protein CYB_2028 [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558018|gb|ABD02975.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 515 Score = 38.5 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 LL G +E LA ++ + +I A+++Q +AR L Sbjct: 272 LLQEAGIHSIEALANAQLDRLQAIPKLGSGVALQLQLQARATLSRQ 317 >gi|307211856|gb|EFN87803.1| Vigilin [Harpegnathos saltator] Length = 1243 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 27/143 (18%) Query: 254 CVGMRGSRVQAVVTELR---------DEKIDIVVW---SPDSATFVINALRPAIVTKVVL 301 +G +G ++ + + EK DIV D + ++ L Sbjct: 497 IIGNKGDNIKEIRDKFNQVQITIPGPGEKGDIVKIRGPKEDVDKCHKHLMKLVK----EL 552 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID-----------IITEEEDSIN 350 +E +EV + K+ IG+ G N+R + T ID IIT +++++ Sbjct: 553 NESNHVLEVPIFKQFHKFVIGKGGVNIRKIREETQTKIDLPAEGDKSDVIIITGKKENVE 612 Query: 351 RQKDFNERTQFFMQAINVDEIIA 373 + K+ ++ Q + I DEI Sbjct: 613 KAKEMIQKIQNELANIVTDEITI 635 >gi|261194837|ref|XP_002623823.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081] gi|239588361|gb|EEQ71004.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081] gi|239613363|gb|EEQ90350.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ER-3] gi|327351860|gb|EGE80717.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ATCC 18188] Length = 348 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L++ G+ +E +A + I+G E+ A +I A Sbjct: 39 IKLVIEGGYHTIESVAYTPKRALEQIKGISEQKAAKILAEA 79 >gi|332023809|gb|EGI64033.1| Vigilin [Acromyrmex echinatior] Length = 1224 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 16/107 (14%) Query: 254 CVGMRGSRVQAVVTELR---------DEKIDIVVW---SPDSATFVINALRPAIVTKVVL 301 +G +G ++ + + EK DIV D + ++ L Sbjct: 482 IIGNKGDNIKEIRDKFNQVQIVIPGPGEKGDIVKIRGPKEDVDKCHKHLMKLVK----EL 537 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +E +EV + K+ IG+ G N+R + T ID+ E E S Sbjct: 538 NESNHVLEVPIFKQFHKFVIGKGGVNIRKIREETQTKIDLPAEGEKS 584 >gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20] gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505] gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505] Length = 484 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVL--QK 93 Query: 192 EQRGPQVLLS 201 E + ++LLS Sbjct: 94 EDKEGRLLLS 103 >gi|260619563|gb|ACX47468.1| DNA polymerase beta [Pongo pygmaeus] Length = 296 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 36 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 91 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 92 KFVDEGIKTLEDL 104 >gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] Length = 668 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 17/143 (11%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 +I+T+ E S NR+ D R + NV A L F +++ L K E+ IE Sbjct: 494 NILTQIEQSKNRELD---RLINALGIPNVGSKTAKDLANH-FKNLDSLIDAKFDELVEIE 549 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS---EELCSIPGIDSKIKVALGENGI 456 G E+ A I + + + + KK+++ GV+ +E + G + I Sbjct: 550 GIGEDIANAII---KFFSQEEVKKIVKKLKDAGVNMGKKEEEKLEGPLKGLV-------I 599 Query: 457 KTMEDLAGCSVDDLLGWSENKGG 479 L+ + + + E+KGG Sbjct: 600 CQTGALSKMTRQEFAEYVESKGG 622 >gi|300856020|ref|YP_003781004.1| putative 30S ribosomal protein S1 [Clostridium ljungdahlii DSM 13528] gi|300436135|gb|ADK15902.1| predicted 30S ribosomal protein S1 [Clostridium ljungdahlii DSM 13528] Length = 392 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISREN------LRPGDRVKSYIYDV 189 + GE++ G V V +V++G DGV+ + E EN L+ GD + Y+ Sbjct: 25 RSGEVVKGKVISVTDEQAMVNIGYIVDGVLPKSELCKDENVNVDEVLKVGDEIYVYVIKT 84 Query: 190 RREQRGPQVLLS 201 E VLLS Sbjct: 85 NDEDGN--VLLS 94 >gi|167752365|ref|ZP_02424492.1| hypothetical protein ALIPUT_00609 [Alistipes putredinis DSM 17216] gi|167660606|gb|EDS04736.1| hypothetical protein ALIPUT_00609 [Alistipes putredinis DSM 17216] Length = 647 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D +D +F R V S K +I ++ EA++ Sbjct: 197 EAFLPGSQIDVKPIRDYDVYVDKTMEFKVVKINQEF-RNVVVSHKALIEAEL-EAQKQVI 254 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+I+ GTVK + V VDLG DG+I + E + ++++ Sbjct: 255 MSKLE--KGQILEGTVKNITSYGVFVDLGGVDGLIHITDLSWGRVNHPEEIVSLDEKIRV 312 Query: 185 YIYDVRREQR 194 I D ++ Sbjct: 313 VILDFDDAKK 322 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 E+ GTV + V+V++G S+G+I E +L+ GD+++ Y+ + Q Sbjct: 93 NEVTEGTVIGINKREVVVNIGYKSEGIIPISEFRYNPDLKVGDKIEVYVESAEDKNG--Q 150 Query: 198 VLLS 201 + LS Sbjct: 151 LALS 154 >gi|66807509|ref|XP_637477.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4] gi|60465898|gb|EAL63968.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4] Length = 804 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 15/112 (13%) Query: 118 IIQKVREAERDRQYLEFKDKV-GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI---- 171 + R E ++++ + D G ++ G ++ V ++ V+L + GV+ R Sbjct: 538 VTYTARTRELEKKFYSYNDLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNI 597 Query: 172 --SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYN 221 E + G VK I +V +++ Q+ L L + E P I + Sbjct: 598 TDPLEFFKVGATVKVRIINVEPDKKRLQLTL-------KKSLIYSEYPIITD 642 >gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1] gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1] Length = 674 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 12/112 (10%) Query: 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M + + I LV +GF +L + ++ ++EGF ++ A I + Sbjct: 453 MDIVGLGIKIVEQLVEKGFVQSPADLYFLSKEDLLTLEGFADKKAENILQAIQNSRSRPL 512 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 L + I G+ + L ++ K ++ L+ +V L+ Sbjct: 513 SRLITALG----------IRGVGEVMAGELAKH-FKNLDALSKATVQQLMEI 553 >gi|308063837|gb|ADO05724.1| 30S ribosomal protein S1 [Helicobacter pylori Sat464] Length = 552 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + I+ G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIVEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRR-DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R ++ + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSRSSLKNDANHIGKRIKACIIHVDKENH--SINISR 178 >gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18] gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18] Length = 484 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++SG V ++++ V++D+G ++GVI E E + G V++ + + Sbjct: 33 GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVL--TK 90 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 91 EDKEGRLILS 100 >gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296] gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296] Length = 484 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+++SG V ++++ V++D+G ++GVI E E + G V++ + + Sbjct: 33 GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVL--TK 90 Query: 192 EQRGPQVLLS 201 E + +++LS Sbjct: 91 EDKEGRLILS 100 >gi|222147164|ref|YP_002548121.1| 30S ribosomal protein S1 [Agrobacterium vitis S4] gi|221734154|gb|ACM35117.1| 30S ribosomal protein S1 [Agrobacterium vitis S4] Length = 573 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 81 EVYVERIENALGEAVLSREKARREESWIKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAV 140 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + MD R + +++ ++++ R +R Sbjct: 141 A---FLPRSQVDIRPIRDVTPLMHNPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 195 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 196 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQSV 253 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 254 KVQIIRINQET 264 >gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MW2] gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MW2] gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 698 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|324508089|gb|ADY43419.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Ascaris suum] Length = 678 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%) Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE E+ VP + + IG+ GQNVR ++TG + I + + ++ Sbjct: 559 LDEVRLCTEISVPSKLVGRIIGKGGQNVRELQRVTGAQVKIPDDAGEDETQESTTVRVLG 618 Query: 361 FFMQAINVDEIIAHLLVA 378 F + V +A L+ Sbjct: 619 NFQASQAVQARLAQLMQE 636 >gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 698 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|289550745|ref|YP_003471649.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01] gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590] gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01] gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590] Length = 392 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ I+G V++VE V+V + G +G+I + E + GD +++Y+ Sbjct: 14 KEGDKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEVDE 78 >gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TW20] Length = 698 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|145492218|ref|XP_001432107.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399216|emb|CAK64710.1| unnamed protein product [Paramecium tetraurelia] Length = 340 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 14/41 (34%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L GF E +A + +I+G + ++ Sbjct: 36 IQRLKDAGFTTCESIAYTAKKNLMNIKGMTDAKIEKLVEAV 76 >gi|90420974|ref|ZP_01228878.1| 30S ribosomal subunit protein S1 [Aurantimonas manganoxydans SI85-9A1] gi|90334752|gb|EAS48528.1| 30S ribosomal subunit protein S1 [Aurantimonas manganoxydans SI85-9A1] Length = 566 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P ++ + MD R + +++ ++++ R +R Sbjct: 137 PRSQVDIRPIRDVGPLMNTPQP--FQILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNL 194 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + G+++ G VK + VDLG DG++ + E L+ G VK I Sbjct: 195 E--EGQVVDGIVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILQIGQTVKVQIIR 252 Query: 189 VRREQ 193 + +E Sbjct: 253 INQET 257 >gi|1279214|emb|CAA65788.1| putative ribosomal protein [Bacteroides fragilis] Length = 160 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Query: 125 AERDRQYLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 E ++ Y +KV E++ GTV + V+V++G SDG+I +E +L+ GD Sbjct: 30 EELEKAYDGTLNKVNDREVVDGTVIAMNKREVVVNIGYKSDGIIPLNEFRYNPDLKVGDT 89 Query: 182 VKSYIYDVRREQRGPQVLLS 201 V+ YI +E + Q++LS Sbjct: 90 VEVYIE--NQEDKKGQLVLS 107 >gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus N315] gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus COL] gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH9] gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH1] gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. Newman] gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu3] gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus 132] gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MR1] gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus N315] gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu3] gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ST398] gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 04-02981] gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA177] gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O11] gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O46] gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 698 Score = 38.5 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|320529136|ref|ZP_08030228.1| putative ribosomal protein S1 [Selenomonas artemidis F0399] gi|320138766|gb|EFW30656.1| putative ribosomal protein S1 [Selenomonas artemidis F0399] Length = 384 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L +D S+ + V + +D + + +++ ++++ R + + + Sbjct: 129 PASQMELHFVKDL--SVYVDQTVEAEIIEVDVQKRRLVLSRRKLLERDRAEKEEAVFSAI 186 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + +++ GTVKR+ +D+G DG+ + E L G + Y+ Sbjct: 187 EP--EQVVRGTVKRLVDYGAFIDIGGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKS 244 Query: 189 VRREQRGPQVLL 200 V R+ + + + Sbjct: 245 VDRDAKRISLSV 256 >gi|308062330|gb|ADO04218.1| 30S ribosomal protein S1 [Helicobacter pylori Cuz20] Length = 552 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRR-DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R ++ + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSRSSLKNDANHIGKRIKACIIHVDKENH--SINISR 178 >gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 698 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 68/183 (37%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD+++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDKIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus] Length = 697 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 64/205 (31%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRV-----------EINPETGDISLFRLLEVV 69 + ++++ + + RV I+ ++S F V Sbjct: 517 GLTKEIIKEALEQA---------------RVGRLAILDHMLQTIDTPRNELSAFAPKVV- 560 Query: 70 EEVENYTCQISLKVARD-RDPSI----DIGGVVSDPLPPMD--------FGRVAVQSAKQ 116 T I + RD P +I L + A+ A++ Sbjct: 561 ------TMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDKNAIDQARK 614 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN- 175 +I REAE + Y G VKR+E V+L + I+ E Sbjct: 615 IIEDITREAEVGQVYE-----------GKVKRIEKYGAFVELFPGKDALVHISQIANERI 663 Query: 176 ------LRPGDRVKSYIYDVRREQR 194 L+ GD K + ++ ++ R Sbjct: 664 EKVEDVLKVGDTFKIKVTEIDKQGR 688 >gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843] gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843] Length = 669 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 V + A +L AE F VEELA ++++ASI G EE A + Sbjct: 520 VGSVNAKIL-AESFRTVEELANASVTDLASIYGIGEEIAQSV 560 >gi|159905833|ref|YP_001549495.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C6] gi|226736608|sp|A9AA90|RADA_METM6 RecName: Full=DNA repair and recombination protein radA gi|159887326|gb|ABX02263.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C6] Length = 322 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTAEKLIEAGYLDFMKIATSTIGELTDIEGISE 46 >gi|290462499|gb|ADD24297.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis] Length = 350 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 19/57 (33%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F ++ + L G+ VE + + +I+G E A ++ Sbjct: 31 FGPMPISVLEQHGISASDVKKLSEVGYHTVESIVYAPKKSLLAIKGISEAKADKLLA 87 >gi|227541318|ref|ZP_03971367.1| FAD linked oxidase family protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182869|gb|EEI63841.1| FAD linked oxidase family protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 964 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 20/135 (14%) Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVA 378 L IG G + I E E + T M +++ LV Sbjct: 273 LMIGAEGI------------LGFIAEAEIATVAHPKMAAVTWVMMPKMDLAANYVDRLVK 320 Query: 379 EGFADVEELACVKISE-IASIEG-------FDEETAVEIQGRAREYLEGIDITLQKKIRE 430 G VE LA + E + S G E+ A + A + E + +Q Sbjct: 321 AGAESVELLASPAMREAVGSFPGAHEEWLNLPEDMAALLLEVAADDEESLQAKMQAARDA 380 Query: 431 LGVSEELCSIPGIDS 445 L ++ L + + Sbjct: 381 LQDADLLQPLDFMRE 395 >gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428] gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428] Length = 566 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 125 AERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +D F++ K G+I+ G + V V+VD+G S+G + E ++++ GD V Sbjct: 7 EMKDLIAKSFREFKEGQIVKGRIIEVRPREVLVDIGYKSEGAVSLSEFDDADDIQIGDEV 66 Query: 183 KSYIYDVRREQRGPQVLLS 201 + I + E+ V+LS Sbjct: 67 EVLILRLENEEG--SVILS 83 >gi|114568652|ref|YP_755332.1| 30S ribosomal protein S1 [Maricaulis maris MCS10] gi|114339114|gb|ABI64394.1| SSU ribosomal protein S1P [Maricaulis maris MCS10] Length = 566 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDE-TISR-ENLRPGDRVKSYIYDVRREQR 194 G++I G+V +E G+V+VD+G ++G I E T + + GD V+ Y+ + Sbjct: 28 EGQVIKGSVTAIENGDVVVDVGLKTEGRIPLREFTGPGSDAPKVGDDVEVYLERIENALG 87 Query: 195 GPQVLLSR 202 +LSR Sbjct: 88 DA--ILSR 93 >gi|257790478|ref|YP_003181084.1| DNA-directed RNA polymerase, beta' subunit [Eggerthella lenta DSM 2243] gi|317490022|ref|ZP_07948513.1| DNA-directed RNA polymerase [Eggerthella sp. 1_3_56FAA] gi|257474375|gb|ACV54695.1| DNA-directed RNA polymerase, beta' subunit [Eggerthella lenta DSM 2243] gi|316910863|gb|EFV32481.1| DNA-directed RNA polymerase [Eggerthella sp. 1_3_56FAA] Length = 1470 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + V + A+ G V +L ++ IEG + E+ +E LE D+T Sbjct: 1322 DDLGVSQRWANKFSEAGIETVADLVGHTEEDLLRIEGIGVKAIEEL----KEGLEAHDLT 1377 Query: 424 LQKKIRELGVSEELCSIPGI 443 + S+++ + + Sbjct: 1378 HVIEDDLAATSDDMSQLLDM 1397 >gi|255940094|ref|XP_002560816.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585439|emb|CAP93135.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255] Length = 344 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L V G+ VE +A + I+G E+ A +I A + Sbjct: 35 IKLFVDAGYHTVESVAYTPKRLLEQIKGISEQKATKILVEASK 77 >gi|325829977|ref|ZP_08163435.1| DNA-directed RNA polymerase, beta' subunit [Eggerthella sp. HGA1] gi|325488144|gb|EGC90581.1| DNA-directed RNA polymerase, beta' subunit [Eggerthella sp. HGA1] Length = 1470 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + V + A+ G V +L ++ IEG + E+ +E LE D+T Sbjct: 1322 DDLGVSQRWANKFSEAGIETVADLVGHTEEDLLRIEGIGVKAIEEL----KEGLEAHDLT 1377 Query: 424 LQKKIRELGVSEELCSIPGI 443 + S+++ + + Sbjct: 1378 HVIEDDLAATSDDMSQLLDM 1397 >gi|258570189|ref|XP_002543898.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704] gi|237904168|gb|EEP78569.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704] Length = 348 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 LL+ G+ VE +A + I+G E+ A + A Sbjct: 38 IKLLIDGGYHTVEAVAYTPKKVLEQIKGISEQKAARVLAEA 78 >gi|238026536|ref|YP_002910767.1| 30S ribosomal protein S1 [Burkholderia glumae BGR1] gi|237875730|gb|ACR28063.1| Ribosomal protein S1 [Burkholderia glumae BGR1] Length = 576 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 465 KGSIVDGVVKSVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 524 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 525 RKSRG--INLS 533 Score = 37.4 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 157 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 214 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 215 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 268 >gi|163784880|ref|ZP_02179650.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1] gi|159879849|gb|EDP73583.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1] Length = 368 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + ++ +K++ + +K+ +VDLG + E+ ++ + + Sbjct: 87 IFREALEKVENAYKNQEK--VPAKLKKQLEKGFLVDLGGIQAFLPYSESGLKKEEKLPEE 144 Query: 182 VKSYIYDVRREQRGPQVLLSR 202 + YI + + ++ P +++SR Sbjct: 145 FEVYILKLDKNRKIPNIVVSR 165 >gi|108762762|ref|YP_631752.1| 30S ribosomal protein S1 family protein [Myxococcus xanthus DK 1622] gi|108466642|gb|ABF91827.1| ribosomal protein S1 family protein [Myxococcus xanthus DK 1622] Length = 548 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 16/99 (16%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR- 190 G+I+ G V V V VDLG +G+I E + ++ GD V+ I + Sbjct: 243 QGKIVKGKVTGVRDFGVFVDLGGVEGMIPVSELSYTRVGHPSDVVKVGDDVEVEILRMEA 302 Query: 191 -------REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 + ++ ++ LS Q F + EI G Sbjct: 303 GQPNSPDKSKQKERITLSMRSRQ--EDPFQKALSEIKEG 339 >gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus RF122] gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus RF122] Length = 698 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 517 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 571 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 572 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 625 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 626 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 685 Query: 192 EQR 194 + R Sbjct: 686 QGR 688 >gi|95928238|ref|ZP_01310986.1| hypothetical protein Dace_3026 [Desulfuromonas acetoxidans DSM 684] gi|95135509|gb|EAT17160.1| hypothetical protein Dace_3026 [Desulfuromonas acetoxidans DSM 684] Length = 138 Score = 38.5 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 + A LL G E+LA K+ +A+++GF E + + A+ + + Sbjct: 27 GIGPATAALLAENGITSAEQLAAQKVGSLAAVKGFSEARSRRVIADAQALFAAVSTETET 86 Query: 427 KIRELGVSE 435 K ++ + Sbjct: 87 KTSDVPDQD 95 >gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928] Length = 579 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Query: 386 ELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV--SEELCSIPGI 443 +LA + + + +I G + TA +I EYL + + +R E+ IPG+ Sbjct: 45 DLAHLDEAGLRAIPGVGDSTAEKI----SEYLASGRMEALESLRAKIPPGVREVTQIPGV 100 Query: 444 DSKIKVALGEN-GIKTMEDL 462 K V L GIK++++L Sbjct: 101 GPKTAVLLYRKLGIKSVDEL 120 >gi|225714670|gb|ACO13181.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis] Length = 350 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 19/57 (33%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 F ++ + L G+ VE + + +I+G E A ++ Sbjct: 31 FGPMPISVLEQHGISASDVKKLSEVGYHTVESIVYAPKKSLLAIKGISEAKADKLLA 87 >gi|149198973|ref|ZP_01876014.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155] gi|149137968|gb|EDM26380.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155] Length = 647 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 21/129 (16%) Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 +DI+ E + K ++A V E I L G+ V+ L + + ++ Sbjct: 383 RVDIVCENKLCPATNKAALIDFFSTLKADEVGEGIITSLWDAGYQSVKNLLNLTMEDLLK 442 Query: 398 IEGFDEETAVEIQGRAR------------------EYLEGIDITLQKKIRELGVS---EE 436 +EGF + A ++ + + L + L +K + G+ EE Sbjct: 443 LEGFKQRKAKKVLDSIKISVVDVPLPRLQHASNLFKGLGEKKLELLQKYDQAGIKPSFEE 502 Query: 437 LCSIPGIDS 445 L + G Sbjct: 503 LLEVDGYSE 511 >gi|88607931|ref|YP_504887.1| 30S ribosomal protein S1 [Anaplasma phagocytophilum HZ] gi|88598994|gb|ABD44464.1| ribosomal protein S1 [Anaplasma phagocytophilum HZ] Length = 542 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVKSYIYDVRRE 192 + GEII GTV + G + VD G S+GV+ E E ++ G +VK Y+ + E Sbjct: 34 REGEIIEGTVICKDSGYITVDAGLKSEGVVSLREFELGEGKQDIEVGSKVKLYLE--KTE 91 Query: 193 QRGPQVLLSR 202 + V+LSR Sbjct: 92 GKSGSVVLSR 101 >gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF] Length = 383 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 9/91 (9%) Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI----- 171 + + E + + + K GE+++G V +V + V++G +DG++ RDE Sbjct: 1 MSHDMEELMEEIEKSLIRPKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDEISNDPTI 60 Query: 172 -SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 ++ + D + YI + VLLS Sbjct: 61 TPQDVAKADDEISVYIIKTDDGEGN--VLLS 89 >gi|300172736|ref|YP_003771901.1| cell division protease [Leuconostoc gasicomitatum LMG 18811] gi|299887114|emb|CBL91082.1| Cell division protease ftsH homolog [Leuconostoc gasicomitatum LMG 18811] Length = 695 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 380 GFADVEELACVKISEIASIEGFDEETA----VEIQGRAREYLE-GIDITLQKKIRELGVS 434 G +E A V +E A G+ EETA E++ ++E E I + K + + ++ Sbjct: 547 GMVQLEGNASVGYAEQAGNRGYSEETARLIDEEVRRLSKEAFEDATKIISEHKDKLIAIA 606 Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---GWSENKGGNIEKFDGFLSSL 491 E L + +D K + E G T +D+ D+L + E K K + Sbjct: 607 EALLEVETLDEKQIKDIYETGKFTRKDI--QDNDELATAKSFDEAKAAVDAKDSEAEARF 664 Query: 492 GTPKDQVES 500 ++ E+ Sbjct: 665 ENHDEEPEN 673 >gi|268316851|ref|YP_003290570.1| 30S ribosomal protein S1 [Rhodothermus marinus DSM 4252] gi|262334385|gb|ACY48182.1| ribosomal protein S1 [Rhodothermus marinus DSM 4252] Length = 720 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPL-PPMDFGRVAVQSAKQVIIQKVREAER 127 V E E ++ A+ P + G ++ P+ D + Q A++V E Sbjct: 56 VAEAEAEPEPVAEAPAQKTRPVLGFKGEITGPVVKLEDLEKQ--QEAREV--DPFHEQLL 111 Query: 128 DRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 + F GEI+ G + V VI+D+G S G++ R+E E ++PGD V+ + Sbjct: 112 RQIEESFTTVNEGEIVKGRILAVGEKEVIIDIGFKSTGIVSRNEFGDAE-IKPGDEVEVF 170 Query: 186 IYDVRREQRGPQVLLS 201 + + Q Q++LS Sbjct: 171 VERLEDAQG--QLVLS 184 >gi|194381662|dbj|BAG64200.1| unnamed protein product [Homo sapiens] Length = 140 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ ++ F + ++ ++ L GF VE +A E+ +I+G E Sbjct: 12 DTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAMM 71 Query: 407 VE 408 VE Sbjct: 72 VE 73 >gi|188588993|ref|YP_001921151.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188499274|gb|ACD52410.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum E3 str. Alaska E43] Length = 635 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI +K +D+ I+ V + V ++++V+++ ++E E ++ + Sbjct: 418 PASQIDVKFTKDKSKYINQVLEVKL-IDYSTEEHKKVIASRRVLLEVIKETEEEKIWESL 476 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 VG++I VKR +D+ DG++ + + L+ + ++ I Sbjct: 477 N--VGDVIKAEVKRFTKFGAFLDVNGIDGLLHLSQISWNHVKNIEDILKKDEMIEVKIIA 534 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY-NGIVQVKAVSRD 232 + +E + ++ LSR + + K + V E Y G + + V R Sbjct: 535 LDKENK--KLSLSRK--ELLPKPWEN-VKEKYPEGSIVLGKVVRI 574 >gi|114704383|ref|ZP_01437291.1| 30S ribosomal protein S1 [Fulvimarina pelagi HTCC2506] gi|114539168|gb|EAU42288.1| 30S ribosomal protein S1 [Fulvimarina pelagi HTCC2506] Length = 569 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIRVEI-NPETGDISLFRLLEV 68 +V + + +++ +A AR + + +I N G ++ V Sbjct: 75 EVYVERIENALGEAVLSRDKARREESWIRLEAKFNENEKVEGQIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P ++ + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMNTPQP--FQILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L+ G V Sbjct: 190 EIVQNLE--EGQVVDGIVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILQIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|258545130|ref|ZP_05705364.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826] gi|258519649|gb|EEV88508.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826] Length = 556 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +DP++ G + + +D R + +++ +++ +AERD + G+++ V Sbjct: 141 KDPALSEGKEIDFKIIKLDQKRNNIVISRRAVLENEYKAERDEVLKNL--QEGDVVKAVV 198 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 K + +D+G DG++ + E + GD V+ + RE+ Sbjct: 199 KNLTDYGAFLDIGGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRER 251 >gi|239830871|ref|ZP_04679200.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301] gi|239823138|gb|EEQ94706.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301] Length = 576 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 85 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 144 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 145 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 199 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 200 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 257 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 258 KVQIIRINQET 268 >gi|114770170|ref|ZP_01447708.1| 30S ribosomal protein S1 [alpha proteobacterium HTCC2255] gi|114549007|gb|EAU51890.1| 30S ribosomal protein S1 [alpha proteobacterium HTCC2255] Length = 559 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 D R + +++ I+++ R +R + G+ + G VK + VDLG DG+ Sbjct: 165 DRRRGNIVVSRRAILEESRAEQRAEIVGKLA--EGDAVDGVVKNITDYGAFVDLGGVDGL 222 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + + E L G+ +K + + ++ Sbjct: 223 LHVTDMAWSRVNHPSEVLTIGETIKVQVIKINKDT 257 >gi|12854668|dbj|BAB30101.1| unnamed protein product [Mus musculus] gi|148665857|gb|EDK98273.1| SAM domain, SH3 domain and nuclear localization signals, 1, isoform CRA_b [Mus musculus] Length = 540 Score = 38.5 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 9/109 (8%) Query: 339 IDIITEEEDS-------INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +D+I EEE + +R+++ ++ Q F++ I++ E + LL+ G+ +++L +K Sbjct: 387 VDVILEEEAAPKKIKVPRSRRRENHQTIQEFLERIHLQEYTSTLLL-NGYETLDDLKDIK 445 Query: 392 ISEIASIEGFDEETAVEIQGRAREYL-EGIDITLQKKIRELGVSEELCS 439 S + + D E + A L E + +K+ L + ++ S Sbjct: 446 ESHLIELNIADPEDRARLLSAAESLLDEETTVEHEKESVPLSSNPDILS 494 >gi|312794314|ref|YP_004027237.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181454|gb|ADQ41624.1| RNA binding S1 domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 256 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 14/116 (12%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ L+ +G ++ + VA Q K I + +R + + E Sbjct: 54 DEAELGLQEQVKNKADALLGALIEFVV-------VAQQHGKFYISRVKAMEKRRKIWQE- 105 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 K + G+++ G + V N +++ + + +E + R + + DRVK+ Sbjct: 106 KVREGDVVEGRITGVTPKNAFIEVLGYELALPAEEMLWNYTNDLRRHFKIADRVKA 161 >gi|312127611|ref|YP_003992485.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor hydrothermalis 108] gi|311777630|gb|ADQ07116.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor hydrothermalis 108] Length = 663 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 20/120 (16%) Query: 89 PSIDIGGVVSDPLPPMDFGRVA-VQSAKQVIIQKVREAERD------RQYLEFKDK---- 137 ++ + G A ++ + I + V+ E + + F + Sbjct: 242 DKVEDLDSIKLDSHIKSIGVTAGASTSPEQIEEVVKHLEEKFNEMSLKDFERFIGRNFLT 301 Query: 138 --VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 GE++ G + +VE V+VD+G ++G+I +DE I + + G+ +++ + Sbjct: 302 VQRGEVVKGRIIKVEEDYVLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGETIEAVVIK 361 >gi|223043234|ref|ZP_03613281.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis SK14] gi|222443445|gb|EEE49543.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis SK14] Length = 392 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 22/117 (18%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 V---RREQRGPQVLLSR-----THPQFMV------KLFHMEVPEIYNGIVQVKAVSR 231 + G +L R +F+ ++ EV E+ G + V R Sbjct: 74 IEFDEENDSGAYILSKRQLETEKSYEFLQEKLDNDEVIEAEVTEVVKGGLVVDVGQR 130 >gi|20067709|emb|CAD29096.1| chimeric DNA-directed DNA polymerase bf2-8 [synthetic construct] Length = 335 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|296242500|ref|YP_003649987.1| DNA repair and recombination protein RadA [Thermosphaera aggregans DSM 11486] gi|296095084|gb|ADG91035.1| DNA repair and recombination protein RadA [Thermosphaera aggregans DSM 11486] Length = 326 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL-EGIDI 422 V+ IA L A G++ + ++ E+A G ++ AR L Sbjct: 18 DIPGVNPAIADKLEAAGYSSAWTVVVARVDELAEKTGIPPTALQKVIENARRALGITFKT 77 Query: 423 TLQKKIRELGV 433 + K+ L + Sbjct: 78 AREVKLERLNI 88 >gi|195387273|ref|XP_002052320.1| GJ17491 [Drosophila virilis] gi|194148777|gb|EDW64475.1| GJ17491 [Drosophila virilis] Length = 579 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 17/104 (16%) Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTI------------DII----TEEEDSINRQ 352 +++V + + L IGR G N++L + TG I DI + + Sbjct: 72 KIVVDNDHVPLIIGRGGANIKLIEEKTGAKIRLRDKDNSHKFCDINGLPDAVKAARVMLI 131 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 K+ M+ + V + +A+ + G +++++ +++++ Sbjct: 132 KEIERAPIVKME-LQVPQRLANKINGRGGEIIQDISRASLAKLS 174 >gi|170078958|ref|YP_001735596.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002] gi|169886627|gb|ACB00341.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002] Length = 296 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI--SREN----LRPGDRVKSYIYDVRR 191 +G ++SGTV ++ V V+L G++ R + E G V+ I D+ Sbjct: 193 IGALVSGTVVNIKPYGVFVELDGMTGLLHRSQISAKPVEQIEALFSIGQTVRVLITDIEE 252 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 ++ LS ++ F EV E ++ VQ A R +R KL Sbjct: 253 SNN--RISLS----LQALEKFPGEVIEQFD-AVQTNAEERVEAARKKL 293 >gi|161611256|ref|YP_296774.2| 30S ribosomal protein S1 [Ralstonia eutropha JMP134] Length = 564 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 22/137 (16%) Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + + Q + + A G V + +D K+ I +++ D + Sbjct: 400 DLSWQETGEEAVR---KYKKGDEVEAVVLGIDVD-------KERISLGIKQLSGDP-FNN 448 Query: 134 FK--DKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKS 184 F + G +++GT+K V+ +V L + +G +R E + R L+ G+++ + Sbjct: 449 FISANDKGSLVTGTIKAVDPKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITA 508 Query: 185 YIYDVRREQRGPQVLLS 201 + +V R+ R + LS Sbjct: 509 LVVNVDRKSRN--INLS 523 Score = 37.4 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 80 SLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 SL R D + G + + +D R V +++ +++ ER + K Sbjct: 139 SLVDVRPIKDTTPYEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLK--E 196 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRRE 192 G I++G VK + VDLG DG++ R E L G + + I +E Sbjct: 197 GAIVNGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQE 256 Query: 193 QR 194 + Sbjct: 257 KN 258 >gi|5002354|gb|AAD37433.1|AF150881_1 ferulate-5-hydroxylase [Solanum lycopersicum x Solanum peruvianum] Length = 521 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 24/139 (17%) Query: 321 IGRRGQNVRLA---SQLTGWTIDIITEEEDSINRQKDFNERT-QFFMQAINVDEIIAHLL 376 IG++G NVRLA + L G+ I T +D I R+K + + ++ VDE++A Sbjct: 231 IGKQGLNVRLAKARASLDGF---IDTIIDDHIERKKAIHVINDDGYRESDMVDELLA--- 284 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQ--------GRAREYLEGIDITLQKKI 428 F EE + ++ + + I +E L K Sbjct: 285 ----FYS-EETKVNESEDLQNAIRLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSP 339 Query: 429 REL-GVSEELCSIPGIDSK 446 +L V +EL ++ G++ K Sbjct: 340 EDLKKVQQELANVVGLNRK 358 >gi|320108571|ref|YP_004184161.1| 30S ribosomal protein S1 [Terriglobus saanensis SP1PR4] gi|319927092|gb|ADV84167.1| ribosomal protein S1 [Terriglobus saanensis SP1PR4] Length = 636 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 17/112 (15%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-V 149 D + + P D R KQ +++ ++ ++ +GEI+ G V+ Sbjct: 395 GDEADTIILAVNPTD--RRISLGMKQ-----LQDNPWEQLENKYP--IGEIVEGRVRNLT 445 Query: 150 EYGNVIVDLGNSDGVIRRDETI-------SRENLRPGDRVKSYIYDVRREQR 194 ++G I DG++ E L+ G++V++ + V E R Sbjct: 446 DFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKGEKVRAVVLGVEPENR 497 >gi|159469155|ref|XP_001692733.1| DNA recombination protein [Chlamydomonas reinhardtii] gi|45685351|gb|AAS75433.1| putative DNA repair protein RAD51 [Chlamydomonas reinhardtii] gi|158277986|gb|EDP03752.1| DNA recombination protein [Chlamydomonas reinhardtii] Length = 343 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE---G 419 +QA V L G VE LA + +++ I+G E ++Q A + + Sbjct: 31 LQAHGVAAADIKKLKEGGIHTVEALAFMPKKQLSEIKGLSEAKIDKMQLVAFKMVPMGFT 90 Query: 420 IDITLQKKIRE 430 + ++ +E Sbjct: 91 TAAAVAEQRKE 101 >gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis NCFD 2020] gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis NCFD 2020] Length = 748 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 36/185 (19%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINP------------ETGDISLFRLLEVVEEVENYT 76 ++ +++ +A ++ + + I+ I +T I + ++ V+ + Sbjct: 520 QILEEALAQAKKARFEILDLIQATIAEPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETI 579 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + D I + + D +VA+ K++I VREA Sbjct: 580 DKIIAETGVKID----IDDEGTVQIFSSD--QVAINRTKEIIAGLVREA----------- 622 Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 KVGE+ V R+E V+L +D ++ E + L G+ V + V Sbjct: 623 KVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVSDVLELGEEVDVKVIKV 682 Query: 190 RREQR 194 + R Sbjct: 683 DEKGR 687 >gi|170050565|ref|XP_001861368.1| igf2 mRNA binding protein [Culex quinquefasciatus] gi|167872165|gb|EDS35548.1| igf2 mRNA binding protein [Culex quinquefasciatus] Length = 992 Score = 38.5 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D+ +E++VP Q+ IG+ GQNVR ++TG I Sbjct: 927 DDVRLTMEILVPSAQVRRIIGKGGQNVRELQRVTGSII 964 >gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386] gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386] Length = 484 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V+ V++D+G ++GVI E E + GD +++ + ++ Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVL--QK 93 Query: 192 EQRGPQVLLS 201 E + ++LLS Sbjct: 94 EDKEGRLLLS 103 >gi|284034556|ref|YP_003384487.1| SNF2-like protein [Kribbella flavida DSM 17836] gi|283813849|gb|ADB35688.1| SNF2-related protein [Kribbella flavida DSM 17836] Length = 742 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 V +L G+ + LA V +E+ ++ G +TA +I R + + + Q Sbjct: 75 EVTGTRVGMLEKAGYRTIGRLAGVSSAELVALPGIGPKTADKITEAVRAVVGDVARSAQF 134 Query: 427 KIRELGVSEELCSI 440 + + + + Sbjct: 135 RFQPDRPDDAQRDL 148 >gi|75674405|ref|YP_316826.1| 30S ribosomal protein S1 [Nitrobacter winogradskyi Nb-255] gi|74419275|gb|ABA03474.1| SSU ribosomal protein S1P [Nitrobacter winogradskyi Nb-255] Length = 567 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA---------------ARSLYGTMSDIR-VEINPETGDISLFRLLEV 68 +V L + +++ +A + + V N G ++ V Sbjct: 78 EVFLDRIENALGEAVLSRDKARREESWGKLEKAFNNNEKVHGVIFNQVKGGFTVDLDGAV 137 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P ++ + MD R + +++ ++++ R +R Sbjct: 138 A---FLPRSQVDIRPIRDVGPLMNNTQP--FQILKMDRRRGNIVVSRRTVLEETRAEQRQ 192 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G++I G VK + VDLG DG++ + E L G V Sbjct: 193 ELVQNLE--EGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLAIGQTV 250 Query: 183 KSYIYDVRREQ 193 K I + E Sbjct: 251 KVKIIKINHET 261 >gi|20067687|emb|CAD29085.1| chimeric DNA-directed DNA polymerase bf4-11 [synthetic construct] Length = 324 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|269124830|ref|YP_003298200.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268309788|gb|ACY96162.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183] Length = 162 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G I++G V+ +E VDLG +G+++ + L G V I DV Sbjct: 11 RAGMIVTGRVRSLERFGAFVDLGGVEGLLKTHNISWRPIEYPSDVLSVGKEVTVKILDVD 70 Query: 191 REQRGPQVLLS 201 QRG Q+ LS Sbjct: 71 L-QRG-QISLS 79 >gi|312283561|dbj|BAJ34646.1| DNA recombinational repair protein [Magnaporthe oryzae] Length = 353 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 L++ G+ VE +A + I+G E+ A +I A + Sbjct: 42 IQLVMEGGYNTVESVAYTPRRMLEQIKGISEQKAGKILAEASK 84 >gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025513|ref|YP_001933285.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14] gi|3322552|gb|AAC65266.1| ribosomal protein S1 (rpsA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018088|gb|ACD70706.1| ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14] Length = 863 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENL----RPGDRVKSYIYDVRREQ 193 G + GTV +V G V VD+ G S+G + E + GD V+ Y+ V Sbjct: 322 GSVRMGTVVQVNAGTVFVDIGGKSEG------RVPVEEFEAPPKAGDGVRVYVERV--TP 373 Query: 194 RGPQVLLSRTHPQ 206 GP LS+T Sbjct: 374 YGP--ELSKTKAD 384 >gi|256043981|ref|ZP_05446896.1| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1] Length = 503 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 12 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 71 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 72 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 127 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 184 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 185 KVQIIRINQET 195 >gi|255525217|ref|ZP_05392159.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium carboxidivorans P7] gi|296188737|ref|ZP_06857124.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium carboxidivorans P7] gi|255511080|gb|EET87378.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium carboxidivorans P7] gi|296046664|gb|EFG86111.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium carboxidivorans P7] Length = 641 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 ++ G VKR+ VD+ DG++ E ++L+ G +VK YI D+ + Sbjct: 476 KDTVVEGEVKRLTNFGAFVDVQGVDGLLHVSEISWGRVEKPEDSLKIGKKVKVYILDIDK 535 Query: 192 E 192 E Sbjct: 536 E 536 >gi|242242755|ref|ZP_04797200.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144] gi|242233891|gb|EES36203.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144] gi|319400825|gb|EFV89044.1| putative ribosomal protein S1 [Staphylococcus epidermidis FRI909] Length = 392 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 >gi|209364104|ref|YP_001424879.2| 30S ribosomal protein S1 [Coxiella burnetii Dugway 5J108-111] gi|215918988|ref|NP_819560.2| 30S ribosomal protein S1 [Coxiella burnetii RSA 493] gi|206583873|gb|AAO90074.2| SSU ribosomal protein S1P [Coxiella burnetii RSA 493] gi|207082037|gb|ABS77449.2| SSU ribosomal protein S1P [Coxiella burnetii Dugway 5J108-111] Length = 555 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP + + MD R V +++ +++ AER + E + G+ I G + Sbjct: 142 RDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEEL--QEGQEIKGVI 199 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + + L GD V + R+++ Sbjct: 200 KNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKK 253 >gi|213972612|ref|NP_001123249.1| Rad51 homolog c [Rattus norvegicus] gi|149053773|gb|EDM05590.1| similar to RAD51L2/RAD51C protein (predicted) [Rattus norvegicus] Length = 366 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGI 420 LVA GF E++ VK SE++ G +E A+E +Q RE L Sbjct: 18 LVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63 >gi|312597477|pdb|3OGU|A Chain A, Dna Polymerase Beta Mutant 5p20 Complexed With 6bp Of Dna Length = 335 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINLLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] Length = 695 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 7/95 (7%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAIN---VDEIIAHLLVAEGFADVEELACVKISEIASI 398 E + N F+ A+ V E A LL F ++ L I E+ I Sbjct: 504 KKVENLRKAIEASKNRPFARFLFALGIRHVGERNAQLLADH-FRSIDRLMEATIDELLQI 562 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433 GF A + R E + + ++ R LGV Sbjct: 563 PGFGPAVAQSVFEFFR---EPKNREMIERFRRLGV 594 >gi|212212974|ref|YP_002303910.1| 30S ribosomal protein S1 [Coxiella burnetii CbuG_Q212] gi|212011384|gb|ACJ18765.1| SSU ribosomal protein S1P [Coxiella burnetii CbuG_Q212] Length = 555 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP + + MD R V +++ +++ AER + E + G+ I G + Sbjct: 142 RDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEEL--QEGQEIKGVI 199 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + + L GD V + R+++ Sbjct: 200 KNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKK 253 >gi|187465986|emb|CAQ51530.1| Rad51 homolog c (S. cerevisiae) [Mus musculus] gi|187465991|emb|CAQ52015.1| Rad51 homolog c (S. cerevisiae) [Mus musculus] gi|187954697|gb|AAI41035.1| RAD51 homolog c (S. cerevisiae) [Mus musculus] Length = 366 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGI 420 LVA GF E++ VK SE++ G +E A+E +Q RE L Sbjct: 18 LVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63 >gi|145499122|ref|XP_001435547.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402680|emb|CAK68150.1| unnamed protein product [Paramecium tetraurelia] Length = 337 Score = 38.5 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 14/41 (34%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 L GF E +A + +I+G + ++ Sbjct: 36 IQRLKDAGFTTCESIAYTAKKNLMNIKGMTDAKIEKLVEAV 76 >gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983] gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983] Length = 1712 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%) Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII---AHLLVAEGFADVEELACVKIS 393 W I + + + R R + + ++ A L GF + +A Sbjct: 697 WRI-LESVFDTFAGRLSSMCHRRPELLALSEIPKLSPAWARQLYDAGFVSPKMVAGATPQ 755 Query: 394 EI---------ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS 434 E+ I E+ + A L + QK V Sbjct: 756 ELQAVLRRVLPRQIPDVPEDALERLINDA--ALTAREQRKQKLREAREVQ 803 >gi|237814503|ref|ZP_04593501.1| ribosomal protein S1 [Brucella abortus str. 2308 A] gi|237789340|gb|EEP63550.1| ribosomal protein S1 [Brucella abortus str. 2308 A] Length = 576 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 85 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 144 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 145 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 199 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 200 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 257 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 258 KVQIIRINQET 268 >gi|20067691|emb|CAD29087.1| chimeric DNA-directed DNA polymerase bf4-13 [synthetic construct] Length = 326 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|16716605|ref|NP_444499.1| DNA repair protein RAD51 homolog 3 [Mus musculus] gi|81902682|sp|Q924H5|RA51C_MOUSE RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3; AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like protein 2 gi|14276845|gb|AAK58420.1|AF324883_1 RAD51L2/RAD51C protein [Mus musculus] gi|56205736|emb|CAI24486.1| Rad51 homolog c (S. cerevisiae) [Mus musculus] gi|56800429|emb|CAI35963.1| Rad51 homolog c (S. cerevisiae) [Mus musculus] gi|60422796|gb|AAH90648.1| RAD51 homolog c (S. cerevisiae) [Mus musculus] gi|148683867|gb|EDL15814.1| Rad51 homolog c (S. cerevisiae), isoform CRA_b [Mus musculus] Length = 366 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGI 420 LVA GF E++ VK SE++ G +E A+E +Q RE L Sbjct: 18 LVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63 >gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] Length = 331 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 26/153 (16%) Query: 341 IITEEEDSINRQKDFNERTQFFMQA------INV------DEIIAHLLVA-----EGFAD 383 +++E+E + F Q ++ + + DE++ + F Sbjct: 174 VMSEQELTEAVNNAFGYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYS 233 Query: 384 VEE--LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE--LCS 439 EE A + + E EE I+ AR+ + + +I + L + Sbjct: 234 YEEKYSADSVSTTMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSEDNEILLN 293 Query: 440 ----IPGIDS-KIKVALGENGIKTMEDLAGCSV 467 PG+ + + E+ +T D ++ Sbjct: 294 EINTFPGMTPISMFPKMLEHNGQTFADFIEQAI 326 >gi|302381901|ref|YP_003817724.1| ribosomal protein S1 [Brevundimonas subvibrioides ATCC 15264] gi|302192529|gb|ADL00101.1| ribosomal protein S1 [Brevundimonas subvibrioides ATCC 15264] Length = 567 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVKSYIYDVRR 191 G+++ G V +E +I+D+G ++G I E E + GD V+ Y+ V Sbjct: 27 EGQVVHGRVVGIEKDILIIDVGLKTEGRISIREFAVGEGSVVPKVGDNVEVYLERVEN 84 >gi|242373783|ref|ZP_04819357.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1] gi|242348520|gb|EES40122.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1] Length = 399 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDET------ISRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 21 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIESPSEVVKVGDEVEAYVTK 80 Query: 189 VRREQ 193 + ++ Sbjct: 81 IEFDE 85 >gi|195435520|ref|XP_002065728.1| GK20010 [Drosophila willistoni] gi|194161813|gb|EDW76714.1| GK20010 [Drosophila willistoni] Length = 1063 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 373 AHLLVAEGFADVEELACV-KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIREL 431 A L A GF +E++A I+ + S+E + A EI A+ L L+++ L Sbjct: 995 AKQLFAAGFKSIEDIAKTHPINLVKSVEHMPLKVATEIISAAKIILMKKLDHLEEETENL 1054 Query: 432 GV 433 V Sbjct: 1055 KV 1056 >gi|209551601|ref|YP_002283518.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537357|gb|ACI57292.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 567 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVDGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|116249872|ref|YP_765710.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. viciae 3841] gi|241207043|ref|YP_002978139.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254520|emb|CAK05594.1| putative 30S ribosomal protein S1 [Rhizobium leguminosarum bv. viciae 3841] gi|240860933|gb|ACS58600.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 567 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVDGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|190156|gb|AAA60133.1| beta-polymerase [Homo sapiens] Length = 335 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|78212108|ref|YP_380887.1| hypothetical protein Syncc9605_0558 [Synechococcus sp. CC9605] gi|78196567|gb|ABB34332.1| hypothetical protein Syncc9605_0558 [Synechococcus sp. CC9605] Length = 266 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 A L+ G+ +++ +E+ ++G T I+ R Sbjct: 216 ARCLIDAGYTSPQKVRDASDAELLQVKGIGSITVKRIRER 255 >gi|314932539|gb|ADT64454.1| DNA polymerase beta [Ailurus fulgens] Length = 313 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 47 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 102 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 103 KFVDEGIKTLEDL 115 >gi|212218847|ref|YP_002305634.1| 30S ribosomal protein S1 [Coxiella burnetii CbuK_Q154] gi|212013109|gb|ACJ20489.1| SSU ribosomal protein S1P [Coxiella burnetii CbuK_Q154] Length = 555 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP + + MD R V +++ +++ AER + E + G+ I G + Sbjct: 142 RDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEEL--QEGQEIKGVI 199 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + + L GD V + R+++ Sbjct: 200 KNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKK 253 >gi|125536708|gb|EAY83196.1| hypothetical protein OsI_38408 [Oryza sativa Indica Group] Length = 294 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 18/50 (36%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +QA + + L G VE + ++ I+G E +I Sbjct: 31 LQASGIAALDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIEA 80 >gi|157827436|ref|YP_001496500.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389] gi|157802740|gb|ABV79463.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389] Length = 572 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD + +++ I+++ R RD K K G I+ GTVK + +DL Sbjct: 170 FKILSMDKKLGNIVVSRRAILEESRSEARDEMLS--KIKEGMILEGTVKNITDYGAFIDL 227 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 G+ DG++ + E L +VK + E + + Sbjct: 228 GSVDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISL 273 >gi|297682785|ref|XP_002819090.1| PREDICTED: DNA polymerase beta-like [Pongo abelii] Length = 335 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|197103656|ref|YP_002129033.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1] gi|196477076|gb|ACG76604.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1] Length = 569 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDG-VIRRDETISREN---LRPGDRVKSYIYDVRR 191 G+++ G V +E IVD+G ++G V+ ++ T E+ L+ GD V+ ++ V Sbjct: 28 MEGQVVHGKVVAIEKDFAIVDVGLKTEGRVLLKEFTQPGEDKPPLKAGDTVEVFLERVEN 87 Query: 192 EQRGPQVLLSR 202 + SR Sbjct: 88 AMGEAVI--SR 96 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 R + +++ I+++ R +R + + GE+ G VK + VDLG DG++ Sbjct: 173 RGNIVVSRRAILEEARAEQRTELVSQL--QEGEVREGVVKNITDYGAFVDLGGIDGLLHV 230 Query: 168 DETI------SRENLRPGDRVKSYIYDVRREQ 193 + + L GD VK I + E Sbjct: 231 TDMSWKRVNHPSQVLAVGDTVKVQIVKINPET 262 >gi|62898806|dbj|BAD97257.1| polymerase (DNA directed), beta variant [Homo sapiens] Length = 335 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|225626575|ref|ZP_03784614.1| ribosomal protein S1 [Brucella ceti str. Cudo] gi|294851434|ref|ZP_06792107.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026] gi|17983961|gb|AAL53096.1| ssu ribosomal protein s1p [Brucella melitensis bv. 1 str. 16M] gi|225618232|gb|EEH15275.1| ribosomal protein S1 [Brucella ceti str. Cudo] gi|294820023|gb|EFG37022.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026] Length = 576 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 85 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 144 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 145 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 199 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 200 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 257 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 258 KVQIIRINQET 268 >gi|67594825|ref|XP_665902.1| Rad51 [Cryptosporidium hominis TU502] gi|54656768|gb|EAL35671.1| Rad51 [Cryptosporidium hominis] Length = 347 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +L G+ +E LA + S++G E+ +I+ +E Sbjct: 45 EILRENGYHTIECLAYAPKKALLSVKGISEQKCDKIKSACKE 86 >gi|66357650|ref|XP_626003.1| Rad51 [Cryptosporidium parvum Iowa II] gi|46227223|gb|EAK88173.1| Rad51 [Cryptosporidium parvum Iowa II] Length = 347 Score = 38.1 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +L G+ +E LA + S++G E+ +I+ +E Sbjct: 45 EILRENGYHTIECLAYAPKKALLSVKGISEQKCDKIKSACKE 86 >gi|320334469|ref|YP_004171180.1| UvrABC system protein C [Deinococcus maricopensis DSM 21211] gi|319755758|gb|ADV67515.1| UvrABC system protein C [Deinococcus maricopensis DSM 21211] Length = 633 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RARE 415 F + + L+ F+ +E+LA + +IA + G + A ++ +ARE Sbjct: 570 RSVFDDLPGIGQKRQDALLEH-FSSLEDLASASVEDIARVPGMNARAAQAVKAFLQARE 627 >gi|265990396|ref|ZP_06102953.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1] gi|263001105|gb|EEZ13755.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1] Length = 499 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 8 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 67 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 68 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 122 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 123 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 180 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 181 KVQIIRINQET 191 >gi|255526510|ref|ZP_05393420.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|296185879|ref|ZP_06854285.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7] gi|255509829|gb|EET86159.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|296049547|gb|EFG88975.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7] Length = 388 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 10/132 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+SL D IG ++ + D + V +++VI + E ++ Sbjct: 142 PASQLSLSYVEDLKSF--IGKTLTVKVIEFDKDKEKVVLSRKVIEKAEAEEKKQHLLNSI 199 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K GE SG V R+ VDLG DG+I E + + GD+V+ YI Sbjct: 200 KP--GEKRSGVVSRLAKFGAFVDLGGVDGLIHVSELSWKRVNNPADVVSVGDKVEVYILS 257 Query: 189 VRREQRGPQVLL 200 V +E + L Sbjct: 258 VDKENNKIALAL 269 >gi|229597882|pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And Dtmp(Cf2)pp Length = 326 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 48 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 103 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 104 KFVDEGIKTLEDL 116 >gi|195118310|ref|XP_002003683.1| GI21571 [Drosophila mojavensis] gi|193914258|gb|EDW13125.1| GI21571 [Drosophila mojavensis] Length = 575 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++V + + L IGR G N++L + TG I Sbjct: 69 KIVVDNDHVPLIIGRGGANIKLIEEKTGAKI 99 >gi|156053229|ref|XP_001592541.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980] gi|154704560|gb|EDO04299.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980 UF-70] Length = 349 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++V G+ VE +A + I+G E+ A +I A + Sbjct: 40 IQMIVDGGYNTVESVAYTPRRILEQIKGISEQKATKILTEASK 82 >gi|84579323|dbj|BAE73095.1| hypothetical protein [Macaca fascicularis] Length = 335 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|4505931|ref|NP_002681.1| DNA polymerase beta [Homo sapiens] gi|114619950|ref|XP_001143904.1| PREDICTED: DNA polymerase beta isoform 3 [Pan troglodytes] gi|332241022|ref|XP_003269687.1| PREDICTED: DNA polymerase beta [Nomascus leucogenys] gi|544186|sp|P06746|DPOLB_HUMAN RecName: Full=DNA polymerase beta gi|1943095|pdb|9ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp (1 Millimolar) And Zncl2 (1 Millimolar) gi|1943098|pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp (1 Millimolar) And Zncl2 (1 Millimolar) gi|1943101|pdb|9ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp (1 Millimolar) And Zncl2 (1 Millimolar) gi|1943104|pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna gi|1943107|pdb|9ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Artificial Mother Liquor gi|1943110|pdb|9ICL|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Pyrophosphate And Mncl2 gi|1943113|pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate) gi|1943116|pdb|9ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked In The Presence Of Ddctp And Mgcl2 gi|1943119|pdb|9ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Dttp And Mgcl2 gi|1943122|pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar) gi|1943125|pdb|9ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943128|pdb|9ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxycytidine-5'-Triphosphate, Soaked In The Presence Of Dctp And Mncl2 gi|1943131|pdb|9ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked In The Presence Of Ddctp And Mncl2 gi|1943134|pdb|9ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxyguanosine-5'-Triphosphate, Soaked In The Presence Of Dgtp And Mncl2 gi|1943137|pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943140|pdb|9ICV|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxyadenosine-5'-Triphosphate, Soaked In The Presence Of Datp And Zncl2 gi|1943143|pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Native Structure gi|1943146|pdb|9ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna (Non Gapped Dna Only) gi|1943149|pdb|9ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna (Non Gapped Dna Only) gi|1943152|pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Artificial Mother Liquor gi|1943155|pdb|8ICC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna (No 5'-Phosphate) gi|1943158|pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Cdcl2 (1 Millimolar) gi|1943161|pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (10 Millimolar) And Mgcl2 (50 Millimolar) gi|1943164|pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Mgcl2 (5 Millimolar) gi|1943167|pdb|8ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp (1 Millimolar) And Mgcl2 (5 Millimolar) gi|1943170|pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp (1 Millimolar) And Mgcl2 (5 Millimolar) gi|1943173|pdb|8ICJ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE- 5'-Triphosphate, Soaked In The Presence Of Dttp And Mgcl2 gi|1943176|pdb|8ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5 Millimolar) gi|1943179|pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Nicl2 (5 Millimolar) gi|1943182|pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar), Mncl2 (5 Millimolar), And Ammonium Sulfate (75 Millimolar) gi|1943185|pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Atp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943188|pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943191|pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943194|pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Of Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar) gi|1943197|pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943200|pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943203|pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943206|pdb|8ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943209|pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943212|pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943215|pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp (1 Millimolar) And Mncl2 (5 Millimolar) gi|1943218|pdb|8ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE- 5'-Triphosphate, Soaked In The Presence Of Dttp And Mncl2 gi|1943221|pdb|8ICZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Of Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium Sulfate (75 Millimolar) gi|1943224|pdb|9ICA|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxyadenosine-5'-O-(1-Thiotriphosphate), Soaked In The Presence Of Datp(Alpha)s And Mncl2 gi|1943227|pdb|9ICB|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxyadenosine-5'-Triphosphate, Soaked In The Presence Of Datp And Cocl2 gi|1943230|pdb|9ICC|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxyadenosine-5'-Triphosphate, Soaked In The Presence Of Datp And Crcl3 gi|1943233|pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Cucl2 (0.1 Millimolar) gi|1943236|pdb|9ICF|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'- Deoxyadenosine-5'-Triphosphate, Soaked In The Presence Of Datp And Zncl2 gi|1943239|pdb|1ZQQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2 (15 Millimolar) And Nacl (15 Millimolar) gi|1943242|pdb|1ZQR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Nicl2 gi|1943245|pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl (0.5 Millimolar) gi|1943248|pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (0.01 Millimolar) And Zncl2 (0.02 Millimolar) gi|1943257|pdb|7ICE|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Cacl2 gi|1943260|pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2 (0.1 Millimolar) (Four-Day Soak) gi|1943263|pdb|7ICG|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Cdcl2 gi|1943266|pdb|7ICH|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Cocl2 gi|1943269|pdb|7ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3 (0.1 Millimolar) gi|1943272|pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2 (0.1 Millimolar) gi|1943275|pdb|7ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Mgcl2 gi|1943278|pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2 (0.1 Millimolar) gi|1943281|pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2 (1.0 Millimolar) gi|1943284|pdb|7ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Nicl2 gi|1943287|pdb|7ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Zncl2 gi|1943290|pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2 (0.01 Millimolar) gi|1943293|pdb|7ICQ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Zncl2 gi|1943296|pdb|7ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Zncl2 gi|1943299|pdb|7ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Zncl2 gi|1943302|pdb|7ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN The Presence Of Zncl2 And Mgcl2 gi|1943305|pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2 (0.1 Millimolar) gi|1943308|pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2 (0.1 Millimolar) And In The Absence Of Nacl gi|1943311|pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Datp (1 Millimolar) And Cacl2 (5 Millimolar) gi|1943315|pdb|1ZQA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl (150 Millimolar) At Ph 7.5 gi|1943318|pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2 (150 Millimolar) gi|1943321|pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2 (15 Millimolar) gi|1943324|pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2 (150 Millimolar) gi|1943327|pdb|1ZQE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3 (Saturated Solution) gi|1943330|pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl (150 Millimolar) gi|1943333|pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of A Sodium-Free Artificial Mother Liquor At Ph 6.5 gi|1943336|pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of A Sodium-Free Artificial Mother Liquor At Ph 7.5 gi|1943339|pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl (150 Millimolar) gi|1943342|pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2 (15 Millimolar) And Mgcl2 (15 Millimolar) gi|1943345|pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl (75 Millimolar) And Mgcl2 (75 Millimolar) gi|1943348|pdb|1ZQL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2 (15 Millimolar) And Mgcl2 (15 Millimolar) gi|1943351|pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2 (15 Millimolar) gi|1943354|pdb|1ZQN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2 (15 Millimolar) And Nacl (15 Millimolar) gi|1943357|pdb|1ZQO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2 (15 Millimolar) And Nacl (15 Millimolar) gi|1943360|pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl (75 Millimolar) And Nacl (75 Millimolar) gi|2392196|pdb|1BPX|A Chain A, Dna Polymerase BetaDNA COMPLEX gi|2392200|pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And Ddctp gi|2392204|pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna gi|28373759|pdb|1MQ2|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna Containing An 8-Oxo-7,8-Dihydro-Guanine And Damp gi|28373763|pdb|1MQ3|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna Containing An 8-Oxo-7,8-Dihydro-Guanine Template Paired With Dctp gi|56966095|pdb|1TV9|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna Containing A Mismatched Template Adenine And Incoming Cytidine gi|56966099|pdb|1TVA|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna Containing A Mismatched Template Thymidine And Incoming Cytidine gi|75765763|pdb|1ZJM|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An A-A Mismatched Primer Terminus gi|75765767|pdb|1ZJN|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An A-A Mismatched Primer Terminus With Dgtp gi|99032272|pdb|2FMP|A Chain A, Dna Polymerase Beta With A Terminated Gapped Dna Substrate And Ddctp With Sodium In The Catalytic Site gi|99032273|pdb|2FMQ|A Chain A, Sodium In Active Site Of Dna Polymerase Beta gi|99032277|pdb|2FMS|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And Dumpnpp With Magnesium In The Catalytic Site gi|118138264|pdb|2I9G|A Chain A, Dna Polymerase Beta With A Benzo[c]phenanthrene Diol Epoxide Adducted Guanine Base gi|126030823|pdb|2ISO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma- Difluoromethylene Triphosphate gi|126030827|pdb|2ISP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma- Methylene Triphosphate gi|146387680|pdb|2P66|A Chain A, Human Dna Polymerase Beta Complexed With Tetrahydrofuran (Abasic Site) Containing Dna gi|164519479|pdb|2PXI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma- Monofluoromethylene Triphosphate gi|188595971|pdb|3C2K|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And Dumpnpp With Manganese In The Active Site gi|188595975|pdb|3C2L|A Chain A, Ternary Complex Of Dna Polymerase Beta With A C:dapcpp Mismatch In The Active Site gi|188595979|pdb|3C2M|A Chain A, Ternary Complex Of Dna Polymerase Beta With A G:dapcpp Mismatch In The Active Site gi|258588692|pdb|3ISB|A Chain A, Binary Complex Of Human Dna Polymerase Beta With A Gapped Dna gi|258588696|pdb|3ISC|A Chain A, Binary Complex Of Human Dna Polymerase Beta With An Abasic Site (Thf) In The Gapped Dna gi|258588700|pdb|3ISD|A Chain A, Ternary Complex Of Human Dna Polymerase Beta With An Abasic Site (Thf): Dapcpp Mismatch gi|297342962|pdb|3JPN|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Dichloro Methyl Triphosphate gi|297342966|pdb|3JPO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Monochloromethy Triphosphate gi|297342970|pdb|3JPP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Monomethyl Meth Triphosphate gi|297342974|pdb|3JPQ|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Monobromo Methy Triphosphate gi|297342978|pdb|3JPR|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Dimethyl Methyl Triphosphate gi|297342982|pdb|3JPS|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Fluoro Methyl M Triphosphate gi|297342986|pdb|3JPT|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy Termin Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-Fluoro Chloro M Triphosphate gi|297787720|pdb|3MBY|A Chain A, Ternary Complex Of Dna Polymerase Beta With Template Base A And 8oxodgtp In The Active Site With A Dideoxy Terminated Primer gi|317455186|pdb|3LK9|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And Dtmp(Cf2)p(Cf2)p gi|19550959|gb|AAL91594.1|AF491812_1 DNA polymerase beta [Homo sapiens] gi|292397|gb|AAB59441.1| beta-polymerase [Homo sapiens] gi|1060896|dbj|BAA06099.1| DNA polymerase beta [Homo sapiens] gi|49168492|emb|CAG38741.1| POLB [Homo sapiens] gi|49456561|emb|CAG46601.1| POLB [Homo sapiens] gi|71682446|gb|AAI00289.1| Polymerase (DNA directed), beta [Homo sapiens] gi|76827621|gb|AAI06910.1| Polymerase (DNA directed), beta [Homo sapiens] gi|119583625|gb|EAW63221.1| polymerase (DNA directed), beta [Homo sapiens] gi|189054625|dbj|BAG37475.1| unnamed protein product [Homo sapiens] gi|208967076|dbj|BAG73552.1| polymerase (DNA directed) beta [synthetic construct] Length = 335 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|269101014|ref|YP_003289162.1| 30S ribosomal protein S1 [Ectocarpus siliculosus] gi|266631522|emb|CAV31193.1| Chloroplast 30S ribosomal protein S1 [Ectocarpus siliculosus] gi|270118652|emb|CAT18703.1| Chloroplast 30S ribosomal protein S1 [Ectocarpus siliculosus] Length = 265 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYI 186 +K K +I++G + VE V+VDLG + E E L + I Sbjct: 24 YKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNVNYVGEFLI 83 Query: 187 YDVRREQRGPQVLLS 201 D+ ++ ++++S Sbjct: 84 LDINKKSN--RIIIS 96 >gi|90020613|ref|YP_526440.1| 30S ribosomal protein S3 [Saccharophagus degradans 2-40] gi|123396486|sp|Q21M51|RS3_SACD2 RecName: Full=30S ribosomal protein S3 gi|89950213|gb|ABD80228.1| SSU ribosomal protein S3P [Saccharophagus degradans 2-40] Length = 224 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNV-RLASQLT 335 ++ NAL A V+++ ++ V + + + IG++G++V +L ++LT Sbjct: 41 KYIQNALAHASVSRIDIERPANTARVTIHTARPGIVIGKKGEDVEKLRTELT 92 >gi|169781702|ref|XP_001825314.1| DNA repair protein rhp51 [Aspergillus oryzae RIB40] gi|238498508|ref|XP_002380489.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357] gi|83774056|dbj|BAE64181.1| unnamed protein product [Aspergillus oryzae] gi|220693763|gb|EED50108.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357] Length = 348 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAR 414 L V G+ VE +A + I+G E+ A + + A+ Sbjct: 39 IKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKVLVEAAK 81 >gi|20067703|emb|CAD29093.1| chimeric DNA-directed DNA polymerase bf4-20 [synthetic construct] Length = 331 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|157830425|pdb|1BPE|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta; Evidence For A Common Polymerase Mechanism Length = 335 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRRDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|308183158|ref|YP_003927285.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4] gi|308065343|gb|ADO07235.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4] Length = 552 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%) Query: 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + DP I P + + + Q Q I K+ E + II G Sbjct: 74 QKNDPIIVHVSE-KGEHPSVSYKKAISQ---QKIQAKIEELGEN--------YENAIIEG 121 Query: 145 TVKRVEYGNVIVDLGNSDGVIRR-DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + G IV+ + + R ++ + G R+K+ I V +E + +SR Sbjct: 122 KIVGKNKGGYIVESQGVEYFLSRSRSSLKNDANHIGKRIKACIIHVDKENH--SINISR 178 >gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] Length = 665 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E A +L + F ++ L+ E+ SIEG E A I + I + Sbjct: 517 VGEKTAKILADK-FKSIKALSQASYDELTSIEGIGPEVAKNIIEYFKNEKTKEIIRKLEN 575 Query: 428 IR-ELGVSEE 436 +L E+ Sbjct: 576 AGVKLEQEED 585 >gi|183220249|ref|YP_001838245.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910367|ref|YP_001961922.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775043|gb|ABZ93344.1| 30S Ribosomal protein S1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778671|gb|ABZ96969.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 385 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSD-GVIRRDET-IS-----RENLRPGDRVKSYIYDV 189 K +I+SGTV+ ++ + V LG G++ E+ + +PG +++ ++ ++ Sbjct: 272 KESDIVSGTVESIKPFGLFVRLGEDFSGLVPNKESGVPQRTPLNTVFQPGQKLEVFVLEI 331 Query: 190 RREQRGPQVLLS 201 E+R Q+ LS Sbjct: 332 NPEKR--QIALS 341 >gi|126727656|ref|ZP_01743488.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2150] gi|126703072|gb|EBA02173.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2150] Length = 552 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 D R + +++ I+++ R +R + G+ + G VK + VDLG DG+ Sbjct: 159 DRRRGNIVVSRRAILEESRAEQRAEVIGKLA--EGDAVDGVVKNITEYGAFVDLGGVDGL 216 Query: 165 IRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 + + E L G+ VK + + +E Sbjct: 217 LHVTDMAWRRVNHPNEILNIGETVKVQVIKINKET 251 >gi|20067675|emb|CAD29079.1| chimeric DNA-directed DNA polymerase bf4-1 [synthetic construct] Length = 325 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|20067711|emb|CAD29097.1| chimeric DNA-directed DNA polymerase bf2-7a [synthetic construct] Length = 320 Score = 38.1 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|302871872|ref|YP_003840508.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor obsidiansis OB47] gi|302574731|gb|ADL42522.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor obsidiansis OB47] Length = 663 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR------ENLRPGDRVKSYIYD 188 GE++ G + +VE V+VD+G ++G+I +DE I + + G+ +++ + Sbjct: 305 GEVVKGRIIKVEEDYVLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGETIEAVVIK 361 >gi|262066813|ref|ZP_06026425.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium periodonticum ATCC 33693] gi|291379479|gb|EFE86997.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium periodonticum ATCC 33693] Length = 827 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%) Query: 86 DRDPSIDIGGVVSDPLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + P +IG V + +D R S K +R++ + E+K VG + Sbjct: 686 EETPKFEIGNEVELKITELDLNDRKIKGSLKA-----LRKSPWEHAMEEYK--VGTTVEK 738 Query: 145 TVKRVEYGNVIVDLGN-SDGVIR----RDETIS--RENLRPGDRVKSYIYDVRREQRGPQ 197 +K V + V+L DG I E I R+ GD VK+ + +V +E + + Sbjct: 739 KIKTVADFGLFVELTKGIDGFIPTQFASKEFIKNIRDKFNEGDVVKAQVVEVNKETQKIK 798 Query: 198 V 198 + Sbjct: 799 L 799 >gi|194334594|ref|YP_002016454.1| 30S ribosomal protein S1 [Prosthecochloris aestuarii DSM 271] gi|194312412|gb|ACF46807.1| RNA binding S1 domain protein [Prosthecochloris aestuarii DSM 271] Length = 588 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 EI+ G + + +V +D+G S+G++ + E + L+ GD V+ Y+ ++ + Sbjct: 49 EEEIVKGRIVGISNKDVTIDVGYKSEGIVSKLEFRDEDELKVGDEVEVYLENIEDKMG-- 106 Query: 197 QVLLS 201 Q++LS Sbjct: 107 QLILS 111 >gi|194750315|ref|XP_001957573.1| GF23962 [Drosophila ananassae] gi|190624855|gb|EDV40379.1| GF23962 [Drosophila ananassae] Length = 1049 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 373 AHLLVAEGFADVEELACVKISEIA-SIEGFDEETAVEIQGRAREYLEGIDITLQKKIREL 431 A L A GF +E++A + + S+E A EI A+ L L+++ L Sbjct: 983 AKQLYAAGFRTIEDIARIPAMTLVQSVEHMPLRVATEIVSAAKIILMKKLDHLEEETENL 1042 Query: 432 GV 433 V Sbjct: 1043 KV 1044 >gi|161831346|ref|YP_001596460.1| 30S ribosomal protein S1 [Coxiella burnetii RSA 331] gi|81629367|sp|Q83E09|RS1_COXBU RecName: Full=30S ribosomal protein S1 gi|161763213|gb|ABX78855.1| ribosomal protein S1 [Coxiella burnetii RSA 331] Length = 551 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP + + MD R V +++ +++ AER + E + G+ I G + Sbjct: 138 RDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEEL--QEGQEIKGVI 195 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + + L GD V + R+++ Sbjct: 196 KNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKK 249 >gi|57867003|ref|YP_188621.1| 30S ribosomal protein S1 [Staphylococcus epidermidis RP62A] gi|251810898|ref|ZP_04825371.1| 30S ribosomal protein S1 [Staphylococcus epidermidis BCM-HMP0060] gi|282876092|ref|ZP_06284959.1| 30S ribosomal protein S1 [Staphylococcus epidermidis SK135] gi|293366557|ref|ZP_06613234.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W2(grey)] gi|81674533|sp|Q5HP69|RS1_STAEQ RecName: Full=30S ribosomal protein S1 gi|57637661|gb|AAW54449.1| ribosomal protein S1 [Staphylococcus epidermidis RP62A] gi|251805578|gb|EES58235.1| 30S ribosomal protein S1 [Staphylococcus epidermidis BCM-HMP0060] gi|281295117|gb|EFA87644.1| 30S ribosomal protein S1 [Staphylococcus epidermidis SK135] gi|291319326|gb|EFE59695.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W2(grey)] gi|329737469|gb|EGG73723.1| putative ribosomal protein S1 [Staphylococcus epidermidis VCU028] Length = 392 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 >gi|148264610|ref|YP_001231316.1| hypothetical protein Gura_2565 [Geobacter uraniireducens Rf4] gi|146398110|gb|ABQ26743.1| hypothetical protein Gura_2565 [Geobacter uraniireducens Rf4] Length = 174 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + + + V I+A + G+ ++A + +I+G + I +A Sbjct: 1 MKQAMKELQKLKGVGNILAQRFIEAGYDTFAKIAAAGEEGLRNIQGLNPRMVPSILTQAV 60 Query: 415 EYLEGIDITLQKKIRELG 432 E T +K+ EL Sbjct: 61 ELAGEAGKTRAEKVEELK 78 >gi|322367962|ref|ZP_08042531.1| Sec-independent periplasmic protein translocase [Haladaptatus paucihalophilus DX253] gi|320551978|gb|EFW93623.1| Sec-independent periplasmic protein translocase [Haladaptatus paucihalophilus DX253] Length = 602 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 14/116 (12%) Query: 366 INVD---EIIAHLLVAEGFADV-----EELACVKISEIA--SIEGFDEETAVEIQGRARE 415 I VD EI L A G + LA + E+A +++ D E A I R Sbjct: 242 IGVDRPGEIDLSSLDASGIRSAPPETFDSLAEHEALELADTALDSGDHERAAAILDRFDA 301 Query: 416 YLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 + D +++ E + ++ G +++ E KT +D+ G D Sbjct: 302 ANDNGDDEAEERTSESEADDGNGLTTAVEGTTARMASVFTEEE-KTEDDIGGYYYD 356 >gi|314933658|ref|ZP_07841023.1| ribosomal protein S1 [Staphylococcus caprae C87] gi|313653808|gb|EFS17565.1| ribosomal protein S1 [Staphylococcus caprae C87] Length = 392 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 >gi|237738428|ref|ZP_04568909.1| S1 RNA-binding domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229420308|gb|EEO35355.1| S1 RNA-binding domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 284 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 137 KVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K +I+SGTV R+ V V + + G+I ++E N + GD +++ + VR + + Sbjct: 147 KKNDIVSGTVYRLNDEIGVFVAVEDRYFGLIPKNEYFK--NYKIGDEIEARVIRVREDGK 204 >gi|260797338|ref|XP_002593660.1| hypothetical protein BRAFLDRAFT_131952 [Branchiostoma floridae] gi|229278887|gb|EEN49671.1| hypothetical protein BRAFLDRAFT_131952 [Branchiostoma floridae] Length = 3505 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 19/176 (10%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D+ +D +R + Q + VD IA +A G+ ELA ++ + ++ Sbjct: 2182 DLKKAVQDLKDRMDRLPDEMQGDLNVYRVDIPIAQERMARGYT---ELAVMEAR-MDALP 2237 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS-EELCSIPGI------DSKIKVALG 452 G + A ++Q RA E + + + ++ L + L + G D+ + Sbjct: 2238 GNLGDAAKDVQDRAIEA-DNVAQGVIDEVDGLEPDVDALVNQVGGAGSASGDTNAAIRAA 2296 Query: 453 ENGIKT-------MEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESM 501 E ++T ++DLA D+ + + + Q ++ Sbjct: 2297 ERDLRTVSRNLGDLKDLADDLNDEARNVRALNDQFSRNLTDLMEKIKQARQQANTI 2352 >gi|194217198|ref|XP_001500693.2| PREDICTED: similar to RAD51 homolog C [Equus caballus] Length = 419 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGI 420 LV+ GF EEL VK SE++ G +E A+E +Q RE L Sbjct: 66 LVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIVRRECLTNK 111 >gi|167748600|ref|ZP_02420727.1| hypothetical protein ANACAC_03373 [Anaerostipes caccae DSM 14662] gi|167651914|gb|EDR96043.1| hypothetical protein ANACAC_03373 [Anaerostipes caccae DSM 14662] Length = 140 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDL 462 EE A ++ + + ++K S++L ++PGI +I L GI ++DL Sbjct: 30 EENAAGLRVQINN---LKEFEKRQKQENSSGSQDLQTVPGIGKRIAQHLNAIGIYCVDDL 86 Query: 463 AGCSVDDLLGWSENKGGNIEKFDGF 487 G ++L + G E Sbjct: 87 KGRDPEELYRMDCIQKGFTEDRCEL 111 >gi|551677|gb|AAB60688.1| DNA polymerase beta [Homo sapiens] Length = 335 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|86355758|ref|YP_467650.1| 30S ribosomal protein S1 [Rhizobium etli CFN 42] gi|86279860|gb|ABC88923.1| 30S ribosomal protein S1 [Rhizobium etli CFN 42] Length = 567 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVDGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|260824523|ref|XP_002607217.1| hypothetical protein BRAFLDRAFT_67985 [Branchiostoma floridae] gi|229292563|gb|EEN63227.1| hypothetical protein BRAFLDRAFT_67985 [Branchiostoma floridae] Length = 1764 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 43/229 (18%) Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG----WTIDIITEEED-----SINRQ 352 +E + +++ K L Q++R LT W I ++ D I Sbjct: 1350 EEATKEVSLVLNKIDRRL------QDIR---DLTDIRDPWDIRDPSDTRDLSNIRDIPEP 1400 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL----ACV-KISEIASIEGFDEETAV 407 F E + + E I ++L +EE+ A V + +E ++G +E + Sbjct: 1401 DRFEETSDLHDPQPDRMEEIRNVL-EADLDMLEEIRNFQADVLEENEGLELDGLEEGEGL 1459 Query: 408 EI------------QGRAREYLEGIDITLQKKIRELGVSEEL-CSIPGIDSKI---KVAL 451 ++ + + E LE + + + G E+ + G++ L Sbjct: 1460 DLDGLEEDEGLKHDRFQEDESLEFDGQEIDEGLELDGQEEDENRELNGLEEDKSPNLNGL 1519 Query: 452 GENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVES 500 E+ ++ L +L G E+ G + DG G D +E Sbjct: 1520 EEDEGFELDGLEEDEGFELDGLEEDGGLEL---DGLEEDGGLELDGLEE 1565 >gi|329765876|ref|ZP_08257442.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137719|gb|EGG41989.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 709 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 338 TIDIITEEEDSINR-QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 ID++ E ++ R E ++ + I A +L G +++LA + ++++A Sbjct: 628 RIDLLDELDNLRRRITYGIREELLDLVKVKGIGRIRARMLYKHGIKTLDDLANIPVNKLA 687 Query: 397 SIEGFDEETAVEIQGRAREY 416 I+ A I+ R+ Sbjct: 688 EIDKIGSTIADNIKSELRKV 707 >gi|313115242|ref|ZP_07800722.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622435|gb|EFQ05910.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Faecalibacterium cf. prausnitzii KLE1255] Length = 636 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 VG+ +G VK + VD+G DG+ E E + GD ++ Y+ D+ Sbjct: 473 VGKTYTGVVKSLTSYGAFVDIGGVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDIDT 532 Query: 192 EQ 193 E Sbjct: 533 EN 534 >gi|292656668|ref|YP_003536565.1| 50S ribosomal protein L32.eR [Haloferax volcanii DS2] gi|291371315|gb|ADE03542.1| ribosomal protein L32.eR [Haloferax volcanii DS2] Length = 235 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +E V A L GF V+++ SE+A ++G A I+ Sbjct: 1 MSEEITELEDISGVGPSKADALREAGFESVDDVQAASQSELAEVDGIGNALAARIKA 57 >gi|222617117|gb|EEE53249.1| hypothetical protein OsJ_36165 [Oryza sativa Japonica Group] Length = 292 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +QA + + L G VE + ++ I+G E +I Sbjct: 31 LQASGIAALDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIE 79 >gi|134295079|ref|YP_001118814.1| 30S ribosomal protein S1 [Burkholderia vietnamiensis G4] gi|134138236|gb|ABO53979.1| SSU ribosomal protein S1P [Burkholderia vietnamiensis G4] Length = 576 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ G VI G+ +G +R E R L+ GD+V + + ++ Sbjct: 465 KGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 524 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 525 RKSRG--INLS 533 Score = 37.4 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 157 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 214 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 215 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 268 >gi|254245991|ref|ZP_04939312.1| Ribosomal protein S1 [Burkholderia cenocepacia PC184] gi|124870767|gb|EAY62483.1| Ribosomal protein S1 [Burkholderia cenocepacia PC184] Length = 596 Score = 38.1 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 485 KGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 544 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 545 RKSRG--INLS 553 Score = 37.7 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 177 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 234 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 235 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 288 >gi|190889734|ref|YP_001976276.1| 30S ribosomal protein S1 [Rhizobium etli CIAT 652] gi|190695013|gb|ACE89098.1| 30S ribosomal protein S1 [Rhizobium etli CIAT 652] Length = 567 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ ++++ R +R + G+++ G VK + VDL Sbjct: 160 FEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE--EGQVVDGVVKNITDYGAFVDL 217 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G +VK I + +E Sbjct: 218 GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQET 258 >gi|60827766|gb|AAX36812.1| polymerase beta [synthetic construct] Length = 336 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403] gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11] gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris MG1363] gi|281491326|ref|YP_003353306.1| 50S ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147] gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403] gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11] gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris MG1363] gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147] gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris NZ9000] gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56] Length = 408 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 11/152 (7%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 E G ++ + VE V +I+ D + + G V+ + G+ A Sbjct: 28 ENGQATVAIVGTGVEGV-LTLREITNDKDADINTFVKPGDVLDLLVIKQIVGKEA--EGA 84 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175 V + ++ E + + + + K GEI++ V + G + VD G I I Sbjct: 85 NVYLLSLKRLEARKAWTQLEGKEGEIVTVKVTKDVKGGLSVDYNGVRGFIPAS-MIDTYF 143 Query: 176 LR-----PGDRVKSYIYDVRREQRGPQVLLSR 202 ++ G+ +++ I +V + + +LSR Sbjct: 144 VKDTKKFVGEEIEAKIIEVNASEN--RFILSR 173 Score = 37.0 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + G+I+ GTV RV VDLG DG++ E + ++PGD V I + Sbjct: 193 QEGDIVEGTVSRVTNFGAFVDLGGIDGLVHVSELSHSRIKRPSDAVKPGDVVNVKILKLD 252 Query: 191 REQ 193 E Sbjct: 253 PEA 255 >gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4] gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4] Length = 403 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + GE+++G V R+ VDLG DG++ E + L+PG+ V+ + V Sbjct: 201 QEGEVVTGKVARLTNFGAFVDLGGIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVD 260 Query: 191 REQ 193 E+ Sbjct: 261 PER 263 >gi|254713388|ref|ZP_05175199.1| 30S ribosomal protein S1 [Brucella ceti M644/93/1] gi|254716254|ref|ZP_05178065.1| 30S ribosomal protein S1 [Brucella ceti M13/05/1] gi|261218030|ref|ZP_05932311.1| ribosomal protein S1 [Brucella ceti M13/05/1] gi|261321120|ref|ZP_05960317.1| ribosomal protein S1 [Brucella ceti M644/93/1] gi|260923119|gb|EEX89687.1| ribosomal protein S1 [Brucella ceti M13/05/1] gi|261293810|gb|EEX97306.1| ribosomal protein S1 [Brucella ceti M644/93/1] Length = 566 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMHLPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|153007374|ref|YP_001368589.1| 30S ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188] gi|151559262|gb|ABS12760.1| ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188] Length = 566 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|295103120|emb|CBL00664.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [Faecalibacterium prausnitzii SL3/3] Length = 636 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 VG+ +G VK + VD+G DG+ E E + GD ++ Y+ D+ Sbjct: 473 VGKTYTGVVKSLTSYGAFVDIGGVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDIDT 532 Query: 192 EQ 193 E Sbjct: 533 EN 534 >gi|257094467|ref|YP_003168108.1| 30S ribosomal protein S1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046991|gb|ACV36179.1| ribosomal protein S1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 566 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + +D R V +++ +++ ERD K G I+ G V Sbjct: 148 KDTTPYEGKTYEFKVIKLDRKRNNVVVSRRAVLEASVGEERDALLAALK--EGSIVKGVV 205 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L GD V++ I +E+ Sbjct: 206 KNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLAVGDEVQAKILKFDQEKN 259 >gi|154314604|ref|XP_001556626.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10] gi|150848633|gb|EDN23826.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10] Length = 349 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++V G+ VE +A + I+G E+ A +I A + Sbjct: 40 IQMIVDGGYNTVESVAYTPRRILEQIKGISEQKATKILTEASK 82 >gi|110668724|ref|YP_658535.1| 50S ribosomal protein L32e [Haloquadratum walsbyi DSM 16790] gi|109626471|emb|CAJ52932.1| ribosomal protein L32.eR [Haloquadratum walsbyi DSM 16790] Length = 317 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%) Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 T+ + + + + + + F V A L G+ E++ S +A ++ Sbjct: 58 TDTDADTDSESEVTDDAEAFEDISGVGSDRAESLREAGYDSFEDIRAASQSALADVDDIG 117 Query: 403 EETAVEIQG 411 A I+ Sbjct: 118 NALAARIKA 126 >gi|91205227|ref|YP_537582.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C] gi|123388135|sp|Q1RJH1|RS1_RICBR RecName: Full=30S ribosomal protein S1 gi|91068771|gb|ABE04493.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C] Length = 572 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD + +++ I+++ R RD K K G I+ GTVK + +DL Sbjct: 170 FKILSMDKKLGNIVVSRRAILEESRSEARDEMLS--KIKEGMILEGTVKNITDYGAFIDL 227 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 G+ DG++ + E L +VK + E + + Sbjct: 228 GSVDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISL 273 >gi|551770|gb|AAA23167.1| 70 kDa ribosomal protein S1 [Chlamydia muridarum] Length = 180 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI-SRENLRPGDRVKSYIYDVRREQRGP 196 G I+ GTV + V+VD+G S+GVI E I S E L G V+ Y+ E+ Sbjct: 52 GAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFIDSSEGLSVGAEVEVYLDQTEDEEG-- 109 Query: 197 QVLLSR 202 +V+LSR Sbjct: 110 KVVLSR 115 >gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K] gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K] Length = 403 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 50/114 (43%), Gaps = 10/114 (8%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + +++ ++++ R+A+ + + G+I+ G V R+ Sbjct: 162 GQELELQIIEIEPSENRLILSRKALVEQERQAQLKAVFEKLLP--GDIVEGEVARLTNFG 219 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 VDLG DG++ E + L G VK I + +E+ ++ LS Sbjct: 220 AFVDLGGVDGLVHVSEISYDHINQPSDVLEVGQNVKVKILSLDQEKG--RISLS 271 >gi|20067701|emb|CAD29092.1| chimeric DNA-directed DNA polymerase bf4-19 [synthetic construct] Length = 329 Score = 38.1 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284] gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284] Length = 403 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 + GE+++G V R+ VDLG DG++ E + L+PG+ V+ + V Sbjct: 201 QEGEVVTGKVARLTNFGAFVDLGGIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVD 260 Query: 191 REQ 193 E+ Sbjct: 261 PER 263 >gi|331269557|ref|YP_004396049.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein [Clostridium botulinum BKT015925] gi|329126107|gb|AEB76052.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein [Clostridium botulinum BKT015925] Length = 634 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 +++ G ++R+ VD+ DG++ E + L+ G++VK I D+ + Sbjct: 476 KDQVVEGEIRRLTSFGAFVDVNGIDGLLHVSEISWGRVEKPEDVLKIGEKVKVCILDIDK 535 Query: 192 EQRG 195 E + Sbjct: 536 ENKK 539 >gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera] Length = 346 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 45/147 (30%) Query: 219 IYNGIVQVKAVSRDPGSRAK-------LAVFSSDSSIDPVGACVGMRGSRVQAVVTEL-- 269 I + +V R P RAK + V S +G +G GSR+Q + E Sbjct: 37 IASATGEVADDHRSPKRRAKNQDVLFRIVVPSRQ-----IGKVIGKEGSRIQKIREETKA 91 Query: 270 ----------RDEKIDIVVWSPDSATFVI---NALRPAIVTKVVLDED------------ 304 +E++ I++ S DS + NAL V ++L ED Sbjct: 92 TIKIADAIARHEERV-IIISSKDSENVISDAENALL--QVASLILKEDDSNTDALKVGVG 148 Query: 305 ---VGRIEVIVPKEQLSLAIGRRGQNV 328 I +++ Q IG GQN+ Sbjct: 149 HVVANAIRLLIAGSQAGCLIGMSGQNI 175 >gi|257437823|ref|ZP_05613578.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium prausnitzii A2-165] gi|257199746|gb|EEU98030.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium prausnitzii A2-165] Length = 636 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 VG+ +G VK + VD+G DG+ E E + GD ++ Y+ D+ Sbjct: 473 VGKTYTGVVKSLTSYGAFVDIGGVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDIDT 532 Query: 192 EQ 193 E Sbjct: 533 EN 534 >gi|225011942|ref|ZP_03702380.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-2A] gi|225004445|gb|EEG42417.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-2A] Length = 668 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 20/136 (14%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV+ + A D F Q +I K + Sbjct: 75 VVEEVKEPKVDVKAAQAEFLD----------------SFNWHNYQEGIDLIEDKQLDEFE 118 Query: 128 DRQYLEFKDKVGE-IISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 F D E +I G V + I+D+ S+GVI +E +L+ GD+V+ Sbjct: 119 KLVKENFVDTSDEDVIEGEVVYMTEREAIIDINAKSEGVISLNEFRYNPDLKVGDKVEV- 177 Query: 186 IYDVRREQRGPQVLLS 201 I D+R ++ G Q++LS Sbjct: 178 IVDIREDRTG-QLVLS 192 >gi|188527836|ref|YP_001910523.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470] gi|188144076|gb|ACD48493.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470] Length = 552 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 14/116 (12%) Query: 91 IDIGGVVSDPLPPM-DFGRVAVQSA--KQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 + + + V+ + A +Q I K+ E + II G + Sbjct: 73 YQKNDPIIVHVSEKGEHSSVSYKKAISQQKIQAKIEELGEN--------YENAIIEGKIV 124 Query: 148 RVEYGNVIVDLGNSDGVIRR-DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 G IV+ + + R ++ + G R+K+ I V +E + +SR Sbjct: 125 GKNKGGYIVESQGVEYFLSRSRSSLKNDANHIGKRIKACIIHVDKENH--SINISR 178 >gi|114683628|ref|XP_514833.2| PREDICTED: SAM domain-containing protein SAMSN-1 isoform 5 [Pan troglodytes] Length = 373 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 14/109 (12%) Query: 339 IDIITEEEDSINRQK-------DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +D+I+EEE + + K + ++ Q F++ I++ E + LL+ G+ +E+L +K Sbjct: 219 VDVISEEEAAPKKIKANRRSNSEKSKTLQEFLERIHLQEYTSTLLL-NGYETLEDLKDIK 277 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440 S + + + + + A +LE ++ +E G E S+ Sbjct: 278 ESHLIELNIENPDDRRRLLSAAENFLE------EEITQEQGNEPEPLSL 320 >gi|329725334|gb|EGG61817.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU144] Length = 392 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 >gi|303232376|ref|ZP_07319068.1| DNA-directed RNA polymerase, beta' subunit [Atopobium vaginae PB189-T1-4] gi|302481460|gb|EFL44528.1| DNA-directed RNA polymerase, beta' subunit [Atopobium vaginae PB189-T1-4] Length = 1484 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGID 421 + V + + G V +L E+ I+G + E++ AR L ++ Sbjct: 1336 DDLGVSQRWTNKFSEVGIETVGDLIGKTEDELLRIDGIGAKAIEELREGLEARNLLYLLE 1395 Query: 422 ITLQKKIRELGVSEELCSIPGI 443 + SE+L + + Sbjct: 1396 PDEDEA-----DSEDLSQLLNM 1412 >gi|296222127|ref|XP_002757050.1| PREDICTED: DNA polymerase beta [Callithrix jacchus] Length = 335 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] Length = 674 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 E A L GF +EE+A + +E + A + E+L + L ++ Sbjct: 512 SEGTATRLCRAGFGSLEEVADAGEERLVEVEDIGPKVAASL----TEHLARLRPELT-RL 566 Query: 429 RELGVSEELCS 439 R+ GVS ++ Sbjct: 567 RQRGVSLDVRD 577 >gi|109086253|ref|XP_001097548.1| PREDICTED: DNA polymerase beta isoform 2 [Macaca mulatta] Length = 335 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|47226550|emb|CAG08566.1| unnamed protein product [Tetraodon nigroviridis] Length = 311 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 E ++G + A +I E+L+ + +KIR S L + GI Sbjct: 57 EEAKKLDGVGAKIAEKI----DEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAAR 112 Query: 450 ALGENGIKTMEDL 462 + G+KT+EDL Sbjct: 113 KFFDEGVKTLEDL 125 >gi|115350977|ref|YP_772816.1| 30S ribosomal protein S1 [Burkholderia ambifaria AMMD] gi|171316178|ref|ZP_02905402.1| ribosomal protein S1 [Burkholderia ambifaria MEX-5] gi|115280965|gb|ABI86482.1| SSU ribosomal protein S1P [Burkholderia ambifaria AMMD] gi|171098687|gb|EDT43482.1| ribosomal protein S1 [Burkholderia ambifaria MEX-5] Length = 576 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ G VI G+ +G +R E R L+ GD+V + + ++ Sbjct: 465 KGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 524 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 525 RKSRG--INLS 533 Score = 37.4 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 157 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 214 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 215 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 268 >gi|329735185|gb|EGG71477.1| putative ribosomal protein S1 [Staphylococcus epidermidis VCU045] Length = 392 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 137 KVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K G+ ++G V++VE V+V + G +G+I + E ++ GD V++Y+ Sbjct: 14 KEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTK 73 Query: 189 VRREQ 193 + ++ Sbjct: 74 IEFDE 78 >gi|307128513|ref|YP_003880543.1| putative 30S ribosomal protein S1 [Candidatus Sulcia muelleri CARI] gi|306482975|gb|ADM89845.1| putative 30S ribosomal protein S1 [Candidatus Sulcia muelleri CARI] Length = 574 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 18/130 (13%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFG---RVAVQSAKQVIIQKVREAERDRQYLEFK 135 ISL R+ + ++ + +D+ ++ AK++I + F Sbjct: 89 ISLNEFREYKKKTKVNDIIEVIVEKIDYKGQCLISYNKAKKIIY-------WESIQKSFI 141 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET----ISRENLRPGDRVKSYIYDVRR 191 +II + R G +IV L + + + + + G ++ + + Sbjct: 142 KNE-KIIFLVIAR-TKGGLIVILFGIECFLPGSQIDIKPVKDFDYFVGKIIEGKVVKINN 199 Query: 192 EQRGPQVLLS 201 + + V++S Sbjct: 200 KTKN--VVVS 207 >gi|315231921|ref|YP_004072357.1| glycogen branching enzyme [Thermococcus barophilus MP] gi|315184949|gb|ADT85134.1| glycogen branching enzyme [Thermococcus barophilus MP] Length = 666 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 9/167 (5%) Query: 327 NV--RLASQLTGW-------TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLV 377 NV RLA+ L + ++ + E E N N + +V E + + Sbjct: 495 NVFHRLANALEEYFKSGEFREVEFLEEIEKKDNPFHPINIEVYVSEEPPSVPEYVEPPEI 554 Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437 + EE V + S A+E R R E + +K ++ + EL Sbjct: 555 PKEKESSEEKTKVANEVVYSYTVIQRAYAMEKIKRKRIPKELPKLKRRKSKKKRNIQSEL 614 Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 I GI SK L + GI+T+ DL ++DL ++ ++KF Sbjct: 615 LKIKGIGSKTLKKLEKAGIRTLNDLKSADLEDLARRTKISVKRLKKF 661 >gi|153207789|ref|ZP_01946389.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177'] gi|165924110|ref|ZP_02219942.1| ribosomal protein S1 [Coxiella burnetii RSA 334] gi|120576341|gb|EAX32965.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177'] gi|165916449|gb|EDR35053.1| ribosomal protein S1 [Coxiella burnetii RSA 334] Length = 551 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 RDP + + MD R V +++ +++ AER + E + G+ I G + Sbjct: 138 RDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEEL--QEGQEIKGVI 195 Query: 147 KRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ + + L GD V + R+++ Sbjct: 196 KNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKK 249 >gi|62289016|ref|YP_220809.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941] gi|82698954|ref|YP_413528.1| 30S ribosomal protein S1 [Brucella melitensis biovar Abortus 2308] gi|189023292|ref|YP_001934060.1| 30S ribosomal protein S1 [Brucella abortus S19] gi|254696460|ref|ZP_05158288.1| 30S ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59] gi|254731372|ref|ZP_05189950.1| 30S ribosomal protein S1 [Brucella abortus bv. 4 str. 292] gi|260546309|ref|ZP_05822049.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260759107|ref|ZP_05871455.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292] gi|260760832|ref|ZP_05873175.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59] gi|62195148|gb|AAX73448.1| RpsA, ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941] gi|82615055|emb|CAJ09981.1| Ribosomal protein S1:RNA binding S1 [Brucella melitensis biovar Abortus 2308] gi|189018864|gb|ACD71586.1| Ribosomal protein S1 [Brucella abortus S19] gi|260096416|gb|EEW80292.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260669425|gb|EEX56365.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292] gi|260671264|gb|EEX58085.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59] Length = 566 Score = 38.1 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] Length = 708 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 32/139 (23%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V + IA LL A + +E L ++A I+G + A + + + ++ Sbjct: 550 VGKTIAELLAAA-YPSIEALMEASEEDLAVIDGVGPKIA---RSAYLFLRTPDNAAVIER 605 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 +R GV+ LA + D + G G Sbjct: 606 LRSHGVA---------------------------LADEAADAGEQLPQTLAGLTFVLTGS 638 Query: 488 LSSLGTPKDQVESMIIHAR 506 L G +D+ + ++ AR Sbjct: 639 LVESGMTRDEAGA-VLKAR 656 >gi|150399289|ref|YP_001323056.1| DNA repair and recombination protein RadA [Methanococcus vannielii SB] gi|150011992|gb|ABR54444.1| DNA repair and recombination protein RadA [Methanococcus vannielii SB] Length = 322 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTAEKLIEAGYLDFMKIATSTIGELTDIEGISE 46 >gi|50556100|ref|XP_505458.1| YALI0F15477p [Yarrowia lipolytica] gi|49651328|emb|CAG78267.1| YALI0F15477p [Yarrowia lipolytica] Length = 329 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 350 NRQKDFNERTQFFMQAI---NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 ++ ++ + + + + L G VE +A + +I+G E A Sbjct: 1 MADEEIERAGAIPIERLAVNGITQTDINRLGEFGLYTVESVAYTPKKHLLTIKGISEAKA 60 Query: 407 VEIQGRARE 415 ++ A + Sbjct: 61 DKLLSEASK 69 >gi|46117014|ref|XP_384525.1| hypothetical protein FG04349.1 [Gibberella zeae PH-1] Length = 564 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED----- 347 P L E ++++VP + L IGR G+ +R + +G I+I+ E + Sbjct: 284 PNKGGATALREGEDHMQIMVPDRTVGLIIGRGGETIRDLQERSGCHINIVGESKSVNGLR 343 Query: 348 --SINRQKDFNERTQFF-MQAINVD 369 ++ ++ R + F M+ ++ D Sbjct: 344 PVNLIGTREAAARAKDFIMEIVDSD 368 >gi|332522644|ref|ZP_08398896.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus str. Jelinkova 176] gi|332313908|gb|EGJ26893.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus str. Jelinkova 176] Length = 742 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 36/185 (19%) Query: 29 SVMADSIQKAARSLYGTMSDIRVEINP------------ETGDISLFRLLEVVEEVENYT 76 ++ +++ +A ++ + + I I +T I + ++ V+ + Sbjct: 531 QILEEALAQAKKARFEILDVIEATIATPRLELAPTAPKIDTIKIDVDKIKVVIGKGGETI 590 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +I + D I + D + A+ K++I VREA Sbjct: 591 DKIIAETGVKID----IDDEGMVQIFSSD--QAAINRTKEIIAGLVREA----------- 633 Query: 137 KVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDET------ISRENLRPGDRVKSYIYDV 189 KVGE+ V R+E V+L +D ++ E + L G+ V + V Sbjct: 634 KVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVSDVLEIGEEVDVKVIKV 693 Query: 190 RREQR 194 + R Sbjct: 694 DEKGR 698 >gi|301765968|ref|XP_002918406.1| PREDICTED: DNA polymerase beta-like [Ailuropoda melanoleuca] Length = 335 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|301629530|ref|XP_002943891.1| PREDICTED: 30S ribosomal protein S1-like [Xenopus (Silurana) tropicalis] Length = 390 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G+ +SG VK V+ +DLG + G +R E R L+ GD V + + +V Sbjct: 278 KGQTVSGKVKSVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVD 337 Query: 191 REQRGPQV 198 R+ R Q+ Sbjct: 338 RKTRNIQL 345 >gi|325520510|gb|EGC99606.1| 30S ribosomal protein S1 [Burkholderia sp. TJI49] Length = 570 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ G VI G+ +G +R E R L+ GD+V + + ++ Sbjct: 459 KGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 518 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 519 RKSRG--INLS 527 Score = 37.4 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 151 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 208 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 209 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 262 >gi|294102013|ref|YP_003553871.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM 12261] gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM 12261] Length = 503 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 11/98 (11%) Query: 128 DRQYLEFKDKV---GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR------ENLR 177 + ++ + G++++GT+ +VD+G +G + R E + E Sbjct: 21 ESMLEKYAGEEIHKGKVVTGTIVGANEDGWLVDVGYKCEGFLPRREWTHKILVEEEEEPS 80 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHME 215 D ++ + ++R + Q+L+SR +F + +E Sbjct: 81 INDEIQVQVINIRHGE-DAQLLVSRWRCEFDRRWAELE 117 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 8/131 (6%) Query: 82 KVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI 141 + R +P +G V L D + + ++++++++ E +R++ Y G+I Sbjct: 156 EEGRGVNPGKFVGEVFDVKLLEKDRRKRRLVLSRRMLVEEAVEEQRNKFYTTVS--EGDI 213 Query: 142 ISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRG 195 + G V + ++LG DG++ E +E ++ G+ VK + + +E Sbjct: 214 LEGRVSSITSFGAFINLGPIDGLVHISELSWKRNVKPKEVVKKGETVKVKVIGIEQENNR 273 Query: 196 PQVLLSRTHPQ 206 + + +T P Sbjct: 274 VSLSIKQTQPD 284 >gi|225389317|ref|ZP_03759041.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme DSM 15981] gi|225044618|gb|EEG54864.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme DSM 15981] Length = 660 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 30/159 (18%) Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ-------- 120 V +V + + ++ AR P+ + D + A Q + +I + Sbjct: 405 VTQVLDGGLSVEVEGARVFIPASLVSDSYE-----KDLSKYAGQDIEFIITEFNPKRRRI 459 Query: 121 -----KVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 + A++ + E ++ G++ G VK V +DLG +DG++ E Sbjct: 460 IGDRKALLVAQKAKMKEELFSRIQPGDVTDGVVKNVTDFGAFIDLGGADGLLHISEMSWG 519 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 ++ + G++V+ I D++ G ++ LS P+ Sbjct: 520 RVENPKKVFKTGEQVRVLIKDIQ----GEKIALSLKFPE 554 >gi|163788766|ref|ZP_02183211.1| putative 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] gi|159876003|gb|EDP70062.1| putative 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] Length = 613 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Query: 116 QVIIQKVREAERDRQYLEFKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISR 173 QV +K+ E E F D E++ G V + + I+D+ S+GVI +E Sbjct: 51 QVADKKLEEFE-KLVSENFVDTLDDEVVEGEVIHITDRDAIIDINAKSEGVISLNEFRYN 109 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLS 201 +L+ GD+V+ I DVR + G Q++LS Sbjct: 110 PDLKVGDKVEVLI-DVREDATG-QLVLS 135 Score = 37.0 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D ++ +F + V K +I + E +++ Sbjct: 178 EAFLPGSQIDVKPIRDYDQYVNKTMEFKVVKINHEFKNIVVSH-KALIEADIEEQKKEII 236 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ G VK + V +DLG DG++ + E + ++ Sbjct: 237 -GQLE--KGQVLEGIVKNITSYGVFIDLGGVDGLVHITDLSWSRINHPNEIVELDQKLNV 293 Query: 185 YIYDVRREQRGPQV 198 I D + Q+ Sbjct: 294 VILDFDENKSRIQL 307 >gi|23500942|ref|NP_697069.1| 30S ribosomal protein S1 [Brucella suis 1330] gi|148560426|ref|YP_001258073.1| 30S ribosomal protein S1 [Brucella ovis ATCC 25840] gi|161511120|ref|NP_540832.2| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|161618017|ref|YP_001591904.1| 30S ribosomal protein S1 [Brucella canis ATCC 23365] gi|163842303|ref|YP_001626707.1| 30S ribosomal protein S1 [Brucella suis ATCC 23445] gi|225851571|ref|YP_002731804.1| 30S ribosomal protein S1 [Brucella melitensis ATCC 23457] gi|254690342|ref|ZP_05153596.1| 30S ribosomal protein S1 [Brucella abortus bv. 6 str. 870] gi|254694831|ref|ZP_05156659.1| 30S ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya] gi|254700843|ref|ZP_05162671.1| 30S ribosomal protein S1 [Brucella suis bv. 5 str. 513] gi|254705209|ref|ZP_05167037.1| 30S ribosomal protein S1 [Brucella suis bv. 3 str. 686] gi|254707271|ref|ZP_05169099.1| 30S ribosomal protein S1 [Brucella pinnipedialis M163/99/10] gi|254709187|ref|ZP_05170998.1| 30S ribosomal protein S1 [Brucella pinnipedialis B2/94] gi|254718248|ref|ZP_05180059.1| 30S ribosomal protein S1 [Brucella sp. 83/13] gi|256030711|ref|ZP_05444325.1| 30S ribosomal protein S1 [Brucella pinnipedialis M292/94/1] gi|256060170|ref|ZP_05450352.1| 30S ribosomal protein S1 [Brucella neotomae 5K33] gi|256112535|ref|ZP_05453456.1| 30S ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether] gi|256158714|ref|ZP_05456593.1| 30S ribosomal protein S1 [Brucella ceti M490/95/1] gi|256254116|ref|ZP_05459652.1| 30S ribosomal protein S1 [Brucella ceti B1/94] gi|256258596|ref|ZP_05464132.1| 30S ribosomal protein S1 [Brucella abortus bv. 9 str. C68] gi|256264918|ref|ZP_05467450.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|256368492|ref|YP_003105998.1| 30S ribosomal protein S1 [Brucella microti CCM 4915] gi|260169614|ref|ZP_05756425.1| 30S ribosomal protein S1 [Brucella sp. F5/99] gi|260563108|ref|ZP_05833594.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260567325|ref|ZP_05837795.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260755883|ref|ZP_05868231.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870] gi|260884907|ref|ZP_05896521.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68] gi|261215158|ref|ZP_05929439.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya] gi|261221257|ref|ZP_05935538.1| ribosomal protein S1 [Brucella ceti B1/94] gi|261314754|ref|ZP_05953951.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10] gi|261316687|ref|ZP_05955884.1| ribosomal protein S1 [Brucella pinnipedialis B2/94] gi|261324148|ref|ZP_05963345.1| ribosomal protein S1 [Brucella neotomae 5K33] gi|261751352|ref|ZP_05995061.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513] gi|261755917|ref|ZP_05999626.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686] gi|261759142|ref|ZP_06002851.1| ribosomal protein S1 [Brucella sp. F5/99] gi|265983208|ref|ZP_06095943.1| ribosomal protein S1 [Brucella sp. 83/13] gi|265987757|ref|ZP_06100314.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1] gi|265993974|ref|ZP_06106531.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether] gi|265997218|ref|ZP_06109775.1| ribosomal protein S1 [Brucella ceti M490/95/1] gi|297247435|ref|ZP_06931153.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196] gi|306839990|ref|ZP_07472784.1| ribosomal protein S1 [Brucella sp. NF 2653] gi|306842680|ref|ZP_07475323.1| ribosomal protein S1 [Brucella sp. BO2] gi|306843627|ref|ZP_07476228.1| ribosomal protein S1 [Brucella sp. BO1] gi|23346797|gb|AAN28984.1| ribosomal protein S1 [Brucella suis 1330] gi|148371683|gb|ABQ61662.1| ribosomal protein S1 [Brucella ovis ATCC 25840] gi|161334828|gb|ABX61133.1| ribosomal protein S1 [Brucella canis ATCC 23365] gi|163673026|gb|ABY37137.1| ribosomal protein S1 [Brucella suis ATCC 23445] gi|225639936|gb|ACN99849.1| ribosomal protein S1 [Brucella melitensis ATCC 23457] gi|255998650|gb|ACU47049.1| 30S ribosomal protein S1 [Brucella microti CCM 4915] gi|260153124|gb|EEW88216.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260156843|gb|EEW91923.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260675991|gb|EEX62812.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870] gi|260874435|gb|EEX81504.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68] gi|260916765|gb|EEX83626.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya] gi|260919841|gb|EEX86494.1| ribosomal protein S1 [Brucella ceti B1/94] gi|261295910|gb|EEX99406.1| ribosomal protein S1 [Brucella pinnipedialis B2/94] gi|261300128|gb|EEY03625.1| ribosomal protein S1 [Brucella neotomae 5K33] gi|261303780|gb|EEY07277.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10] gi|261739126|gb|EEY27122.1| ribosomal protein S1 [Brucella sp. F5/99] gi|261741105|gb|EEY29031.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513] gi|261745670|gb|EEY33596.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686] gi|262551686|gb|EEZ07676.1| ribosomal protein S1 [Brucella ceti M490/95/1] gi|262764955|gb|EEZ10876.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether] gi|263095403|gb|EEZ19004.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|264659954|gb|EEZ30215.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1] gi|264661800|gb|EEZ32061.1| ribosomal protein S1 [Brucella sp. 83/13] gi|297174604|gb|EFH33951.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196] gi|306276318|gb|EFM58018.1| ribosomal protein S1 [Brucella sp. BO1] gi|306287126|gb|EFM58628.1| ribosomal protein S1 [Brucella sp. BO2] gi|306404954|gb|EFM61239.1| ribosomal protein S1 [Brucella sp. NF 2653] gi|326408040|gb|ADZ65105.1| 30S ribosomal protein S1 [Brucella melitensis M28] gi|326537757|gb|ADZ85972.1| ribosomal protein S1 [Brucella melitensis M5-90] Length = 566 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA------ARS---------LYGTMSDIR-VEINPETGDISLFRLLEV 68 +V + + +++ +A AR + + V N G ++ V Sbjct: 75 EVYVERIENALGEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAV 134 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P + + + MD R + +++ ++++ R +R Sbjct: 135 A---FLPRSQVDIRPIRDVTPLMHVPQP--FEILKMDKRRGNIVVSRRTVLEESRAEQRS 189 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G+++ G VK + VDLG DG++ + E L G V Sbjct: 190 EIVQNLE--EGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTV 247 Query: 183 KSYIYDVRREQ 193 K I + +E Sbjct: 248 KVQIIRINQET 258 >gi|20067683|emb|CAD29083.1| chimeric DNA-directed DNA polymerase bf4-8 [synthetic construct] gi|20067685|emb|CAD29084.1| chimeric DNA-directed DNA polymerase bf4-10 [synthetic construct] Length = 322 Score = 38.1 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|291059681|gb|ADD72416.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Chicago] Length = 829 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%) Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENL----RPGDRVKSYIYDVRREQ 193 G + GTV +V G V VD+ G S+G + E + GD V+ Y+ V Sbjct: 288 GSVRMGTVVQVNAGTVFVDIGGKSEG------RVPVEEFEAPPKAGDGVRVYVERV--TP 339 Query: 194 RGPQVLLSRTHPQ 206 GP LS+T Sbjct: 340 YGP--ELSKTKAD 350 >gi|291288842|ref|YP_003505658.1| hydroxymethylbutenyl pyrophosphate reductase [Denitrovibrio acetiphilus DSM 12809] gi|290886002|gb|ADD69702.1| hydroxymethylbutenyl pyrophosphate reductase [Denitrovibrio acetiphilus DSM 12809] Length = 843 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS-RE-NLRPGDRVKSYIYDVRREQR 194 I+ GTV ++ +V+V++G ++GV+ E + E ++ GD V + Sbjct: 308 KNSIVQGTVAQINENDVLVNIGFKTEGVVPSAEFMKDGEITIKVGDEVDVLFLGIA--GG 365 Query: 195 GPQVLLSRTHPQ------FMVKLFHMEVP-EIY 220 G V LSR + + K E P EI Sbjct: 366 GGYVKLSRKAIEKEADWIEVEKALEEETPVEIK 398 >gi|254586193|ref|XP_002498664.1| ZYRO0G15730p [Zygosaccharomyces rouxii] gi|238941558|emb|CAR29731.1| ZYRO0G15730p [Zygosaccharomyces rouxii] Length = 1717 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 15/107 (14%) Query: 117 VIIQKVREAERD---RQYLEFKD-KVGEIISGTVKRVEYGNVIVDLGNS---DGVIRRDE 169 I+ +RE+E + + + D KVG+I +G VK V V V L ++ G+ R E Sbjct: 1234 RILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFGVFVKLDDTVNLTGLAHRTE 1293 Query: 170 ------TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 GDRVK+YI V E+R ++ LS +F + Sbjct: 1294 IADEAPQDLNSLFGVGDRVKAYITKVNAEKR--KISLSLKASRFSKE 1338 >gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] Length = 896 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQG---RARE 415 L+A F +E + + E+++I+G E A + ARE Sbjct: 746 LIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVVNWFAAARE 788 >gi|268324987|emb|CBH38575.1| putative ski2-type helicase [uncultured archaeon] Length = 672 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 V IIA L + GF + EE+A + + + G + A +I+ A Sbjct: 621 GVGRIIARRLYSAGFRNEEEVANADLERLGGVHGVGAKRAAKIKEEA 667 >gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171] Length = 900 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQG---RARE 415 L+A F +E + + E+++I+G E A + ARE Sbjct: 750 LIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVVNWFAAARE 792 >gi|157412745|ref|YP_001483611.1| hypothetical protein P9215_04091 [Prochlorococcus marinus str. MIT 9215] gi|157387320|gb|ABV50025.1| Hypothetical protein P9215_04091 [Prochlorococcus marinus str. MIT 9215] Length = 236 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 6/81 (7%) Query: 337 WTIDIITEEEDSINRQKDFNER------TQFFMQAINVDEIIAHLLVAEGFADVEELACV 390 + + +E I ++ +R + V++ A +L G+ E++ Sbjct: 156 YELSTKSEAYKDIYKKLVLEKRFPDSFFRNILCELNGVNKNTASILWESGYLTKEQVLNA 215 Query: 391 KISEIASIEGFDEETAVEIQG 411 SE+ I+G + ++I+ Sbjct: 216 PYSELIEIKGLGKSLILKIKN 236 >gi|149278739|ref|ZP_01884874.1| 30S ribosomal protein S1 [Pedobacter sp. BAL39] gi|149230358|gb|EDM35742.1| 30S ribosomal protein S1 [Pedobacter sp. BAL39] Length = 644 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 GEIISG V + +V++++G SDG++ E +L+ GD V ++ Sbjct: 87 QGEIISGIVVSINNKDVVLNVGFKSDGLVSTSEFRDTPDLKIGDTVDVFVEAPEDANG-- 144 Query: 197 QVLLSR 202 Q++LSR Sbjct: 145 QLILSR 150 Score = 37.4 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E QI +K RD D + +G + + ++ V + +++I+ E+++ Sbjct: 192 EAFLPGSQIDIKPIRDYD--VYVGKTMEFKVVKINHEFKNVVVSHKILIEDDLESQKVEI 249 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKS 184 + + G+++ GTVK + V +DLG DG++ + +E L +++ Sbjct: 250 VSKLE--KGQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWGRIEHPKEVLSLDEKINV 307 Query: 185 YIYDVRREQR 194 + D E++ Sbjct: 308 VVLDFDDEKK 317 >gi|85708921|ref|ZP_01039987.1| 30S ribosomal protein S1 [Erythrobacter sp. NAP1] gi|85690455|gb|EAQ30458.1| 30S ribosomal protein S1 [Erythrobacter sp. NAP1] Length = 569 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD P +++ + MD R + +++ ++++ R +R + Sbjct: 141 PGSQVDIRPVRDVTPLMEVPQP--FQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKL 198 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G++I G VK + VDLG DG++ + E + GD V I Sbjct: 199 A--EGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVTVQIVR 256 Query: 189 VRREQ 193 + E Sbjct: 257 INAET 261 >gi|254525398|ref|ZP_05137450.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9202] gi|221536822|gb|EEE39275.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9202] Length = 236 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 6/81 (7%) Query: 337 WTIDIITEEEDSINRQKDFNER------TQFFMQAINVDEIIAHLLVAEGFADVEELACV 390 + + +E I ++ +R + V++ A +L G+ E++ Sbjct: 156 YELGTKSEAYKDIYKKLVLEKRFPDSFFRNILCELNGVNKNTASILWESGYLTKEQVLNA 215 Query: 391 KISEIASIEGFDEETAVEIQG 411 SE+ I+G + ++I+ Sbjct: 216 PYSELIEIKGLGKSLILKIKN 236 >gi|114619952|ref|XP_001143667.1| PREDICTED: polymerase (DNA directed), beta isoform 1 [Pan troglodytes] Length = 306 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|83859038|ref|ZP_00952559.1| Glycosyl hydrolase, BNR repeat [Oceanicaulis alexandrii HTCC2633] gi|83852485|gb|EAP90338.1| Glycosyl hydrolase, BNR repeat [Oceanicaulis alexandrii HTCC2633] Length = 1403 Score = 38.1 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 44/215 (20%) Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 GW + E S D + I +D LV F +V + A V+++ Sbjct: 1002 GWRV-----ESISCAGDLDGGSQVDLATGTIQIDLDPEENLVCT-FENVRDEAAVQLATQ 1055 Query: 396 ASIEGFDEETAVEIQGRAREYLEGI-----------DITLQKKIRELGVSEELC------ 438 +I F A + A + + + + + ++ L Sbjct: 1056 RAIRNFMLRRADRLIDAAPDLSTRLSARESMGAGQYAANVDQGRYTMSLTASLAGARNQA 1115 Query: 439 -----SIPGIDSKIKVALGENGIKTMEDLAGCSVD---DLLGWSENKGGNIEKFDGFLSS 490 PG+ S + +D+ V +L G S+N+ G + D ++ Sbjct: 1116 KARHSDAPGMPSSM-----------RDDVGRLDVWLSAELSGVSDNRAGERAESDFGVAQ 1164 Query: 491 LGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 LG +++++ A +M W+++ A E ++A Sbjct: 1165 LGLDWAVSDALLVGAMVQMDWMDET--AQEVFEEA 1197 >gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000] gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000] Length = 556 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 10/119 (8%) Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD--KVGEIIS 143 D I + R + V + ++E +++ E+ K G+I+ Sbjct: 140 DISRGIKEADYIGKEFQFKIIDRKGNKDIV-VSRRVLQEETQNKVIEEYLSNLKEGDIVE 198 Query: 144 GTVKRVEYGNVIVDL-GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRG 195 G VK +E + L DG + + + G+ K + V +E+R Sbjct: 199 GKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKEKRK 257 >gi|296815918|ref|XP_002848296.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480] gi|238841321|gb|EEQ30983.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480] Length = 350 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 342 ITEEEDSINRQKDFNERT-----QFFMQAINVDEIIA---HLLVAEGFADVEELACVKIS 393 +T EE S ++ N V + A L+ GF VE +A Sbjct: 1 MTAEEASQAELEEENGLPGPGAPTPLSALEGVGGLTARDIKLITDGGFHTVEAVAYTPKR 60 Query: 394 EIASIEGFDEETAVEIQGRA 413 + I+G E+ A +I A Sbjct: 61 VLEQIKGISEQKATKILTEA 80 >gi|254475708|ref|ZP_05089094.1| hypothetical protein RR11_1546 [Ruegeria sp. R11] gi|214029951|gb|EEB70786.1| hypothetical protein RR11_1546 [Ruegeria sp. R11] Length = 194 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 V +A +L A G VE +A K + I A ++ AR+ Sbjct: 9 GVGPSLAEVLQANGLPSVEAVAAAKPDTLMQIPRIGRLRATKLIAEARKV 58 >gi|220908724|ref|YP_002484035.1| hypothetical protein Cyan7425_3349 [Cyanothece sp. PCC 7425] gi|219865335|gb|ACL45674.1| conserved hypothetical protein [Cyanothece sp. PCC 7425] Length = 512 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 +L VE LA + ++ ++ GF + A ++ +AR L I Sbjct: 235 VLQQHRLTTVEALASIAPQQLEALPGFGRDVAEKLVRQARSTLHNHAI 282 >gi|167586532|ref|ZP_02378920.1| 30S ribosomal protein S1 [Burkholderia ubonensis Bu] Length = 570 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ G VI G+ +G +R E R L+ GD+V + + ++ Sbjct: 459 KGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 518 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 519 RKSRG--INLS 527 Score = 37.4 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 151 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 208 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 209 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 262 >gi|74316974|ref|YP_314714.1| 30S ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259] gi|74056469|gb|AAZ96909.1| ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259] Length = 573 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 96 VVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI 155 + + +D R V +++ ++++ A+R+ K G I+ G VK + Sbjct: 162 EMEFKVIKLDRKRNNVVVSRRAVLEETMGADREALMESLK--EGSIVKGVVKNITDYGAF 219 Query: 156 VDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 VDLG DG++ + E + G +++ I E+ Sbjct: 220 VDLGGIDGLLHITDMAWRRVKHPTEVVHVGQELEAKILRYDTEKN 264 >gi|86138472|ref|ZP_01057046.1| hypothetical protein MED193_05191 [Roseobacter sp. MED193] gi|85824997|gb|EAQ45198.1| hypothetical protein MED193_05191 [Roseobacter sp. MED193] Length = 240 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 V +A L G VE +A + ++ +I G A+ ++ A Sbjct: 9 GVGPALAKTLKDHGLLTVEAVAAAPLEDLKAIPGIGAARAMRLKQAA 55 >gi|289192763|ref|YP_003458704.1| DNA repair and recombination protein RadA [Methanocaldococcus sp. FS406-22] gi|288939213|gb|ADC69968.1| DNA repair and recombination protein RadA [Methanocaldococcus sp. FS406-22] Length = 324 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 16/48 (33%) Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 Q V A L G+ D ++A I E+ I+G Sbjct: 1 MVIIMDDLTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGIS 48 >gi|218884526|ref|YP_002428908.1| DNA repair and recombination protein RadA [Desulfurococcus kamchatkensis 1221n] gi|254764424|sp|B8D610|RADA_DESK1 RecName: Full=DNA repair and recombination protein radA gi|218766142|gb|ACL11541.1| DNA repair and recombination protein radA [Desulfurococcus kamchatkensis 1221n] Length = 328 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++EE+++I + + V IA L A G+ + + E+A G Sbjct: 1 MSEEKETIKERSSGFISVR---DIPGVGSSIADKLEAAGYLSAWSIVVARAEELAERTGL 57 Query: 402 DEETAVEIQGRAREYL 417 T +I AR+ L Sbjct: 58 PVLTVQKIIENARKML 73 >gi|160945617|ref|ZP_02092843.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii M21/2] gi|158443348|gb|EDP20353.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii M21/2] Length = 636 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 VG+ +G VK + VD+G DG+ E E + GD ++ Y+ D+ Sbjct: 473 VGKTYTGVVKSLTSYGAFVDIGGVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDIDT 532 Query: 192 EQ 193 E Sbjct: 533 EN 534 >gi|13878702|sp|Q9Y8J4|RADA_DESAM RecName: Full=DNA repair and recombination protein radA gi|4929344|gb|AAD33955.1|AF145465_1 recombination/repair protein RadA [Desulfurococcus amylolyticus] Length = 328 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++EE+++I + + V IA L A G+ + + E+A G Sbjct: 1 MSEEKETIKERSSGFISVR---DIPGVGSSIADKLEAAGYLSAWSIVVARAEELAERTGL 57 Query: 402 DEETAVEIQGRAREYL 417 T +I AR+ L Sbjct: 58 PVLTVQKIIENARKML 73 >gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 638 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVE-NYTCQ 78 + R+++ + + R M+ + I+ ++S + V ++ + Sbjct: 457 GLTREIIEEALEQA-----RRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKPDKIRD 511 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + + +I L G + + + Q +I + RE + +V Sbjct: 512 VIGPGGKKIN---EIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITRE---AEV 565 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRR 191 G+ TVKR+E V L + IS+ + L+ GD ++ I ++ + Sbjct: 566 GQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITEIDK 625 Query: 192 EQR 194 + R Sbjct: 626 QGR 628 >gi|322417835|ref|YP_004197058.1| PHP domain-containing protein [Geobacter sp. M18] gi|320124222|gb|ADW11782.1| PHP domain protein [Geobacter sp. M18] Length = 576 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 8/104 (7%) Query: 385 EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIPG 442 +LA + E+ I G + A R EYL+ + +++++ + L S+P Sbjct: 42 RDLAQMSHKELLEIPGVGADLA----ARIEEYLQTGTMAYYEQLKQEVPAGVFALLSVPD 97 Query: 443 IDSKIKVALGEN-GIKTMEDLAGCSVD-DLLGWSENKGGNIEKF 484 + K A+ E + ++E+L +++ L+G K E Sbjct: 98 LGPKTAKAIYEALQVTSLEELEKAALEHRLIGIKGIKEKTEENI 141 >gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814] gi|149752742|gb|EDM62673.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814] Length = 269 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 14/120 (11%) Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 + + + + + V SA++++ +K R+ + KVG I++GTV+ Sbjct: 119 ETYLLKDIEVKVIDVDEANNRLVLSAREILQEKARKEREAKIA---AVKVGSIVTGTVES 175 Query: 149 VEYGNVIVDLGNSDGVIRRDETI-------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 ++ VDLG+ + I + L GD V I ++ ++ LS Sbjct: 176 LQNYGAFVDLGDGLSGLVHISQISLKRIKSPADVLNVGDEVTVKIIGIKDG----KISLS 231 >gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB] gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB] Length = 584 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS--EELCSIPGIDSKI 447 + ++ ++ G E A ++ R + + +R+ L IPGI K Sbjct: 53 AEGEDLKALPGIGEAIASKMAELVR----TGHLVAWETLRDSLPEGLSTLLEIPGIGPKT 108 Query: 448 KVALG-ENGIKTMEDLAGCSVDD 469 L E GI ++++L ++ + Sbjct: 109 AYRLATELGISSVDEL-EQAILE 130 >gi|20067679|emb|CAD29081.1| chimeric DNA-directed DNA polymerase bf4-4 [synthetic construct] Length = 324 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|20067689|emb|CAD29086.1| chimeric DNA-directed DNA polymerase bf4-12 [synthetic construct] Length = 318 Score = 38.1 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] Length = 675 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 363 MQAINVDEIIAHLLVAEGF-ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M + + L A+GF ++L + +++ ++GF E+ + E ++ Sbjct: 453 MNIMGLGPKQIQQLYAKGFIHHFDDLYKLTADQLSQLDGFKEKRVNNLL----EAIDRSR 508 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 +++ I G+ +K+ L E +M+ L SV++ Sbjct: 509 QNSLERLVNG------LGIQGVGTKMARTLAEA-FGSMDRLMEASVEEF 550 >gi|73979125|ref|XP_532790.2| PREDICTED: similar to polymerase (DNA directed), beta isoform 1 [Canis familiaris] Length = 335 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|71894584|ref|YP_278692.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma synoviae 53] gi|123747931|sp|Q4A5J0|RPOA_MYCS5 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha gi|71851372|gb|AAZ43981.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma synoviae 53] Length = 333 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 15/100 (15%) Query: 328 VRLASQ-----------LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 ++LA + LT D I + E +++ + + +N+ + L Sbjct: 233 IKLACKILVAHFQTIGDLTDLDSDEIFQSEKQSLEKEEDDMEIRL----LNLSMRSQNAL 288 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 G + ELA I ++ I+ E++ EI + EY Sbjct: 289 AKSGIKTLNELASYPIEKLKEIKNLGEKSREEIIRKLNEY 328 >gi|302336390|ref|YP_003801597.1| DNA-directed RNA polymerase subunit beta' [Olsenella uli DSM 7084] gi|301320230|gb|ADK68717.1| DNA-directed RNA polymerase subunit beta' [Olsenella uli DSM 7084] Length = 1476 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 20/144 (13%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGID 421 + V + + G V +L ++ I+G + E++ AR L ++ Sbjct: 1335 DDLGVSQRWTNKFSEVGIETVGDLIGKTEDDLLRIDGIGAKAIEELRDGLEARNLLYILE 1394 Query: 422 ITLQKKIRELGVSEELCSIPGI------DSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + SE+L + + DS I + +D +L+G S Sbjct: 1395 PDDDEA-----DSEDLSQLLNMVFSPDADSDIMLGTAAPAKHNFDD-------ELIGGSS 1442 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVE 499 G+ + L SL QVE Sbjct: 1443 EGDGDSSVINEDLGSLHDLLSQVE 1466 >gi|330815897|ref|YP_004359602.1| 30S ribosomal protein S1 [Burkholderia gladioli BSR3] gi|327368290|gb|AEA59646.1| 30S ribosomal protein S1 [Burkholderia gladioli BSR3] Length = 576 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 465 KGSIVDGVVKTVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 524 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 525 RKSRG--INLS 533 Score = 37.4 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 157 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 214 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 215 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 268 >gi|257387054|ref|YP_003176827.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Halomicrobium mukohataei DSM 12286] gi|257169361|gb|ACV47120.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Halomicrobium mukohataei DSM 12286] Length = 464 Score = 38.1 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 DE ++++ A + E D + + ++ S+ GI L E GI+T++D Sbjct: 380 DEAVPIDVESPADDAAESDD--GEAAHESAADAPDVASVDGIGPTYADRLREAGIETVDD 437 Query: 462 LAGCSVDDLLGWSENKGGNIEKF 484 LAG +L +E + + Sbjct: 438 LAGHDAAELAEIAETTESRVRDW 460 >gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF] gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF] Length = 663 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 363 MQAINVDEIIAHLLVAEG-FADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 M + E + L + G DV ++ + +E++++EGF +++A + E Sbjct: 444 MDIEGLGEKVVEKLYSHGLIKDVADIYYLAKNELSNLEGFGDKSAENLLQAIEE 497 >gi|149072030|ref|YP_001293601.1| RNA polymerase alpha subunit [Rhodomonas salina] gi|172048721|sp|A6MW22|RPOA_RHDSA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha gi|134302981|gb|ABO70785.1| RNA polymerase alpha subunit [Rhodomonas salina] Length = 314 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 I+ ++EED++ + ++ Q ++ + + + L V +L ++ Sbjct: 225 EINFKSDEEDTV---AEDSKINQILIEELQLSVRAYNCLKRAQIHSVADLLDYSQEDLIE 281 Query: 398 IEGFDEETAVEIQGRAREYL 417 I+ F +++A E+ ++ L Sbjct: 282 IKNFGQKSAEEVIDALQKRL 301 >gi|57641267|ref|YP_183745.1| RNA helicase Ski2-like protein [Thermococcus kodakarensis KOD1] gi|68052052|sp|Q5JGV6|HELS_PYRKO RecName: Full=Putative ski2-type helicase; Contains: RecName: Full=Endonuclease PI-PkoHel; AltName: Full=Pko Hel intein gi|57159591|dbj|BAD85521.1| RNA helicase Ski2 homolog [Thermococcus kodakarensis KOD1] Length = 1125 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ N+ A L GF VE++ K ++ +EG + I Sbjct: 1050 LVKLPNIGRRRARALYNAGFRSVEDILRAKPKDLLQVEGIGLKIIEGI 1097 >gi|332828388|gb|EGK01097.1| hypothetical protein HMPREF9455_02619 [Dysgonomonas gadei ATCC BAA-286] Length = 601 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Query: 131 YLEFKDKVG--EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIY 187 Y + +KV E++ G V + V+V++G SDGV+ +E +L+ GD V+ YI Sbjct: 37 YDQSLNKVNDKEVVMGKVTAMNKREVVVNIGYKSDGVVSMNEFRYNPDLKIGDEVEVYIE 96 Query: 188 DVRREQRGPQVLLS 201 + +++G Q++LS Sbjct: 97 S-QEDKKG-QLILS 108 >gi|328462395|gb|EGF34445.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus MTCC 5462] Length = 121 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRRE 192 G+++ G V R+ VDLG DG++ E + L+ G +K + +V + Sbjct: 30 GDVVEGKVARLTNFGAFVDLGGVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPD 89 Query: 193 QRGPQVLLS 201 + ++ LS Sbjct: 90 RN--RISLS 96 >gi|251795508|ref|YP_003010239.1| hypothetical protein Pjdr2_1478 [Paenibacillus sp. JDR-2] gi|247543134|gb|ACT00153.1| hypothetical protein Pjdr2_1478 [Paenibacillus sp. JDR-2] Length = 736 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 19/167 (11%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIA----HLLVAEGFAD------VEELACVKISEI- 395 +S + + N+ Q F Q ++E + L + + VE+ + ++ + Sbjct: 449 ESRSELNELNDSKQKFSQ---IEEDLIYDCVQRLEDATYRERHAKEAVEKELHIHLNGLF 505 Query: 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENG 455 D E E+ G+ + L+++I + +S+E IP ID ++K L NG Sbjct: 506 GERRNIDHEEKTELSGKLASF---QKTWLEEQIIKHKISQE--KIPEIDDEMKRLLRTNG 560 Query: 456 IKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMI 502 I+T D +++ G + + +G +G + Q ++++ Sbjct: 561 IRTPADFMDITINQSYGRKQIDRAYLILKNGGSVHVGMSRSQAKALV 607 >gi|114799965|ref|YP_759538.1| hypothetical protein HNE_0811 [Hyphomonas neptunium ATCC 15444] gi|114740139|gb|ABI78264.1| hypothetical protein HNE_0811 [Hyphomonas neptunium ATCC 15444] Length = 652 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 22/128 (17%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A ++ A L G V +L E A + G T + +E + Sbjct: 524 VDAPSIGPKTAAHLARAGIETVGDLIICDPDETAELLGVRHITV--------DAVETWQM 575 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCS---VDDL-LGWSENKG 478 + + +PG+ L GI + EDLA S V +L + + + Sbjct: 576 Q----------ATLMIEVPGLRVHDAQLLVGAGISSREDLASASAATVFELAMEFLQTSA 625 Query: 479 GNIEKFDG 486 G+ G Sbjct: 626 GSRVLRPG 633 >gi|85859093|ref|YP_461295.1| 30S ribosomal protein S1P [Syntrophus aciditrophicus SB] gi|85722184|gb|ABC77127.1| SSU ribosomal protein S1P [Syntrophus aciditrophicus SB] Length = 586 Score = 38.1 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Query: 119 IQKVREAERDRQYLEFKDK------VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI 171 Q+ + +E + E ++ +GE+++G + ++ V+VD+G ++G I E Sbjct: 21 NQQNQNSEDMMGFKELYEQSLQSVHLGELVTGKIVQINSDMVMVDVGWKTEGYIPAKELR 80 Query: 172 SRE---NLRPGDRVKSYIYDVRREQRGPQVLLSR 202 E + GD ++ + +E ++LSR Sbjct: 81 DEEGNIAVNVGDEIEVMVERRDQEGN---LVLSR 111 Score = 37.0 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ ++ RD D + G + + D R V +++ I+++ RE E+ Sbjct: 156 PGSQVDIRPVRDLDKYV--GQTLMFDVLKYDRKRNNVVLSRRSILEQEREVEKQETLANI 213 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 G ++ G +K + + +DLG DG++ + E GD++ + Sbjct: 214 S--EGVVVEGIIKNITDYGLFIDLGGIDGLLHVTDISWGRITKPSEAFNRGDKITVKVLS 271 Query: 189 VRREQ 193 RE+ Sbjct: 272 FDREK 276 >gi|300709641|ref|YP_003735455.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali B3] gi|299123324|gb|ADJ13663.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali B3] Length = 344 Score = 37.7 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 V A L+ G+ LA +E+++ E +A +I AR + Sbjct: 7 LEDLPGVGPATAEKLLDNGYDTYTSLAVASPAELSNTADVGESSAGDIIRAARNAAD 63 >gi|315426193|dbj|BAJ47837.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum] Length = 316 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 V + L + G V +LA E+ + G E A E+ +AR L Sbjct: 2 IEGVGKATEEKLNSAGITSVLDLAAATPRELVEL-GISAEKAEELCLKARLLLIESGFLD 60 Query: 425 QKKIRELGVSEELCSIPGIDSK--IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + V E ++ + + A+ G++T ++ +L+G E G + Sbjct: 61 KEFVPATEVLERRKAMQRLTTGSRALDAMLGGGVET------QAITELIG--EFGSGKTQ 112 Query: 483 KFDGFLSSLGTPKDQV 498 P++Q Sbjct: 113 VCHTLCVMAQLPREQG 128 >gi|294676675|ref|YP_003577290.1| 30S ribosomal protein S1 [Rhodobacter capsulatus SB 1003] gi|294475495|gb|ADE84883.1| 30S ribosomal protein S1 [Rhodobacter capsulatus SB 1003] Length = 559 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 8/101 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD R + +++ I+++ R +R G+I+ G VK + VDL Sbjct: 159 FQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLT--EGQIVDGVVKNITEYGAFVDL 216 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 G DG++ + E L G+ VK + + ++ Sbjct: 217 GGVDGLLHVTDMAWRRVNHPSEILTIGETVKVQVVKINKDT 257 >gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans ATCC 700633] gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans ATCC 700633] Length = 701 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 28/137 (20%) Query: 87 RDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 D + + + + +Q AK++I RE E + Y GT Sbjct: 584 IDETGVKIDIDQEGHVSIASTDAAMIQRAKEIIEDLTREIEVGQVYE-----------GT 632 Query: 146 VKRVEYGNVIVDLGNSDGVI-----RRDETISR--ENLRPGDRVKSYIYDVRREQRGPQV 198 V+R+E V++ + E +++ + L GD+VK + ++ + R + Sbjct: 633 VRRIEKFGAFVEIAKGKDGLVHISELAHERVAKVEDVLAIGDKVKVKVTEIDGQGR---I 689 Query: 199 LLSRTHPQFMVKLFHME 215 LSR L E Sbjct: 690 NLSR------KALIEKE 700 >gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101] Length = 424 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQ 193 +K G+++ V G V D+ G I R + EN G + +V E Sbjct: 236 EKEGKVLQVKVNGFNRGGVTADVEGLRGFIPRSQLQEGENHEALVGKTLGVAFLEVNPET 295 Query: 194 RGPQVLLS 201 R +++LS Sbjct: 296 R--KLVLS 301 >gi|307069532|ref|YP_003878009.1| putative 30S ribosomal subunit protein S1 [Candidatus Zinderia insecticola CARI] gi|306482792|gb|ADM89663.1| putative 30S ribosomal subunit protein S1 [Candidatus Zinderia insecticola CARI] Length = 454 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 11/76 (14%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN---LRPGDRVKSYIYDVRRE 192 K G+I+ G + +++ V +D G S+ ++ +E + EN ++ GD+V Y+ + + Sbjct: 32 KYGDILLGKIVKIDKKFVFIDSGLKSESLVPIEEFKNFENTLKVKLGDKVFLYLEVIEKN 91 Query: 193 -------QRGPQVLLS 201 + Q++LS Sbjct: 92 IGNIKLSYKKAQIILS 107 >gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] Length = 666 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 13/96 (13%) Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E +A LV+ F +E+L ++ +++ E A I + + + TL + Sbjct: 515 VGETVAKRLVSA-FHSMEQLEQASFEDLTAVDEIGERIARSIIAY---FADERNRTLVNR 570 Query: 428 IRELG-----VSEELCS----IPGIDSKIKVALGEN 454 ++E G E+L + + G+ I ++ Sbjct: 571 LKEYGLQMSVPEEKLANRSEKLKGLSIVISGTFAKH 606 >gi|134045413|ref|YP_001096899.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C5] gi|166218761|sp|A4FWV5|RADA_METM5 RecName: Full=DNA repair and recombination protein radA gi|132663038|gb|ABO34684.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C5] Length = 322 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + V A L+ G+ D ++A I E+ IEG E Sbjct: 1 MADVLTELPGVGPSTAEKLIEAGYLDFMKIATSTIGELTDIEGISE 46 >gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington] gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington] Length = 568 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 99 DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + MD + +++VI+++ R RD K K G I+ G VK + +DL Sbjct: 167 FKILSMDKKLGNIVVSRRVILEESRSEARDEMLS--KIKEGMILEGVVKNITDYGAFIDL 224 Query: 159 GNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 G+ DG++ + E L +VK + + + + Sbjct: 225 GSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270 Score = 37.4 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%) Query: 137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K ++ G V ++ +IVD+G ++G I + E +S GD V+ +I + E R Sbjct: 37 KEKTVVKGQVIEIKNDMIIVDVGLKNEGRIPKSEFLS--LPEVGDVVEVFIEKI--EGRN 92 Query: 196 PQVLLSR 202 + +LSR Sbjct: 93 GRTILSR 99 >gi|77966377|gb|ABB07757.1| SSU ribosomal protein S1P [Burkholderia sp. 383] Length = 576 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 465 KGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 524 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 525 RKSRG--INLS 533 Score = 37.4 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 157 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 214 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 215 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 268 >gi|71906915|ref|YP_284502.1| 30S ribosomal protein S1 [Dechloromonas aromatica RCB] gi|71846536|gb|AAZ46032.1| SSU ribosomal protein S1P [Dechloromonas aromatica RCB] Length = 559 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +++ + +R++ K G + G V Sbjct: 141 KDTTPYEGKTLEFKVIKLDRKRNNVVMSRRAVLEATADKDREKLLENLK--EGTTVKGIV 198 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L GD V + I E+ Sbjct: 199 KNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLNVGDEVTAKILKFDAEKN 252 >gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter hydrossis DSM 1100] gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter hydrossis DSM 1100] Length = 777 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR------ENLRPGDRVKSYIY 187 F VG++ G VK V V VD G++ E + L+ GD +K + Sbjct: 628 FNPTVGDVFRGVVKSVMPYGVFVDFNGKSGLLHVSEISHTRIDNVEDVLKEGDEIKVQLV 687 Query: 188 DVRREQRGPQVLLSRTH 204 +V ++ + LSR Sbjct: 688 EVDKKTGKMR--LSRKS 702 >gi|302698227|ref|XP_003038792.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8] gi|300112489|gb|EFJ03890.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8] Length = 1461 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 14/96 (14%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR-------VKSYIYDV 189 VG++++G V R +V + G++ + N G VK+ I + Sbjct: 795 VGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVKGQPLPAVDAVVKAAIVGI 854 Query: 190 RREQRGPQVLL----SRTHPQFMVKLFHMEVPEIYN 221 RE + Q++L SR PQ + E+ EI + Sbjct: 855 DRENK--QLILSTRPSRVSPQPDRSVRDKEIGEISD 888 >gi|291543017|emb|CBL16127.1| Ribosomal protein S1 [Ruminococcus bromii L2-63] Length = 308 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 15/100 (15%) Query: 118 IIQKVREAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI---- 171 I+ RE + + + ++ G+I+ + +E D+G + +TI Sbjct: 103 IVMLSREKAQRKCLDAYISRLRCGDIVPARITHLENFGAFADIGCGIVALMPIDTISVSR 162 Query: 172 ---SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 E G +K+ I V + +S +H + + Sbjct: 163 IEHPAERFTVGMDIKAVIKSVENGR------ISLSHKELL 196 >gi|288818571|ref|YP_003432919.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus TK-6] gi|288787971|dbj|BAI69718.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus TK-6] gi|308752162|gb|ADO45645.1| PHP domain protein [Hydrogenobacter thermophilus TK-6] Length = 580 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 26/120 (21%) Query: 364 QAINVDEIIAHLLVAEG-----FADVEELAC------VKISEIAS------IEGFDEETA 406 + + E +A +L G + +A V + ++ I G + Sbjct: 6 EIAEIFERMADILEFLGDNPYRISTYRRVANILSELNVDVEDLVKSGKIHHIPGIGASSV 65 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSE--ELCSIPGIDSKIKVALGEN--GIKTMEDL 462 +I EYL I+ ++++ + EL ++P I K L GI+T +D Sbjct: 66 EKIL----EYLRTGKISKYEELKGKVPEDLLELMNVPSIGPKTL-KLAYERLGIRTKDDF 120 >gi|255021289|ref|ZP_05293338.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756] gi|254969300|gb|EET26813.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756] Length = 573 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVKSYIYDVRREQR 194 G++++G V RV+ V++D+G S+G + ++ + E ++ GDRV+ + V Sbjct: 30 GDLLTGVVTRVDNDFVVIDVGLKSEGPVPAEQFRNSEGELEVKVGDRVEVCLESVEDGMG 89 Query: 195 GPQVLLSR 202 + LSR Sbjct: 90 ETK--LSR 95 >gi|160934075|ref|ZP_02081462.1| hypothetical protein CLOLEP_02938 [Clostridium leptum DSM 753] gi|156866748|gb|EDO60120.1| hypothetical protein CLOLEP_02938 [Clostridium leptum DSM 753] Length = 313 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 15/95 (15%) Query: 123 REAERDRQYLEFKDKV--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-------SR 173 R A ++ E+ + G+I++ + +E D+G + + I R Sbjct: 112 RRAAQELCMKEYVSTLVPGDIVNARITHLETFGAFADIGCGIVSLLPIDMISVSRIDHPR 171 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFM 208 E G + + I + + +S TH + + Sbjct: 172 ERFSVGMDITAVIKAIDNGR------ISLTHKELL 200 >gi|149637077|ref|XP_001512497.1| PREDICTED: similar to protein with homology to KIAA0790 [Ornithorhynchus anatinus] Length = 372 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 8/96 (8%) Query: 339 IDIITEEEDSINRQKDFNER-------TQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +DII EEE + + + Q F++ I++ E A L+ G+ +E+L + Sbjct: 218 VDIILEEEATPRKIRPHRRSKRAKPKTLQEFLERIHLQE-YASTLLLNGYESLEDLKYIT 276 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 S + + + E + + A L+ + Q+ Sbjct: 277 ESHLVELNIVNPEDRMRLLSAAENLLDDENGQEQEN 312 >gi|77736473|ref|NP_001029936.1| DNA polymerase beta [Bos taurus] gi|109893767|sp|Q27958|DPOLB_BOVIN RecName: Full=DNA polymerase beta gi|73587414|gb|AAI03230.1| Polymerase (DNA directed), beta [Bos taurus] gi|296472338|gb|DAA14453.1| DNA polymerase beta [Bos taurus] Length = 335 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|55845900|gb|AAV66968.1| DNA polymerase beta [Canis lupus familiaris] Length = 318 Score = 37.7 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 40 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 95 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 96 KFVDEGIKTLEDL 108 >gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius ED99] Length = 697 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 44/195 (22%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 + ++V+ + + R + + I+ ++S + QI Sbjct: 517 GLTKEVIEEALEQA-----RKGRLAILEHMMQTIDQPRKELSAYAPKV-------EIMQI 564 Query: 80 SLKVARD-RDPSI----DIGGVVSDPLPPM--------DFGRVAVQSAKQVIIQKVREAE 126 + RD P +I L + + A+ I VREAE Sbjct: 565 KPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMINQARAWIESIVREAE 624 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPG 179 + Y VKR+E V+L + IS E L G Sbjct: 625 VGQVYD-----------AKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDVLNMG 673 Query: 180 DRVKSYIYDVRREQR 194 D +K + ++ ++ R Sbjct: 674 DTLKVKVTEIDKQGR 688 >gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] Length = 697 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 44/195 (22%) Query: 21 SIDRDVVLSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 + ++V+ + + R + + I+ ++S + QI Sbjct: 517 GLTKEVIEEALEQA-----RKGRLAILEHMMQTIDQPRKELSAYAPKV-------EIMQI 564 Query: 80 SLKVARD-RDPSI----DIGGVVSDPLPPM--------DFGRVAVQSAKQVIIQKVREAE 126 + RD P +I L + + A+ I VREAE Sbjct: 565 KPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMINQARAWIESIVREAE 624 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN-------LRPG 179 + Y VKR+E V+L + IS E L G Sbjct: 625 VGQVYD-----------AKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDVLNMG 673 Query: 180 DRVKSYIYDVRREQR 194 D +K + ++ ++ R Sbjct: 674 DTLKVKVTEIDKQGR 688 >gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310] gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310] Length = 478 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRR 191 G+I+ GTV +V++ V++D+G ++GVI E + + GD++++ + ++ Sbjct: 33 GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPEDVVAVGDQIEALVL--QK 90 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E + ++LLS+ Q+ +E + +G+V Sbjct: 91 EDKEGRLLLSKKRAQYERAWGKIEKVKEEDGVVT 124 >gi|186681819|ref|YP_001865015.1| hypothetical protein Npun_R1363 [Nostoc punctiforme PCC 73102] gi|186464271|gb|ACC80072.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102] Length = 486 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 V + L +E LA S + ++ GFD + A ++ +A+ LE Sbjct: 228 PGVTPLRYTQLQDVAITTLESLANTSPSTLENLVGFDPKVAPKLVVQAQSALEKR 282 >gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM] Length = 664 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +I++ K + F I + A +L+AE F +E + I E+ SI+G + A Sbjct: 489 AAIDQSKQNSLERVLFALGIRLVGQKAAVLIAERFETMEAVMEASIDELTSIDGIGTKMA 548 Query: 407 VEI 409 I Sbjct: 549 ESI 551 >gi|126654692|ref|ZP_01726226.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110] gi|126623427|gb|EAZ94131.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110] Length = 304 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 38/219 (17%) Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEI------ISGTVKRVEYGN 153 + P+D R + +++Q +V+ + R Q E + VGEI + V R G Sbjct: 76 EILPLDEEREFLVTSEQNADGQVKLSRRQLQLKEAWENVGEIAEMGHSVQMRVTRTNKGG 135 Query: 154 VIVDLGNSDGVIRRDETISRENLR--PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 V+ ++ G I R + +E+L G + + +V +++LS+ ++ Sbjct: 136 VVGEVEGLQGFIPRSHLLEKEDLNALVGQMLTATFLEVNPSTN--KLVLSQRKAIAAARM 193 Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 +E ++ +G VSR VF + + + GSRV +L Sbjct: 194 DKLEAGQLVSG-----KVSRIQPY----GVFVDFEGVSGLLHITQVSGSRV----DDLN- 239 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 I ++ D + L +DE RI + Sbjct: 240 ---HIFKYNQDIKVMI---LS--------IDEYKNRIAL 264 >gi|91078992|ref|XP_974639.1| PREDICTED: similar to mitochondrial 28S ribosomal protein S28 [Tribolium castaneum] gi|270003680|gb|EFA00128.1| hypothetical protein TcasGA2_TC002944 [Tribolium castaneum] Length = 166 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 Q R+ ++++ D G++++G V V ++ +D G V R + E Sbjct: 63 QTFASLLRNSKFIDLGDPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASE-YVR 121 Query: 179 GDRVKSYIYDVRREQR 194 G +V+ I ++ + Sbjct: 122 GSKVRILIKELELSSK 137 >gi|73979121|ref|XP_856344.1| PREDICTED: similar to polymerase (DNA directed), beta isoform 2 [Canis familiaris] Length = 267 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|303326814|ref|ZP_07357256.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3] gi|302862802|gb|EFL85734.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3] Length = 488 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETI---SRENLRPGDRVKSYIYDVRREQR 194 G+ +SGTV + +V VD+G DG++ R + + +E+ PGD V++++ V ++ Sbjct: 35 GQKVSGTVIAITGDSVFVDMGIKVDGIMERKDILDAEGKESAGPGDSVEAWVIAVSPQE- 93 Query: 195 GPQVLLSRT 203 + LSR+ Sbjct: 94 ---IRLSRS 99 >gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 401 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 39/192 (20%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + + +D + + + + +I++ RE + + VG+++ G V R+ Sbjct: 153 IGKAIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLV--VGDVVEGRVSRLTNF 210 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 VD+G DG++ E + L+ G VK + + ++ + + +T P Sbjct: 211 GSFVDIGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270 Query: 207 FMVK---------LFHMEV---------PEIYNGIVQVKAVSRDP-------------GS 235 + + EV E+ +GI + VS G Sbjct: 271 PFEQATSSLNEGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQ 330 Query: 236 RAKLAVFSSDSS 247 + K+ V + D S Sbjct: 331 KVKVKVLNIDPS 342 >gi|222476129|ref|YP_002564650.1| helix-hairpin-helix motif protein [Halorubrum lacusprofundi ATCC 49239] gi|222454500|gb|ACM58764.1| helix-hairpin-helix motif protein [Halorubrum lacusprofundi ATCC 49239] Length = 485 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL-Q 425 V + A L G+ +++A E+ ++G E A I+ A EG I L Sbjct: 210 GVGKGTAPKLARNGYETRDDVAAATEQELREVQGIGESKAQSIRQSAHALSEGCVIRLTD 269 Query: 426 KKIRELGVSEELCSIP--GIDSKIK 448 + + S I G++ I Sbjct: 270 ETVPAAEYSPLFIDIETDGLNPSII 294 >gi|94987197|ref|YP_595130.1| 30S ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00] gi|94731446|emb|CAJ54809.1| ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00] Length = 574 Score = 37.7 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE---NLRPGDRVKSYIYDVRREQ 193 G I+ G + R++ NV+VD+ S+G I E + + + GD++ ++ VR+ + Sbjct: 35 EGTIVKGEIVRIDDDNVLVDVNFKSEGQIPTIEFQNTDGNITAKVGDKIDVFV--VRKNE 92 Query: 194 RGPQVLLS 201 + ++LS Sbjct: 93 QEGTIILS 100 >gi|116689070|ref|YP_834693.1| 30S ribosomal protein S1 [Burkholderia cenocepacia HI2424] gi|170732358|ref|YP_001764305.1| 30S ribosomal protein S1 [Burkholderia cenocepacia MC0-3] gi|105892314|gb|ABF75479.1| SSU ribosomal protein S1P [Burkholderia cenocepacia AU 1054] gi|116647159|gb|ABK07800.1| SSU ribosomal protein S1P [Burkholderia cenocepacia HI2424] gi|169815600|gb|ACA90183.1| ribosomal protein S1 [Burkholderia cenocepacia MC0-3] Length = 576 Score = 37.7 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 465 KGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 524 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 525 RKSRG--INLS 533 Score = 37.4 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 157 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 214 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 215 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 268 >gi|95929492|ref|ZP_01312235.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684] gi|95134608|gb|EAT16264.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684] Length = 582 Score = 37.7 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ R+ D IG + ++ R + +++V+++ RE++R Sbjct: 154 PGSQVDLRPVRNLDKL--IGETFEFKIIKLNKRRGNIVLSRRVLLETERESQRSDTLKTL 211 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + G+I+ G VK + +DLG DG++ + + L GD + + Sbjct: 212 E--EGQIVEGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRVSHPSDILAVGDSINVKVLK 269 Query: 189 VRREQ 193 RE+ Sbjct: 270 FDREK 274 >gi|294781761|ref|ZP_06747094.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium sp. 1_1_41FAA] gi|294481871|gb|EFG29639.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium sp. 1_1_41FAA] Length = 827 Score = 37.7 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%) Query: 86 DRDPSIDIGGVVSDPLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISG 144 + P +IG V + +D R S K +R++ + E+K VG + Sbjct: 686 EETPKFEIGNEVELKITELDLNDRKIKGSLKA-----LRKSPWEHAMEEYK--VGTTVEK 738 Query: 145 TVKRVEYGNVIVDLGN-SDGVIR----RDETIS--RENLRPGDRVKSYIYDVRREQRGPQ 197 +K V + V+L DG I E I R+ GD VK+ + +V ++ + + Sbjct: 739 KIKTVADFGLFVELTKGIDGFIPTQFASKEFIKNIRDKFNEGDIVKARVVEVNKDTQKIK 798 Query: 198 V 198 + Sbjct: 799 L 799 >gi|257784971|ref|YP_003180188.1| DNA-directed RNA polymerase, beta' subunit [Atopobium parvulum DSM 20469] gi|257473478|gb|ACV51597.1| DNA-directed RNA polymerase, beta' subunit [Atopobium parvulum DSM 20469] Length = 1475 Score = 37.7 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG--RAREYLEGID 421 + V + + G V +L ++ I+G + E++ AR L ++ Sbjct: 1334 DDLGVSQRWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNLLYILE 1393 Query: 422 ITLQKKIRELGVSEELCSIPGI 443 + SE+L + + Sbjct: 1394 PEEDEA-----DSEDLSQLLNM 1410 >gi|322371738|ref|ZP_08046281.1| hypothetical protein ZOD2009_19593 [Haladaptatus paucihalophilus DX253] gi|320548623|gb|EFW90294.1| hypothetical protein ZOD2009_19593 [Haladaptatus paucihalophilus DX253] Length = 189 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 +D+ +A L G V LA +A FD + + A E L Sbjct: 135 TDVPEIDDRLADELAEAGITSVRSLAIANPERVADSLSFDRNRVTKWRDSAHELL 189 >gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] Length = 714 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 26/121 (21%) Query: 89 PSIDIGGVVSDPLPPMDFGRV--------AVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 ++ + + + G V A Q AK+ I + EA KVGE Sbjct: 587 KNVRALEELGVEVDIEEDGTVRIYSSDMEAAQKAKKRIEELTLEA-----------KVGE 635 Query: 141 IISGTVKRVEYGNVIVDL-GNSDGVIRRDETISR------ENLRPGDRVKSYIYDVRREQ 193 I GTV ++ V L ++G++ + ++L+ GD +K ++ + Sbjct: 636 IYEGTVTKITPFGAFVSLFPGTEGLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERG 695 Query: 194 R 194 + Sbjct: 696 K 696 >gi|319411653|emb|CBQ73697.1| DNA repair protein RAD51 [Sporisorium reilianum] Length = 354 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 22/66 (33%) Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 + + F ++ + L G+ VE +A + ++G E A Sbjct: 13 EEDMGEAFGPLPVSKLEDFGISSSDCKKLAEAGYNTVESIAFTPKKSLLLVKGISEAKAD 72 Query: 408 EIQGRA 413 +I A Sbjct: 73 KILAEA 78 >gi|295133734|ref|YP_003584410.1| 30S ribosomal protein S1 [Zunongwangia profunda SM-A87] gi|294981749|gb|ADF52214.1| 30S ribosomal protein S1 [Zunongwangia profunda SM-A87] Length = 609 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Query: 125 AERDRQYLE-FKD-KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 E ++ E F D E+++G V + + I+D+ S+GVI +E +L+ GD Sbjct: 56 EEFEKLVEENFVDTLDDEVVTGKVINITDRDAIIDINAKSEGVISLNEFRYNPDLKVGDE 115 Query: 182 VKSYIYDVRREQRGPQVLLS 201 V+ I DVR + G Q++LS Sbjct: 116 VEVLI-DVREDATG-QLVLS 133 >gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus subsp. carnosus TM300] gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 701 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 +I L G + + + Q +I + RE D +VG++ + V+R+E Sbjct: 582 EIIDETGVKLDIEQDGTIFIGAVDQDMINRAREIIEDITRE---AEVGQVYNAKVRRIEK 638 Query: 152 GNVIVDLGNSDGVIRRDETISR-------ENLRPGDRVKSYIYDVRREQR 194 V+L + I+ + L+ GD ++ + ++ + R Sbjct: 639 YGTFVELFPGKDALLHISQIANQRINKVEDVLKLGDTIEVKVTEIDDKGR 688 >gi|167647599|ref|YP_001685262.1| hypothetical protein Caul_3637 [Caulobacter sp. K31] gi|167350029|gb|ABZ72764.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 234 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELG--VSEELCSIPGIDSKIKVALGENGIKTMED 461 +TA + + ++ + + + E +++L + GI K+ +L E G+ + Sbjct: 137 DTAETMVAETLKAVDATTEEVAEAVVETSEAAADDLTLLVGIGPKLAASLAELGVTRFAE 196 Query: 462 LAGCSVDDLLGWSEN 476 LA +L + E Sbjct: 197 LAAWGPKELADFDEK 211 >gi|77919478|ref|YP_357293.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380] gi|77545561|gb|ABA89123.1| SSU ribosomal protein S1P [Pelobacter carbinolicus DSM 2380] Length = 573 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 Q+ L+ R+ D +G + ++ R + +++V++++ RE+ R Sbjct: 145 PGSQVDLRPVRNLDKL--LGETFEFKIIKLNKRRGNIVLSRRVLLEEQRESLRQDTLETL 202 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 + + G VK + +DLG DG++ + + L GD++K + Sbjct: 203 A--EDQEVVGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRVAHPSDVLAVGDKIKVKVLK 260 Query: 189 VRREQ 193 RE+ Sbjct: 261 FDREK 265 >gi|312795455|ref|YP_004028377.1| SSU ribosomal protein S1P [Burkholderia rhizoxinica HKI 454] gi|312167230|emb|CBW74233.1| SSU ribosomal protein S1P [Burkholderia rhizoxinica HKI 454] Length = 598 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 138 VGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ GTVK V+ ++ L +G +R E R L+ GD+V + ++ Sbjct: 486 KGSIVDGTVKAVDPKGAVIQLSVEVEGYLRASEIAQDRVEDARNVLKEGDKVNVMVINID 545 Query: 191 REQRGPQV 198 R+ RG Q+ Sbjct: 546 RKSRGIQL 553 Score = 37.7 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 178 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 235 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 236 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 289 >gi|182623946|ref|ZP_02951734.1| ribosomal protein S1 family [Clostridium perfringens D str. JGS1721] gi|177910839|gb|EDT73193.1| ribosomal protein S1 family [Clostridium perfringens D str. JGS1721] Length = 378 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + + V +++VI +++R E+ + K GE G V R+ Sbjct: 151 VGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWS--SIKEGEKRKGKVTRLAKF 208 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VD+G +G++ + E + GD V+ ++ +V ++ Sbjct: 209 GAFVDIGGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDR 255 >gi|161525427|ref|YP_001580439.1| 30S ribosomal protein S1 [Burkholderia multivorans ATCC 17616] gi|189349836|ref|YP_001945464.1| 30S ribosomal protein S1 [Burkholderia multivorans ATCC 17616] gi|221201261|ref|ZP_03574301.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2M] gi|221206285|ref|ZP_03579298.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2] gi|221213566|ref|ZP_03586540.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD1] gi|160342856|gb|ABX15942.1| ribosomal protein S1 [Burkholderia multivorans ATCC 17616] gi|189333858|dbj|BAG42928.1| small subunit ribosomal protein S1 [Burkholderia multivorans ATCC 17616] gi|221166355|gb|EED98827.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD1] gi|221173594|gb|EEE06028.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2] gi|221179111|gb|EEE11518.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2M] Length = 570 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ G VI G+ +G +R E R L+ GD+V + + ++ Sbjct: 459 KGSIVDGVVKSVDAKGAVIALTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 518 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 519 RKSRG--INLS 527 Score = 37.0 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 151 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 208 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 209 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 262 >gi|116333424|ref|YP_794951.1| 30S ribosomal protein S1 [Lactobacillus brevis ATCC 367] gi|116098771|gb|ABJ63920.1| SSU ribosomal protein S1P [Lactobacillus brevis ATCC 367] Length = 434 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G + + ++ + + + I++K R A+++ + G+++ G V R+ Sbjct: 163 GQTLEFKIVEIEPSENRLILSHRAIVEKQRAAQKEEIMAKLTA--GDVVDGKVARLTNFG 220 Query: 154 VIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ E + L+ G VK + V ++ Sbjct: 221 AFVDLGGVDGLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDADR 266 >gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] Length = 691 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 28/183 (15%) Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+ + L + IG V + M+ A +I R+A Sbjct: 153 WALVDVGFKSEGTVGLDEWGPEEDQPKIGDTVKVLIEEMEDELGAADDPYGMISLSKRKA 212 Query: 126 ERDRQYLEFKDK--VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR-- 181 E+ ++ + G++++GTV R G ++VD+G + V + + RPGD Sbjct: 213 EKIIEWEAMMETVAEGQVVTGTVIRKIKGGLLVDIGVN--VFLPGSQV--DIRRPGDIGD 268 Query: 182 -----VKSYIYDVRREQRGPQVLLSRTHPQFMVK--------LF-HMEVPEIYNGIVQVK 227 V++ + + +R +++SR + + L +EV +I GIV K Sbjct: 269 FIGRVVQAEVLKIDDTRRN--IVISRRS--LIERQREEDRAYLMQELEVGQIRKGIV--K 322 Query: 228 AVS 230 ++ Sbjct: 323 NIA 325 Score = 36.6 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG VV + +D R + +++ +I++ RE +R E + VG+I G VK + Sbjct: 270 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELE--VGQIRKGIVKNIADF 327 Query: 153 NVIVDLGNSDGVI----RRDETI--SRENLRPGDRVKSYIYDVRREQ 193 VDLG DG++ E I E L ++ + + RE+ Sbjct: 328 GAFVDLGGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREK 374 >gi|90421921|ref|YP_530291.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisB18] gi|90103935|gb|ABD85972.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisB18] Length = 565 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA---------------ARSLYGTMSDIR-VEINPETGDISLFRLLEV 68 +V L + +++ +A + + V N G ++ V Sbjct: 78 EVFLDRIENALGEAVLSRDKARREESWGKLEKAFNNNEKVHGVIFNQVKGGFTVDLDGAV 137 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P ++ + MD R + +++ ++++ R +R Sbjct: 138 A---FLPRSQVDIRPIRDVAPLMNNSQP--FQILKMDRRRGNIVVSRRTVLEETRAEQRQ 192 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G++I G VK + VDLG DG++ + E L G V Sbjct: 193 ELVQNLE--EGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTV 250 Query: 183 KSYIYDVRREQ 193 K I + E Sbjct: 251 KVKIIKINHET 261 >gi|255037232|ref|YP_003087853.1| 30S ribosomal protein S1 [Dyadobacter fermentans DSM 18053] gi|254949988|gb|ACT94688.1| RNA binding S1 domain protein [Dyadobacter fermentans DSM 18053] Length = 598 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 18/168 (10%) Query: 40 RSLYGTMSDIRVEINPETGD---ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGV 96 + + I + T + +F + E QI +K RD D + +G Sbjct: 124 QKSFDEDVVIDANVKRRTKGGLIVDIFGI-----EAFLPGSQIDVKPIRDFD--VFVGKR 176 Query: 97 VSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV 156 + + +++ V + +++I+K EA+R + + G+++ G +K + V + Sbjct: 177 MEVKVVKINYANDNVVVSHKILIEKDLEAQRQQILNNLE--KGQVLEGVIKNMTNFGVFI 234 Query: 157 DLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQV 198 DLG DG++ + + L ++ + D E++ + Sbjct: 235 DLGGVDGLLHITDISWGRINHPSDLLSLDQKLNVVVLDFDEEKKRISL 282 >gi|20067681|emb|CAD29082.1| chimeric DNA-directed DNA polymerase bf4-7 [synthetic construct] Length = 325 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|18311132|ref|NP_563066.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13] gi|18145815|dbj|BAB81856.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13] Length = 378 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + + V +++VI +++R E+ + K GE G V R+ Sbjct: 151 VGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWS--SIKEGEKRKGKVTRLAKF 208 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQ 193 VD+G +G++ + E + GD V+ ++ +V ++ Sbjct: 209 GAFVDIGGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDR 255 >gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100] gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100] Length = 651 Score = 37.7 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 24/112 (21%) Query: 366 INVD---EIIAHLLVAEG-FADVEELACVKISEIASIEGFDEETAVEIQGRAREY----- 416 +N+D E I LL EG ++E + +K + ++EGF E+ + Sbjct: 433 LNIDGLGENIVELLFKEGKITNIESIFFLKYDDFLNLEGFKEKKINNLLNAIENAKKCSL 492 Query: 417 ---LEGIDITLQKKIRELGVSEEL------------CSIPGIDSKIKVALGE 453 + + I ++ +++ ++ G ++ +L E Sbjct: 493 SRFITALGIEHIGEVAAKKLAQSFGFDWFLQSYEAYVNLEGFGEQMAKSLQE 544 >gi|303325404|ref|ZP_07355847.1| excinuclease ABC subunit C [Desulfovibrio sp. 3_1_syn3] gi|302863320|gb|EFL86251.1| excinuclease ABC subunit C [Desulfovibrio sp. 3_1_syn3] Length = 661 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 R + + M+ + A LL E F VE + + E+ ++ G A + Sbjct: 584 RRARQGAALSGELMRLPGIGPATARLLW-ETFGSVEAMRAASLEELRALPGIGPAKAALL 642 Query: 410 QGRARE 415 Q + + Sbjct: 643 QEKLKN 648 >gi|269216200|ref|ZP_06160054.1| DNA-directed RNA polymerase, beta subunit [Slackia exigua ATCC 700122] gi|269130459|gb|EEZ61537.1| DNA-directed RNA polymerase, beta subunit [Slackia exigua ATCC 700122] Length = 1458 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 4/88 (4%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + + + V + A+ G V +L E+ IEG + E+ + Sbjct: 1302 EDARLYLYDDLGVSQRWANKFSEAGIDTVGDLVGYTEDELLRIEGIGAKALEEL----KA 1357 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGI 443 LE +++ ++E+ + + Sbjct: 1358 GLEEHELSHLLDDELAATNDEMSQLLDM 1385 >gi|20067693|emb|CAD29088.1| chimeric DNA-directed DNA polymerase bf4-15 [synthetic construct] Length = 319 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 L + GIKT+EDL Sbjct: 113 KLVDEGIKTLEDL 125 >gi|313886404|ref|ZP_07820126.1| putative ribosomal protein S1 [Porphyromonas asaccharolytica PR426713P-I] gi|312924150|gb|EFR34937.1| putative ribosomal protein S1 [Porphyromonas asaccharolytica PR426713P-I] Length = 598 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Query: 123 REAERDRQYLEFKD--KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 ER+ Y + K E++ G V + V+V++ S G+I +E ++L+ G Sbjct: 30 MRKEREAIYDKTLTTIKENEVVMGKVMSISKREVLVNIDYKSAGIISANEFNYNKDLKVG 89 Query: 180 DRVKSYIYDVRREQRGPQVLLS 201 D V+ + +E R Q+ LS Sbjct: 90 DEVEVLVES--KEDRFGQLQLS 109 >gi|289192308|ref|YP_003458249.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp. FS406-22] gi|288938758|gb|ADC69513.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp. FS406-22] Length = 760 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 19/113 (16%) Query: 130 QYLE---FKDKV-GEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETI--SRENLRPGDRV 182 + E F D G+ G V R+E ++L G++R + I ENL GD + Sbjct: 122 VFDELATFYDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLKLENLNIGDEI 181 Query: 183 KSYIYDVRREQRGP---QVLLSRTHPQFMVKLFHMEVP-----EIYNGIVQVK 227 DVR E+R + L T + + EVP +I +V+++ Sbjct: 182 IVQAIDVRPEKREIDFKYIPL--TTYDLVK--YEKEVPLTQIKDISQNLVEMR 230 >gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03] Length = 1175 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 15/103 (14%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-----GNSDGVIRRDET---ISRENLRP 178 R +F GEI+ G V +V V+V L G + + D+ I N Sbjct: 538 NKRTISDFS--KGEILLGRVTKVSDRQVLVQLSDTTVGAINLIDMADDYTKVIPA-NFHK 594 Query: 179 GDRVKSYIYDVRREQRGPQVLLS-RTHPQFMVKLFHMEVPEIY 220 + ++ I DV + ++LLS R L +E PEI Sbjct: 595 NEVLRVCILDVDVPNK--KILLSVRPSRVLSSSL-PIEDPEIK 634 >gi|215273536|dbj|BAG85031.1| putative polyketide synthase [Streptomyces lasaliensis] Length = 1904 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 EI ++ D E A RE L + + +RE G+ + L S+ G D + E Sbjct: 1823 EIGAVPHVDPEEAA-----VREALASLSLQQ---LREAGLVDVLLSLAGGDDAMAGTGSE 1874 Query: 454 NGIKTMEDLAGCSVDDLLGW 473 +T+ +A VDDL+ Sbjct: 1875 AEEETL-SIATMDVDDLVQL 1893 >gi|197244386|emb|CAQ64691.1| lasalocid modular polyketide synthase [Streptomyces lasaliensis] Length = 1877 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 EI ++ D E A RE L + + +RE G+ + L S+ G D + E Sbjct: 1796 EIGAVPHVDPEEAA-----VREALASLSLQQ---LREAGLVDVLLSLAGGDDAMAGTGSE 1847 Query: 454 NGIKTMEDLAGCSVDDLLGW 473 +T+ +A VDDL+ Sbjct: 1848 AEEETL-SIATMDVDDLVQL 1866 >gi|254252927|ref|ZP_04946245.1| Ribosomal protein S1 [Burkholderia dolosa AUO158] gi|124895536|gb|EAY69416.1| Ribosomal protein S1 [Burkholderia dolosa AUO158] Length = 596 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 177 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 234 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 235 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 288 Score = 37.7 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 19/121 (15%) Query: 90 SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK--VGEIISGTVK 147 G V + +D K+ I +++ E D + + G ++ G VK Sbjct: 443 KYKKGDEVEAVVLGIDVE-------KERISLGIKQLEGDP-FSNYVAMNDKGSLVDGVVK 494 Query: 148 RVE-YGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQVLL 200 V+ G VI G+ +G +R E R L+ GD+V + + ++ R+ RG + L Sbjct: 495 SVDAKGAVITLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRG--INL 552 Query: 201 S 201 S Sbjct: 553 S 553 >gi|86157945|ref|YP_464730.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C] gi|197122752|ref|YP_002134703.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. K] gi|220917535|ref|YP_002492839.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1] gi|85774456|gb|ABC81293.1| SSU ribosomal protein S1P [Anaeromyxobacter dehalogenans 2CP-C] gi|196172601|gb|ACG73574.1| ribosomal protein S1 [Anaeromyxobacter sp. K] gi|219955389|gb|ACL65773.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1] Length = 568 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVR 190 K G I+ G VK + +DLG DG++ + E G V+ + Sbjct: 202 KEGAILKGVVKNLTDYGAFIDLGGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFD 261 Query: 191 REQ 193 Sbjct: 262 PTS 264 >gi|322379236|ref|ZP_08053627.1| 30S ribosomal protein S1 [Helicobacter suis HS1] gi|322379691|ref|ZP_08054004.1| 30S ribosomal protein S1 [Helicobacter suis HS5] gi|321147840|gb|EFX42427.1| 30S ribosomal protein S1 [Helicobacter suis HS5] gi|321148376|gb|EFX42885.1| 30S ribosomal protein S1 [Helicobacter suis HS1] Length = 563 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDE-TISRENLRPG 179 ++ E+ + E D +II G + R G I+ D + + + + ++ RE+ G Sbjct: 112 IKNQEKIQALGE--DYKDKIIEGKITRENKGGYIITDAEGVEYFLSKSQSSLKRESKHCG 169 Query: 180 DRVKSYIYDVRREQRGPQVLLSR 202 +K+ I + E + +SR Sbjct: 170 KHIKACIIAINPENG--SISVSR 190 >gi|291409035|ref|XP_002720811.1| PREDICTED: DNA-directed DNA polymerase beta [Oryctolagus cuniculus] Length = 335 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKV 449 +E + G + A +I E+L + +KIR+ S L + GI Sbjct: 57 AEAKKLPGVGTKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 Query: 450 ALGENGIKTMEDL 462 + GIKT+EDL Sbjct: 113 KFVDEGIKTLEDL 125 >gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 738 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 24/123 (19%) Query: 85 RDRDPSIDIGGVVSDPLPPM------DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 + + I+ V + R A+ A +I VR A KV Sbjct: 584 KMINKIIEACDEVKIDIEDDGHVVIYHMNREAITKAANMIRDIVRVA-----------KV 632 Query: 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVRR 191 G+I G V R+E V+L +DG++ + + L GD +K + ++ Sbjct: 633 GDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKICHERVEKVEDKLNIGDTIKVKVMEIDD 692 Query: 192 EQR 194 R Sbjct: 693 RGR 695 >gi|256811040|ref|YP_003128409.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens AG86] gi|256794240|gb|ACV24909.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens AG86] Length = 760 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 19/113 (16%) Query: 130 QYLE---FKDKV-GEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETI--SRENLRPGDRV 182 + E F D G+ G V R+E ++L G++R + I ENL GD + Sbjct: 122 VFDELATFHDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLKLENLNIGDEI 181 Query: 183 KSYIYDVRREQRGP---QVLLSRTHPQFMVKLFHMEVP-----EIYNGIVQVK 227 DVR E+R + L T + + E+P +I +V++K Sbjct: 182 IVQAIDVRPEKREIDFKYIPL--TTYDLVK--YEKEIPLTNIKDISQNLVEMK 230 >gi|162218058|ref|YP_620452.2| 30S ribosomal protein S1 [Burkholderia cenocepacia AU 1054] Length = 570 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 459 KGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 518 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 519 RKSRG--INLS 527 Score = 37.4 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 151 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 208 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 209 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 262 >gi|148232172|ref|NP_001081643.1| DNA polymerase beta [Xenopus laevis] gi|6015014|sp|O57383|DPOLB_XENLA RecName: Full=DNA polymerase beta gi|2661842|emb|CAA75741.1| DNA polymerase beta [Xenopus laevis] gi|76780321|gb|AAI06330.1| PolB protein [Xenopus laevis] Length = 334 Score = 37.7 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE---LCSIPGIDSKIKVA 450 E ++G + A +I E+L + +KIR+ S L + GI Sbjct: 58 EAKKLDGVGAKIAEKI----DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARK 113 Query: 451 LGENGIKTMEDL 462 + GIKT++DL Sbjct: 114 FFDEGIKTLDDL 125 >gi|257064681|ref|YP_003144353.1| DNA-directed RNA polymerase subunit beta' [Slackia heliotrinireducens DSM 20476] gi|256792334|gb|ACV23004.1| DNA-directed RNA polymerase subunit beta' [Slackia heliotrinireducens DSM 20476] Length = 1463 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 1/85 (1%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + + + V + A+ G V +L E+ IEG + E++ ++ Sbjct: 1303 EDARLYLYDDLGVSQRWANKFSEAGIETVGDLVGYTEDELLRIEGIGAKALEELKAGLQD 1362 Query: 416 YLEGIDITLQKKIRELGVSEELCSI 440 + + +S+ L + Sbjct: 1363 HGLESLLEDDLTATNDEMSQ-LLDM 1386 >gi|161702964|ref|YP_368401.2| 30S ribosomal protein S1 [Burkholderia sp. 383] Length = 570 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 138 VGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS------RENLRPGDRVKSYIYDVR 190 G I+ G VK V+ +V L G+ +G +R E R L+ GD+V + + ++ Sbjct: 459 KGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINID 518 Query: 191 REQRGPQVLLS 201 R+ RG + LS Sbjct: 519 RKSRG--INLS 527 Score = 37.4 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 87 RDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV 146 +D + G + + +D R V +++ +I+ + ER + K G I++G V Sbjct: 151 KDTTPYEGKTLEFRVIKLDRKRNNVVLSRRAVIEATQGEERAKLLETLK--EGAIVNGVV 208 Query: 147 KRVEYGNVIVDLGNSDGVI------RRDETISRENLRPGDRVKSYIYDVRREQR 194 K + VDLG DG++ R E L G V + I +E+ Sbjct: 209 KNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKN 262 >gi|94266546|ref|ZP_01290232.1| Ribosomal protein S1 [delta proteobacterium MLMS-1] gi|93452821|gb|EAT03347.1| Ribosomal protein S1 [delta proteobacterium MLMS-1] Length = 570 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 14/127 (11%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L+ RD D IG + + R V +++ I+ E R + E Sbjct: 141 PYSQIDLRPVRDLD--ALIGESFDFKILKFNRRRNNVVISRRAIM----EEARQQLRNEM 194 Query: 135 KD--KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYI 186 + + G++++GTV + V VDLG DG+ + + + GD ++ + Sbjct: 195 RGTLEEGQVLTGTVTNITDYGVFVDLGGMDGLCHITDLSWGRVSHPSKMFKVGDEIQVKV 254 Query: 187 YDVRREQ 193 +E Sbjct: 255 LKYDQEN 261 >gi|118579778|ref|YP_901028.1| ribosomal protein S1 [Pelobacter propionicus DSM 2379] gi|118502488|gb|ABK98970.1| SSU ribosomal protein S1P [Pelobacter propionicus DSM 2379] Length = 579 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 D IG + ++ R + +++ I+ + R A RD + + G+I+ G VK Sbjct: 163 DSDSYIGLTSKFKVIKLNQRRDNIVLSRRAILDEERAASRDVTLAKLE--EGQIVEGVVK 220 Query: 148 RVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 V VDLG DG++ + + L+PG V + + R + + + Sbjct: 221 NVTEYGAFVDLGGVDGLLHVSDLSWGRVGKPADVLKPGQTVTAKVLKFDRTKGKISLGVK 280 Query: 202 RTHPQ 206 +T P Sbjct: 281 QTLPD 285 >gi|332027963|gb|EGI68014.1| DNA polymerase beta [Acromyrmex echinatior] Length = 337 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR--ELGVSEELCS-IPGIDSKIKV 449 E + G + A +I E+L+ + + I+ + V+ L + + GI Sbjct: 59 EEAKKLPGIGVKIAKKI----DEFLQTGKLQKLEDIKKDDTNVAISLLARVSGIGPAKAK 114 Query: 450 ALGENGIKTMEDL 462 L E+GIKT+EDL Sbjct: 115 ELVESGIKTLEDL 127 >gi|296238083|ref|XP_002764014.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Callithrix jacchus] Length = 201 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGI 420 LV+ GF EEL VK SE++ G +E A+E +Q RE L Sbjct: 93 LVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNK 138 >gi|316931461|ref|YP_004106443.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris DX-1] gi|315599175|gb|ADU41710.1| ribosomal protein S1 [Rhodopseudomonas palustris DX-1] Length = 565 Score = 37.7 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 29/191 (15%) Query: 25 DVVLSVMADSIQKA---------------ARSLYGTMSDIR-VEINPETGDISLFRLLEV 68 +V L + +++ +A + + V N G ++ V Sbjct: 78 EVFLDRIENALGEAVLSRDKARREESWGKLEKAFNNNEKVFGVIFNQVKGGFTVDLDGAV 137 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 Q+ ++ RD P ++ + MD R + +++ ++++ R +R Sbjct: 138 A---FLPRSQVDIRPIRDVAPLMNNSQP--FQILKMDRRRGNIVVSRRTVLEETRAEQRQ 192 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRV 182 + G++I G VK + VDLG DG++ + E L G V Sbjct: 193 ELVQNLE--EGQVID